BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (260 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q47417 tRNA pseudouridine synthase C n=252 Tax=cellular... 387 e-106 UniRef50_Q8DBG5 tRNA pseudouridine synthase C n=54 Tax=Gammaprot... 299 6e-80 UniRef50_B8CQ92 Pseudouridine synthase n=1 Tax=Shewanella piezot... 265 9e-70 UniRef50_Q15QZ8 Pseudouridine synthase n=5 Tax=Bacteria RepID=Q1... 259 6e-68 UniRef50_Q30SZ1 Pseudouridine synthase n=2 Tax=Proteobacteria Re... 258 2e-67 UniRef50_C8PZW5 Pseudouridine synthase n=1 Tax=Enhydrobacter aer... 256 8e-67 UniRef50_UPI0001AEC02F pseudouridylate synthase, 23S RNA-specifi... 249 6e-65 UniRef50_C5TPY8 Pseudouridine synthase n=6 Tax=Proteobacteria Re... 249 7e-65 UniRef50_Q39Z12 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 242 1e-62 UniRef50_B4RVP9 Pseudouridine synthase n=1 Tax=Alteromonas macle... 242 1e-62 UniRef50_B5JL25 Pseudouridine synthase n=1 Tax=Verrucomicrobiae ... 237 3e-61 UniRef50_Q31IZ8 Pseudouridine synthase n=2 Tax=Proteobacteria Re... 229 1e-58 UniRef50_C4KBT4 Transaldolase n=2 Tax=Proteobacteria RepID=C4KBT... 226 4e-58 UniRef50_A1K5H7 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 226 7e-58 UniRef50_Q47Y03 Pseudouridine synthase n=1 Tax=Colwellia psychre... 223 4e-57 UniRef50_A1U2H1 Pseudouridine synthase n=1 Tax=Marinobacter aqua... 221 1e-56 UniRef50_D2QPA6 Pseudouridine synthase n=1 Tax=Spirosoma lingual... 215 9e-55 UniRef50_Q1N5G6 Pseudouridine synthase n=1 Tax=Bermanella marisr... 213 4e-54 UniRef50_A4BJ00 Pseudouridine synthase n=1 Tax=Reinekea blandens... 213 7e-54 UniRef50_C0Q9S8 TruC n=1 Tax=Desulfobacterium autotrophicum HRM2... 208 1e-52 UniRef50_A9BZ16 Pseudouridine synthase n=9 Tax=Burkholderiales R... 207 4e-52 UniRef50_C6VVP1 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 205 1e-51 UniRef50_Q1QTG8 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 199 8e-50 UniRef50_A6VXE8 Pseudouridine synthase n=2 Tax=Marinomonas RepID... 197 2e-49 UniRef50_A1WTN6 Pseudouridine synthase n=2 Tax=Ectothiorhodospir... 195 1e-48 UniRef50_A3HSB5 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 195 1e-48 UniRef50_A6DMG7 tRNA pseudouridine synthase n=1 Tax=Lentisphaera... 189 1e-46 UniRef50_C7LP91 Pseudouridine synthase n=1 Tax=Desulfomicrobium ... 188 1e-46 UniRef50_Q6MMV3 Pseudouridine synthase n=2 Tax=Bdellovibrio bact... 177 3e-43 UniRef50_B0RLZ1 Pseudouridine synthase n=13 Tax=Xanthomonadaceae... 176 9e-43 UniRef50_A2U235 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 168 2e-40 UniRef50_A9GEI0 Pseudouridine synthase n=2 Tax=Myxococcales RepI... 152 1e-35 UniRef50_B7RZ07 Putative uncharacterized protein n=1 Tax=marine ... 135 2e-30 UniRef50_A9B3Z2 Pseudouridine synthase n=1 Tax=Herpetosiphon aur... 133 6e-30 UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C... 119 1e-25 UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organi... 117 3e-25 UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 116 6e-25 UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 114 4e-24 UniRef50_C9M5C8 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 113 8e-24 UniRef50_A1AVB5 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 112 9e-24 UniRef50_B0VCN8 Pseudouridine synthase n=16 Tax=Acinetobacter Re... 112 1e-23 UniRef50_A9GIV4 Pseudouridine synthase n=1 Tax=Sorangium cellulo... 112 2e-23 UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae ... 111 3e-23 UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C... 111 3e-23 UniRef50_C7LVL1 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 110 3e-23 UniRef50_B6G997 Pseudouridine synthase n=1 Tax=Collinsella sterc... 110 3e-23 UniRef50_A7HL94 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 110 5e-23 UniRef50_B5YAZ5 Pseudouridine synthase n=2 Tax=Dictyoglomus RepI... 110 5e-23 UniRef50_B1H073 Ribosomal large subunit pseudouridine synthase C... 110 6e-23 UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C... 110 7e-23 UniRef50_Q1DCE5 Pseudouridine synthase, RluA family n=2 Tax=Cyst... 109 1e-22 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 109 1e-22 UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 108 1e-22 UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D... 108 1e-22 UniRef50_B7G0Q3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 108 1e-22 UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochm... 108 1e-22 UniRef50_C0N6T7 Pseudouridine synthase n=1 Tax=Methylophaga thio... 108 2e-22 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 108 2e-22 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 107 4e-22 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 107 4e-22 UniRef50_B0N6U2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0... 107 4e-22 UniRef50_A0LXI9 Pseudouridine synthase n=1 Tax=Gramella forsetii... 106 7e-22 UniRef50_Q6MND5 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 106 8e-22 UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. M... 106 8e-22 UniRef50_C8PTH9 Ribosomal large subunit pseudouridine synthase C... 106 9e-22 UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C... 106 9e-22 UniRef50_A3Y8C6 Pseudouridine synthase n=1 Tax=Marinomonas sp. M... 105 1e-21 UniRef50_A9E330 Pseudouridine synthase n=1 Tax=Kordia algicida O... 105 1e-21 UniRef50_D0P480 Ribosomal large subunit pseudouridine synthase A... 105 1e-21 UniRef50_B7FU02 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 105 1e-21 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 105 1e-21 UniRef50_D1W0M0 Pseudouridine synthase n=1 Tax=Prevotella timone... 105 2e-21 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 105 2e-21 UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. J... 104 3e-21 UniRef50_Q6FCX9 Pseudouridine synthase n=1 Tax=Acinetobacter sp.... 104 3e-21 UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=... 104 3e-21 UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C... 104 3e-21 UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gard... 104 3e-21 UniRef50_Q73K15 RNA pseudouridylate synthase family protein n=1 ... 104 4e-21 UniRef50_Q1PXB6 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 103 5e-21 UniRef50_C8PQT2 Ribosomal large subunit pseudouridine synthase D... 103 5e-21 UniRef50_Q0AFD5 Pseudouridine synthase n=3 Tax=Nitrosomonas RepI... 103 5e-21 UniRef50_D2R4N0 Pseudouridine synthase, RluA family n=1 Tax=Pire... 103 5e-21 UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales Re... 103 5e-21 UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pire... 103 6e-21 UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capil... 103 8e-21 UniRef50_C5S931 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 103 8e-21 UniRef50_Q489H0 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 102 9e-21 UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B... 102 9e-21 UniRef50_D2QJH0 Pseudouridine synthase, RluA family n=3 Tax=Bact... 102 9e-21 UniRef50_A3MZ33 Pseudouridine synthase n=9 Tax=Proteobacteria Re... 102 1e-20 UniRef50_Q6MEZ4 Pseudouridine synthase n=1 Tax=Candidatus Protoc... 102 1e-20 UniRef50_A6ESW1 Pseudouridine synthase n=1 Tax=unidentified euba... 102 1e-20 UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium ca... 102 1e-20 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 102 1e-20 UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 102 1e-20 UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepI... 102 2e-20 UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=... 102 2e-20 UniRef50_A9RVX3 Predicted protein n=1 Tax=Physcomitrella patens ... 102 2e-20 UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A... 102 2e-20 UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D... 101 2e-20 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 101 2e-20 UniRef50_A6NVX8 Pseudouridine synthase n=1 Tax=Bacteroides capil... 101 2e-20 UniRef50_C1ZMP6 Pseudouridine synthase n=1 Tax=Planctomyces limn... 101 2e-20 UniRef50_Q30NR3 Pseudouridine synthase n=1 Tax=Sulfurimonas deni... 101 2e-20 UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID... 101 3e-20 UniRef50_Q7MA82 Pseudouridine synthase n=1 Tax=Wolinella succino... 100 3e-20 UniRef50_UPI0001C36F41 hypothetical protein RflaF_04377 n=1 Tax=... 100 3e-20 UniRef50_B2S2H8 Pseudouridine synthase n=2 Tax=Treponema pallidu... 100 4e-20 UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 ... 100 4e-20 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 100 4e-20 UniRef50_A6Q113 Pseudouridine synthase n=1 Tax=Nitratiruptor sp.... 100 5e-20 UniRef50_A6LIG6 Pseudouridine synthase n=5 Tax=Bacteroidales Rep... 100 5e-20 UniRef50_Q3YSF8 Pseudouridine synthase n=5 Tax=canis group RepID... 100 5e-20 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 100 5e-20 UniRef50_B6BGX6 Pseudouridine synthase n=1 Tax=Campylobacterales... 100 5e-20 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 100 7e-20 UniRef50_UPI00016C40E0 pseudouridine synthase n=1 Tax=Gemmata ob... 100 7e-20 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 100 8e-20 UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 100 8e-20 UniRef50_B1Y046 Pseudouridine synthase n=43 Tax=Proteobacteria R... 100 8e-20 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 100 9e-20 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 100 9e-20 UniRef50_Q0A8Q9 Pseudouridine synthase n=4 Tax=Ectothiorhodospir... 100 9e-20 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 99 1e-19 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 99 1e-19 UniRef50_C4V3I7 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 99 1e-19 UniRef50_B1ZRU1 Pseudouridine synthase n=2 Tax=Opitutaceae RepID... 99 1e-19 UniRef50_A6GAA8 Pseudouridine synthase, RluA family protein n=1 ... 99 2e-19 UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix o... 99 2e-19 UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whippl... 99 2e-19 UniRef50_Q7NBQ4 Pseudouridine synthase n=1 Tax=Mycoplasma gallis... 99 2e-19 UniRef50_C0R043 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 98 3e-19 UniRef50_D0XS67 Pseudouridine synthase n=1 Tax=Brevundimonas sub... 98 3e-19 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 98 3e-19 UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desu... 98 3e-19 UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytop... 98 3e-19 UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=... 98 3e-19 UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacteriu... 98 3e-19 UniRef50_Q12L72 Pseudouridine synthase n=17 Tax=Shewanella RepID... 98 3e-19 UniRef50_C6E472 Pseudouridine synthase n=4 Tax=Geobacter RepID=C... 97 4e-19 UniRef50_A7ZDY2 Pseudouridine synthase n=4 Tax=Epsilonproteobact... 97 4e-19 UniRef50_C6BRU5 Pseudouridine synthase n=1 Tax=Desulfovibrio sal... 97 5e-19 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 97 5e-19 UniRef50_C9RKF9 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 97 5e-19 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 97 6e-19 UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales Rep... 97 6e-19 UniRef50_A6VZC6 Pseudouridine synthase n=2 Tax=Marinomonas RepID... 97 6e-19 UniRef50_C0FY60 Pseudouridine synthase n=1 Tax=Roseburia inulini... 97 6e-19 UniRef50_A9BWX6 Pseudouridine synthase n=2 Tax=Comamonadaceae Re... 97 6e-19 UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 97 7e-19 UniRef50_C0F0M1 Putative uncharacterized protein n=1 Tax=Eubacte... 97 7e-19 UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella el... 97 7e-19 UniRef50_D1RB93 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 97 7e-19 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 96 8e-19 UniRef50_B1VEM5 Pseudouridine synthase n=3 Tax=Corynebacterium R... 96 1e-18 UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae Re... 96 1e-18 UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT ... 96 1e-18 UniRef50_C7MES4 Pseudouridine synthase, RluA family n=5 Tax=Acti... 96 1e-18 UniRef50_C8W9Q3 Pseudouridine synthase n=2 Tax=Atopobium RepID=C... 96 1e-18 UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii... 96 1e-18 UniRef50_Q6MM51 Ribosomal large subunit pseudouridine synthase C... 96 1e-18 UniRef50_Q2SK59 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 96 1e-18 UniRef50_B9XS18 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 96 1e-18 UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus Rep... 96 1e-18 UniRef50_B0JGC2 Pseudouridine synthase n=2 Tax=Microcystis aerug... 96 1e-18 UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium t... 96 2e-18 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 96 2e-18 UniRef50_A4ANB8 Pseudouridine synthase n=3 Tax=Flavobacteriales ... 96 2e-18 UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Plan... 95 2e-18 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 95 2e-18 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 95 2e-18 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 95 2e-18 UniRef50_A4CLQ5 Pseudouridine synthase n=16 Tax=Bacteria RepID=A... 95 2e-18 UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID... 95 3e-18 UniRef50_C4GB89 Pseudouridine synthase n=1 Tax=Shuttleworthia sa... 95 3e-18 UniRef50_D1B0V0 Pseudouridine synthase n=1 Tax=Sulfurospirillum ... 95 3e-18 UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Ther... 95 3e-18 UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 95 3e-18 UniRef50_Q0BUM2 Pseudouridine synthase n=12 Tax=Acetobacteraceae... 94 3e-18 UniRef50_C5BU65 Pseudouridine synthase for 23S rRNA and tRNAphe ... 94 3e-18 UniRef50_Q5E092 Pseudouridine synthase n=3 Tax=Aliivibrio RepID=... 94 4e-18 UniRef50_C0M8E2 Pseudouridine synthase n=3 Tax=Streptococcus equ... 94 4e-18 UniRef50_A5WCP4 Pseudouridine synthase n=15 Tax=Moraxellaceae Re... 94 4e-18 UniRef50_Q3AD19 Ribosomal large subunit pseudouridine synthase, ... 94 4e-18 UniRef50_Q1CZL9 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 94 5e-18 UniRef50_B7GQ28 Pseudouridine synthase, RluA family n=21 Tax=Bif... 94 6e-18 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 94 6e-18 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 94 6e-18 UniRef50_Q6AIJ2 Probable ribosomal large subunit pseudouridine s... 94 6e-18 UniRef50_A8U9H8 Pseudouridine synthase n=2 Tax=Bacilli RepID=A8U... 93 7e-18 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 93 7e-18 UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces mari... 93 8e-18 UniRef50_A9CFZ5 Pseudouridine synthase n=3 Tax=Rhizobiales RepID... 93 8e-18 UniRef50_B8I5R6 Pseudouridine synthase n=2 Tax=Clostridium RepID... 93 8e-18 UniRef50_B0S0X9 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 93 8e-18 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 93 8e-18 UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Vict... 93 8e-18 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 93 8e-18 UniRef50_C8PW17 Pseudouridine synthase n=5 Tax=Moraxellaceae Rep... 93 9e-18 UniRef50_C4Z9Y6 Pseudouridine synthase n=1 Tax=Eubacterium recta... 93 9e-18 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 93 9e-18 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 93 9e-18 UniRef50_A6TAT3 Pseudouridine synthase n=57 Tax=Bacteria RepID=A... 93 9e-18 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 93 9e-18 UniRef50_Q1JVY6 Pseudouridine synthase n=1 Tax=Desulfuromonas ac... 93 1e-17 UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales R... 93 1e-17 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 93 1e-17 UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 93 1e-17 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 92 1e-17 UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Ta... 92 1e-17 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 92 1e-17 UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. ... 92 1e-17 UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 92 1e-17 UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 92 1e-17 UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO ... 92 1e-17 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 92 1e-17 UniRef50_A0Y082 Pseudouridine synthase n=2 Tax=Alteromonadales R... 92 2e-17 UniRef50_Q2LVB7 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 92 2e-17 UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeu... 92 2e-17 UniRef50_UPI00016B2413 ribosomal large subunit pseudouridine syn... 92 2e-17 UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae R... 92 2e-17 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 92 2e-17 UniRef50_B9XDK1 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 92 2e-17 UniRef50_B7PYG1 Ribosomal pseudouridine synthase, putative n=1 T... 92 2e-17 UniRef50_Q7UUI8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 92 2e-17 UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 92 2e-17 UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae Rep... 92 2e-17 UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 92 2e-17 UniRef50_B0PEI9 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0... 92 2e-17 UniRef50_Q5WF07 Pseudouridine synthase n=1 Tax=Bacillus clausii ... 92 2e-17 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 91 3e-17 UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 91 3e-17 UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veil... 91 3e-17 UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 91 3e-17 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 91 3e-17 UniRef50_B1MWE1 Pseudouridine synthase n=3 Tax=Leuconostoc RepID... 91 4e-17 UniRef50_A0L7F8 Pseudouridine synthase n=6 Tax=Proteobacteria Re... 91 4e-17 UniRef50_C1TRW2 Pseudouridine synthase n=1 Tax=Dethiosulfovibrio... 91 4e-17 UniRef50_B9MS57 Pseudouridine synthase n=1 Tax=Anaerocellum ther... 91 4e-17 UniRef50_C8WV14 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 91 4e-17 UniRef50_B8GX34 Pseudouridine synthase n=7 Tax=Caulobacteraceae ... 91 4e-17 UniRef50_Q0VQA6 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 91 4e-17 UniRef50_Q2CAH0 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 91 4e-17 UniRef50_D2QLU1 Pseudouridine synthase n=53 Tax=Bacteroidetes Re... 91 5e-17 UniRef50_Q38Y05 Pseudouridine synthase, 23S-rRNA-specific n=1 Ta... 91 5e-17 UniRef50_P59831 Ribosomal large subunit pseudouridine synthase A... 91 5e-17 UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desu... 91 6e-17 UniRef50_C7GZU4 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 91 6e-17 UniRef50_UPI00016C4782 RNA pseudouridylate synthase n=1 Tax=Gemm... 91 6e-17 >UniRef50_Q47417 tRNA pseudouridine synthase C n=252 Tax=cellular organisms RepID=TRUC_PECCC Length = 376 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/257 (70%), Positives = 209/257 (81%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEI+YQDE LVAVNKPSGWLVHRSWLDR EKVVVMQTVRDQIGQHV+T HRLDRPTSGV Sbjct: 115 MLEIIYQDEHLVAVNKPSGWLVHRSWLDRKEKVVVMQTVRDQIGQHVYTVHRLDRPTSGV 174 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 LL+ LSSE R L+QQFE HQ+QK YHA+VRG+++++ V+DY L EELDKIADKF DK Sbjct: 175 LLLALSSEVARALSQQFESHQMQKTYHAVVRGYVLDDGVIDYALTEELDKIADKFTNPDK 234 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQPAVTHYR LA EMPVA GRYPT RY L+EL+P+TGRKHQLRRH++H+ HPIIGD+ Sbjct: 235 APQPAVTHYRSLAQAEMPVAIGRYPTARYSLMELKPQTGRKHQLRRHMSHIHHPIIGDTA 294 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 HGDLR NR HF RLMLHAS+L L HP +G+PLT+ A D W ++QFGW+G+L Sbjct: 295 HGDLRHNRGMESHFSCGRLMLHASELQLNHPVSGQPLTLQARWDAPWQGVVTQFGWKGIL 354 Query: 241 PENERVEFSAPSGQDGE 257 PE E VEF A SGQD E Sbjct: 355 PEFEGVEFPADSGQDSE 371 >UniRef50_Q8DBG5 tRNA pseudouridine synthase C n=54 Tax=Gammaproteobacteria RepID=TRUC_VIBVU Length = 245 Score = 299 bits (766), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 143/240 (59%), Positives = 175/240 (72%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEI+YQDE+ VAVNKP+G LVHRSWLD+ E VMQT+RDQIGQHVF HRLDRPTSGV Sbjct: 1 MLEIVYQDEYFVAVNKPAGMLVHRSWLDKHETQFVMQTLRDQIGQHVFPLHRLDRPTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L+ LSSE + F ++ K YHAIVRGW+ EE LDY L ELDKIADKFA ++K Sbjct: 61 LVFALSSEVASQVMPMFAGQEMSKTYHAIVRGWIEEEGELDYALKVELDKIADKFASQEK 120 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 Q A+T Y+ LA VE+P +T ++PTTRYGL+EL+PKTGRKHQLRRH+AHLRHPI+GD+ Sbjct: 121 EAQDAITLYKPLAKVEVPYSTSKFPTTRYGLMELKPKTGRKHQLRRHMAHLRHPIVGDTT 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 HGD + N+ E F RL+LHAS+L HP+T + + I A +D W Q +F W L Sbjct: 181 HGDGKHNKLFREEFDAPRLLLHASELRFVHPYTQQEVVIRAEVDKVWQQLFERFEWPSTL 240 >UniRef50_B8CQ92 Pseudouridine synthase n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CQ92_SHEPW Length = 278 Score = 265 bits (678), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 126/235 (53%), Positives = 160/235 (68%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +EIL++D+ +VA++KP+G LVHRS+L R E+ MQ RD++G HVF HRLDRPTSG+L Sbjct: 27 IEILFEDDDVVAIHKPAGLLVHRSYLARRERFFAMQLTRDKVGCHVFPVHRLDRPTSGIL 86 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L SSE L +QF H I K Y AIVRG + E A LDY L EELD +ADK +K Sbjct: 87 LFAKSSEMANALCEQFAAHSIDKEYLAIVRGNMHEAATLDYALKEELDDVADKDVDPNKA 146 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A+T Y+ L E+P A+GRY T+RY LV L P TGRKHQLRRH+AHLRHPI+GD+ H Sbjct: 147 AQDAITSYKPLLNSEIPYASGRYATSRYALVHLSPHTGRKHQLRRHMAHLRHPILGDTTH 206 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD +QN+ EHFG+ RL L A +LS HP TGE + + L+ W+ + GW Sbjct: 207 GDGKQNKFFREHFGINRLWLIAKKLSFNHPRTGERVAVETELEQEWITLFDELGW 261 >UniRef50_Q15QZ8 Pseudouridine synthase n=5 Tax=Bacteria RepID=Q15QZ8_PSEA6 Length = 252 Score = 259 bits (662), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 129/251 (51%), Positives = 163/251 (64%), Gaps = 2/251 (0%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L ILYQDE LVA++KP+G LVHRS +DR E MQ +RDQIGQHVF HRLDRPTSGVL Sbjct: 3 LTILYQDECLVAIHKPAGLLVHRSMIDRHETQFAMQMLRDQIGQHVFPVHRLDRPTSGVL 62 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 + LS++ RLL +QF + I K Y AIVRG + E ++DY L E+LDKIADK A++DK Sbjct: 63 VFALSADIARLLGEQFAGNTIAKTYFAIVRGHVKEAGLIDYALKEKLDKIADKRAKQDKD 122 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A T Y L E+P A RYP+ RY LV L PKTGRKHQLRRH+ H+ HPI+GD+ H Sbjct: 123 AQEAQTEYVPLQQFELPFAVSRYPSARYTLVRLHPKTGRKHQLRRHMCHINHPIVGDTTH 182 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLP 241 GD + N+ + F L L Q+ +THP + E L I D + Q+GW LP Sbjct: 183 GDGKHNKFMRDQFSFNGLALTCQQMCMTHPVSNEKLAIVNDFDQRMSTLMVQWGWE--LP 240 Query: 242 ENERVEFSAPS 252 +R++ + S Sbjct: 241 SLDRLDLLSNS 251 >UniRef50_Q30SZ1 Pseudouridine synthase n=2 Tax=Proteobacteria RepID=Q30SZ1_SULDN Length = 241 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/236 (51%), Positives = 166/236 (70%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILYQDE LVA+NKPSG LVHRS +DR E +QT+R+Q+G+ V+ HRLD+PTSGV Sbjct: 1 MLEILYQDEHLVAINKPSGLLVHRSPIDRHETEFAIQTLRNQLGRFVYPIHRLDKPTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 LL L E+ +++ ++F H+ +K Y A+VRG+ ++ +DY L + DKIADK + DK Sbjct: 61 LLFALDKESAKIMGEKFMAHEAKKSYIAVVRGYTLQSGEIDYALSIKFDKIADKDSSSDK 120 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQ A+THY+ LATVE+ G+Y TRY LV+L P TGRKHQLRRH+ H+ H I+GD+K Sbjct: 121 EPQEALTHYKRLATVELDFEVGKYDKTRYSLVKLNPLTGRKHQLRRHMKHISHHILGDTK 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 +G N+ + FG R++LHA L ++HP+T E L I A LD T+++ S FGW Sbjct: 181 YGRGEHNKLIRQEFGCHRMLLHAIALEISHPYTKELLYIKAPLDVTFIEMFSFFGW 236 >UniRef50_C8PZW5 Pseudouridine synthase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZW5_9GAMM Length = 266 Score = 256 bits (653), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 137/263 (52%), Positives = 166/263 (63%), Gaps = 27/263 (10%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILYQDE VAVNKP+G LVHRSWLDR E VMQT+RDQ+ Q+V+ HRLDRPTSGV Sbjct: 1 MLEILYQDEHCVAVNKPAGMLVHRSWLDRHETEFVMQTLRDQLAQYVYPIHRLDRPTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA----VLDYPLVEELDKIADK-- 114 LL LSSE+ R L +QFE Q+QK Y AIVRG+L A ++DYPL + LDKI DK Sbjct: 61 LLFALSSESARQLCEQFENRQVQKSYLAIVRGYLTVNAQTSGLIDYPLTQILDKIGDKPS 120 Query: 115 --------------FAREDKGP------QPAVTHYRGLATVEMPV-ATGRYPTTRYGLVE 153 FA P QPA TH++ LAT E P A RYPT+R+ L Sbjct: 121 LQALQQRKVSSTDMFAEALSSPAELTLLQPAQTHWQCLATTEQPFQARARYPTSRFSLAR 180 Query: 154 LEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFT 213 L P TGRKHQLRRH+ H+ HPIIGD+ +GD QNR+ +H G+ RLMLHA L+ Sbjct: 181 LTPITGRKHQLRRHMKHVFHPIIGDTSYGDHHQNRAIRQHIGVHRLMLHAHTLAFNRLTD 240 Query: 214 GEPLTIHAGLDDTWMQALSQFGW 236 + I A +D W+ +QFG+ Sbjct: 241 NRRVDITAPVDTDWLTMCAQFGF 263 >UniRef50_UPI0001AEC02F pseudouridylate synthase, 23S RNA-specific n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC02F Length = 279 Score = 249 bits (636), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 119/236 (50%), Positives = 157/236 (66%), Gaps = 3/236 (1%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L +LYQDE ++A+ KP G LVHRS +DR E V +QT+RDQIGQHV+ AHRLDRPTSGVL Sbjct: 42 LPVLYQDEHIIAIEKPPGLLVHRSPIDRHETVFAVQTLRDQIGQHVYPAHRLDRPTSGVL 101 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 + SSE L QQ Q+ K YHAIVRG++ +DY L DKIADK R + Sbjct: 102 VFSFSSEIAAKLGQQMMDKQVVKTYHAIVRGFVHHTGYIDYALKYRYDKIADKHKRPQQP 161 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 PQPA T Y+ +A E+P G+Y + RY LV+L P TGRKHQLRRH+ H+RHPIIGD+ H Sbjct: 162 PQPASTMYQSVAKFEVPEPVGKYQSARYSLVKLSPSTGRKHQLRRHMVHIRHPIIGDTTH 221 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDT---WMQALSQF 234 GD +QN+ +HF L L +Q+ +HP TG+ ++I++ + W++ L+ F Sbjct: 222 GDGKQNKFAKQHFNFNNLALSCTQMGFSHPVTGKWVSINSQMHSEMRLWLEKLAPF 277 >UniRef50_C5TPY8 Pseudouridine synthase n=6 Tax=Proteobacteria RepID=C5TPY8_NEIFL Length = 264 Score = 249 bits (636), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 127/235 (54%), Positives = 161/235 (68%), Gaps = 3/235 (1%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 ML+I+++D +AVNKP+G LVHRSWLD+ E +QT+RDQIGQHV+ HRLDRPTSGV Sbjct: 27 MLDIIHRDSRTIAVNKPAGMLVHRSWLDKHETRFAVQTLRDQIGQHVYPVHRLDRPTSGV 86 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 LL L +EA RLL QQFE I+K Y AIVRG+L + ++DY L DKIA+ A+ + Sbjct: 87 LLFALDTEAARLLTQQFENKTIEKTYWAIVRGYLPSDGLIDYALKYMPDKIAE--AQTEA 144 Query: 121 GPQPAVTHYRGLATVEMPVATG-RYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 Q A T YR LA E+P + RYPT+RY EL P TGRKHQLRRH+ H+ HPI+GD+ Sbjct: 145 TLQEAQTAYRCLAQTELPFQSALRYPTSRYSWAELTPYTGRKHQLRRHMKHIFHPIVGDT 204 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +GDLRQN + AEH G QRLMLHA LS G +T++A D+ W + +F Sbjct: 205 NYGDLRQNHAVAEHIGTQRLMLHARSLSFQSIEDGSRITVNAPTDNDWRLWMEKF 259 >UniRef50_Q39Z12 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=Q39Z12_GEOMG Length = 270 Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 123/243 (50%), Positives = 160/243 (65%), Gaps = 1/243 (0%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +EILY+DE LVAV+KP G LVHRS +DR E +Q VRD +G+ V+ HRLD+PTSGVL Sbjct: 1 MEILYRDEHLVAVHKPLGLLVHRSPIDRHETRFALQEVRDLLGRRVYPVHRLDKPTSGVL 60 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE-DK 120 L L R L F + K Y A+VRG + EE V+D+PL EE D+ ++ Sbjct: 61 LFALDPAFARGLVGAFASGSVTKTYLAVVRGTMPEEGVIDHPLAEEPDRFEQGRGNAGER 120 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQ AVT YR LA VE+PVA GRYPT+RY LV L P+TGR+HQLRRHL HL HPI+GD+K Sbjct: 121 APQSAVTGYRRLADVELPVAVGRYPTSRYSLVSLSPRTGRRHQLRRHLKHLFHPIVGDTK 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 +G+ R NR E R++LHA +L++ HP TG PLT+ A ++ + L++FGW + Sbjct: 181 YGEGRHNRFFREELLTVRMLLHAVELTVPHPATGAPLTVCAPVEGAFAALLARFGWLSAV 240 Query: 241 PEN 243 P Sbjct: 241 PSR 243 >UniRef50_B4RVP9 Pseudouridine synthase n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RVP9_ALTMD Length = 265 Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 114/222 (51%), Positives = 148/222 (66%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L +LYQDE ++A++KP G LVHRS +D+ E V +QT+RDQIGQHVF AHRLDRPTSGVL Sbjct: 28 LPVLYQDEHIIAIDKPPGLLVHRSPIDKHETVFAVQTLRDQIGQHVFPAHRLDRPTSGVL 87 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 + S++ L +Q Q+ K+YHAIVRG++ +DY L DKIADK R + Sbjct: 88 VFSFSADTAAKLGKQMMDKQVVKQYHAIVRGFVHHTGYIDYALKYRYDKIADKHKRPQQP 147 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 PQPA T Y LA ++P GRY + RY LV L P TGRKHQLRRH+ H+RHPIIGD+ H Sbjct: 148 PQPASTMYESLAKFDVPEPVGRYQSARYSLVRLSPSTGRKHQLRRHMVHIRHPIIGDTTH 207 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 GD +QN+ HF L L +Q+ +HP T + +TI+ + Sbjct: 208 GDGKQNKFAKSHFNFTHLALSCTQMGFSHPVTQKWITINGEM 249 >UniRef50_B5JL25 Pseudouridine synthase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JL25_9BACT Length = 249 Score = 237 bits (605), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 122/230 (53%), Positives = 154/230 (66%), Gaps = 3/230 (1%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEILY+DE LVA++KPSG LVHRS +DR E +Q +RDQIGQHV+ AHR+DRPTSG+L Sbjct: 14 LEILYRDERLVAIHKPSGLLVHRSPIDRRETRFAIQLLRDQIGQHVYPAHRIDRPTSGIL 73 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L GL AG L+ F+ +IQK Y A+ RG L E ++D PL + D AD + + Sbjct: 74 LFGLDEAAGTALSLLFQNREIQKNYLAVTRGHLPESGLIDSPLHKYED--ADGHIKSSET 131 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A T YR LAT E+P T RY TTRY LVEL P TGR+HQ+RRHLAH+RHPIIGD +H Sbjct: 132 -QEAETAYRRLATTELPYPTERYDTTRYSLVELTPHTGRRHQIRRHLAHIRHPIIGDVRH 190 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 G + N+ HF + RL+L A+ + HPFT PL IH + ++ AL Sbjct: 191 GCNKANKLARSHFAIHRLLLAATHVVFVHPFTNAPLKIHCPPETSFQTAL 240 >UniRef50_Q31IZ8 Pseudouridine synthase n=2 Tax=Proteobacteria RepID=Q31IZ8_THICR Length = 252 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/236 (48%), Positives = 153/236 (64%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +ILYQD+ LVAV+KP+G LVHRS +DR E +Q RDQI Q V+ HRLD+ TSG+L Sbjct: 10 FKILYQDDSLVAVHKPAGLLVHRSPIDRHETQFAVQMTRDQINQKVYPLHRLDKATSGLL 69 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L L S RL+ QQFE+H IQK Y AI RGW E +D+ L +LDK+ D+ A+ +K Sbjct: 70 LFALDSNTARLMGQQFEEHTIQKHYLAICRGWTAEHGEIDHALKHKLDKLGDRHAQTNKP 129 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 PQ A+T++ LAT ++ G++ + RY LV+L PKTGRKHQLRRHL H+ HPIIGD K+ Sbjct: 130 PQEALTNFERLATTDVMHKIGKFDSQRYSLVKLMPKTGRKHQLRRHLNHISHPIIGDVKY 189 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 GD N G RL L A+ L+ HP T +T++A L+ ++ +A W+ Sbjct: 190 GDRHHNHFFNTWLGQHRLYLAATSLTFNHPQTNARMTLNAPLELSYQKATQHLNWQ 245 >UniRef50_C4KBT4 Transaldolase n=2 Tax=Proteobacteria RepID=C4KBT4_THASP Length = 648 Score = 226 bits (577), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 127/272 (46%), Positives = 165/272 (60%), Gaps = 24/272 (8%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILY+D+WLVA++KPSG LVHRS + E+ +Q +RDQ+G+ V+ AHRLDR TSGV Sbjct: 1 MLEILYRDDWLVAIHKPSGLLVHRSPIAAHEERFAVQLLRDQLGRRVYPAHRLDRGTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIA-------- 112 LL L E R LAQ+FE + KRY A+VRG E V+++ LV LD + Sbjct: 61 LLFALDREVARTLAQRFEAQAVDKRYLAVVRGHPPEHGVIEHALVRRLDAVEVRSGKGAG 120 Query: 113 ----------DKFAREDKGP--QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR 160 D + E P QPA T +R LATVE+P A RYP++RY LVEL P+TGR Sbjct: 121 ARDALPEDVDDSDSPEAAEPVAQPARTRFRRLATVELPHAVDRYPSSRYALVELLPETGR 180 Query: 161 KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH 220 +HQLRRHL H+ HPIIGD+ +G R NR FG RL+L ++L+L HP T PL I Sbjct: 181 RHQLRRHLKHIAHPIIGDATYGKGRHNRLFQALFGSHRLLLACTRLALAHPVTERPLEIV 240 Query: 221 AGLDDTWMQALSQFGWRGLLPENERVEFSAPS 252 A + + + L+ GW+ +R F A S Sbjct: 241 APVAEDFAAVLAALGWQ----TAQRSTFEAES 268 >UniRef50_A1K5H7 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A1K5H7_AZOSB Length = 260 Score = 226 bits (575), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 118/242 (48%), Positives = 152/242 (62%), Gaps = 4/242 (1%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILYQDE LVA++KPSG LVHRS LD E+ +Q +RDQ+G+HV HRLD+ TSGV Sbjct: 1 MLEILYQDEHLVAIHKPSGLLVHRSALDAHEERFAVQLLRDQLGRHVHPVHRLDKGTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L+ L + LA QFE ++K+Y AIVRG E +D+PL D + + EDK Sbjct: 61 LVFALDRDTAGRLATQFETRAVRKQYVAIVRGHPAEAGTIDHPLSRRFDPV--EHVAEDK 118 Query: 121 --GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 PQPA+T +R LAT E+P A RYPT+RY L+ LEP+TGR+HQ+RRHL H+ HPIIGD Sbjct: 119 VFAPQPAITRFRRLATAELPWAVDRYPTSRYALLALEPETGRRHQIRRHLKHISHPIIGD 178 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 S G + NR HFG +R++L + + L HP PL +HA + GW Sbjct: 179 STFGKGKHNRMFQAHFGSERMLLACTDIELRHPQRDAPLQLHAAPAPDFRAVADALGWHD 238 Query: 239 LL 240 L Sbjct: 239 AL 240 >UniRef50_Q47Y03 Pseudouridine synthase n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47Y03_COLP3 Length = 304 Score = 223 bits (569), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 112/282 (39%), Positives = 157/282 (55%), Gaps = 46/282 (16%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 +L+ILYQDE++VAV+KP+G VHRS++D+DE +Q VRDQ+GQ+V+ HRLDRPTSGV Sbjct: 20 VLDILYQDEYMVAVDKPAGLFVHRSYMDKDEIYFALQLVRDQVGQYVYPVHRLDRPTSGV 79 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQ------------------------------------- 83 LL L+ + L++ F Q Sbjct: 80 LLFALTKDVATKLSEAFANKSSQAEFKSDTELEGKVHDKTQTGQQGQQSMTEGLTTDKNI 139 Query: 84 --------KRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLAT 134 K Y+A+ RG L + ++D+PL E+LDK+ DK DK Q A ++Y+ Sbjct: 140 DGSDLAMVKTYYALARGHLAVPVDLIDHPLKEKLDKLGDKNVSRDKPAQSAQSYYQVKQQ 199 Query: 135 VEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHF 194 +P+ G++ + RY L+E+ P TGR+HQ+RRHLAHLRHPI+GD +GD +QN EHF Sbjct: 200 ASLPIKVGKFDSVRYSLIEVRPITGRRHQIRRHLAHLRHPILGDINYGDNKQNPFFIEHF 259 Query: 195 GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 G +RLML A L HP + + I A D+ W Q + F W Sbjct: 260 GFKRLMLIAKSLEFNHPINNDRIKISAPFDEQWQQVFTTFEW 301 >UniRef50_A1U2H1 Pseudouridine synthase n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U2H1_MARAV Length = 245 Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 115/231 (49%), Positives = 153/231 (66%), Gaps = 3/231 (1%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-QHVFTAHRLDRPTSGVLLM 63 +Y+D+WL+AV+KP+G LVHRS +D+ E +Q R G +HV+ HRLDRPTSGVLL Sbjct: 8 IYRDDWLLAVHKPAGLLVHRSPIDKHETEFALQYARAMNGGEHVYPVHRLDRPTSGVLLF 67 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 E R L + K Y A+VRGW E+ V+D+PL EE + + +++ + Sbjct: 68 ARDPETARALGLAMMAGAVSKTYLAMVRGWAPEQGVIDHPLREEPED--RRLKGQEQPVR 125 Query: 124 PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD 183 A+T YR LAT E+PVA RYPT+RY LVEL+P+TGRKHQLRRH+ H+ HPIIGD+ HG Sbjct: 126 EALTRYRRLATTELPVAIERYPTSRYSLVELKPETGRKHQLRRHMKHINHPIIGDANHGR 185 Query: 184 LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 R NR AE FG RLML A++L L HP T EPL + A + +++Q L+ F Sbjct: 186 GRHNRYFAERFGQGRLMLAATELRLRHPVTDEPLCLKAHPESSFLQVLAIF 236 >UniRef50_D2QPA6 Pseudouridine synthase n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QPA6_9SPHI Length = 244 Score = 215 bits (548), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 110/220 (50%), Positives = 141/220 (64%), Gaps = 6/220 (2%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L ILYQD LVA+NKP G LVHRS + D +Q +RDQ+GQ V+ HRLDR T+GVL Sbjct: 11 LSILYQDTELVAINKPHGLLVHRSMIASDASEFAVQLLRDQLGQRVYPVHRLDRKTAGVL 70 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L LS ++ QQF + +QK Y AIVRG+ +E +DYPL ++ A +E Sbjct: 71 LFALSESMNAIMQQQFMEGAVQKTYLAIVRGYTPDELTIDYPLCKDDGNGAVGVLQE--- 127 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 AVTH + L E+PVA G++PT+RY LVEL P TGR HQLRRH+AH+ HPIIGD H Sbjct: 128 ---AVTHLKTLRQTEIPVAFGKHPTSRYSLVELTPTTGRMHQLRRHMAHILHPIIGDRPH 184 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 G +QN+ EHF + ++LHA ++ THP T E TI A Sbjct: 185 GCNKQNKLFKEHFEMNTMLLHAQRIEFTHPVTQETTTIAA 224 >UniRef50_Q1N5G6 Pseudouridine synthase n=1 Tax=Bermanella marisrubri RepID=Q1N5G6_9GAMM Length = 236 Score = 213 bits (543), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 109/234 (46%), Positives = 147/234 (62%), Gaps = 7/234 (2%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILYQD+ L+A+NKPSG LVH+SW+ +D K +Q VRD G+HVF HRLDRPTSGVLL Sbjct: 9 ILYQDDDLIAINKPSGLLVHKSWVAKDAKEFALQIVRDMSGKHVFPVHRLDRPTSGVLLF 68 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 G S E + + Q+EQ K Y A+VRGWL E+ ++D+ L D + ++ + Q Sbjct: 69 GFSGEIAQQVQAQWEQ--ANKTYWAVVRGWLKEQTLVDHALKGMAD-----YGQDVEIVQ 121 Query: 124 PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD 183 A TH++ + VE+ RYP +R+ VE +PK GR HQ+RRHL HL HPIIGD+++G Sbjct: 122 EAQTHFKPIDYVEIDAEIDRYPKSRFSWVEAKPKQGRTHQIRRHLKHLSHPIIGDARYGK 181 Query: 184 LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 + NR EH+ RL+LH QL +THP +G L I A L+ S F W+ Sbjct: 182 GKYNRYITEHYDCPRLLLHHQQLEMTHPVSGSKLMITAPLEGAMQSLFSTFDWK 235 >UniRef50_A4BJ00 Pseudouridine synthase n=1 Tax=Reinekea blandensis MED297 RepID=A4BJ00_9GAMM Length = 249 Score = 213 bits (541), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 107/240 (44%), Positives = 145/240 (60%), Gaps = 5/240 (2%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH-----VFTAHRLDRP 56 L I+Y+D+ L+ V+KPSG L+H SWLDR E + + + Q V T HRLDRP Sbjct: 4 LNIVYEDDVLLVVDKPSGLLMHPSWLDRRETDTLAGRAKAYLAQQSEGAKVHTVHRLDRP 63 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 TSG+++M A + L +QF++ + KRY AI RG+ LDYPL+EE D+IADKFA Sbjct: 64 TSGLVVMCKDDHAAKALVEQFQEKTVNKRYWAICRGFAPVAETLDYPLIEEHDRIADKFA 123 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 DK Q A+T +R L E+ + RYP R +E P TGRKHQ+RRHL HLR+PI+ Sbjct: 124 DSDKPAQEAITEFRRLGITELAIPVSRYPKMRLSWMECVPVTGRKHQIRRHLKHLRYPIL 183 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD++HG NR+ FG + L A ++S HP T E +T + G D+ W L + GW Sbjct: 184 GDTRHGCRHLNRAVEGSFGELFMGLRAVEMSFQHPVTNELMTFNVGADNVWSCWLDRLGW 243 >UniRef50_C0Q9S8 TruC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9S8_DESAH Length = 260 Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 111/235 (47%), Positives = 138/235 (58%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEILYQDE LVAVNKP G LVHR+ L E +Q VRDQ HVF HRLDRPT GVL Sbjct: 13 LEILYQDEDLVAVNKPPGLLVHRTALATHETRFALQMVRDQTQGHVFPVHRLDRPTQGVL 72 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L + ++ F+ +IQK Y A+VRG + E + +PL +K Sbjct: 73 LFARNRNMATRMSHLFQTGKIQKTYLAVVRGHVKERGTIVHPLKNIKHPQDNKRINHSLK 132 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 AVT Y LA+VE+P RYPTTRY LV L PKTGR+HQLRRH+ H+ HPI+GD+ + Sbjct: 133 IDDAVTDYACLASVELPFYVDRYPTTRYCLVALIPKTGRRHQLRRHMKHISHPIVGDTVY 192 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 G NR A H L+L A +L HP TG +TI A LD + + +S+F W Sbjct: 193 GKSSHNRFFATHLNCTGLLLAARELCFVHPDTGIFITITAPLDKRFQEVISKFSW 247 >UniRef50_A9BZ16 Pseudouridine synthase n=9 Tax=Burkholderiales RepID=A9BZ16_DELAS Length = 319 Score = 207 bits (526), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 124/270 (45%), Positives = 157/270 (58%), Gaps = 18/270 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L IL++DE LVAV KP+GWLVHR+ LD E V+QT+RDQ+G HV+ AHRLD+ T GVL Sbjct: 51 LHILWRDEHLVAVYKPAGWLVHRTGLDAHETRFVLQTLRDQLGCHVYPAHRLDKGTCGVL 110 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 +M L ++A + L Q F +++K+Y A+VRGWL + +D+ L + A ED Sbjct: 111 VMALHAQAAQRLGQAFAGQEVRKQYLALVRGWLPDAVEVDHALRPD-------DAPEDAP 163 Query: 122 PQPAVTHYRGLATVEMPVA-TGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 QPA T R LA +E P A R+ TR LVE P TGR+HQ+RRHL H+ HPIIGD+ Sbjct: 164 AQPAQTSLRCLARLEWPEAFDPRHAATRISLVEALPATGRRHQIRRHLKHVAHPIIGDAT 223 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTI--------HAGLDDTWMQALS 232 HG NR AE GLQRL LHA L L HP TGEPL H W + Sbjct: 224 HGKGPLNRWWAERLGLQRLWLHAHALELAHPMTGEPLRFEADWRQLGHVADVQHWRALCA 283 Query: 233 QFGWRGL--LPENERVEFSAPSGQDGEISS 260 GW+ LP R + +A +G G S Sbjct: 284 LPGWQACAGLPATARPDQTASAGAPGSGCS 313 >UniRef50_C6VVP1 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C6VVP1_DYAFD Length = 228 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 144/235 (61%), Gaps = 11/235 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEILY+ + LVA+NKP+G LVHRS + D V +Q +RDQ+ Q V+ AHRLDR TSGVL Sbjct: 4 LEILYRSDDLVAINKPNGLLVHRSPIASDADVFAVQLLRDQLSQKVYPAHRLDRKTSGVL 63 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L L+ + +F + +I K YHAIVRG + +DYPL R+D Sbjct: 64 LFALNENVNSEMQGKFMEGEITKTYHAIVRGHTADRGEIDYPL-----------KRDDGV 112 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q AVTH+ LA E+P A G++ T+RY LV+L P TGR HQLR+H+AH+ HPIIGD H Sbjct: 113 TQDAVTHFETLARAEVPFALGKHATSRYSLVQLNPLTGRMHQLRKHMAHIMHPIIGDRPH 172 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 G +QNR E G+ ++MLHA + HP +G+ +TI A +++ S G Sbjct: 173 GCNKQNRFFKEELGMIQMMLHAVSVEFVHPVSGQHVTIVAPYLSEFVRMRSVLGL 227 >UniRef50_Q1QTG8 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q1QTG8_CHRSD Length = 261 Score = 199 bits (506), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 112/241 (46%), Positives = 149/241 (61%), Gaps = 6/241 (2%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L +LYQDE +VAV KPSG LVHRS + RD +V +QT+R+Q+G+HV+ HRLDRPTSG+L Sbjct: 5 LPVLYQDERMVAVQKPSGMLVHRSPIARDARVFALQTLRNQLGRHVYPVHRLDRPTSGLL 64 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L L E + L ++F H++ KRY A+VRG E+ +LDY L EE D + + Sbjct: 65 LFALDPEMAQALGEEFTAHRVHKRYLAVVRGVGPEQDLLDYGLREE-----DGSRPKAEM 119 Query: 122 PQ-PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 P+ A T R L +VE+PV RYP RY L+E P TGR+HQ+RRHLA +PIIGD+K Sbjct: 120 PELEAWTAVRRLDSVELPVRIDRYPQVRYSLMEARPWTGRRHQIRRHLARRGYPIIGDAK 179 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 HG NR E RL+L A +++ HP L + A L D ++FGW+G Sbjct: 180 HGKGAHNRFFRERLDSPRLLLAAVGMTVWHPEQARTLQLDAPLADDMQALFARFGWQGHA 239 Query: 241 P 241 P Sbjct: 240 P 240 >UniRef50_A6VXE8 Pseudouridine synthase n=2 Tax=Marinomonas RepID=A6VXE8_MARMS Length = 242 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/236 (43%), Positives = 145/236 (61%), Gaps = 1/236 (0%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L+IL+QDE LVAVNKP+G LVHR+ L +DE+ V+Q +RDQ G+ VF HRLDR TSGVL Sbjct: 3 LDILFQDEHLVAVNKPAGLLVHRTNLAKDEEDAVVQRLRDQTGKWVFPVHRLDRGTSGVL 62 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 +M S E R L+ QF + + QK YH +VRG+ E V++YPL + ++ + + Sbjct: 63 VMAFSPEVARRLSTQFAESKTQKTYHCLVRGYCNESGVINYPLAKLNEQKGRSRFKIEGT 122 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + A T + L ++PV RY + R +E+ PK GRKHQ+RRH H +P++GDS + Sbjct: 123 EREAETGFTRLIQYQLPVPVSRYDSMRLSWLEVTPKQGRKHQIRRHFKHHLNPLVGDSCY 182 Query: 182 GDLRQNRSGAEHFGLQ-RLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 G N+ E + RLMLHAS L HP T +P+T+ A L D + L++ + Sbjct: 183 GCRHINKVAKELWSEDFRLMLHASSLEFNHPITNQPITLKADLSDKIINILNKLEY 238 >UniRef50_A1WTN6 Pseudouridine synthase n=2 Tax=Ectothiorhodospiraceae RepID=A1WTN6_HALHL Length = 249 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 110/242 (45%), Positives = 147/242 (60%), Gaps = 10/242 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH-VFTAHRLDRPTSGV 60 L ILY+DE L+AV KP+G LVHRS +DRD VV +Q +RDQ+G H V+ HRLDR T+GV Sbjct: 11 LAILYRDERLIAVYKPAGLLVHRSNIDRDRDVV-LQRLRDQLGGHWVYPVHRLDRATAGV 69 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L+ GL +A +LA F + +I KRY A+VRGW+ +D PL Sbjct: 70 LVFGLDPDAASVLAAAFREQRIGKRYQAVVRGWVEAPGRIDRPLGAGRRGEG-------G 122 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQPAVT Y LA E+P+ RY T R+ + L P+TGR+HQLRRH+ + HPI+GD+ Sbjct: 123 APQPAVTDYVPLAWTELPIPVSRYDTARFTRLALHPQTGRQHQLRRHMKAISHPILGDTT 182 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 HGD NR EHFG +RL+L A++L + HP G + + A D +QA+ + G Sbjct: 183 HGDGANNRFFREHFGARRLLLVATELVVPHPADGGAVRL-ATEPDAELQAIFRRAGLGEA 241 Query: 241 PE 242 P Sbjct: 242 PS 243 >UniRef50_A3HSB5 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HSB5_9SPHI Length = 237 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 104/238 (43%), Positives = 142/238 (59%), Gaps = 12/238 (5%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L IL++D+ ++A+NKP+G LVHR+ + E V +Q +RDQIG HV HRLDRPTSG+L Sbjct: 3 LPILFEDDSIIAINKPAGLLVHRTSIAAQETVFALQILRDQIGMHVHPVHRLDRPTSGIL 62 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAREDK 120 L E L F + QI+K Y IVRG ++A++D+PL E Sbjct: 63 LFAKKEEILPHLKNLFSERQIKKNYLTIVRGIPEQKKALIDHPLKSE----------RSG 112 Query: 121 GPQPAVTHYRGLATVEMPV-ATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 Q A T Y+ ++ E+P TGRYPT+RY L+ + P+TGR HQ+RRHLAH+RH IIGD Sbjct: 113 RLQEAQTWYKVISETEIPFDTTGRYPTSRYSLLSVNPETGRTHQIRRHLAHIRHYIIGDK 172 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 KHGD +QN FGL+ L+LHA +LS HP T E + I + + + L + Sbjct: 173 KHGDNKQNIFFQNQFGLENLLLHAIRLSFNHPITEETIEISCPVPEHFQSILKSLNLQ 230 >UniRef50_A6DMG7 tRNA pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMG7_9BACT Length = 246 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 105/245 (42%), Positives = 144/245 (58%), Gaps = 12/245 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-QHVFTAHRLDRPTSGV 60 ++ LY+DE+LV K + VHRS + RD + + + VR+++G Q+V+ HRLDRP SG Sbjct: 7 VKFLYEDEYLVVAKKLAKISVHRSEMCRDRRTL-LTMVRNKLGGQYVYAVHRLDRPVSGP 65 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 LL S E R L +QF + ++K+Y A+VRGWL + +D L++ + + Sbjct: 66 LLFAKSPEMCRELQKQFNEKTVEKKYIALVRGWLEGKGKVDKQLLK----------KSNG 115 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 Q +T YRGLAT E+ G++PT RYGLVELEP TGR HQLRRH+ L +PIIGDS Sbjct: 116 TIQDCLTRYRGLATAEIDEPLGKFPTVRYGLVELEPVTGRYHQLRRHMRDLAYPIIGDST 175 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 GD QNR E F L+RLMLH LS HP + E + I+ D ++ Q G Sbjct: 176 DGDSHQNRFFREKFELRRLMLHCFYLSFKHPVSQELIKIYLEPDRDLLRIYEQLGMYEQF 235 Query: 241 PENER 245 + ER Sbjct: 236 KQLER 240 >UniRef50_C7LP91 Pseudouridine synthase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LP91_DESBD Length = 245 Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 12/239 (5%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 + +L++DE L+AV+KP+G LVHR+ E + +Q +RDQ+GQ ++ HRLDRPTSG++ Sbjct: 9 IPVLHRDEHLIAVHKPAGLLVHRNAHAGREPFL-LQILRDQLGQRLYPVHRLDRPTSGLM 67 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 +M LS +A LA QF ++ K Y A+ RG++ + ++D D E Sbjct: 68 IMALSPQAAHALALQFASQEVHKTYLAVTRGFVPPQGLID-----------DALKSESGS 116 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A T + LAT E+P G PT RY +V + P+TGR HQ+RRH AH+RHP+IGD Sbjct: 117 LQEARTEFTRLATAEIPHPVGPNPTARYSMVRVRPRTGRTHQIRRHFAHIRHPLIGDVLR 176 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 GD RQNR +HFGL RL+L + +L+ HP P+T+ + Q GW + Sbjct: 177 GDGRQNRFFRDHFGLHRLLLASVELTFRHPEDTSPMTLTCPPARELLDLFGQLGWNAAI 235 >UniRef50_Q6MMV3 Pseudouridine synthase n=2 Tax=Bdellovibrio bacteriovorus RepID=Q6MMV3_BDEBA Length = 290 Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 138/235 (58%), Gaps = 18/235 (7%) Query: 1 MLEILYQDEWLVAVNKPSGWLVH-----RSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDR 55 ++E+LY+DE+ +AVNKPSG+ VH + + RD+ + + R + QHV+ HRLD Sbjct: 50 LVELLYKDEYFIAVNKPSGFHVHPHENVQHRVSRDK--ICLYHARRMMKQHVYPVHRLDA 107 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSGVLL LSSE+ L + F + K Y A+VRG++ EE + PL ELD D Sbjct: 108 GTSGVLLFALSSESASKLCRLFTERATHKTYQAVVRGFVKEEGEVQLPL--ELDSTGDLV 165 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGR-YPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A T ++ LATVE PVA G+ +PT RY VE+ P TGR HQ+RRH + HP Sbjct: 166 D--------AHTSFKRLATVEFPVAVGKKFPTARYSWVEVTPHTGRYHQIRRHFNRISHP 217 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 ++GD+ HGD NR H ++ L L A +L THP++GE ++I A D W + Sbjct: 218 LLGDAVHGDSHHNRFFRNHLEIEGLCLKALRLEFTHPWSGEKVSIEAPPCDKWKK 272 >UniRef50_B0RLZ1 Pseudouridine synthase n=13 Tax=Xanthomonadaceae RepID=B0RLZ1_XANCB Length = 258 Score = 176 bits (445), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 139/241 (57%), Gaps = 21/241 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L+ILYQD L V+KP+G +VH S L R E + +R Q+G+ +F HRLDR TSG L Sbjct: 20 LQILYQDAVLAVVDKPAGLMVHDSKLARGEDDFLADRLRVQLGRPIFLVHRLDRATSGCL 79 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFAREDK 120 L+ + L + +++K Y AI RGW EE ++D+ L D Sbjct: 80 LLAFDRDTASALGKALMAGEVEKDYLAICRGWPAEERFIVDHDL--------------DG 125 Query: 121 GP-----QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 GP +PAVTH++ LAT E+ + + + T+RY L+ +P+TGR Q+RRHL HL H + Sbjct: 126 GPGKPIKKPAVTHFQRLATGELEIPSTGFATSRYALLRCQPQTGRFRQIRRHLKHLSHHM 185 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 IGD+ HGD R NRS G+ R++LHA +L HP G +++ A LD + +A + FG Sbjct: 186 IGDTSHGDGRHNRS-FRMLGIHRMLLHAERLGFPHPADGRRISVVAPLDVEFAKACALFG 244 Query: 236 W 236 W Sbjct: 245 W 245 >UniRef50_A2U235 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A2U235_9FLAO Length = 234 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 14/242 (5%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDR---DEKVVVMQTVRDQIGQHVFTAHRLDRPTS 58 LEI+Y+D +L+ V KP+ LVH ++ R DEK + +Q V ++ G V+ HRLDR TS Sbjct: 3 LEIIYEDAYLLCVTKPNNVLVHHAYHSRNMADEKSL-LQLVSEETGLKVYPIHRLDRKTS 61 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G +L+ E F ++QIQK Y+ +VRG+ +D P+ R+ Sbjct: 62 GAILLAKEKEYVAKFQDLFTKNQIQKIYYGVVRGFSPSTKRIDSPVK----------GRD 111 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + A+T + LA + + +A Y ++RY L+EL PKTGR HQLR H + HP+IGD Sbjct: 112 ANVHKEALTELKTLAKITLDIAVKPYDSSRYSLIELFPKTGRMHQLRVHSNKISHPLIGD 171 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 +K+GD + ++FG + L LHA +L HP+T E L + + W+Q +F W+ Sbjct: 172 AKYGDKNHDMMFEQNFGFKNLFLHAGKLEFIHPYTQETLILKSTFPTDWIQLFEKFNWKN 231 Query: 239 LL 240 L Sbjct: 232 PL 233 >UniRef50_A9GEI0 Pseudouridine synthase n=2 Tax=Myxococcales RepID=A9GEI0_SORC5 Length = 241 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 128/235 (54%), Gaps = 25/235 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L +L+ D+ + A KPSG LVHR W D VV + +G+ V+ HRLDR TSGVL Sbjct: 8 LSLLHLDDRVAAFAKPSGLLVHRGW--GDAPVVFVDLAERALGRKVYPVHRLDRATSGVL 65 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L+ L A LL QFEQ +KRY A+VRG E +D+P+ R + G Sbjct: 66 LVALDPAAAALLCAQFEQGLARKRYLALVRGVPPEHGCVDHPI-----------PRREGG 114 Query: 122 PQ-PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 P+ PAVT + L +E RY +VE P+TGR HQ+RRHL H+ HPIIGD Sbjct: 115 PRVPAVTDFERLHALE-----------RYAVVEARPRTGRLHQVRRHLKHISHPIIGDVN 163 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +G NR E + L RL LHA++L++ HP TG PL + A L D Q G Sbjct: 164 YGKGEHNRLFRERYALHRLALHAAELAVAHPETGAPLRVAAPLPDDLRGPFDQLG 218 >UniRef50_B7RZ07 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RZ07_9GAMM Length = 143 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/143 (46%), Positives = 93/143 (65%) Query: 99 VLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKT 158 ++D+ L ++ DKIAD+ + + + AVT + L TVE+P A RYP +RY LV L+P+ Sbjct: 1 MIDHALQDQPDKIADRNRTQARPTRDAVTRFERLDTVEIPYAVDRYPQSRYSLVALQPEQ 60 Query: 159 GRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLT 218 GRKHQLRRH+ HL +PIIGD+KHG NR AE +G RL+L + + +HP G+ + Sbjct: 61 GRKHQLRRHMKHLGYPIIGDAKHGKGVHNRFFAEKYGCGRLLLACTGMDFSHPVNGDTVH 120 Query: 219 IHAGLDDTWMQALSQFGWRGLLP 241 I AGLD + + LS FGW+ P Sbjct: 121 IRAGLDAAFQRVLSAFGWKEPSP 143 >UniRef50_A9B3Z2 Pseudouridine synthase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B3Z2_HERA2 Length = 560 Score = 133 bits (334), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 115/222 (51%), Gaps = 21/222 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAH-RLDRPTSGV 60 +EILY+DE ++ +NKP+G H D V + +R Q+ H RLDR TSGV Sbjct: 3 IEILYRDEQILVINKPTGVATHAPQGDL-ALTDVERALRAQLQLEYLAIHQRLDRDTSGV 61 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELDKIADKFARED 119 +L L A LA F +H I+K Y A+V G + + V+D L D + + D Sbjct: 62 MLFALDPAANANLATAFAEHTIEKTYQALVYGVPIQTQGVIDAALAPAGDGMIQVASAHD 121 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 + Q A+THYR L + P R+ L+EL+PKTGR HQLR H L HPI+GD Sbjct: 122 RRAQSAITHYRVLVS---------SPDQRFSLLELQPKTGRTHQLRVHCECLGHPIVGDP 172 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 + R RLMLHAS+L THP T +PL I A Sbjct: 173 LYDVAR---------AAPRLMLHASELRFTHPLTQQPLHIQA 205 >UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C n=59 Tax=Proteobacteria RepID=RLUC_VIBCH Length = 315 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 17/232 (7%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+Y+D+ L+ +NKPSG VH + ++ +R Q + + HR+DR TSG+LL+ Sbjct: 97 IVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQ-ARFLELVHRIDRDTSGILLV 155 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 A R L QF + +QK Y+A+V G W E V++ PL L + R + Sbjct: 156 AKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPL---LKNEVNSIVRVNPNG 212 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 +P+ T +R L LV+ P TGR HQ+R H ++ HPI D ++G Sbjct: 213 KPSETRFRILEKF-----------AEATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYG 261 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D R + A+ FG++RL LHA+ + HP + + L IHA L+ QAL++ Sbjct: 262 DRRFDAYTAQ-FGIERLFLHAANIQFVHPASEKKLEIHAPLEAHLEQALTKM 312 >UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organisms RepID=Q3JQ55_BURP1 Length = 477 Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 123/240 (51%), Gaps = 19/240 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 EIL++D+ ++ +NKP+G VH + M+ R + + AHRLDR TSG+L Sbjct: 243 FEILFEDDAIIVLNKPAGVAVHGGSGVAFGVIEQMRHARPH-AKFLELAHRLDRETSGIL 301 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLME---EAVLDYPLVEELDKIADKFAR 117 ++ A L +Q ++++ KRY A V G W + V+ PL K+A Sbjct: 302 MLAKKRSALVGLHEQIRENRMDKRYFACVHGDWAADWGRRRVVKAPLF--------KYAT 353 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D G + GL + + R+P Y LVE E KTGR HQ+R HLAHL PI+G Sbjct: 354 PD-GERRVRVQEDGLPSHTVFNLVDRWPD--YALVEAELKTGRTHQIRVHLAHLGLPIVG 410 Query: 178 DSKHGDLRQNRSGAEHFG---LQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D+K+GD N++ A ++R+ LHA +L L HP TGEPL A L Q + Q Sbjct: 411 DAKYGDFALNKALARANAVPSIKRMFLHAHRLRLAHPLTGEPLQFDAPLPAECRQFIDQL 470 >UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J2_MAGSM Length = 328 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 125/233 (53%), Gaps = 21/233 (9%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG--QHVFTAHRLDRPTSGVLL 62 L++D W++ +NKP+G VH + V ++ +++G HRLD+ TSG+LL Sbjct: 101 LHRDGWILVLNKPAGIPVHGGSGHQWGVVDAVRASLEKLGIEAQAELCHRLDKETSGLLL 160 Query: 63 MGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELDKIADKFAREDKG 121 GL A RLL + ++Q+ K Y +V+G + V++ PL + + ++ ++G Sbjct: 161 FGLRPRAVRLLTEAMRENQVTKTYLTLVQGVPAARQGVINQPLSKGNVRGGERMVVVEQG 220 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYG---LVELEPKTGRKHQLRRHLAHLRHPIIGD 178 Q AVTHYR L + YG L+E++ +TGR HQ+R H+ L HP+ GD Sbjct: 221 GQRAVTHYRVLRS--------------YGVASLLEVQLETGRTHQIRVHMQWLGHPVAGD 266 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 K+GD N+ E GL+RL LHAS+L+ HP + L A LDD + L Sbjct: 267 GKYGDKAFNKWMRER-GLKRLFLHASELAFRHPENEQKLAYQAPLDDELTRVL 318 >UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q5QZ45_IDILO Length = 315 Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 116/232 (50%), Gaps = 14/232 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D+ L+ +NKPSG VH + + ++ +R + + + HR+DR TSG+LL+ Sbjct: 94 ILYEDDALMLINKPSGVAVHGGSGLQFGLIEGLRALRPK-EKSLELVHRIDRDTSGLLLV 152 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 R L +Q ++ K+Y A+VRG W ++ PL + K ++ R D Sbjct: 153 AKKRSVLRSLHEQLRNKEMNKQYLALVRGQWQKRVRSVEAPLKKNTLKSGERIVRVDAEG 212 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + ++T +R RY LVE P TGR HQ+R H H HPI D K+G Sbjct: 213 KASLTRFR---------IQQRYKEG--TLVEASPVTGRTHQIRVHALHAGHPIAKDPKYG 261 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D + + + GL RL LHA QL HP TG+ + A LDD Q L Q Sbjct: 262 DTDFDNTMS-RLGLNRLFLHAWQLRFLHPVTGKEVAFEAPLDDNLQQTLKQL 312 >UniRef50_C9M5C8 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5C8_9BACT Length = 276 Score = 113 bits (282), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 110/213 (51%), Gaps = 21/213 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTA---HRLDRPTS 58 L++LY+ + ++ +NKP+G L S D + V F A HRLDR TS Sbjct: 49 LDVLYRSDSVLVINKPAGLL---SQPDTKGEDSVATRALGYASDPAFGAQLVHRLDRNTS 105 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 GV+++ L +A R L F++ K Y A+V G L +D PL+++ DK K R Sbjct: 106 GVMILALDGQALRSLMVCFKERTANKTYLALVSGQLPPSGQIDAPLLKDPDK---KLVRV 162 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + AVT +R LAT ++ L E+E TGR HQ+R H+ H+ HPI+GD Sbjct: 163 ASNGERAVTRFRRLAT-----------DGQFSLAEVEILTGRTHQIRVHMNHIGHPILGD 211 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHP 211 +K+GD + G++R MLHA+ L + P Sbjct: 212 AKYGDF-SAKPQVRRLGIRRPMLHATCLVVNSP 243 >UniRef50_A1AVB5 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AVB5_RUTMC Length = 303 Score = 112 bits (281), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 118/221 (53%), Gaps = 19/221 (8%) Query: 5 LYQDEWLVAVNKPSGWLVHR-SWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 LY+D+ L+ +NKPSG VH S +D V +++ +R + + HRLDR TSGVLL+ Sbjct: 89 LYEDKGLLIINKPSGLSVHSGSGVD----VGIIEALRQIYKKPIELVHRLDRATSGVLLI 144 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 + L +Q QH ++KRY A+V+G W + +D PL + ++ D Sbjct: 145 AKKRSVLKNLHEQLSQHTVEKRYTALVKGVWSKKCHTIDAPLYQN-----SRYIMVDAKG 199 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + A++H++ L + G + + LVE+ +TGR HQ+R H + H + D K+G Sbjct: 200 KYAISHFQPLKN----FSDGGFSAS---LVEISIETGRTHQIRVHAKYAGHALACDDKYG 252 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 D +R + GL+RL LHA Q T+P T + ++A L Sbjct: 253 DKEFDRQ-VKFKGLKRLFLHAHQFIFTNPLTNDIQKVNASL 292 >UniRef50_B0VCN8 Pseudouridine synthase n=16 Tax=Acinetobacter RepID=B0VCN8_ACIBY Length = 212 Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 26/222 (11%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ++Y+D+ + ++KPS L D + V+ I HRLDR TSG+L+ Sbjct: 9 LIYRDDDFMVIHKPSDILSVPGKGDLHDSVLTRLVA---IEPRTLLIHRLDRDTSGILVF 65 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDK----IADKFARED 119 GLS +A+QF+ Q K Y A+V G L E +D P+V + + I D A + Sbjct: 66 GLSKRGQSAIARQFQDRQTSKIYEALVAGHLEGEGTVDIPVVYDPSRPPLHIVD--ASHN 123 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 K PA+TH++ + ++ G+ P TR V+L P TGR HQLR H+ +L HPI+GD+ Sbjct: 124 K---PALTHWQAIEHFQI---QGQ-PVTR---VKLTPITGRSHQLRVHMQYLGHPIVGDT 173 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 + + E + RL LHA QLS HP TGE LT + Sbjct: 174 LY-------AAPEQLLVPRLCLHAKQLSFNHPVTGESLTFNC 208 >UniRef50_A9GIV4 Pseudouridine synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GIV4_SORC5 Length = 350 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/240 (37%), Positives = 126/240 (52%), Gaps = 24/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 + +L++D+ L+A++KP+G VH + V+ M + G+ +F AHRLDR TSGVL Sbjct: 108 IPVLHEDDALLAIDKPAGLPVHPTARYHKSTVIKMMEA-ARPGERLFLAHRLDRETSGVL 166 Query: 62 LMGLSSEAGRLLAQQFEQHQ-IQKRYHAIVRGWLMEEAV-LDYPLVEELDKIADKFARED 119 L+ + EA R + QFE+ + KRY AI GW + ++ PL ELD A ++ + Sbjct: 167 LLCRTPEADRTVKAQFEERTGVVKRYAAIAWGWPERDTFRVELPL--ELDD-ASRYKVKM 223 Query: 120 KGPQPAVTHYRGLATVEMPVATGRY--PTT--RYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + P RGLA+ GR P T RY LV +TGR+HQ+R HLA P+ Sbjct: 224 RVAPPG----RGLASATACEVLGRRADPLTGRRYALVRCTLETGRQHQIRVHLAASGLPL 279 Query: 176 IGDSKHG-DLRQNRSGAE---------HFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDD 225 +GD +G D GA+ L R LHA+ L LTHP TGE + I A L D Sbjct: 280 VGDKLYGPDEGMFARGADGVLTDDDRRALELDRHALHAALLELTHPMTGERVRIEAPLSD 339 >UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae RepID=A7H6D3_ANADF Length = 339 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 131/261 (50%), Gaps = 37/261 (14%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV---------FTAHRLD 54 +L++D ++AV+KP+G H +V M R +G AHRLD Sbjct: 87 VLHEDADVLAVDKPAGLAAHPGTGISGATLVEM--ARAHLGTPADLPPTEFKPSPAHRLD 144 Query: 55 RPTSGVLLMGLSSEAGRLLAQQF-EQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIA 112 R TSGV+L+ + + L + F + ++K Y A+V+G + EA +D PL E Sbjct: 145 RDTSGVVLVAKNRKTMVRLTELFTDGADVKKTYLALVKGKMPREAGTIDLPLAEHEQTAR 204 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 K AR Q A+T ++ ++ ++ L+ + +TGR HQ+RRHL + Sbjct: 205 SKAAR-GVNLQEALTRWKVVSAMK-----------EASLLAVTIETGRTHQIRRHLEAVG 252 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 HP++GD ++GD NR+ + +GL+R+ LHA +L L HP TG PL + A L ++ALS Sbjct: 253 HPVLGDRRYGDFPTNRAARQRWGLRRMFLHAWRLELPHPTTGAPLRLEAPLPGELLEALS 312 Query: 233 QFGWRGLLPENERVEFSAPSG 253 R S+P+G Sbjct: 313 ------------RANLSSPAG 321 >UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C n=110 Tax=Gammaproteobacteria RepID=RLUC_SALTY Length = 319 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 14/230 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D+ ++ +NKPSG VH + ++ +R + + + HRLDR TSGVLL+ Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPE-ARFLELVHRLDRDTSGVLLV 153 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 A R L +Q + +QK Y A+VRG W + PL++ + + ++ R + Sbjct: 154 AKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRVSQEG 213 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 +P+ T ++ RY LV P TGR HQ+R H + HPI D ++G Sbjct: 214 KPSETRFK---------VEERYAFA--TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG 262 Query: 183 DLRQNRSGAEH-FGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 D ++ E GL+RL LHA+ L THP TGE + I A +D+ + L Sbjct: 263 DREFDQQLTEAGTGLKRLFLHAAALKFTHPGTGEVMRIEAPMDNALKRCL 312 >UniRef50_C7LVL1 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=C7LVL1_DESBD Length = 234 Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 121/226 (53%), Gaps = 28/226 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQHVFTAHRLDRPTSG 59 L ++++D +V VNKPSG L S R ++ V+ VR +I + HRLD TSG Sbjct: 16 LAVIHEDRDMVVVNKPSGLL---SVPGRTPELFDSVLSRVR-EIHRGAQAVHRLDLGTSG 71 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFARE 118 VL++ +A +L QQF+ +K Y A V+G + E++ +D PL+ + + Sbjct: 72 VLVVATRRKAETILRQQFQDRLTRKLYLARVQGVMSEDSGQVDLPLICDWPNRPMQMVCH 131 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D G +PA+T Y+ L + LV L P TGR HQLR H+A L HPI+GD Sbjct: 132 DTG-KPALTDYQVLES-----------DGESTLVLLRPHTGRSHQLRVHMASLGHPILGD 179 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 + +G+ R +RL+LHASQL L HP++GE T HA D Sbjct: 180 NLYGEQRPG---------ERLLLHASQLGLYHPYSGEWTTFHAPCD 216 >UniRef50_B6G997 Pseudouridine synthase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G997_9ACTN Length = 227 Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 119/244 (48%), Gaps = 35/244 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTA----------- 50 L +LY+D WL+AV+KP+G +VH T+ D + H+ + Sbjct: 7 LRVLYRDPWLMAVDKPAGIIVHGDGTG-------APTLTDAVRAHLVASGEASASAAAQA 59 Query: 51 -HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELD 109 RLDR T+G++L L EA + + IQKRY AIV G + PL D Sbjct: 60 LQRLDRDTTGIVLFSLDKEAQPAFDRMIAERSIQKRYLAIVHGRFPAAKTMCQPLGR--D 117 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 + + R + +PA T + +A + A R P L+ ++ TGRKHQ+R HLA Sbjct: 118 RHDSRRMRVSRTGKPAHTDAKRIAYAK---ADARAP--ERSLLAIDLHTGRKHQIRVHLA 172 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 H + P++GDS +G + SG LMLHAS+LS THP TG P I A + + Sbjct: 173 HAKFPLLGDSLYGG--PSCSGG-------LMLHASELSFTHPITGAPTHIQAPYPARFQR 223 Query: 230 ALSQ 233 +SQ Sbjct: 224 IMSQ 227 >UniRef50_A7HL94 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HL94_FERNB Length = 317 Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 31/227 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVH-RSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 L+I+Y+DE ++A+NKP+G VH +++ + + + G F HRLD+ TSGV Sbjct: 99 LDIIYEDELIIAINKPAGVSVHPGKNVNKPSIIEGLIHYGKENGFEPFLVHRLDKETSGV 158 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L++ R L++ ++K Y+A+V G +++ ++ P+ Sbjct: 159 LIVAKDRSVARELSEIISSRNVEKIYNALVFGK-VQKVTINTPI---------------- 201 Query: 121 GPQPAVTHYRGLATVEMPVATGRYP----TTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 Q AV+H +P+ R + +E+E +TGRKHQ+R+HL+ + PI+ Sbjct: 202 DGQDAVSHI-------IPIEYFRVKLNGISVELSFLEVEIETGRKHQIRKHLSSINCPIV 254 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 GD +G+ R NR +++FGL+R LH Q+ F G I A L Sbjct: 255 GDKDYGNFRLNREFSKNFGLKRHFLHCKQMKFV--FNGRNYNILAQL 299 >UniRef50_B5YAZ5 Pseudouridine synthase n=2 Tax=Dictyoglomus RepID=B5YAZ5_DICT6 Length = 226 Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 127/239 (53%), Gaps = 32/239 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTA--HRL 53 LE++Y+D L+ VNKP+G LV D + +++ + I + +VF A HRL Sbjct: 7 LEVIYEDNHLLVVNKPAGILVQG---DITKSTTLLEISKAYIKEKYKKPGNVFLAIVHRL 63 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIA 112 D+P SGV++ +S++ L++ F + +++K Y A+ +G + +++ + L+ + Sbjct: 64 DKPVSGVVIFARNSKSAGRLSEAFRERKVEKEYIALCKGIFKVKKGTISESLLWVEKERK 123 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + +++DK + A+THY L + LV L P+TGRKHQLR HL+++ Sbjct: 124 ARVSQDDKS-KNAITHYEVLEEFK-----------NLSLVRLIPETGRKHQLRAHLSYIG 171 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 HPI+GD K+G G F R+ LH ++++ HP + + A + D W + L Sbjct: 172 HPILGDEKYG-------GGRIFK-DRIFLHCKKMAVPHPVRKDIMEFEAKIPDFWSEFL 222 >UniRef50_B1H073 Ribosomal large subunit pseudouridine synthase C n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H073_UNCTG Length = 238 Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 30/246 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +EI+YQDE ++ VNKPSG V + K +V + +R+Q+ Q ++ H +DR SGVL Sbjct: 5 IEIIYQDENILVVNKPSGMFVIPGRNIYENKTLV-EILRNQLKQKLWVVHIIDRDASGVL 63 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDK 120 + + E R ++ QFE +I+K+Y A++ G L E E ++ PL+ I+ K R D Sbjct: 64 VFAKNPETHRNISVQFENSKIRKKYIALLSGVLEENEGTINKPLI-----ISGKNVRIDI 118 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 + ++T ++ L Y LV P T ++HQ+R H L HP+ D + Sbjct: 119 TGKESITDFKVLENFR-----------SYTLVNALPLTVKRHQIRIHFWSLGHPLAIDGE 167 Query: 181 HGDL------------RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 +G L + + E+ + RL LHA+ L+L P +GE T A L + Sbjct: 168 YGTLDPIFLSSFKRGYKIKKGKTENPLISRLTLHAAALTLILPGSGEEKTFEAALAKDFE 227 Query: 229 QALSQF 234 A+ Q Sbjct: 228 VAVKQL 233 >UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C n=5 Tax=Buchnera aphidicola RepID=RLUC_BUCBP Length = 315 Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 13/232 (5%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D + + +NKPSG VH + ++ +R +++ HRLDR TSGVL++ Sbjct: 95 ILYEDNYFLILNKPSGMSVHSGSGINYGMIENLRILRPY-NRYLDLVHRLDRDTSGVLII 153 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 R L +Q + +I+K+Y A+V G W + PL++ + + D Sbjct: 154 AKKRSILRNLHEQLREKKIKKKYVALVHGVWPDILKSISKPLLKTSSRKNKNIVKIDPKG 213 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + ++TH+ +Y T+ L+ + P TGR HQ+R HL HL +PI+ D+K+G Sbjct: 214 KESITHFN---------IKKKY--TKNTLISITPITGRTHQIRVHLLHLNYPIVLDAKYG 262 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + + F + RL+LHA ++ HP + + I A LD + L Sbjct: 263 IKKLDYFIKNKFNINRLLLHAESINFFHPKRKKNILITAPLDYVFKTVLKNL 314 >UniRef50_Q1DCE5 Pseudouridine synthase, RluA family n=2 Tax=Cystobacterineae RepID=Q1DCE5_MYXXD Length = 310 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 115/228 (50%), Gaps = 17/228 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L +LY+D ++AV+KP+G + + +V + V ++G+ HRLDR TSGV Sbjct: 82 LRVLYEDADVIAVDKPAGVSAQPTEGRVGDSLVDL--VGAKLGRPAGLVHRLDRETSGVT 139 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 + G ++EA LA +F + + +KRY A L +D PL ++ + A Sbjct: 140 VFGKTAEATSALAAEFREGRARKRYVAATGPGLPPSGTVDLPLSKDPSRPGRWRATRAAN 199 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 PA+T + L++ + +VEL P TGR HQLR HL L PI+GD+++ Sbjct: 200 GVPALTDFHTLSS-----------GPAFCVVELLPHTGRTHQLRAHLTALGAPILGDARY 248 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 G + AE R +LHA L L HP TG+ L I A + + M+ Sbjct: 249 GGAAR----AEGVEAPRCLLHAQALELGHPRTGKLLRIEAPVPEDLMR 292 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 20/241 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ-----HVFTAHRLD 54 L+ILY+DE ++ +NKP G +VH + +V +M RD + HR+D Sbjct: 99 LDILYEDEDVILINKPKGMVVHPAAGHYTGTLVNALMYHCRDNLSGINGELRPGIVHRID 158 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADK 114 T+GV++ + + R++A+Q ++H I+++Y AIV G +E + K Sbjct: 159 MDTTGVIIACKNDVSHRIIAEQLKEHSIKRKYQAIVYGVFKDEEGRIEGSIGRSKTDRKK 218 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A G +PAVTHYR + P + +E E +TGR HQ+R H+ + HP Sbjct: 219 MAVIPDG-KPAVTHYRVIRNYTSPNG------NNFAHIECELETGRTHQIRVHMTSIGHP 271 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD +G + F L LHA L HP TGE + HA L + + + L++ Sbjct: 272 LLGDEIYG------AAKNPFKLDGQALHAEMLGFVHPRTGEYMEFHAPLPEYFSKLLTKL 325 Query: 235 G 235 Sbjct: 326 A 326 >UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G4_9PROT Length = 315 Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 13/232 (5%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-QHVFTAHRLDRPTSGV 60 + +LY+D+ L+ VNKP+G +VH + +++ ++ G + AHRLDR TSGV Sbjct: 94 IPVLYEDDSLLVVNKPAGMVVHGG---SGHEAGLIEALKQSRGLDDLRLAHRLDRDTSGV 150 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFARED 119 LLM +A R L + F + +QK Y A++ G A + L + + + ++ + Sbjct: 151 LLMAKHLDALRRLTESFRERDMQKTYFALIAGHPYAHAGRMSSNLAKGVVRGGERMVVDS 210 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 + + +VT Y+ + E +P Y +V L P +GR HQLR L H HPI+GD Sbjct: 211 EEGKASVTDYQVMIEYERH----GFP---YAMVALNPHSGRTHQLRVQLQHEGHPILGDG 263 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 K+G+ + + + G + LMLHA +L THP +G+ L A D W L Sbjct: 264 KYGE-KAQLAAYKSLGGKGLMLHAWRLRFTHPVSGKSLECKAPWPDNWSALL 314 >UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y726_9BACT Length = 315 Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 108/210 (51%), Gaps = 19/210 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT--AHRLDRPTSG 59 L+++Y D ++ VNKP+G L + E VV + + + HRLDR TSG Sbjct: 85 LDVIYSDRCVMVVNKPAGLLSQPDV--KGEDSVVTRALGYAVDPEFPPQLVHRLDRNTSG 142 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARED 119 V+ + L R L + F+ + KRY AIV G L E +D PL+++ DK K R D Sbjct: 143 VMALALDGPTTRALMECFKARRADKRYWAIVIGELPERGRIDVPLLKDADK---KLVRVD 199 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 + AVT Y+ L + + + L E+ TGR HQ+R H+ H+ HP++GD Sbjct: 200 PKGERAVTEYKRLTS-----------SGAFSLAEVHLLTGRTHQIRVHMNHVGHPLLGDV 248 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLT 209 K+GD ++ G++R MLHA L+L Sbjct: 249 KYGDF-GSKGQLRSLGVKRPMLHARSLTLN 277 >UniRef50_B7G0Q3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G0Q3_PHATR Length = 200 Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 99/208 (47%), Gaps = 11/208 (5%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 + YQD W V VNKP+G HRS +R + VV ++ Q+ + VF HRLD TSG LL Sbjct: 1 LCYQDRW-VCVNKPAGMSTHRSGGNRSNQFVVSTLLKRQLSRKVFPVHRLDHRTSGALLF 59 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 SE L + +K Y +VRG+ E DK D + Sbjct: 60 AFDSEMCASLHDALREQSARKTYVCLVRGFWDN-------FFESDTATVDKALTVDGTKR 112 Query: 124 PAVTHYRGLATVEMPVATG---RYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 A T + LA+ + + + L+ P TGR HQ+RRH + + P++GD++ Sbjct: 113 SATTVFTKLASTIILNNSAYGEKNVPISCSLILAVPTTGRTHQIRRHASAMGMPVLGDTQ 172 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSL 208 HG+ + NR + GL RL LH L+L Sbjct: 173 HGETKVNRWWRQKRGLDRLALHCLSLNL 200 >UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochmannia RepID=Q492Q1_BLOPB Length = 338 Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 121/251 (48%), Gaps = 33/251 (13%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+Y+D++L+A+NKP+G H + + ++ +R + Q + HRLDR TSGVLL+ Sbjct: 94 IIYEDDYLLALNKPTGVAAHGGSGLKFGVIEGLRALRPK-AQFLELVHRLDRETSGVLLV 152 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 A L +Q ++K Y A+V G W + ++ PL ++ Sbjct: 153 AKRRTALVYLHEQLRLQNMKKEYLALVHGRWNVNLQIVSVPLFKK--------------- 197 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVE----------LEPKTGRKHQLRRHLAHLR 172 T V + G++ TT + + E ++P TGR HQ+R H + Sbjct: 198 ---NTLLNSSRVVYIDSENGKFSTTHFQIKEYFDNVATFLAIKPITGRTHQIRVHTQYAS 254 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 HPI+GD+++GD + N + + FG RL LHAS L HP T + IHA L ++ L Sbjct: 255 HPIVGDNRYGDYQSN-TRFKRFGFNRLFLHASILRFIHPKTKKKFHIHAPLGQSFHNCL- 312 Query: 233 QFGWRGLLPEN 243 F R L +N Sbjct: 313 -FFLRNLSIKN 322 >UniRef50_C0N6T7 Pseudouridine synthase n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6T7_9GAMM Length = 318 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 125/233 (53%), Gaps = 14/233 (6%) Query: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLL 62 +I+++D+ ++ +NKPSG VH + + + ++ ++ + HRLDR TSG LL Sbjct: 96 DIIFEDDSMLVLNKPSGLAVHAGSQIQVGVIEAFRIIKPELA-FLELVHRLDRDTSGCLL 154 Query: 63 MGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDKG 121 + S ++ L QQ QI KRY +++G L E +++ PL++ ++ + Sbjct: 155 LAKSRDSLLNLQQQMLSDQIDKRYLTLLKGILPNAEELVEQPLLKNTVSSGERMVKVTPD 214 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + A T + + ++ +A L E++ TGR HQ+R H A +HP+ GD K+ Sbjct: 215 GKRAKTLF--IRQQDLSLAQ---------LTEVKLYTGRTHQIRVHAAWTQHPVAGDDKY 263 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD N++ + FGL+RL LHA +L + HP +GEP+ + A L Q +++ Sbjct: 264 GDREFNKT-LKSFGLKRLFLHAWRLGIRHPVSGEPMQLEAPLPTALQQVITKL 315 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 121/242 (50%), Gaps = 23/242 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG----QHVFTAHRLDR 55 L ILY+D +VAVNKP G +VH + +V ++ +D G Q HRLD+ Sbjct: 83 LAILYEDRDIVAVNKPPGMVVHPAPGHSSNTLVNALLAHCKDLSGIGGVQRPGIVHRLDK 142 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADK 114 TSGV+L + A L++Q Q +++K Y A+ G + E+ V+D PL Sbjct: 143 ETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLALAHGVIKEDTGVIDLPLARH------- 195 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 D+ T +G + + R+ Y V+++ KTGR HQ+R HLA L HP Sbjct: 196 --PSDRKRMHVSTPAKGREALSLWTVKERFLDATY--VKVQIKTGRTHQIRVHLAALHHP 251 Query: 175 IIGDSKHGDLRQ-NRSGAEHFGL----QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 +IGD+ +G ++ R A G +R MLHA +S THP TGE LT+ A L Q Sbjct: 252 VIGDTVYGGRKKRGRLPASVLGKAPPPERQMLHAHIVSFTHPVTGEKLTLTAPLPQDMAQ 311 Query: 230 AL 231 L Sbjct: 312 LL 313 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 134/247 (54%), Gaps = 31/247 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVH----RSWLDRDEKVVVMQTVR-----DQIGQHVF--TA 50 L+++Y+D+ L +NKP+G +VH + +R+ +V + ++G + Sbjct: 82 LDVVYEDDDLAVINKPAGMMVHVGAGATEEERNRGTLVNALLYRFRALSEVGGDMRPGIV 141 Query: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELD 109 HRLD+ TSG++++ + A R LA+QF ++ K+Y A+V GW + + ++ P+ ++ Sbjct: 142 HRLDKETSGLIVVAKNDVAHRKLAEQFSSRRVHKKYVALVHGWPKKLKGTINLPIARDMS 201 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 + + G + A++HY +E P ++ LVE++ +TGR HQ+R H+A Sbjct: 202 R-RTRMTTRGSGGRDALSHYEVKEKIESPYG-------KFALVEVKIETGRTHQIRVHMA 253 Query: 170 HLRHPIIGDSKH---GDLRQNRS----GAEHFGLQRLMLHASQLSLTHPFTGEPL----T 218 L HP++GD+ + G+LR ++ ++ L+R LHA+++ L P TG+ L Sbjct: 254 SLGHPVVGDTLYGAPGELRVTKALKGMPSKMASLERNFLHAAEIELQQPATGKALRFVTK 313 Query: 219 IHAGLDD 225 + A L+D Sbjct: 314 VPAALED 320 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 127/259 (49%), Gaps = 43/259 (16%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQH----VFTAHRLDR 55 LEI++QD + +NKP+G +VH + +V ++ ++D G + HR+D+ Sbjct: 112 LEIIFQDADIAVINKPAGLVVHPAEGHWSGTLVNALLYHIKDLSGINGELRPGIVHRIDK 171 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG+L++ + A L +Q + H++++ Y A+V G + E ++ Sbjct: 172 DTSGLLVVAKNDRAHIHLTEQVKDHRVRREYLAVVHGVIGAET----------GRVEAPI 221 Query: 116 AREDK---------GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRR 166 R+ K G + A+TH+R LA RYP + L+ +TGR HQ+R Sbjct: 222 GRDPKDRQRMAVIAGGKSAITHFRVLA---------RYPEQGFSLLHCRLETGRTHQIRV 272 Query: 167 HLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 HLAH+ HP+ GD K+G R A FGL LHA +L HP +GEP+ A + Sbjct: 273 HLAHIGHPVAGDPKYGP----RKAA--FGLTGQALHAWKLEFVHPRSGEPMRFQADPPEP 326 Query: 227 WMQALSQFGWRGLLPENER 245 ++Q L + P N+R Sbjct: 327 FVQVLQAL---QMTPTNQR 342 >UniRef50_B0N6U2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0N6U2_9FIRM Length = 328 Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 33/228 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT------------ 49 +LY+D+ ++ V KP+G LVH D +E + T+ +Q+ ++ + Sbjct: 90 FSVLYEDKHVLIVFKPAGLLVHE---DANESI---NTLTNQVLSYLASKNELDLSRENTF 143 Query: 50 ----AHRLDRPTSGVLLMGLSSEAGRLLAQQFEQ-HQIQKRYHAIVRGWLMEEAVLDYPL 104 HRLDR TSG+++ G + A + L + +Q H I+K+Y I RG L + L + Sbjct: 144 MPGPVHRLDRNTSGIVIFGKTLAALQNLNEMIKQRHCIEKKYLTICRGQLNHQRNLHGYM 203 Query: 105 VEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQL 164 ++ ++ K ++D Y G T+E V +Y Y LVE+ TGR HQ+ Sbjct: 204 IKLENQAQVKLVKKD---------YPGALTMETIVRPLKY-NCDYSLVEVTLITGRMHQI 253 Query: 165 RRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPF 212 R HL+ + HPIIGD K+GD N+ + FGL +LHA ++ F Sbjct: 254 RVHLSSIEHPIIGDRKYGDFELNKYIKKTFGLNNQLLHAYKIKFVKTF 301 >UniRef50_A0LXI9 Pseudouridine synthase n=1 Tax=Gramella forsetii KT0803 RepID=A0LXI9_GRAFK Length = 289 Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 39/233 (16%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV---VMQTVRDQIGQHVFTAHRLDRPTS 58 E+L++DE + V+KP G+ ++ E + + + + AHRLD PTS Sbjct: 80 FEVLFEDEHIAVVHKPPGFPTSGNYFKTIENALPHNLSSSSEIDTLPYPLPAHRLDNPTS 139 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+LL ++ + L + F Q QIQK Y+AIV G + E+ +D P+ +++ K Sbjct: 140 GILLCAKTNSSLIKLQEAFAQKQIQKTYYAIVSGEIKEKIEIDSPIDQKISK-------- 191 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 T+ +P+ + Y LVEL P TGR HQLR HL+ PIIGD Sbjct: 192 ---------------TILIPIEFYQIENKNYTLVELNPLTGRTHQLRIHLSENNTPIIGD 236 Query: 179 SKHG----DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 + +G +L +N+S + L A ++S HP + + +T L + Sbjct: 237 NLYGKEETNLLKNKS---------IYLFAGKISFDHPLSKKLMTFQLQLPKKF 280 >UniRef50_Q6MND5 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MND5_BDEBA Length = 228 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 113/199 (56%), Gaps = 12/199 (6%) Query: 10 WLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEA 69 WLV +NKPSG VH D + ++ + + Q + HRLD+ TSG+LL+GL +E Sbjct: 19 WLV-INKPSGVSVHND--PPDVRTLLKKQLTPGTYQDIHPVHRLDKETSGLLLVGLDAET 75 Query: 70 GRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHY 129 L+ QF++H+++K Y+A++RG E + E I+DK A K PQ + Sbjct: 76 AANLSGQFQEHKVEKTYYALLRG----ELPVSTDWQEWNTPISDK-AEGRKNPQGLLKDR 130 Query: 130 RGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRS 189 T+ + +Y + LVE+ TGR+HQ+R+H A +RH I+GD+++GD + N Sbjct: 131 VEARTLYKVLEANKY----FSLVEVRLITGRQHQIRKHTALIRHAIVGDTRYGDPKYNER 186 Query: 190 GAEHFGLQRLMLHASQLSL 208 A + +R+ LHA+++++ Sbjct: 187 MANIYQTKRMFLHAARMTV 205 >UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GP31_9BURK Length = 335 Score = 106 bits (264), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L IL++DE L+ VNKPSG VH + ++ +R + Q + HR+DR TSG+L Sbjct: 104 LPILFEDEHLLVVNKPSGMAVHGGSGSSFGLIECIRALRAETHQDLELVHRIDRETSGIL 163 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDK 120 ++ A R L +Q +K Y +V G W +D PL++ + D+ Sbjct: 164 IISKKRSALRKLQEQLRARSWKKYYKTLVLGHWPEALRQVDLPLLKTQSSEKEARVFVDE 223 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 A T ++ + + ++ + L++ + TGR HQ+R H + + PI GD + Sbjct: 224 SGDKACTKFKVIQCYKSSYSS-------FTLIQAQILTGRTHQIRVHTSANKFPIAGDDR 276 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD---DTWMQALSQFGWR 237 +G+ N+ A GL+R+ LHA++L L HP T E + + A L D ++++L R Sbjct: 277 YGNFEMNKQLARQ-GLKRMFLHAARLQLVHPATNETIVLEAPLAPELDGFLKSLQAVQSR 335 >UniRef50_C8PTH9 Ribosomal large subunit pseudouridine synthase C n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PTH9_9SPIO Length = 240 Score = 106 bits (264), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 38/217 (17%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 + I+Y+DE L VNKP G V V + + + Q+G +F HRLD+ TSG+L Sbjct: 13 IPIVYEDEALCIVNKPYGIPVQGG---AHISVCLTEILSKQLGSEIFPVHRLDKETSGLL 69 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW------------LMEEAVLDYPLVEELD 109 + S++A R FE ++K Y A+ G L+ E ++D P+VE Sbjct: 70 VTAKSADAARSCRALFESQAVEKEYLALCFGGFEPSAHKKPVKKLLPEGIIDTPVVE--- 126 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 + P+PA + Y+ LA+ T Y L + TGR HQ+R HLA Sbjct: 127 ---------NGSPKPASSAYKLLAS-----------TDAYSLFSVRLHTGRMHQIRIHLA 166 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQL 206 + +PIIGD KHG+ N+ + +++L L A +L Sbjct: 167 GIGYPIIGDDKHGNFALNKQLWKTARIKKLQLCAYRL 203 >UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C n=102 Tax=Gammaproteobacteria RepID=RLUC_YERPE Length = 320 Score = 106 bits (264), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 113/229 (49%), Gaps = 14/229 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 IL++D++L+ +NKPSG VH + ++ +R + + + HRLDR TSGVLL+ Sbjct: 95 ILFEDDYLLVLNKPSGTAVHGGSGLSFGVIEGLRALRPE-ARFLELVHRLDRDTSGVLLV 153 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 A R L +Q +QK Y A+VRG W + PL++ + + ++ + Sbjct: 154 AKKRSALRSLHEQLRLKSMQKDYLALVRGQWQSHCKAIQAPLLKNIMQSGERVVKVSSEG 213 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 +P+ T ++ E LV+ P TGR HQ+R H H HPI D ++G Sbjct: 214 KPSETRFKIEERFEHAT-----------LVKASPVTGRTHQIRVHALHAGHPIAFDDRYG 262 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 R+ + GL RL LHA+ L HP TGE + I A LD+ L Sbjct: 263 -YREFDQQLQGTGLHRLFLHAAALRFEHPNTGETMRIEAPLDNQLRHCL 310 >UniRef50_A3Y8C6 Pseudouridine synthase n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8C6_9GAMM Length = 322 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 17/232 (7%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+Y+D L+ VNKPSG VH V V++ +R + + + HRLDR TSG++++ Sbjct: 100 IVYEDAGLMVVNKPSGLAVHGGSGLNFGLVEVVRQLRSK-EKSIELVHRLDRDTSGLIMI 158 Query: 64 GLS-SEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKG 121 S +L A E+ +QK Y A+V G W + ++ PL++ K ++ + Sbjct: 159 SKKRSVLKQLHAALREKEGVQKTYQALVYGSWPKRKQQVNAPLLKNELKSGERIVKVHTE 218 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + ++T ++ L E Y LVE EP TGR HQ+R H H +PI+GD K+ Sbjct: 219 GKESLTRFKLLRQFEG-----------YSLVECEPVTGRTHQIRVHTLHAGYPIVGDDKY 267 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 QN+ A+ G +RL LHA++L + + + + +DD W A++Q Sbjct: 268 SPSEQNKE-AKGLGFKRLCLHAAKLDIM--LNDQRILVEVPIDDEWRNAMNQ 316 >UniRef50_A9E330 Pseudouridine synthase n=1 Tax=Kordia algicida OT-1 RepID=A9E330_9FLAO Length = 300 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 34/225 (15%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQ-TVRDQIGQHVFT--AHRLDRPT 57 ++ ++++D+ + +NKP+G+ + ++ E + + I F HRLD PT Sbjct: 79 VISVIFEDDEIAIINKPAGFPTNGNYFKTIENALPHNLKPSNSIDALPFPKPVHRLDNPT 138 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAR 117 SG+L++ + A L QQFEQ +I K Y AIV G +E + + E Sbjct: 139 SGILIIAKTKSAQISLYQQFEQQEISKTYQAIVIGKTDKEGEITSAVAE----------- 187 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + A+T+Y L TV LV+L PKTGR HQLR HLA + HPI+G Sbjct: 188 -----KEALTNYETLQTV------SSLQNGHLSLVKLFPKTGRTHQLRIHLASINHPIVG 236 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPL--TIH 220 D +G +N L L A+ + L HP T E L TIH Sbjct: 237 DQLYGKAEENYKKG-------LFLCATSIQLIHPKTKEKLVFTIH 274 >UniRef50_D0P480 Ribosomal large subunit pseudouridine synthase A, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0P480_PHYIN Length = 363 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 121/240 (50%), Gaps = 29/240 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L+IL++D+ ++ VNKP+ L D D + V + V ++ + HRLD+ TSG+L Sbjct: 117 LKILFRDDAVIVVNKPANIL-SVDGTDPDALMSVHRCVA-RVYPNARMVHRLDQETSGLL 174 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV--------LDYPLVEELDKIAD 113 ++ L+ A + L QF + K Y A V GW+M + + P+ + L K Sbjct: 175 VVALTKSAAQSLNAQFRDRSVDKTYVARVDGWMMNDLEEKSESPRRVQIPMEKHLTKSLI 234 Query: 114 KFAREDKGPQPA-----VTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHL 168 + D+ P+ T Y L+ E R T LVEL+P TG+ HQLR H+ Sbjct: 235 QHVVSDREVDPSSSLWSTTEYSVLSRDES--GDDRKST----LVELKPVTGKTHQLRLHM 288 Query: 169 AHLRHPIIGDSKHG-DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 HL HPI+GDS + D+ +R+ RL LHA++LS THP T E LT + T+ Sbjct: 289 QHLGHPILGDSLYSPDVVYHRAS-------RLCLHAAKLSFTHPVTNERLTFESPCPLTF 341 >UniRef50_B7FU02 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FU02_PHATR Length = 240 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 107/239 (44%), Gaps = 22/239 (9%) Query: 2 LEILYQDEWLVAVNKPSGWL-VHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 L ILY DE + VNKPSG L V + +V + + I HR+D TSGV Sbjct: 1 LHILYCDEHICVVNKPSGILSVPGPRRNPSIANLVYEILNPPIDIDQMVVHRIDMDTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L+ L+ A R L F +++K Y A++ G + ++ + E D F R Sbjct: 61 LVFALTELALRQLHDDFRSRRVKKTYEALLAGHFRKATQVEIDVALERDPYHPPFMRRYW 120 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQ + T+ R + + P A P +R V + P TGR HQLR H A L +PIIGD Sbjct: 121 EPQRSATYSRQFSQIYQPSAQAHLPVSR---VHMSPHTGRTHQLRVHAAALGYPIIGDDI 177 Query: 181 HGDLRQNRSGAEHFGLQRLM------------------LHASQLSLTHPFTGEPLTIHA 221 +G + G L +L+ LHA QL + HPF+G P+ Sbjct: 178 YGFEGEGDCGVNSTILDQLIPNRMSLHQQLQELQLPLCLHAKQLCIFHPFSGAPMIFEC 236 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 36/231 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVM-----QTVRDQIGQHVF---TAHRL 53 L+I+++D+ L+ VNKPSG +VH S +V ++ D + ++ HR+ Sbjct: 80 LDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDSTSEEIYRPGLVHRI 139 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPL----VEEL 108 D+ TSG+L++ +++ + LA+Q ++++ + Y AIV G + E V+D PL L Sbjct: 140 DKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGVVDAPLSRHQTNRL 199 Query: 109 DKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHL 168 ++ +KG + A+TH+ L + + Y LV +TGR HQ+R H+ Sbjct: 200 KRVV------EKGGKNAITHFEVLDSF-----------SDYSLVSCRLETGRTHQIRAHM 242 Query: 169 AHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTI 219 ++HPI+ D + +N A FG LHA LS THP TGE L Sbjct: 243 EFIKHPIVNDPLYHPKGKN---ATEFG---QFLHARTLSFTHPLTGETLNF 287 >UniRef50_D1W0M0 Pseudouridine synthase n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1W0M0_9BACT Length = 566 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 116/228 (50%), Gaps = 36/228 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV--FTAHRLDRPTSG 59 L ++Y+D+ L+ V+KP+G L S R ++ V +R Q+ V F+ HRLD TSG Sbjct: 351 LHVVYEDDALIVVDKPAGIL---SVPGRSQRPSVYSILRSQMPSSVELFSVHRLDMATSG 407 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFARE 118 +L++ +S R L +QF H IQK Y AI+ G L + E V+ PL + + Sbjct: 408 LLILAKNSVVYRHLQRQFRTHHIQKEYIAILEGALSQREGVVTLPLRPDPFDRPRQVVDW 467 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGL--VELEPKTGRKHQLRRHLAH---LRH 173 + G + AVT YR L R+G V L P+TGR HQLR H AH L Sbjct: 468 EHG-KKAVTSYRVL-------------NVRHGKTWVALFPETGRTHQLRMHCAHAEGLNC 513 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 PI+GD +G RL LHA+ ++ HP +G+ LT+HA Sbjct: 514 PILGDPLYGH-----------HANRLYLHATSITFEHPISGQLLTLHA 550 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 26/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQHVF----TAHRLDR 55 L ++Y+D ++ +NKP G +VH + D +V ++ D G + HR+D+ Sbjct: 80 LNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVNGLLWHCHDLSGINGVLRPGIVHRIDK 139 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG+++ + A + LA+Q + ++Y+A+V G + E +D P+ + +K K Sbjct: 140 DTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYALVHGVINHEYGTIDAPIGRD-EKDRQK 198 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A +K +PA+TH++ + + Y LV +TGR HQ+R H+ ++ P Sbjct: 199 MAVTEKNSRPAITHFKVVERFD-----------NYTLVSCRLETGRTHQIRVHMQYIGFP 247 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 I+GD K+ LR+ Q MLHA QLS THP TGE +T A L + L+Q Sbjct: 248 IVGDPKYS-LRKT------LPTQGQMLHAYQLSFTHPSTGERMTFEAPLPPEFEALLTQL 300 >UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. JS666 RepID=Q126H9_POLSJ Length = 378 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 118/239 (49%), Gaps = 11/239 (4%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 +L++D++L+A++KP+G VH + ++ R Q + HRLDR TSG+LL+ Sbjct: 128 VLFEDDFLLAIDKPAGVAVHGGSGVSFGVIEQLRMARPQ-ADFLELVHRLDRETSGILLI 186 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEEL--DKIADKFAREDK 120 A +LL +QF + + K Y A+V G W V+D L + L + R Sbjct: 187 AKRRMALKLLQEQFRERETDKVYLALVSGNWPANHRVIDKALHKYLLPGGAGEGERRVKV 246 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPT---TRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 P R + V++ A P T + L+E+ KTGR HQ+R HLA+ HPI G Sbjct: 247 VPNDHPDGMRSVTLVKVKSAFAALPAAPGTPFTLLEVTIKTGRTHQIRVHLANEGHPIAG 306 Query: 178 DSKHGDLRQNRSGAEHFG----LQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 D K+GD N+S + L+R+ LHA L HP T + + + L D Q LS Sbjct: 307 DDKYGDFELNKSLQKSVAGGAPLKRMFLHAWSLKFNHPKTRKTIHLETPLPDELQQFLS 365 >UniRef50_Q6FCX9 Pseudouridine synthase n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FCX9_ACIAD Length = 214 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 16/218 (7%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ++++D + ++KP+G L D ++++ V +I HRLDR TSG+L+ Sbjct: 9 LIHRDNDFMVIHKPAGILSVPGKGDALFDSLLVRLV--EIEPKTLLIHRLDRDTSGILVF 66 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 GL+ A +++QF++ Q K Y A+V G + E ++D P+V + + A + + Sbjct: 67 GLNKMAQSAISRQFQERQTDKIYQALVVGEVYGEGLIDVPVVYDAARPPLHIA-DPAHHK 125 Query: 124 PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD 183 PA T ++ L E+ G+ T + L P TGR HQLR H+ ++ HPI+GD+ + Sbjct: 126 PAQTEWQALEQFEL---NGKMVTR----MRLTPITGRSHQLRVHMQYIGHPIVGDTLYAS 178 Query: 184 LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 L A+ + RL LHA QLS HP TGE +T H Sbjct: 179 L------ADQQLVSRLCLHAEQLSFYHPKTGELVTFHC 210 >UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=Q1J0S8_DEIGD Length = 341 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 124/262 (47%), Gaps = 31/262 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQ----TVRDQIGQ------HVFTAH 51 L++LY+DE L+AVNKP G + H + +V T+ +Q G H Sbjct: 97 LDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRLTLPEQPGAVGPDGYRPGIVH 156 Query: 52 RLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDK 110 RLD+ TSGV+++ + EA LA F+ K Y AI G W + V V Sbjct: 157 RLDKDTSGVIVVAKTVEAHARLAAAFKDRSTHKTYLAIAAGMWKAQGPVSVNAPVGRHPT 216 Query: 111 IADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 + GP+ A T + LAT P GR LV +P TGR HQ+R HLAH Sbjct: 217 ARQRMTVGGVGPREAQTLFTPLAT--HPDGHGRT----LALVRAQPHTGRTHQIRVHLAH 270 Query: 171 LRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQA 230 L PI+GD+ +G R+ A + R LHA L+L HP TGE L +HA + D ++A Sbjct: 271 LGSPILGDAVYG-----RASAV---MPRHALHAQFLTLPHPVTGETLHLHAPVPDDLLRA 322 Query: 231 LSQFGWRGLLPENERVEFSAPS 252 G G +P E APS Sbjct: 323 WVALG--GAVP----AELEAPS 338 >UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C n=22 Tax=Gammaproteobacteria RepID=RLUC_HAEIN Length = 322 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 15/232 (6%) Query: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLL 62 +IL++D+ L+ +NKPSG VH + ++ +R + + + HRLDR TSG+LL Sbjct: 99 QILFEDDCLIILNKPSGIAVHGGSGLNFGVIEALRALRPE-ARFLELVHRLDRDTSGILL 157 Query: 63 MGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKG 121 + A R L +Q +QK Y A+VRG W V+ L++ ++ R + Sbjct: 158 IAKKRSALRNLHEQLRVKTVQKDYLALVRGQWQSHIKVIQASLLKNELSSGERIVRVSEQ 217 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 +P+ T + ++E RY LV+ P TGR HQ+R H + HPI D K+ Sbjct: 218 GKPSETRF----SIE-----ERYINA--TLVKASPVTGRTHQIRVHTQYAGHPIALDDKY 266 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 GD ++ E GL RL LHA + HP GE L +A LD M+A+ Q Sbjct: 267 GDKDFDKQMNE-LGLNRLFLHAFSIRFEHPKNGETLRFNASLDH-QMKAILQ 316 >UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBY1_GARVA Length = 321 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 38/235 (16%) Query: 2 LEILYQDEWLVAVNKPSGWLVH--RSW-----------LDRDEKVVVMQTVRDQIGQHVF 48 + I+Y D+ +V ++KP G H + W + D K + R I Sbjct: 92 IPIIYNDDDVVVIDKPVGVASHAAKGWSGPTVPECLEAVGIDIKTTLCDESRKGI----- 146 Query: 49 TAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEE 107 RLD TSG++L+ + A ++ QF +H ++K YHA+V+G L ++ A +D P+ Sbjct: 147 -VSRLDVGTSGLMLVCKTDFAYEVMKNQFAKHIVKKTYHALVQGDLAQDKATIDAPIGRA 205 Query: 108 LDKIAD-KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRR 166 K++D +F G +PAVTH+ L R+ ++ LV + +TGR HQ+R Sbjct: 206 --KVSDFRFTITSDG-KPAVTHWDVLE---------RF--SQATLVSVNLETGRTHQIRV 251 Query: 167 HLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 H + + HP++GDS +G N A+ GLQR LH+ +L+ THP TG+ +T+ + Sbjct: 252 HFSSIGHPLVGDSMYG---ANPVLAQKLGLQRQWLHSMELTFTHPRTGKSVTVKS 303 >UniRef50_Q73K15 RNA pseudouridylate synthase family protein n=1 Tax=Treponema denticola RepID=Q73K15_TREDE Length = 244 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 31/238 (13%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDE---KVVVMQTVRDQIGQHVFTAHRLDRPT 57 + EILY+D+ ++ VNK +G LV D + ++ + +D+ + ++ HRLD+ T Sbjct: 5 LYEILYEDKDILIVNKNAGLLVGADRWDSEAPRLDKILEELYKDKGERKIYPVHRLDKET 64 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAR 117 SG+++ L++EA + L F+ +I+K YHA+ G EE ++ E+L DK R Sbjct: 65 SGLIIYALNAEAHKTLNDDFQNRKIEKIYHAVSAGIPQEE---NFKAEEKLRIDGDKLHR 121 Query: 118 ---EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 ++K + ++T + L +R+ L+E P TGR HQ+R HL HL P Sbjct: 122 TVIDEKKGKESLTEFSLLKRF-----------SRFCLLEARPITGRTHQIRAHLKHLGLP 170 Query: 175 IIGDSKHGD--------LRQNRSG---AEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 I+ D+ +G+ L++N G E + RL LHA L HP + E + I A Sbjct: 171 ILCDNLYGNGEPVYISALKKNWRGDKYEERPIISRLALHAHSLKFFHPISKEKIEISA 228 >UniRef50_Q1PXB6 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXB6_9BACT Length = 274 Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 38/231 (16%) Query: 3 EILYQDEWLVAVNKPSGWLVH-RSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +IL+ D+ V V+KP G + + ++ ++RD + Q RD+I HRLD+ TSG L Sbjct: 75 DILFNDDCYVIVSKPPGIVTNGQNSIERDLRT---QFNRDRIQ----AVHRLDKDTSGAL 127 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFAREDK 120 + + A + + F++H IQK Y IV G + E A ++ P+ Sbjct: 128 IFAKNENAFEEMKKVFKKHDIQKIYRVIVTGKICEPAFTINSPV---------------- 171 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 G Q AVTH L + T Y +E+ +TGR+HQ+R HLA + HP+IG+++ Sbjct: 172 GGQTAVTHITLLK---------KGKNTSY--LEVATETGRRHQIRIHLASIGHPVIGETE 220 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + R+ H +R MLHA ++S HP+T + +++ A + ++Q L Sbjct: 221 YA--RKEIENILHREAKRQMLHAHRISFVHPYTKKEISVTAPISHDFIQCL 269 >UniRef50_C8PQT2 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQT2_9SPIO Length = 246 Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 119/237 (50%), Gaps = 29/237 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG---QHVFTAHRLDRP 56 ++Y D+ +VAVNK +G LV D + + ++Q QI ++ HR+D+ Sbjct: 6 FTLIYADDDMVAVNKAAGLLVAADRWDAEAPRLDLLIQKELPQIAPSCNKLYAVHRIDKD 65 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKF 115 TSG+LL L++EA R L F+ +I+K Y ++ G + EE +D PL + D + Sbjct: 66 TSGILLYALNAEAHRTLNTAFQNREIKKTYRLLIHGRVSEEQFTVDLPLRADGDALHRTV 125 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + +G + AVTH+ L T ++ L+E P TGR HQ+R HLA +PI Sbjct: 126 VDKRRGKE-AVTHFTVLETFR-----------QFSLLEACPVTGRTHQIRAHLAAAGYPI 173 Query: 176 IGDSKHG--------DLRQNRSG---AEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 + DS +G +L+Q G E + RL LHA +L HP +G+P A Sbjct: 174 VCDSLYGSGKPVLLSELKQRWRGDVYTEQPLIGRLALHAYRLEGVHPRSGQPFAFTA 230 >UniRef50_Q0AFD5 Pseudouridine synthase n=3 Tax=Nitrosomonas RepID=Q0AFD5_NITEC Length = 354 Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 114/237 (48%), Gaps = 27/237 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT--AHRLDRPTSG 59 + LYQD++L+ +NKP+G VH V++ +R Q F HRLDR TSG Sbjct: 116 FDTLYQDDYLLVINKPAGTAVHGG---SGISYGVIEQLRKQRPDWKFLELVHRLDRETSG 172 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELD-----KIAD 113 VLL+ + L +Q + ++K Y +VRG W + PL + L ++A Sbjct: 173 VLLLARKRQTLLELHKQIREGTVRKHYLTLVRGKWKNSLQNVRLPLYKYLTAEGERRVAI 232 Query: 114 KFAREDKGP-QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 R D Q A T + E + L++ E KTGR HQ+R HLAHL Sbjct: 233 ATGRNDHDKVQQAYTLFALQKNWEA-----------FSLLDAELKTGRTHQIRVHLAHLG 281 Query: 173 HPIIGDSKHGDLRQNRSGAEHFG----LQRLMLHASQLSLTHPFTGEPLTIHAGLDD 225 PI GD K+GD NR + G L+R+ LHAS THP TGE L + A L D Sbjct: 282 FPIAGDDKYGDFGLNRQLQKDDGSGLVLKRMFLHASVFVCTHPVTGELLRLEAPLPD 338 >UniRef50_D2R4N0 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4N0_9PLAN Length = 313 Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 25/227 (11%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-----GQHVFTAHRLDRPTS 58 I+Y+D L+ V KP+ L + ++++ +++ V + + G+ F HRLDR S Sbjct: 89 IVYEDRHLIVVEKPAALLTVPT--PKNDRGTLLERVANYVKIVSRGKGAFQVHRLDRGVS 146 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G+L+ G ++E ++L QF H+ ++ Y AIVRG L + E +++ L + D ++++ Sbjct: 147 GLLIFGKTTELAQMLRDQFAMHKPEREYVAIVRGKLDKPEGMIESFLATDRD--LNRYST 204 Query: 118 EDKG-PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 +D+ Q AVTHYR + E+ A+ +V++ +TGR++Q+R H A HP+I Sbjct: 205 DDESIGQHAVTHYRVIE--ELAGAS---------VVQVWLETGRRNQIRVHFAEAGHPLI 253 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 GD ++ R + + + R+ LHA L L+HP TGEPL + L Sbjct: 254 GDQRY---RADEAADTRWTHARIALHARLLGLSHPMTGEPLRFESPL 297 >UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales RepID=A6LDZ7_PARD8 Length = 549 Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 109/222 (49%), Gaps = 28/222 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L+ILY+D++L+ +NKP G L D D + + + + HRLD TSG+L Sbjct: 340 LDILYEDDYLLVINKPEGMLSVPGKGDADSVYQRLSILYPEATGPIIV-HRLDMATSGLL 398 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAREDK 120 L + EA + L QF+ IQKRY A++ G + +E + PL + + E+ Sbjct: 399 LAAKTKEAHQNLQAQFKNRTIQKRYIALLEGEVPQDEGEIRLPLCPDPLDRPRQIVSEEF 458 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH---LRHPIIG 177 G +PA+THYR L T+ L+ P+TGR HQLR H AH L PI+G Sbjct: 459 G-KPALTHYRVLER-----------TSGKTLIAFYPQTGRTHQLRVHAAHPLGLHCPILG 506 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTI 219 D +G +RL LHA L+ THP T E + I Sbjct: 507 DELYGR-----------KAERLYLHAEYLAFTHPITSERIEI 537 >UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7T3_9PLAN Length = 355 Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 115/235 (48%), Gaps = 23/235 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRS---WLDRDEKVVVM--QTVRDQIGQH-VFTAHRLDR 55 L+IL++DE L+AVNKP G +VH + W + Q + GQH HRLDR Sbjct: 115 LDILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSALAFHFQQLSTVGGQHRPGIVHRLDR 174 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 TSGV+++ + LA QF K Y AI G + V+ P+ Sbjct: 175 DTSGVIIVAKTDPVHFSLAAQFADRTTAKEYFAITAGVPDRDRDVVSQPIG------IHP 228 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 F RE +P + R T M R+ ++ VE PKTGR HQ+R HLAH+R P Sbjct: 229 FHREKMAIRPGHSTSRDAET--MFHVLERF--AQHAAVECLPKTGRTHQIRVHLAHVRTP 284 Query: 175 IIGDSKHG---DLRQN---RSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 ++ D +G ++ Q R G+ L R LHA +LS+ HP TGE LTI A L Sbjct: 285 VLCDKLYGGRAEITQGELVRDGSTEVVLNRQALHARKLSINHPKTGERLTIEAPL 339 >UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQQ9_9BACE Length = 300 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 111/226 (49%), Gaps = 24/226 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV--VVMQTVRDQ-IGQHVFTAHRLDRPTS 58 L+I+YQD+ ++ +NK G VH + + +M R Q I HRLDR TS Sbjct: 84 LDIVYQDQDVLVLNKAPGVAVHPGPGHYSDTIGNFLMDYYRKQGILADFHPVHRLDRGTS 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFAR 117 G+LL+ L A +L +Q ++ Y A+ G + V+D P+ + + R Sbjct: 144 GLLLVALHGHAQEVLKEQLHSPSFRRVYLAVCEGAPNPPSGVIDAPIGRLEGSVLARTVR 203 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q AVTHYR L TV LV LE +TGR HQ+R H+AHL HP+ G Sbjct: 204 PDG--QRAVTHYRTLRTVN-----------DRALVRLELETGRTHQIRVHMAHLGHPLTG 250 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 D +G Q+ + R LHA++LS THP TG+ + A L Sbjct: 251 DFLYGTEDQSL-------IPRPALHAAELSFTHPITGKTMAFTAPL 289 >UniRef50_C5S931 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=C5S931_CHRVI Length = 346 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 121/235 (51%), Gaps = 16/235 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHR-SWLDRDEKVVVMQTVRD-QIGQHVFTAHRLDRPTSGVL 61 I+++DE L+ ++KPSG VH S L +++++R + G+ + HRLDR TSG L Sbjct: 122 IIHEDERLLVIDKPSGLAVHGGSGLSYG----LIESLRQLRPGRELELVHRLDRDTSGCL 177 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFARED- 119 ++ A R L + + KRY A++ G L E ++D PL + + ++ R D Sbjct: 178 VVCKRRSALRELHALIREGGLDKRYLALILGELPRAELLVDAPLKKNVLSSGERLVRVDA 237 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 +G + A T +R L + G+ T LVE E TGR HQ+R H AHL P+ GD Sbjct: 238 QGGKEARTRFRRLKRFAI---DGQALT----LVEAELITGRTHQIRVHAAHLGTPLAGDD 290 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 K+GD N+ + +GL+RL LHAS LS PL + L D Q L Sbjct: 291 KYGDEAANQR-LKGYGLKRLFLHASALSFKLECMARPLRLECPLPDELQQVLDAL 344 >UniRef50_Q489H0 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q489H0_COLP3 Length = 567 Score = 102 bits (255), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 110/236 (46%), Gaps = 50/236 (21%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV--FTAHRLDRPTSG 59 LEI++QDE +V VNKP+G L S + K V ++ Q Q HRLD TSG Sbjct: 364 LEIVFQDEHVVVVNKPAGLL---SVPGKSIKDSVYTRIKTQFPQASGGLIVHRLDMATSG 420 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFARE 118 +L++ L+ A + L QQF +I KRY A + G L + + + PL + D D+ Sbjct: 421 LLMLALNERAHKHLQQQFMNKEINKRYVATIEGKLEKTSGEICLPLRGDFD---DR---- 473 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVE---------LEPKTGRKHQLRRHLA 169 P+ V H G+Y T + L+E L P TGR HQLR H A Sbjct: 474 ---PKQMVCHEH-----------GKYAETHWQLIEEVDNTSKLFLYPITGRTHQLRMHCA 519 Query: 170 H---LRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAG 222 H L PIIGDS +G RL LHA +LS THP T E LT Sbjct: 520 HPDGLNLPIIGDSLYG-----------HSADRLHLHAQRLSFTHPITKELLTFEVA 564 >UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B8DF66_LISMH Length = 289 Score = 102 bits (255), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 113/234 (48%), Gaps = 30/234 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVH-RSWLDRDEKVVVMQTVRDQIGQ--HVFTAHRLDRPTS 58 LEI+Y+D++L+ VNKP H + D +Q ++ GQ + HRLD+ TS Sbjct: 78 LEIIYEDDFLLVVNKPVDMKTHANDSYETDTCANAVQYYLEKTGQDANALAVHRLDQTTS 137 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAR 117 G++L + A L+ Q E I + Y A V G W + ++ P+ E+ +R Sbjct: 138 GLVLFAKNKLAIAGLSWQMENRAIHRTYLAAVDGTWGLVMQTINKPIGED----RHHGSR 193 Query: 118 EDKGP--QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 P QPAVTH + L LVE + +TGR HQ+R HL+ + HPI Sbjct: 194 RQISPYGQPAVTHVKVLENDN---------EKNTSLVECQIETGRTHQIRVHLSGIGHPI 244 Query: 176 IGDSKH-GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 IGD+ + G R N R+MLHA +L L HPF G+ + A D W+ Sbjct: 245 IGDTLYGGSPRAN----------RIMLHAEKLHLNHPFKGKEMNFSAPAGDDWV 288 >UniRef50_D2QJH0 Pseudouridine synthase, RluA family n=3 Tax=Bacteria RepID=D2QJH0_9SPHI Length = 308 Score = 102 bits (255), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 115/239 (48%), Gaps = 30/239 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEK---VVVMQTVRDQIGQHVFTAHRLDRPTS 58 L ILY+D++L+ +NK +G L + +RD ++ T ++ +F HRLDR TS Sbjct: 89 LTILYEDQFLIVINKQAGLLSMATNKERDRTAYGILSEYTKKENPKNKIFIIHRLDRETS 148 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 GV++ S + RL+ + + ++ Y A+V G + E + RE Sbjct: 149 GVMMFAKSEKVQRLMQESWNATTKERTYVALVEG-----------IPEPPQGTITSYLRE 197 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTR----YGLVELEPKTGRKHQLRRHLAHLRHP 174 K A+ Y ++ Y T+ Y L+ELE +TGRK+Q+R H+ + HP Sbjct: 198 SK----ALIVYSSQNPDTGQLSITNYTVTKTGNGYALLELELETGRKNQIRVHMQDIGHP 253 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 + GD K+ GAE + RL LHA L+ HP TG P+ A + +++ + + Sbjct: 254 VAGDEKY--------GAESDPIGRLGLHAEVLAFEHPITGVPMRFDAPIPKSFLAMVKE 304 >UniRef50_A3MZ33 Pseudouridine synthase n=9 Tax=Proteobacteria RepID=A3MZ33_ACTP2 Length = 237 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 119/229 (51%), Gaps = 31/229 (13%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV-VVMQTVRDQIGQHVFT--AHRLDRPT 57 L +Y+D ++ +NKPSG L +R E M V+ + G FT AHRLD T Sbjct: 28 FLTEVYRDNHILVINKPSGLLSVPG--NRPEYYDSAMTRVQQKYG---FTEPAHRLDMAT 82 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA----VLDYPLVEELDKIAD 113 SG+LL LS A + L +QF + +K Y A++ G L E+ +++PL+ + + Sbjct: 83 SGILLFALSKAAEKELKRQFRDREPKKHYIALLWGKLGEKVGDTGEMNFPLICDWENRPR 142 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + ++G + A+THY LA +P T R V+L P TGR HQLR H L H Sbjct: 143 QKICYERG-KKAITHYEVLA--HLPNNTTR--------VKLTPITGRSHQLRVHSLALGH 191 Query: 174 PIIGDSKHGD-LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 PI+GD + L ++ S RL LHA LS+THP TGE +T A Sbjct: 192 PILGDKFYASPLAKSLS-------PRLCLHAESLSITHPITGEAMTFTA 233 >UniRef50_Q6MEZ4 Pseudouridine synthase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MEZ4_PARUW Length = 243 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 22/233 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 ++ILY+D L + KPSG L + ++ E + + + VF HRLD+ TSGV+ Sbjct: 32 IQILYEDADLAIIYKPSGLLSVATAFEKGETTHALLKAHYK-PRKVFVVHRLDQDTSGVM 90 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDK 120 + + + L FE H I + Y AIV G L+ L E+ + E Sbjct: 91 VFAFNEKTCNGLKDLFEVHDISRSYTAIVEGQLLSPSGTWKSYLYEDSQYFVHETEDETY 150 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 G + A+THYR L T++ +Y LVEL +TGRK+Q+R H HP++GD K Sbjct: 151 G-RLAITHYRTLKTLK-----------KYSLVELTLETGRKNQIRVHCQSAGHPVVGDKK 198 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 + GA L+RL LHA L+ HP + + + I + + + + + + + Sbjct: 199 Y--------GAHTNPLKRLCLHAHLLAFKHPISRKIIRIESPIPEEFYRLIPK 243 >UniRef50_A6ESW1 Pseudouridine synthase n=1 Tax=unidentified eubacterium SCB49 RepID=A6ESW1_9BACT Length = 300 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 31/223 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLV---HRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTS 58 L++L++D L ++KP+G V + ++ ++ ++ + AHRLD PTS Sbjct: 87 LKVLFEDNHLAIIHKPAGVEVSGNKKYTIENALPSLLKKSNQKDALDRPLPAHRLDYPTS 146 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G LL+G +SE + L + FE+ +I K+Y A+ G + E +D P+ + Sbjct: 147 GCLLIGKTSETLQALHRMFEKREISKKYIAVTLGNQITEGKIDKPI-------------D 193 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 DK ++T ++ L T + + +Y LV L P TGR+HQLR+H+ L +PI G+ Sbjct: 194 DKA---SLTTFKTLQT----ITSKKY--NALNLVLLTPHTGRRHQLRKHMMQLGNPIFGE 244 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 +GD+ G+ L LHA LS HP + L I + Sbjct: 245 KTYGDINDQGKGSG------LFLHAIALSFKHPIDNKTLIIKS 281 >UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7V3_ACIC5 Length = 355 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 37/260 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHR------SWLDRDEKVVVMQTVRDQIGQ-----HVFTA 50 L+I+Y+D+ L+ VNKP+G +VH S +R V + ++++ + Sbjct: 104 LDIIYEDKDLIVVNKPAGMMVHAGSGATDSARNRGTLVNALLGRQEKLSKTGGDLRPGIV 163 Query: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELD 109 HRLD+ TSG++++ + A + LA+ F Q +I K Y A+V G + E+ ++ + ++ Sbjct: 164 HRLDKETSGLIIVARNDAAHQRLAEMFSQREIHKTYLALVHGHIAEDRGTINAAIARDVI 223 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYG---LVELEPKTGRKHQLRR 166 + R +G + A++HYR +E TR+G LV + +TGR HQ+R Sbjct: 224 RRTRMTTRRTEGARTAISHYRVQRRIE----------TRWGKFTLVSVRIETGRTHQIRV 273 Query: 167 HLAHLRHPIIGDSKHG------------DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTG 214 HL+ + HP++GD+ +G R+ E L R LHA++L HP + Sbjct: 274 HLSSIGHPVVGDTHYGAPTTIVLPVANRARRKQLPAPEGLSLPRNFLHAAELKFPHPRSE 333 Query: 215 EPLTIHAGLDDTWMQALSQF 234 +PL + A L + L Q Sbjct: 334 KPLHLEAPLPAELVAFLEQL 353 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 28/242 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV-MQTVRDQIGQHVF------TAHRLD 54 L I+Y+D+ ++ +NKP G +VH S + +V + D + H HR+D Sbjct: 76 LNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLHHTDTLSTHNDDPLRPGILHRID 135 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 + TSG++L+ ++EA ++LAQ + H I++ Y A+V G L + V+D P+ KI Sbjct: 136 KDTSGLILVAKTNEAHKILAQDLKSHDIKREYIALVEGVLDHNKGVIDAPIARH-PKIRT 194 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K A G +PA+TH+ + T + L+ + +TGR HQ+R HLA+++H Sbjct: 195 KMAVVATG-KPAITHFEVMRTFR-----------DHTLLHCKLETGRTHQIRVHLAYIKH 242 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P+ GD +G + + +LHA +L HP T + + + A L + L Sbjct: 243 PVTGDPLYGTKAKILKDGQ-------LLHAFRLEFVHPITKKVMMLEAPLPPEFESYLVT 295 Query: 234 FG 235 G Sbjct: 296 LG 297 >UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK65_RHOM4 Length = 235 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 121/232 (52%), Gaps = 25/232 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRD-EKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 L ILY+D+ L+AV+KP G + +RD + + + G+ ++ HRLD+ SGV Sbjct: 3 LPILYEDDDLLAVHKPEGLA---AIPERDPSRPSARRLLEAARGERLWVVHRLDKEASGV 59 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFARED 119 LL ++EA R + FEQ Q++K Y A+V G L + + P+ + + + Sbjct: 60 LLFARNAEAHRYMNTLFEQRQVRKVYRALVHGRLEPGQGQIRAPIRM---YGSGRMGVDP 116 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 + +P+ T YR L Y Y L+E P TGR+HQ+R H H+ HPI+GD Sbjct: 117 ERGKPSETRYRVLE----------YLDEAYSLIEALPLTGRRHQIRVHCYHIGHPIVGDP 166 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 ++GD RS + + RLMLHA + HP G+ L I A + +++ Q L Sbjct: 167 RYGD----RSVQQRY--PRLMLHALSIRFRHP-NGQELEIVAPVPESFQQVL 211 >UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepID=B7GLK3_ANOFW Length = 292 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 33/238 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDE-------KVVVMQTVRDQIGQHVFTAHRLD 54 L I+Y+D++++ +NKP H S + E ++ + Q+ V RLD Sbjct: 80 LAIVYEDDYVIVINKPP----HMSTIPSREHPHGTLANALLHHYEQQQLQTTVHVVTRLD 135 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 R TSG++L+ LL++Q +Q ++++RY A+ G++++ +D P+ + D I + Sbjct: 136 RDTSGLVLVAKHRHVHHLLSEQQKQGRVKRRYEAVCHGYVIQLVGTIDAPIGRKGDSIIE 195 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + R D Q AVTHY L V ++ +TGR HQ+R H +H+ H Sbjct: 196 REVRLDG--QRAVTHYEVLQQ-----------KNEMTHVSIQLETGRTHQIRVHFSHIGH 242 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 P++GD +G LR++ + R LH+ +L+ HPF + +T HA L D + L Sbjct: 243 PLVGDDLYGGLREH--------IDRQALHSCELTFFHPFFEKTMTFHAPLPDDIARLL 292 >UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=A5IZB6_MYCAP Length = 305 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 28/231 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ-----HVFTAHRLD 54 L+I Y+DE+L+ +NKPSG +VH + ++ +V +M ++ + + HR+D Sbjct: 76 LDIRYEDEYLLILNKPSGLVVHPAPGHLNDTLVNALMYHFKNNLSDANGLLRLGIVHRID 135 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADK 114 + TSG+L++ +E LA+ + HQI++ Y AI G L + KI Sbjct: 136 KDTSGLLIIAKDNETHNELAKMLKNHQIKRTYLAICEGILPNKTT----------KINLP 185 Query: 115 FAREDKGPQPAVTHYRGLATVE-MPVATGRYPTTR-YGLVELEPKTGRKHQLRRHLAHLR 172 R+ K + H G ++V + + Y + Y LV+ E +TGR HQ+R HLA+++ Sbjct: 186 IQRDTKNRKLMSIHKDGKSSVTYVHMLKSFYIDNKPYSLVKCELETGRTHQIRVHLAYIK 245 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 HP+ GDS +G + F QR LHA +LS HP + + +++ + Sbjct: 246 HPVYGDSIYG------KSVDEFN-QR--LHAYKLSFMHPVINKLIEVYSDI 287 >UniRef50_A9RVX3 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RVX3_PHYPA Length = 361 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 28/219 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHR----SWLDRDEKVVVMQTVRDQI--GQHVFTAHRLDR 55 +E LY+D++++ V+KP LVH S L++ + V Q+ GQ V HRLDR Sbjct: 66 IERLYEDQYIIGVSKPGTLLVHNNKASSPLEKQRNAFLKNMVEAQLTAGQKVSPVHRLDR 125 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 P SG ++ S+ A R K Y + RG + + D P+ +E Sbjct: 126 PASGAIIFSKSAVATRAAQASLSHPACIKEYVVLARGTTPDFFICDEPVNDE-------- 177 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 P+ AV+ + + P +R L+++ KTGR HQ+R+HL H H + Sbjct: 178 ---KGAPKSAVSQCEKILDL---------PESRCSLLKVVIKTGRWHQIRKHLNHRAHHV 225 Query: 176 IGDSKHGDLRQNRSGAEHFGL--QRLMLHASQLSLTHPF 212 +GD KHG + NR E+ + R+ LHA++L+ HP Sbjct: 226 VGDVKHGKGKTNRFFRENHKMLSGRIFLHAARLTFPHPL 264 >UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A n=205 Tax=Proteobacteria RepID=RLUA_ECOLI Length = 219 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 114/224 (50%), Gaps = 20/224 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L ILYQD+ ++ VNKPSG L L+ + V+ + RD + HRLD TSGV+ Sbjct: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVI 71 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAREDK 120 ++ L+ A R L +QF + + +K+Y A V G E ++D PL+ + + + Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET 131 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 G +PA T Y VE Y V L+P TGR HQLR H+ L HPI+GD Sbjct: 132 G-KPAQTEYE---VVE-------YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 + + R+ A RL+LHA L++THP G +T A D Sbjct: 181 YAS-PEARAMAP-----RLLLHAEMLTITHPAYGNSMTFKAPAD 218 >UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D n=8 Tax=Sphingomonadales RepID=RLUD_ZYMMO Length = 317 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 33/235 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-------------VMQTVRDQIGQHVF 48 LEI+++DE L+ VNKP+G +VH + + D +V + R I Sbjct: 82 LEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIGGVARPGI----- 136 Query: 49 TAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLV-EE 107 HR+D+ TSG+L++ + A LA QF H I +RY AIV G + +D PL Sbjct: 137 -VHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPSLQGHVDAPLARSS 195 Query: 108 LDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 +++ + +G + AVTHYR + P L+E +TGR HQ+R H Sbjct: 196 VNRQKMAIVSDGRGKR-AVTHYRMIT-----------PLKNASLIECRLETGRTHQVRVH 243 Query: 168 LAHLRHPIIGDSKHGDLRQ-NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 ++ + H ++GD +G ++ + + + QR LHA+ L HP +G+ + A Sbjct: 244 MSSIGHSLLGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDA 298 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 117/242 (48%), Gaps = 22/242 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTA---HRLDRPTS 58 L+ILY+DE + +NKP+G +VH + D +V RD V A HRLD+ TS Sbjct: 90 LDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKDTS 149 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 GV+++ + +A L +Q Q+ ++Y A+V L+ ++ +E + + Sbjct: 150 GVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAA-IERHPRDRLRMEVS 208 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D G + AVTHYR R + +E TGR HQ+R H+AHLRHPI+GD Sbjct: 209 DTGKE-AVTHYRL-----------RERFRAHTALECRLDTGRTHQIRVHMAHLRHPIVGD 256 Query: 179 SKH-GDLRQNRSGAEHF-----GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 + G L+ + G + G +R LHA L HP P+ I A + + Q L+ Sbjct: 257 RLYGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVPEDLCQLLA 316 Query: 233 QF 234 Sbjct: 317 AL 318 >UniRef50_A6NVX8 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVX8_9BACE Length = 299 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 117/230 (50%), Gaps = 24/230 (10%) Query: 4 ILYQDEWLVAVNKPSGWLV--HRSWLDRDEKVVVMQTVRD-QIGQHVFTAHRLDRPTSGV 60 ILYQD L+A++KP+G L H R ++ T+RD + +F HRLDR TSG Sbjct: 81 ILYQDRDLIAIDKPAGLLTVGHEGERQRTAYRLLADTLRDGSREKKLFVVHRLDRDTSGA 140 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFARED 119 +L + E R L + ++ ++ Y A+ G EE V+ L E ++ Sbjct: 141 VLFARNEEMKRALQEDWDSLVKERIYLAVTVGAPEREEGVVRSWLRETSTRVVYSGG-PG 199 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 G + AVT Y+ LA + Y LV + TGRK+Q+R H+A L P+ GD Sbjct: 200 SGAKEAVTRYKVLAR-----------SGEYALVRVALDTGRKNQIRVHMADLGCPVAGDK 248 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 K+GD SG + RL LHA +L++T P TG PLT+ A + ++++ Sbjct: 249 KYGD----GSGP----MDRLALHAVRLTITDPRTGAPLTVTAPVPKSFLR 290 >UniRef50_C1ZMP6 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZMP6_PLALI Length = 246 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 117/241 (48%), Gaps = 24/241 (9%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQ----TVRDQIGQHVFT--AHRLDRPT 57 IL++D + V KP+G L DE +V + +R Q +V+ HRLDRP Sbjct: 6 ILFEDNHCLVVEKPAGVLTMGDETG-DENMVQLAMDDLKIRHQKPGNVYVGLVHRLDRPV 64 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA--VLDYPLVEELDKIADKF 115 SGVLL+ +S+A L+ QF + + +K Y AIV G L A ++D+ + ++ Sbjct: 65 SGVLLLAKTSKAASRLSAQFREREPEKVYLAIVEGQLNPAAGEIVDWLIKDQERNHTRVT 124 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + + G + A YR L T+ P LVE++P TGR HQ+R LAH I Sbjct: 125 SPQTPGAKQAKLRYRQLETLVTPEGI-------RTLVEVQPMTGRSHQIRVQLAHAGASI 177 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD ++G G + + LHA L+ HP +PLTI+A L W ++ Sbjct: 178 LGDLRYGS-------KTPLG-KMIALHARSLTFEHPVQKQPLTIYAPLPSDWKPFMNPLL 229 Query: 236 W 236 W Sbjct: 230 W 230 >UniRef50_Q30NR3 Pseudouridine synthase n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30NR3_SULDN Length = 304 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 35/222 (15%) Query: 6 YQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGL 65 + +E V +KPSG L+H +R + ++ ++ Q G + AHR+D+ TSG++L Sbjct: 74 FIEERFVVFDKPSGMLIHPQ--NRFTEYSLIDELKAQFGMNANIAHRIDQETSGLVLCAK 131 Query: 66 SSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLV---EELDKIADKFAREDKGP 122 ++ + F++ ++K+Y A+V G L EE +D PL+ +E + + D Sbjct: 132 DKKSEVDIKMMFQERDMKKKYLAMVHGELKEELRIDAPLLRYDDEKSALVRMVVKVDPTG 191 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + ++T R L +P T LVE P TGR+HQ+R H+ H++HPI+GD +G Sbjct: 192 KESLTFVRPLKY---------FPITDTTLVECSPHTGRQHQIRVHMFHMKHPIVGDPVYG 242 Query: 183 ----------------DLRQNRSGAEHFGLQRLMLHASQLSL 208 D R SGA +RL+LHA++L Sbjct: 243 QSEESVVRYLDRKIERDERVKLSGA-----KRLLLHANELEF 279 >UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQN9_ALCBS Length = 317 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 18/231 (7%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH--VFTAHRLDRPTSGVL 61 +Y+D+ L NKP+G VH + +++ +R Q + HRLDR TSG++ Sbjct: 97 CVYEDDQLFVFNKPAGLAVHGGS---GVSLGLIEALRVMFPQERELELVHRLDRDTSGLI 153 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 ++ R L + + QI+KRY + +G+ +E LD PL++ ++ ++ R + Sbjct: 154 MVARRRSFLRKLQRLMQGGQIEKRYWLLCQGFKGKERTLDAPLLKMMNG-NERIVRVSRE 212 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 +P+VTH+R L R+ + LVE +TGR HQ+R H ++GDSK+ Sbjct: 213 GKPSVTHFRLLE---------RFAQAQ--LVEATLETGRTHQIRVHSQFGGFALLGDSKY 261 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 G + AE G +RL LHA L HP TG+ LT+ A LDD + L+ Sbjct: 262 GIAKGEALLAE-IGRRRLCLHARTLVFVHPNTGKRLTVTAPLDDDYEAILT 311 >UniRef50_Q7MA82 Pseudouridine synthase n=1 Tax=Wolinella succinogenes RepID=Q7MA82_WOLSU Length = 308 Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 119/250 (47%), Gaps = 30/250 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LE L+ + +KP+ LVH E +M VR + GQ AHR+D+ TSG++ Sbjct: 70 LEPLFIAPFFALFDKPADLLVHPK--GTFEHYSLMDEVRLRFGQEADLAHRIDKETSGIV 127 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF-AREDK 120 L+ S + G +L F +++K Y A+VRG + E +LD+PL + ++ R D+ Sbjct: 128 LITRSKKEGAILKINFFNREVKKCYWALVRGKMEGERILDFPLKAQSKRLDLGVRMRVDE 187 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 + ++T + L + T LVE P TGR HQ+R HLAH +PI+GD Sbjct: 188 KGKSSLTQIKALDYEALSDTT---------LVEASPLTGRTHQIRLHLAHAGYPILGDPL 238 Query: 181 HGD--------LRQNRSGAEH---FGLQRLMLHASQLSLTHPFTGEPLTIHAGLD----- 224 +G L Q E FG RLMLHA L P+ G I +G D Sbjct: 239 YGTSDELSRAYLEQAMDQEERRRCFGASRLMLHAQGLGF--PYKGSWYEIVSGQDFLGEV 296 Query: 225 DTWMQALSQF 234 + +AL QF Sbjct: 297 EGAREALRQF 306 >UniRef50_UPI0001C36F41 hypothetical protein RflaF_04377 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36F41 Length = 446 Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 108/222 (48%), Gaps = 29/222 (13%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTA-HRLDRPTSGVLLM 63 +Y+ + ++ NKPSG VH S + + + F A +RLDR TSG+ ++ Sbjct: 81 VYESDGVIVFNKPSGMPVHPSI--KHQGDTLGNKFAAMFPDLTFRAVNRLDRDTSGLCVV 138 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 ++ A Q + +K Y+A V G + E +D P+ E + I + RED Q Sbjct: 139 AKNALA-----ANALQGRCEKVYYAAVTGEIPETGTIDAPIARERESIIIRCVREDG--Q 191 Query: 124 PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD 183 AVTHYR +A RY L E+ +TGR HQ+R H +++ HP+ GD +G Sbjct: 192 RAVTHYRRIAY-----------NGRYSLAEIHLETGRTHQIRVHFSYIGHPLAGDDLYGG 240 Query: 184 LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDD 225 R + + R LH Q+S T P TGE +T+ A L D Sbjct: 241 TRCD--------IGRQALHCGQMSFTDPVTGEEVTVRAELPD 274 >UniRef50_B2S2H8 Pseudouridine synthase n=2 Tax=Treponema pallidum RepID=B2S2H8_TREPS Length = 216 Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 114/231 (49%), Gaps = 23/231 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L I++QD +VAV+KP+G V R V V+ ++ Q+G +F HRLD+ T+GVL Sbjct: 3 LPIIFQDAAVVAVDKPAGLAVQPGARVR---VCVVDVLQKQLGVRLFPLHRLDKDTAGVL 59 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIADKFAREDK 120 L + A L ++ KRY A+ G E + P+ AR + Sbjct: 60 LFAKHARAAALYQGILGSMRVIKRYRALCFGRPPRECGDIRVPIRT------GTAARRRQ 113 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 + A T YR L T + +EL +GR HQ+R HLA L PIIGD K Sbjct: 114 VVRAAHTAYRVLRA-----------TDTHTYLELTLHSGRTHQIRIHLAALGCPIIGDDK 162 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +GD +N++ A +G++RL L A L L P +PL + A + +++AL Sbjct: 163 YGDFARNKACARAWGVKRLQLFAHSLVL--PCACKPLVLRARMPVHFLRAL 211 >UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ60_LAWIP Length = 541 Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 20/224 (8%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-----VMQTVRDQIGQHVFTAHRLDR 55 LEIL+ DE L +NKP G VH + ++ +V + +Q G HR+D+ Sbjct: 82 FLEILFSDEHLAIINKPPGLTVHPAPSCQESTLVHRLLKYFPKLIEQGGLRPGIVHRIDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG+L + L+ + L++ F +I K Y A+V G E + PL + K K Sbjct: 142 DTSGLLCIALTEDTRLKLSKIFLDRKINKEYLALVHGVPSMEGYIAVPLGRD-PKTKVKV 200 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A KG +PA T +R L R Y ++ L +TGR HQ+R H+ H+ HP+ Sbjct: 201 AVNPKG-KPAHTEWRVLH---------RGKNDVYSILALTIQTGRTHQIRVHMKHIGHPL 250 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTI 219 +GD + N++ F R MLHA +LS HP TG+ + Sbjct: 251 VGDKLYAGGHVNKT----FQCNRQMLHAWKLSFEHPITGKKMNF 290 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 28/243 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQH----VFTAHRLDR 55 +EI+Y+D L +NK +G +VH + +V ++ ++D G + HRLD+ Sbjct: 99 IEIIYEDNDLAVINKKAGIVVHPANGHYSGTLVNAILYHIKDLSGINGEIRPGIVHRLDK 158 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG+L++ + +A L+Q F ++K Y AI++G L +++ +I + Sbjct: 159 DTSGLLIIAKNDKAHLKLSQMFHDKTVKKIYLAILKGKLNQKS----------GRIVTQI 208 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRY--PTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 R DK + +T L + + + T ++ LV++ +TGR HQ+R H+ HL + Sbjct: 209 GR-DKNDRKKMTVINDLNSGKTAITNYEVISQTEKFTLVKVHIETGRTHQIRVHMKHLGY 267 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GDS +G R+ E +R MLHA +L HP T E L A L + + +AL + Sbjct: 268 PILGDSVYG-----RTDTE----KRQMLHAYKLEFQHPITEENLEFIAKLPEDFKKALKK 318 Query: 234 FGW 236 G Sbjct: 319 CGL 321 >UniRef50_A6Q113 Pseudouridine synthase n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q113_NITSB Length = 299 Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 27/222 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L+ +++ + V +KPSG +VH +R+ ++ +R + G HR+D+ TSG++ Sbjct: 70 LKPIFETKDFVLYDKPSGIMVHPR--NRNTHYTLIDEIRYRYGPQANIVHRIDKETSGLV 127 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELD--KIADKFARED 119 L + EA + L Q FE QIQKRY A+VRG + ++ V++ P+ D KI K + Sbjct: 128 LASTNKEAEKALKQMFEHKQIQKRYLALVRGNIEKQLVIEEPIALNRDYSKIKLKVKIDP 187 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 G + T+ P+ + LVE P TGR+HQ+R HL H++HPI+GD Sbjct: 188 SG--------KYAKTIINPLKQ----FGSFTLVEAIPITGRQHQIRIHLFHVKHPILGDP 235 Query: 180 KHGD-----------LRQNRSGAEHFGLQRLMLHASQLSLTH 210 +G L G RLMLHA + T+ Sbjct: 236 IYGPSTNESIRYLDGLMDEEERLVVTGATRLMLHAYAVEFTY 277 >UniRef50_A6LIG6 Pseudouridine synthase n=5 Tax=Bacteroidales RepID=A6LIG6_PARD8 Length = 304 Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 29/223 (13%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-----HVFTAHRLDR 55 +L I+++D+ L+ +NK G L + DR ++ + + D + + +F HRLDR Sbjct: 90 LLRIVWEDDDLIVINKREGLLSVST--DRIKERTAYRILSDYLKECDPRNKIFVLHRLDR 147 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADK 114 TSG+++ + + L + + Q+ Y A++ G ++ ++ LVE +K Sbjct: 148 DTSGIMMFAKNQKVKEQLQSNWSEAITQRTYVAVIEGRPEKDTDLIVSNLVE--NKHMQV 205 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + +D + A+T YR L T RY LVEL+ +TGRK+Q+R + + HP Sbjct: 206 YVTQDGDGKEAITRYRLLQT-----------NNRYSLVELDLETGRKNQIRAQMQSIGHP 254 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPL 217 I GDSK+ GAE RLMLHA +L HP TGE + Sbjct: 255 IAGDSKY--------GAETNPAGRLMLHARRLCFIHPVTGEEM 289 >UniRef50_Q3YSF8 Pseudouridine synthase n=5 Tax=canis group RepID=Q3YSF8_EHRCJ Length = 308 Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 19/206 (9%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D+ ++ +NKP+G V R ++ +RD G+ + HRLD+ TSG+L++ Sbjct: 93 ILYEDDDVLIINKPAGVSVQGGTKVRISISDILDKIRD--GESMRIVHRLDKDTSGILML 150 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFAREDKGP 122 ++ A RL+ +F+ +++K+Y A+ +G + +++ + ++ + + Sbjct: 151 ARNARASRLIMHEFKNRRVEKKYLALTQGIPKNDVGEINHSITKKKHNFYENIGTGNSIF 210 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 Q A+T + L + + GL+EL+PKTGRKHQ+R HL+H+ IIGD K+G Sbjct: 211 QEAITSFFVLKKLPYDI----------GLLELKPKTGRKHQIRIHLSHIGCSIIGDKKYG 260 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSL 208 H L LHA LS+ Sbjct: 261 KF------CNHVLNDHLQLHAHFLSI 280 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 25/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ----IGQHV--FTAHRLDR 55 L+I+Y+DE LV VNK +G +VH + + D +V Q IG + HRLD+ Sbjct: 82 LDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHCQNLSGIGGVLRPGIVHRLDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG+L++ + A + LA+Q ++ + + Y IV G+L +E ++D P+ + K Sbjct: 142 DTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLKNKEGIIDLPIGRH-PRDRQK 200 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A G + A T Y+ L + L++ + TGR HQ+R H ++L HP Sbjct: 201 MAVVSNG-KTAQTVYKVLEEF----------NKGFTLIQAKLLTGRTHQIRVHFSYLGHP 249 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD K+G QN FG++R MLHA +LS HP +GE L A L + + + L++ Sbjct: 250 VLGDPKYG--HQNNP----FGVKRQMLHAIKLSFIHPRSGELLEFTAPLPEDFQRVLAKL 303 >UniRef50_B6BGX6 Pseudouridine synthase n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BGX6_9PROT Length = 308 Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 31/217 (14%) Query: 8 DEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSS 67 DE++V +KPSG L+H +R ++ ++ Q G+ AHR+D+ TSG++L + Sbjct: 77 DEFVV-FDKPSGVLIHPQ--NRKTPYSLIDELKYQYGRDANIAHRIDQETSGLVLCAKNK 133 Query: 68 EAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELD-----KIADKFAREDKGP 122 E+ R + FEQ ++K+Y A+V G L E ++ PL+ D ++ K E K Sbjct: 134 ESERDIKMMFEQRDMKKKYLALVHGELKESICIEEPLLRREDESAIVRMVVKVHEEGKAS 193 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + + + A +M LVE P TGR+HQ+R HL H++HPI+GD +G Sbjct: 194 KTDIRPLKYFAETDM------------TLVECSPYTGRQHQIRVHLFHVKHPIVGDPIYG 241 Query: 183 DLRQN-----------RSGAEHFGLQRLMLHASQLSL 208 ++ E G RL+LHA++L Sbjct: 242 QSEEDIVKFLDKELDAEKRIELSGASRLLLHANELEF 278 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 56/262 (21%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT---------AHR 52 L+++Y+DE+L +NK +G +VH + + + +V + + G+++ + HR Sbjct: 89 LDVVYEDEYLAIINKKAGMIVHPGFGNPEGTLV--NAILYRFGENLSSGKEFNRPGIVHR 146 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDK-- 110 LDR TSG++++ + L+ F + +I+K Y AI G + E +K Sbjct: 147 LDRGTSGLIIIAKNDLTHAKLSDMFARREIKKTYFAITTG------------IPEPEKGE 194 Query: 111 IADKFAREDKGPQP---------AVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRK 161 I AR +K P+ A+THY+ + T + LVE+ P TGR Sbjct: 195 IETYLARSNKNPRTICVTNEGRYALTHYKTIKTWHY-----------FALVEINPATGRM 243 Query: 162 HQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFG-----------LQRLMLHASQLSLTH 210 HQ+R H AH+R+PI+GD + R +S L+R LH+ +L H Sbjct: 244 HQIRVHFAHIRYPILGDLLYNSRRYVQSLVPQNMKKKVTELLVNHLRRQALHSWKLEFFH 303 Query: 211 PFTGEPLTIHAGLDDTWMQALS 232 P TG P+++ A + D L+ Sbjct: 304 PITGYPISVSAPIPDDIQYTLN 325 >UniRef50_UPI00016C40E0 pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C40E0 Length = 238 Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 111/235 (47%), Gaps = 23/235 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSW----LDRDEKVVVMQTVRDQIGQHVFTAHRLDRPT 57 L +LY+D LV VNKP+ L L+ + + G ++ HRLDRP Sbjct: 9 LAVLYEDHHLVVVNKPAPLLTQAPPGVPNLEERVRAYIKDKYAKPAGVYLGVPHRLDRPV 68 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAR 117 SGV+ +++A + + QFE ++K Y A+V G +VE + D + R Sbjct: 69 SGVVCFARNTKAAQRVHSQFEHRSVRKVYWALVEG-----------VVEPDAGVWDDYIR 117 Query: 118 EDKGPQPAVTHYRG-----LATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + + A + G LAT+E V TR +EL P TGR HQLR A Sbjct: 118 KVENEARAARGHEGEPGAKLATLEFRVLERFAAHTR---IELHPLTGRMHQLRVQSAWRG 174 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 HP+IGDS +G +R AE + + LHA +L+ HPFT + L I A + W Sbjct: 175 HPVIGDSLYGSVRPFGPPAELPRDRVIALHARRLTFEHPFTKQELVIEAPVPAYW 229 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 99.8 bits (247), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 125/239 (52%), Gaps = 27/239 (11%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQH----VFTAHRLDRPTS 58 +Y+D++L +NK +G +VH S ++ +V +M ++D G + HRLD+ TS Sbjct: 78 VYEDKYLAIINKYAGMVVHPSKGHEEDTLVNAIMYKIKDLSGINGDLRPGIVHRLDKNTS 137 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + L++ F+ +I+K Y+AIV+G + +++ ++ K A Sbjct: 138 GLIIIAKDDKTHFKLSEMFKNKEIKKIYYAIVKGKVNKKSGRIETMIGRNPNDRKKMAVV 197 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D G + A+T++ + + E ++ L++++ +TGR HQ+R HL+H PI+GD Sbjct: 198 DNG-KLAITNFEVIDSNE-----------KFSLLKVDLETGRTHQIRVHLSHFFFPILGD 245 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 S +G R++ R MLHA L+ HP T E + + +++ALS R Sbjct: 246 SVYG--RKDE-------YDRQMLHAYMLNFIHPITLEKIDVIGNFHSDFLRALSNTKLR 295 >UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K7_HALNC Length = 346 Score = 99.8 bits (247), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 123/248 (49%), Gaps = 21/248 (8%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+Y+DE L+AVNKP+G VH + ++ + +G+ + AHR+DR TSG+L++ Sbjct: 111 IVYEDEALLAVNKPAGLAVH-GGSNIPFGLIELMRQHTGLGEKLELAHRIDRDTSGLLIL 169 Query: 64 GLSSEAGRLLAQQFE-QHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKG 121 + L QF + +K+Y AIV G W + +D PL + + + + Sbjct: 170 AKTRATLHSLQTQFRPEGHAEKQYLAIVHGHWPDKLKRVDAPLEKWQGEGESHRVQVNPQ 229 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + AVTH+ LA L+ + +TGR HQ+R H AH HPI+GD K+ Sbjct: 230 GKEAVTHFAVLAA-----------NKNATLLRAQLETGRTHQIRVHTAHENHPIVGDEKY 278 Query: 182 GDLRQNR-----SGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 G ++ +GA L+LHA +L LTHP T +PL + A + D W Q Sbjct: 279 GQREWDKRLFPSTGASARRRPPLLLHAYRLMLTHPQTEQPLQLTAPIPDKWRSLAQQLNL 338 Query: 237 RGLLPENE 244 LPE++ Sbjct: 339 --TLPEHD 344 >UniRef50_B1Y046 Pseudouridine synthase n=43 Tax=Proteobacteria RepID=B1Y046_LEPCP Length = 256 Score = 99.8 bits (247), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 107/216 (49%), Gaps = 15/216 (6%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ-IGQHVFTAHRLDRPTSG 59 +++IL+ D+ L+ V KP+G L S R E + R Q I HRLD TSG Sbjct: 43 LIDILHHDDSLLVVRKPAGLL---SVPGRGEHLQDCVAARVQAIWPDALIVHRLDMATSG 99 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFARE 118 +++M A R L FE + K+Y A+V G + +A +D PL + + Sbjct: 100 LMVMARGPAAQRALGSAFEHRSVTKQYVAVVAGDVAGDAGSVDLPLCADWPNRPRQKVDA 159 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 G +P++TH+R TG TR +ELEP TGR HQLR HL L HPI+GD Sbjct: 160 AMG-RPSLTHWRRATPAHEGSTTGDIDRTR---LELEPVTGRSHQLRVHLLALGHPILGD 215 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTG 214 + + R RL+LHAS+++L HP G Sbjct: 216 TLYAPDAVQRMA------PRLLLHASRIALPHPAGG 245 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 99.8 bits (247), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 124/241 (51%), Gaps = 27/241 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQHVF----TAHRLDR 55 LEILY+DE ++ VNK G +VH + + +V ++ R+ G + HR+D+ Sbjct: 107 LEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLYHCRNLSGINGVLRPGIVHRIDK 166 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEE-LDKIAD 113 TSG+L++ + A + LA+Q + H + +RY AIV G + E ++ P+ + D+ Sbjct: 167 DTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGTVEAPIGRDPADR--K 224 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K A + + AVTHY L + L+E +TGR HQ+R H+A+L+H Sbjct: 225 KMAVVFQNAKEAVTHYEVLERFR-----------DFTLLEARLETGRTHQIRVHMAYLKH 273 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++GD +G R+N FGLQ MLHA L HP +GE + A + + L + Sbjct: 274 PVLGDPLYGP-RKNP-----FGLQGQMLHAQLLGFQHPRSGEYMEFSAPASGMFQKVLEE 327 Query: 234 F 234 Sbjct: 328 I 328 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 99.8 bits (247), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 114/244 (46%), Gaps = 25/244 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQHVF----TAHRLDR 55 LE+ ++D ++ VNKP G +VH + +V ++ RD G + HRLDR Sbjct: 81 LEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVNALLHHCRDLSGINGILRPGIVHRLDR 140 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG+L++ + A LA Q + + +RY A+V G E +D P+ + + Sbjct: 141 DTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTALVHGRPRRETGTVDAPIGRH-PRDRQR 199 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A + + A THYR + + ++ L+EL TGR HQ+R H+AH+ HP Sbjct: 200 MAVTPRSGRAARTHYRVVRRFD-----------KFSLLELTLDTGRTHQIRVHMAHVGHP 248 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD K+G R GL+ LHA L HP TGE L A L L + Sbjct: 249 LVGDLKYGHARPE------LGLEGQFLHAGTLGFRHPRTGEVLVFEAPLPSELAAVLERL 302 Query: 235 GWRG 238 G Sbjct: 303 SPLG 306 >UniRef50_Q0A8Q9 Pseudouridine synthase n=4 Tax=Ectothiorhodospiraceae RepID=Q0A8Q9_ALHEH Length = 327 Score = 99.8 bits (247), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 114/234 (48%), Gaps = 20/234 (8%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D+ L+ ++KPSG VH + V++ R + HRLDR TSG L++ Sbjct: 100 ILYEDDRLLVIDKPSGLAVHGGSGLAWGLIEVLRQARPS-APFLELVHRLDRATSGCLMV 158 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 A R L +Q + KRY A++ G L + P+ L++ GP Sbjct: 159 AKRRSALRELHEQLRTGAVHKRYLALLTGALGRGPI---PVEAPLER--------RSGPA 207 Query: 124 PAV---THYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 V +H + TV VA T L E + TGR HQ+R H AHL PI GD + Sbjct: 208 GGVRVASHGKLARTVFRAVARPGGMT----LAEADIATGRTHQIRVHAAHLGMPIAGDDR 263 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +G+ NR GL+RL LHA +L L+ P TG+PL+I A L D ++Q Sbjct: 264 YGERAVNRR-LRGLGLKRLFLHAHRLELSAPGTGQPLSIEAPLPDELAAVVAQL 316 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 113/225 (50%), Gaps = 38/225 (16%) Query: 2 LEILYQDEWLVAVNKPSGWLVH-----------RSWLDRDEKVVVMQTVRDQIGQHVFTA 50 L+++Y+D + +NKP+G +VH + L R + + +R I Sbjct: 91 LDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPDLAIGGELRPGI------V 144 Query: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPL-VEELD 109 HRLDR TSG+L++ +A R L Q + +++K Y A+V G E +D P+ + D Sbjct: 145 HRLDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRPPETGTIDAPIGRDPRD 204 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 ++ + A G +PA THYR L T Y L+E++ +TGR HQ+R HL Sbjct: 205 RL--RMAVVPDG-RPARTHYRLLDTF-----------GDYSLLEVQLETGRTHQIRVHLR 250 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTG 214 HL +PI+GD +G R H L R LHA+ L L HP +G Sbjct: 251 HLGYPIVGDPVYGPRR------SHLHLSRQFLHAAYLGLVHPRSG 289 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 121/248 (48%), Gaps = 42/248 (16%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRD-----QIGQHVFTAHRLD 54 L ILY+DE L+ +NKP+G +VH + + +V +M V+D Q + HRLD Sbjct: 85 LNILYEDEELIVINKPAGLIVHPTPSIKTGTLVNALMHHVKDLDKTMQDPNRLGIVHRLD 144 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 + TSGVL++ ++ + LL+++F++ + K Y AIV G L E E ++ PL Sbjct: 145 KETSGVLVVAKNAFSHHLLSKEFKERKTMKYYLAIVEGTLKEKEGEINLPL--------- 195 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYG----------LVELEPKTGRKHQ 163 G P + H R + V G+ T Y LV + +TGR HQ Sbjct: 196 -------GRHPILRHKRAV------VYNGKEAITEYKTLKEFGDLATLVWIRLRTGRTHQ 242 Query: 164 LRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 +R H ++ +P+IGDS +G + ++ G R MLHA +L HP T E + A L Sbjct: 243 IRVHFKYIGNPLIGDSLYGKNKIEKNLQIPVG--RQMLHALKLGFYHPKTKEWMEFLAPL 300 Query: 224 DDTWMQAL 231 D + L Sbjct: 301 PDDFKNLL 308 >UniRef50_C4V3I7 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3I7_9FIRM Length = 294 Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 114/228 (50%), Gaps = 32/228 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD---QIGQHV--FTAHRLDRP 56 L I+Y+D+ L+ ++KP+G LVH + ++ + VR G H+ HRLDR Sbjct: 77 LSIIYEDDDLLVLDKPAGQLVHPT--TKETHGTIANAVRGYYAACGVHLDFHPCHRLDRN 134 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKF 115 TSG+LL+ E +AQQ + +++ Y A++ G L E +D P+ L I + Sbjct: 135 TSGLLLIAKHPEVQYQIAQQ---NTLRREYLALIAGSLTPPEGCIDVPIARALPSIILRC 191 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + + A THY + T RY L+ L+ TGR HQ+R HLAHL HP+ Sbjct: 192 VSTEG--KSACTHYVTVQT-----------DGRYSLLRLQLDTGRTHQIRVHLAHLGHPL 238 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 +GD +G R + R LH++ L+L HP T + L + A L Sbjct: 239 LGDDLYGGTRAE--------IARHALHSAHLTLVHPRTKKMLALSALL 278 >UniRef50_B1ZRU1 Pseudouridine synthase n=2 Tax=Opitutaceae RepID=B1ZRU1_OPITP Length = 268 Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 121/258 (46%), Gaps = 41/258 (15%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 IL++D+ ++A +KPSG L+ D+ ++ +M V + G V HRLD TSG+LL Sbjct: 6 ILFEDDAMIAFDKPSGLLIAPDRWDK-QRENLMGLVHARFGHGVANVHRLDADTSGLLLC 64 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIADKF------- 115 + A L+ QF+ +QK Y ++V EEA+ + P+ ++ + D F Sbjct: 65 AKTKPALDFLSGQFQAKTVQKTYLSLVVVLPPEEAMKVVKPIRDDAGGLPDAFQVDLALG 124 Query: 116 ----------AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLR 165 + +G + VT +R L R+ LV P+TGR HQ+R Sbjct: 125 QDERQPGRMRVFKGRGGKDCVTDFRVLERF-----------GRFALVSCHPQTGRTHQIR 173 Query: 166 RHLAHLRHPIIGDSKHG---------DLRQNRSG--AEHFGLQRLMLHASQLSLTHPFTG 214 HLA PI+ D +G DL++ G E + RL LHAS+L+ HP T Sbjct: 174 VHLAAAGAPILNDPFYGNPEIKLLLSDLKRRYKGRDEEKPLIDRLALHASELTFRHPATR 233 Query: 215 EPLTIHAGLDDTWMQALS 232 E LT+ A L + AL Sbjct: 234 ELLTLQAPLPHEFEIALK 251 >UniRef50_A6GAA8 Pseudouridine synthase, RluA family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAA8_9DELT Length = 311 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 15/232 (6%) Query: 2 LEILYQDEWLVAVNKPSGW---LVHRSWLDRDEKVVVMQTVRDQIGQ-HVFTAHRLDRPT 57 + +++ E V ++KP+G V + + + ++ Q + + + +V HRLD+ Sbjct: 85 VRFVHRGEDFVVLDKPAGVPVSAVRETCVGSLSEALIHQLESEGLERPYVGVVHRLDQGA 144 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAR 117 SG++L + A + L +QF H+I++ Y V G + D PL++ + Sbjct: 145 SGLVLFTIRDVANKSLHKQFRDHEIRRGYRVRVTGEPPAQLRCDAPLIKLRSGGVKVGSP 204 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D +PA TH+R +A V+ L+++E +TGR HQ+R H AHL PI+G Sbjct: 205 GDGRSKPATTHFRHVARVDGEAGPEH-------LLDVEIETGRTHQIRAHAAHLGFPIVG 257 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 D ++G + +G++H RL LHA L HP TG P + L D W Q Sbjct: 258 DRRYGADGEGEAGSDH---SRLCLHARSLEFEHPLTGAPQSFTCELPD-WAQ 305 >UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWB7_HALOH Length = 310 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 26/227 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQH--VFTAHRLDRPT 57 L+I+Y+D L+ +NKP+ LVH + +++ +V V+ +R+Q G + V HRLDR T Sbjct: 93 LDIIYEDRHLLVINKPANMLVHPTPVEKSNTIVNGVLYHMRNQ-GNYNLVRPIHRLDRNT 151 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFA 116 +G+LL+ + A + QF+ + I + Y A V G + ++ ++ P+ + D + + Sbjct: 152 TGLLLIAKNQYAHNYITHQFQNNNIHREYLAFVHGNVEFKKESINAPIGKTRDSLIKRKV 211 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 G + AVTH + + P L+ ++ +TGR HQ+R HL+HL HP++ Sbjct: 212 DHTLGKR-AVTHIKVVK-----------PGGLISLIRVKLETGRTHQIRVHLSHLGHPLL 259 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 GD+ + G E ++R LH+ +++ PF + +T A L Sbjct: 260 GDTLY--------GGEDILIKRPALHSYKVTCCLPFKHKEVTFKAPL 298 >UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whipplei RepID=Q83G23_TROWT Length = 303 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 114/222 (51%), Gaps = 28/222 (12%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRS--WLDRD-----EKVVVMQTVRDQIGQHVFTAHRL 53 +L ++Y D+ L ++KP+G H S W ++ +D+ G HRL Sbjct: 75 LLRVIYSDDDLFVIDKPAGVAAHASPGWCGPTVTGCLSGLLAACGPQDRQG----IVHRL 130 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIA 112 D TSG++++ S A L F I KRY A+V+G+ V++ P+ +L K Sbjct: 131 DANTSGLMVLAKSDLAYHNLKAAFRDRAIHKRYKALVQGYPDPSSGVINAPIGRDL-KHR 189 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 D+F + G + AVT Y +T E+ YP + L+ + PKTGR HQ+R H + LR Sbjct: 190 DRFCIDYSG-RDAVTQY---STEEV------YPG--FTLLSVAPKTGRTHQIRVHFSALR 237 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTG 214 HP++GD K+G + ++ L+R LHA LS THP +G Sbjct: 238 HPLVGDVKYG---ADPVFSQKVNLKRQWLHAYHLSFTHPVSG 276 >UniRef50_Q7NBQ4 Pseudouridine synthase n=1 Tax=Mycoplasma gallisepticum RepID=Q7NBQ4_MYCGA Length = 312 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 27/235 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L+I+Y+D+ L+ VNKP+ L H + + + ++ ++ Q V+ AHRLD+ T+G++ Sbjct: 84 LDIVYEDDDLIIVNKPTNMLSHPTTHNEPDTLLNCLMYHNK-KQKVYLAHRLDKDTTGLI 142 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE--AVLDYPL--VEELDKIADKFAR 117 + + +A + +Q + +I KRY+ + + E AV+D P+ +++ D KF Sbjct: 143 VATKNFKALEKIQEQITK-RIMKRYYLAIVHYPFNELRAVIDAPIGYLKDHDL---KFGV 198 Query: 118 ED-KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 E+ K P+ A+T L +Y L++ E TGR HQ+R H+ ++H II Sbjct: 199 ENTKNPKNAITKIYVLDQ-----------NKKYALIKCELLTGRTHQIRVHMDFIKHNII 247 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 D +G + R+ + F LHA QL LTHP T L D+ +M+ L Sbjct: 248 NDPLYGVKGEQRTDYKQF------LHAYQLELTHPTTNVSLFFEVKPDEVFMKKL 296 >UniRef50_C0R043 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0R043_BRAHW Length = 217 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 116/233 (49%), Gaps = 26/233 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 ++I+Y+D + +A++K +G V + ++ +++ I +++ HR+D+ TSG++ Sbjct: 1 MKIIYEDNYFIAIDKEAGIEVDDNLIN------IIKKEYSHI-DNLYLVHRIDKFTSGIV 53 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAREDK 120 ++ E + F+ I K YHAIV G + +E +D + + + K Sbjct: 54 ILARDEETKKYFEDAFKNKTINKVYHAIVNGKVKKENGTIDISIGIDKKNPNRRIPLSIK 113 Query: 121 -GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 G + A+THY+ L + + L+EL+P TGR HQ+R HL+++ HPIIGD Sbjct: 114 EGGESAITHYKVLKRL-----------NEHTLLELKPLTGRTHQIRVHLSYIGHPIIGDK 162 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 + A+ + ++ L A ++ HPFT + + I+ + ++ L Sbjct: 163 IYS------KNADIYKMKGFALIAKEIHFVHPFTKKDIDINIKYNKEFLIRLK 209 >UniRef50_D0XS67 Pseudouridine synthase n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XS67_9CAUL Length = 350 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 112/244 (45%), Gaps = 34/244 (13%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ++Y+D+ ++A+NKP G V + V + + + + HRLDR TSGVLL+ Sbjct: 113 VIYEDDLVIALNKPWGLAV-QGGTKTTRHVDRLLSAWGEGMERPRLVHRLDRDTSGVLLL 171 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-----------LMEEAVLDYPLVEELDKIA 112 G EA + LA F + Q +K Y AIV G L + + DY ++ D Sbjct: 172 GKGPEAAKRLAGAFARRQAKKTYWAIVMGLPKPADGQISVHLKKSGINDYEIMRPADP-- 229 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 +D G +PA T Y A + R + L P TGR HQLR H+ + Sbjct: 230 -----KDPGAEPAETAY----------AVISHAAQRASWMALRPFTGRTHQLRAHMKAIG 274 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 HPI+GD K+GD + + G +L LHA ++ L HP G L + A + Sbjct: 275 HPILGDPKYGD----DASTQLSGPLKLQLHARRIELDHPAGGT-LVVEAPISAELRAGFE 329 Query: 233 QFGW 236 FG+ Sbjct: 330 HFGF 333 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 126/256 (49%), Gaps = 24/256 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLD-RDEKVVVMQ----TVRDQIGQH-VFTAHRLDR 55 L+ILY DE+L +NK + +VH + R +Q ++ D GQ+ HRLDR Sbjct: 91 LDILYDDEYLCVINKTANMIVHPGRGNYRGTLAGALQFHFDSLSDVAGQYRAGIVHRLDR 150 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSGVL++ + + L++QFE+ ++K YHAIV G + +A DY VE +++ + Sbjct: 151 DTSGVLVVAKDNTVHQHLSRQFEERSVEKEYHAIVWGEMQFDA--DY--VETYVRVSFR- 205 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 RE P + R AT R+ Y V+L+P+TGR HQLR H+ HL HPI Sbjct: 206 NRERMMVCPPGDNARQAATFYE--VQQRFRGFTY--VKLQPQTGRTHQLRVHMHHLGHPI 261 Query: 176 IGDS--------KHGD-LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 I D K D L + A+ + R LHA +L+ HP T + + A L Sbjct: 262 IADRLYEGKTCVKLSDILPETPEEADETLIDRQALHARRLAFNHPVTKKRMVFEAPLPAD 321 Query: 227 WMQALSQFGWRGLLPE 242 + + L + P+ Sbjct: 322 FQKTLDTLKTHAIKPK 337 >UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNZ6_9DELT Length = 535 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 30/227 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV----------VMQTVRDQIGQHVFTAH 51 L+I+Y D +V +NKP+G VH S D +V + T R + G H Sbjct: 83 LDIVYMDREMVVLNKPAGLSVHPSSSDPAPTLVHYLLYACPGLRLMTDRQRPG----IVH 138 Query: 52 RLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDK 110 RLD+ T+G+++ L+ EA LA QF ++ K Y A+V G L +E +++ PL + Sbjct: 139 RLDKDTTGLMVAALNQEAKEDLAGQFAGRRVHKTYLALVCGALKQDEGIINVPLARDQQS 198 Query: 111 IADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 A + A +G + A T Y+ L R P+ + LV+++ TGR HQ+R H +H Sbjct: 199 RA-RVAPSREG-RSARTAYKVLK---------RDPSGLWSLVQVQIFTGRTHQIRVHFSH 247 Query: 171 LRHPIIGDSKHGDLRQNRSGAEHFGLQRL----MLHASQLSLTHPFT 213 L HP++GD +G +R G + L RL +LH+S L + HP + Sbjct: 248 LNHPVLGDRIYGGTDWDRFGWKKRFLSRLAKRQLLHSSCLGIMHPVS 294 >UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytoplasma RepID=Q2NIN6_AYWBP Length = 306 Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 119/241 (49%), Gaps = 31/241 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG--QHVFT-----AHRLD 54 L+I+Y+D +L +NKP+ +VH S +K ++ + Q H+ T HRLD Sbjct: 82 LDIIYEDPYLAVINKPANLVVHPSL--SFQKTTLVNGLLHQFNTLSHIDTQRPGIVHRLD 139 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPL-VEELDKIAD 113 + T+G+L++ +++ L F+Q +I K Y A++ G+L ++ ++ P+ +++ Sbjct: 140 KNTTGLLIVAKTNDVSDKLQIAFQQRKITKIYWALIEGFLEDKGIIKLPIGRNNHNRLKM 199 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + + K AVTH++ L R+ + + L+E +TGR HQLR H + L+H Sbjct: 200 QVMPDGKT---AVTHFKTLQ---------RF--SHFSLMECNLETGRTHQLRAHFSFLKH 245 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GD + + H LH+ L HP T + L + A L + + L Sbjct: 246 PIVGDLLY-------DSSHHITPLGQFLHSKILKFNHPITNQNLILEAPLPTNFEKLLKT 298 Query: 234 F 234 F Sbjct: 299 F 299 >UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=Q03WF6_LEUMM Length = 312 Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 27/230 (11%) Query: 13 AVNKPSGWLVHRSWLDRDEKVVV-------MQTVRDQIGQHVFTAHRLDRPTSGVLLMGL 65 VNKP G +VH + +V + T+ + + HR+DR TSG+L++ Sbjct: 90 VVNKPQGMVVHPAAGHSSGTLVNALLHHSPLSTINGEFRPGI--VHRIDRDTSGLLMVAK 147 Query: 66 SSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFAREDKGPQP 124 + +A R L++Q + H+ Q+ Y+A+VRG E++ ++ P+ KI K +G + Sbjct: 148 NDKAHRSLSEQLKSHKNQRVYYALVRGEFTEDSGTIEAPIGRH--KIDRKKQAVIEGGRE 205 Query: 125 AVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDL 184 AVTH+R L RY Y L+++ +TGR HQ+R H++++ HP++GD +G Sbjct: 206 AVTHFRVLK---------RY--VGYTLLKVSLETGRTHQIRVHMSYIGHPVVGDPVYGTA 254 Query: 185 RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 Q G + L +LHA L+L P TG+ L+ + L D + ALS Sbjct: 255 -QKLDGTQ---LNGQLLHAKTLTLEQPTTGDELSFDSPLPDYFQFALSTL 300 >UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8FTI5_DESHD Length = 302 Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 113/240 (47%), Gaps = 29/240 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVH---RSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTS 58 LEILY+D++ +A+NKP+G +VH R VV + + HR+DR TS Sbjct: 83 LEILYEDDYFIAINKPAGQVVHPTPRYPRGTIGNAVVGYWLAKGEARPFRPIHRIDRNTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 GV+++G + A + +A Q +I K Y IV G +ME + + P+ D F + Sbjct: 143 GVVVIGKNQFAHQQMAWQHAHGRIHKCYRGIVEGQVMEDQGTIKAPIA----LAPDSFIQ 198 Query: 118 EDKGPQ--PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 P+ PAVT Y+ L RY L+E +TGR HQ+R H HL HP+ Sbjct: 199 RQISPEGSPAVTLYKVLE---------RYQDA--SLLEFILETGRTHQIRVHCQHLGHPL 247 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD + G + R LH+S HP TGE TI A L + + L + Sbjct: 248 LGDDLY--------GGNLARINRQALHSSIYEFNHPLTGELTTIQAPLPEDLQRLLRELA 299 >UniRef50_Q12L72 Pseudouridine synthase n=17 Tax=Shewanella RepID=Q12L72_SHEDO Length = 230 Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/214 (35%), Positives = 109/214 (50%), Gaps = 26/214 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVH--RSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSG 59 L+I Y D ++ +NKPSG L + R+ D + +Q + + HRLD TSG Sbjct: 27 LDIRYLDRDIIVINKPSGLLSNPGRAPETYDTAITRLQRLYPE----TILIHRLDCDTSG 82 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFARE 118 +++ + +A L QF+ Q +K Y A V G ++ +++PL D + F + Sbjct: 83 IMIFARNKKAESNLKTQFQNRQAKKVYIAEVSGCFEHQDGKVNFPLGP--DPMTPPFQQV 140 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + +PA+T+YR L E +T LVEL+P TGR HQLR H+ L H IIGD Sbjct: 141 IESGKPALTYYRLL---EHRASTS--------LVELKPHTGRTHQLRVHMKALGHTIIGD 189 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPF 212 +GD + A H RL LHA L+L HPF Sbjct: 190 EFYGD--ETVIAASH----RLNLHAQSLTLLHPF 217 >UniRef50_C6E472 Pseudouridine synthase n=4 Tax=Geobacter RepID=C6E472_GEOSM Length = 302 Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 127/258 (49%), Gaps = 44/258 (17%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV-----MQTVRDQIGQHVFTAHRLDRP 56 L+IL++D W++++NK G VHR+ D DE +V + RD +G+ + +RLD+ Sbjct: 78 LDILFEDSWIISLNKAPGLSVHRTE-DPDEVNLVDLAETLLQKRDGVGR-LRPVNRLDKG 135 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 TSG +++ S+ A + + ++ + K Y A+V G L ++ V+D PL Sbjct: 136 TSGAIILAKSAVAAGMFGKMVQEEGLGKLYLALVEGKLQKQGVIDAPLD----------G 185 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 +E + + H G++ L+ + P TGR HQ+R+H + HPI+ Sbjct: 186 KESQTSYLRLFHGGGVS-----------------LLAVYPITGRMHQIRQHFKMIGHPIL 228 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD ++G G G LH+ + +L HP TGE + I A L + M+ +S++ Sbjct: 229 GDKRYG-------GRALTGFTGHALHSFKTTLVHPATGEEVNIPAPLPEQLMRLVSRYSG 281 Query: 237 ---RGLLPENERVEFSAP 251 + LL +++ S P Sbjct: 282 VSEKALLDTLDQLPASGP 299 >UniRef50_A7ZDY2 Pseudouridine synthase n=4 Tax=Epsilonproteobacteria RepID=A7ZDY2_CAMC1 Length = 252 Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 38/205 (18%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ++++DE L+A+NKP+ EK+ QI + HRLD+ TSGVLL+ Sbjct: 60 VIFEDENLIAINKPAAI--------TSEKI-------SQIYKFPLL-HRLDKDTSGVLLL 103 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 + E L +F++ +++K Y A VRG + EE V++ P++ +K F++ K + Sbjct: 104 VKNDEFASLAINEFKKMKVEKIYVAAVRGIMSEEVVVNEPILTIKNK-NGAFSKISKDGK 162 Query: 124 PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD 183 A++ L V + LV++ KTGR HQ+R HLA L PI+GD K+G Sbjct: 163 EAISEISPLMVV-----------GKKTLVKVVIKTGRTHQIRVHLASLNLPIVGDEKYGK 211 Query: 184 LRQNRSGAEHFGLQRLMLHASQLSL 208 R N R+ LHA ++L Sbjct: 212 NRAN----------RMFLHAYSIAL 226 >UniRef50_C6BRU5 Pseudouridine synthase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BRU5_DESAD Length = 214 Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 114/226 (50%), Gaps = 34/226 (15%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTA-HRLDRPTSG 59 +L+I+Y D +V VNKPSG L ++ VV + + F A HRLD TSG Sbjct: 6 LLDIVYADRKIVVVNKPSGLLSVPGRGPENQDCVVTRVQKMFPECRKFPAVHRLDMDTSG 65 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARED 119 +L++GL++ A R L +QF++ Q++KRY A++ G + E++ V E+ D + R Sbjct: 66 LLVLGLTARAVRELMEQFQKRQVKKRYEALLEGIVKEDSG-----VIEMAFRLDPYNRPY 120 Query: 120 KGPQP-----AVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH---L 171 + P +TH+R L V G TR VE P TGR HQLR H AH L Sbjct: 121 QVYDPIHGKLGITHWRKLG-----VENG---MTR---VEFTPLTGRTHQLRVHSAHPQGL 169 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPL 217 PI+GD +G SG E +L LHA L HP T E + Sbjct: 170 GCPIVGDRLYG------SGTEP---GQLKLHAGYLCFEHPKTKEKM 206 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 116/252 (46%), Gaps = 36/252 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVH------------------RSWLDRDEKVVVMQTVRDQI 43 LEILY+DE L+ ++KP G +VH +S D +K + + Sbjct: 95 LEILYEDEDLIVISKPPGLVVHPAPGHSSGTLVNGLLFHFQSQGDEQKKGEPEEEEEAER 154 Query: 44 GQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDY 102 HRLD+ TSGV+++G + L QF+ + K+Y A+V+G L ++ ++ Sbjct: 155 PLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVSKKYLALVKGILPKKRGEINA 214 Query: 103 PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKH 162 P+ R+D +P+VT YR L T Y L+E+ TGR H Sbjct: 215 PIGRSTHDRKKFTVRQDG--KPSVTRYRVLETYH----------ENYSLLEVTLLTGRTH 262 Query: 163 QLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAG 222 Q+R H +L P++GD+ +G G E+ R MLHA +LS HP + + A Sbjct: 263 QIRVHFRYLGFPLLGDAVYGS-----KGTENKNFPRQMLHAWKLSFQHPSSNSKMEFEAP 317 Query: 223 LDDTWMQALSQF 234 L ++ AL + Sbjct: 318 LPPDFVSALERL 329 >UniRef50_C9RKF9 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKF9_FIBSS Length = 386 Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 38/224 (16%) Query: 2 LEILYQDEWLVAVNKPSGW-------------LVHRSW-LDRDEKVVVMQTVRDQIGQHV 47 L+++ Q E V VNKPSG LV W R+E + T+ Sbjct: 143 LDLVVQTEDYVIVNKPSGLASQPGSGTRPGESLVEYLWEWGRNEGLDFKPTI-------- 194 Query: 48 FTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVE 106 AHRLD+ TSG+++ L + R + +H + K Y A+V+G L ++ + L+ Sbjct: 195 --AHRLDQETSGLIIAALHGDTLRDFTRMIREHVVDKFYFALVKGNLKKDRGTISESLLR 252 Query: 107 ELDKIADKF--AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQL 164 K ++D+ Q A+THYR E Y LV+++ +TGR HQ+ Sbjct: 253 TDSAKGSKMLVGQDDENAQKAITHYRVKQHYEG-----------YDLVKIKLETGRMHQI 301 Query: 165 RRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSL 208 R H A + HP++GD+++GD NR + FGL RL LH+ +L Sbjct: 302 RAHFASIGHPLLGDTRYGDFALNREVKKLFGLNRLFLHSCRLEF 345 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 32/244 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVF------------T 49 ++++Y+D++L+ ++KP+G +V+ D T+ + + HV Sbjct: 82 IQVIYKDDYLIVLSKPAGMVVYPCAGHPD------GTLMNALAYHVKKLANVGAPFRPGI 135 Query: 50 AHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEEL- 108 HRLD+ TSGV+++ L E L + F++ +I+K Y A+V G L + P+ + Sbjct: 136 VHRLDKDTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYGQLRGSGKITTPVGRAIY 195 Query: 109 DKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHL 168 D+ K + + K + A+T + + + Y ++++ TGR HQ+R H Sbjct: 196 DR--KKMSIKSKKAKEAITEWEVIKNFK-----------NYTFLKVKILTGRTHQIRVHF 242 Query: 169 AHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 + + HP+IGD +G G + + R MLHA ++ L HP T + L A L D Sbjct: 243 SSIGHPVIGDKTYGRKTYIEIGNKKIPVSRQMLHAHKIELIHPITEKLLQFEASLPDDIQ 302 Query: 229 QALS 232 L+ Sbjct: 303 YILN 306 >UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales RepID=B7BE87_9PORP Length = 551 Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 110/238 (46%), Gaps = 39/238 (16%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI--GQHVFTAHRLDRPTSG 59 LEI+Y+DE L+ VNKP+G L D D V Q VR HRLD TSG Sbjct: 337 LEIVYEDESLLVVNKPAGMLSVPGKSDVDS---VYQRVRRMYPGATGPMVVHRLDMATSG 393 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFARE 118 ++L+ + E + L QF+ + KRY A + G + E E L+ PL + + + Sbjct: 394 LMLVAKTKEVHQNLQAQFKNRTVCKRYVAWLDGIVEEKEGHLELPLRPDPEDRPRQVVDV 453 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGL------VELEPKTGRKHQLRRHLAH-- 170 G +PAVT YR L RY + GL V PKTGR HQLR H AH Sbjct: 454 VHG-KPAVTDYRVL----------RYGGCKGGLRTTPTVVSFVPKTGRTHQLRVHSAHPL 502 Query: 171 -LRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTI--HAGLDD 225 L PI+GD +G RL LHA L THP +G + + AG DD Sbjct: 503 GLNAPIVGDELYGK-----------KADRLYLHAEYLGFTHPVSGVYMEVEKEAGFDD 549 >UniRef50_A6VZC6 Pseudouridine synthase n=2 Tax=Marinomonas RepID=A6VZC6_MARMS Length = 212 Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 24/214 (11%) Query: 2 LEILYQDEWLVAVNKPSGWL-VHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 LEILY+DEW +NKP+ L V D+ + ++ + + F HRLD TSG+ Sbjct: 9 LEILYEDEWFAVINKPANCLSVPGRGPDKLDSILYRA---ECLFGEAFAIHRLDEATSGL 65 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFARED 119 +L+ + E + + F + ++QK Y A++RG L+ E+ + PL + + D Sbjct: 66 ILVAKTHECQKRMYAHFREREVQKEYRALLRGHLLGEKGEVRKPLRCDWPNRPRQIICTD 125 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 + + ++T++ +A TTR V L P TGR HQLR H+ L H IIGD Sbjct: 126 EWSKDSITYWEKMAYENN--------TTR---VRLVPFTGRSHQLRVHMQSLGHSIIGDE 174 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFT 213 + QN RL+LHA +L HPFT Sbjct: 175 FYDPEFQNDP--------RLLLHAYRLEFRHPFT 200 >UniRef50_C0FY60 Pseudouridine synthase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FY60_9FIRM Length = 294 Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 23/220 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSW---LDRDEKVVVMQTVRDQIGQHVF------TAHR 52 L+++Y+D+ ++ +NKPSG L ++ + +E ++ + + + F +R Sbjct: 59 LQVVYEDDDVIIINKPSGMLSQKAVPEDISANEYILSYLIRKGALSEEQFKTFKPSICNR 118 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIA 112 LDR TSG+L+ G + + + +A+ ++ +QK Y IV+G L E+ L L ++ Sbjct: 119 LDRNTSGLLIAGKTLKGLQTMAEALKKRTVQKYYRCIVKGELREKTHLKGYLSKD----- 173 Query: 113 DKFAREDKGPQPAVTHYRGLATVE-MPVATGRYPT-TRYGLVELEPK--TGRKHQLRRHL 168 E V+H R + +P+ T P G ELE TGR HQ+R HL Sbjct: 174 -----EQNNKVKVVSHIRPEEKADYLPIETEYRPVAVSNGYTELEVHLITGRSHQIRAHL 228 Query: 169 AHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSL 208 A + HPI+GD K+GDLR N + ++ +LHA ++ L Sbjct: 229 ASIGHPIVGDGKYGDLRTNERFRKEVHVRSQLLHAYRIVL 268 >UniRef50_A9BWX6 Pseudouridine synthase n=2 Tax=Comamonadaceae RepID=A9BWX6_DELAS Length = 245 Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 24/229 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 + LY+D L+ ++KPSG L + + + + Q HRLD+ TSG++ Sbjct: 32 VSCLYEDAELLVLDKPSGLLCVPGRGPDKQDCLSGRAL--QRWPDALVVHRLDQATSGLV 89 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-----LDYPLVEELDKIADKFA 116 +M S + RLL++ F Q ++ K Y A+V G + +D P+ + ++ + Sbjct: 90 VMARSLASQRLLSEAFAQRRVHKLYVAVVAGRPAAQQADAWQSIDLPIAADWERRPLRII 149 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRY--PTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 +G +P+ T +R MP AT + PTTR V+L+P TGR HQLR H+A L H Sbjct: 150 DALQG-KPSQTLWRA-----MPAATEGHDTPTTR---VQLQPVTGRTHQLRVHMAALGHA 200 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 I+GD+ + D A RL+LHA QL L HP +G+ L + + Sbjct: 201 ILGDALYAD------AAVQALSPRLLLHAHQLELAHPLSGQTLRFESAV 243 >UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAM3_PHATR Length = 325 Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 23/235 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-----VMQTVRDQIGQHVFTAHRLDRP 56 L+I+++DE ++ +NK + +VH + + D VV + + I HRLD+ Sbjct: 73 LDIIFEDEHMIVINKAANMVVHPAAGNWDGTVVNALAYYLANRSESISFRPGIVHRLDKG 132 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPL------VEELDK 110 T+GVL++ +S+ L+ F Q++K Y AI G + V+D P+ + + Sbjct: 133 TTGVLVVAKTSQTLATLSNFFAARQVKKTYMAITVGNPGKHVVIDKPIGRHPLHRQRMRV 192 Query: 111 IADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 + D + G R L+ V+ G+ LV++ +TGR HQ+R HL Sbjct: 193 VPDPHQKNSTG-------RRALSYVDTLAFDGKL-----SLVQVRIETGRTHQIRVHLQD 240 Query: 171 LRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDD 225 PI GD +G N+ ++ + R +LHA +L + HP TGEP+ A L D Sbjct: 241 RHTPIYGDDIYGLADWNKKLSKTHRIVRPLLHAYKLEINHPVTGEPMVFKASLAD 295 >UniRef50_C0F0M1 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0F0M1_9FIRM Length = 306 Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 31/232 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLD-RDEKVVVMQTVRDQIGQ------HVFTAHRLD 54 L ILY+DE L+ V+KP+G + H S D + +Q + G+ ++ RLD Sbjct: 83 LHILYEDEDLIFVDKPAGIVSHPSKGHLSDSMINGVQAYFENEGREKNERSNIHLIGRLD 142 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVE-----ELD 109 + TSG+L + +S + +Q ++ + K Y+A+V+G EE +L+ P+ E + D Sbjct: 143 KETSGILGIAKNSVTAERMIKQRQRGILIKEYYALVKGNPPEEGILEIPMEEMRDARDGD 202 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 K+ K + + + A T ++ + E ++ LV L +TGR HQ+R H+A Sbjct: 203 KLKMKVGKSENA-KTAKTFFQVVKRFE-----------KFSLVSLVIETGRTHQIRFHMA 250 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 + P++GDS +GD G E G+ R LHA QL+ THPF + + I + Sbjct: 251 SIGCPLLGDSFYGD------GPE-LGISRTALHAQQLTFTHPFCEKVMRIES 295 >UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BL50_9LACT Length = 296 Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 110/230 (47%), Gaps = 30/230 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-----VMQTVRDQ-IGQHVFTAHRLDR 55 L+IL++D++L+ VNKP G S L D+ + +QT R Q HV T RLDR Sbjct: 77 LDILFEDDYLLIVNKPQGTASIPSQLHPDQSMANRVKGYLQTTRTQDCVTHVVT--RLDR 134 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIV--RGWLMEEAVLDYPLVEELDKIAD 113 T+GV++ + Q IQK YHAIV + L E ++D P+ D I + Sbjct: 135 DTTGVMMFAKHRVVHAWMDQALRNKTIQKTYHAIVTKQDVLKEHDLIDAPIGRTDDSIIN 194 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + R D +P++T Y T + LV++ TGR HQ+R H + L Sbjct: 195 RCVRPDG--KPSLTEYWLEETYQ-----------HSQLVKIRLHTGRTHQIRVHFSWLGC 241 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 P++GD +G G + L R LH SQL HP TGE + + A L Sbjct: 242 PLLGDDLYG-------GEKIEPLMRQALHCSQLDFVHPMTGEKMCVKALL 284 >UniRef50_D1RB93 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB93_9CHLA Length = 283 Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 111/229 (48%), Gaps = 20/229 (8%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D LV + KP+G L + D+ + R + + V+ HRLD+ TSGV+L Sbjct: 70 ILYEDAHLVVIEKPAGLLSVATNFDKAKTAHAFLKERYR-PRKVYVVHRLDQDTSGVMLF 128 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAREDKGP 122 L+ EA L F H I + Y A+V G + +E L E+ + DKG Sbjct: 129 ALTGEAFFGLKALFADHDIDREYTAVVHGKMTQQEGTWQSYLYEDKAYVVHSTQDPDKG- 187 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + A+TH++ TVE T + L+ L+ +TG+K+Q+R H PI+GD K+G Sbjct: 188 ELAITHFK---TVE--------ARTHFSLLNLKLETGKKNQIRVHCEDHGFPIVGDKKYG 236 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 G H +RL LHA L HP + ++ + + + + Q L Sbjct: 237 G-----EGESHI-TKRLCLHAHHLGFVHPIYKKEMSFDSPIPEKFYQCL 279 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 96.3 bits (238), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 22/239 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQH----VFTAHRLDR 55 L+ILY+D ++ +NK G +VH + +V ++ +D G + HRLD+ Sbjct: 80 LDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYHCKDLSGINGEIRPGIVHRLDK 139 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSGV++ + A LA+Q + Y AIV G + EEA + + K Sbjct: 140 DTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCGNIREEAGVIKGDIGRHPTDRKKM 199 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A + +PAVTH+R L R+ Y LVE +TGR HQ+R H+A + HP+ Sbjct: 200 AIVHEHGKPAVTHFRVLE---------RFGA--YTLVECRLETGRTHQIRVHMASIGHPV 248 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +GD K+G + A F ++ LH+ QL+LTHP T E +T A L + + L Sbjct: 249 LGDPKYGPRK-----ACPFAIKGQALHSLQLTLTHPRTREVMTFTAPLPEDMEKILKAL 302 >UniRef50_B1VEM5 Pseudouridine synthase n=3 Tax=Corynebacterium RepID=B1VEM5_CORU7 Length = 313 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 15/226 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+++D+ L+ VNKP+ VH + + ++ +R + + + AHRLD+ TSG+L++ Sbjct: 96 IVFEDDDLLIVNKPANIAVHVGSGVKAGVIEALRVLRPE-DKELELAHRLDKETSGLLIV 154 Query: 64 GLSSEAGRLLAQQFEQ--HQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 +S+ R L + IQ+ Y A+ G L + + L K + + Sbjct: 155 AKNSKMLRHLQSLLREGGEDIQRYYLAVAGGVLKKSGKQARRIDAPLRKTGAATVVDRRA 214 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A T V+ P GR T LVE++ TGRKHQ+R HL HL HPIIGDS++ Sbjct: 215 GQQAETKL----WVKKP--WGRAGT----LVEVQLLTGRKHQIRVHLQHLGHPIIGDSRY 264 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 GD N++ AE G++ LMLHAS+L + P +GE L + A + W Sbjct: 265 GDKAANQAAAEK-GVRMLMLHASRLVIPLP-SGEELDVQAPMPPAW 308 >UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae RepID=A5INM9_THEP1 Length = 304 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 40/238 (16%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-------GQHVFTAHRLD 54 L++LY+ + + +NKP +H K V + T+ + + G F HRLD Sbjct: 85 LDVLYEGKHYLVLNKPPNIAIHPG------KGVHVATLIEGLLHYGQEKGFSPFLVHRLD 138 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADK 114 + TSG+L++ EA R+L + F+ I+K Y +VRG + PL Sbjct: 139 KDTSGLLVVAKDREAARILTELFKDRNIEKEYVTLVRGTPENNMKITIPL---------- 188 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 Q A++ + ++ L+ ++ TGRKHQ+RRHL+ + P Sbjct: 189 ------DGQEAISEIVSVKSLR-----------DVSLLRVKIHTGRKHQIRRHLSQIGFP 231 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 ++GD +GD NR + +GL+RL LH+ ++ P+T E A L D + L+ Sbjct: 232 VVGDDTYGDRHFNREFRKRYGLKRLFLHSYRMKFIDPWTEEEKDFRAPLPDDLLSVLN 289 >UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT n=5 Tax=Bacillus RepID=YHCT_BACSU Length = 302 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 23/224 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+IL++D ++ +NKP+G H + + + + QI V HRLD+ TS Sbjct: 83 LDILFEDNHMLIINKPAGIATHPNEDGQTGTLANLIAYHYQINGETCKVRHVHRLDQDTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G ++ A +L QQ E+ +++ Y AI G L ++ ++ P+ D+ R Sbjct: 143 GAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKLRTKKGTINSPIGR--DRSHPTRRR 200 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 G Q AVTH++ +A+ R LVELE +TGR HQ+R HLA L HP+ G Sbjct: 201 VSPGGQTAVTHFKVMAS---------NAKERLSLVELELETGRTHQIRVHLASLGHPLTG 251 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 DS +G G L R LHA+++ HP T E + A Sbjct: 252 DSLYG-------GGSKL-LNRQALHANKVQAVHPITDELIVAEA 287 >UniRef50_C7MES4 Pseudouridine synthase, RluA family n=5 Tax=Actinomycetales RepID=C7MES4_BRAFD Length = 318 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 113/230 (49%), Gaps = 21/230 (9%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMG 64 L++DE L+ ++KP+G VHR + ++ +R ++ + HRLDR TSGVL + Sbjct: 103 LHEDEDLLIIDKPAGVAVHRGTDVPAGVIDALRQLRPEL-PDLELIHRLDRSTSGVLALA 161 Query: 65 LSSEAGRLLAQQFE--QHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKG 121 S R L + +I++RY A+V G W E +LD PL E +++ D Sbjct: 162 KSPSMLRYLHDLLRDREDEIERRYLALVAGHWPAETTILDAPLRREENRVV-----VDPD 216 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A TH VA + R L+E+ TGRKHQ+R HL H HPI GD ++ Sbjct: 217 GQRAETH----------VAVAQRFGNRATLLEVRLLTGRKHQIRVHLQHAGHPIAGDDRY 266 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 GD NR A G L LHA++L + P G L + A W Q L Sbjct: 267 GDDAFNRRAAS-LGGTGLHLHAAELVIPRP-DGTTLAVTAPTPRRWEQLL 314 >UniRef50_C8W9Q3 Pseudouridine synthase n=2 Tax=Atopobium RepID=C8W9Q3_ATOPD Length = 246 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 23/244 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDR-------DEKVVVMQTVRDQIGQHVFTAHRLD 54 LE LYQD++L+AVNKP+G +VH + EK+ +++ V +RLD Sbjct: 10 LEFLYQDDYLLAVNKPAGMIVHSDGTNEPSLTDLVCEKLCALESSNKIDLSQVQALNRLD 69 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIAD 113 + T+G++L L E Q ++ K Y A+V+G + + + ++D + ++ A Sbjct: 70 KETTGIVLFSLKKETQPQFDQLIASKELSKEYLAVVKGDFGLNKLLIDKAIGKDRHD-AQ 128 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K D G +P+ T R + A G+ + L+ + TGRKHQ+R HL+ L Sbjct: 129 KMRISDTG-KPSQTEVRLIKVASS--AQGQIQS----LLLVNLLTGRKHQIRVHLSSLGF 181 Query: 174 PIIGDSKHGDLR--QNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 P++GD +G + Q ++ +H Q LMLHA ++ HP TG + I + + + Sbjct: 182 PLVGDVLYGGMSSLQRKTKKKHRP-QPLMLHAYRIGFIHPVTGAKIVIKTDIPERF---- 236 Query: 232 SQFG 235 S FG Sbjct: 237 SNFG 240 >UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii RepID=B6J6C4_COXB1 Length = 327 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 48/244 (19%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD---QIGQHVFTAHRLDRPTS 58 L+++Y+DE L+ +NKP G +VH RD+ ++ D + HRLD+ TS Sbjct: 89 LDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLHYDPSLSVVPRAGIIHRLDKDTS 148 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPL----VEELDKIADK 114 G+LL+ + + L + + QI + Y AIV+G L+ ++ P+ + + Sbjct: 149 GLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLISGRTIEAPVGRHPIHRTRMAVVE 208 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 F R PA+TH+R + RY + V+LE TGR HQ+R H+AH+ HP Sbjct: 209 FGR------PAITHFRIIK---------RYRAHTHIRVQLE--TGRTHQIRVHMAHIHHP 251 Query: 175 IIGDSKHGDLRQNRSGAEHFG---------------LQRLMLHASQLSLTHPFTGEPLTI 219 + GD +G H G L+R LH + L +HP P+ Sbjct: 252 LAGDPVYGS---------HVGIPVHLSDPLQTALKTLKRQALHGATLQFSHPVDQRPMAC 302 Query: 220 HAGL 223 HA L Sbjct: 303 HAPL 306 >UniRef50_Q6MM51 Ribosomal large subunit pseudouridine synthase C n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MM51_BDEBA Length = 231 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 112/232 (48%), Gaps = 28/232 (12%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDR---DEKVVVMQTVRDQIGQHVFTA--HRLDR 55 M+EIL++DE+ +A KP+G + ++ +D+ D + +R++ G + A HRLDR Sbjct: 1 MIEILFEDEFFLAAAKPAG-MPSQATVDKSRQDFFTALKNQLRNERGDAFYLALHHRLDR 59 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV--LDYPLVEELDK--I 111 TSGV++ + EA LA F+ H+IQK Y + + +D LVE D Sbjct: 60 DTSGVMIFAKTKEANEPLADLFKTHKIQKTYLCLTKRTQKAADAWEVDNHLVEMKDTKLK 119 Query: 112 ADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 K R G A T +R L P A L+E +P TGR HQ+R HLA Sbjct: 120 KTKMVRTQSGGDRAYTKFRKLEV--FPEAL---------LIEAQPLTGRMHQIRVHLADR 168 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 I GD D+ Q ++ RLMLHA L THPFT E + I + Sbjct: 169 GMGIYGD----DIYQ---APKNPVAPRLMLHAHALEFTHPFTKEFVRIECAV 213 >UniRef50_Q2SK59 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q2SK59_HAHCH Length = 315 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 14/208 (6%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMG 64 L++++ L+ +NKP G VH + +++ R I + + AHRLDR TSGVL++ Sbjct: 100 LFENDELLIINKPCGVAVHGGSGVSFGVIEILRAARQDI-RFLELAHRLDRDTSGVLVLA 158 Query: 65 LSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 A + +++K YHA V G W ++V+ PL + + + ++ + + Sbjct: 159 KKRRALVQFHDMLKTGRVEKIYHAWVCGKWPKHKSVITAPLKKNVLRSGERMVNVSEDGK 218 Query: 124 PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD 183 P+ T +R L Y LVE +P TGR HQ+R H HPIIGD K+ D Sbjct: 219 PSETRFRVL-----------YSGAGRTLVEAQPITGRTHQIRVHAKFAGHPIIGDDKYCD 267 Query: 184 LRQNRSGAEHFGLQRLMLHASQLSLTHP 211 NR G++RL LHA L ++ P Sbjct: 268 SETNRV-YRDMGVKRLCLHAYSLRMSWP 294 >UniRef50_B9XS18 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS18_9BACT Length = 536 Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 32/223 (14%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 IL++DE L+ VNKP+G H E + R+ + HRLD+ TSGV++ Sbjct: 12 ILFEDEHLLVVNKPAGMNTHAPSPYAGEGIYEWLKHREPRWASLAIVHRLDKETSGVMVF 71 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLD---YPLVEELDKIADKFARED- 119 G ++ A R L +QF H I+K+Y L+ + V+ +V L ++ +K+ Sbjct: 72 GKTTVANRSLTEQFTNHSIRKKY------LLLTDKVVSSQTSTMVSCLVRVGEKYLSRPV 125 Query: 120 -KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 G + A TH+ + E LVE EP TGR HQ+R H A PI+GD Sbjct: 126 HAGGEKAETHFEVITKAEGGT-----------LVEAEPITGRTHQIRVHAAEQGFPILGD 174 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 + +G + + R+ LHA++L L HP T +T A Sbjct: 175 ALYGGTKAS----------RVCLHAAELKLKHPGTNAEMTFRA 207 >UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus RepID=C0MA80_STRE4 Length = 300 Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 28/219 (12%) Query: 2 LEILYQDEWLVAVNKPSGWL-----VHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRP 56 L+I+Y+DE + +NKP+G+ +H + + K ++ +D + V RLDR Sbjct: 76 LDIVYEDEHFLILNKPAGYASIPSAIHSNTIANFIKAYYIK--QDYPNKQVHIVTRLDRD 133 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW--LMEEAVLDYPLVEELDKIADK 114 TSG++L A L +Q +Q I KRY+A+V G L ++ + P+ D I + Sbjct: 134 TSGLMLFAKHGYAHARLDKQLQQRAINKRYYALVCGQERLPDQGEIIAPIGRTDDSIITR 193 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 KG + A T Y+ +A RYP LV++ TGR HQ+R H AHL P Sbjct: 194 TVTP-KG-KYAKTSYKVIA---------RYPEN-VSLVDITLHTGRTHQIRVHFAHLGFP 241 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFT 213 ++GD +G G G+ R LH LS THPFT Sbjct: 242 LLGDDLYG-------GRLDLGMTRQALHCHHLSFTHPFT 273 >UniRef50_B0JGC2 Pseudouridine synthase n=2 Tax=Microcystis aeruginosa RepID=B0JGC2_MICAN Length = 501 Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 26/220 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEI+Y+DE ++A+NKP+G L+ + +D + V+ R Q G+++ HRLDR TSG+L Sbjct: 300 LEIIYEDEGIIAINKPAG-LLSVAGRYQDSQDAVVNRFRRQ-GKNLIPVHRLDRETSGIL 357 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFAREDK 120 L+ S + R L+QQF++ +++K Y AI+ + E+ ++D PL + Sbjct: 358 LLAKSLDIYRCLSQQFQRREVEKIYEAILSEIIERESGIIDLPL----------WGNPQN 407 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH-LRHPIIGDS 179 P V RG A+ G+ Y +E P TGR HQ+R H L I+GD Sbjct: 408 RPYQTVDWQRGKASQTYFKVVGK--EGNYSRLEFIPYTGRTHQIRVHSQQGLGIGILGDR 465 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTI 219 + + + RL LHA QLS HP T L + Sbjct: 466 LYNGKQSD----------RLHLHAKQLSFRHPQTENKLDL 495 >UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium thermophilum RepID=Q67N67_SYMTH Length = 327 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 123/257 (47%), Gaps = 60/257 (23%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTA---------HR 52 ++++Y+D WL+ V+KP+G +VH RD V T+ + + H+ + R Sbjct: 74 IQVVYEDPWLLVVDKPAGMVVHPV---RD---YVSGTLANAVAHHLLRSGSDPVARPVQR 127 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRY----------------HAIVRGW--L 94 +DR TSG++L LLA++ E+ ++++RY I R W Sbjct: 128 IDRETSGLVLFAKDPAVAGLLARELERQKLERRYVAVVEGAVAADAGTVDRPIRRVWGHP 187 Query: 95 MEEAVLDYPLVEELDKIADKFA------RED--KGPQPAVTHYRGLATVEMPVATGRYPT 146 + V + P E +++ + A RED QPAVTH+R L P AT Sbjct: 188 VAREVAEGPRTPEQERLLAEAAAQGRALREDWTAAGQPAVTHWRVLR--RWPAAT----- 240 Query: 147 TRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQL 206 ++EL +TGR HQ+R H+A+L HP++GD +G R +QR LHA+ L Sbjct: 241 ----MLELRLETGRTHQIRVHMAYLGHPLLGDELYGGSRTL--------IQRQALHAATL 288 Query: 207 SLTHPFTGEPLTIHAGL 223 + HP T EP+ A L Sbjct: 289 AFVHPVTREPVRFTAPL 305 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 112/240 (46%), Gaps = 22/240 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV---FTAHRLDRPTS 58 L ILY D+ ++ +NKP+G +VH + + D ++ +H+ HRLD+ TS Sbjct: 86 LNILYADDDIIVINKPAGLVVHPAVGNHDNTLLNALLYHFPQTKHLPRSGIVHRLDKDTS 145 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G +++ S+ A L +Q + + + Y A+V G++ +D P+ R Sbjct: 146 GAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITAGDTIDLPIGRHAKDRLKMAVRP 205 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D +PA+THYR R+ T V+LE TGR HQ+R HL+H RHP++GD Sbjct: 206 DG--KPAITHYR---------IEERWQTLTLLRVQLE--TGRTHQIRVHLSHHRHPLVGD 252 Query: 179 SKHGDLRQNRSGAEHFGLQ------RLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G S Q R LHA +L L HP T E + A L D Q + Sbjct: 253 KLYGARPFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFTAPLPDDMTQLFT 312 >UniRef50_A4ANB8 Pseudouridine synthase n=3 Tax=Flavobacteriales RepID=A4ANB8_9FLAO Length = 308 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 107/227 (47%), Gaps = 40/227 (17%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT--AHRLDRPTSG 59 L++LY+DE L A++KPSG LV + + + HRLD T+G Sbjct: 104 LKMLYEDEHLAAIHKPSGILVSGNSFKTITHALSQNLEPSNLPDSTLPQPVHRLDYATTG 163 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARED 119 +LL+G +S R L FE+ +I+K Y+AI G + E KI +K A+ Sbjct: 164 ILLIGKTSSVIRALNGMFERKEIKKTYYAITMGKMEIRG-------EVTLKIDNKNAQSK 216 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYG---LVELEPKTGRKHQLRRHLAHLRHPII 176 VE V P+ R+G LV+L P TGR+HQLR H++ + +PI+ Sbjct: 217 -------------YVVEETV-----PSERFGQLNLVKLTPITGRRHQLRIHMSGIGNPIL 258 Query: 177 GDSKHG--DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 GDS +G DL G L LHA + HP+T E L I + Sbjct: 259 GDSDYGTKDLILKGKG--------LYLHAYSIEFNHPYTNEKLLIKS 297 >UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB48_PLALI Length = 325 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 24/245 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-VMQTVRDQIGQHVF-----TAHRLDR 55 LEIL++D+ L+ +NKP+G + H + D ++ +Q D+ H HRLDR Sbjct: 82 LEILFEDDSLLVINKPAGLIAHPTGEIPDGTLINAVQHYLDKQSTHPGLERPGIVHRLDR 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADK 114 TSG + + + RLL+ QF+ +I K Y A+V G L ++ V+D P + + Sbjct: 142 DTSGAMAICKEHLSHRLLSIQFQLGRISKSYLALVEGVLTDDQLVIDLP-IGRAPGCSSA 200 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A L VE R+P ++ LVE +P+TGR HQ+R HLA + P Sbjct: 201 LMSCRADALEAQASKTSLRVVE------RFP--QHTLVEAKPRTGRMHQIRIHLATIGFP 252 Query: 175 IIGDS---KHGDLR-----QNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 I+GD K G++R ++ + R LHA+ LS HP T E A L D Sbjct: 253 IVGDEFYLKGGEIRPLVWPESERVQVSLLINRQALHAACLSFAHPLTNEWQDFQAPLPDD 312 Query: 227 WMQAL 231 QA+ Sbjct: 313 LRQAI 317 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 31/257 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHR---SWLDRDEKVVVMQTVRDQIG----QHVFTAHRLD 54 L+ILY+D+ ++ +NKP+G +VH +W ++ G + HRLD Sbjct: 81 LDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGGVKRPGVVHRLD 140 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQH----QIQKRYHAIVRG------WLMEEAVLDYPL 104 + TSGV+++ + A + L+ QF H + +RYHA++ G W ++ ++ P Sbjct: 141 KNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALDRRYHALIWGTPHRNVWTIDASLGRSPH 200 Query: 105 VEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQL 164 + K + + AVTH+ L T T+ L+E +TGR HQ+ Sbjct: 201 NRTKQAVVHK---QTPHARHAVTHFSLLEKY----GTHADSTSFASLLECRLETGRTHQI 253 Query: 165 RRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQ-------RLMLHASQLSLTHPFTGEPL 217 R H+AH+ HP+IGD+ +G+ + +S + L+ R LHA+ L+ HP +G+ + Sbjct: 254 RVHMAHIGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQFNRHALHAASLTFEHPSSGKVI 313 Query: 218 TIHAGLDDTWMQALSQF 234 + A L Q + Sbjct: 314 SFSAPLPQDMAQLIKHL 330 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 117/252 (46%), Gaps = 36/252 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVH------------------RSWLDRDEKVVVMQTVRDQI 43 LEILY+D+ L+ ++KP G +VH +S D +K + + Sbjct: 95 LEILYEDDDLIVISKPPGLVVHPAPGHASGTLVNGLLFHFQSQGDEQKKGEPEEEEEAER 154 Query: 44 GQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDY 102 HRLD+ TSGV+++G S L QF+ + K+Y A+V+G L ++ ++ Sbjct: 155 PLRAGLVHRLDQDTSGVMVVGKSETVVLDLMNQFKDRSVSKKYLALVKGILPKKRGEINA 214 Query: 103 PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKH 162 P+ KFA G +P++T YR L T Y L+E+ TGR H Sbjct: 215 PIGRSTHD-RKKFAVRQDG-KPSLTRYRVLETYH----------ENYSLLEVTLLTGRTH 262 Query: 163 QLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAG 222 Q+R H HL P++GD+ +G G E+ R MLHA +L+ HP + + A Sbjct: 263 QIRVHFRHLGFPLLGDAVYGS-----KGMENRNFPRQMLHAWKLAFQHPRSAAKMEFEAP 317 Query: 223 LDDTWMQALSQF 234 L ++ A+ + Sbjct: 318 LPPDFVSAMKRL 329 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 122/241 (50%), Gaps = 25/241 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQH----VFTAHRLDR 55 ++ILY+D + ++K +G +VH S +V VM ++D G + HRLD+ Sbjct: 77 IKILYEDSDIAVIDKEAGIVVHPSHGHESGTLVNAVMYHIKDLSGINGEIRPGIVHRLDK 136 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG+L++ + A L++ F I+K Y AI++G + +E+ L+ K K Sbjct: 137 DTSGLLIIAKNDTAHLRLSEMFGSSGIRKTYIAILKGKINKESGKLETLIGRDPKDRKKM 196 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A + A+T+++ L E ++ LV++ +TGR HQ+R H+ +L +P+ Sbjct: 197 AVVKTNGKTAITYFQVLDKNE-----------KFSLVKVNIQTGRTHQIRVHMKYLGYPV 245 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GDS +G R N+ R MLHA +L HP T + + I + L + +AL + G Sbjct: 246 LGDSVYG--RDNKIAG------RQMLHAYKLEFLHPVTQKAMKIISELPQDFEKALKETG 297 Query: 236 W 236 Sbjct: 298 L 298 >UniRef50_A4CLQ5 Pseudouridine synthase n=16 Tax=Bacteria RepID=A4CLQ5_9FLAO Length = 236 Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 32/244 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH------VF--TAHRL 53 L +LY+D L+AV+K +G +V D+ + +TV+D I VF HRL Sbjct: 11 LMVLYEDNHLIAVSKRAGDIVQG---DKTGDTPLPETVKDYIAHKYQKPGKVFLGVVHRL 67 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIAD 113 DRPT+GV++ +S+A + + F + +K Y A+V E A +E K Sbjct: 68 DRPTTGVIVFARTSKALSRMNRLFAEGGTRKTYWALVGTPPPETAGRLVHWLERNQKQNK 127 Query: 114 KFAR--EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 +AR E G + A+ +YR L +++ RY L+E++ +TGR HQ+R LA + Sbjct: 128 SYARAKEVPGSKQAILNYRLLGSLD-----------RYHLLEIDLETGRHHQIRAQLAAI 176 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL-DDTWMQA 230 PI GD K+G R N G H LHA +L HP +P++I A L DD +A Sbjct: 177 GSPIKGDLKYGFPRSNPDGGIH-------LHARRLEFIHPVRQDPVSILAPLPDDPLWEA 229 Query: 231 LSQF 234 + Sbjct: 230 CGKL 233 >UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID=B7HGW1_BACC4 Length = 297 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 43/243 (17%) Query: 2 LEILYQDEWLVAVNK------------PSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT 49 L I+Y+D+ ++ +NK P+G V + L +K + TV H+ T Sbjct: 82 LCIIYEDDAVLIINKEANMSTIPSREHPAGS-VANALLSHYDKQHLASTV------HIVT 134 Query: 50 AHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEEL 108 RLDR TSG++L+ + LL++Q +Q +++ Y AIV G ++E E ++D P+ + Sbjct: 135 --RLDRDTSGLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHGKIVEREGMIDAPIGRKS 192 Query: 109 DKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHL 168 D I ++ ED Q AVTH++ V Y T V LE +TGR HQ+R H+ Sbjct: 193 DSIIERTVCED--GQRAVTHFK--------VIDSTYHKTH---VALELETGRTHQIRVHM 239 Query: 169 AHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 AH+ HP++GDS +G R ++R LH+ L+ HP + ++ L Sbjct: 240 AHVGHPLLGDSLYGGRRDE--------MKRQALHSKSLTFYHPILEKEMSFTIKLPSDMQ 291 Query: 229 QAL 231 + L Sbjct: 292 EVL 294 >UniRef50_C4GB89 Pseudouridine synthase n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GB89_9FIRM Length = 337 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 24/218 (11%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSW---LDRDEKVVVMQTVRDQIGQ------HVFTAHRLD 54 ++Y+DE ++A++KP+G L R+ + +E+++ + + + H A+RLD Sbjct: 94 VIYEDEDILALDKPAGCLSQRAGQKDISLNEEMLAYLIAKGALTRESYFLFHPSVANRLD 153 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDK---- 110 R TSG++L G + + L++Q + K YH IVRG L EE LD L +++ + Sbjct: 154 RNTSGLILAGKTLRGQQYLSEQLRDRSVIKLYHTIVRGRLTEELQLDGYLYKDVGRNQVL 213 Query: 111 IADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 +++K +G Q T YR P+ + T L+E+ TGR HQ+R HLA Sbjct: 214 VSEKKEDLPEGAQEIHTAYR-------PLDHRKDLT----LLEVHLMTGRSHQIRAHLAS 262 Query: 171 LRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSL 208 + HPI GD K+GD N+ +G++ +LH+ + L Sbjct: 263 IGHPIAGDPKYGDFHWNQILRRKYGVRGQLLHSYSIKL 300 >UniRef50_D1B0V0 Pseudouridine synthase n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B0V0_SULD5 Length = 302 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 27/233 (11%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMG 64 +++ E +KPSG ++H R + + ++ G+ AHR+D+ TSG++L+G Sbjct: 73 IFETEDFAVFDKPSGVMIHPR--KRSDGYTLNDEIKSLYGKDANAAHRIDKSTSGLVLVG 130 Query: 65 LSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELD--KIADKFAREDKGP 122 ++ L + F ++QK Y A+V+G L EE ++D L +++ +I K +++G Sbjct: 131 KHKQSEIALKEIFATRKVQKSYIALVKGHLKEELLIDEKLKRDVETSQIRLKVHVDERG- 189 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 +P+ T L E AT LV+ P TGR+HQ+R HL H++HPI+GD +G Sbjct: 190 KPSQTKVIPLHYFEDKDAT---------LVQAFPYTGRQHQIRVHLFHVKHPIVGDMIYG 240 Query: 183 ----DLRQNRSGA-------EHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 D + G+ E RL+LHA LS F G TI + +D Sbjct: 241 VEEEDAERYLDGSMSAEEQYEKTLSSRLLLHAYSLSFN--FKGVDYTIESTID 291 >UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR26_9FIRM Length = 301 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 117/229 (51%), Gaps = 32/229 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV---VMQTVRDQIGQHVF-TAHRLDRPT 57 L I+Y+D++L+ VNKP+G LVH + D E + ++ + + F HRLDR T Sbjct: 75 LHIVYEDDFLLIVNKPAGLLVHPTS-DPTEPTLAHGILYYLHSKGALGAFHPIHRLDRNT 133 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW---LMEEAVLDYPLVEELDKIADK 114 SG++ + L+ + +++ Y A+V G LM +D P+ + I + Sbjct: 134 SGLVAIAKHPHIQHALSGGGAK-GLKRLYLAVVTGIPSSLMGR--IDAPIGRHPNSIIKR 190 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 R D QPA+T YR L+T M LVELE TGR HQ+R HL+H+ HP Sbjct: 191 VVRSDG--QPAITLYRVLSTFSM-----------ASLVELELLTGRTHQIRVHLSHIGHP 237 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 ++GD +G GA ++R LHA+ LS HP T + LT+ + L Sbjct: 238 LLGDDLYG-------GATDL-IRRQALHAASLSFRHPATDKVLTLTSPL 278 >UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q0BWH2_HYPNA Length = 341 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 114/252 (45%), Gaps = 34/252 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG-----QHVFTAHRLD 54 LEIL++D LV +NK +G VH + + +V ++ + Q+ + HRLD Sbjct: 81 LEILFEDAHLVILNKAAGMAVHPAPGSQTGTLVNALLHHCQGQLSGIGGVERPGIVHRLD 140 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW------LMEEAVLDYPLVEEL 108 + TSGV++ + A LA FE+H I + Y A+ RG +E A+ E Sbjct: 141 KLTSGVMVAAKTESAHTGLAALFERHDIDRVYRAVTRGAPRPLSGTIEAAIAR----SES 196 Query: 109 DKIADKFAREDKGPQP--AVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRR 166 D+ R P AVTHY+ + T R P L+E +TGR HQ+R Sbjct: 197 DRKKMSVHRNPDSPAARHAVTHYKAVETFGYKDRATRLPAA--ALLECRLETGRTHQIRV 254 Query: 167 HLAHLRHPIIGDSKHG-------------DLRQNRSGAEHFGLQRLMLHASQLSLTHPFT 213 H+AH P+IGD +G + R +++ A R LHA+ L HP T Sbjct: 255 HMAHSGAPLIGDPVYGRQAGIMAWKAPGSEARYDKALAAARAFSRQALHAAVLGFVHPIT 314 Query: 214 GEPLTIHAGLDD 225 GE L A L + Sbjct: 315 GETLRYEAPLPE 326 >UniRef50_Q0BUM2 Pseudouridine synthase n=12 Tax=Acetobacteraceae RepID=Q0BUM2_GRABC Length = 366 Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 85/267 (31%), Positives = 124/267 (46%), Gaps = 38/267 (14%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D+ L+ +NKPSG ++ +R HRLDR TSGV+++ Sbjct: 125 ILYKDDHLIVLNKPSGLPSQGGPGITRHLDGLLDGLRFGRDDRPRLVHRLDRDTSGVIVI 184 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDK-----IADKFAR 117 S LA F + +K Y A+V G + E +D PL+ + D+ +AD R Sbjct: 185 ARSPGVAAKLAALFRTRETEKVYWAVVAGRPVPVEGRIDRPLLRQNDRNEPVVLAD---R 241 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 +D+ A+T YR L + + +EL P TGR HQLR H A + PI+G Sbjct: 242 KDRDKVTAITDYRTLD----------HAARKLAWLELRPLTGRMHQLRVHCAAMDAPILG 291 Query: 178 DSKHG-----DLRQNRSGAEHFGL-QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 D ++G D R R+ A GL +RL LHA +LSL HP G L++ A L + Sbjct: 292 DERYGSWRNTDERGVRNTALVEGLSRRLHLHARRLSLPHPAGGM-LSVEADLSPHMAETF 350 Query: 232 SQFGWRGLLPENERVEFSAPSGQDGEI 258 G F+AP ++G + Sbjct: 351 ETLG------------FTAPKAREGRL 365 >UniRef50_C5BU65 Pseudouridine synthase for 23S rRNA and tRNAphe n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU65_TERTT Length = 208 Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 108/225 (48%), Gaps = 23/225 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L I+YQD+ ++A+NKP+G L D Q V V HRLD TSG++ Sbjct: 4 LAIIYQDDHIIAINKPAGLLTVPGLATPDN--AFDQLVHQHPNSRV--VHRLDMATSGLV 59 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAREDK 120 + S E+ + FEQ ++ K Y A V G + E+ + PL+ + + ++ Sbjct: 60 IFPQSHESLVRFGRLFEQRKMTKTYTATVAGIVAEDRGEITLPLICDWPNRPKQKVDLEQ 119 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 G A T Y+ L + + T R +EL P TGR HQLR H+ L HPI+GD+ Sbjct: 120 GKH-AHTQYKVLER-RLDLQTTR--------IELTPITGRSHQLRVHMQQLGHPILGDAF 169 Query: 181 HG-DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 + D Q S RL+LHA+ L HPFT P +IH D Sbjct: 170 YAPDAIQQASD-------RLLLHATTLEFVHPFTQCPTSIHCEPD 207 >UniRef50_Q5E092 Pseudouridine synthase n=3 Tax=Aliivibrio RepID=Q5E092_VIBF1 Length = 576 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 30/228 (13%) Query: 2 LEILYQDEWLVAVNKPSGWL-VHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 LEI+Y+D+ LV VNKP +L V ++ + + G + HRLD TSG+ Sbjct: 373 LEIVYEDDVLVIVNKPVEFLSVSGKYISDSVHARIQARYPNATGPLI--VHRLDMSTSGL 430 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFARED 119 L++ L++E+ + + +QF + ++KRY A++ G + + ++ PL +++ + Sbjct: 431 LVLTLTAESNKQVQKQFIERTVEKRYTALLEGNIETDNGTINLPLTGDMEDRPRQMVNHK 490 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH---LRHPII 176 G + A THY+ +A + V L P TGR HQLR H AH L PI+ Sbjct: 491 SG-RKAETHYQVIAQ-----------EGKRTKVHLYPHTGRTHQLRVHCAHQAGLNTPIV 538 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 GD +G F RL LHA L HP T E + D Sbjct: 539 GDDLYG-----------FKADRLHLHAGYLKFKHPTTNETVEFSCPED 575 >UniRef50_C0M8E2 Pseudouridine synthase n=3 Tax=Streptococcus equi RepID=C0M8E2_STRE4 Length = 301 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 104/221 (47%), Gaps = 24/221 (10%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 +++ LYQDE L+ VNKP G H + ++ ++ V G+ + HRLD TSG Sbjct: 92 LVDCLYQDEHLIIVNKPEGMKTHG---NEPTELALLNHVSAYTGKTCYVVHRLDMETSGA 148 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 +L + +L + E I++ Y A++ G L ++ V + K + K Sbjct: 149 ILFAKNPFILPILNRLLEHRDIKRDYWALIEGQLEQQTVTYRDPIGRHRHDRRKRVVDSK 208 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 Q A+TH L + LV +TGR HQ+R HLAH +HP+IGD Sbjct: 209 HGQEAITHLALLQAFDQTC-----------LVNCRLETGRTHQIRVHLAHHKHPLIGDPL 257 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 + +R AE RLMLHA QL+L HP E + + A Sbjct: 258 Y-----SRQKAE-----RLMLHAHQLTLRHPLAQEMIRVTA 288 >UniRef50_A5WCP4 Pseudouridine synthase n=15 Tax=Moraxellaceae RepID=A5WCP4_PSYWF Length = 364 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 114/214 (53%), Gaps = 30/214 (14%) Query: 4 ILYQDEWLVAVNKPSGWLVHR-SWLDRDEKVVVMQTVRDQIGQ-HVFTAHRLDRPTSGVL 61 ++Y+DE L+ +NKPSG VH S LD V++ +RD + ++ HR+D+ TSG+L Sbjct: 147 VVYEDEGLIVLNKPSGMAVHGGSGLD----FGVIEAMRDATSKKYLELVHRIDKDTSGLL 202 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELDKIADKFAREDK 120 ++ ++L + + IQK Y +V+G + E +D PL+ ++ + DK Sbjct: 203 MIAKKRSTLKVLQEYLREKTIQKHYLCLVKGQPALNEFEIDAPLLRYTVANGERRVKVDK 262 Query: 121 G-PQPAV--THYRGLATVEM---PVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 P+ + T + LA +M PV+ L+E P TGR HQ+R HLA+L HP Sbjct: 263 ANPEAKLSQTTCKVLARFKMNGEPVS----------LIEAMPHTGRTHQIRVHLAYLGHP 312 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSL 208 I+GD K+ + + G++RL LHA QL + Sbjct: 313 ILGDDKY-------NIKDTSGVRRLCLHAWQLDV 339 >UniRef50_Q3AD19 Ribosomal large subunit pseudouridine synthase, RluA family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD19_CARHZ Length = 301 Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 121/238 (50%), Gaps = 32/238 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVH--RSWLDRDEKVVVMQTVRDQ--IGQHVFTAHRLDRPT 57 +++LY+D++L+ ++KP+G L H ++ + + + RD+ I + + +RLDR T Sbjct: 77 VKVLYEDDYLIVIDKPAGVLAHPVKNHFAPSMQELTLSYYRDKGRIFEGFYPIYRLDRNT 136 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFA 116 SG +L+ S +L + QI K Y A++ G L +++ +++ PL I + Sbjct: 137 SGPMLIAKFSLIAEMLNNSLRKRQINKIYLALIEGPLADKSGIINLPLGLLEGSIIKRAV 196 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 G QPA T Y+ + +PT + L+++E TGR HQ+R H A + HP+ Sbjct: 197 VP--GGQPACTKYQTVKA---------FPT--HTLLKVELLTGRTHQIRAHFAAIGHPLA 243 Query: 177 GDSKHG---DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 GD +G DL ++R LH +S HP T + ++++A L + +AL Sbjct: 244 GDDLYGGKMDL-----------IERQALHLYYISFPHPITKKTISLYAPLPRDFKEAL 290 >UniRef50_Q1CZL9 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=Q1CZL9_MYXXD Length = 559 Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 107/223 (47%), Gaps = 28/223 (12%) Query: 2 LEILYQDEWLVAVNKPSGWL-VHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 L+I+++DEWLV V KP G L V + ++ V+ R AHRLD TSG+ Sbjct: 354 LDIVFEDEWLVVVEKPEGLLSVPAKDVSVEDSVLARLRARAPEAAGTMLAHRLDLDTSGL 413 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFARED 119 L+ + L +QF ++ KRY A V G + E +D+P+ +LD + Sbjct: 414 LVAAKDARTYAALQRQFAGREVHKRYAAWVEGNVQGERGTIDFPMRVDLDDRPRQIHDPV 473 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH---LRHPII 176 G +PAVT + L + GR V L P TGR HQLR H AH L PI+ Sbjct: 474 HG-KPAVTEWHVLER-----SHGRT------KVALFPLTGRTHQLRVHAAHPLGLGAPIV 521 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTI 219 GD +G H G RL LHA LS HP TG+ LT+ Sbjct: 522 GDRLYG----------HPG-PRLHLHAEALSFQHPVTGQRLTL 553 >UniRef50_B7GQ28 Pseudouridine synthase, RluA family n=21 Tax=Bifidobacteriaceae RepID=B7GQ28_BIFLI Length = 320 Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 42/229 (18%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRS--WLDRDEKVVVMQTVRDQIGQHVFT---------A 50 + ++Y+D+ ++ V+KP G H S W V+ ++RD+ G H+ + Sbjct: 77 MAVVYEDDDVIVVDKPVGVAAHASVGWTGP----TVLGSLRDR-GVHIASYGAAGREGIV 131 Query: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELD 109 RLD TSG++L+ S A + +QF +H+++K YHA+V+G L E +A ++ P+ Sbjct: 132 SRLDVGTSGLMLVCKSDLAYTEMRRQFAEHEVKKTYHALVQGGLKENKATIEAPIGRA-- 189 Query: 110 KIAD-KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYG----LVELEPKTGRKHQL 164 K++D +F G +PAVTH+ L R+G LV + +TGR HQ+ Sbjct: 190 KVSDFRFCVTPAG-KPAVTHWDVL--------------ERFGHEATLVSVNLETGRTHQI 234 Query: 165 RRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFT 213 R H + + HP+ GD +G N +E GL R LHA +L HP T Sbjct: 235 RVHFSSIGHPLCGDPMYG---ANPVLSEALGLDRQWLHAMKLEFRHPRT 280 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 20/228 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV-----MQTVRDQIGQHVFTAHRLDRP 56 L++LY D ++ +NKP+G +H + D +V +R G HRLD+ Sbjct: 93 LKLLYLDGDVLVLNKPAGLTIHPASSQPDGTLVNRLLHHFPDMRAMAGDRPGIVHRLDKD 152 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKF 115 TSG+LL+ + A LA F + ++ K Y A+V G + V++ P+ + K K Sbjct: 153 TSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPERSDGVIELPVGRD-PKHPTKM 211 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A KG + A + ++ T P L+E+ TGR HQ+R H+A + HPI Sbjct: 212 AVVAKGGREAKSSWKLAWTA---------PDGTASLLEVAIATGRTHQIRVHMAAMGHPI 262 Query: 176 IGDSKHGDLRQN----RSGAEHFGLQRLMLHASQLSLTHPFTGEPLTI 219 +GD+ +G + + R GA +R MLHA +L+ +HP TGE L+ Sbjct: 263 VGDAVYGARQHSDWTRRGGAMARLAKRQMLHAWKLAFSHPGTGEELSF 310 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 118/236 (50%), Gaps = 18/236 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHR---SWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTS 58 L+IL++D+ L+ ++KP+G +VH +W ++ + HRLD+ T+ Sbjct: 109 LKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQVPRAGIVHRLDKDTT 168 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+L++ + EA LA+Q +Q +++ Y A+V G L ++ V+D P+ I Sbjct: 169 GLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKDGVVDAPIGRH--PIHRTRMAV 226 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + +PA THYR L T L+ +TGR HQ+R HL + HP+ GD Sbjct: 227 VQNGKPARTHYRVLEKF-----------TASTLLHCSLETGRTHQIRVHLLSIGHPLAGD 275 Query: 179 SKHGDLRQNRSGAEH-FGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 +G + S A+ L R LHA QL LTHP +G+ L + L D M AL Q Sbjct: 276 PVYGRTSPDPSTADAVVRLPRQALHAWQLELTHPHSGQILLWESPLPDD-MAALLQ 330 >UniRef50_Q6AIJ2 Probable ribosomal large subunit pseudouridine synthase A n=1 Tax=Desulfotalea psychrophila RepID=Q6AIJ2_DESPS Length = 211 Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 109/223 (48%), Gaps = 30/223 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV---VMQTVRDQIGQHVFTAHRLDRPTS 58 L+I+Y+D+ LV V KP G L + V + + + I Q HRLD TS Sbjct: 4 LKIIYRDDHLVVVIKPGGLLSVPGRGPENSDCVSSRLQAKIPEMITQP--AVHRLDMYTS 61 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G+++ +S E R L+ QF++ Q+ K+Y A++ G L E + P +LD + Sbjct: 62 GLMVYAVSKEIHRALSIQFQEQQVDKKYTALLEGCLQEVSGEIRLPFRVDLDNRPIQILD 121 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH---LRHP 174 G + +T +R +M G TR VE P TGR HQLR H AH L P Sbjct: 122 YQHG-KMGITLWR-----KMDEKNG---ITR---VEFTPMTGRTHQLRVHAAHAKGLGIP 169 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPL 217 IIGDS +G R G E +MLHA QLS THP GE L Sbjct: 170 IIGDSFYG---SGRDGDE------MMLHAHQLSFTHPIIGEKL 203 >UniRef50_A8U9H8 Pseudouridine synthase n=2 Tax=Bacilli RepID=A8U9H8_9LACT Length = 309 Score = 93.2 bits (230), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 116/230 (50%), Gaps = 22/230 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRD---EKVVVMQTVRDQIGQHVFTAHRLDRPTS 58 + ILY+D+ ++ ++K +G L + ++ + ++ ++ ++ HRLDR TS Sbjct: 95 MTILYEDDAIIVIDKEAGLLSIAAKFAQELTAHRQLINYVKQENQNNRIYVVHRLDRDTS 154 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 GV++ + + + + + +++ ++ Y A+V G + E+ + E + A Sbjct: 155 GVMVFAKTEKIKQDMQENWKEIVKERIYTALVEGVVREDEGTIKTWLTESKAMKVHSATY 214 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D G + A+THY+ + E + L+E +TGRK+Q+R H+ L HP+ GD Sbjct: 215 DNGGKLAITHYKKIRNNE-----------DFTLLEARLETGRKNQIRVHMETLGHPVAGD 263 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 K+ GA L+RL LHA+ L+L HP TGE + H+ + ++ Sbjct: 264 KKY--------GATSNPLKRLGLHATTLALIHPTTGELVRFHSKVPKAFL 305 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 93.2 bits (230), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 121/237 (51%), Gaps = 25/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-VMQTVRDQIG-----QHVFTAHRLDR 55 L+I+Y+D+ ++ +NK +G +VH + + + +V + D + HRLD+ Sbjct: 82 LDIIYEDKDILVLNKNAGLVVHPAPGNHENTLVNALIAYCDNLSTISGVNRPGIVHRLDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 TSGV+++ + + R L +QF+Q + +K Y +++G L +E +D P+ + K Sbjct: 142 DTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLKGELPYKEGKIDAPIGRDPHD-RKK 200 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A K + AVT+++ L + VE+E KTGR HQ+R H +++ P Sbjct: 201 MAVTRKNSKKAVTYFKVLEFFR-----------DHSYVEVELKTGRTHQIRVHFSYMGFP 249 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 ++GDS +G R NR A R +LHA +L HP + + A L D + +AL Sbjct: 250 VVGDSIYGKKR-NRLQA-----TRQLLHAYRLGFYHPRNDKWVEYKASLPDDFKKAL 300 >UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CF60_9PLAN Length = 317 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 16/239 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRS--WLDRDEKVVVMQTVRDQIGQHVF----TAHRLDR 55 LE+LY+D WL+ VNKP G + H + L + + Q G HRLD+ Sbjct: 83 LEVLYEDAWLIIVNKPPGMIAHPAGNILSGTVANALQYYLDQQTGVRSLLRPGIVHRLDQ 142 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG+L++ R L+ QF+Q+++ K Y AIVR ++ L E D I + Sbjct: 143 FTSGILIVAKEHLGHRSLSIQFQQNRVSKSYLAIVRDQPKQD------LFENNDAIGEHP 196 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + R A R P + L+ PKTGR HQ+R HLA L PI Sbjct: 197 TQAGVCMTTHPEALRAKAAFTRFEVVERLPG--HSLIRAFPKTGRLHQIRVHLADLGFPI 254 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 I D +G+ R + + R LHA Q+ +HP T + I AG+ + AL + Sbjct: 255 IADDFYGN--DARLLDDRELISRQALHAEQIEFSHPVTSLRMNISAGVPADFQLALQRI 311 >UniRef50_A9CFZ5 Pseudouridine synthase n=3 Tax=Rhizobiales RepID=A9CFZ5_AGRT5 Length = 222 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 111/213 (52%), Gaps = 24/213 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQHVFTAHRLDRPTSG 59 L I+++D+ L+ ++KPSG L S RD + +M V+ Q + + +RLD+ TSG Sbjct: 18 LTIVHRDDDLLVLDKPSGLL---SVPGRDPALSDSLMTRVQKQFPKALMI-NRLDKDTSG 73 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFARE 118 ++LM L+ +A +A QFE+ + +K Y AIV G + EE +D PL + D Sbjct: 74 IVLMSLNRKAHAAIAAQFEKRETRKSYVAIVWGTVAGEEGEVDLPLAIDPDNKPRHRVDH 133 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + G +PA + +R L + + P TR L P TGR HQLR H+ L HPI+GD Sbjct: 134 ENG-KPAQSLWRVLERLPL-------PATRLALT---PLTGRTHQLRVHMKALGHPILGD 182 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHP 211 + + G RLMLHA ++ HP Sbjct: 183 EFYAE------GEALTAAPRLMLHAQEVGFRHP 209 >UniRef50_B8I5R6 Pseudouridine synthase n=2 Tax=Clostridium RepID=B8I5R6_CLOCE Length = 303 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 114/213 (53%), Gaps = 25/213 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEK-VVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 ++Y D+ L+ VNK +G VH D+++K ++ ++ G ++ HRLDR TSG+ Sbjct: 76 FSVVYDDDNLLIVNKETGIPVHP---DKNQKEATLIDKLQSIYGPNLALCHRLDRNTSGL 132 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA--VLDYPLVEELDKIADKFARE 118 +++ + ++ ++ + +IQK Y IV G + ++ ++DY +E+ +K++ F Sbjct: 133 VIIAKNPATLEVMLEKIKNREIQKYYTCIVSGKMEKKNAELVDY--LEKNEKLSRVFINP 190 Query: 119 DKGPQPA--VTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 +K +T YR LA++ L+E+E TGR HQ+R HLA+ HPII Sbjct: 191 EKTRNSVQIITRYRILASM-----------NSLNLLEVELVTGRTHQIRAHLAYYGHPII 239 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLT 209 GD K+G +N+ + + +L AS+L+ Sbjct: 240 GDGKYGKNAENK----QYNAKYQLLCASRLTFN 268 >UniRef50_B0S0X9 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S0X9_FINM2 Length = 321 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 26/216 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT-----------A 50 L+I+Y+D+ L+ +NK +G L H + K +V V I + F Sbjct: 84 LDIIYEDDDLILINKKTGVLSHAANPQDYGKNIVDMMVSYLIKTNQFKPTQNSTFTPALV 143 Query: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDK 110 +RLDR TSG+++ + ++ + F++H+I K Y IV G L ++ + D L ++ DK Sbjct: 144 NRLDRNTSGIVVGAKTYDSLKYFNDLFKKHEITKIYETIVVGNLKDQTI-DLALEKDNDK 202 Query: 111 IADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 K V + + +Y LV ++ TGR HQ+R HL+H Sbjct: 203 NKSVINSSGKKSMTKVWNVKNFG--------------KYSLVNVDLLTGRTHQIRAHLSH 248 Query: 171 LRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQL 206 + HPIIGD K+G+ N+ + L +LH+ +L Sbjct: 249 INHPIIGDIKYGNREVNKYFKNKYDLNFQLLHSYKL 284 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 119/251 (47%), Gaps = 25/251 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG----QHVFTAHRLDR 55 L+ILY+DE +V +NK SG +VH + + D +V ++ D G + HRLD+ Sbjct: 77 LDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHCGDLSGIGGVERPGIVHRLDK 136 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA--VLDYPLVEELDKIAD 113 TSG L++ + A + L QF +KRY A+V+G + + V + ++++ Sbjct: 137 DTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQGIPSQSSGTVFTHIGRHPVNRLKM 196 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 G + A+T Y L P+T LV TGR HQ+R H+ +L H Sbjct: 197 AVVNPGSG-KAAITDYDLLCA---------DPSTDSSLVLCTLHTGRTHQIRVHMLYLGH 246 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P+IGD + + ++ RLMLHA +L HP TG+ + A + + L Sbjct: 247 PLIGDPIYAKPARQKAKP-----GRLMLHAWRLGFDHPRTGKRMDFEAPVPPEYTPWLQL 301 Query: 234 F--GWRGLLPE 242 F G G +PE Sbjct: 302 FPNGLYGAIPE 312 >UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N8_9BACT Length = 323 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 20/244 (8%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-DQIGQHVFT-------AHRLDR 55 ILY+D+ ++ ++KP+G +VH + + VV R Q+ + + HRLD+ Sbjct: 85 ILYEDDVMLVIDKPAGVVVHPAAGNPTGTVVNALLGRYPQLAEQLACTTSRPGIVHRLDK 144 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG L + ++ A L+ F + +K Y AI RG + + L+ K Sbjct: 145 DTSGCLAVAKTANAQFKLSTAFAGRETRKTYLAITRGVPIRRSGELSTLIGRHPVSRQKM 204 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A ++ + A+T YR VE TG G++ + TGR HQ+R HLA L P+ Sbjct: 205 AVVERNGKLAITRYR----VEY---TGMLDGVEIGVLAVRILTGRTHQIRVHLASLGVPV 257 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD+ +G R +G E R +LHA +L + HP TG P+ A + + L + G Sbjct: 258 LGDAVYGGARTAVAGVE-----RQLLHAWKLCVPHPATGTPMEFTAPPPEDIRRILERIG 312 Query: 236 WRGL 239 + L Sbjct: 313 VKTL 316 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 40/256 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-VMQTVRDQI----GQH-VFTAHRLDR 55 ++I+Y+D+W+ +NKPS +VH + + +Q DQ+ GQ+ HRLDR Sbjct: 93 IDIVYEDDWIAIINKPSDMIVHPGKGNYAGTLAGALQYHFDQLSDVAGQYRPGIVHRLDR 152 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL------MEEAVLDYPLVEELD 109 TSG++++ ++ L+ QFE+ +QK Y AIV G + ++ + +P E Sbjct: 153 NTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYRAIVWGRMEFDTDYIDTFMCVHPRAREKM 212 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 + D E + A T+Y + RY Y V L+P+TGR HQLR H+ Sbjct: 213 IVCD----EGGNARNAFTYYEVIE---------RYQAFTY--VRLKPRTGRTHQLRVHMQ 257 Query: 170 HLRHPIIGDSKHG---DLRQNRSGAEHFG----------LQRLMLHASQLSLTHPFTGEP 216 H+ H I+ D +G L+ G + ++R LHA L HP +G+P Sbjct: 258 HIGHSIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHAYCLEFFHPQSGKP 317 Query: 217 LTIHAGLDDTWMQALS 232 + A L + L+ Sbjct: 318 MKFEAPLPEDMQNTLA 333 >UniRef50_C8PW17 Pseudouridine synthase n=5 Tax=Moraxellaceae RepID=C8PW17_9GAMM Length = 365 Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 114/216 (52%), Gaps = 25/216 (11%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-HVFTAHRLDRPTSGVLL 62 I+Y+DE L+ +NKPSG VH E V++ +R+ G+ ++ HR+D+ TSG+L+ Sbjct: 141 IVYEDEGLIVLNKPSGMAVHGGS---GESFGVIEAMREATGKKYLELVHRIDKDTSGLLM 197 Query: 63 MGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVE------ELDKIADKF 115 + + L + + +QK Y +V GW+ E +D PL++ + K ++ Sbjct: 198 IAKKRSTLKTLQEHLREKTLQKTYLCLVVGWISSETQTIDKPLLKYTLPATQEGKSGERR 257 Query: 116 ARED---KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + D + +P+ T L E+ G+ + L+E +P TGR HQ+R HLA + Sbjct: 258 VKVDVKSEDSKPSQTQINVLQKFEL---NGQ----KVSLIEAKPLTGRTHQIRVHLASIG 310 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSL 208 HP++GD K+ N + + ++RL LHA QL++ Sbjct: 311 HPLLGDDKYNP---NVAKGDKM-VRRLCLHAYQLAI 342 >UniRef50_C4Z9Y6 Pseudouridine synthase n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z9Y6_EUBR3 Length = 324 Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 25/239 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSW---LDRDEKVVVMQTVRDQIGQHVF------TAHR 52 L ++Y+D+ ++A NKP L +S + +E+++ ++ + +R Sbjct: 93 LGVVYEDDDILAANKPVNMLSQKSKETDISANERLIGYLIKEGKLDFDTYKSFKPSVCNR 152 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLV--EELDK 110 LDR TSG++LMG S + L+Q + +K Y A+V G + E ++ L E ++K Sbjct: 153 LDRNTSGLILMGKSLHGLQYLSQVLKARTAEKYYMALVAGEVDEPMTIEGFLTKDEAVNK 212 Query: 111 IADKFAREDKGPQ--PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHL 168 + + RE + P T YR L T++M + + L+E+ TGR HQ+R HL Sbjct: 213 V--QITREPISDESLPIKTAYRPLKTIDMSASCHKAT-----LLEVHLITGRSHQIRAHL 265 Query: 169 AHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 + + HPIIGD K+GD R N E++ + +LHA H + I A L D W Sbjct: 266 SSIGHPIIGDIKYGDRRINAFYKENYHVTSQLLHAH-----HVILPDGRYIEAALPDIW 319 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 25/222 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 ++Y+DE++ ++KP +VH + +V ++ ++Q+ HRLD+ Sbjct: 75 FNVIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNGLLYKFKNQLSDLDPLRPGIVHRLDK 134 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG++++ +++A L QF+ QI+K Y AIV G E ++ P+ + K Sbjct: 135 NTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIVHGKTPESGIIAEPIGRNPND-RKKM 193 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A K + A+T Y+ L + Y L+ + TGR HQ+R H+A++ +P+ Sbjct: 194 AVVYKNSKQAITKYKKLKEFQ-----------EYSLLNINLLTGRTHQIRVHMAYIGYPV 242 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPL 217 +GD +G R+N + + MLH+ +L HP T + + Sbjct: 243 LGDIIYG--RKNS-----LKIDKQMLHSYKLIFNHPITNQKM 277 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 19/225 (8%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG----QHVFTAHRLDRPTS 58 LY+DE ++ + KP G +VH + R +V ++ R+ G HRLD+ TS Sbjct: 96 LYEDEDILVLVKPPGLVVHPADGHRQGTLVHGLLHHCRNLSGISGQLRPGIVHRLDKDTS 155 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G L++ + A L QQF+ +++K Y A++RG L E+ + K A Sbjct: 156 GCLVVAKNDLAHHNLVQQFKGREVEKTYQALLRGILAEDTGQVVLPIGRHPVHRKKMAVR 215 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 +G + AVTH+R V + G Y LVEL +TGR HQ+R H+A L HP+ GD Sbjct: 216 REGGREAVTHWR----VRQRFSAG------YTLVELLLETGRTHQIRVHMAALGHPLAGD 265 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 +G +N +G+ R LHA +L+ HP +G LT A L Sbjct: 266 RLYG---RNPEKDMPYGIDRQWLHAWRLAFNHPRSGRRLTFTAPL 307 >UniRef50_A6TAT3 Pseudouridine synthase n=57 Tax=Bacteria RepID=A6TAT3_KLEP7 Length = 263 Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 22/225 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 + +LYQDE LV +NKP+G L R+ V + V+ G HRLD TSG++ Sbjct: 48 ITLLYQDEHLVLINKPAGLLSLSGKDPRNLDSVHHRLVQRYPG--CTLVHRLDFGTSGLM 105 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDK 120 ++ + LL QQF Q + K Y A++ G L E E +++ + ++ + + A + Sbjct: 106 VIARNKGINALLCQQFSQRTVDKVYTALLCGHLAEDEGIVEAAIAKDPARFP-RMALCAR 164 Query: 121 GPQPAVTHYRGLATV------EMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 +PA + YR + + E +A R V L P+TGR HQLR H L +P Sbjct: 165 HGKPARSRYRVIDRLYQAREGERALALTR--------VTLTPETGRTHQLRIHCQLLGYP 216 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTI 219 I+G +G + G E RLMLHAS+L HP + EP+ I Sbjct: 217 ILGCDLYGG--RELPGTEQ--APRLMLHASELRFVHPVSHEPMHI 257 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 118/241 (48%), Gaps = 27/241 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV------MQTVRDQIGQ-HVFTAHRLD 54 L+I+Y+D+ ++ VNKP G +VH S ++ +V + D G+ HR+D Sbjct: 83 LDIVYEDDAILVVNKPKGLIVHPSPSTLNQPTLVHGLLAHTTQLSDLNGELRPGIVHRID 142 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIV-RGWLMEEAVLDYPLVEELDKIAD 113 + T+G+L++ ++EA +L + +Q I + Y AIV + + A +D P+ + K Sbjct: 143 KDTTGLLVVAKTNEAHEILVEDLKQRLISREYVAIVHHQFKHQSATVDAPIGRD-PKNRQ 201 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + A D+ + AVTH+ R+ + ++ + TGR HQ+R H +++H Sbjct: 202 RMAVTDQNSKQAVTHF---------YLAERF--NDFSVLRCKLDTGRTHQIRVHAQYIKH 250 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GD Q S + LHA +L+LTHP + E +T A L T + + Sbjct: 251 PIVGD-------QTYSYKNTWETNGQCLHAQKLTLTHPVSKEVMTFEAELPQTMKDVIEE 303 Query: 234 F 234 Sbjct: 304 I 304 >UniRef50_Q1JVY6 Pseudouridine synthase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JVY6_DESAC Length = 295 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 33/239 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSW--LDRDEKVVVMQTVRDQIGQH-VFTAHRLDRPTS 58 L ILY+ ++ V+KPSG +H S DR+ +V + +R + + V HRLD TS Sbjct: 83 LFILYESREILIVDKPSGLAIHSSEGHQDRNLAALVDELIRSRGDAYQVAPIHRLDLETS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G +L G +A L + F H+++K Y A+V G ++ ++ K + Sbjct: 143 GPVLFGKGKKACSELGKLFMCHEVEKSYLALVAGKTPGRGLIQ-------SEVPSKGKTK 195 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + A T ++ L E + L+++ TGR+HQ+RR LA L HP+ GD Sbjct: 196 E-----AQTAFQALDRNE-----------QASLLKVTLYTGRQHQIRRQLAELGHPLFGD 239 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 ++ G + L RL LH QL+ PF+G P+ I++ L Q L G R Sbjct: 240 RRY-------RGQQPDALPRLFLHCCQLAFIDPFSGAPVEINSPLPADLSQFLDTVGLR 291 >UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales RepID=B1XXM0_LEPCP Length = 369 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 110/230 (47%), Gaps = 23/230 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRS---WLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTS 58 L ++++D L+ ++KP+G +VH + W ++ HRLD+ TS Sbjct: 119 LAVVHEDAHLLVIDKPAGLVVHPAAGHWSGTLLNGLLAHHAAAAHLPRAGIVHRLDKDTS 178 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEE-LDKIADKFA 116 G++L+ S +A L + +++ Y A+V G +M+ V+D PL + + ++ Sbjct: 179 GLMLVAKSLQAHTALVRAIAARDVKREYLALVHGAVMDGLQVIDAPLGRDPVSRVRMAIV 238 Query: 117 REDKGPQPAVTHYRGLATVEMP-------VATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 K PA T R LA E+P R P + V + TGR HQ+R HLA Sbjct: 239 ASGK---PARTDVRRLAVAELPGDGVRQLPGATRAPR-QVSAVHCQLHTGRTHQIRVHLA 294 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTI 219 HP++ D+ +G GA FGLQR LHA++L L HP G PL Sbjct: 295 SRGHPLLADAMYG-------GAPAFGLQRQALHAARLHLLHPIDGRPLAF 337 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 131/262 (50%), Gaps = 34/262 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG----QHVFTAHRLDR 55 L ILY+D L+ ++KP+G +VH + +V ++ RD G HRLD+ Sbjct: 85 LSILYEDHDLLVLDKPAGLVVHPAAGHVSGTLVNALLFHCRDLAGIGGVMRPGIVHRLDK 144 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPL----VEELDK 110 TSG+L++ + A + LA QF++HQ+ K Y A+V G E+ +D P+ VE Sbjct: 145 DTSGLLVVAKTDAAHQGLALQFKKHQVGKTYQALVYGDPREKTGQIDLPVGRHPVER--- 201 Query: 111 IADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 K + + + + A T +R VAT L+ ++ TGR HQ+R HLA Sbjct: 202 --KKMSTKSRRGKEAATRWR--IAERFGVAT---------LLNVDIVTGRTHQIRVHLAA 248 Query: 171 LRHPIIGDSKHGDLRQNRSGAEHFGLQRL------MLHASQLSLTHPFTGEPLTIHAGLD 224 + HP++GD+ +G ++ + + RL LHA++LS THP T + L HA L Sbjct: 249 IGHPVVGDAVYGSSKRATTLTDPAVKGRLKEMSRQALHAARLSFTHPVTHKILEFHAPL- 307 Query: 225 DTWMQALSQFGWRGLLPENERV 246 M+ L F + P+++ V Sbjct: 308 PADMEDLCAFLRKHCCPDSQLV 329 >UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1I1_DESRM Length = 303 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 25/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L I+ +DE + VNK G VH + + +V + + +R+DR TS Sbjct: 83 LSIISEDEDIALVNKQPGMCVHPTLAYPSGTLANGLVYHWLENNPAPTFHAVNRIDRNTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G++L+ +S + + L Q ++ Q+ + Y A+V G +++ +D PL E+ + K Sbjct: 143 GLVLVAKNSYSAQKLFLQRKRKQLARSYVALVHGKIVQRNGYIDLPL-EKCEGKTTKRQI 201 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 G Q A+T + L + T L+ L P+TGR HQ+R HL+HL HP++G Sbjct: 202 SSTGQQ-ALTRFEVLQYI-----------TDCTLIRLMPETGRTHQIRVHLSHLGHPLVG 249 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 D+ +G S A+ + R LHA ++S HP TG P++ L + +Q +++ G Sbjct: 250 DTLYGG-----SIAQ---IGRHCLHADKISFLHPRTGHPMSFQIPLAEDMLQVITEMG 299 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 117/247 (47%), Gaps = 31/247 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVH-----------RSWLDRDEKVVVMQTVRDQIGQHVFTA 50 L+I+Y+D+ ++ VNKP+G +VH + L RD + D Sbjct: 90 LDIIYEDDDILVVNKPAGMVVHPGAGNYTGTLVNALLGRDLDTF---SAMDDGSSRPGIV 146 Query: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM--EEAVLDYPLVEEL 108 HRLD+ TSGV+++ S++ L++ F + ++K Y A+ RG + + + + Sbjct: 147 HRLDKETSGVIIVAKSAKNLDKLSRSFARRDVEKYYVALCRGTIRVGRDTITSHIGRSRS 206 Query: 109 DKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHL 168 ++ + + + A++HY+ LA LV+L+ TGR HQ+R H+ Sbjct: 207 NRQKMENTNDSNRGKEAISHYKVLA-----------DNNGATLVKLKIDTGRTHQIRVHM 255 Query: 169 AHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 + + HP++GD +G R + E R +LHA + + HP T E +T A L D + Sbjct: 256 SGINHPVVGDKLYGVRRLD----EKESPDRHILHAWRTRIIHPGTQEIMTFTAPLHDDFK 311 Query: 229 QALSQFG 235 +FG Sbjct: 312 SVCDKFG 318 >UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Tax=Spiroplasma citri RepID=Q14NK8_SPICI Length = 306 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 31/247 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTA---------HR 52 L ILY+D +L+ ++KP+ +VH + +++ +V R G TA HR Sbjct: 81 LTILYEDSYLMVIDKPNNLVVHPAPGHQNDTLVNALLAR---GVQWSTASGEQRPGIVHR 137 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKI 111 +DR T+G L++ + L QQ + Q+Q+RY A+V G ++E A +D P+ + + Sbjct: 138 IDRQTTGTLIIAKNDVVHHQLQQQIQTKQLQRRYLALVHGQIIENRAKIDAPIGRDPNN- 196 Query: 112 ADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 K K + A+T+ V R+ Y +E E ++GR HQ+R HL ++ Sbjct: 197 RKKMVVTAKNSKKALTNI---------VVIERF--NDYTYIECELESGRTHQIRAHLKYI 245 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 HPI+GD +G + + E FG LHA QL HP T E LTI A L + Q L Sbjct: 246 NHPIVGDPLYGTVADKK---ESFG---QYLHAYQLRFIHPVTKESLTITAALPQEFEQRL 299 Query: 232 SQFGWRG 238 + +G Sbjct: 300 AILRAKG 306 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 119/259 (45%), Gaps = 39/259 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR----------DQIGQHVFTAH 51 L+++Y+D++L+AVNKP G + H + +V R + G H Sbjct: 77 LDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALLGRMPLPEQPDYDSEAGYRPGIVH 136 Query: 52 RLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WL------MEEAVLDYPL 104 RLD+ TSGV+++ + A LA F+ + +K Y AI G W +E + +P+ Sbjct: 137 RLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYLAIAAGQWRADGPARVEAPIGRHPV 196 Query: 105 VEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQL 164 + + RE A T + LA P GR LV +P+TGR HQ+ Sbjct: 197 QRQRMTVGGANPRE------AQTLFTPLAA--HPDGHGRT----LALVRAQPRTGRTHQI 244 Query: 165 RRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 R HLAHL PI+GD+ +G + + R LHA LS+ HP TG L +HA Sbjct: 245 RVHLAHLGSPILGDAVYGRSSET--------MLRHALHAHFLSVPHPGTGRLLHLHAPAP 296 Query: 225 DTWMQALSQFGWRGLLPEN 243 D + A G G +P + Sbjct: 297 DDMLNAWIALG--GAMPSD 313 >UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBH1_9FIRM Length = 299 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 25/234 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQHVF-TAHRLDRPTS 58 L I+Y+DE ++ +NKP+ VH S + + + + ++ V+ +RLDR T+ Sbjct: 81 LNIIYEDEDILVINKPADMPVHPSAGNYENTLANGIAWYFAEKGEDFVYRCINRLDRDTT 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G L++ + + +L+ Q ++ QI + Y A+V G L + ++ P+ + + Sbjct: 141 GALILAKNPLSAAILSVQMKKRQILRTYLALVDGLLPDSGTINAPIARMEGSVITREVNF 200 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 G + A+THY LA G+ Y L EL +TGR HQ+R H+ ++ HP+ GD Sbjct: 201 GTG-ESAITHYERLAA-------GK----EYSLAELHLETGRTHQIRVHMKYIGHPLPGD 248 Query: 179 SKHG-DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + D R+ + R LH+ QL THP TG+ + A L ++ A Sbjct: 249 YLYNPDYRR---------INRQPLHSYQLEFTHPTTGKVMLFTAPLPIDFISAF 293 >UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L0S2_9DELT Length = 558 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 20/225 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV-----MQTVRDQIGQHVFTAHRLDRP 56 L +LY D+ L ++KP G VH + + +V +R+ G+ HRLD+ Sbjct: 91 LRVLYADKELAVLDKPPGLTVHPAPGLPEGTLVNRLLHHFPGLREMAGERPGIVHRLDKD 150 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKF 115 TSG+L++ L+ LA F Q+ K Y A+V G + + P+ + K K Sbjct: 151 TSGLLMVALTEPVRLALAADFAARQVHKTYLALVHGRPDGKGGDIRLPIGRD-PKYRTKM 209 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A KG +PA + +R PV T P L+E+ TGR HQ+R H+A + HPI Sbjct: 210 AVPHKGGRPAHSRWR-------PVWTA--PDGTASLLEVTIFTGRTHQIRVHMAAIGHPI 260 Query: 176 IGDSKHGDLR----QNRSGAEHFGLQRLMLHASQLSLTHPFTGEP 216 IGD+ +G + + R GA R MLHA +LS THP EP Sbjct: 261 IGDAVYGPHQHAAWKRRGGAIARLASRQMLHAWKLSFTHPVLKEP 305 >UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=C4XFS9_MYCFE Length = 315 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 26/249 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQHVF-----TAHRLD 54 L+I Y+D+ LV +NKPS +VH S ++ +V ++ ++ + HR+D Sbjct: 84 LDIKYEDDDLVIINKPSNLVVHPSPGHYNDTLVNGLLYHFKNNLSNENGLLRPGIVHRID 143 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADK 114 + TSG+L++ +++ L ++H+I++ Y AIVRG L+E + L + + K Sbjct: 144 KDTSGLLIIAKNNKMHNSLTDMLKRHEIERSYLAIVRG-LIENPLTKINLPIARNTVDRK 202 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 K + A+T L + + P + LV E KTGR HQ+R HL++++HP Sbjct: 203 MMSVHKEGKEAITFVHLLKHFYL----DKEPMS---LVRCELKTGRTHQIRVHLSYIKHP 255 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + GD +G + F QR LHA +L HP T + + ++A + + ++ + Sbjct: 256 VYGDPTYG------KSVDEFN-QR--LHAYKLKFIHPLTKKEICVYAPVPKEF--DVADY 304 Query: 235 GWRGLLPEN 243 + LL N Sbjct: 305 DFNELLKNN 313 >UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO n=53 Tax=Bacillaceae RepID=YJBO_BACSU Length = 283 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 114/236 (48%), Gaps = 45/236 (19%) Query: 2 LEILYQDEWLVAVNK------------PSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT 49 L+ILY+DE ++ +NK PSG + + +D + V TV H+ T Sbjct: 66 LDILYEDEHVLVINKQPYVSSIPSREHPSGSIAN-GIIDHYQTTGVRATV------HLVT 118 Query: 50 AHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEEL 108 RLDR TSG++L+ A +L+ + +++RY A+V G + + E +D P+ Sbjct: 119 --RLDRDTSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRHP 176 Query: 109 DKIADKFAREDKGPQPAVTH-YRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 D I ++ D Q AVTH Y A +M V L+ +TGR HQ+R H Sbjct: 177 DSIIERTVTPDG--QKAVTHFYVTCANDDMTS------------VALQLETGRTHQIRVH 222 Query: 168 LAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 +++L HP+ GD+ +G RQ + R LH+ LS HP T E + HA L Sbjct: 223 MSYLGHPLCGDTLYGGTRQE--------IGRQALHSEHLSFIHPLTQENMRFHAPL 270 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 31/245 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQHVF----TAHRLDR 55 L+I+Y+D ++ +NK G + H +V V+ +D G HRLD+ Sbjct: 79 LDIIYEDRDILVINKQPGIITHPIPSHTSGTIVNGVLYHCKDLQGIGGVLRPGIVHRLDK 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL------MEEAVLDYPLVEELD 109 TSGV+++ + A + L +QF+ +K Y +V+G +E + P++ Sbjct: 139 DTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKGVPKRKEGDIEINIARNPVL---- 194 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 ++ + G +PA+THY+ + R LV PKTGR HQ+R H+ Sbjct: 195 RVKMTVTNSEYG-KPALTHYKVV----------REFGDIAALVFAYPKTGRTHQIRVHMK 243 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 ++ HP++GD +G +++ E FG++R MLHA LS HP TGE + A + + + Sbjct: 244 YIGHPLMGDEVYGRAKED----EIFGIKRQMLHALSLSFYHPRTGEKVKFIAKIPQDFKE 299 Query: 230 ALSQF 234 A+ + Sbjct: 300 AIQKL 304 >UniRef50_A0Y082 Pseudouridine synthase n=2 Tax=Alteromonadales RepID=A0Y082_9GAMM Length = 235 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 22/226 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-----HVFTAHRLDRP 56 ILYQD ++ +NKPSG L + V + V Q G HRLD Sbjct: 22 FSILYQDNDILVINKPSGLLSLSGKNSENWDSVHYRLVNGQKGLTPAFLKAKLVHRLDLG 81 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKF 115 TSG++L+ L+ + + L +QF+ ++K Y A+++G + E+ +D P+ ++ Sbjct: 82 TSGIMLVSLNDVSSKHLNKQFQLRSVKKHYVAVLQGCISEDRGQIDAPIAKDTQLFPRVK 141 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + +G +PAVT + + + PV T V P TGR HQLR H + HPI Sbjct: 142 ICKLEG-KPAVTEFNVIKRLANPVRT---------YVHFSPLTGRTHQLRIHSHFIGHPI 191 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 +G DL ++ + +E +RL LHAS L HP T + + IH Sbjct: 192 LG----CDLYKS-AHSEKLS-KRLQLHASDLFFEHPTTNQAIHIHC 231 >UniRef50_Q2LVB7 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LVB7_SYNAS Length = 324 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 25/228 (10%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-GQ-HVFTAHRLDRPTSGVL 61 +L++D+ ++AV KP G + + +V Q +++ G+ H F HRLD+ SGVL Sbjct: 109 VLFEDQHVIAVEKPVGIATFSADGSASVQWIVAQALKEHSRGKIHAFAVHRLDKEVSGVL 168 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDK 120 L S A + +++++ +KRY+A+V G + ++ LVE+ + RE Sbjct: 169 LFAKSKMAMDHIKEKWKE--AEKRYYALVEGKPESPDGTIESWLVEDHAQKVHS-TRESS 225 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 + +VTHYR + V +Y L++++ +TGRK+Q+R HL+ + PI GD K Sbjct: 226 KAKFSVTHYRIIKQV-----------NQYTLLDVKLQTGRKNQIRVHLSDIGCPIAGDRK 274 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 +G A F ++R+ LHA LS HP TGE ++I + + + ++ Sbjct: 275 YG-------AAADF-VRRIRLHAYYLSFPHPVTGERISIESPMPEGFL 314 >UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZUU7_9FIRM Length = 293 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 35/239 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTA---------HR 52 + +LY+DE ++ VNKP+ VH S + T+ + + ++ T +R Sbjct: 81 IPVLYEDEDILVVNKPADMPVHPSLGN------YTNTLANGVAAYLETKGESCPFRCINR 134 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIA 112 LDR TSG L++ ++ + +L+ Q QI + Y A+V G + + P+ D + Sbjct: 135 LDRDTSGALILAKNALSAAILSVQMRNRQISRTYLAVVEGIPRQSGTISAPISRAADSVI 194 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 ++ + G + A+THY+ L + L+E+ +TGR HQ+R H+ ++ Sbjct: 195 ERRIDFENG-ESAITHYQLLEV-----------KNNHSLLEIHLETGRTHQIRVHMGYIG 242 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 HP+ D + + +R LH+ QL HP TG P+ + A + + A Sbjct: 243 HPLPADYLYNPVYDT--------FKRQPLHSLQLKFCHPITGTPMCLMAPVPEDMSNAF 293 >UniRef50_UPI00016B2413 ribosomal large subunit pseudouridine synthase, RluD subfamily protein n=3 Tax=candidate division TM7 RepID=UPI00016B2413 Length = 379 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 102/219 (46%), Gaps = 40/219 (18%) Query: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT-----AHRLDRPT 57 E +Y+D ++ +NKP+G L H +E V+ T HRLDR T Sbjct: 175 ETIYEDNDIIVINKPAGMLTHAKGAIAEE-FTAADIVKPITNYKADTNRPGIIHRLDRNT 233 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFA 116 SGVLLM +S+A + +QF Q ++K Y+AIV G + +A++D P+ Sbjct: 234 SGVLLMVKNSDAASKIQKQFSQRTVKKTYYAIVCGIPYQHKALIDLPI------------ 281 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTR------YGLVELEPKTGRKHQLRRHLAH 170 ++ P T G V A Y R L++L+PKTGR HQLR H+ + Sbjct: 282 --ERNPSRPSTFRVG---VNGKSAQTSYEVERSIIKKNISLIKLQPKTGRTHQLRVHMQY 336 Query: 171 LRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLT 209 L PI+GD +G AE R+ LHA L +T Sbjct: 337 LNTPILGDLVYGG-----KPAE-----RMFLHAESLEVT 365 >UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae RepID=C9KIU1_9FIRM Length = 296 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 26/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV--VVMQTVRDQIGQHVF-TAHRLDRPTS 58 L+I Y+D++L+ VNKP+G LVH + + + V+ + H + HRLDR TS Sbjct: 78 LDIRYEDDYLLIVNKPAGQLVHPTTKEAHGTLGNAVLYWYKAHGEHHAYHPVHRLDRNTS 137 Query: 59 GVLLMGLSSEAG-RLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFA 116 G++L+ + +L + E + Y A++ G L E ++D P+ L I + Sbjct: 138 GLVLIAKVPQVQYKLTPRHGEGKLFHREYLALIEGELTPPEGLIDAPIARALPSIILRKV 197 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 D Q A THY + T + L+ L TGR HQ+R HLAHL HP++ Sbjct: 198 SPDG--QTARTHYDTVQT-----------DGKLSLIHLVLDTGRTHQIRVHLAHLGHPLL 244 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD + G ++R LHA++L HP TG + + L Q +S F Sbjct: 245 GDDLY--------GGNLARIKRQALHAARLHFRHPMTGAEIDVQVPLPSDMAQIVSDF 294 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 21/246 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRD--QIGQHVF--TAHRLDR 55 E +Y+D+ L+ ++KP G +VH + + +V ++ R+ +G + HRLD+ Sbjct: 95 FESIYEDDSLLVLSKPPGIVVHPGNGNTEGTLVHGLLYHCREIGGVGDAIRPGIVHRLDK 154 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADK 114 TSG +++ + R L F++ Q+ K YHA+V G + E + P+ K Sbjct: 155 DTSGAMVVAKDERSLRTLVDSFKERQVYKVYHALVCGIPKKYEGRIVAPIGRH-SVHRQK 213 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A ++ + A T+++ + E T P Y L+ + +TGR HQ+R H++ + P Sbjct: 214 MAISERTGKFAATNWQVVEVFE----TKDGP---YSLLRVHIETGRTHQIRVHMSSIGCP 266 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 I GD +G RQN + A R MLHAS+L L HP TG ++ A L + + L Sbjct: 267 IAGDQVYGSKRQNPAFA------RQMLHASRLRLPHPVTGRTMSFTAPLWQDFQEVLEDM 320 Query: 235 GWRGLL 240 W G L Sbjct: 321 DWSGAL 326 >UniRef50_B9XDK1 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XDK1_9BACT Length = 283 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 119/250 (47%), Gaps = 41/250 (16%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAH--------- 51 ++ ILY+D ++AV+KP+GW++ D+ + + + ++ + F AH Sbjct: 15 LIPILYEDRSVLAVDKPAGWMLAPDSWDKTGRNLQL-ALQSSLNAGDFWAHSRNIKFLRY 73 Query: 52 --RLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG------WLMEEAVLDYP 103 RLD T+GVLL+ S A R + FE ++K Y A+V+G W + ++ P Sbjct: 74 VHRLDAETTGVLLLCKSLGALRAYGELFETRSVEKFYLAVVQGIPKQSEWTCKLPLIADP 133 Query: 104 LVE---ELDKIADKFARED-KGPQP----AVTHYRGLATVEMPVATGRYPTTRYGLVELE 155 +V+ ++ + D +GPQ A TH+R + T++ LVE + Sbjct: 134 VVKGKMQVVTPGKPLPKSDPRGPQAELKDAETHFRVIQTLQ-----------DKALVEAQ 182 Query: 156 PKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGE 215 P TGR HQ+R HLA HPI+GD +G N A G Q + L A +L PF Sbjct: 183 PMTGRTHQIRVHLAASGHPIVGDPLYG----NAPAAASKGAQIIALRAIKLIYWDPFQKR 238 Query: 216 PLTIHAGLDD 225 + I A D+ Sbjct: 239 QIRIAAPTDE 248 >UniRef50_B7PYG1 Ribosomal pseudouridine synthase, putative n=1 Tax=Ixodes scapularis RepID=B7PYG1_IXOSC Length = 443 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 96/209 (45%), Gaps = 41/209 (19%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD-------QIGQHVFTAHRLDRP 56 +LY D ++ +NKP G L H + V+ + + D + ++T HRLDR Sbjct: 184 VLYNDNDILVLNKPYGMLCHGPAPGVSDACVLTKLLPDLSSALYPRQDAKLYTVHRLDRD 243 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVE--------- 106 +GVLL+ + +L F++HQ+ K Y AI G E V+D PL E Sbjct: 244 VTGVLLLARTQRMADMLNSLFQKHQVSKTYLAITAGVPDHLEGVIDMPLAEGEVEGAKRM 303 Query: 107 --------ELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKT 158 E ++ KF + AVT YR LA+ R G +EL P T Sbjct: 304 VLNPKLDPEFQRLVPKFRKS----FAAVTTYRVLASC-----------GRAGYLELRPTT 348 Query: 159 GRKHQLRRHLA-HLRHPIIGDSKHGDLRQ 186 G KHQLR HL LR PI+GD K+ LR+ Sbjct: 349 GVKHQLRAHLGLGLRCPILGDHKYSHLRR 377 >UniRef50_Q7UUI8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUI8_RHOBA Length = 321 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 120/247 (48%), Gaps = 25/247 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-----DQIGQHVFTAHRLDRP 56 EI+++DE ++ VNK +G L DR E ++ V + + F HRLDR Sbjct: 84 FEIVFEDEHIIVVNKSAGTLT--VPTDRGEPNSLVDRVSIYLSYSKSKKEAFVVHRLDRE 141 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLV--EELDKIAD 113 TSG+L+ G LL +QF+ + + +HAIV G + E E + L LD+ Sbjct: 142 TSGLLVFGKHEPIADLLIEQFKDRRPTRVFHAIVAGNVSEDEGTFESHLATGSNLDRYE- 200 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 R K A+THY+ + + ++ TT L+E + +T +++Q+R A+ H Sbjct: 201 --TRPGKDTDQAITHYKVVRRLAERESSHGEETT---LIEAQLETSKRNQVRVQFANAGH 255 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++GD ++ + + + +R+ LHAS L HP +GEP+ D A+ + Sbjct: 256 PVLGDPRY---KPKEATHARWHRKRMALHASTLGFFHPVSGEPV----NFDTPLPSAMEK 308 Query: 234 F--GWRG 238 F G RG Sbjct: 309 FVAGARG 315 >UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A4J9H9_DESRM Length = 320 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 25/235 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVH---RSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTS 58 +E+LY+D++L+ +NKP+ LVH ++ + + + + HRLDR TS Sbjct: 102 IEVLYEDDFLLVLNKPAHQLVHPTGQTTRGTMANYLAYYLKQRNVVSAIRPVHRLDRETS 161 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFAR 117 G ++ S + +L QQ ++ +++ Y A+V+G + + +D P+ +A++ A Sbjct: 162 GCVIFAKDSRSQFILEQQLKERTLKRTYWALVKGIVHPPSGTIDAPIGPH-PSLANRRAI 220 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + G Q ++THY+ L + +P L++L TGR HQ+R HLAHL +PIIG Sbjct: 221 NEHGEQ-SITHYQTLRS---------FPEI--SLLKLNLDTGRTHQIRLHLAHLGYPIIG 268 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 D + G + R LHA +S H + +HA L + QA++ Sbjct: 269 DRMY--------GVRSPWINRQALHAYDVSFRHLKENHEIAVHAPLPTDFAQAIN 315 >UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae RepID=C8PVB8_9GAMM Length = 380 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 27/245 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV---VMQTVRDQIGQHVFTAHRLDRPTS 58 L+ILY+DE ++ +NKP G +VH + +V + + HR+D+ TS Sbjct: 143 LDILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNALLFHYPDSRTLPRAGLVHRIDKETS 202 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA---VLDYPLVEELDKIADKF 115 G++++ S++ L Q + + + Y AIV E A +D P+ + K Sbjct: 203 GLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLASAAELARHRTIDAPIGRHPTQ-RTKM 261 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A G +PAVTH + + V+ LV + +TGR HQ+R HL++L P+ Sbjct: 262 AVVSSG-KPAVTHLEKITAISDAVS----------LVSVRLETGRTHQIRVHLSNLGFPL 310 Query: 176 IGDSKHGDLRQNR-------SGAEHF--GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 +GD +G R+N +H QR LHA +L HP TGEP+ + A L + Sbjct: 311 LGDPLYGAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIHPKTGEPIKVQARLPED 370 Query: 227 WMQAL 231 Q L Sbjct: 371 MQQLL 375 >UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QV86_BRAHW Length = 329 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 121/237 (51%), Gaps = 28/237 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQ--IG--QHVFTAHRLDR 55 L+ILY+D++L+ +NKP+G VH S + +V ++ ++D +G + HRLD+ Sbjct: 109 LDILYEDKYLLVINKPAGMSVHCSPSEMSGTLVNALLYKIKDFDFVGNKERAGIIHRLDK 168 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIADK 114 TSG++++G ++ + +QF+ I+K YHAIV G L + + ++ P+ Sbjct: 169 DTSGLMIIGKNANIVSSIQEQFKNRTIKKIYHAIVVGVLKDNYIEINLPIGRHHVYRKKM 228 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 RED + A+TH + L R+ + + L+E+ KTGR HQ+R H ++ P Sbjct: 229 TVRED--GKEALTHIKVLK---------RFNS--HTLIEINLKTGRTHQIRVHSSYKGFP 275 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + GD + +S +++ G LML A ++ HP T E L D + L Sbjct: 276 VAGDKIYS-----KSFSKYSG---LMLVAKKIEFMHPITKELLDFEIDYPDYFTNFL 324 >UniRef50_B0PEI9 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0PEI9_9FIRM Length = 338 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 38/215 (17%) Query: 2 LEILYQDEWLVAVNKPSGWLVHR-------SWLDRDEKVVVMQTVRDQIGQHVFT---AH 51 ++I+Y+DE ++ VNKP+G +VH + ++R + + V + ++ F + Sbjct: 101 IDIIYEDENILLVNKPAGLVVHEDEHQSSDTLINRIQHHLYNCGVYNPAEENSFAPALCN 160 Query: 52 RLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKI 111 R+DR T+G+++ ++ A R+L ++ + ++QK Y IV G + +E+ + L Sbjct: 161 RIDRNTAGIVIAAKNAAALRILNEKIKARELQKLYLCIVHGTMPKES-------DTLKAF 213 Query: 112 ADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRY---------GLVELEPKTGRKH 162 K AR + +A + P+ GR T Y L+E++ TGR H Sbjct: 214 LRKDARTNT-----------VAVYDHPIPDGRTILTHYRVVAQKDRLSLLEIDLLTGRTH 262 Query: 163 QLRRHLAHLRHPIIGDSKHGDLRQN-RSGAEHFGL 196 Q+R HLAH+ HP++GD+K+G R N ++G +H L Sbjct: 263 QIRAHLAHIGHPLLGDAKYGRNRDNHKTGLKHQAL 297 >UniRef50_Q5WF07 Pseudouridine synthase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WF07_BACSK Length = 301 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 118/234 (50%), Gaps = 31/234 (13%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV---VMQTVRDQIGQHVFTA-HRLDRP 56 + I Y+DE L+ +KP G + DR + V+ + Q Q F A +RLDR Sbjct: 81 LFGIPYEDEHLLVADKP-GHMATIPSRDRPGGSLANGVLHYYKQQHLQATFHAVNRLDRG 139 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKF 115 TSG+L++ A LL++ +Q +++ Y A+V G L E+A +++ P+ D+ Sbjct: 140 TSGLLIVAKHRYAHDLLSRLQQQGGVKRCYKALVTGVLSEKAGIINAPI----DRKPGSI 195 Query: 116 AREDKGP--QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + GP + A+THY+ VE T + LV L+ +TGR HQ+R H A++ H Sbjct: 196 IEREVGPGGKSAITHYK----VEAESKT-------HSLVSLQLETGRTHQIRVHFAYIGH 244 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 P++GD +GD + L LH +++LTHPFT E L + L W Sbjct: 245 PLVGDGLYGDHGE--------ALAHQALHCDRVALTHPFTDEVLYVEKSLPKEW 290 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 29/227 (12%) Query: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTV-----RDQIGQHVFTAHRLDRPT 57 EILY+D+ L+ VNKP G L+H + +R V + V R + V HRLD+ T Sbjct: 87 EILYEDDHLLIVNKPVGLLLHPT--ERYHHVTLDHLVSGHFFRTGLEAKVRHVHRLDQDT 144 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFA 116 SGV+L A LL + + I++ Y A V G + E ++ P+ + D+ Sbjct: 145 SGVVLYAKHPWASALLDEMLRERTIKRTYVAYVSGQMPKERGKINEPIGK--DRNHGTRR 202 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 R PA+THY+ R+ T VE + +TGR HQ+R H +H+ HP++ Sbjct: 203 RVTPNGDPAITHYQ---------VKERFQTATK--VECQLETGRTHQIRVHFSHIGHPLL 251 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 GD +G R+ ++R LHA+ L HPF GE + + A L Sbjct: 252 GDELYGGKREL--------IKRQALHAAVLKFEHPFGGEVIEVTAPL 290 >UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A8F4Z7_THELT Length = 294 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 44/233 (18%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTA---------HR 52 L+ILY+D+ L+ +NK +G +H S R ++ G H + A HR Sbjct: 86 LDILYEDDNLLILNKKAGITIHPSEKTRSTTLIQ--------GLHFYGAKKGFKPHLVHR 137 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIA 112 LDR TSGVL++ + + R L+ F ++K Y +V G + + +D PL Sbjct: 138 LDRDTSGVLVIAKNVKTARTLSHMFRNRLVKKEYITLVSGKIFGDGFIDKPL-------- 189 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 A+T Y+ L L+ + TGR HQ+R+H A + Sbjct: 190 --------DGSEALTEYKVLENFR-----------DTSLLRVILHTGRTHQIRKHFALIG 230 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDD 225 +P++GD +GD + N + L+R LH ++S T+P ++I A L D Sbjct: 231 NPVVGDILYGDKKVNELFKKKHNLRRQFLHCIRISFTNPSEPGVISIKAPLPD 283 >UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veillonellaceae RepID=D2RJC8_ACIFE Length = 294 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 27/224 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLD-RDEKVVVMQTVRDQIGQH--VFTAHRLDRPTS 58 L +LY+DE L+ V+KP+G L+H +W RD V + + GQH + +RLDR T+ Sbjct: 77 LSLLYEDEDLLVVDKPAGMLIHPTWSGARDTLVQAVGGYFRRTGQHCGIHPLYRLDRDTT 136 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAR 117 GVL++ S+ A L + + QI + Y A+ G W + + +++P+ + + R Sbjct: 137 GVLMVAKSAFAKHALTR--DHSQIYREYLAVCEGRWGIPQGRIEHPIGRVAEGVDRWTVR 194 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D +PAVT YR L + ++++ TGR HQ+R H AH HP++G Sbjct: 195 PDG--RPAVTEYRILEE-----------NQEWTVLKIHLLTGRTHQIRVHFAHEGHPLVG 241 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 D +G + G + R LHA + HP TGE + + A Sbjct: 242 DPLYG----TKDGR----IARQALHAWTVRFRHPRTGEEILLTA 277 >UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J479_DESRM Length = 303 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 29/228 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L ILY+D L+AVNKP G LVH + + V+ ++ HRLDR TS Sbjct: 84 LNILYEDAHLLAVNKPPGMLVHPLTNETSGTLANGVLYHWLQQGTIDRFRPVHRLDRNTS 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAR 117 G++L+ + + L Q +Q Q +RY A+V+G + E+ V+ P+ E F + Sbjct: 144 GIVLIARNPYVQQQLQIQMKQGQFVRRYLALVKGKVQPEQGVIQAPIALE----EGSFIK 199 Query: 118 EDKGP--QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 P + A++HY+ L T + LV +E +TGR HQ+R H+AH+ HP+ Sbjct: 200 RMISPAGKEAISHYQVLRTF-----------NQASLVRVELETGRTHQVRVHMAHMGHPL 248 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 +GDS +G N ++R LH + L+ HP G + I + Sbjct: 249 LGDSLYGGDTSN--------IKRQALHCAYLAFNHPVQGSRIKISCSV 288 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 115/239 (48%), Gaps = 25/239 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH--VFTAHRLDRPTSG 59 ++ILY+D+ L+ NKP+G +VH + D V + V G+ V HRLD+ TSG Sbjct: 94 IDILYEDDHLLIANKPAGMMVHPIKQETDTLVHALAAVLAARGEQTSVHPVHRLDKDTSG 153 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFARE 118 +L+ SS +L + + I + Y A+ G L E A +D P+ + + E Sbjct: 154 AILVAKSSYGHQLADRLLREGGIHREYLAVASGVLSEGAGTIDAPIGRDARHPTKRRVVE 213 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 PA+THY T E L + +TGR HQ+R H AH+ HP+ GD Sbjct: 214 SG--DPAITHYEVQQTSE-----------EMTLARVWLETGRTHQIRVHFAHIGHPLAGD 260 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 + +G GA L+R LHAS+LS HP + + + A + + M+ L Q +R Sbjct: 261 TMYG-------GARGL-LRRQALHASKLSFLHPLLEKEIVVEAPI-PSDMKRLMQAEFR 310 >UniRef50_B1MWE1 Pseudouridine synthase n=3 Tax=Leuconostoc RepID=B1MWE1_LEUCK Length = 306 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 36/242 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTA---------HR 52 L+I+++++ LV VNKP+G +H + ++ +H+++A HR Sbjct: 87 LDIIFENDDLVVVNKPAGMKMHPHSPSETDTLLNFLAANFS-KRHLYSAGAIAKPYMVHR 145 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKI 111 +DR TSG +++ + +L + ++ IQ+ Y A V+G L++ + +D P+ ++ K Sbjct: 146 IDRETSGAVIVAKNPVVVPILNRMLKEKVIQRTYLAWVQGILLKNSGTIDRPIGRDISK- 204 Query: 112 ADKFAREDKGPQP--AVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 F R+ G Q A TH+ + TV + L+ L+ TGR HQ+R HLA Sbjct: 205 --PFQRQVNGVQAQHAKTHWFKIHTV-----------FQNTLLRLQLDTGRMHQIRVHLA 251 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 + HPI+GDS +G + QR+MLHA L+L PF G I L + + Sbjct: 252 SINHPIVGDSLYG---------QRLNQQRMMLHAMSLTLPLPFDGPKRIITTSLPSDFPK 302 Query: 230 AL 231 L Sbjct: 303 QL 304 >UniRef50_A0L7F8 Pseudouridine synthase n=6 Tax=Proteobacteria RepID=A0L7F8_MAGSM Length = 255 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 18/235 (7%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 +LY+D L+ +NKP+G VH + +R + + AHRLDR TSG L++ Sbjct: 15 LLYRDGLLLIINKPAGIPVHAGPGGGANLEALFGGLRFGLPKAPALAHRLDRDTSGCLVL 74 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDKGP 122 G ++A L + F Q ++QK Y A+V+G + + +D+PL K + +G Sbjct: 75 GRHAKALSKLGKLFSQGKVQKTYWAVVQGGPPQAQGSMDFPLY--------KISTAQQGW 126 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + V +G +++ + GR T + +EL PKTGR HQ+R H AH+ PI GD ++G Sbjct: 127 RMVVDPEQGKSSLTLYRVLGRSATHSW--LELTPKTGRTHQIRVHCAHVGLPIEGDLQYG 184 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 A L LHA Q+ L + P+ + A L Q G+R Sbjct: 185 -------AAPSEPQLTLHLHARQIILPISASKAPINVSAPPPRAMRGLLEQCGYR 232 >UniRef50_C1TRW2 Pseudouridine synthase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRW2_9BACT Length = 305 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 20/207 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L +Y+DE L V+KP+G L D VV + +RLDR TSG++ Sbjct: 79 LVTVYRDESLWVVSKPAGLLSQPDKKGGDS--VVTRAFLPGSSFQPQAVNRLDRNTSGIM 136 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 ++ L+ E+ R L+ ++ +++K Y A+V G L EE +D PL + D ++K + KG Sbjct: 137 VLALTGESLRDLSSRWRDGEMEKVYLALVVGDLPEEGSIDAPLSK--DGSSNKVFVDSKG 194 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q ++T YR LA+ G L+ TGR HQ+R H++H+ HP++GD K+ Sbjct: 195 -QSSLTLYRRLAS------GGGLSLCLVTLI-----TGRSHQIRVHMSHIGHPVLGDVKY 242 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSL 208 GD N G + G +R MLHA +S Sbjct: 243 GDRALN--GVK--GAKRPMLHAFSVSF 265 >UniRef50_B9MS57 Pseudouridine synthase n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MS57_ANATD Length = 293 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 108/212 (50%), Gaps = 28/212 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRS---WLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTS 58 ++ILY+D + + VNKPSG H S + D V + H+ +RLD+ TS Sbjct: 77 IDILYEDNFFLFVNKPSGLPSHPSKGHYFDTIANYVEYYLNSKNLTSHI--INRLDKDTS 134 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFAR 117 G+++ +S +++ +FE+ ++ K Y AIV G L +++ +++ P+ D I + + Sbjct: 135 GIVVFAKNSYFHSIVSYEFEKRRVDKTYIAIVHGILTKKSGLIEKPIKRSDDGIKREIHQ 194 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + A T+Y + + E + +++L+P TGR HQLR HL+ + HPI+G Sbjct: 195 DGSF---ASTYYEVIDSFE-----------NFSVLKLKPITGRTHQLRVHLSSIGHPIVG 240 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLT 209 D +G+ + + L+LHA +S Sbjct: 241 DYIYGEEKTQNTP--------LLLHAYSISFN 264 >UniRef50_C8WV14 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WV14_ALIAD Length = 314 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 19/237 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-HVFTAHRLDRPTSGV 60 + +LY D L+ V+KP LVHR D +Q + ++ G + HRLDR T+G Sbjct: 85 VRVLYNDPSLLVVDKPENLLVHRDGSDAPTLDACVQRLLNEEGAGRAYHVHRLDRGTTGC 144 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 +L R + + ++++ Y AI G + V+ P+ D+ R + Sbjct: 145 VLYAKHGLMLRAMDAELAAGRVRRTYLAIASGTRIRPGVMSAPIGR--DRHVSGRYRVSR 202 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 + A TH L + A R+ LV L +TGR+HQ+R HL+ + P++GD+ Sbjct: 203 TGKVARTHVEVLDEADQGGA-------RWTLVRLRLETGRRHQIRVHLSAMGAPVVGDTL 255 Query: 181 HGDLRQNRSGAEHFGLQ--RLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +G G H L ++ LHA++L HP+ GE + + A L W + + G Sbjct: 256 YG-------GTPHPALAPGQIALHAARLQFCHPYAGEDVEVRAPLPRAWEKLAADVG 305 >UniRef50_B8GX34 Pseudouridine synthase n=7 Tax=Caulobacteraceae RepID=B8GX34_CAUCN Length = 331 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 113/239 (47%), Gaps = 24/239 (10%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 +LY+DE ++A+NKP+G V ++ + + + HRLDR TSGVLL+ Sbjct: 93 VLYEDEEVLALNKPAGLAVQGGTKTTKHIDKLLSAWGEGVDRPRLV-HRLDRDTSGVLLL 151 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK-----FAR 117 G + A L+ F + + QK Y AIV G E V++ L + + D+ Sbjct: 152 GKTPSAAARLSGAFAKRKAQKTYWAIVAGNPHPTEGVMELHLAKR--GVGDRELVVPAQP 209 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 +D QPA T + ++ R + L P TGR HQLR H+ + HPI+G Sbjct: 210 KDPDAQPAETEFVTISRA----------GPRVTWMALRPHTGRTHQLRAHMKAMGHPILG 259 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 D K+GD +S GL +L LHA + L HP G L I A L + +FG+ Sbjct: 260 DPKYGD---EKSAPLSEGL-KLQLHARSILLPHPSAGM-LHIEAPLSPEMKEGFRKFGF 313 >UniRef50_Q0VQA6 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q0VQA6_ALCBS Length = 229 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 112/214 (52%), Gaps = 25/214 (11%) Query: 5 LYQDEWLVAVNKPSGWLV--HRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLL 62 +Y+DE L+ +NKP+ L R+ ++D + +Q Q + HRLD TSG+++ Sbjct: 26 IYRDEHLLLINKPAYLLSVPGRAPENKDCAIRRLQ----QRYPDIRLVHRLDLDTSGIMV 81 Query: 63 MGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFAREDKG 121 GL++ A L++ F+ ++KRY AIV G + + A +D PL+ + K + + G Sbjct: 82 FGLTAFAQSKLSRLFQLRTVKKRYQAIVHGLVEKNAGSIDLPLIADWPKRPLQKVCHETG 141 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + A+THYR L E + R TR + L P TGR HQLR H L HPIIG + Sbjct: 142 -KNALTHYRVL---ERDIPGNR---TR---LALSPVTGRSHQLRIHCRELGHPIIGCDMY 191 Query: 182 GDLRQNRSGAEHFGLQ-RLMLHASQLSLTHPFTG 214 + AE L RL+LHA L+ HP TG Sbjct: 192 -------APAEIEALSPRLLLHAEWLAFNHPLTG 218 >UniRef50_Q2CAH0 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=Q2CAH0_9RHOB Length = 215 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 107/224 (47%), Gaps = 28/224 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-QHVFTAHRLDRPTSGV 60 L +L++D +V V+KP+G L S + E + R Q HRLDR TSGV Sbjct: 12 LAVLHEDHEVVLVDKPAGLL---SVPGKGEHLADCLLARVQAAFPTALLVHRLDRDTSGV 68 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFARED 119 ++ L+ A R L QFE+ Q +K Y A V G + ++ +D PL+ + + + Sbjct: 69 MIFALTPHAQRHLGLQFEKRQTRKTYVARVAGRIADKTGTVDLPLIVDWPNRPKQMVDHE 128 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 G +PAVT +R V TR V L PKTGR HQLR H+ L HPI+GD Sbjct: 129 NG-KPAVTDWR--------VVRASDAETR---VRLFPKTGRSHQLRVHMLALGHPILGDP 176 Query: 180 KH--GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 + G R + R+MLH+ L HP G + I A Sbjct: 177 FYAEGPARAH---------PRMMLHSETLQFRHPDGGRGMRITA 211 >UniRef50_D2QLU1 Pseudouridine synthase n=53 Tax=Bacteroidetes RepID=D2QLU1_9SPHI Length = 248 Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 120/247 (48%), Gaps = 38/247 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFT--AHRL 53 +++Y+D L+ VNK G LV DR + ++ ++D I + VF HRL Sbjct: 6 FQVVYEDNHLLIVNKDPGILVQG---DRTGDITLLDVLKDYIKEKYNKPGEVFLGLVHRL 62 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA--VLDYPLVEELDKI 111 DRP SG+++ +S+A + + F + Q+QK Y A+VR +++ ++++ + +E Sbjct: 63 DRPVSGLVVFARTSKALERMNEIFRKRQVQKTYWAVVRRKPPKDSDKLVNWLIKDEQKNQ 122 Query: 112 ADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 + E Q A YR L + + L+E+ P TGR HQ+R LAH+ Sbjct: 123 VTVYDYEVPKSQKAELSYRVLGKI-----------NEHYLLEVNPITGRPHQIRSQLAHM 171 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFT-----GEPLTIHAGL--D 224 PI GD K+G +R+ A+ +++ LHA +L HP P+ AGL D Sbjct: 172 GCPIRGDIKYG---YDRAVAD----KKIYLHARRLYFIHPIKQAGAEDRPIICKAGLPND 224 Query: 225 DTWMQAL 231 W + L Sbjct: 225 PFWEEFL 231 >UniRef50_Q38Y05 Pseudouridine synthase, 23S-rRNA-specific n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38Y05_LACSS Length = 296 Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 29/237 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR---DQIGQHVFTAHRLDRPTS 58 +L++ + L+ VNKP+G H + E +M V Q G+ + HR+D TS Sbjct: 83 FSVLFESDDLLIVNKPAGIKTHPNR--PGENGTLMNQVAFYLAQQGKKAYMVHRIDEATS 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIV---RGWLMEEAVLDYPLVEELDKIADKF 115 G LL+G + +L +Q Q ++ ++Y AIV + L E A ++ P+ + + + Sbjct: 141 GTLLIGKTPIVIGILNRQLSQKKMARQYIAIVDDPKHELAEHATINSPIGVDPENDRQRC 200 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 G A+THYR L+ R T V+LE TGR HQ+R HLA + HPI Sbjct: 201 VDYING-LSAITHYRVLS---------RKGATAVLAVDLE--TGRTHQIRVHLASIGHPI 248 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +GD + RL+LH L T P+T +P T+ A + D + LS Sbjct: 249 LGDPLYNPTDTT---------PRLLLHGQTLRYTEPYTDQPRTVTAPVPDAFEPYLS 296 >UniRef50_P59831 Ribosomal large subunit pseudouridine synthase A n=20 Tax=Proteobacteria RepID=RLUA_HAEDU Length = 222 Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 111/226 (49%), Gaps = 25/226 (11%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV-VVMQTVRDQIGQHVFTAHRLDRPTSG 59 LE +Y+D +V +NKPSG L +R E VM V+ + G AHRLD TSG Sbjct: 13 FLEEVYRDNHIVVINKPSGLLSVPG--NRPEYYDSVMTRVQQRYG-FAEPAHRLDMATSG 69 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA----VLDYPLVEELDKIADKF 115 ++L+ LS A + L +QF + +K Y A++ G L + +++PL+ + + + Sbjct: 70 IILLALSKVAEKELKRQFRDREPKKHYIALLWGKLGDRVGQTGEINFPLICDWENRPRQK 129 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 ++G + A THY L + TTR V+ P TGR HQLR H L HPI Sbjct: 130 ICYERG-KKATTHYEVLEHLAN-------NTTR---VKFTPITGRSHQLRVHSLALGHPI 178 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 IGD + + RL LHA L++ HP + E +T + Sbjct: 179 IGDKFYANPLAKSLAP------RLCLHAESLTIAHPISAELMTFNT 218 >UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desulfovibrio RepID=B8J173_DESDA Length = 525 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 103/221 (46%), Gaps = 23/221 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV------VMQTVRDQIGQHVFTAHRLDR 55 LE+L+QD+ LV NKP+G VH ++ +V Q R + GQ HRLD+ Sbjct: 80 LELLWQDDHLVVCNKPAGLTVHPCPSCPEQTLVQRLLGRFPQLSRLE-GQRPGIVHRLDK 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVE-ELDKIADK 114 TSG+L++ L+ LA F + Q+ K Y A+V G E PL KI Sbjct: 139 DTSGLLVVALTEADCLALAAAFAERQVHKEYLALVSGLPPLEGQCREPLGRHPTAKIKMA 198 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 ED+G + A T +R L + L+ + TGR HQ+R H+ HL +P Sbjct: 199 VVPEDQGGRNAFTEWRRLWNTD---------DGSVSLLAVRIHTGRTHQIRVHMTHLGYP 249 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGE 215 ++GD R A R MLHA +L THP +GE Sbjct: 250 LLGD------RLYAPKAVQNMAPRQMLHAWRLGFTHPASGE 284 >UniRef50_C7GZU4 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZU4_9FIRM Length = 331 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 36/233 (15%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV-------------FTA 50 ILY+D++++ V+KP+G L H E T+ D+I ++ Sbjct: 108 ILYEDDYIIVVDKPAGLLTHAKGDKSCE-----CTLSDKILEYTEGSLANGSGANRPGVV 162 Query: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDK 110 HRLDR T GV++M + A + L + FE+ ++ K Y AIV ++ ++ + +E K Sbjct: 163 HRLDRGTCGVMVMAKTDTALKHLTEAFEKQEVSKEYEAIVYDNIVRDSGVITAKIERNKK 222 Query: 111 IADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 K + D+G + A E V R+ Y V L K+GR HQ+R H+ + Sbjct: 223 NRLKMSAGDEGRE---------AHTEFKVIE-RFGKFTY--VSLVIKSGRTHQIRVHMNY 270 Query: 171 LRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 + HP++GD +G + + F L ML + ++ HP T E + A + Sbjct: 271 IHHPVLGDMLYGKRK------DKFNLMWPMLRSKKIGFLHPITSEKMEFTAAM 317 >UniRef50_UPI00016C4782 RNA pseudouridylate synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4782 Length = 275 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 113/230 (49%), Gaps = 34/230 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQT--VRDQIGQHVFTAHRLDRPTSG 59 LEI+++D LV ++KPSG L + ++ + V + +R + F HRLDR TSG Sbjct: 62 LEIVHEDAHLVVIDKPSGLLTVATESEKLDTAFVRLSDYLRARNAGRPFVVHRLDRDTSG 121 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW--LMEEAVLDYPLVEELDKIADKFAR 117 +LL S+E L +E+ + K Y A+V G E V +Y L E D R Sbjct: 122 LLLFARSAEVRDQLQGNWEE--LTKTYLAVVEGRPESSEGGVENY-LTEGRD------LR 172 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPT--TR--YGLVELEPKTGRKHQLRRHLAHLRH 173 P+P R A RY TR Y LVE+E +TGRKHQ+R HLA L Sbjct: 173 VRASPRPGPDGKR---------AASRYTVRQTRGGYSLVEVEIETGRKHQIRVHLAGLGC 223 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 P+ GD + GA ++RL LHA +LS HPFT E L + A L Sbjct: 224 PVAGDKMY--------GATTDPVRRLGLHAWRLSFDHPFTLERLELEAPL 265 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q47417 tRNA pseudouridine synthase C n=252 Tax=cellular... 360 3e-98 UniRef50_Q8DBG5 tRNA pseudouridine synthase C n=54 Tax=Gammaprot... 316 6e-85 UniRef50_B8CQ92 Pseudouridine synthase n=1 Tax=Shewanella piezot... 310 3e-83 UniRef50_Q30SZ1 Pseudouridine synthase n=2 Tax=Proteobacteria Re... 304 2e-81 UniRef50_Q15QZ8 Pseudouridine synthase n=5 Tax=Bacteria RepID=Q1... 299 8e-80 UniRef50_Q39Z12 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 298 1e-79 UniRef50_C5TPY8 Pseudouridine synthase n=6 Tax=Proteobacteria Re... 297 2e-79 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 297 2e-79 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 296 4e-79 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 294 2e-78 UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 293 3e-78 UniRef50_C4KBT4 Transaldolase n=2 Tax=Proteobacteria RepID=C4KBT... 293 6e-78 UniRef50_C0Q9S8 TruC n=1 Tax=Desulfobacterium autotrophicum HRM2... 291 1e-77 UniRef50_A3HSB5 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 290 4e-77 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 288 1e-76 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 288 1e-76 UniRef50_C8PZW5 Pseudouridine synthase n=1 Tax=Enhydrobacter aer... 286 4e-76 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 286 6e-76 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 286 6e-76 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 286 6e-76 UniRef50_A1K5H7 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 284 1e-75 UniRef50_UPI0001AEC02F pseudouridylate synthase, 23S RNA-specifi... 284 2e-75 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 284 2e-75 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 284 2e-75 UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D... 284 2e-75 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 283 3e-75 UniRef50_Q31IZ8 Pseudouridine synthase n=2 Tax=Proteobacteria Re... 283 4e-75 UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepI... 283 6e-75 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 282 7e-75 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 282 9e-75 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 281 1e-74 UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D... 280 2e-74 UniRef50_A4BJ00 Pseudouridine synthase n=1 Tax=Reinekea blandens... 279 4e-74 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 279 4e-74 UniRef50_A1U2H1 Pseudouridine synthase n=1 Tax=Marinobacter aqua... 279 5e-74 UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 278 1e-73 UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D... 278 1e-73 UniRef50_A6VXE8 Pseudouridine synthase n=2 Tax=Marinomonas RepID... 278 1e-73 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 278 2e-73 UniRef50_Q1N5G6 Pseudouridine synthase n=1 Tax=Bermanella marisr... 278 2e-73 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 277 2e-73 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 277 2e-73 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 276 5e-73 UniRef50_B4RVP9 Pseudouridine synthase n=1 Tax=Alteromonas macle... 276 5e-73 UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 276 6e-73 UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 ... 275 9e-73 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 275 1e-72 UniRef50_D2QPA6 Pseudouridine synthase n=1 Tax=Spirosoma lingual... 274 2e-72 UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacte... 274 2e-72 UniRef50_A9BZ16 Pseudouridine synthase n=9 Tax=Burkholderiales R... 274 2e-72 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 274 2e-72 UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium ca... 274 2e-72 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 273 5e-72 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 273 6e-72 UniRef50_B5JL25 Pseudouridine synthase n=1 Tax=Verrucomicrobiae ... 273 6e-72 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 272 8e-72 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 272 8e-72 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 271 1e-71 UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus sa... 271 2e-71 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 271 2e-71 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 271 2e-71 UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 271 2e-71 UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae R... 270 3e-71 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 270 3e-71 UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=... 270 3e-71 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 270 4e-71 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 269 4e-71 UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q... 269 6e-71 UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae Rep... 269 6e-71 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 269 6e-71 UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q... 269 6e-71 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 269 7e-71 UniRef50_C6VVP1 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 269 8e-71 UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turg... 268 1e-70 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 268 2e-70 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 268 2e-70 UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 267 3e-70 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 267 3e-70 UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus... 267 3e-70 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 267 4e-70 UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 266 4e-70 UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 266 4e-70 UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID... 266 4e-70 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 266 5e-70 UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 266 6e-70 UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desu... 266 7e-70 UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botul... 266 7e-70 UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 265 1e-69 UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 265 1e-69 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 265 1e-69 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 265 1e-69 UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacte... 264 1e-69 UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria R... 264 2e-69 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 264 2e-69 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 263 3e-69 UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. ... 263 3e-69 UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C... 263 3e-69 UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria R... 263 7e-69 UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 262 9e-69 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 262 1e-68 UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=... 262 1e-68 UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=... 262 1e-68 UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 261 1e-68 UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibri... 261 1e-68 UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 261 2e-68 UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepI... 261 2e-68 UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT ... 260 3e-68 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 260 3e-68 UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Vict... 260 3e-68 UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D... 260 3e-68 UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacte... 260 3e-68 UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D... 260 4e-68 UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. J... 259 4e-68 UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 259 5e-68 UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 259 6e-68 UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nos... 259 6e-68 UniRef50_C7LP91 Pseudouridine synthase n=1 Tax=Desulfomicrobium ... 259 7e-68 UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobact... 259 8e-68 UniRef50_Q1QTG8 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 259 8e-68 UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=... 259 9e-68 UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C... 258 1e-67 UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4... 258 1e-67 UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter pi... 258 1e-67 UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium R... 258 2e-67 UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C... 257 2e-67 UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desu... 257 3e-67 UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=... 257 3e-67 UniRef50_B0RLZ1 Pseudouridine synthase n=13 Tax=Xanthomonadaceae... 257 3e-67 UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 257 4e-67 UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus ole... 256 4e-67 UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 256 5e-67 UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=... 256 5e-67 UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capil... 256 6e-67 UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. M... 256 7e-67 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 255 9e-67 UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytop... 255 1e-66 UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeu... 255 1e-66 UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 255 1e-66 UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix o... 255 1e-66 UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 255 1e-66 UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organi... 254 1e-66 UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=... 254 2e-66 UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus Rep... 254 2e-66 UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pire... 254 2e-66 UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae ... 254 2e-66 UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 254 2e-66 UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desu... 254 2e-66 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 254 3e-66 UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjun... 253 4e-66 UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C... 253 4e-66 UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D... 253 4e-66 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 253 5e-66 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 252 5e-66 UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepI... 252 6e-66 UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=... 252 6e-66 UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C... 252 9e-66 UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=... 252 1e-65 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 251 1e-65 UniRef50_C9M5C8 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 251 2e-65 UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID... 251 2e-65 UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacteriu... 251 2e-65 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 251 2e-65 UniRef50_A9B3Z2 Pseudouridine synthase n=1 Tax=Herpetosiphon aur... 251 2e-65 UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 251 2e-65 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 251 2e-65 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 250 3e-65 UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 250 4e-65 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 250 4e-65 UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID... 250 4e-65 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 250 4e-65 UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 249 5e-65 UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 249 5e-65 UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Ther... 249 5e-65 UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales Re... 249 6e-65 UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii... 248 1e-64 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 248 1e-64 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 248 1e-64 UniRef50_B5YAZ5 Pseudouridine synthase n=2 Tax=Dictyoglomus RepI... 247 2e-64 UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO ... 247 3e-64 UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 246 4e-64 UniRef50_C0N6T7 Pseudouridine synthase n=1 Tax=Methylophaga thio... 246 5e-64 UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia R... 246 5e-64 UniRef50_C5S931 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 246 6e-64 UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Ta... 246 6e-64 UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae R... 246 7e-64 UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID... 245 9e-64 UniRef50_A3Y8C6 Pseudouridine synthase n=1 Tax=Marinomonas sp. M... 245 1e-63 UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 245 1e-63 UniRef50_A6DMG7 tRNA pseudouridine synthase n=1 Tax=Lentisphaera... 244 2e-63 UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID... 244 2e-63 UniRef50_A2U235 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 244 2e-63 UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae... 244 2e-63 UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus Rep... 243 3e-63 UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 243 4e-63 UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gard... 242 6e-63 UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae Re... 242 8e-63 UniRef50_Q28US1 Pseudouridine synthase n=43 Tax=Rhodobacterales ... 242 9e-63 UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B... 242 1e-62 UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 241 1e-62 UniRef50_B1YJB1 Pseudouridine synthase n=1 Tax=Exiguobacterium s... 241 1e-62 UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydr... 241 2e-62 UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D... 241 2e-62 UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprof... 241 2e-62 UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales Rep... 241 2e-62 UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whippl... 241 2e-62 UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 241 2e-62 UniRef50_A1WTN6 Pseudouridine synthase n=2 Tax=Ectothiorhodospir... 241 3e-62 UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Baci... 240 3e-62 UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2... 240 3e-62 UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Plan... 240 3e-62 UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales R... 240 3e-62 UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID... 240 4e-62 UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 240 5e-62 UniRef50_Q21K97 Pseudouridine synthase n=10 Tax=Gammaproteobacte... 239 5e-62 UniRef50_C5WJF2 Pseudouridine synthase n=104 Tax=Lactobacillales... 239 5e-62 UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 239 6e-62 UniRef50_A5VJ18 Pseudouridine synthase, RluA family n=13 Tax=Lac... 239 6e-62 UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 239 6e-62 UniRef50_A5ZQM9 Putative uncharacterized protein n=1 Tax=Ruminoc... 239 6e-62 UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostri... 239 6e-62 UniRef50_D1W0M0 Pseudouridine synthase n=1 Tax=Prevotella timone... 239 7e-62 UniRef50_B0TDX6 Pseudouridine synthase, rlua family n=1 Tax=Heli... 239 9e-62 UniRef50_Q0BUM2 Pseudouridine synthase n=12 Tax=Acetobacteraceae... 239 1e-61 UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochm... 239 1e-61 UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A... 238 1e-61 UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 238 1e-61 Sequences not found previously or not previously below threshold: UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=... 274 2e-72 UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium... 273 3e-72 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 273 5e-72 UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria Re... 271 1e-71 UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 269 5e-71 UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM... 258 2e-67 UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 257 3e-67 UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 256 6e-67 UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacter... 255 9e-67 UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacte... 254 2e-66 UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protoc... 253 3e-66 UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ... 251 1e-65 UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio ace... 250 3e-65 UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. S... 250 3e-65 UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta... 249 8e-65 UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q... 248 1e-64 UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermace... 248 1e-64 UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 247 4e-64 UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 246 6e-64 UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clos... 245 9e-64 UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales Re... 244 2e-63 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 242 8e-63 UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D... 240 3e-62 UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 240 4e-62 >UniRef50_Q47417 tRNA pseudouridine synthase C n=252 Tax=cellular organisms RepID=TRUC_PECCC Length = 376 Score = 360 bits (925), Expect = 3e-98, Method: Composition-based stats. Identities = 182/257 (70%), Positives = 209/257 (81%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEI+YQDE LVAVNKPSGWLVHRSWLDR EKVVVMQTVRDQIGQHV+T HRLDRPTSGV Sbjct: 115 MLEIIYQDEHLVAVNKPSGWLVHRSWLDRKEKVVVMQTVRDQIGQHVYTVHRLDRPTSGV 174 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 LL+ LSSE R L+QQFE HQ+QK YHA+VRG+++++ V+DY L EELDKIADKF DK Sbjct: 175 LLLALSSEVARALSQQFESHQMQKTYHAVVRGYVLDDGVIDYALTEELDKIADKFTNPDK 234 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQPAVTHYR LA EMPVA GRYPT RY L+EL+P+TGRKHQLRRH++H+ HPIIGD+ Sbjct: 235 APQPAVTHYRSLAQAEMPVAIGRYPTARYSLMELKPQTGRKHQLRRHMSHIHHPIIGDTA 294 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 HGDLR NR HF RLMLHAS+L L HP +G+PLT+ A D W ++QFGW+G+L Sbjct: 295 HGDLRHNRGMESHFSCGRLMLHASELQLNHPVSGQPLTLQARWDAPWQGVVTQFGWKGIL 354 Query: 241 PENERVEFSAPSGQDGE 257 PE E VEF A SGQD E Sbjct: 355 PEFEGVEFPADSGQDSE 371 >UniRef50_Q8DBG5 tRNA pseudouridine synthase C n=54 Tax=Gammaproteobacteria RepID=TRUC_VIBVU Length = 245 Score = 316 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 143/240 (59%), Positives = 175/240 (72%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEI+YQDE+ VAVNKP+G LVHRSWLD+ E VMQT+RDQIGQHVF HRLDRPTSGV Sbjct: 1 MLEIVYQDEYFVAVNKPAGMLVHRSWLDKHETQFVMQTLRDQIGQHVFPLHRLDRPTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L+ LSSE + F ++ K YHAIVRGW+ EE LDY L ELDKIADKFA ++K Sbjct: 61 LVFALSSEVASQVMPMFAGQEMSKTYHAIVRGWIEEEGELDYALKVELDKIADKFASQEK 120 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 Q A+T Y+ LA VE+P +T ++PTTRYGL+EL+PKTGRKHQLRRH+AHLRHPI+GD+ Sbjct: 121 EAQDAITLYKPLAKVEVPYSTSKFPTTRYGLMELKPKTGRKHQLRRHMAHLRHPIVGDTT 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 HGD + N+ E F RL+LHAS+L HP+T + + I A +D W Q +F W L Sbjct: 181 HGDGKHNKLFREEFDAPRLLLHASELRFVHPYTQQEVVIRAEVDKVWQQLFERFEWPSTL 240 >UniRef50_B8CQ92 Pseudouridine synthase n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CQ92_SHEPW Length = 278 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 126/235 (53%), Positives = 160/235 (68%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +EIL++D+ +VA++KP+G LVHRS+L R E+ MQ RD++G HVF HRLDRPTSG+L Sbjct: 27 IEILFEDDDVVAIHKPAGLLVHRSYLARRERFFAMQLTRDKVGCHVFPVHRLDRPTSGIL 86 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L SSE L +QF H I K Y AIVRG + E A LDY L EELD +ADK +K Sbjct: 87 LFAKSSEMANALCEQFAAHSIDKEYLAIVRGNMHEAATLDYALKEELDDVADKDVDPNKA 146 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A+T Y+ L E+P A+GRY T+RY LV L P TGRKHQLRRH+AHLRHPI+GD+ H Sbjct: 147 AQDAITSYKPLLNSEIPYASGRYATSRYALVHLSPHTGRKHQLRRHMAHLRHPILGDTTH 206 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD +QN+ EHFG+ RL L A +LS HP TGE + + L+ W+ + GW Sbjct: 207 GDGKQNKFFREHFGINRLWLIAKKLSFNHPRTGERVAVETELEQEWITLFDELGW 261 >UniRef50_Q30SZ1 Pseudouridine synthase n=2 Tax=Proteobacteria RepID=Q30SZ1_SULDN Length = 241 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 122/236 (51%), Positives = 166/236 (70%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILYQDE LVA+NKPSG LVHRS +DR E +QT+R+Q+G+ V+ HRLD+PTSGV Sbjct: 1 MLEILYQDEHLVAINKPSGLLVHRSPIDRHETEFAIQTLRNQLGRFVYPIHRLDKPTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 LL L E+ +++ ++F H+ +K Y A+VRG+ ++ +DY L + DKIADK + DK Sbjct: 61 LLFALDKESAKIMGEKFMAHEAKKSYIAVVRGYTLQSGEIDYALSIKFDKIADKDSSSDK 120 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQ A+THY+ LATVE+ G+Y TRY LV+L P TGRKHQLRRH+ H+ H I+GD+K Sbjct: 121 EPQEALTHYKRLATVELDFEVGKYDKTRYSLVKLNPLTGRKHQLRRHMKHISHHILGDTK 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 +G N+ + FG R++LHA L ++HP+T E L I A LD T+++ S FGW Sbjct: 181 YGRGEHNKLIRQEFGCHRMLLHAIALEISHPYTKELLYIKAPLDVTFIEMFSFFGW 236 >UniRef50_Q15QZ8 Pseudouridine synthase n=5 Tax=Bacteria RepID=Q15QZ8_PSEA6 Length = 252 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 129/251 (51%), Positives = 163/251 (64%), Gaps = 2/251 (0%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L ILYQDE LVA++KP+G LVHRS +DR E MQ +RDQIGQHVF HRLDRPTSGVL Sbjct: 3 LTILYQDECLVAIHKPAGLLVHRSMIDRHETQFAMQMLRDQIGQHVFPVHRLDRPTSGVL 62 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 + LS++ RLL +QF + I K Y AIVRG + E ++DY L E+LDKIADK A++DK Sbjct: 63 VFALSADIARLLGEQFAGNTIAKTYFAIVRGHVKEAGLIDYALKEKLDKIADKRAKQDKD 122 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A T Y L E+P A RYP+ RY LV L PKTGRKHQLRRH+ H+ HPI+GD+ H Sbjct: 123 AQEAQTEYVPLQQFELPFAVSRYPSARYTLVRLHPKTGRKHQLRRHMCHINHPIVGDTTH 182 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLP 241 GD + N+ + F L L Q+ +THP + E L I D + Q+GW LP Sbjct: 183 GDGKHNKFMRDQFSFNGLALTCQQMCMTHPVSNEKLAIVNDFDQRMSTLMVQWGWE--LP 240 Query: 242 ENERVEFSAPS 252 +R++ + S Sbjct: 241 SLDRLDLLSNS 251 >UniRef50_Q39Z12 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=Q39Z12_GEOMG Length = 270 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 123/242 (50%), Positives = 160/242 (66%), Gaps = 1/242 (0%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +EILY+DE LVAV+KP G LVHRS +DR E +Q VRD +G+ V+ HRLD+PTSGVL Sbjct: 1 MEILYRDEHLVAVHKPLGLLVHRSPIDRHETRFALQEVRDLLGRRVYPVHRLDKPTSGVL 60 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE-DK 120 L L R L F + K Y A+VRG + EE V+D+PL EE D+ ++ Sbjct: 61 LFALDPAFARGLVGAFASGSVTKTYLAVVRGTMPEEGVIDHPLAEEPDRFEQGRGNAGER 120 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQ AVT YR LA VE+PVA GRYPT+RY LV L P+TGR+HQLRRHL HL HPI+GD+K Sbjct: 121 APQSAVTGYRRLADVELPVAVGRYPTSRYSLVSLSPRTGRRHQLRRHLKHLFHPIVGDTK 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 +G+ R NR E R++LHA +L++ HP TG PLT+ A ++ + L++FGW + Sbjct: 181 YGEGRHNRFFREELLTVRMLLHAVELTVPHPATGAPLTVCAPVEGAFAALLARFGWLSAV 240 Query: 241 PE 242 P Sbjct: 241 PS 242 >UniRef50_C5TPY8 Pseudouridine synthase n=6 Tax=Proteobacteria RepID=C5TPY8_NEIFL Length = 264 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 127/235 (54%), Positives = 161/235 (68%), Gaps = 3/235 (1%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 ML+I+++D +AVNKP+G LVHRSWLD+ E +QT+RDQIGQHV+ HRLDRPTSGV Sbjct: 27 MLDIIHRDSRTIAVNKPAGMLVHRSWLDKHETRFAVQTLRDQIGQHVYPVHRLDRPTSGV 86 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 LL L +EA RLL QQFE I+K Y AIVRG+L + ++DY L DKIA+ A+ + Sbjct: 87 LLFALDTEAARLLTQQFENKTIEKTYWAIVRGYLPSDGLIDYALKYMPDKIAE--AQTEA 144 Query: 121 GPQPAVTHYRGLATVEMPVATG-RYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 Q A T YR LA E+P + RYPT+RY EL P TGRKHQLRRH+ H+ HPI+GD+ Sbjct: 145 TLQEAQTAYRCLAQTELPFQSALRYPTSRYSWAELTPYTGRKHQLRRHMKHIFHPIVGDT 204 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +GDLRQN + AEH G QRLMLHA LS G +T++A D+ W + +F Sbjct: 205 NYGDLRQNHAVAEHIGTQRLMLHARSLSFQSIEDGSRITVNAPTDNDWRLWMEKF 259 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 125/251 (49%), Gaps = 27/251 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 LEI++QD + +NKP+G +VH + +V ++ ++D G HR+D+ Sbjct: 112 LEIIFQDADIAVINKPAGLVVHPAEGHWSGTLVNALLYHIKDLSGINGELRPGIVHRIDK 171 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 TSG+L++ + A L +Q + H++++ Y A+V G + E ++ P+ + Sbjct: 172 DTSGLLVVAKNDRAHIHLTEQVKDHRVRREYLAVVHGVIGAETGRVEAPIGRDPKDRQRM 231 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 G + A+TH+R LA RYP + L+ +TGR HQ+R HLAH+ HP Sbjct: 232 AVI--AGGKSAITHFRVLA---------RYPEQGFSLLHCRLETGRTHQIRVHLAHIGHP 280 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + GD K+G + FGL LHA +L HP +GEP+ A + ++Q L Sbjct: 281 VAGDPKYGPRKA------AFGLTGQALHAWKLEFVHPRSGEPMRFQADPPEPFVQVLQAL 334 Query: 235 GWRGLLPENER 245 + P N+R Sbjct: 335 Q---MTPTNQR 342 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 26/243 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 L ++Y+D ++ +NKP G +VH + D +V ++ D G HR+D+ Sbjct: 80 LNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVNGLLWHCHDLSGINGVLRPGIVHRIDK 139 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG+++ + A + LA+Q + ++Y+A+V G + E +D P+ + +K K Sbjct: 140 DTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYALVHGVINHEYGTIDAPIGRD-EKDRQK 198 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A +K +PA+TH++ + + Y LV +TGR HQ+R H+ ++ P Sbjct: 199 MAVTEKNSRPAITHFKVVERFD-----------NYTLVSCRLETGRTHQIRVHMQYIGFP 247 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 I+GD K+ S + Q MLHA QLS THP TGE +T A L + L+Q Sbjct: 248 IVGDPKY-------SLRKTLPTQGQMLHAYQLSFTHPSTGERMTFEAPLPPEFEALLTQL 300 Query: 235 GWR 237 Sbjct: 301 RQE 303 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 25/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L+I+Y+DE LV VNK +G +VH + + D +V Q HRLD+ Sbjct: 82 LDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHCQNLSGIGGVLRPGIVHRLDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG+L++ + A + LA+Q ++ + + Y IV G+L +E ++D P+ + K Sbjct: 142 DTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLKNKEGIIDLPIGRHP-RDRQK 200 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A G + A T Y+ L + L++ + TGR HQ+R H ++L HP Sbjct: 201 MAVVSNG-KTAQTVYKVLEEF----------NKGFTLIQAKLLTGRTHQIRVHFSYLGHP 249 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD K+G FG++R MLHA +LS HP +GE L A L + + + L++ Sbjct: 250 VLGDPKYGHQ------NNPFGVKRQMLHAIKLSFIHPRSGELLEFTAPLPEDFQRVLAKL 303 >UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFD0_LIBAP Length = 340 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 61/257 (23%), Positives = 123/257 (47%), Gaps = 27/257 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG-----QHVFTAHRLD 54 L+ILY+D+ ++ +NKP+G +VH + + +V ++ + + + HRLD Sbjct: 90 LDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLD 149 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQH----QIQKRYHAIVRGWL-MEEAVLDYPLVEELD 109 + T+GV+++ + A + L++QF H ++++ Y+A+V G + +++ PL Sbjct: 150 KDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKS 209 Query: 110 KIADKFAR--EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 + + +DK A+THY+ + + L++ +TGR HQ+R H Sbjct: 210 NRLRRAVKGIDDKTADSAITHYQTIE------IYNKNSNFAVSLLKCHLETGRTHQIRVH 263 Query: 168 LAHLRHPIIGDSKHGDLRQ-------NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH 220 +AH +P+IGD +G + N + + L R LHA LS +HP + + Sbjct: 264 MAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQ 323 Query: 221 AGLDDTWMQALSQFGWR 237 + + + + + + Sbjct: 324 VPIPEDMLTVIRKLNEK 340 >UniRef50_C4KBT4 Transaldolase n=2 Tax=Proteobacteria RepID=C4KBT4_THASP Length = 648 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 124/272 (45%), Positives = 164/272 (60%), Gaps = 24/272 (8%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILY+D+WLVA++KPSG LVHRS + E+ +Q +RDQ+G+ V+ AHRLDR TSGV Sbjct: 1 MLEILYRDDWLVAIHKPSGLLVHRSPIAAHEERFAVQLLRDQLGRRVYPAHRLDRGTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAR--- 117 LL L E R LAQ+FE + KRY A+VRG E V+++ LV LD + + + Sbjct: 61 LLFALDREVARTLAQRFEAQAVDKRYLAVVRGHPPEHGVIEHALVRRLDAVEVRSGKGAG 120 Query: 118 -----------------EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR 160 + QPA T +R LATVE+P A RYP++RY LVEL P+TGR Sbjct: 121 ARDALPEDVDDSDSPEAAEPVAQPARTRFRRLATVELPHAVDRYPSSRYALVELLPETGR 180 Query: 161 KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH 220 +HQLRRHL H+ HPIIGD+ +G R NR FG RL+L ++L+L HP T PL I Sbjct: 181 RHQLRRHLKHIAHPIIGDATYGKGRHNRLFQALFGSHRLLLACTRLALAHPVTERPLEIV 240 Query: 221 AGLDDTWMQALSQFGWRGLLPENERVEFSAPS 252 A + + + L+ GW+ +R F A S Sbjct: 241 APVAEDFAAVLAALGWQ----TAQRSTFEAES 268 >UniRef50_C0Q9S8 TruC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9S8_DESAH Length = 260 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 113/244 (46%), Positives = 140/244 (57%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEILYQDE LVAVNKP G LVHR+ L E +Q VRDQ HVF HRLDRPT GVL Sbjct: 13 LEILYQDEDLVAVNKPPGLLVHRTALATHETRFALQMVRDQTQGHVFPVHRLDRPTQGVL 72 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L + ++ F+ +IQK Y A+VRG + E + +PL +K Sbjct: 73 LFARNRNMATRMSHLFQTGKIQKTYLAVVRGHVKERGTIVHPLKNIKHPQDNKRINHSLK 132 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 AVT Y LA+VE+P RYPTTRY LV L PKTGR+HQLRRH+ H+ HPI+GD+ + Sbjct: 133 IDDAVTDYACLASVELPFYVDRYPTTRYCLVALIPKTGRRHQLRRHMKHISHPIVGDTVY 192 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLP 241 G NR A H L+L A +L HP TG +TI A LD + + +S+F W Sbjct: 193 GKSSHNRFFATHLNCTGLLLAARELCFVHPDTGIFITITAPLDKRFQEVISKFSWDEPTK 252 Query: 242 ENER 245 E R Sbjct: 253 ELPR 256 >UniRef50_A3HSB5 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HSB5_9SPHI Length = 237 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 105/243 (43%), Positives = 143/243 (58%), Gaps = 12/243 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L IL++D+ ++A+NKP+G LVHR+ + E V +Q +RDQIG HV HRLDRPTSG+L Sbjct: 3 LPILFEDDSIIAINKPAGLLVHRTSIAAQETVFALQILRDQIGMHVHPVHRLDRPTSGIL 62 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAREDK 120 L E L F + QI+K Y IVRG ++A++D+PL E Sbjct: 63 LFAKKEEILPHLKNLFSERQIKKNYLTIVRGIPEQKKALIDHPLKSERSGRL-------- 114 Query: 121 GPQPAVTHYRGLATVEMPV-ATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 Q A T Y+ ++ E+P TGRYPT+RY L+ + P+TGR HQ+RRHLAH+RH IIGD Sbjct: 115 --QEAQTWYKVISETEIPFDTTGRYPTSRYSLLSVNPETGRTHQIRRHLAHIRHYIIGDK 172 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGL 239 KHGD +QN FGL+ L+LHA +LS HP T E + I + + + L + Sbjct: 173 KHGDNKQNIFFQNQFGLENLLLHAIRLSFNHPITEETIEISCPVPEHFQSILKSLNLQEP 232 Query: 240 LPE 242 L Sbjct: 233 LIS 235 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 28/244 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV--MQTVRDQIGQ----HVFTAHRLDR 55 +EI+Y+D L +NK +G +VH + +V + ++D G HRLD+ Sbjct: 99 IEIIYEDNDLAVINKKAGIVVHPANGHYSGTLVNAILYHIKDLSGINGEIRPGIVHRLDK 158 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG+L++ + +A L+Q F ++K Y AI++G L ++ + + + + Sbjct: 159 DTSGLLIIAKNDKAHLKLSQMFHDKTVKKIYLAILKGKLNQKSGRIVTQIGRDKNDRKKM 218 Query: 115 FARED-KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 D + A+T+Y ++ E ++ LV++ +TGR HQ+R H+ HL + Sbjct: 219 TVINDLNSGKTAITNYEVISQTE-----------KFTLVKVHIETGRTHQIRVHMKHLGY 267 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GDS +G +R MLHA +L HP T E L A L + + +AL + Sbjct: 268 PILGDSVYGRTDTE---------KRQMLHAYKLEFQHPITEENLEFIAKLPEDFKKALKK 318 Query: 234 FGWR 237 G Sbjct: 319 CGLE 322 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 21/243 (8%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDRPTS 58 +Y+D+ L+ ++KP G +VH + + +V ++ R+ G HRLD+ TS Sbjct: 98 IYEDDSLLVLSKPPGIVVHPGNGNTEGTLVHGLLYHCREIGGVGDAIRPGIVHRLDKDTS 157 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G +++ + R L F++ Q+ K YHA+V G + E + P+ K A Sbjct: 158 GAMVVAKDERSLRTLVDSFKERQVYKVYHALVCGIPKKYEGRIVAPIGRHSVH-RQKMAI 216 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 ++ + A T+++ + E Y L+ + +TGR HQ+R H++ + PI G Sbjct: 217 SERTGKFAATNWQVVEVFET-------KDGPYSLLRVHIETGRTHQIRVHMSSIGCPIAG 269 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 D +G RQN + A R MLHAS+L L HP TG ++ A L + + L W Sbjct: 270 DQVYGSKRQNPAFA------RQMLHASRLRLPHPVTGRTMSFTAPLWQDFQEVLEDMDWS 323 Query: 238 GLL 240 G L Sbjct: 324 GAL 326 >UniRef50_C8PZW5 Pseudouridine synthase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZW5_9GAMM Length = 266 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 134/264 (50%), Positives = 164/264 (62%), Gaps = 27/264 (10%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILYQDE VAVNKP+G LVHRSWLDR E VMQT+RDQ+ Q+V+ HRLDRPTSGV Sbjct: 1 MLEILYQDEHCVAVNKPAGMLVHRSWLDRHETEFVMQTLRDQLAQYVYPIHRLDRPTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM----EEAVLDYPLVEELDKIADK-- 114 LL LSSE+ R L +QFE Q+QK Y AIVRG+L ++DYPL + LDKI DK Sbjct: 61 LLFALSSESARQLCEQFENRQVQKSYLAIVRGYLTVNAQTSGLIDYPLTQILDKIGDKPS 120 Query: 115 --------FAREDKGP------------QPAVTHYRGLATVEMPV-ATGRYPTTRYGLVE 153 + D QPA TH++ LAT E P A RYPT+R+ L Sbjct: 121 LQALQQRKVSSTDMFAEALSSPAELTLLQPAQTHWQCLATTEQPFQARARYPTSRFSLAR 180 Query: 154 LEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFT 213 L P TGRKHQLRRH+ H+ HPIIGD+ +GD QNR+ +H G+ RLMLHA L+ Sbjct: 181 LTPITGRKHQLRRHMKHVFHPIIGDTSYGDHHQNRAIRQHIGVHRLMLHAHTLAFNRLTD 240 Query: 214 GEPLTIHAGLDDTWMQALSQFGWR 237 + I A +D W+ +QFG+ Sbjct: 241 NRRVDITAPVDTDWLTMCAQFGFH 264 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 22/241 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ-----HVFTAHRLD 54 L+ILY+DE ++ +NKP G +VH + +V +M RD + HR+D Sbjct: 99 LDILYEDEDVILINKPKGMVVHPAAGHYTGTLVNALMYHCRDNLSGINGELRPGIVHRID 158 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 T+GV++ + + R++A+Q ++H I+++Y AIV G EE ++ + Sbjct: 159 MDTTGVIIACKNDVSHRIIAEQLKEHSIKRKYQAIVYGVFKDEEGRIEGSIGRSKTDRKK 218 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 D +PAVTHYR + P + +E E +TGR HQ+R H+ + H Sbjct: 219 MAVIPD--GKPAVTHYRVIRNYTSPN------GNNFAHIECELETGRTHQIRVHMTSIGH 270 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++GD +G + F L LHA L HP TGE + HA L + + + L++ Sbjct: 271 PLLGDEIYG------AAKNPFKLDGQALHAEMLGFVHPRTGEYMEFHAPLPEYFSKLLTK 324 Query: 234 F 234 Sbjct: 325 L 325 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 286 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 75/258 (29%), Positives = 115/258 (44%), Gaps = 23/258 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG----QHVFTAHRLDR 55 L+ILY+DE +V +NK SG +VH + + D +V ++ D G + HRLD+ Sbjct: 77 LDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHCGDLSGIGGVERPGIVHRLDK 136 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADK 114 TSG L++ + A + L QF +KRY A+V+G + + + Sbjct: 137 DTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQGIPSQSSGTVFTHIGRHPVNRLKM 196 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A+T Y L P+T LV TGR HQ+R H+ +L HP Sbjct: 197 AVVNPGSGKAAITDYDLLCAD---------PSTDSSLVLCTLHTGRTHQIRVHMLYLGHP 247 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +IGD + + ++ RLMLHA +L HP TG+ + A + + L F Sbjct: 248 LIGDPIYAKPARQKAKP-----GRLMLHAWRLGFDHPRTGKRMDFEAPVPPEYTPWLQLF 302 Query: 235 --GWRGLLPENERVEFSA 250 G G +PE V+ Sbjct: 303 PNGLYGAIPELRPVQEDG 320 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 286 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 109/242 (45%), Gaps = 24/242 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-----HVFTAHRLDRP 56 L+++Y+D + +NKP+G +VH + +V R HRLDR Sbjct: 91 LDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPDLAIGGELRPGIVHRLDRD 150 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 TSG+L++ +A R L Q + +++K Y A+V G E +D P+ + Sbjct: 151 TSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRPPETGTIDAPIGRDPRDRLRMAV 210 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 D +PA THYR L T Y L+E++ +TGR HQ+R HL HL +PI+ Sbjct: 211 VPD--GRPARTHYRLLDTF-----------GDYSLLEVQLETGRTHQIRVHLRHLGYPIV 257 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD +G R H L R LHA+ L L HP +G A L L Q Sbjct: 258 GDPVYGPRRS------HLHLSRQFLHAAYLGLVHPRSGRWQEFTAPLPADLQIVLRQLQD 311 Query: 237 RG 238 R Sbjct: 312 RA 313 >UniRef50_A1K5H7 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A1K5H7_AZOSB Length = 260 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 117/256 (45%), Positives = 154/256 (60%), Gaps = 3/256 (1%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILYQDE LVA++KPSG LVHRS LD E+ +Q +RDQ+G+HV HRLD+ TSGV Sbjct: 1 MLEILYQDEHLVAIHKPSGLLVHRSALDAHEERFAVQLLRDQLGRHVHPVHRLDKGTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L+ L + LA QFE ++K+Y AIVRG E +D+PL D + + Sbjct: 61 LVFALDRDTAGRLATQFETRAVRKQYVAIVRGHPAEAGTIDHPLSRRFDPVEHVAEDKVF 120 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQPA+T +R LAT E+P A RYPT+RY L+ LEP+TGR+HQ+RRHL H+ HPIIGDS Sbjct: 121 APQPAITRFRRLATAELPWAVDRYPTSRYALLALEPETGRRHQIRRHLKHISHPIIGDST 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 G + NR HFG +R++L + + L HP PL +HA + GW L Sbjct: 181 FGKGKHNRMFQAHFGSERMLLACTDIELRHPQRDAPLQLHAAPAPDFRAVADALGWHDAL 240 Query: 241 PENERVEFSAPSGQDG 256 R+ +G + Sbjct: 241 ---ARLPADGDTGHNA 253 >UniRef50_UPI0001AEC02F pseudouridylate synthase, 23S RNA-specific n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC02F Length = 279 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 117/233 (50%), Positives = 153/233 (65%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L +LYQDE ++A+ KP G LVHRS +DR E V +QT+RDQIGQHV+ AHRLDRPTSGVL Sbjct: 42 LPVLYQDEHIIAIEKPPGLLVHRSPIDRHETVFAVQTLRDQIGQHVYPAHRLDRPTSGVL 101 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 + SSE L QQ Q+ K YHAIVRG++ +DY L DKIADK R + Sbjct: 102 VFSFSSEIAAKLGQQMMDKQVVKTYHAIVRGFVHHTGYIDYALKYRYDKIADKHKRPQQP 161 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 PQPA T Y+ +A E+P G+Y + RY LV+L P TGRKHQLRRH+ H+RHPIIGD+ H Sbjct: 162 PQPASTMYQSVAKFEVPEPVGKYQSARYSLVKLSPSTGRKHQLRRHMVHIRHPIIGDTTH 221 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD +QN+ +HF L L +Q+ +HP TG+ ++I++ + L + Sbjct: 222 GDGKQNKFAKQHFNFNNLALSCTQMGFSHPVTGKWVSINSQMHSEMRLWLEKL 274 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 17/237 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+IL++D+ L+ ++KP+G +VH + ++ HRLD+ T+ Sbjct: 109 LKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQVPRAGIVHRLDKDTT 168 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+L++ + EA LA+Q +Q +++ Y A+V G L ++ V+D P+ Sbjct: 169 GLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKDGVVDAPIGRHPIHRTRMAVV- 227 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + +PA THYR L L+ +TGR HQ+R HL + HP+ GD Sbjct: 228 -QNGKPARTHYRVLEKFTAS-----------TLLHCSLETGRTHQIRVHLLSIGHPLAGD 275 Query: 179 SKHGDLRQNRSGAEH-FGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +G + S A+ L R LHA QL LTHP +G+ L + L D L Sbjct: 276 PVYGRTSPDPSTADAVVRLPRQALHAWQLELTHPHSGQILLWESPLPDDMAALLQAI 332 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 22/241 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRD-----QIGQHVFTAHRLD 54 L ILY+DE L+ +NKP+G +VH + + +V +M V+D Q + HRLD Sbjct: 85 LNILYEDEELIVINKPAGLIVHPTPSIKTGTLVNALMHHVKDLDKTMQDPNRLGIVHRLD 144 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 + TSGVL++ ++ + LL+++F++ + K Y AIV G L E E ++ PL Sbjct: 145 KETSGVLVVAKNAFSHHLLSKEFKERKTMKYYLAIVEGTLKEKEGEINLPLGRHPILRHK 204 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + + A+T Y+ L LV + +TGR HQ+R H ++ + Sbjct: 205 RAVVY--NGKEAITEYKTLKEF----------GDLATLVWIRLRTGRTHQIRVHFKYIGN 252 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P+IGDS +G + ++ + R MLHA +L HP T E + A L D + L Sbjct: 253 PLIGDSLYGKNKIEKNL--QIPVGRQMLHALKLGFYHPKTKEWMEFLAPLPDDFKNLLIT 310 Query: 234 F 234 Sbjct: 311 L 311 >UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D n=8 Tax=Sphingomonadales RepID=RLUD_ZYMMO Length = 317 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 19/241 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 LEI+++DE L+ VNKP+G +VH + + D +V HR+D Sbjct: 82 LEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIGGVARPGIVHRID 141 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADK 114 + TSG+L++ + A LA QF H I +RY AIV G + +D PL Sbjct: 142 KDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPSLQGHVDAPLARSSVNRQKM 201 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 D + AVTHYR + P L+E +TGR HQ+R H++ + H Sbjct: 202 AIVSDGRGKRAVTHYRMIT-----------PLKNASLIECRLETGRTHQVRVHMSSIGHS 250 Query: 175 IIGDSKHGDLRQ-NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 ++GD +G ++ + + + QR LHA+ L HP +G+ + A + Sbjct: 251 LLGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDAEMPQDMQLLFKM 310 Query: 234 F 234 Sbjct: 311 L 311 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 22/242 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 L+ILY+D ++ +NK G +VH + +V ++ +D G HRLD+ Sbjct: 80 LDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYHCKDLSGINGEIRPGIVHRLDK 139 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSGV++ + A LA+Q + Y AIV G + EEA + + K Sbjct: 140 DTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCGNIREEAGVIKGDIGRHPTDRKKM 199 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A + +PAVTH+R L Y LVE +TGR HQ+R H+A + HP+ Sbjct: 200 AIVHEHGKPAVTHFRVLERF-----------GAYTLVECRLETGRTHQIRVHMASIGHPV 248 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD K+G + A F ++ LH+ QL+LTHP T E +T A L + + L Sbjct: 249 LGDPKYGPRK-----ACPFAIKGQALHSLQLTLTHPRTREVMTFTAPLPEDMEKILKALR 303 Query: 236 WR 237 + Sbjct: 304 AK 305 >UniRef50_Q31IZ8 Pseudouridine synthase n=2 Tax=Proteobacteria RepID=Q31IZ8_THICR Length = 252 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 114/237 (48%), Positives = 153/237 (64%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +ILYQD+ LVAV+KP+G LVHRS +DR E +Q RDQI Q V+ HRLD+ TSG+L Sbjct: 10 FKILYQDDSLVAVHKPAGLLVHRSPIDRHETQFAVQMTRDQINQKVYPLHRLDKATSGLL 69 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L L S RL+ QQFE+H IQK Y AI RGW E +D+ L +LDK+ D+ A+ +K Sbjct: 70 LFALDSNTARLMGQQFEEHTIQKHYLAICRGWTAEHGEIDHALKHKLDKLGDRHAQTNKP 129 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 PQ A+T++ LAT ++ G++ + RY LV+L PKTGRKHQLRRHL H+ HPIIGD K+ Sbjct: 130 PQEALTNFERLATTDVMHKIGKFDSQRYSLVKLMPKTGRKHQLRRHLNHISHPIIGDVKY 189 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 GD N G RL L A+ L+ HP T +T++A L+ ++ +A W+ Sbjct: 190 GDRHHNHFFNTWLGQHRLYLAATSLTFNHPQTNARMTLNAPLELSYQKATQHLNWQE 246 >UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepID=A7NB61_FRATF Length = 332 Score = 283 bits (724), Expect = 6e-75, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 109/238 (45%), Gaps = 16/238 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG-QHVFTAHRLDRPTS 58 L+I+++D+ ++ ++KP +VH + V ++ +DQ HRLD+ TS Sbjct: 88 LKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKDTS 147 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+++ SS A L QQ + ++ ++Y AIV G + ++ ++ P+ + Sbjct: 148 GLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQQGTINQPIGRDPTNRTKMAINY 207 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + A+T+Y + + + L+E + +TGR HQ+R H+ ++HP++GD Sbjct: 208 R--GKEAITYYTPIEVYD-----------GFTLIECQLETGRTHQIRVHMKSIKHPLVGD 254 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 + R LHA +LS HP T + + + L + + +Q Sbjct: 255 QTYNKSSTKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDMLNLKAQLEQ 312 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 36/252 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------------------ 43 LEILY+DE L+ ++KP G +VH + +V Q Sbjct: 95 LEILYEDEDLIVISKPPGLVVHPAPGHSSGTLVNGLLFHFQSQGDEQKKGEPEEEEEAER 154 Query: 44 GQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDY 102 HRLD+ TSGV+++G + L QF+ + K+Y A+V+G L ++ ++ Sbjct: 155 PLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVSKKYLALVKGILPKKRGEINA 214 Query: 103 PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKH 162 P+ R+D +P+VT YR L T Y L+E+ TGR H Sbjct: 215 PIGRSTHDRKKFTVRQD--GKPSVTRYRVLETYHE----------NYSLLEVTLLTGRTH 262 Query: 163 QLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAG 222 Q+R H +L P++GD+ +G G E+ R MLHA +LS HP + + A Sbjct: 263 QIRVHFRYLGFPLLGDAVYGSK-----GTENKNFPRQMLHAWKLSFQHPSSNSKMEFEAP 317 Query: 223 LDDTWMQALSQF 234 L ++ AL + Sbjct: 318 LPPDFVSALERL 329 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 25/254 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L+ILY+D+ ++ +NKP+G +VH + +V + HRLD Sbjct: 81 LDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGGVKRPGVVHRLD 140 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQH----QIQKRYHAIVRGWLMEEA-VLDYPLVEELD 109 + TSGV+++ + A + L+ QF H + +RYHA++ G +D L Sbjct: 141 KNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALDRRYHALIWGTPHRNVWTIDASLGRSPH 200 Query: 110 KIADKFAREDKGP--QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 + + P + AVTH+ L + + L+E +TGR HQ+R H Sbjct: 201 NRTKQAVVHKQTPHARHAVTHFSLLEKYGTHADSTSFA----SLLECRLETGRTHQIRVH 256 Query: 168 LAHLRHPIIGDSKHGDLRQNRSGAEHFGLQ-------RLMLHASQLSLTHPFTGEPLTIH 220 +AH+ HP+IGD+ +G+ + +S + L+ R LHA+ L+ HP +G+ ++ Sbjct: 257 MAHIGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQFNRHALHAASLTFEHPSSGKVISFS 316 Query: 221 AGLDDTWMQALSQF 234 A L Q + Sbjct: 317 APLPQDMAQLIKHL 330 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 281 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 21/240 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 L+I+Y+D ++ +NK G + H +V V+ +D G HRLD+ Sbjct: 79 LDIIYEDRDILVINKQPGIITHPIPSHTSGTIVNGVLYHCKDLQGIGGVLRPGIVHRLDK 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSGV+++ + A + L +QF+ +K Y +V+G +E ++ + Sbjct: 139 DTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKGVPKRKEGDIEINIARNPVLRVKM 198 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + +PA+THY+ + LV PKTGR HQ+R H+ ++ HP Sbjct: 199 TVTNSEYGKPALTHYKVVREF----------GDIAALVFAYPKTGRTHQIRVHMKYIGHP 248 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD +G +++ E FG++R MLHA LS HP TGE + A + + +A+ + Sbjct: 249 LMGDEVYGRAKED----EIFGIKRQMLHALSLSFYHPRTGEKVKFIAKIPQDFKEAIQKL 304 >UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D n=39 Tax=Proteobacteria RepID=RLUD_NEIMA Length = 374 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 19/248 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+I+Y+D+ ++ VNKP+G +VH + + ++ HRLD+ TS Sbjct: 105 LDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQIPRAGIVHRLDKETS 164 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + A L Q ++ +++ Y A+ G + + ++ + + K A Sbjct: 165 GLMVVAKTLPAQNSLVWQLQERTVKRIYRAVANGIVPFDGKIETQIGRDPHN-RLKMAVV 223 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 G +PAVTH + L + +E +TGR HQ+R H+ HP+ GD Sbjct: 224 KFGGKPAVTHVKVLERYLA-----------HSYIECSLETGRTHQIRVHMREANHPLAGD 272 Query: 179 SKHGDLRQNRSGAEHFGLQ----RLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +G+ R ++ R LHA +LS THP +GE ++ A + D LS Sbjct: 273 PVYGNPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPESGETVSFEAPIPDDIYHLLSVL 332 Query: 235 GWRGLLPE 242 L Sbjct: 333 RLEAGLDS 340 >UniRef50_A4BJ00 Pseudouridine synthase n=1 Tax=Reinekea blandensis MED297 RepID=A4BJ00_9GAMM Length = 249 Score = 279 bits (716), Expect = 4e-74, Method: Composition-based stats. Identities = 107/240 (44%), Positives = 145/240 (60%), Gaps = 5/240 (2%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-----GQHVFTAHRLDRP 56 L I+Y+D+ L+ V+KPSG L+H SWLDR E + + + G V T HRLDRP Sbjct: 4 LNIVYEDDVLLVVDKPSGLLMHPSWLDRRETDTLAGRAKAYLAQQSEGAKVHTVHRLDRP 63 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 TSG+++M A + L +QF++ + KRY AI RG+ LDYPL+EE D+IADKFA Sbjct: 64 TSGLVVMCKDDHAAKALVEQFQEKTVNKRYWAICRGFAPVAETLDYPLIEEHDRIADKFA 123 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 DK Q A+T +R L E+ + RYP R +E P TGRKHQ+RRHL HLR+PI+ Sbjct: 124 DSDKPAQEAITEFRRLGITELAIPVSRYPKMRLSWMECVPVTGRKHQIRRHLKHLRYPIL 183 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD++HG NR+ FG + L A ++S HP T E +T + G D+ W L + GW Sbjct: 184 GDTRHGCRHLNRAVEGSFGELFMGLRAVEMSFQHPVTNELMTFNVGADNVWSCWLDRLGW 243 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 279 bits (716), Expect = 4e-74, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 25/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 LEILY+DE ++ VNK G +VH + + +V ++ R+ G HR+D+ Sbjct: 107 LEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLYHCRNLSGINGVLRPGIVHRIDK 166 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADK 114 TSG+L++ + A + LA+Q + H + +RY AIV G + E ++ P+ + K Sbjct: 167 DTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGTVEAPIGRDPAD-RKK 225 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A + + AVTHY L + L+E +TGR HQ+R H+A+L+HP Sbjct: 226 MAVVFQNAKEAVTHYEVLERFR-----------DFTLLEARLETGRTHQIRVHMAYLKHP 274 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD +G + FGLQ MLHA L HP +GE + A + + L + Sbjct: 275 VLGDPLYGPRK------NPFGLQGQMLHAQLLGFQHPRSGEYMEFSAPASGMFQKVLEEI 328 >UniRef50_A1U2H1 Pseudouridine synthase n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U2H1_MARAV Length = 245 Score = 279 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 153/232 (65%), Gaps = 3/232 (1%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD-QIGQHVFTAHRLDRPTSGVLLM 63 +Y+D+WL+AV+KP+G LVHRS +D+ E +Q R G+HV+ HRLDRPTSGVLL Sbjct: 8 IYRDDWLLAVHKPAGLLVHRSPIDKHETEFALQYARAMNGGEHVYPVHRLDRPTSGVLLF 67 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 E R L + K Y A+VRGW E+ V+D+PL EE + K +++ + Sbjct: 68 ARDPETARALGLAMMAGAVSKTYLAMVRGWAPEQGVIDHPLREEPEDRRLKG--QEQPVR 125 Query: 124 PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD 183 A+T YR LAT E+PVA RYPT+RY LVEL+P+TGRKHQLRRH+ H+ HPIIGD+ HG Sbjct: 126 EALTRYRRLATTELPVAIERYPTSRYSLVELKPETGRKHQLRRHMKHINHPIIGDANHGR 185 Query: 184 LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 R NR AE FG RLML A++L L HP T EPL + A + +++Q L+ F Sbjct: 186 GRHNRYFAERFGQGRLMLAATELRLRHPVTDEPLCLKAHPESSFLQVLAIFE 237 >UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JRD0_AGRVS Length = 342 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 117/253 (46%), Gaps = 24/253 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG-----QHVFTAHRLD 54 L +LY+D+ L+ ++KP+G +VH + +V ++ D + + HRLD Sbjct: 90 LTVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGGVKRPGIVHRLD 149 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQ----IQKRYHAIVRGWLME-EAVLDYPLVEELD 109 + TSGV+++ + A R LA QF H +++ Y A+V G +D L D Sbjct: 150 KETSGVMVVAKNDIAHRHLADQFADHGRSGPLERAYQALVWGRPRGLRGTIDAALGRAGD 209 Query: 110 KIADKFARED-KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHL 168 + RED + A+THY+ + T LVE +TGR HQ+R H+ Sbjct: 210 RTKRTVKREDTDDAREAITHYQVMERYGEKPD----ATCLASLVECRLETGRTHQIRVHM 265 Query: 169 AHLRHPIIGDSKHG-------DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 AH+ HP+IGD ++G +L + + A R LHA L+ HP TG+ + A Sbjct: 266 AHIGHPLIGDPEYGAAFKTKANLLPDAAKAIVTNFHRQALHAYLLAFEHPTTGDVMHFAA 325 Query: 222 GLDDTWMQALSQF 234 + D + Sbjct: 326 PIPDDMETIIRAL 338 >UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D n=94 Tax=Proteobacteria RepID=RLUD_RALSO Length = 358 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 15/242 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+++Y+D+ L+ +NKP+G +VH + + V+ R HRLD+ TS Sbjct: 116 LDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAAGLPRAGIVHRLDKETS 175 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + A L +Q + +++ Y A+V G E +D P+ + E Sbjct: 176 GLMVVARTLPAQTDLVRQLQARTVKRTYLALVWGETPEAGTIDAPIGRDPRDRTRMAIIE 235 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 +PA TH++ L V++ A + LV+ + +TGR HQ+R H HP++GD Sbjct: 236 TASGKPARTHFKTLDVVDLGRA-------QVSLVQCQLETGRTHQIRVHFESEGHPLLGD 288 Query: 179 SKHG-----DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 + Q R LHA +L L HP +G+ + HAG+ D + + Sbjct: 289 PVYTRNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASGQSVHWHAGVPDDLAELMDA 348 Query: 234 FG 235 Sbjct: 349 LE 350 >UniRef50_A6VXE8 Pseudouridine synthase n=2 Tax=Marinomonas RepID=A6VXE8_MARMS Length = 242 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 102/236 (43%), Positives = 145/236 (61%), Gaps = 1/236 (0%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L+IL+QDE LVAVNKP+G LVHR+ L +DE+ V+Q +RDQ G+ VF HRLDR TSGVL Sbjct: 3 LDILFQDEHLVAVNKPAGLLVHRTNLAKDEEDAVVQRLRDQTGKWVFPVHRLDRGTSGVL 62 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 +M S E R L+ QF + + QK YH +VRG+ E V++YPL + ++ + + Sbjct: 63 VMAFSPEVARRLSTQFAESKTQKTYHCLVRGYCNESGVINYPLAKLNEQKGRSRFKIEGT 122 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + A T + L ++PV RY + R +E+ PK GRKHQ+RRH H +P++GDS + Sbjct: 123 EREAETGFTRLIQYQLPVPVSRYDSMRLSWLEVTPKQGRKHQIRRHFKHHLNPLVGDSCY 182 Query: 182 GDLRQNRSGAEHFGLQ-RLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 G N+ E + RLMLHAS L HP T +P+T+ A L D + L++ + Sbjct: 183 GCRHINKVAKELWSEDFRLMLHASSLEFNHPITNQPITLKADLSDKIINILNKLEY 238 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 21/237 (8%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDRPTS 58 LY+DE ++ + KP G +VH + R +V ++ R+ G HRLD+ TS Sbjct: 96 LYEDEDILVLVKPPGLVVHPADGHRQGTLVHGLLHHCRNLSGISGQLRPGIVHRLDKDTS 155 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G L++ + A L QQF+ +++K Y A++RG L E+ + P+ K A Sbjct: 156 GCLVVAKNDLAHHNLVQQFKGREVEKTYQALLRGILAEDTGQVVLPIGRHPVH-RKKMAV 214 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 +G + AVTH+R + Y LVEL +TGR HQ+R H+A L HP+ G Sbjct: 215 RREGGREAVTHWRVRQRF----------SAGYTLVELLLETGRTHQIRVHMAALGHPLAG 264 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D +G +N +G+ R LHA +L+ HP +G LT A L +L + Sbjct: 265 DRLYG---RNPEKDMPYGIDRQWLHAWRLAFNHPRSGRRLTFTAPLWVDLQASLDRL 318 >UniRef50_Q1N5G6 Pseudouridine synthase n=1 Tax=Bermanella marisrubri RepID=Q1N5G6_9GAMM Length = 236 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 109/234 (46%), Positives = 147/234 (62%), Gaps = 7/234 (2%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILYQD+ L+A+NKPSG LVH+SW+ +D K +Q VRD G+HVF HRLDRPTSGVLL Sbjct: 9 ILYQDDDLIAINKPSGLLVHKSWVAKDAKEFALQIVRDMSGKHVFPVHRLDRPTSGVLLF 68 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 G S E + + Q+E Q K Y A+VRGWL E+ ++D+ L D + ++ + Q Sbjct: 69 GFSGEIAQQVQAQWE--QANKTYWAVVRGWLKEQTLVDHALKGMAD-----YGQDVEIVQ 121 Query: 124 PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD 183 A TH++ + VE+ RYP +R+ VE +PK GR HQ+RRHL HL HPIIGD+++G Sbjct: 122 EAQTHFKPIDYVEIDAEIDRYPKSRFSWVEAKPKQGRTHQIRRHLKHLSHPIIGDARYGK 181 Query: 184 LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 + NR EH+ RL+LH QL +THP +G L I A L+ S F W+ Sbjct: 182 GKYNRYITEHYDCPRLLLHHQQLEMTHPVSGSKLMITAPLEGAMQSLFSTFDWK 235 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 114/245 (46%), Gaps = 23/245 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG----QHVFTAHRLDR 55 L ILY+D +VAVNKP G +VH + +V ++ +D G Q HRLD+ Sbjct: 83 LAILYEDRDIVAVNKPPGMVVHPAPGHSSNTLVNALLAHCKDLSGIGGVQRPGIVHRLDK 142 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSGV+L + A L++Q Q +++K Y A+ G + E+ V+D PL Sbjct: 143 ETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLALAHGVIKEDTGVIDLPLARHPSDRKRM 202 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A++ + V+++ KTGR HQ+R HLA L HP Sbjct: 203 HVSTPAKGREALSLWTVKERF-----------LDATYVKVQIKTGRTHQIRVHLAALHHP 251 Query: 175 IIGDSKHGDLRQNRSGA-----EHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 +IGD+ +G ++ + +R MLHA +S THP TGE LT+ A L Q Sbjct: 252 VIGDTVYGGRKKRGRLPASVLGKAPPPERQMLHAHIVSFTHPVTGEKLTLTAPLPQDMAQ 311 Query: 230 ALSQF 234 L Sbjct: 312 LLEAL 316 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 20/241 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ------IGQHVFTAHRLDR 55 L+I+Y+DE+L+ VNKP +VH + + +V Q + HRLD+ Sbjct: 91 LDIVYEDEYLLVVNKPRNMVVHPGAGNYRDTMVNALLYHCQNLSDGTSYERPGIVHRLDK 150 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 TSG+L++ +E +L+++ + ++ + Y A+V G ++A +D P+ + Sbjct: 151 DTSGLLVVAKQNETHDILSEEIKNRRVARTYLALVIGDFSKKKATIDLPIGRDPRNRKKM 210 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 G + A+T L + + P + ++ +TGR HQ+R HL+HL +P Sbjct: 211 AVVH--GGKRAITKVEMLRSFQNPE--------KISYLKCSLETGRTHQIRVHLSHLGYP 260 Query: 175 IIGDSKH-GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 ++GD + G +N ++ L LH+ L+ THP + + A L M +S+ Sbjct: 261 LLGDPVYRGKTGKNVDIDKN--LTGQALHSFSLAFTHPVFKKTMVFRAPLPSDMMNLISK 318 Query: 234 F 234 Sbjct: 319 L 319 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 276 bits (707), Expect = 5e-73, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 118/243 (48%), Gaps = 25/243 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQ-TVRDQIG-----QHVFTAHRLDR 55 L+I+Y+D+ ++ +NK +G +VH + + + +V D + HRLD+ Sbjct: 82 LDIIYEDKDILVLNKNAGLVVHPAPGNHENTLVNALIAYCDNLSTISGVNRPGIVHRLDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSGV+++ + + R L +QF+Q + +K Y +++G L +E +D P+ + K Sbjct: 142 DTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLKGELPYKEGKIDAPIGRDPHD-RKK 200 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A K + AVT+++ L + VE+E KTGR HQ+R H +++ P Sbjct: 201 MAVTRKNSKKAVTYFKVLEFFR-----------DHSYVEVELKTGRTHQIRVHFSYMGFP 249 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GDS +G R R +LHA +L HP + + A L D + +AL Sbjct: 250 VVGDSIYGKKR------NRLQATRQLLHAYRLGFYHPRNDKWVEYKASLPDDFKKALDIL 303 Query: 235 GWR 237 + Sbjct: 304 ENK 306 >UniRef50_B4RVP9 Pseudouridine synthase n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RVP9_ALTMD Length = 265 Score = 276 bits (707), Expect = 5e-73, Method: Composition-based stats. Identities = 115/233 (49%), Positives = 150/233 (64%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L +LYQDE ++A++KP G LVHRS +D+ E V +QT+RDQIGQHVF AHRLDRPTSGVL Sbjct: 28 LPVLYQDEHIIAIDKPPGLLVHRSPIDKHETVFAVQTLRDQIGQHVFPAHRLDRPTSGVL 87 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 + S++ L +Q Q+ K+YHAIVRG++ +DY L DKIADK R + Sbjct: 88 VFSFSADTAAKLGKQMMDKQVVKQYHAIVRGFVHHTGYIDYALKYRYDKIADKHKRPQQP 147 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 PQPA T Y LA ++P GRY + RY LV L P TGRKHQLRRH+ H+RHPIIGD+ H Sbjct: 148 PQPASTMYESLAKFDVPEPVGRYQSARYSLVRLSPSTGRKHQLRRHMVHIRHPIIGDTTH 207 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD +QN+ HF L L +Q+ +HP T + +TI+ + Q + Sbjct: 208 GDGKQNKFAKSHFNFTHLALSCTQMGFSHPVTQKWITINGEMHSEMRQFTDRL 260 >UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L0S2_9DELT Length = 558 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 119/269 (44%), Gaps = 28/269 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQT-----VRDQIGQHVFTAHRLDRP 56 L +LY D+ L ++KP G VH + + +V +R+ G+ HRLD+ Sbjct: 91 LRVLYADKELAVLDKPPGLTVHPAPGLPEGTLVNRLLHHFPGLREMAGERPGIVHRLDKD 150 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIADKF 115 TSG+L++ L+ LA F Q+ K Y A+V G + + P+ + K K Sbjct: 151 TSGLLMVALTEPVRLALAADFAARQVHKTYLALVHGRPDGKGGDIRLPIGRDP-KYRTKM 209 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A KG +PA + +R + T P L+E+ TGR HQ+R H+A + HPI Sbjct: 210 AVPHKGGRPAHSRWRPVWTA---------PDGTASLLEVTIFTGRTHQIRVHMAAIGHPI 260 Query: 176 IGDSKHGDLRQ----NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 IGD+ +G + R GA R MLHA +LS THP EP + + Sbjct: 261 IGDAVYGPHQHAAWKRRGGAIARLASRQMLHAWKLSFTHPVLKEPRSFTCPPPPDF---- 316 Query: 232 SQFGWRGLLPENERVEFSAPSGQDGEISS 260 WR LL R + G G S Sbjct: 317 ----WRLLLLLGRRCQRIGVVGMPGCGKS 341 >UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ60_LAWIP Length = 541 Score = 275 bits (705), Expect = 9e-73, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 20/242 (8%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQT-----VRDQIGQHVFTAHRLDR 55 LEIL+ DE L +NKP G VH + ++ +V + +Q G HR+D+ Sbjct: 82 FLEILFSDEHLAIINKPPGLTVHPAPSCQESTLVHRLLKYFPKLIEQGGLRPGIVHRIDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG+L + L+ + L++ F +I K Y A+V G E + PL + Sbjct: 142 DTSGLLCIALTEDTRLKLSKIFLDRKINKEYLALVHGVPSMEGYIAVPLGRDPKTKVK-- 199 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + +PA T +R L + V Y ++ L +TGR HQ+R H+ H+ HP+ Sbjct: 200 VAVNPKGKPAHTEWRVLHRGKNDV---------YSILALTIQTGRTHQIRVHMKHIGHPL 250 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD + N++ F R MLHA +LS HP TG+ + ++ +S Sbjct: 251 VGDKLYAGGHVNKT----FQCNRQMLHAWKLSFEHPITGKKMNFLCPPPKDFLDTVSLLE 306 Query: 236 WR 237 Sbjct: 307 QE 308 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 36/252 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------------------ 43 LEILY+D+ L+ ++KP G +VH + +V Q Sbjct: 95 LEILYEDDDLIVISKPPGLVVHPAPGHASGTLVNGLLFHFQSQGDEQKKGEPEEEEEAER 154 Query: 44 GQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDY 102 HRLD+ TSGV+++G S L QF+ + K+Y A+V+G L ++ ++ Sbjct: 155 PLRAGLVHRLDQDTSGVMVVGKSETVVLDLMNQFKDRSVSKKYLALVKGILPKKRGEINA 214 Query: 103 PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKH 162 P+ R+D +P++T YR L T Y L+E+ TGR H Sbjct: 215 PIGRSTHDRKKFAVRQD--GKPSLTRYRVLETYHE----------NYSLLEVTLLTGRTH 262 Query: 163 QLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAG 222 Q+R H HL P++GD+ +G G E+ R MLHA +L+ HP + + A Sbjct: 263 QIRVHFRHLGFPLLGDAVYGSK-----GMENRNFPRQMLHAWKLAFQHPRSAAKMEFEAP 317 Query: 223 LDDTWMQALSQF 234 L ++ A+ + Sbjct: 318 LPPDFVSAMKRL 329 >UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=A1URK8_BARBK Length = 336 Score = 274 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 25/254 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L IL++D+ ++ VNKP+G +VH + +V + HRLD Sbjct: 80 LHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNALIYHCGDSLSGIGGVRRPGIVHRLD 139 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQ----IQKRYHAIVRGWLMEE-AVLDYPLVEELD 109 + TSGV+++ + A + L+ QF H + +RYHA++ G V+ L Sbjct: 140 KNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLDRRYHALIWGSPNRNIGVITASLGRARY 199 Query: 110 KIADKFAREDKG--PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 + + AVTH+ + + + L+E +TGR HQ+R H Sbjct: 200 DRTKQAVIHSHNIYARHAVTHFSVIEKYQTCADKIPFA----SLLECRLETGRTHQIRVH 255 Query: 168 LAHLRHPIIGDSKHGDLRQNRSGAEHFGLQ-------RLMLHASQLSLTHPFTGEPLTIH 220 +AH+ HP++GD+ +G+ + +S ++ R LHA+ L+ HP G ++ Sbjct: 256 MAHIGHPLVGDTVYGNAFKTKSNRFDSTIKEAIDLFNRQALHAASLTFEHPAKGNIMSFS 315 Query: 221 AGLDDTWMQALSQF 234 A L + ++ F Sbjct: 316 APLPQDMAELINHF 329 >UniRef50_D2QPA6 Pseudouridine synthase n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QPA6_9SPHI Length = 244 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 111/233 (47%), Positives = 143/233 (61%), Gaps = 6/233 (2%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L ILYQD LVA+NKP G LVHRS + D +Q +RDQ+GQ V+ HRLDR T+GVL Sbjct: 11 LSILYQDTELVAINKPHGLLVHRSMIASDASEFAVQLLRDQLGQRVYPVHRLDRKTAGVL 70 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L LS ++ QQF + +QK Y AIVRG+ +E +DYPL ++ A Sbjct: 71 LFALSESMNAIMQQQFMEGAVQKTYLAIVRGYTPDELTIDYPLCKDDGNGAVGVL----- 125 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q AVTH + L E+PVA G++PT+RY LVEL P TGR HQLRRH+AH+ HPIIGD H Sbjct: 126 -QEAVTHLKTLRQTEIPVAFGKHPTSRYSLVELTPTTGRMHQLRRHMAHILHPIIGDRPH 184 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 G +QN+ EHF + ++LHA ++ THP T E TI A + + L Sbjct: 185 GCNKQNKLFKEHFEMNTMLLHAQRIEFTHPVTQETTTIAAPFQAEFRRMLGVL 237 >UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacteria RepID=A7HV45_PARL1 Length = 482 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 109/257 (42%), Gaps = 32/257 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ-------IGQHVFTAHRLD 54 LEI+Y+D L+ V KP+G +VH + + D +V + HRLD Sbjct: 226 LEIVYEDADLIVVMKPAGLVVHPAPGNPDMTLVNALVAHCGETLSGIGGEKRPGIVHRLD 285 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQH----QIQKRYHAIVRGWL-MEEAVLDYPLVEELD 109 + TSG++++ + A + L+ QF H ++ + Y A+ G + +D + Sbjct: 286 KETSGLMVVAKTDRAHQGLSAQFAAHGRDGKLTRAYTALTWGVPQTRKGTVDANIARSSH 345 Query: 110 KIADKFAREDKG----PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLR 165 + D+G + A+THY Y VE +TGR HQ+R Sbjct: 346 NRSKMATVRDRGEETGGRIAITHYTV---------KTDYADGLVAEVECRLETGRTHQIR 396 Query: 166 RHLAHLRHPIIGDSKHGDLRQNR-------SGAEHFGLQRLMLHASQLSLTHPFTGEPLT 218 H+ L HP++GD+ +G ++R + A L R LHA L HP GE ++ Sbjct: 397 VHMTALGHPLLGDATYGTGMKSRKSKLSPEAQAALERLNRQALHAHHLGFEHPVAGEKMS 456 Query: 219 IHAGLDDTWMQALSQFG 235 A L + + + Sbjct: 457 FDAPLPEDMQELVRALE 473 >UniRef50_A9BZ16 Pseudouridine synthase n=9 Tax=Burkholderiales RepID=A9BZ16_DELAS Length = 319 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 124/270 (45%), Positives = 157/270 (58%), Gaps = 18/270 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L IL++DE LVAV KP+GWLVHR+ LD E V+QT+RDQ+G HV+ AHRLD+ T GVL Sbjct: 51 LHILWRDEHLVAVYKPAGWLVHRTGLDAHETRFVLQTLRDQLGCHVYPAHRLDKGTCGVL 110 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 +M L ++A + L Q F +++K+Y A+VRGWL + +D+ L + A ED Sbjct: 111 VMALHAQAAQRLGQAFAGQEVRKQYLALVRGWLPDAVEVDHALRPDD-------APEDAP 163 Query: 122 PQPAVTHYRGLATVEMPVATG-RYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 QPA T R LA +E P A R+ TR LVE P TGR+HQ+RRHL H+ HPIIGD+ Sbjct: 164 AQPAQTSLRCLARLEWPEAFDPRHAATRISLVEALPATGRRHQIRRHLKHVAHPIIGDAT 223 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL--------DDTWMQALS 232 HG NR AE GLQRL LHA L L HP TGEPL A W + Sbjct: 224 HGKGPLNRWWAERLGLQRLWLHAHALELAHPMTGEPLRFEADWRQLGHVADVQHWRALCA 283 Query: 233 QFGWRGL--LPENERVEFSAPSGQDGEISS 260 GW+ LP R + +A +G G S Sbjct: 284 LPGWQACAGLPATARPDQTASAGAPGSGCS 313 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 112/240 (46%), Gaps = 25/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 LE+ ++D ++ VNKP G +VH + +V ++ RD G HRLDR Sbjct: 81 LEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVNALLHHCRDLSGINGILRPGIVHRLDR 140 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG+L++ + A LA Q + + +RY A+V G E +D P+ + + Sbjct: 141 DTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTALVHGRPRRETGTVDAPIGRHP-RDRQR 199 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A + + A THYR + + ++ L+EL TGR HQ+R H+AH+ HP Sbjct: 200 MAVTPRSGRAARTHYRVVRRFD-----------KFSLLELTLDTGRTHQIRVHMAHVGHP 248 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD K+G R GL+ LHA L HP TGE L A L L + Sbjct: 249 LVGDLKYGHARP------ELGLEGQFLHAGTLGFRHPRTGEVLVFEAPLPSELAAVLERL 302 >UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7V3_ACIC5 Length = 355 Score = 274 bits (701), Expect = 2e-72, Method: Composition-based stats. Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 31/258 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRD-----EKVVVMQTVRDQIGQ------HVFTA 50 L+I+Y+D+ L+ VNKP+G +VH D +V R + Sbjct: 104 LDIIYEDKDLIVVNKPAGMMVHAGSGATDSARNRGTLVNALLGRQEKLSKTGGDLRPGIV 163 Query: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELD 109 HRLD+ TSG++++ + A + LA+ F Q +I K Y A+V G + E+ ++ + ++ Sbjct: 164 HRLDKETSGLIIVARNDAAHQRLAEMFSQREIHKTYLALVHGHIAEDRGTINAAIARDVI 223 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 + R +G + A++HYR +E ++ LV + +TGR HQ+R HL+ Sbjct: 224 RRTRMTTRRTEGARTAISHYRVQRRIETRW-------GKFTLVSVRIETGRTHQIRVHLS 276 Query: 170 HLRHPIIGDSKHGDL------------RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPL 217 + HP++GD+ +G R+ E L R LHA++L HP + +PL Sbjct: 277 SIGHPVVGDTHYGAPTTIVLPVANRARRKQLPAPEGLSLPRNFLHAAELKFPHPRSEKPL 336 Query: 218 TIHAGLDDTWMQALSQFG 235 + A L + L Q Sbjct: 337 HLEAPLPAELVAFLEQLE 354 >UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXT6_JANMA Length = 342 Score = 273 bits (700), Expect = 3e-72, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 16/237 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG-QHVFTAHRLDRPTS 58 L I+++D ++ +NKP+G +VH + + ++ ++ + G HRLD+ TS Sbjct: 115 LAIVHEDAEMLVINKPAGLVVHPAAGNWSGTLLNGLLHYLPSISGVPRAGIVHRLDKDTS 174 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + A L +Q + +++ Y A+V G +D + E Sbjct: 175 GLMVVAKTLIAHTDLVRQLQARTVKREYLALVWGTPNITGKIDASIGRHARDRIKMAVSE 234 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + +PAVTH++ LAT G L+ +TGR HQ+R H+ + ++GD Sbjct: 235 NLTAKPAVTHFQRLAT-------GMLDGRPVSLMLCRLETGRTHQIRVHMQSIGFALVGD 287 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +G R LHA +L L HP +GE + + L + + +++ G Sbjct: 288 GLYGKQHLTTVF------PRQALHARRLGLIHPVSGEAVEWSSELPQDFAELIARAG 338 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 273 bits (698), Expect = 5e-72, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 24/239 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQT-----VRDQIGQHVFTAHRLDRP 56 + ++Y+D+ ++ +KP G + H + +V ++ Q HRLD+ Sbjct: 88 IPVIYEDDDIIVFDKPPGIVTHPAPGHEHGTLVNALKAIRPDLQVQPSHRPGIVHRLDKD 147 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKF 115 TSG+L++ + A L +Q++ + K+Y A+V G + + +D P+ + + Sbjct: 148 TSGLLVVAKTEAARLALLEQWQSRSVVKKYTALVHGVVEPDSGTIDAPISRDPVERTKMA 207 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 +PA+TH+R L L+++ +TGR HQ+R H A + HP+ Sbjct: 208 VVS--WGRPAITHFRVLERFRC-----------ATLLDVTIETGRTHQIRVHCAFIGHPV 254 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +GDS++G R + R LHA L HP TG+ + + L L Sbjct: 255 VGDSQYGGHRPF-----CVPVPRQFLHARYLRFVHPTTGQAIELETPLPYDLRTVLEAL 308 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 273 bits (698), Expect = 5e-72, Method: Composition-based stats. Identities = 70/276 (25%), Positives = 106/276 (38%), Gaps = 54/276 (19%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ---------------- 45 L+I+Y+D +L+ VNK +G +VH + +R +V G Sbjct: 86 LDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLYYIGSGPVRFDEEDDLPEDDEIG 145 Query: 46 ----------------HVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAI 89 HRLD+ T+G++++ LA+QFE I + Y AI Sbjct: 146 LSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAKDDVTHTGLARQFEHRTIARTYLAI 205 Query: 90 VRGWL-MEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTR 148 V G ++ + + D + AVTHY + + Sbjct: 206 VWGVPDPPRGRIEAAIGRDPRDRQRMAVVPDDRGKRAVTHYEVVEALPA----------- 254 Query: 149 YGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDL--------RQNRSGAEHF--GLQR 198 LV + +TGR HQ+R H H+ HP++GD +G + R+ + L R Sbjct: 255 AALVRFKLETGRTHQIRVHARHIGHPVLGDPTYGGRTIRYGPHTPRRRAFYDQLFARLTR 314 Query: 199 LMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 LHA L HP TGE L A L + AL Q Sbjct: 315 QALHAHTLGFRHPRTGEWLEFEAPLPEDMACALEQL 350 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 25/242 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 ++ILY+D + ++K +G +VH S +V VM ++D G HRLD+ Sbjct: 77 IKILYEDSDIAVIDKEAGIVVHPSHGHESGTLVNAVMYHIKDLSGINGEIRPGIVHRLDK 136 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG+L++ + A L++ F I+K Y AI++G + +E+ L+ K K Sbjct: 137 DTSGLLIIAKNDTAHLRLSEMFGSSGIRKTYIAILKGKINKESGKLETLIGRDPKDRKKM 196 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A + A+T+++ L E ++ LV++ +TGR HQ+R H+ +L +P+ Sbjct: 197 AVVKTNGKTAITYFQVLDKNE-----------KFSLVKVNIQTGRTHQIRVHMKYLGYPV 245 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GDS +G ++ R MLHA +L HP T + + I + L + +AL + G Sbjct: 246 LGDSVYG--------RDNKIAGRQMLHAYKLEFLHPVTQKAMKIISELPQDFEKALKETG 297 Query: 236 WR 237 Sbjct: 298 LE 299 >UniRef50_B5JL25 Pseudouridine synthase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JL25_9BACT Length = 249 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 121/231 (52%), Positives = 152/231 (65%), Gaps = 3/231 (1%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEILY+DE LVA++KPSG LVHRS +DR E +Q +RDQIGQHV+ AHR+DRPTSG+L Sbjct: 14 LEILYRDERLVAIHKPSGLLVHRSPIDRRETRFAIQLLRDQIGQHVYPAHRIDRPTSGIL 73 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L GL AG L+ F+ +IQK Y A+ RG L E ++D PL + D + E Sbjct: 74 LFGLDEAAGTALSLLFQNREIQKNYLAVTRGHLPESGLIDSPLHKYEDADGHIKSSET-- 131 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A T YR LAT E+P T RY TTRY LVEL P TGR+HQ+RRHLAH+RHPIIGD +H Sbjct: 132 -QEAETAYRRLATTELPYPTERYDTTRYSLVELTPHTGRRHQIRRHLAHIRHPIIGDVRH 190 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 G + N+ HF + RL+L A+ + HPFT PL IH + ++ AL Sbjct: 191 GCNKANKLARSHFAIHRLLLAATHVVFVHPFTNAPLKIHCPPETSFQTALQ 241 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 272 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 26/258 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG----QHVFTAHRLDR 55 L ILY+D L+ ++KP+G +VH + +V ++ RD G HRLD+ Sbjct: 85 LSILYEDHDLLVLDKPAGLVVHPAAGHVSGTLVNALLFHCRDLAGIGGVMRPGIVHRLDK 144 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG+L++ + A + LA QF++HQ+ K Y A+V G E+ +D P+ + K Sbjct: 145 DTSGLLVVAKTDAAHQGLALQFKKHQVGKTYQALVYGDPREKTGQIDLPVGRHPVE-RKK 203 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + + + A T +R + L+ ++ TGR HQ+R HLA + HP Sbjct: 204 MSTKSRRGKEAATRWRIAERFGV-----------ATLLNVDIVTGRTHQIRVHLAAIGHP 252 Query: 175 IIGDSKHGDLRQNRSGAEHF------GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 ++GD+ +G ++ + + + R LHA++LS THP T + L HA L Sbjct: 253 VVGDAVYGSSKRATTLTDPAVKGRLKEMSRQALHAARLSFTHPVTHKILEFHAPLPADME 312 Query: 229 QALSQFGWRGLLPENERV 246 + F + P+++ V Sbjct: 313 DLCA-FLRKHCCPDSQLV 329 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 272 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 25/244 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ--------IGQHVFTAHRL 53 L+I+Y+D+ ++ VNKP+G +VH + +V RD HRL Sbjct: 90 LDIIYEDDDILVVNKPAGMVVHPGAGNYTGTLVNALLGRDLDTFSAMDDGSSRPGIVHRL 149 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVE-ELDKI 111 D+ TSGV+++ S++ L++ F + ++K Y A+ RG + + + ++ Sbjct: 150 DKETSGVIIVAKSAKNLDKLSRSFARRDVEKYYVALCRGTIRVGRDTITSHIGRSRSNRQ 209 Query: 112 ADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 + + + A++HY+ LA LV+L+ TGR HQ+R H++ + Sbjct: 210 KMENTNDSNRGKEAISHYKVLA-----------DNNGATLVKLKIDTGRTHQIRVHMSGI 258 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 HP++GD +G R + E R +LHA + + HP T E +T A L D + Sbjct: 259 NHPVVGDKLYGVRRLD----EKESPDRHILHAWRTRIIHPGTQEIMTFTAPLHDDFKSVC 314 Query: 232 SQFG 235 +FG Sbjct: 315 DKFG 318 >UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria RepID=Q312A0_DESDG Length = 578 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 114/269 (42%), Gaps = 25/269 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQT-----VRDQIGQHVFTAHRLDRP 56 LE+LY+D ++ +NKP+G VH + + +V + Q G HR+D+ Sbjct: 119 LEVLYRDAHMLVINKPAGLTVHPAPSCPEGTLVHRLLHHFPELEAQEGFRPGIVHRIDKD 178 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKF 115 TSG+LL+ L+ +A L+ F +I K Y A+V+G + +D P+ Sbjct: 179 TSGLLLIALTEKARLALSDAFAGRRIHKEYLALVKGIPEGDSGEIDAPVGRHPTHKTRMA 238 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 +G + A++ +R L T + LV + TGR HQ+R H+ H HP+ Sbjct: 239 VV--RGGREALSTWRVL-----LADPHGGGGTGWTLVAVRIHTGRTHQIRVHMQHTGHPL 291 Query: 176 IGDSKHGDLRQNRSGAEHFGL----QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 GD+ +G + L R MLHA ++S HP TG P+ + + Sbjct: 292 WGDALYGGMPGREELQTTPALAQTATRQMLHAWKISFDHPVTGAPMQFTLPPPADFGTLI 351 Query: 232 SQFGWRGLLPENERVEFSAPSGQDGEISS 260 G R + +G G S Sbjct: 352 RDLG--------SRCQRVVITGMPGCGKS 372 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 30/259 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDE-----KVVVMQTVRDQIGQ------HVFTA 50 L+++Y+D+ L +NKP+G +VH +E +V R + Sbjct: 82 LDVVYEDDDLAVINKPAGMMVHVGAGATEEERNRGTLVNALLYRFRALSEVGGDMRPGIV 141 Query: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELD 109 HRLD+ TSG++++ + A R LA+QF ++ K+Y A+V GW + + ++ P+ ++ Sbjct: 142 HRLDKETSGLIVVAKNDVAHRKLAEQFSSRRVHKKYVALVHGWPKKLKGTINLPIARDMS 201 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 + + G + A++HY +E P ++ LVE++ +TGR HQ+R H+A Sbjct: 202 R-RTRMTTRGSGGRDALSHYEVKEKIESPY-------GKFALVEVKIETGRTHQIRVHMA 253 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFG-------LQRLMLHASQLSLTHPFTGEPLTIHAG 222 L HP++GD+ +G + R G L+R LHA+++ L P TG+ L Sbjct: 254 SLGHPVVGDTLYGAPGELRVTKALKGMPSKMASLERNFLHAAEIELQQPATGKALRFVTK 313 Query: 223 LD---DTWMQALSQFGWRG 238 + + + + L RG Sbjct: 314 VPAALEDFAETLRHPEVRG 332 >UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49WX8_STAS1 Length = 305 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 27/240 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 L+I Y+D+ + V KP G +VH S +V +M +++ G HR+D+ Sbjct: 81 LDIYYEDDDVAIVYKPKGMVVHPSAGHYTGTLVNGLMYQMKNLSGINGEIRPGIVHRIDK 140 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG+L++ + A R L Q + ++Y A+V G + + +D P+ + Sbjct: 141 DTSGLLMVAKNDVAHRSLVDQLVNKTVTRKYVALVHGKIPHDYGTVDAPIGRNKNDRQSM 200 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 +D + AVTH+ L +Y L+E + +TGR HQ+R H+ ++ +P Sbjct: 201 DVVDD--GKEAVTHFNVLEHF-----------NKYTLIECQLETGRTHQIRVHMKYIGYP 247 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD K+G + + LHA + HP T E + L + + Q LS+ Sbjct: 248 LVGDPKYGPKK-------TLDIGGQALHAGIIGFEHPVTHEYIEKSTALPEDFEQLLSEL 300 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 28/240 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ--------HVFTAHRL 53 L+I+++D+ L+ VNKPSG +VH S +V HR+ Sbjct: 80 LDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDSTSEEIYRPGLVHRI 139 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIA 112 D+ TSG+L++ +++ + LA+Q ++++ + Y AIV G E V+D PL Sbjct: 140 DKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGVVDAPLSRHQTNRL 199 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + +KG + A+TH+ L + + Y LV +TGR HQ+R H+ ++ Sbjct: 200 KRVV--EKGGKNAITHFEVLDSF-----------SDYSLVSCRLETGRTHQIRAHMEFIK 246 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 HPI+ D + +N A FG LHA LS THP TGE L + + + Sbjct: 247 HPIVNDPLYHPKGKN---ATEFG---QFLHARTLSFTHPLTGETLNFQVEPPKEFAEFIQ 300 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 18/242 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ------IGQHVFTAHRLDR 55 ++++Y+D++L+ ++KP+G +V+ D ++ + HRLD+ Sbjct: 82 IQVIYKDDYLIVLSKPAGMVVYPCAGHPDGTLMNALAYHVKKLANVGAPFRPGIVHRLDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSGV+++ L E L + F++ +I+K Y A+V G L + P+ + K Sbjct: 142 DTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYGQLRGSGKITTPVGRAI-YDRKKM 200 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + + K + A+T + + + Y ++++ TGR HQ+R H + + HP+ Sbjct: 201 SIKSKKAKEAITEWEVIKNFK-----------NYTFLKVKILTGRTHQIRVHFSSIGHPV 249 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 IGD +G G + + R MLHA ++ L HP T + L A L D L+ Sbjct: 250 IGDKTYGRKTYIEIGNKKIPVSRQMLHAHKIELIHPITEKLLQFEASLPDDIQYILNILE 309 Query: 236 WR 237 R Sbjct: 310 DR 311 >UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=A3M2Y1_ACIBT Length = 350 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 22/242 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+I+Y+DE ++ +NKP G +VH + +V HR+D+ TS Sbjct: 115 LDIVYEDEDILVINKPVGMVVHPGAGNTSSTLVNALLYHSPKSAELSRAGLVHRIDKDTS 174 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+L++ + EA L++Q + + Y + G ++ +D P+ Sbjct: 175 GLLVVAKNLEAQFSLSKQLGDKSVYRIYDLVTYGNIIAGGTIDEPIKRHPVDRVKMAILP 234 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 G + AVTHY + V+ + +TGR HQ+R H +++ H ++GD Sbjct: 235 --GGRDAVTHYNVKERFR-----------DFTRVQAQLETGRTHQIRVHFSYIGHGLVGD 281 Query: 179 SKHGDLRQNRSGAEHF------GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 + + + +GA G +R LHA++L L HP TGE + A + + Q ++ Sbjct: 282 QVYMNRVRIPAGASELLIETLRGFKRQALHAAKLGLKHPRTGEEMLFEAPWPEDFTQLVN 341 Query: 233 QF 234 Sbjct: 342 VL 343 >UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae RepID=A9BMW0_DELAS Length = 356 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 27/243 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ---HVFTAHRLDRPTS 58 L+++Y+DE L+ VNKP+G +VH + + ++ RD + HRLD+ TS Sbjct: 125 LDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTLLNGLLGRDPKAREVPRAGIVHRLDKDTS 184 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVR---GWLMEEAVLDYPLVEELDKIADKF 115 G++++ S A L + ++Y A+ G + +D P+ + Sbjct: 185 GLMVVARSRAAMDALVAMIAARDVSRQYLALAHKAWG-PRKHREVDAPIGRDPRNRLRMA 243 Query: 116 ARE--DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + + A T LA E LV TGR HQ+R H+A L H Sbjct: 244 VVDLAQHAGKTARTDIDLLAGNE-----------EVSLVRCTLHTGRTHQIRVHMASLGH 292 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++ D+ +G G E G+ R LHA +L+ THP TG+ L + A L QAL Sbjct: 293 PLVADAVYG-------GKEAGGMARQALHAFRLAFTHPMTGQALVLRAPLPPDMAQALEN 345 Query: 234 FGW 236 +G Sbjct: 346 WGL 348 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 270 bits (691), Expect = 3e-71, Method: Composition-based stats. Identities = 72/244 (29%), Positives = 116/244 (47%), Gaps = 24/244 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG----QHVFTAHRLDR 55 L+ILY+DE L+ +NKP+G +VH D VV ++ D G Q HRLD+ Sbjct: 98 LDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIGGVQRPGIVHRLDK 157 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEEL-DKIAD 113 T+G +++ + A L Q ++ ++ Y IV G E + ++ P+ D+ Sbjct: 158 DTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVNLPVGRHPGDRQKM 217 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 +KG + AVTH+R L + + +E + +TGR HQ+R H + H Sbjct: 218 GIVPVEKGGREAVTHWRLLERI-----------GNHSWLEFQLETGRTHQIRVHSKQMGH 266 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++GD+ + G+ + L LHA QLSL HP +GE +T A + + + L Sbjct: 267 PLVGDNLY-----TSPGSVNVNLPGQALHAHQLSLIHPVSGEIITAIAPMPAHFEKLLVY 321 Query: 234 FGWR 237 R Sbjct: 322 LRQR 325 >UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=C4FWV7_9FIRM Length = 309 Score = 270 bits (691), Expect = 3e-71, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 21/241 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ-----HVFTAHRLD 54 L+I+Y+DE ++ +NKP+G +VH S +V ++ + + HR+D Sbjct: 81 LDIIYEDEDILVINKPAGLVVHPSKGHLKGTLVNGLLHYLNGNLSTGSDFYRPGIVHRID 140 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 + TSG+L++ + A + LA Q H +++ Y A+V G + + ++ PL + Sbjct: 141 KDTSGLLVVAKHNAAHQALADQLLNHDMRRSYIALVHGQVKAPQGTIEAPLQRDPANRLR 200 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K + A+T ++ + E L++LE +TGR HQ+R HL + H Sbjct: 201 WTV--AKEGKYALTRFQVMENFE-----------NATLLDLELETGRTHQIRVHLEFIGH 247 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++GD + + G+ + +LHA L L HP +GE L A L + +AL Q Sbjct: 248 PLVGDPVYRKGLDHIKGSLVHDMTGQLLHAYALKLQHPRSGEWLEFKAPLPRRFEEALDQ 307 Query: 234 F 234 Sbjct: 308 L 308 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 32/256 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-VMQTVRDQIGQ-----HVFTAHRLDR 55 ++I+Y+D+W+ +NKPS +VH + + +Q DQ+ HRLDR Sbjct: 93 IDIVYEDDWIAIINKPSDMIVHPGKGNYAGTLAGALQYHFDQLSDVAGQYRPGIVHRLDR 152 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG++++ ++ L+ QFE+ +QK Y AIV G + + +D + Sbjct: 153 NTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYRAIVWGRMEFDTDYIDTFMCVHPRAREKM 212 Query: 115 FAREDKG-PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 ++ G + A T+Y + + + V L+P+TGR HQLR H+ H+ H Sbjct: 213 IVCDEGGNARNAFTYYEVIERYQA-----------FTYVRLKPRTGRTHQLRVHMQHIGH 261 Query: 174 PIIGDSKHGDLRQNR-------------SGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH 220 I+ D +G + + ++R LHA L HP +G+P+ Sbjct: 262 SIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHAYCLEFFHPQSGKPMKFE 321 Query: 221 AGLDDTWMQALSQFGW 236 A L + L+ Sbjct: 322 APLPEDMQNTLAALDQ 337 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 269 bits (690), Expect = 4e-71, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 24/241 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG-QHVFTAHRLDRPTS 58 L+I+Y+D+ ++ +NKP G +VH + +V ++ +Q HR+D+ TS Sbjct: 181 LDIIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLYHYPNQAHLPRAGLVHRIDKNTS 240 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW---LMEEAVLDYPLVEELDKIADKF 115 G+L++G + A L +Q + + + Y +V G L + +D P+ + Sbjct: 241 GLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPSLARQRTIDAPIGRHRTQRTKMT 300 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + A+TH + + + Y L+++ +TGR HQ+R HL+H+ HPI Sbjct: 301 VTS--TGKTAITHIMKITPL----------SDTYSLLDVRLETGRTHQIRVHLSHIGHPI 348 Query: 176 IGDSKHGDLRQNRSGAEHF------GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 IGD +G+ +Q R+G R LHA +L HP TGE + + A L ++ Sbjct: 349 IGDDIYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIELTAPLPQDIVE 408 Query: 230 A 230 Sbjct: 409 L 409 >UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB31_9CHLA Length = 319 Score = 269 bits (690), Expect = 5e-71, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 101/240 (42%), Gaps = 26/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG--------QHVFTAHRL 53 L ILY+DE L+ +NKP G +VH + + V HRL Sbjct: 87 LNILYEDEHLLIINKPVGMVVHPAPGNWTGTFVNALLYHCGYSLSDASVDSIRPGIVHRL 146 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIAD 113 D+ TSGVL+ + + L + F Q+ K Y AI G L++P+ Sbjct: 147 DKETSGVLVAAKTLSVQQKLMELFAARQVYKEYWAICLGNP-GNCELNWPIGRHPIHRKQ 205 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 RED + A+T L L +L TGR HQ+R HL H H Sbjct: 206 MTVRED--GKEALTFCETLEV-----------GNEICLAKLILSTGRTHQIRVHLKHKGH 252 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GDS +G + N + +R MLHA +L+ HP T + + + A L + L + Sbjct: 253 PILGDSIYGSKQVN----MRYRAERQMLHARKLAFIHPITQQKIEVEAPLPADMEECLRK 308 >UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q3A0C2_PELCD Length = 326 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 23/246 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 L ILY+D L+ ++KP G +VH + +V ++ +D G HRLD+ Sbjct: 81 LVILYEDRHLIVIDKPPGMVVHPAPGHYQGTLVNALLHHCQDLSGIGGELRPGIVHRLDK 140 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSGV++ + A + LA QF+ H I +RY A++ G L + +D P+ K Sbjct: 141 DTSGVMVATKTDSAHQSLAAQFKAHSITRRYIALIHGVLTGDRGSIDRPIGRHPTH-RKK 199 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + + AVTH+R L R+ R LVEL +TGR HQ+R H + +HP Sbjct: 200 MSTTCRTGRHAVTHWRVLR---------RFDDDRLTLVELALETGRTHQIRVHFSEQQHP 250 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQ------RLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 ++GD +G + ++ + L+ R LHA L HP TG+ L + L + Sbjct: 251 LLGDPVYGGSGRLKTINDPQLLKRAKALGRQALHARLLGFQHPETGKYLEFSSPLPEDLR 310 Query: 229 QALSQF 234 + Sbjct: 311 SVIDYL 316 >UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae RepID=C8PVB8_9GAMM Length = 380 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 27/248 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR---DQIGQHVFTAHRLDRPTS 58 L+ILY+DE ++ +NKP G +VH + +V + HR+D+ TS Sbjct: 143 LDILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNALLFHYPDSRTLPRAGLVHRIDKETS 202 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIV---RGWLMEEAVLDYPLVEELDKIADKF 115 G++++ S++ L Q + + + Y AIV L +D P+ + Sbjct: 203 GLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLASAAELARHRTIDAPIGRHPTQRTKMA 262 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 +PAVTH + + V LV + +TGR HQ+R HL++L P+ Sbjct: 263 VVSS--GKPAVTHLEKITAISDAV----------SLVSVRLETGRTHQIRVHLSNLGFPL 310 Query: 176 IGDSKHGDLRQNRSGAEHFG---------LQRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 +GD +G R+N + QR LHA +L HP TGEP+ + A L + Sbjct: 311 LGDPLYGAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIHPKTGEPIKVQARLPED 370 Query: 227 WMQALSQF 234 Q L Sbjct: 371 MQQLLDTL 378 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 28/241 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV-MQTVRDQIGQ-----HVFTAHRLDR 55 LEI++QD+ L+ +NKP G VH + D ++ + + ++ HRLD+ Sbjct: 80 LEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVLALEPKMEDFDDPLRPGIVHRLDK 139 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 TSG+LL+ + E L+ QF++ ++K Y +V+G L E ++ PL + Sbjct: 140 DTSGLLLVAKNRETLANLSAQFKERTVRKYYLTLVKGELHPAEGFIEAPLGRDPQNRQKI 199 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A T Y+ L + Y L+E++ +TGR HQ+R H A + HP Sbjct: 200 AVVS--NGRHARTGYKVLRYI-----------QGYSLLEVKLETGRTHQIRVHFAAIGHP 246 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + GD+ +G + L+R LHA +LS T P G+ + + L + L Sbjct: 247 VAGDAIYG--------QKETWLKRQFLHAHRLSFTLPSNGQTVEFTSPLPPDLEETLKIL 298 Query: 235 G 235 Sbjct: 299 E 299 >UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q2W2D5_MAGSA Length = 505 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 25/249 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L ++Y+DE L+ ++KP+G +VH + + DE +V + HR+D Sbjct: 265 LTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCGESLAGIGGVKRPGIVHRID 324 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 + TSG+L+ + A R LA QF H +++ Y A+V G + ++ + + Sbjct: 325 KDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGEIEGNIGRNPND-RK 383 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K A G +PA+T YR L + + LVE TGR HQ+R H+ H Sbjct: 384 KMAVVKSGGKPALTRYRVLKS---------FAGGAVSLVECRLATGRTHQIRVHMTTQGH 434 Query: 174 PIIGDSKHGDLRQNRS-------GAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 P++GD +G +R ++ R LHA L +HP G + +G+ Sbjct: 435 PLVGDPVYGRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGFSHPTKGYDVRFESGMPLD 494 Query: 227 WMQALSQFG 235 + Sbjct: 495 INALMQILE 503 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 25/239 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 ++Y+DE++ ++KP +VH + +V ++ ++Q+ HRLD+ Sbjct: 75 FNVIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNGLLYKFKNQLSDLDPLRPGIVHRLDK 134 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG++++ +++A L QF+ QI+K Y AIV G E ++ P+ + K Sbjct: 135 NTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIVHGKTPESGIIAEPIGRNPND-RKKM 193 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A K + A+T Y+ L Y L+ + TGR HQ+R H+A++ +P+ Sbjct: 194 AVVYKNSKQAITKYKKLKEF-----------QEYSLLNINLLTGRTHQIRVHMAYIGYPV 242 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +GD +G + + MLH+ +L HP T + + + + + + Sbjct: 243 LGDIIYGRK-------NSLKIDKQMLHSYKLIFNHPITNQKMEFTDEFPIRFKKFIDKI 294 >UniRef50_C6VVP1 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C6VVP1_DYAFD Length = 228 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 106/236 (44%), Positives = 143/236 (60%), Gaps = 11/236 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEILY+ + LVA+NKP+G LVHRS + D V +Q +RDQ+ Q V+ AHRLDR TSGVL Sbjct: 4 LEILYRSDDLVAINKPNGLLVHRSPIASDADVFAVQLLRDQLSQKVYPAHRLDRKTSGVL 63 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L L+ + +F + +I K YHAIVRG + +DYPL + D Sbjct: 64 LFALNENVNSEMQGKFMEGEITKTYHAIVRGHTADRGEIDYPLKRD-----------DGV 112 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q AVTH+ LA E+P A G++ T+RY LV+L P TGR HQLR+H+AH+ HPIIGD H Sbjct: 113 TQDAVTHFETLARAEVPFALGKHATSRYSLVQLNPLTGRMHQLRKHMAHIMHPIIGDRPH 172 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 G +QNR E G+ ++MLHA + HP +G+ +TI A +++ S G Sbjct: 173 GCNKQNRFFKEELGMIQMMLHAVSVEFVHPVSGQHVTIVAPYLSEFVRMRSVLGLE 228 >UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0R4_DICTD Length = 303 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 120/240 (50%), Gaps = 26/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 +EI+Y+DE +V +NKP G +VH + ++ +V ++ V+D G HRLD+ Sbjct: 79 IEIVYEDEDMVIINKPKGMVVHPAHGHYNDTLVNALLYRVKDLSGIGGELRPGIIHRLDK 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 T+G+L++ + + + L++Q + +++ Y A+ G + EE ++ P+ Sbjct: 139 DTTGLLIIAKNDLSHQKLSEQLKNRTLRRTYWALCEGEIPWEEKRIEAPIGRHPINRKKM 198 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A+T+++ L + Y L+ + +TGR HQ+R H++HL P Sbjct: 199 AIVPY--GKIAITNFKVLERFK-----------GYTLISADLETGRTHQIRVHISHLGFP 245 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 I+GD +G + + FG++ +LHA ++S HP G P+ L + + + L+ Sbjct: 246 IVGDEVYGRID------KKFGVKGQLLHAKKVSFIHPTKGIPMEFEIDLPEEFKKVLTLL 299 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 104/244 (42%), Gaps = 23/244 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 L++L++DE ++ +NK +G VH + ++D +V ++ D G HRLD+ Sbjct: 106 LDVLFEDEHIIVLNKSAGLTVHPAPGNKDGTLVNGLLHHCPDLPGISGKLRPGIVHRLDK 165 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG +++ S EA L Q ++ + Y A+V G + + + Sbjct: 166 DTSGCIVVAKSQEALVKLQVQIQKRVASREYFAVVHGVPDGDSGTIIGAVGRHPVDRKKY 225 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 D+ + A TH+ + Y L+ + TGR HQ+R H AH+ HP Sbjct: 226 AVVSDESGRYARTHWTLIERF-----------GDYSLLRFKLDTGRTHQIRVHCAHINHP 274 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD + R+ L LHA QL L HP TGE + A L + L Sbjct: 275 VVGDPTYSRCRKLP-----LDLPGQALHAVQLGLDHPITGERMVFEAPLPPVMEKLLLVL 329 Query: 235 GWRG 238 R Sbjct: 330 RRRS 333 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 124/269 (46%), Gaps = 28/269 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQT-----VRDQIGQHVFTAHRLDRP 56 L++LY D ++ +NKP+G +H + D +V +R G HRLD+ Sbjct: 93 LKLLYLDGDVLVLNKPAGLTIHPASSQPDGTLVNRLLHHFPDMRAMAGDRPGIVHRLDKD 152 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKF 115 TSG+LL+ + A LA F + ++ K Y A+V G + V++ P+ + K K Sbjct: 153 TSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPERSDGVIELPVGRDP-KHPTKM 211 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A KG + A + ++ T P L+E+ TGR HQ+R H+A + HPI Sbjct: 212 AVVAKGGREAKSSWKLAWTA---------PDGTASLLEVAIATGRTHQIRVHMAAMGHPI 262 Query: 176 IGDSKHGDLRQN----RSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +GD+ +G + + R GA +R MLHA +L+ +HP TGE L+ + Sbjct: 263 VGDAVYGARQHSDWTRRGGAMARLAKRQMLHAWKLAFSHPGTGEELSFCQPPPADF---- 318 Query: 232 SQFGWRGLLPENERVEFSAPSGQDGEISS 260 WR LL R + G G S Sbjct: 319 ----WRLLLMLGRRCQRVGLVGMPGCGKS 343 >UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BSG2_DESAD Length = 549 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 114/269 (42%), Gaps = 28/269 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQT-----VRDQIGQHVFTAHRLDRP 56 LEI+Y D + +NKP+G H + +V +RD HRLD+ Sbjct: 94 LEIIYNDGKIAVINKPAGLTTHPAPSCPTGTLVHRMIHHFPEIRDMDEWRPGIVHRLDKF 153 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKF 115 TSG++ + L+ ++ F ++ K Y AIV G E +D P+ K Sbjct: 154 TSGLITVALNEHDRLAMSTAFADREVNKAYLAIVHGVPKREFGEIDQPMGRHPVH-KTKM 212 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A KG + A + Y L + P R LV+++ TGR HQ+R H+AH+ HP+ Sbjct: 213 AVVLKGGRDARSEYEVLWSD---------PAGRASLVKVKIYTGRTHQIRVHMAHIGHPL 263 Query: 176 IGDSKHGDLRQNRSGAEHFGL----QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +GD +G + + L +R MLHA LS THP + E L+ + ++ L Sbjct: 264 VGDQVYGSMPHAIWEQDQPQLAKLAERQMLHAYSLSFTHPDSEEELSFTQAPPEDFINML 323 Query: 232 SQFGWRGLLPENERVEFSAPSGQDGEISS 260 ++ V+ G S Sbjct: 324 KAL--------DKSVQRVGLIGMPCGGKS 344 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 109/248 (43%), Gaps = 22/248 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+ILY+DE + +NKP+G +VH + D +V RD HRLD+ TS Sbjct: 90 LDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKDTS 149 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 GV+++ + +A L +Q Q+ ++Y A+V L+ ++ + + Sbjct: 150 GVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHPRDRLRMEVSD 209 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + AVTHYR + +E TGR HQ+R H+AHLRHPI+GD Sbjct: 210 --TGKEAVTHYRLRERFRA-----------HTALECRLDTGRTHQIRVHMAHLRHPIVGD 256 Query: 179 SKHGDLRQNRSG------AEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G + G A G +R LHA L HP P+ I A + + Q L+ Sbjct: 257 RLYGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVPEDLCQLLA 316 Query: 233 QFGWRGLL 240 L Sbjct: 317 ALREDSAL 324 >UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM35_9FIRM Length = 308 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 26/239 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-------GQHVFTAHRLD 54 L+ILY+D ++ +NK G +VH + + +V + HRLD Sbjct: 80 LDILYEDNDMIVINKRRGVVVHPGAGNTEGTLVNALLFHCGEQLRSVGDPERPGIVHRLD 139 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 + TSGV++ S A +L ++ H+ Q+ Y A+V G + + V+ PL K Sbjct: 140 KDTSGVMVAAKSERAYGILQKEIASHKAQRCYIALVHGQMEGDTGVIRLPLGR-STKDRM 198 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K+ + +PAVTH+ + + Y +E + +TGR HQ+R H+AH+RH Sbjct: 199 KWDVLHETGRPAVTHFHVIEYL-----------PHYSWIECKLETGRTHQIRVHMAHIRH 247 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 ++ D +G + +HF ++ LH+ L L HP TGE + A + + + L+ Sbjct: 248 AVVNDPLYGWKK------DHFPIKGQALHSHTLELCHPITGEVMHFEAPVPEDMINCLN 300 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 22/247 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV---FTAHRLDRPTS 58 L ILY D+ ++ +NKP+G +VH + + D ++ +H+ HRLD+ TS Sbjct: 86 LNILYADDDIIVINKPAGLVVHPAVGNHDNTLLNALLYHFPQTKHLPRSGIVHRLDKDTS 145 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G +++ S+ A L +Q + + + Y A+V G++ +D P+ R Sbjct: 146 GAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITAGDTIDLPIGRHAKDRLKMAVRP 205 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D +PA+THYR L+ ++ +TGR HQ+R HL+H RHP++GD Sbjct: 206 D--GKPAITHYRIEERW-----------QTLTLLRVQLETGRTHQIRVHLSHHRHPLVGD 252 Query: 179 SKHGDLRQNRSGAEHF------GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G S R LHA +L L HP T E + A L D Q + Sbjct: 253 KLYGARPFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFTAPLPDDMTQLFT 312 Query: 233 QFGWRGL 239 + Sbjct: 313 ILRAQNP 319 >UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=C6WV38_METML Length = 368 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 23/243 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD---QIGQHVFTAHRLDRPTS 58 L+I+Y+D+ ++ VNKP+G +VH + + D ++ HRLD+ TS Sbjct: 90 LDIVYEDDHILVVNKPAGMVVHPAAGNWDGTLLNALLFHAPQLHDVPRAGIVHRLDKETS 149 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+L++ + A L +Q + +++ Y AIV G L V+D PL + Sbjct: 150 GLLVVAKTLNAQTHLVRQLQARTVKREYRAIVWGQLWRNGVVDQPLGRDPRSRTKMAI-- 207 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 ++ +PA+T Y L + + +TGR HQ+R H+ HL+ P++GD Sbjct: 208 NRMGKPAITRYEILERFSVQ-----------TYLRCNLETGRTHQIRVHMQHLKAPLVGD 256 Query: 179 SKHG--DLRQNRSGAEHF-----GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +G + R+ + R LHA +L L HP T E + L D L Sbjct: 257 PVYGFRGIVPIRAMTQTLRDAVSQFHRQALHAIKLGLVHPATNEFMEWQIELADDMKVLL 316 Query: 232 SQF 234 Sbjct: 317 EAM 319 >UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9J0_MAGSM Length = 332 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 32/253 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-------------HVF 48 LEIL++DE L+ +NKP+G +VH +V Sbjct: 87 LEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYHCGTPDNPHGGLSGIGGVIRPG 146 Query: 49 TAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEE 107 HRLD+ TSG+++ A L++QFEQ I +RY A+ RG + ++ + Sbjct: 147 IVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRTIGRRYLALTRGIPQPAQGRIEGAIGRH 206 Query: 108 LDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 K A ++G + A T Y+ L P ++ L+ ++GR HQ+R H Sbjct: 207 PIH-RTKMAVVEQGGRAAATRYKVLE-----------PLGQFALIRCRLESGRTHQIRVH 254 Query: 168 LAHLRHPIIGDSKHGDLRQNRSGAEHFG------LQRLMLHASQLSLTHPFTGEPLTIHA 221 + H+ HP++GD +G + S QR LHA L+ HP TGE ++ Sbjct: 255 MTHIGHPLVGDPLYGAQHKAPSHWPPLHRQRFDQFQRQALHAHTLTFIHPHTGEEMSFKR 314 Query: 222 GLDDTWMQALSQF 234 + Q Sbjct: 315 PPPADFRQLYETL 327 >UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID=A8GQ59_RICAH Length = 329 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 21/244 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ------IGQHVFTAHRLDR 55 L+I+Y+D+ L+ +NK +G VH D+ +V + HRLD+ Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLYHTKNLSDIGSAARPGIVHRLDK 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 T+G++++ +++A LLA Q EQ Q+ ++Y A+V G + A + + K Sbjct: 139 DTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKALVWGVINPLAGVIKNNIGRSRVERQKM 198 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + G + AVTHY+ L +VE TGR HQ+R L+H++H + Sbjct: 199 SILKYGGKEAVTHYKTLELFY---------GGTISMVECRLNTGRTHQIRVQLSHVKHSV 249 Query: 176 IGDSKHGDLRQNRS------GAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 +GD +G+ + + A+ +R LH+ LS THP + + + L Sbjct: 250 VGDQTYGNNDRKIAHSSPALKAKLIDFKRQALHSWYLSFTHPTSNKIMEFSCELPRDMEA 309 Query: 230 ALSQ 233 ++ Sbjct: 310 IIAT 313 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 266 bits (681), Expect = 5e-70, Method: Composition-based stats. Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 30/254 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ-----IGQHVFTAHRLDRP 56 L+++Y+D L+ VNKP G +VH + ++ + + HR+D+ Sbjct: 132 LDVVYEDSDLMVVNKPPGMVVHPGHGNYSGTLINALLFHVKDLPLNADERPGLVHRIDKD 191 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKF 115 TSG+L++ +++A LA+QF ++ Y AIV G + EE + + Sbjct: 192 TSGLLVVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNVEEEQGTVRGHIGRHPKNRLQMA 251 Query: 116 AREDKG-PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 D + AVTHY+ + + LV +TGR HQ+R H+ H+ H Sbjct: 252 VFPDGDQGKEAVTHYKVMERLGYV-----------TLVSCVLETGRTHQIRAHMKHIGHT 300 Query: 175 IIGDSKHGDLRQNRSGA----------EHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 + D ++G + + L R LHA L HP +GE + + + Sbjct: 301 LFNDERYGGEKILKGTTFTKYKQFVDNAFKALPRQALHAKTLGFVHPSSGELMRFNTPIP 360 Query: 225 DTWMQALSQFGWRG 238 + + + + WR Sbjct: 361 EDMVLCIEK--WRA 372 >UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q0BWH2_HYPNA Length = 341 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 26/257 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG-----QHVFTAHRLD 54 LEIL++D LV +NK +G VH + + +V ++ + Q+ + HRLD Sbjct: 81 LEILFEDAHLVILNKAAGMAVHPAPGSQTGTLVNALLHHCQGQLSGIGGVERPGIVHRLD 140 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVE---ELDK 110 + TSGV++ + A LA FE+H I + Y A+ RG ++ + + K Sbjct: 141 KLTSGVMVAAKTESAHTGLAALFERHDIDRVYRAVTRGAPRPLSGTIEAAIARSESDRKK 200 Query: 111 IADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 ++ + + AVTHY+ + T R P L+E +TGR HQ+R H+AH Sbjct: 201 MSVHRNPDSPAARHAVTHYKAVETFGYKDRATRLPA--AALLECRLETGRTHQIRVHMAH 258 Query: 171 LRHPIIGDSKHG-------------DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPL 217 P+IGD +G + R +++ A R LHA+ L HP TGE L Sbjct: 259 SGAPLIGDPVYGRQAGIMAWKAPGSEARYDKALAAARAFSRQALHAAVLGFVHPITGETL 318 Query: 218 TIHAGLDDTWMQALSQF 234 A L + ++ Sbjct: 319 RYEAPLPEDMTGLIAAL 335 >UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desulfovibrio RepID=B8J173_DESDA Length = 525 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 78/265 (29%), Positives = 112/265 (42%), Gaps = 29/265 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-----GQHVFTAHRLDRP 56 LE+L+QD+ LV NKP+G VH ++ +V R GQ HRLD+ Sbjct: 80 LELLWQDDHLVVCNKPAGLTVHPCPSCPEQTLVQRLLGRFPQLSRLEGQRPGIVHRLDKD 139 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELD-KIADKF 115 TSG+L++ L+ LA F + Q+ K Y A+V G E PL KI Sbjct: 140 TSGLLVVALTEADCLALAAAFAERQVHKEYLALVSGLPPLEGQCREPLGRHPTAKIKMAV 199 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 ED+G + A T +R L + L+ + TGR HQ+R H+ HL +P+ Sbjct: 200 VPEDQGGRNAFTEWRRLWNTD---------DGSVSLLAVRIHTGRTHQIRVHMTHLGYPL 250 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD + A R MLHA +L THP +GE + A Sbjct: 251 LGDRLY------APKAVQNMAPRQMLHAWRLGFTHPASGEDMRFTCPPPHDMPDA----- 299 Query: 236 WRGLLPENERVEFSAPSGQDGEISS 260 L +R++ +G G S Sbjct: 300 ---ALAAMQRMQRLVITGNPGSGKS 321 >UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRN0_CLOBO Length = 302 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 115/237 (48%), Gaps = 24/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQH-VFTAHRLDRPTS 58 L+I+Y+D ++ VNKP G +VH + + + V+ D+ V +RLD TS Sbjct: 83 LDIIYEDNDIIVVNKPKGIVVHPTKRHLNGTLSNGVLYYFNDKNENSIVRLVNRLDMDTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G++L+ ++ + L++ ++ K+Y AIV G E+ V+D P+ + + Sbjct: 143 GLVLIAKNAYSHMALSRDMQKDDFVKKYLAIVHGNFNEDSGVIDKPIYRVGEGTLKRII- 201 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D+ Q ++T ++ + + LVEL +TGR HQ+R HL+ + HPI G Sbjct: 202 -DERGQRSITLFKVIEQYK-----------NASLVELTLETGRTHQIRVHLSSIGHPIYG 249 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 DS +G+ E + R LHA +L + HP G+ L + + L + + + Sbjct: 250 DSLYGE-------EEPQYIDRQALHAYKLQIPHPKDGKILKLESSLPEDMKNLIRKL 299 >UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZH07_BREBN Length = 306 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 25/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV---MQTVRDQIGQHVFTAHRLDRPTS 58 L I Y+DE L+ + KP+G +VH + + + + +RLD+ TS Sbjct: 81 LSIRYEDEDLMVIAKPAGLVVHPTGNHPSGTLANGMIAYWKKRGENRKFRAVNRLDKDTS 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAR 117 G++++ + A ++ + +Q+ Y AIV+G + ++ ++ P+ + + R Sbjct: 141 GLMIVAKNQWAHEQFSRMQQIRTLQRTYRAIVQGIVESDDGTINTPIGLAENSFITRQVR 200 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q AVTHYR LA E VE++ +TGR HQ+R H++ HP+ G Sbjct: 201 PD--GQTAVTHYRVLARGE-----------GMSFVEVKLETGRTHQIRVHMSSEGHPLAG 247 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D +G R++ + R LHA LS HP +G ++ L + Q QF Sbjct: 248 DDLYGGEREH--------IGRQALHAWGLSFVHPRSGLAMSWEEPLPNDMEQLAQQF 296 >UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1I9_DESRD Length = 547 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 120/268 (44%), Gaps = 27/268 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV-MQTVRDQI----GQHVFTAHRLDRP 56 +E++Y D +V VNK +G VH +V + + ++ G+ HRLD+ Sbjct: 91 VEVVYSDPDVVVVNKAAGVTVHPGTGCESGTLVHHLAALYPELARFDGERPGVVHRLDKD 150 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 TSG+L + L+ A L + F + ++ K Y +V G E +D+PL + + A Sbjct: 151 TSGLLTVALNESARLALTRSFARREVDKEYLTLVHGRPEAEGTVDHPLGRDPQSKI-RMA 209 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 +G + A+T ++ + T P R L+ + TGR HQ+R H+A+L P++ Sbjct: 210 VVPRGGKEALTRFKRVWT---------SPDGRVSLLRVRILTGRTHQIRVHMAYLGFPLV 260 Query: 177 GDSKHGDLRQNRSGAEHFGLQRL----MLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 GD+ +G Q L RL MLHA +L+ HP +G + + Sbjct: 261 GDALYGPQAQAAFQRSRPLLARLAKHHMLHAWRLAFPHPRSGRMVCCEQAMPKAM----- 315 Query: 233 QFGWRGLLPENERVEFSAPSGQDGEISS 260 WR +L RV+ +G G S Sbjct: 316 ---WRLVLGCGRRVQRVGLTGMPGCGKS 340 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 23/245 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ----HVFTAHRLDR 55 L++L++DE L+ +NKP+G VH + ++D +V ++ D G HRLD+ Sbjct: 88 LDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHCPDLPGISGKLRPGIVHRLDK 147 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 T+G +++ S +A L Q ++ + Y A+V G E + + Sbjct: 148 DTTGCIVIAKSQQALVKLQVQIQKRVASREYLAVVHGVPAGESGTIVGAIGRHPVDRKKY 207 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A TH+ + Y L+ + TGR HQ+R H AH HP Sbjct: 208 AVVSSDNGRYACTHWSLQERL-----------GDYSLLRFKLDTGRTHQIRVHCAHRNHP 256 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD + R+ L LHA QL L HP TGE + A L + + L+ Sbjct: 257 VVGDPTYSRCRKLP-----IELPGQALHAVQLGLDHPITGERMVFEAPLPEVLEKLLAVL 311 Query: 235 GWRGL 239 R Sbjct: 312 RKRAA 316 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 116/267 (43%), Gaps = 33/267 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQI-----GQHVFTAHRLD 54 + ++Y+D+ L+ VNK +G +VH + ++ V +RD V HR+D Sbjct: 131 INVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVAWHLRDMPEFDANDPEVGLVHRID 190 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEEL-DKIA 112 + TSG+L++ + A L +QF + Y+A+V G ++E E ++ + + +++ Sbjct: 191 KDTSGLLVVAKTPTAKNALGKQFFNKTTHRSYNALVWGNIVEDEGRIEGNIGRDPKNRLR 250 Query: 113 DKFAREDKG-PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 K D G + AVTHY+ L LV+ +TGR HQ+R H+ H+ Sbjct: 251 MKVFDPDSGIGKTAVTHYKVLERFGYT-----------TLVQCVLETGRTHQIRAHMKHI 299 Query: 172 RHPIIGDSKHGDLRQNRSGAEHF----------GLQRLMLHASQLSLTHPFTGEPLTIHA 221 HP+ D +G R R LHA L HP T + + + Sbjct: 300 GHPLFMDETYGGTEILRGQRSSSYKAFIQNCFKLCPRQALHAKTLGFVHPTTKQQMDFDS 359 Query: 222 GLDDTWMQALSQFGWRGLLPENERVEF 248 + + Q + + WRG + + F Sbjct: 360 EWPNDFRQLIEK--WRGFIAGTTQDTF 384 >UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPR1_9RICK Length = 325 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 21/248 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG-----QHVFTAHRLD 54 L I+++D+ ++ ++KP G +VH + ++ +V ++ ++ + HR+D Sbjct: 81 LNIIFEDQDIIIIDKPIGMVVHPGAGNYEDTMVNGLLYHCKNNLSGMNGEDRPGIVHRID 140 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 + TSG+L++ + +A +A+QFE+H I++ Y V G L ++ + Sbjct: 141 KDTSGLLVVAKNDQAHAFIAKQFEEHSIKRSYLVFVYGILRPLHGKIETLIGRNKTN-RQ 199 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K + + + A+T+Y L + LV+ +TGR HQ+R H++H + Sbjct: 200 KMSADVIRGKDAITNYETLEVFK------GNKIPDISLVKCILETGRTHQIRVHMSHKGN 253 Query: 174 PIIGDSKHGDLRQNRSGAEHF------GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 PI+GD +G + G + L+R LHA L HP T E + + L D Sbjct: 254 PILGDQTYGKKIKKIRGIDQEFEEILKSLKRQALHAHTLGFIHPTTNEEVFFASELPDDL 313 Query: 228 MQALSQFG 235 + ++ Sbjct: 314 NKLKNRLE 321 >UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=D0KVM5_HALNC Length = 340 Score = 264 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 22/242 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+I+Y+D+ ++ +NK +VH + + D +V D HRLD+ TS Sbjct: 81 LDIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNALLFHDPSLVSVPRAGVVHRLDKQTS 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 GV+++ + A ++L + +I++ Y +V G ++ +D P+ + Sbjct: 141 GVMVVAKTLAAHKILVENLAARKIRREYDTVVMGHVVAGGTVDAPIGRHPRDRQRQAVT- 199 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + AVTHYR L + ++ +TGR HQ+R H+AH+RHP+IGD Sbjct: 200 -ATGKRAVTHYRVLQHY-----------GEQTWLRVQLETGRTHQIRVHMAHIRHPVIGD 247 Query: 179 SKHGDLRQNRSGAEHFGLQ------RLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G + A + R LHA L+L HP TG + A + D + ++ Sbjct: 248 PVYGGRPRIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQMRFEAPMPDDMRELIA 307 Query: 233 QF 234 Sbjct: 308 LL 309 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 31/253 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR--------DQIGQHVFTAHRL 53 + ILY+D+ L+ ++K +G +VH ++ + + D+ HRL Sbjct: 77 ITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKDADELDKTEMRPGIVHRL 136 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIA 112 D+ TSG++++ + A LA+QF Q++K Y AIV G E + + Sbjct: 137 DKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKAESGTIKTNIGRSHKNRK 196 Query: 113 DKFAREDKG--PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 +G + A+T Y+ + + + L+++ TGR HQ+R HL H Sbjct: 197 VMANFPYEGAEGKHAITDYQVVEDLGY-----------FSLMDVTLHTGRTHQIRVHLQH 245 Query: 171 LRHPIIGDSKHGDLRQNRSGAEH---------FGLQRLMLHASQLSLTHPFTGEPLTIHA 221 L H I+GD +G + R LHA L P TGEPL+ A Sbjct: 246 LGHSILGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFRQPTTGEPLSFSA 305 Query: 222 GLDDTWMQALSQF 234 L + L + Sbjct: 306 PLPEDMELVLEKI 318 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 32/252 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L+++Y+DE+L +NK +G +VH + + + +V R HRLD Sbjct: 89 LDVVYEDEYLAIINKKAGMIVHPGFGNPEGTLVNAILYRFGENLSSGKEFNRPGIVHRLD 148 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 R TSG++++ + L+ F + +I+K Y AI G E+ ++ L Sbjct: 149 RGTSGLIIIAKNDLTHAKLSDMFARREIKKTYFAITTGIPEPEKGEIETYLAR--SNKNP 206 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + + A+THY+ + T + LVE+ P TGR HQ+R H AH+R+ Sbjct: 207 RTICVTNEGRYALTHYKTIKTWHY-----------FALVEINPATGRMHQIRVHFAHIRY 255 Query: 174 PIIGDSKHGDLRQNRSGAEH-----------FGLQRLMLHASQLSLTHPFTGEPLTIHAG 222 PI+GD + R +S L+R LH+ +L HP TG P+++ A Sbjct: 256 PILGDLLYNSRRYVQSLVPQNMKKKVTELLVNHLRRQALHSWKLEFFHPITGYPISVSAP 315 Query: 223 LDDTWMQALSQF 234 + D L+ Sbjct: 316 IPDDIQYTLNWL 327 >UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBH1_9FIRM Length = 299 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 23/233 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV-MQTVRDQIGQHV--FTAHRLDRPTS 58 L I+Y+DE ++ +NKP+ VH S + + + + + G+ +RLDR T+ Sbjct: 81 LNIIYEDEDILVINKPADMPVHPSAGNYENTLANGIAWYFAEKGEDFVYRCINRLDRDTT 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G L++ + + +L+ Q ++ QI + Y A+V G L + ++ P+ + + Sbjct: 141 GALILAKNPLSAAILSVQMKKRQILRTYLALVDGLLPDSGTINAPIARMEGSVITREVNF 200 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + A+THY LA Y L EL +TGR HQ+R H+ ++ HP+ GD Sbjct: 201 -GTGESAITHYERLA-----------AGKEYSLAELHLETGRTHQIRVHMKYIGHPLPGD 248 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + ++ + R LH+ QL THP TG+ + A L ++ A Sbjct: 249 YLYN--------PDYRRINRQPLHSYQLEFTHPTTGKVMLFTAPLPIDFISAF 293 >UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C n=110 Tax=Gammaproteobacteria RepID=RLUC_SALTY Length = 319 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 14/233 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D+ ++ +NKPSG VH + ++ +R + + + HRLDR TSGVLL+ Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPE-ARFLELVHRLDRDTSGVLLV 153 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 A R L +Q + +QK Y A+VRG W + PL++ + + ++ R + Sbjct: 154 AKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRVSQEG 213 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 +P+ T ++ LV P TGR HQ+R H + HPI D ++G Sbjct: 214 KPSETRFKVEERYAF-----------ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG 262 Query: 183 DLRQNRSGAEH-FGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D ++ E GL+RL LHA+ L THP TGE + I A +D+ + L Sbjct: 263 DREFDQQLTEAGTGLKRLFLHAAALKFTHPGTGEVMRIEAPMDNALKRCLQVL 315 >UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=C7RM94_9PROT Length = 375 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 18/241 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV---VMQTVRDQIGQHVFTAHRLDRPTS 58 L I+++D+ L+ ++K +G +VH + ++ + + HRLD+ T+ Sbjct: 107 LRIVFEDDTLIVLDKQAGLVVHPGSGNWRGTLLNGLLHHAPQLARVPRAGIVHRLDKDTT 166 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + EA L +Q + +++ Y A+VRG + ++D P+ + + A Sbjct: 167 GLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIVEGAGIVDAPIGRHP-TVRTRMAVV 225 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 G +PA THYR L L+E +TGR HQ+R H+ + HP++GD Sbjct: 226 S-GGRPARTHYRVLERFVAC-----------TLIECALETGRTHQIRVHMTSIAHPLVGD 273 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 +G F R LHA +L+L HP +G+ + +G+ + + Sbjct: 274 PIYGGGASRVPQGAVF--PRQALHACRLALVHPASGKAMLWRSGVPADMAALIDRLRLES 331 Query: 239 L 239 L Sbjct: 332 L 332 >UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q5QZ45_IDILO Length = 315 Score = 262 bits (670), Expect = 9e-69, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 14/232 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D+ L+ +NKPSG VH + + ++ +R + + + HR+DR TSG+LL+ Sbjct: 94 ILYEDDALMLINKPSGVAVHGGSGLQFGLIEGLRALRPK-EKSLELVHRIDRDTSGLLLV 152 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 R L +Q ++ K+Y A+VRG W ++ PL + K ++ R D Sbjct: 153 AKKRSVLRSLHEQLRNKEMNKQYLALVRGQWQKRVRSVEAPLKKNTLKSGERIVRVDAEG 212 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + ++T +R + LVE P TGR HQ+R H H HPI D K+G Sbjct: 213 KASLTRFRIQQRYKEG-----------TLVEASPVTGRTHQIRVHALHAGHPIAKDPKYG 261 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D + + + GL RL LHA QL HP TG+ + A LDD Q L Q Sbjct: 262 DTDFDNTMS-RLGLNRLFLHAWQLRFLHPVTGKEVAFEAPLDDNLQQTLKQL 312 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 71/258 (27%), Positives = 112/258 (43%), Gaps = 28/258 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV-----VVMQTVRDQIGQ-HVFTAHRLDR 55 L+ILY DE+L +NK + +VH + + ++ D GQ HRLDR Sbjct: 91 LDILYDDEYLCVINKTANMIVHPGRGNYRGTLAGALQFHFDSLSDVAGQYRAGIVHRLDR 150 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSGVL++ + + L++QFE+ ++K YHAIV G + + ++ + Sbjct: 151 DTSGVLVVAKDNTVHQHLSRQFEERSVEKEYHAIVWGEMQFDADYVETYVRVSFRNRERM 210 Query: 115 FAREDK-GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + A T Y + V+L+P+TGR HQLR H+ HL H Sbjct: 211 MVCPPGDNARQAATFYEVQQRFR-----------GFTYVKLQPQTGRTHQLRVHMHHLGH 259 Query: 174 PIIGDSKH-GD--------LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 PII D + G L + A+ + R LHA +L+ HP T + + A L Sbjct: 260 PIIADRLYEGKTCVKLSDILPETPEEADETLIDRQALHARRLAFNHPVTKKRMVFEAPLP 319 Query: 225 DTWMQALSQFGWRGLLPE 242 + + L + P+ Sbjct: 320 ADFQKTLDTLKTHAIKPK 337 >UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=Q1J0S8_DEIGD Length = 341 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 87/263 (33%), Positives = 119/263 (45%), Gaps = 33/263 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR----------DQIGQHVFTAH 51 L++LY+DE L+AVNKP G + H + +V R G H Sbjct: 97 LDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRLTLPEQPGAVGPDGYRPGIVH 156 Query: 52 RLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA--VLDYPLVEELD 109 RLD+ TSGV+++ + EA LA F+ K Y AI G + ++ P+ Sbjct: 157 RLDKDTSGVIVVAKTVEAHARLAAAFKDRSTHKTYLAIAAGMWKAQGPVSVNAPVGRHP- 215 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 + GP+ A T + LAT P GR LV +P TGR HQ+R HLA Sbjct: 216 TARQRMTVGGVGPREAQTLFTPLAT--HPDGHGR----TLALVRAQPHTGRTHQIRVHLA 269 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 HL PI+GD+ +G + R LHA L+L HP TGE L +HA + D ++ Sbjct: 270 HLGSPILGDAVYG--------RASAVMPRHALHAQFLTLPHPVTGETLHLHAPVPDDLLR 321 Query: 230 ALSQFGWRGLLPENERVEFSAPS 252 A G G +P E APS Sbjct: 322 AWVALG--GAVP----AELEAPS 338 >UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=Q2SS88_MYCCT Length = 322 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 109/240 (45%), Gaps = 25/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDR 55 L I+YQD+ L+ +NK + VH S + + +V D HR+D+ Sbjct: 95 LNIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLASDVELSSINGELRPGIVHRIDK 154 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 T+G+L++ + + +LL++ F+ HQI K Y AIV G + + ++D P+ K Sbjct: 155 QTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGVIKPNKGLIDAPIGRSQTD-RKK 213 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + K + A+T + + + L++ + +TGR HQ+R H ++ HP Sbjct: 214 MSVTAKNSKHAITTFEVVERF-----------LKNTLIKCQIQTGRTHQIRVHFNYINHP 262 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++ D +G Q + LHA +L THP T + + + + L + + + Sbjct: 263 VLNDPIYGKKHQEFTDF------GQYLHAYKLKFTHPITKKEIELISPLPKEFDDKIKEL 316 >UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB3_THEAS Length = 320 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 24/236 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG------QHVFTAHRLDR 55 ++YQD+ LV V+KP+G +VH + +V R + HRLD Sbjct: 96 FRVVYQDQDLVVVDKPAGLVVHPAPGHWRGTLVHGLLYRYPDLMELNGVKRPGIVHRLDA 155 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG++++ + A L + F+ ++ K Y A+ G L E + P+ + D + Sbjct: 156 TTSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMAAGTLRGEGSVSLPIGRDPDN-RKRM 214 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A G + A+T YR + + Y LV + KTGR HQ+R H+ L HP+ Sbjct: 215 ACVPWG-REALTRYRVI-----------WSRGGYSLVACQIKTGRTHQIRVHMRSLGHPL 262 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +GD +G E F L R+ LH+ +L HP TG P++ L ++ + Sbjct: 263 VGDRIYGG-----PCPEGFPLGRVFLHSWRLEFDHPRTGAPMSFICPLPPDLVRFI 313 >UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibrioides RepID=B8GZR6_CAUCN Length = 342 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 95/237 (40%), Gaps = 18/237 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L ILY+D L+ V+K +G VH + + +V HRLD Sbjct: 103 LSILYEDAHLIVVDKAAGMAVHPAPGTYNGTLVNALLHHCGASLSGVGGVARPGIVHRLD 162 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 + TSGV++ S A R L+ F H I + Y A+ RG + + Sbjct: 163 KDTSGVMVAAKSDAAHRGLSTLFATHDIDRLYVALTRGAPNPPTGTIQTQIGRSPGD-RK 221 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K A G + A+THYR A G V +TGR HQ+R H+A Sbjct: 222 KMAVLRAGGREAITHYRVEAAF------GPADRPLAARVACRLETGRTHQIRVHMASKGS 275 Query: 174 PIIGDSKHGDLRQNRSGAEHF---GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 P +GD +G + + E GL+R LHA+ L HP TGE L L Sbjct: 276 PCLGDPVYGAAQPAAAVRERIEAAGLRRQALHAAVLGFVHPITGETLRFETPLPADM 332 >UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AW00_RUTMC Length = 314 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 22/243 (9%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD---QIGQHVFTAHRLDRPT 57 +++++Y+DE ++ VNKP + H + + D HRLD+ T Sbjct: 79 VIDVVYEDEAIIIVNKPVNLVTHPGVSNWTGTLANALLHYDSSLANLDRAGIVHRLDKNT 138 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAR 117 SG++++ S A + L +Q + H I + Y AIV G ++ +D P+ + + Sbjct: 139 SGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYGHMISGGTVDKPIGRDPKDRIRQTVT 198 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 E + A+THYR + + V++ +TGR HQ+R HL+ + HP+I Sbjct: 199 ES--GKDALTHYRVIERF-----------AHHTHVKVMLETGRTHQIRVHLSFIGHPLIA 245 Query: 178 DSKHGDLRQNRSGAEH------FGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 D +G + A+ R LHA +L+L HP + E ++ L L Sbjct: 246 DPMYGGKIRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTELMSWKVPLPQDMQDLL 305 Query: 232 SQF 234 Sbjct: 306 QVL 308 >UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepID=A0Q1S9_CLONN Length = 301 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 24/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH---VFTAHRLDRPTS 58 L+++Y+D+ +V +NKP G +VH + ++ + + V +RLD TS Sbjct: 83 LDVIYEDKDIVVINKPKGIVVHPTKRHQNGTLSNGVLYYFKEKNENSIVRLVNRLDMDTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G++L+ ++ + L++ ++ K Y AIV G L E+ V++ P+ + + Sbjct: 143 GLVLIAKNAYSHMALSRDMQKDDFVKSYLAIVHGNLKEKSGVINKPIYRVGEGTLRRVI- 201 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D+ Q +VT ++ + + E LVEL +TGR HQ+R HL+ + HPI G Sbjct: 202 -DERGQRSVTRFKVVESYEDAD-----------LVELTLETGRTHQIRVHLSSIGHPIYG 249 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 DS +G EH + R LHA +L + HP G L + + L D +S+ Sbjct: 250 DSLYGK-------EEHEYIDRQALHAYKLQIPHPKDGRILKLESDLPDDMKNLISKL 299 >UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT n=5 Tax=Bacillus RepID=YHCT_BACSU Length = 302 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 23/237 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+IL++D ++ +NKP+G H + + + + QI V HRLD+ TS Sbjct: 83 LDILFEDNHMLIINKPAGIATHPNEDGQTGTLANLIAYHYQINGETCKVRHVHRLDQDTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G ++ A +L QQ E+ +++ Y AI G L ++ ++ P+ + + R Sbjct: 143 GAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKLRTKKGTINSPIGRDRSHPTRR--R 200 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 G Q AVTH++ +A+ R LVELE +TGR HQ+R HLA L HP+ G Sbjct: 201 VSPGGQTAVTHFKVMAS---------NAKERLSLVELELETGRTHQIRVHLASLGHPLTG 251 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 DS +G + L R LHA+++ HP T E + A + Sbjct: 252 DSLYGGGSK--------LLNRQALHANKVQAVHPITDELIVAEAPFPADMKNLCRTY 300 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 28/242 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-------DQIGQHVFTAHRLD 54 L I+Y+D+ ++ +NKP G +VH S + +V + HR+D Sbjct: 76 LNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLHHTDTLSTHNDDPLRPGILHRID 135 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 + TSG++L+ ++EA ++LAQ + H I++ Y A+V G L + V+D P+ KI Sbjct: 136 KDTSGLILVAKTNEAHKILAQDLKSHDIKREYIALVEGVLDHNKGVIDAPIARHP-KIRT 194 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K A +PA+TH+ + T + L+ + +TGR HQ+R HLA+++H Sbjct: 195 KMAVV-ATGKPAITHFEVMRTFR-----------DHTLLHCKLETGRTHQIRVHLAYIKH 242 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P+ GD +G +LHA +L HP T + + + A L + L Sbjct: 243 PVTGDPLYGTKA-------KILKDGQLLHAFRLEFVHPITKKVMMLEAPLPPEFESYLVT 295 Query: 234 FG 235 G Sbjct: 296 LG 297 >UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N8_9BACT Length = 323 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 111/246 (45%), Gaps = 20/246 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ--------IGQHVFTAHRL 53 ILY+D+ ++ ++KP+G +VH + + VV R HRL Sbjct: 83 FPILYEDDVMLVIDKPAGVVVHPAAGNPTGTVVNALLGRYPQLAEQLACTTSRPGIVHRL 142 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIAD 113 D+ TSG L + ++ A L+ F + +K Y AI RG + + L+ Sbjct: 143 DKDTSGCLAVAKTANAQFKLSTAFAGRETRKTYLAITRGVPIRRSGELSTLIGRHPVSRQ 202 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K A ++ + A+T YR TG G++ + TGR HQ+R HLA L Sbjct: 203 KMAVVERNGKLAITRYRV-------EYTGMLDGVEIGVLAVRILTGRTHQIRVHLASLGV 255 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++GD+ +G R +G E R +LHA +L + HP TG P+ A + + L + Sbjct: 256 PVLGDAVYGGARTAVAGVE-----RQLLHAWKLCVPHPATGTPMEFTAPPPEDIRRILER 310 Query: 234 FGWRGL 239 G + L Sbjct: 311 IGVKTL 316 >UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D n=4 Tax=Buchnera aphidicola RepID=RLUD_BUCAP Length = 315 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 23/240 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD---QIGQHVFTAHRLDRPTS 58 L +Y+D ++ +NKP G +VH ++D ++ R HRLD+ TS Sbjct: 84 LNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISSIPRCGIIHRLDKDTS 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + + L ++ +I ++Y I++G ++ +++YP++ Sbjct: 144 GLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISGGIVNYPIMRHP--FKRICMTT 201 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D + ++THY+ + + + V +TGR HQ+R H+ H+ +P++GD Sbjct: 202 DSLGKKSITHYKIINRFKF-----------HTHVSFRLETGRTHQIRVHMLHIGYPLLGD 250 Query: 179 SKHGD-------LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +G ++NR+ F L R LHA + HPFT + ++ A L L Sbjct: 251 PLYGGIDYGCNYFQENRNIYRKFNLFRQALHADYIEFIHPFTQKVMSWSASLPQDMKDIL 310 >UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacteria RepID=Q13E92_RHOPS Length = 426 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 114/252 (45%), Gaps = 26/252 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 LEI+++D+ ++ ++KP G +VH + +V + HRLD Sbjct: 178 LEIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCGESLSGIGGVRRPGIVHRLD 237 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQH----QIQKRYHAIVRGWLME-EAVLDYPLVEELD 109 + T+G+++ + A + L+ QF H ++++ Y+A V G +D P+ Sbjct: 238 KDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYYAFVWGAPNRIRGTIDAPIDRHPH 297 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 R+ G + A+TH+ L T TGR L+ + +TGR HQ+R HLA Sbjct: 298 AREKMAVRD--GGREAITHWEVLETF-----TGRSGGEIVSLIACQLETGRTHQIRVHLA 350 Query: 170 HLRHPIIGDSKHGDLRQNRSG-------AEHFGLQRLMLHASQLSLTHPFTGEPLTIHAG 222 H+ HP++GD +G + ++ A L R LHA L L HP TGE + +G Sbjct: 351 HIGHPLLGDDVYGPHFKTKASQLRPDARAALTDLGRQALHAYLLVLEHPSTGEVVAWESG 410 Query: 223 LDDTWMQALSQF 234 L + + Sbjct: 411 LPADLKRLKAAL 422 >UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D n=321 Tax=Gammaproteobacteria RepID=RLUD_ECOL6 Length = 326 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 22/240 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI---GQHVFTAHRLDRPTS 58 L+I+Y+DE ++ +NKP +VH + D V+ HRLD+ T+ Sbjct: 84 LDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTT 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + A L + ++ +I + Y A+ G + +D P+ K Sbjct: 144 GLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAV-- 201 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 +PAVTHYR + + + + L +TGR HQ+R H+AH+ HP++GD Sbjct: 202 HPMGKPAVTHYRIMEHFRV-----------HTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 Query: 179 SKHGDLRQNRSGAEHFGL------QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G + GA + R LHA+ L L HP +G + HA + ++ + Sbjct: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 >UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. JS666 RepID=Q126H9_POLSJ Length = 378 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 118/244 (48%), Gaps = 17/244 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +L++D++L+A++KP+G VH + ++ R Q + HRLDR TSG+L Sbjct: 126 FPVLFEDDFLLAIDKPAGVAVHGGSGVSFGVIEQLRMARPQ-ADFLELVHRLDRETSGIL 184 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVE--------ELDKIA 112 L+ A +LL +QF + + K Y A+V G W V+D L + E ++ Sbjct: 185 LIAKRRMALKLLQEQFRERETDKVYLALVSGNWPANHRVIDKALHKYLLPGGAGEGERRV 244 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + +VT + + A P T + L+E+ KTGR HQ+R HLA+ Sbjct: 245 KVVPNDHPDGMRSVTLVKVKSAFAALPAA---PGTPFTLLEVTIKTGRTHQIRVHLANEG 301 Query: 173 HPIIGDSKHGDLRQNRSGAEHF----GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 HPI GD K+GD N+S + L+R+ LHA L HP T + + + L D Sbjct: 302 HPIAGDDKYGDFELNKSLQKSVAGGAPLKRMFLHAWSLKFNHPKTRKTIHLETPLPDELQ 361 Query: 229 QALS 232 Q LS Sbjct: 362 QFLS 365 >UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J2_MAGSM Length = 328 Score = 259 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 15/237 (6%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG--QHVFTAHRLDRPTSGVLL 62 L++D W++ +NKP+G VH + V ++ +++G HRLD+ TSG+LL Sbjct: 101 LHRDGWILVLNKPAGIPVHGGSGHQWGVVDAVRASLEKLGIEAQAELCHRLDKETSGLLL 160 Query: 63 MGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAREDKG 121 GL A RLL + ++Q+ K Y +V+G + V++ PL + + ++ ++G Sbjct: 161 FGLRPRAVRLLTEAMRENQVTKTYLTLVQGVPAARQGVINQPLSKGNVRGGERMVVVEQG 220 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q AVTHYR L + + L+E++ +TGR HQ+R H+ L HP+ GD K+ Sbjct: 221 GQRAVTHYRVLRSYGV-----------ASLLEVQLETGRTHQIRVHMQWLGHPVAGDGKY 269 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 GD N+ E GL+RL LHAS+L+ HP + L A LDD + L + Sbjct: 270 GDKAFNKWMRER-GLKRLFLHASELAFRHPENEQKLAYQAPLDDELTRVLEGLKRQE 325 >UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAM3_PHATR Length = 325 Score = 259 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 11/234 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-----DQIGQHVFTAHRLDRP 56 L+I+++DE ++ +NK + +VH + + D VV + I HRLD+ Sbjct: 73 LDIIFEDEHMIVINKAANMVVHPAAGNWDGTVVNALAYYLANRSESISFRPGIVHRLDKG 132 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 T+GVL++ +S+ L+ F Q++K Y AI G + V+D P+ Sbjct: 133 TTGVLVVAKTSQTLATLSNFFAARQVKKTYMAITVGNPGKHVVIDKPIGRHPLHRQRMRV 192 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 D + + T R L+ V+ G+ LV++ +TGR HQ+R HL PI Sbjct: 193 VPDPHQKNS-TGRRALSYVDTLAFDGKL-----SLVQVRIETGRTHQIRVHLQDRHTPIY 246 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQA 230 GD +G N+ ++ + R +LHA +L + HP TGEP+ A L D + Sbjct: 247 GDDIYGLADWNKKLSKTHRIVRPLLHAYKLEINHPVTGEPMVFKASLADDMKRI 300 >UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nostoc azollae' 0708 RepID=B9YI75_ANAAZ Length = 329 Score = 259 bits (663), Expect = 6e-68, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 24/245 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG----QHVFTAHRLDR 55 L+ILY+DE L+ +NKP+G +VH + D +V ++ + G Q HRLD+ Sbjct: 99 LDILYEDEQLLILNKPAGLVVHPAPGHLDGTLVNALLAHCANLPGIGGVQRPGIVHRLDK 158 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEEL-DKIAD 113 T+G + + + A + L Q + ++ Y +V G E +++ P+ D+ Sbjct: 159 DTTGAIAIAKTDIAYQHLQAQLQAKTARREYLGVVYGVPKTESGIINLPISRHPQDRKKM 218 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 ++G + A+TH++ + + Y L+ + +TGR HQ+R H A + H Sbjct: 219 AIVPTEQGGRTAITHWQIRERL-----------SNYTLIHFQLETGRTHQIRVHSAKIGH 267 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GDS +G R + L LHA QL L HP +G+ + + A T+ L Sbjct: 268 PIVGDSVYGAGR-----SVGVNLAGHALHAWQLKLQHPISGDWIQVTASPPQTFTTLLEV 322 Query: 234 FGWRG 238 R Sbjct: 323 LRRRS 327 >UniRef50_C7LP91 Pseudouridine synthase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LP91_DESBD Length = 245 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 141/239 (58%), Gaps = 12/239 (5%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 + +L++DE L+AV+KP+G LVHR+ + ++Q +RDQ+GQ ++ HRLDRPTSG++ Sbjct: 9 IPVLHRDEHLIAVHKPAGLLVHRNA-HAGREPFLLQILRDQLGQRLYPVHRLDRPTSGLM 67 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 +M LS +A LA QF ++ K Y A+ RG++ + ++D L E + Sbjct: 68 IMALSPQAAHALALQFASQEVHKTYLAVTRGFVPPQGLIDDALKSESGSL---------- 117 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A T + LAT E+P G PT RY +V + P+TGR HQ+RRH AH+RHP+IGD Sbjct: 118 -QEARTEFTRLATAEIPHPVGPNPTARYSMVRVRPRTGRTHQIRRHFAHIRHPLIGDVLR 176 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 GD RQNR +HFGL RL+L + +L+ HP P+T+ + Q GW + Sbjct: 177 GDGRQNRFFRDHFGLHRLLLASVELTFRHPEDTSPMTLTCPPARELLDLFGQLGWNAAI 235 >UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobacterales RepID=B0K860_THEP3 Length = 285 Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 111/236 (47%), Gaps = 27/236 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L+I Y+DE ++ VNKP+ +VH + + + V + + +RLDR TS Sbjct: 74 LDICYEDEEILIVNKPANMVVHPTKRYQSGTLANGVAWYFKEKGLKALIRPVNRLDRGTS 133 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+++ L + K Y A+V G + E +D P+ + ++ E Sbjct: 134 GLVVFAKRPFMQYYLQII---KPMTKLYFAVVEGKMEGEGRIDLPISRKPQSGIERMVSE 190 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + A+T+Y+ + + + R+ L++++ +TGR HQ+R HL+H+ HPI+GD Sbjct: 191 E--GDRAITNYKVVKS-----------SKRFSLLKVKIETGRTHQIRVHLSHIGHPIVGD 237 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + +G ++R LHA +L+ HP + +++++ L L F Sbjct: 238 TLYGSSDDY--------IKRQALHAYRLTFVHPLEEKSISVYSPLPQDIQNLLKLF 285 >UniRef50_Q1QTG8 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q1QTG8_CHRSD Length = 261 Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats. Identities = 114/258 (44%), Positives = 148/258 (57%), Gaps = 7/258 (2%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L +LYQDE +VAV KPSG LVHRS + RD +V +QT+R+Q+G+HV+ HRLDRPTSG+L Sbjct: 5 LPVLYQDERMVAVQKPSGMLVHRSPIARDARVFALQTLRNQLGRHVYPVHRLDRPTSGLL 64 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L L E + L ++F H++ KRY A+VRG E+ +LDY L EE E Sbjct: 65 LFALDPEMAQALGEEFTAHRVHKRYLAVVRGVGPEQDLLDYGLREEDGSRPKAEMPE--- 121 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 A T R L +VE+PV RYP RY L+E P TGR+HQ+RRHLA +PIIGD+KH Sbjct: 122 -LEAWTAVRRLDSVELPVRIDRYPQVRYSLMEARPWTGRRHQIRRHLARRGYPIIGDAKH 180 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLP 241 G NR E RL+L A +++ HP L + A L D ++FGW+G P Sbjct: 181 GKGAHNRFFRERLDSPRLLLAAVGMTVWHPEQARTLQLDAPLADDMQALFARFGWQGHAP 240 Query: 242 ENE---RVEFSAPSGQDG 256 E A G Sbjct: 241 AARVAWHAERPAALLSPG 258 >UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=Q03WF6_LEUMM Length = 312 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 23/228 (10%) Query: 13 AVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-----HVFTAHRLDRPTSGVLLMGLSS 67 VNKP G +VH + +V + HR+DR TSG+L++ + Sbjct: 90 VVNKPQGMVVHPAAGHSSGTLVNALLHHSPLSTINGEFRPGIVHRIDRDTSGLLMVAKND 149 Query: 68 EAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAREDKGPQPAV 126 +A R L++Q + H+ Q+ Y+A+VRG E+ ++ P+ KI K +G + AV Sbjct: 150 KAHRSLSEQLKSHKNQRVYYALVRGEFTEDSGTIEAPIGRH--KIDRKKQAVIEGGREAV 207 Query: 127 THYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQ 186 TH+R L Y L+++ +TGR HQ+R H++++ HP++GD +G ++ Sbjct: 208 THFRVLKRY-----------VGYTLLKVSLETGRTHQIRVHMSYIGHPVVGDPVYGTAQK 256 Query: 187 NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + L +LHA L+L P TG+ L+ + L D + ALS Sbjct: 257 ----LDGTQLNGQLLHAKTLTLEQPTTGDELSFDSPLPDYFQFALSTL 300 >UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C n=59 Tax=Proteobacteria RepID=RLUC_VIBCH Length = 315 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 17/232 (7%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+Y+D+ L+ +NKPSG VH + ++ +R Q + + HR+DR TSG+LL+ Sbjct: 97 IVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQ-ARFLELVHRIDRDTSGILLV 155 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 A R L QF + +QK Y+A+V G W E V++ PL++ R + Sbjct: 156 AKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNS---IVRVNPNG 212 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 +P+ T +R L LV+ P TGR HQ+R H ++ HPI D ++G Sbjct: 213 KPSETRFRILEKF-----------AEATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYG 261 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D R + A FG++RL LHA+ + HP + + L IHA L+ QAL++ Sbjct: 262 DRRFDAYTA-QFGIERLFLHAANIQFVHPASEKKLEIHAPLEAHLEQALTKM 312 >UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4FN11_PELUB Length = 326 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 27/250 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ-----HVFTAHRLD 54 L+I+Y+D+ L+ +NKP+G ++H + DE +V +M +D + HR+D Sbjct: 82 LQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALMHYNKDSLSTIGDELRPGIVHRID 141 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 + TSG++++ ++E L+ QF +H I + Y ++ G L +D + K Sbjct: 142 KDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIWGKLRPSSGKIDTFITR-SSKNRQ 200 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + + A+T+Y+ + E T LVE +TGR HQ+R H+ H+ + Sbjct: 201 MMEVSNSKGKRAITNYKTIEIFEND------KTPTLSLVECRLETGRTHQIRVHMTHMGN 254 Query: 174 PIIGDSKHGDLRQNRSGAEH---------FGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 I+GD G ++ ++ + L R LHA L HP T E + + L Sbjct: 255 SIMGD---GKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLGFIHPRTNEEMVFTSILP 311 Query: 225 DTWMQALSQF 234 L Sbjct: 312 QELENILVLL 321 >UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3Y9_9BACT Length = 345 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 24/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-DQIGQ-----HVFTAHRLDR 55 +++Y+D+ ++ VNKP+G +VH D +V R +IG+ HRLD Sbjct: 116 FDVVYEDDDVIVVNKPAGVVVHPGAGRPDGTLVNGLMFRYPEIGRIGDSVRPGIVHRLDV 175 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG++++ S A R L + F+ H++ K Y + G L E +D P+ + Sbjct: 176 GTSGLMVVARSDAAFRGLTEAFQAHEVLKEYLGLGVGALKAPEGTVDAPIGRDPRNRLKM 235 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 D + AVT Y+ L T R L+ + TGR HQ+R H+ L Sbjct: 236 CVSWD--GRDAVTDYKVLWT-----------RARCNLIRVRLHTGRTHQIRVHMRALGCS 282 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 + GD+ +G + A+H R+ LH+ +L HP +GE L A L + AL Sbjct: 283 LDGDTLYGP----KDPAQHILKDRVFLHSWRLGFRHPVSGERLEFRAPLPPELIAALR 336 >UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAZ3_DESAH Length = 313 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 116/248 (46%), Gaps = 27/248 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQHV------FTAHRL 53 L+ L++D+W+V VNKP+G +VH + ++ ++ H HRL Sbjct: 81 LDFLHEDQWIVVVNKPAGMVVHPGAGNSSGTLLNALLHHFPSLTDTHCDPPLRGGIVHRL 140 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIA 112 D+ TSG +++ S +A L ++F +++KRY A+ G + E + + P+ Sbjct: 141 DKDTSGTIVVAKSKKAYEFLQKEFRFRRVEKRYIALATGIITETQGRITLPIGRHPIH-R 199 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + A + +PA T +R L + + L+++ KTGR HQ+R H L Sbjct: 200 KRMAVNTERARPAETLWRVLGQM-----------AGHTLLDVGLKTGRTHQIRVHFRALG 248 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 HP+ GD +G G + R MLHA L HP++G+ + A L + ++ L Sbjct: 249 HPLAGDRVYG-----FRGKQSARAPRQMLHAGTLGFRHPWSGKRVEFTAPLPEDMVEVLE 303 Query: 233 QFGWRGLL 240 + RG L Sbjct: 304 RLN-RGPL 310 >UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium RepID=D0J9U5_BLASP Length = 344 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 29/250 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV---MQTVRDQIGQHVFTAHRLDRPTS 58 L ILY+DE ++ +NK +G +VH + + ++ + + HR+D+ T+ Sbjct: 87 LNILYEDEDILVINKAAGMVVHPGFGNEKGTLIHGIKYHFKNNHQLYRLGLVHRIDKDTT 146 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK--F 115 G+L++ + A + L QQF IQ++Y A+V G + +E + + + + F Sbjct: 147 GLLVLAKNEYAQKYLFQQFISKTIQRKYLALVWGNIQKQEGTISGFIGRDPNNRKRMTLF 206 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 R + +VTHY+ L + V +TG+ HQ+R H +L HP+ Sbjct: 207 QRNFYRSRYSVTHYKVLERFKY-----------LTYVSCNLETGKTHQIRVHFKYLGHPL 255 Query: 176 IGDSKHGDLR-----------QNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 DS +G + + L+R LHA LS HP + Sbjct: 256 FNDSTYGGDKIFMKKYLSKKSIDFFKDSLNLLKRQALHAGSLSFIHP-KNRKCHFTCSIP 314 Query: 225 DTWMQALSQF 234 + + + L + Sbjct: 315 EDFKKVLQKL 324 >UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C n=5 Tax=Buchnera aphidicola RepID=RLUC_BUCBP Length = 315 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 13/232 (5%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D + + +NKPSG VH + ++ +R +++ HRLDR TSGVL++ Sbjct: 95 ILYEDNYFLILNKPSGMSVHSGSGINYGMIENLRILRPY-NRYLDLVHRLDRDTSGVLII 153 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 R L +Q + +I+K+Y A+V G W + PL++ + + D Sbjct: 154 AKKRSILRNLHEQLREKKIKKKYVALVHGVWPDILKSISKPLLKTSSRKNKNIVKIDPKG 213 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + ++TH+ T+ L+ + P TGR HQ+R HL HL +PI+ D+K+G Sbjct: 214 KESITHFNIKKKY-----------TKNTLISITPITGRTHQIRVHLLHLNYPIVLDAKYG 262 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + + F + RL+LHA ++ HP + + I A LD + L Sbjct: 263 IKKLDYFIKNKFNINRLLLHAESINFFHPKRKKNILITAPLDYVFKTVLKNL 314 >UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM1_DESBD Length = 526 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 21/238 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV-----MQTVRDQIGQHVFTAHRLDRP 56 L + + DE LV VNK VH + + +V + Q G+ HRLD+ Sbjct: 82 LNVFFADEDLVVVNKTPAMTVHPAPSVAEPTLVHRVAHHFPALLSQSGERPGIVHRLDKD 141 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 TSG++++ LS A L Q F ++ K Y A+V G + L I + A Sbjct: 142 TSGLIVLALSESARLSLTQAFASREVYKEYLALVAGVPDSSGTVSLALGRHP-SIKTRMA 200 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 ++G + A T + L + A LV + TGR HQ+R H+A L HP++ Sbjct: 201 VVERGGRAAETRFELLWSAADRSA---------SLVRVRIMTGRTHQIRVHMAALGHPLL 251 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD+ + D + R MLHA QL HP + E + A D ++Q L + Sbjct: 252 GDAVYADKQTAARA------PRQMLHAWQLRFEHPRSFESMEFCAPPPDDFLQVLREL 303 >UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=C6J6E3_9BACL Length = 321 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 25/241 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 +I+Y+DE L+ VNK +G +VH + + VV HRLD+ TS Sbjct: 85 FDIVYEDEALLIVNKAAGLIVHPTHGHYTGTLANGVVYYWQEKGEKFRFRPVHRLDQETS 144 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAR 117 G++ + ++ + +++Q ++ K+Y A+V G E +D P+ + + + Sbjct: 145 GLIAIAKNAYVHQHISEQLIAGEVTKKYTALVHGCPAVPEGTIDGPIDRDPAEPHRRIVT 204 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 P++T+Y+ VEL TGR HQ+R H+ + HP+IG Sbjct: 205 PS--GYPSLTYYKVAEAY-----------GDGARVELRLGTGRTHQIRVHMTSIGHPLIG 251 Query: 178 DSKHG--------DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 D +G + R + R LHAS+L HP TGE LT + L + ++ Sbjct: 252 DKFYGMPGLAELPAPARERIARLDAAIGRQALHASELGFRHPLTGEALTFKSELPEDMLK 311 Query: 230 A 230 Sbjct: 312 L 312 >UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTN1_9PROT Length = 346 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 101/241 (41%), Gaps = 22/241 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV---FTAHRLDRPTS 58 L+I+Y+D+ ++ +NKP +VH + + ++ ++ + + HRLD+ T+ Sbjct: 84 LDIVYEDDDILVLNKPYNLVVHPGSGNANGTLLNGLLYYNKDLEKLPRGGIVHRLDKDTT 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + E+ L Q + + + Y AIV G + + V+ P+ + K A Sbjct: 144 GLMVVAKNEESQNNLISQLQSKSVYREYRAIVWGQIWQNKVIQKPIGRHP-RQRTKMAVT 202 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + A T L + V KTGR HQ+R H+ PI+GD Sbjct: 203 KVNGKDAETKLEILERFNY-----------HTYVRCLLKTGRTHQIRVHMLDNNSPIVGD 251 Query: 179 SKHGDLRQNRSGAEHFGL-------QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +G + + L R LHA L L HP T + + L + + L Sbjct: 252 KDYGLKKIIPTKNMEMDLLKSIKNFDRQALHAIALGLIHPKTNKEMKWTIDLPEDMKELL 311 Query: 232 S 232 S Sbjct: 312 S 312 >UniRef50_B0RLZ1 Pseudouridine synthase n=13 Tax=Xanthomonadaceae RepID=B0RLZ1_XANCB Length = 258 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 95/236 (40%), Positives = 137/236 (58%), Gaps = 11/236 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L+ILYQD L V+KP+G +VH S L R E + +R Q+G+ +F HRLDR TSG L Sbjct: 20 LQILYQDAVLAVVDKPAGLMVHDSKLARGEDDFLADRLRVQLGRPIFLVHRLDRATSGCL 79 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADKFAREDK 120 L+ + L + +++K Y AI RGW EE ++D+ L K Sbjct: 80 LLAFDRDTASALGKALMAGEVEKDYLAICRGWPAEERFIVDHDLDGGPGKPIK------- 132 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 +PAVTH++ LAT E+ + + + T+RY L+ +P+TGR Q+RRHL HL H +IGD+ Sbjct: 133 --KPAVTHFQRLATGELEIPSTGFATSRYALLRCQPQTGRFRQIRRHLKHLSHHMIGDTS 190 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 HGD R NRS G+ R++LHA +L HP G +++ A LD + +A + FGW Sbjct: 191 HGDGRHNRSFR-MLGIHRMLLHAERLGFPHPADGRRISVVAPLDVEFAKACALFGW 245 >UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNC0_HIRBI Length = 369 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 38/262 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG-----QHVFTAHRLD 54 L++L++DE L+ +NKP+G +VH + +V ++ Q+ HRLD Sbjct: 98 LDVLFEDEHLIILNKPAGLVVHPAPGSTSGTLVNALLHHCAGQLPGIGGVARPGIVHRLD 157 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 + TSGV++ + A L+ F+ H +++ Y A+ RG ++ + Sbjct: 158 KDTSGVMVAAKTEFAHTGLSSLFQAHFMERAYLAVTRGAPRPLLGKIETRIARSTTDRKK 217 Query: 114 KFARE------------------DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELE 155 ++ + A+T+Y+ L AT P L E Sbjct: 218 MAVVRESRLSASAEWHGESEEDYEQKGKHAITNYKVLEQFGRIDATSGLPA--ATLTECR 275 Query: 156 PKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFG----------LQRLMLHASQ 205 +TGR HQ+R H+AH+ P++GD +G R ++ +R LHA+ Sbjct: 276 LETGRTHQIRVHMAHIGAPLLGDQTYGRYRGLKAHGSGPAFETATHACKEFKRQALHAAI 335 Query: 206 LSLTHPFTGEPLTIHAGLDDTW 227 L HP TGE L + Sbjct: 336 LGFEHPVTGENLRFEVEPPEDM 357 >UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXZ8_DESOH Length = 329 Score = 256 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 27/245 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 L +L++D +L+ VNKP G +VH + +V HRLDR Sbjct: 82 LPLLFEDAFLLVVNKPPGLVVHPAPGHEGGTLVNRLLHHFPAIGTVGEPDRPGIVHRLDR 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG L++ ++ A + L+ F+ Q++K Y A+V G + V+ P+ + K Sbjct: 142 NTSGALVVAKTAAAHQALSDMFKSRQVRKTYLALVYGQMKSTGGVVTLPIGRHSLE-RKK 200 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + +PA T ++ R L+ELE TGR HQ+R H L+ P Sbjct: 201 MSVSSPQARPAETRWKV-----------RKAFVDASLLELEIHTGRTHQIRVHCTALQRP 249 Query: 175 IIGDSKH----GDLRQNRSGAEHFGL----QRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 ++GD + RQ+ S F L R MLHA +L HP TG P+ A L + Sbjct: 250 VVGDPTYPCKWTRKRQHFSSRASFELLNAAGRQMLHAWRLEFDHPVTGAPMCFTAPLFED 309 Query: 227 WMQAL 231 + L Sbjct: 310 IKEML 314 >UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4S9_9DELT Length = 596 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 72/273 (26%), Positives = 112/273 (41%), Gaps = 32/273 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR---------DQIGQHVFTAHR 52 LE++++D + ++K +G H + + +V R Q HR Sbjct: 99 LEVVFEDAHVAVIDKRAGLTTHPAPGEPGPTLVNHLLHRWPDVASDISGMDRQRPGIVHR 158 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKI 111 LD+ TSG++++ L+ LA F +++K Y A+V G + +D P+ + Sbjct: 159 LDKDTSGLMVVALTEGDRLRLAADFAGRRVRKVYLAVVLGRPAQPAGTIDAPMGRHPSQ- 217 Query: 112 ADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 + A +G + AV+ YR L T P LV + TGR HQ+R H+AH+ Sbjct: 218 KTRMAVVARGGREAVSDYRVLWT---------GPRGLASLVAVRIHTGRTHQIRVHMAHI 268 Query: 172 RHPIIGDSKHGDLR----QNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 HP++GDS +G R R MLHA LS HP T E +T+ + Sbjct: 269 GHPLLGDSAYGPRENVEWSRRPDRLAGLAPRQMLHAFHLSFRHPATCERVTLWRRPPADF 328 Query: 228 MQALSQFGWRGLLPENERVEFSAPSGQDGEISS 260 L+ R L G G S Sbjct: 329 CTLLAALP-RECL-------RVGIVGMPGSGKS 353 >UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42CC7 Length = 322 Score = 256 bits (655), Expect = 5e-67, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 25/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L+I Y+D+ L+ +NKP G S + V+ I +RLDR TS Sbjct: 105 LDIHYEDDHLLVINKPQGMPTIPSREHPSRTLANAVMGYYESHHIPFTFHAVNRLDRDTS 164 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G+L++ A L++ ++++ Y A+ G++ E + P+ I ++ Sbjct: 165 GLLVVAKHGLAHDQLSKGQRAGKLKRYYLALAEGFVQPREGTIHAPIKRRPSSIIERMVA 224 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q A+THY+ + Y VE+ +TGR HQ+R H AHL HP++G Sbjct: 225 AD--GQEAITHYKVI-----------NDNQAYSEVEINLETGRTHQIRVHFAHLGHPLLG 271 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D +G + L R LH ++ L HPFTG+ L A L ++ + Sbjct: 272 DDLYGGSIE--------LLARQALHCQRVELIHPFTGKHLHFSAPLPKDLIEVKDKL 320 >UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQQ9_9BACE Length = 300 Score = 256 bits (655), Expect = 6e-67, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 111/236 (47%), Gaps = 24/236 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV--VVMQTVRDQ-IGQHVFTAHRLDRPTS 58 L+I+YQD+ ++ +NK G VH + + +M R Q I HRLDR TS Sbjct: 84 LDIVYQDQDVLVLNKAPGVAVHPGPGHYSDTIGNFLMDYYRKQGILADFHPVHRLDRGTS 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G+LL+ L A +L +Q ++ Y A+ G V+D P+ + + R Sbjct: 144 GLLLVALHGHAQEVLKEQLHSPSFRRVYLAVCEGAPNPPSGVIDAPIGRLEGSVLARTVR 203 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q AVTHYR L TV LV LE +TGR HQ+R H+AHL HP+ G Sbjct: 204 PD--GQRAVTHYRTLRTV-----------NDRALVRLELETGRTHQIRVHMAHLGHPLTG 250 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 D +G + + R LHA++LS THP TG+ + A L + + Sbjct: 251 DFLYGT-------EDQSLIPRPALHAAELSFTHPITGKTMAFTAPLPQDMAALVPE 299 >UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW59_ALIAD Length = 314 Score = 256 bits (655), Expect = 6e-67, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 98/238 (41%), Gaps = 28/238 (11%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDRPT 57 + Y+D+ ++ V+KP G +VH +V R HR+D+ T Sbjct: 91 VAYEDDDVIVVDKPRGVVVHPGAGHMRGTLVNGLLARGTPLCTLAGALRPGVVHRIDKDT 150 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFA 116 SG+++ S A R L + F H +++ Y AI G + E +D P+ + Sbjct: 151 SGLVVFAKSDRAYRALVEAFRAHDVEREYVAIAHGRMPHREGTIDMPIARDPADRQRMAV 210 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 R +G + AVTH+ L + +Y + L +TGR HQ+R HLA + HPI Sbjct: 211 R--QGGKRAVTHFEVLESF-----------AKYSYLRLRLETGRTHQIRVHLAAIGHPIA 257 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD +G + LHA L THP G L + + + L Sbjct: 258 GDPVYGPRH-------TLPIDGQALHARTLGFTHP-DGRRLRFESAVPSDMARLLDGL 307 >UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GP31_9BURK Length = 335 Score = 256 bits (654), Expect = 7e-67, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 113/236 (47%), Gaps = 9/236 (3%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L IL++DE L+ VNKPSG VH + ++ +R + Q + HR+DR TSG+L Sbjct: 104 LPILFEDEHLLVVNKPSGMAVHGGSGSSFGLIECIRALRAETHQDLELVHRIDRETSGIL 163 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDK 120 ++ A R L +Q +K Y +V G W +D PL++ + D+ Sbjct: 164 IISKKRSALRKLQEQLRARSWKKYYKTLVLGHWPEALRQVDLPLLKTQSSEKEARVFVDE 223 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 A T ++ + + ++ + L++ + TGR HQ+R H + + PI GD + Sbjct: 224 SGDKACTKFKVIQCYKSSYSS-------FTLIQAQILTGRTHQIRVHTSANKFPIAGDDR 276 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 +G+ N+ A GL+R+ LHA++L L HP T E + + A L L Sbjct: 277 YGNFEMNKQLARQ-GLKRMFLHAARLQLVHPATNETIVLEAPLAPELDGFLKSLQA 331 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 255 bits (653), Expect = 9e-67, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 27/241 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTV------RDQIGQ-HVFTAHRLD 54 L+I+Y+D+ ++ VNKP G +VH S ++ +V + D G+ HR+D Sbjct: 83 LDIVYEDDAILVVNKPKGLIVHPSPSTLNQPTLVHGLLAHTTQLSDLNGELRPGIVHRID 142 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 + T+G+L++ ++EA +L + +Q I + Y AIV + A +D P+ + K Sbjct: 143 KDTTGLLVVAKTNEAHEILVEDLKQRLISREYVAIVHHQFKHQSATVDAPIGRDP-KNRQ 201 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + A D+ + AVTH+ + ++ + TGR HQ+R H +++H Sbjct: 202 RMAVTDQNSKQAVTHFYLAERF-----------NDFSVLRCKLDTGRTHQIRVHAQYIKH 250 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GD + S + LHA +L+LTHP + E +T A L T + + Sbjct: 251 PIVGDQTY-------SYKNTWETNGQCLHAQKLTLTHPVSKEVMTFEAELPQTMKDVIEE 303 Query: 234 F 234 Sbjct: 304 I 304 >UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacterium RepID=A3RGY8_9BACT Length = 353 Score = 255 bits (653), Expect = 9e-67, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 14/241 (5%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 LE++++D+ ++ +NKP +VH + ++ HRLD TS Sbjct: 110 LEVIFEDDAILVLNKPPKLVVHPAAGHWSGTLLNGLLAYAPTLIDVPRAGIVHRLDADTS 169 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + A L +Q + + + Y A+V G + V+D + + Sbjct: 170 GLMVVAKTLAAQTDLVRQLQSRTVTREYWALVLGVPSQRGVIDAAIGRDPRNPLRFKVST 229 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + +PA THY L + + + +TGR HQ+R HL H+ HP+IGD Sbjct: 230 TEAAKPARTHYATLDS-------TKNAGADISWLACRLETGRTHQIRVHLEHVGHPLIGD 282 Query: 179 SKHGDLRQNR--SGAEHFGLQRLMLHASQLSLTHPFTGEPLT-IHAGLDDTWMQALSQFG 235 + R A R LHA +L+L HP + + L H+ Q + + G Sbjct: 283 PVYRRRLPPRGEPAARWKEFDRQALHACRLALDHPVSRQRLNWFHSP-AADLAQLMHELG 341 Query: 236 W 236 + Sbjct: 342 F 342 >UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytoplasma RepID=Q2NIN6_AYWBP Length = 306 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 25/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV-----MQTVRDQIGQHVFTAHRLDRP 56 L+I+Y+D +L +NKP+ +VH S + +V T+ Q HRLD+ Sbjct: 82 LDIIYEDPYLAVINKPANLVVHPSLSFQKTTLVNGLLHQFNTLSHIDTQRPGIVHRLDKN 141 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 T+G+L++ +++ L F+Q +I K Y A++ G+L ++ ++ P+ Sbjct: 142 TTGLLIVAKTNDVSDKLQIAFQQRKITKIYWALIEGFLEDKGIIKLPIGRNNHNRLKMQV 201 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 D + AVTH++ L + + L+E +TGR HQLR H + L+HPI+ Sbjct: 202 MPD--GKTAVTHFKTLQRF-----------SHFSLMECNLETGRTHQLRAHFSFLKHPIV 248 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD + + H LH+ L HP T + L + A L + + L F Sbjct: 249 GDLLY-------DSSHHITPLGQFLHSKILKFNHPITNQNLILEAPLPTNFEKLLKTF 299 >UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZUU7_9FIRM Length = 293 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 23/233 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 + +LY+DE ++ VNKP+ VH S + + V +RLDR TS Sbjct: 81 IPVLYEDEDILVVNKPADMPVHPSLGNYTNTLANGVAAYLETKGESCPFRCINRLDRDTS 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G L++ ++ + +L+ Q QI + Y A+V G + + P+ D + ++ Sbjct: 141 GALILAKNALSAAILSVQMRNRQISRTYLAVVEGIPRQSGTISAPISRAADSVIERRIDF 200 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + G + A+THY+ L + L+E+ +TGR HQ+R H+ ++ HP+ D Sbjct: 201 ENG-ESAITHYQLLEV-----------KNNHSLLEIHLETGRTHQIRVHMGYIGHPLPAD 248 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + + +R LH+ QL HP TG P+ + A + + A Sbjct: 249 YLYNPVYDT--------FKRQPLHSLQLKFCHPITGTPMCLMAPVPEDMSNAF 293 >UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=C4XFS9_MYCFE Length = 315 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 26/234 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ-----HVFTAHRLD 54 L+I Y+D+ LV +NKPS +VH S ++ +V ++ ++ + HR+D Sbjct: 84 LDIKYEDDDLVIINKPSNLVVHPSPGHYNDTLVNGLLYHFKNNLSNENGLLRPGIVHRID 143 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIAD 113 + TSG+L++ +++ L ++H+I++ Y AIVRG + ++ P+ + + Sbjct: 144 KDTSGLLIIAKNNKMHNSLTDMLKRHEIERSYLAIVRGLIENPLTKINLPIAR--NTVDR 201 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K K + A+T L + LV E KTGR HQ+R HL++++H Sbjct: 202 KMMSVHKEGKEAITFVHLLKHFYLDKEPM-------SLVRCELKTGRTHQIRVHLSYIKH 254 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 P+ GD +G + LHA +L HP T + + ++A + + Sbjct: 255 PVYGDPTYGKSVDEFN---------QRLHAYKLKFIHPLTKKEICVYAPVPKEF 299 >UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWB7_HALOH Length = 310 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 24/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQH-VFTAHRLDRPTS 58 L+I+Y+D L+ +NKP+ LVH + +++ +V V+ +R+Q + V HRLDR T+ Sbjct: 93 LDIIYEDRHLLVINKPANMLVHPTPVEKSNTIVNGVLYHMRNQGNYNLVRPIHRLDRNTT 152 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAR 117 G+LL+ + A + QF+ + I + Y A V G + ++ ++ P+ + D + + Sbjct: 153 GLLLIAKNQYAHNYITHQFQNNNIHREYLAFVHGNVEFKKESINAPIGKTRDSLIKRKVD 212 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 G + AVTH + + P L+ ++ +TGR HQ+R HL+HL HP++G Sbjct: 213 HTLG-KRAVTHIKVVK-----------PGGLISLIRVKLETGRTHQIRVHLSHLGHPLLG 260 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D+ +G E ++R LH+ +++ PF + +T A L + Q Sbjct: 261 DTLYGG--------EDILIKRPALHSYKVTCCLPFKHKEVTFKAPLPVDMEKLKKQL 309 >UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QV86_BRAHW Length = 329 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 28/237 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ------IGQHVFTAHRLDR 55 L+ILY+D++L+ +NKP+G VH S + +V + + + HRLD+ Sbjct: 109 LDILYEDKYLLVINKPAGMSVHCSPSEMSGTLVNALLYKIKDFDFVGNKERAGIIHRLDK 168 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIADK 114 TSG++++G ++ + +QF+ I+K YHAIV G L + + ++ P+ Sbjct: 169 DTSGLMIIGKNANIVSSIQEQFKNRTIKKIYHAIVVGVLKDNYIEINLPIGRHHVYRKKM 228 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 RED + A+TH + L + L+E+ KTGR HQ+R H ++ P Sbjct: 229 TVRED--GKEALTHIKVLKRF-----------NSHTLIEINLKTGRTHQIRVHSSYKGFP 275 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + GD + SG LML A ++ HP T E L D + L Sbjct: 276 VAGDKIYSKSFSKYSG--------LMLVAKKIEFMHPITKELLDFEIDYPDYFTNFL 324 >UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organisms RepID=Q3JQ55_BURP1 Length = 477 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 119/240 (49%), Gaps = 19/240 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 EIL++D+ ++ +NKP+G VH + M+ R + + AHRLDR TSG+L Sbjct: 243 FEILFEDDAIIVLNKPAGVAVHGGSGVAFGVIEQMRHARPH-AKFLELAHRLDRETSGIL 301 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE----AVLDYPLVEELDKIADKFAR 117 ++ A L +Q ++++ KRY A V G + V+ PL + ++ R Sbjct: 302 MLAKKRSALVGLHEQIRENRMDKRYFACVHGDWAADWGRRRVVKAPLFKYATPDGERRVR 361 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + P+ T + + Y LVE E KTGR HQ+R HLAHL PI+G Sbjct: 362 VQEDGLPSHTVFNLVDRW-----------PDYALVEAELKTGRTHQIRVHLAHLGLPIVG 410 Query: 178 DSKHGDLRQNRSGAEH---FGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D+K+GD N++ A ++R+ LHA +L L HP TGEPL A L Q + Q Sbjct: 411 DAKYGDFALNKALARANAVPSIKRMFLHAHRLRLAHPLTGEPLQFDAPLPAECRQFIDQL 470 >UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=A5IBH6_LEGPC Length = 321 Score = 254 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 22/245 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR---DQIGQHVFTAHRLDRPTS 58 ++I+Y+D ++ VNKP+G +VH +++ +V Q+ HRLD+ T+ Sbjct: 87 IQIIYEDSEVIVVNKPAGLVVHPGAGNKEHTLVNALLHHCPELQLLPRAGIIHRLDKDTT 146 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+L++ + + L +Q + +I++ Y +V G+++ +D K K A Sbjct: 147 GLLIVAKNLISHTSLIRQMQNREIKRHYLTLVHGYVISGGTIDTGFGRHP-KNRLKMAVT 205 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D G Q AVTHY + + L+ + TGR HQ+R H+ ++ HP++GD Sbjct: 206 DFGRQ-AVTHYNINKHYK-----------DFTLLNVSLMTGRTHQIRVHMNYINHPVVGD 253 Query: 179 SKHGDLRQNRSGAEHFGL------QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G + A+ L +R LHA +S HP +T++A L D + L+ Sbjct: 254 QLYGGRMKFPPNADEAILSVLKQFKRQALHACSISFCHPVKNTEITLNALLPDDFELLLN 313 Query: 233 QFGWR 237 Sbjct: 314 TLDQH 318 >UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus RepID=C6CWL6_PAESJ Length = 316 Score = 254 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 18/242 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-GQHVF--TAHRLDRPTS 58 L I+++D++L+ VNKP+G +VH + + Q+ G+ V HRLD TS Sbjct: 89 LSIVFEDDYLLVVNKPAGIIVHPTKGHYTNTLANGIVHHWQVRGERVRFRPVHRLDEDTS 148 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G++++ + + L++Q + I K Y A V G + + P+ + + Sbjct: 149 GLVVIAKNPYIHQQLSEQLQAGTIMKIYCAYVYGTPSPADGTVGAPIDRNPEDPHVRIVT 208 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + P+VTHY+ A + + V L+ +TGR HQ+R H+ H+ P+IG Sbjct: 209 PE--GYPSVTHYKTAAV---------FGGGQASKVRLKLETGRTHQIRVHMKHIGCPLIG 257 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 D +G L+ + R LHA L LTHP T E A L +Q + R Sbjct: 258 DGMYG-LQTGKVDEWETAAGRQALHAETLGLTHPMTKEWSEWTAALPPDLVQL--ELALR 314 Query: 238 GL 239 Sbjct: 315 EC 316 >UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7T3_9PLAN Length = 355 Score = 254 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 105/247 (42%), Gaps = 25/247 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 L+IL++DE L+AVNKP G +VH + + Q HRLDR Sbjct: 115 LDILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSALAFHFQQLSTVGGQHRPGIVHRLDR 174 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADK 114 TSGV+++ + LA QF K Y AI G + V+ P+ Sbjct: 175 DTSGVIIVAKTDPVHFSLAAQFADRTTAKEYFAITAGVPDRDRDVVSQPIGIHPFHREKM 234 Query: 115 FAREDK-GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 R + A T + L ++ VE PKTGR HQ+R HLAH+R Sbjct: 235 AIRPGHSTSRDAETMFHVLERF-----------AQHAAVECLPKTGRTHQIRVHLAHVRT 283 Query: 174 PIIGDSKHGDLRQN------RSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 P++ D +G + R G+ L R LHA +LS+ HP TGE LTI A L Sbjct: 284 PVLCDKLYGGRAEITQGELVRDGSTEVVLNRQALHARKLSINHPKTGERLTIEAPLPADL 343 Query: 228 MQALSQF 234 + L Sbjct: 344 QRVLDLL 350 >UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae RepID=A7H6D3_ANADF Length = 339 Score = 254 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 126/260 (48%), Gaps = 23/260 (8%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-------DQIGQHVFTAHRLDRP 56 +L++D ++AV+KP+G H +V M AHRLDR Sbjct: 87 VLHEDADVLAVDKPAGLAAHPGTGISGATLVEMARAHLGTPADLPPTEFKPSPAHRLDRD 146 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQH-QIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSGV+L+ + + L + F ++K Y A+V+G + E +D PL E K Sbjct: 147 TSGVVLVAKNRKTMVRLTELFTDGADVKKTYLALVKGKMPREAGTIDLPLAEHEQTARSK 206 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 AR Q A+T ++ ++ ++ L+ + +TGR HQ+RRHL + HP Sbjct: 207 AAR-GVNLQEALTRWKVVSAMK-----------EASLLAVTIETGRTHQIRRHLEAVGHP 254 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD ++GD NR+ + +GL+R+ LHA +L L HP TG PL + A L ++ALS+ Sbjct: 255 VLGDRRYGDFPTNRAARQRWGLRRMFLHAWRLELPHPTTGAPLRLEAPLPGELLEALSRA 314 Query: 235 GWRGLLPENERVEFSAPSGQ 254 P +AP G Sbjct: 315 NLSS--PAGTASGRAAPRGA 332 >UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UHX8_RHOBA Length = 334 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 71/257 (27%), Positives = 106/257 (41%), Gaps = 39/257 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 L+ILY+D+ LV +NKP+G +VH + + + R Q HRLDR Sbjct: 79 LDILYEDDGLVVINKPAGMVVHPARGNWTGTLTSALAFRFQSLSDVGGPTRPGIVHRLDR 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIADK 114 TSGV+++ ++ LA Q+ +QK Y AI G L + + + + + Sbjct: 139 DTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAITFGRLDRDRDWIHASIGRHPYQRDKQ 198 Query: 115 FAREDK-GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 RE + A T Y + R V++ PKTGR HQ+R HLAH+ Sbjct: 199 AIREGHATSKTASTFYEVVER-----------HGRVTRVDVRPKTGRTHQIRVHLAHIGC 247 Query: 174 PIIGDSKHGDLRQNRSGA--------------------EHFGLQRLMLHASQLSLTHPFT 213 PI+ D +G + E L R LHA L+ T+P T Sbjct: 248 PILCDRLYGGHSELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQALHAKALTFTNPQT 307 Query: 214 GEPLTIHAGLDDTWMQA 230 G+ +T+ A L Sbjct: 308 GKEMTLTAPLPPDLQAV 324 >UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNZ6_9DELT Length = 535 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 22/241 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 L+I+Y D +V +NKP+G VH S D +V Q HRLD+ Sbjct: 83 LDIVYMDREMVVLNKPAGLSVHPSSSDPAPTLVHYLLYACPGLRLMTDRQRPGIVHRLDK 142 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 T+G+++ L+ EA LA QF ++ K Y A+V G L +E +++ PL + A Sbjct: 143 DTTGLMVAALNQEAKEDLAGQFAGRRVHKTYLALVCGALKQDEGIINVPLARDQQSRAR- 201 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + A T Y+ L R P+ + LV+++ TGR HQ+R H +HL HP Sbjct: 202 -VAPSREGRSARTAYKVLK---------RDPSGLWSLVQVQIFTGRTHQIRVHFSHLNHP 251 Query: 175 IIGDSKHGDLRQNRSGAEHFGL----QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQA 230 ++GD +G +R G + L +R +LH+S L + HP + + L + +++ Sbjct: 252 VLGDRIYGGTDWDRFGWKKRFLSRLAKRQLLHSSCLGIMHPVSRQWLEFISRPPRDFIRT 311 Query: 231 L 231 L Sbjct: 312 L 312 >UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacteria RepID=A4WSV2_RHOS5 Length = 349 Score = 254 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 105/257 (40%), Gaps = 40/257 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L ++++D L+ ++KP G +VH + +V + HR+D Sbjct: 90 LSVVWEDADLIVIDKPVGMVVHPAPGQWTGTLVNALLHHCGASLSGIGGEKRPGIVHRID 149 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA---------------- 98 + TSG+L++ + A + LA QFE H +++RY A+V G Sbjct: 150 KDTSGLLVVAKTDRAHQGLAAQFEAHTVERRYLALVHGVPEPSDPRLRGIRGVSFEPGGV 209 Query: 99 -VLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPK 157 + + + + G + AVT R L P A LVE + Sbjct: 210 LRIATGIARHRTDRQRQAVTFE-GGRHAVTRARLLERFGTPPA--------AALVECRLE 260 Query: 158 TGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGA-------EHFGLQRLMLHASQLSLTH 210 TGR HQ+R H++H+ H +IGD +G R+ + A R LHA+ L H Sbjct: 261 TGRTHQIRVHMSHVGHGLIGDQTYGGRRKLSAKAVGAEAAQAAEAFPRQALHAATLGFCH 320 Query: 211 PFTGEPLTIHAGLDDTW 227 P TGE L+ + L Sbjct: 321 PVTGEDLSFESPLPADM 337 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 107/261 (40%), Gaps = 33/261 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-------DQIGQHVFTAHRLD 54 L+I+Y+D+ L+ +NKP+G +VH + +V D + + HR+D Sbjct: 110 LDIVYEDDVLLVINKPAGLVVHPGHGNYTGTLVNALAYYLREDPEYDPMDPSLGLVHRID 169 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 + TSG+L++ +EA L +QF + Y A+V G + + +L Sbjct: 170 KDTSGLLVVAKRAEAKSDLCKQFYYKTTHRSYRALVWGRFDYPIGTITGNIGRDLKDRLQ 229 Query: 114 KFAREDKG--PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 G +PAVTHY+ L + +E +TGR HQ+R H+ H+ Sbjct: 230 MAVFPPDGDIGKPAVTHYQVLEELAYV-----------SWIECRLETGRTHQIRAHMKHI 278 Query: 172 RHPIIGDSKHGD---LRQNRSGAEHFGL-------QRLMLHASQLSLTHPFTGEPLTIHA 221 H + D ++G LR N + + R LHA L HP TG + + Sbjct: 279 GHTLFADERYGGDQILRGNNTANYRRFVQNCLAICPRQALHAKTLGFRHPVTGVEMQFDS 338 Query: 222 GLDDTWMQALSQFGWRGLLPE 242 + L + WR + Sbjct: 339 DIPADLTTLLER--WRTFIAC 357 >UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MEC0_PARUW Length = 318 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 24/244 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L ILY+DE L+ +NKP+G +VH + + V Q HRLD+ Sbjct: 87 LSILYEDEHLLVINKPAGMVVHPAPGNWSGTFVNALLYYCQKLPLLPDTIRPGIVHRLDK 146 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG+L+ + E + L + F ++ K Y AI G + + P+ I K Sbjct: 147 GTSGLLVAAKTLETQQKLIELFASRKVYKAYLAICIGRPA-DGEIQAPIGRHP--IHRKQ 203 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 +PA++ + L + + V++E TGR HQ+R H+ + PI Sbjct: 204 MAVIPTGKPAISFCKTLGW-----------SDKLSFVQIEIATGRTHQIRVHMKYRGSPI 252 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD +G + N +++ + +LHA+ L HP + E L ++ + + Sbjct: 253 LGDPLYGQISLN----QYYSVPHQLLHAAVLRFQHPISLENLEFCTPPPPEMVRLIKKID 308 Query: 236 WRGL 239 + Sbjct: 309 PKSP 312 >UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6Q2_MYCCR Length = 306 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 26/235 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQT------VRDQIGQ-HVFTAHRLD 54 EI+YQD ++ +NKP +VH + D+ +V + D G+ HRLD Sbjct: 82 FEIVYQDNDIIVINKPKNLVVHPGNGNWDKTLVNGLLHEFATNLSDVNGEIRPGIVHRLD 141 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIAD 113 + TSG+LL+ +++A + LA+Q E H+I+++Y AIV G + + ++ P+ + Sbjct: 142 KDTSGLLLVAKNNQAHKYLAKQLENHEIERKYIAIVVGKIPHTKMRINLPIGRDNQNRTK 201 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K + A+T+ + T Y + +V+ +TGR HQ+R HL+H+ + Sbjct: 202 K-VVSSFNSKNAITNVELINTF-------VYKNEHFSIVKCILETGRTHQIRVHLSHIGY 253 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 PI GD +G + LHA +++ H G + + D + Sbjct: 254 PIYGDPVYGKKIDDL---------GQRLHAYEITFKH-LDGRLMNFKTEMPDEFK 298 >UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C n=102 Tax=Gammaproteobacteria RepID=RLUC_YERPE Length = 320 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 113/232 (48%), Gaps = 14/232 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 IL++D++L+ +NKPSG VH + ++ +R + + + HRLDR TSGVLL+ Sbjct: 95 ILFEDDYLLVLNKPSGTAVHGGSGLSFGVIEGLRALRPE-ARFLELVHRLDRDTSGVLLV 153 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGP 122 A R L +Q +QK Y A+VRG W + PL++ + + ++ + Sbjct: 154 AKKRSALRSLHEQLRLKSMQKDYLALVRGQWQSHCKAIQAPLLKNIMQSGERVVKVSSEG 213 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 +P+ T ++ E LV+ P TGR HQ+R H H HPI D ++G Sbjct: 214 KPSETRFKIEERFE-----------HATLVKASPVTGRTHQIRVHALHAGHPIAFDDRYG 262 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 R+ + GL RL LHA+ L HP TGE + I A LD+ L Sbjct: 263 -YREFDQQLQGTGLHRLFLHAAALRFEHPNTGETMRIEAPLDNQLRHCLLAL 313 >UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Faecalibacterium prausnitzii RepID=C7H7W3_9FIRM Length = 314 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 103/246 (41%), Gaps = 27/246 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L+I+Y+D L+ VNKP G +VH + + D +V + HR+D Sbjct: 80 LDIIYEDAHLLVVNKPKGMVVHPAPGNPDGTLVNALLWHCKGSLSGIGGEIRPGIVHRVD 139 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 + TSG+L++ L+QQ H +++ Y+ IV G + E ++ L Sbjct: 140 KDTSGLLVVAKDDATHIGLSQQMAVHSVERAYNTIVYGGFAQDEGFVESNLGRSKTDRKK 199 Query: 114 KFAREDKGP--QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 P + A T Y+ L + + ++E KTGR HQ+R H+A + Sbjct: 200 MAVYPASEPHTKYAYTGYKVLERL-----------GEFTMLECRLKTGRTHQIRVHMASI 248 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 HP+ GD +G L LHA L HP TGE L + L D + + L Sbjct: 249 HHPVAGDPVYGPHNC------ITSLHGQCLHAKTLGFIHPITGEHLRFDSELPDYFTRFL 302 Query: 232 SQFGWR 237 + R Sbjct: 303 TTLRQR 308 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 22/241 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 L+++Y+DE L+ V+K +G +VH + + +V R + HRLD+ Sbjct: 83 LDVVYEDEHLLVVDKAAGMVVHPAPGNWTGTLVNALLGRGEPLAEGGGEDRAGLVHRLDK 142 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADK 114 TSG+L++ S A R L+ Q+ +RY A+ G L EE ++ P+ + Sbjct: 143 DTSGLLVVAKSDAAHRTLSSALAARQVTRRYAAVCWGHLAEERITVEKPIARDPRDRTRM 202 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + + T + LA + L+ TGR HQ+R HLA HP Sbjct: 203 AIV--QSGKASRTDFTRLARFDSVD-----------LLRAHLHTGRTHQIRVHLASTGHP 249 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD + +R LHA+ L HP +G+ + + + L +L+ Sbjct: 250 VVGDDTY--GGGGGRRLALLPPRRHFLHAAWLRFRHPISGDLIDLRSPLPADLRTSLAAL 307 Query: 235 G 235 G Sbjct: 308 G 308 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 252 bits (646), Expect = 5e-66, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 117/254 (46%), Gaps = 29/254 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR----------DQIGQHVFTAH 51 L+++Y+D++L+AVNKP G + H + +V R + G H Sbjct: 77 LDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALLGRMPLPEQPDYDSEAGYRPGIVH 136 Query: 52 RLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA--VLDYPLVEELD 109 RLD+ TSGV+++ + A LA F+ + +K Y AI G + ++ P+ Sbjct: 137 RLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYLAIAAGQWRADGPARVEAPIGRHPV 196 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 + + P+ A T + LA P GR LV +P+TGR HQ+R HLA Sbjct: 197 Q-RQRMTVGGANPREAQTLFTPLAA--HPDGHGR----TLALVRAQPRTGRTHQIRVHLA 249 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 HL PI+GD+ +G + + R LHA LS+ HP TG L +HA D + Sbjct: 250 HLGSPILGDAVYGRSSET--------MLRHALHAHFLSVPHPGTGRLLHLHAPAPDDMLN 301 Query: 230 ALSQFGWRGLLPEN 243 A G G +P + Sbjct: 302 AWIALG--GAMPSD 313 >UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepID=B7GLK3_ANOFW Length = 292 Score = 252 bits (646), Expect = 6e-66, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 25/234 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L I+Y+D++++ +NKP S + ++ + Q+ V RLDR TS Sbjct: 80 LAIVYEDDYVIVINKPPHMSTIPSREHPHGTLANALLHHYEQQQLQTTVHVVTRLDRDTS 139 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G++L+ LL++Q +Q ++++RY A+ G++++ +D P+ + D I ++ R Sbjct: 140 GLVLVAKHRHVHHLLSEQQKQGRVKRRYEAVCHGYVIQLVGTIDAPIGRKGDSIIEREVR 199 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q AVTHY L V ++ +TGR HQ+R H +H+ HP++G Sbjct: 200 LD--GQRAVTHYEVLQQ-----------KNEMTHVSIQLETGRTHQIRVHFSHIGHPLVG 246 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 D +G LR++ + R LH+ +L+ HPF + +T HA L D + L Sbjct: 247 DDLYGGLREH--------IDRQALHSCELTFFHPFFEKTMTFHAPLPDDIARLL 292 >UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=A5IZB6_MYCAP Length = 305 Score = 252 bits (646), Expect = 6e-66, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 117/234 (50%), Gaps = 26/234 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIGQ-----HVFTAHRLD 54 L+I Y+DE+L+ +NKPSG +VH + ++ +V +M ++ + + HR+D Sbjct: 76 LDIRYEDEYLLILNKPSGLVVHPAPGHLNDTLVNALMYHFKNNLSDANGLLRLGIVHRID 135 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIAD 113 + TSG+L++ +E LA+ + HQI++ Y AI G L + ++ P+ + Sbjct: 136 KDTSGLLIIAKDNETHNELAKMLKNHQIKRTYLAICEGILPNKTTKINLPIQRDTKN--R 193 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K K + +VT+ L + + Y LV+ E +TGR HQ+R HLA+++H Sbjct: 194 KLMSIHKDGKSSVTYVHMLKSFYID-------NKPYSLVKCELETGRTHQIRVHLAYIKH 246 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 P+ GDS +G + LHA +LS HP + + +++ + + Sbjct: 247 PVYGDSIYGKSVDEFN---------QRLHAYKLSFMHPVINKLIEVYSDIPKEF 291 >UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C n=22 Tax=Gammaproteobacteria RepID=RLUC_HAEIN Length = 322 Score = 252 bits (644), Expect = 9e-66, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 14/233 (6%) Query: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLL 62 +IL++D+ L+ +NKPSG VH + ++ +R + + + HRLDR TSG+LL Sbjct: 99 QILFEDDCLIILNKPSGIAVHGGSGLNFGVIEALRALRPE-ARFLELVHRLDRDTSGILL 157 Query: 63 MGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKG 121 + A R L +Q +QK Y A+VRG W V+ L++ ++ R + Sbjct: 158 IAKKRSALRNLHEQLRVKTVQKDYLALVRGQWQSHIKVIQASLLKNELSSGERIVRVSEQ 217 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 +P+ T + LV+ P TGR HQ+R H + HPI D K+ Sbjct: 218 GKPSETRFSIEERY-----------INATLVKASPVTGRTHQIRVHTQYAGHPIALDDKY 266 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD ++ E GL RL LHA + HP GE L +A LD L + Sbjct: 267 GDKDFDKQMNE-LGLNRLFLHAFSIRFEHPKNGETLRFNASLDHQMKAILQKL 318 >UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=A9IIW7_BORPD Length = 324 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 96/236 (40%), Gaps = 17/236 (7%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV---FTAHRLDRPTSGV 60 ++ + + V+KP+G + H + ++ R V HRLD+ TSG+ Sbjct: 101 VVAESPDWIVVDKPAGLVTHPGAGNWSGTLLNGLLHRYPELARVARAGIVHRLDKDTSGL 160 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 +++ + A L +Q + + + Y A+ GWL +D P+ + Sbjct: 161 MVVARNELAQTHLVRQLQARSMGREYIALAHGWLPVAGKVDRPIGRDARVPVRMSVERPI 220 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 P+PA+THY L GR P V +TGR HQ+R HLA L HP++ D+ Sbjct: 221 APKPAITHYAPLRR-------GRAPDGPVTEVACRLETGRTHQIRVHLASLGHPLLADTL 273 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 +G G G R MLHA L P G P A D Q W Sbjct: 274 YG-------GRLTAGATRQMLHARALHFDDPGGGGPAAFRADPPDDMRQVQEALQW 322 >UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ4_9CHLO Length = 357 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 37/261 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTV----RDQIG---------QHVF 48 L+++++D+ LV VNKP G +VH S +V R G + Sbjct: 103 LDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSLVNALLFHCNERSNRGDDASKMIDVPRLG 162 Query: 49 TAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEE 107 HR+D+ TSG+L+M + A L QF +++RY AIV G E +D P+ + Sbjct: 163 VVHRIDKGTSGLLVMAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPARESGRIDAPIGRD 222 Query: 108 LDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 + A++++ A R LVE + +TGR HQ+R H Sbjct: 223 PADRLKMAIVRGATGRQAISNFGVRA---------RLVRGNASLVEWQLETGRTHQIRVH 273 Query: 168 LAHLRHPIIGD--------------SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFT 213 + HPI+GD + G + + R MLHA L HP T Sbjct: 274 AREMGHPIVGDEAYGGGGSAAAEFLRRDGAMSAAAAREIVAKCARPMLHARSLGFRHPVT 333 Query: 214 GEPLTIHAGLDDTWMQALSQF 234 GE ++ ++ A ++ Sbjct: 334 GEEISFAVEPPPDFVDAFTEL 354 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 71/256 (27%), Positives = 109/256 (42%), Gaps = 28/256 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQ--TVRDQIGQ-----HVFTAHRLD 54 L+ILYQDEWL VNKP+ +VH + + +V R+ + HRLD Sbjct: 109 LDILYQDEWLALVNKPADMVVHPAKGNWSGTLVNALQWHFREHLSTGAGHLRAGIVHRLD 168 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIAD 113 + TSGV+L+ R LA QFE ++ K Y AI G L ++ ++ L Sbjct: 169 KDTSGVILVAKDDLTHRDLAMQFESRKVFKEYVAIAAGELERDSDYIEGALKMHPYDRLK 228 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 D + A+++Y L + LV+++P+TGR HQ+R HL H+ Sbjct: 229 MIVSTDPDAKHALSYYEVLERFR-----------GFTLVKVQPRTGRTHQIRVHLLHVGC 277 Query: 174 PIIGDSKHGDLRQNR---------SGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 ++ D +G Q + + L R LHA +L HP TG+ + A L Sbjct: 278 AVLADKIYGGRAQVKLSEIAPGTPPAEDEVLLGRQALHAFRLRFQHPRTGQWIEAEAPLP 337 Query: 225 DTWMQALSQFGWRGLL 240 + L + Sbjct: 338 PDMRRTLDALRQHRAI 353 >UniRef50_C9M5C8 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5C8_9BACT Length = 276 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 23/242 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L++LY+ + ++ +NKP+G L D HRLDR TSGV+ Sbjct: 49 LDVLYRSDSVLVINKPAGLLSQPDTKGEDSVATRALGYASDPAFGAQLVHRLDRNTSGVM 108 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 ++ L +A R L F++ K Y A+V G L +D PL+++ DK K R Sbjct: 109 ILALDGQALRSLMVCFKERTANKTYLALVSGQLPPSGQIDAPLLKDPDK---KLVRVASN 165 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + AVT +R LAT ++ L E+E TGR HQ+R H+ H+ HPI+GD+K+ Sbjct: 166 GERAVTRFRRLAT-----------DGQFSLAEVEILTGRTHQIRVHMNHIGHPILGDAKY 214 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHP------FTGEPLTIHAGLDDTWMQALSQFG 235 GD + G++R MLHA+ L + P +G A L + G Sbjct: 215 GDFSA-KPQVRRLGIRRPMLHATCLVVNSPDDCLKEISGRR--FDAPLAADMASVCQKLG 271 Query: 236 WR 237 + Sbjct: 272 FE 273 >UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID=B7HGW1_BACC4 Length = 297 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 25/236 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L I+Y+D+ ++ +NK + S V ++ + + V RLDR TS Sbjct: 82 LCIIYEDDAVLIINKEANMSTIPSREHPAGSVANALLSHYDKQHLASTVHIVTRLDRDTS 141 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G++L+ + LL++Q +Q +++ Y AIV G ++E E ++D P+ + D I ++ Sbjct: 142 GLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHGKIVEREGMIDAPIGRKSDSIIERTVC 201 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 ED Q AVTH++ + + V LE +TGR HQ+R H+AH+ HP++G Sbjct: 202 ED--GQRAVTHFKVIDSTYHK-----------THVALELETGRTHQIRVHMAHVGHPLLG 248 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 DS +G R ++R LH+ L+ HP + ++ L + L Sbjct: 249 DSLYGGRRDE--------MKRQALHSKSLTFYHPILEKEMSFTIKLPSDMQEVLRH 296 >UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8FTI5_DESHD Length = 302 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 110/237 (46%), Gaps = 25/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 LEILY+D++ +A+NKP+G +VH + + VV + + HR+DR TS Sbjct: 83 LEILYEDDYFIAINKPAGQVVHPTPRYPRGTIGNAVVGYWLAKGEARPFRPIHRIDRNTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 GV+++G + A + +A Q +I K Y IV G +ME+ + P+ D + Sbjct: 143 GVVVIGKNQFAHQQMAWQHAHGRIHKCYRGIVEGQVMEDQGTIKAPIALAPDSFIQRQIS 202 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + PAVT Y+ L L+E +TGR HQ+R H HL HP++G Sbjct: 203 PE--GSPAVTLYKVLERY-----------QDASLLEFILETGRTHQIRVHCQHLGHPLLG 249 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D +G + R LH+S HP TGE TI A L + + L + Sbjct: 250 DDLYGG--------NLARINRQALHSSIYEFNHPLTGELTTIQAPLPEDLQRLLREL 298 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 25/236 (10%) Query: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTSG 59 EILY+D+ L+ VNKP G L+H + + V R + V HRLD+ TSG Sbjct: 87 EILYEDDHLLIVNKPVGLLLHPTERYHHVTLDHLVSGHFFRTGLEAKVRHVHRLDQDTSG 146 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFARE 118 V+L A LL + + I++ Y A V G + +E ++ P+ ++ + + R Sbjct: 147 VVLYAKHPWASALLDEMLRERTIKRTYVAYVSGQMPKERGKINEPIGKDRNHGTRR--RV 204 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 PA+THY+ VE + +TGR HQ+R H +H+ HP++GD Sbjct: 205 TPNGDPAITHYQVKERF-----------QTATKVECQLETGRTHQIRVHFSHIGHPLLGD 253 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +G R+ ++R LHA+ L HPF GE + + A L + Sbjct: 254 ELYGGKRE--------LIKRQALHAAVLKFEHPFGGEVIEVTAPLPLDLFHLEKKL 301 >UniRef50_A9B3Z2 Pseudouridine synthase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B3Z2_HERA2 Length = 560 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 92/255 (36%), Positives = 127/255 (49%), Gaps = 26/255 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAH-RLDRPTSGV 60 +EILY+DE ++ +NKP+G H D V + +R Q+ H RLDR TSGV Sbjct: 3 IEILYRDEQILVINKPTGVATHAPQGDLALTDV-ERALRAQLQLEYLAIHQRLDRDTSGV 61 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFARED 119 +L L A LA F +H I+K Y A+V G ++ + V+D L D + + D Sbjct: 62 MLFALDPAANANLATAFAEHTIEKTYQALVYGVPIQTQGVIDAALAPAGDGMIQVASAHD 121 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 + Q A+THYR L + P R+ L+EL+PKTGR HQLR H L HPI+GD Sbjct: 122 RRAQSAITHYRVLVS---------SPDQRFSLLELQPKTGRTHQLRVHCECLGHPIVGDP 172 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGL 239 + R RLMLHAS+L THP T +PL I A + + +GL Sbjct: 173 LYDVAR---------AAPRLMLHASELRFTHPLTQQPLHIQAPTPALFTRV-----AQGL 218 Query: 240 LPENERVEFSAPSGQ 254 + E +A +G Sbjct: 219 PELQQSTELAALNGL 233 >UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT6_THET1 Length = 313 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 27/238 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-----DQIGQHVFTAHRLDRP 56 L ++Y+D+ ++ ++KP+G +VH S D +V R Q HRLD+ Sbjct: 91 LRVVYEDDKIIVIDKPAGMVVHPSPGHYDNTLVNALIARYPDLLKQPTDRPGIVHRLDKD 150 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKF 115 TSG++++ + L Q + +I K Y + G L E ++ P+ +L Sbjct: 151 TSGLIIVARDLDTLNYLQGQMKARKIFKEYTLLCCGALDPPEGRIEAPIGRDLRDRTKMS 210 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 G + AVT Y + ++ +Y L P TGR HQ+R H A + HPI Sbjct: 211 VI--AGGKEAVTEYSTIQSL-----------GKYTLAIARPITGRTHQIRVHFAAIGHPI 257 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 GD +G+ R GL R LHAS+L + P GE H+ L + Q+L + Sbjct: 258 AGDPIYGNCRLE-------GLNRQFLHASRLGVVMP-NGEYKEWHSPLPEDLRQSLEK 307 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 108/286 (37%), Gaps = 54/286 (18%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR--------------------- 40 L+++++ + L+ VNKP+G +VH + R +V Sbjct: 74 LDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVDGGEVAADDERDEVSEDEVG 133 Query: 41 -----------DQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAI 89 D HRLD+ TSG+L++ A + LA+QF+ H + +RY AI Sbjct: 134 LSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRAHQPLAEQFKAHTVDRRYRAI 193 Query: 90 VRGWL-MEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTR 148 V G + ++ + + + + A THY + T Sbjct: 194 VWGRFAPSDGTIEGAIGRDPHHRQRMAVVPEDEGKWARTHYETVET-----------HAH 242 Query: 149 YGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLR--------QNRSGAEHF--GLQR 198 +VE E +TGR HQ+R H HP++GD K+G R R+ + L Sbjct: 243 TSVVEFELETGRTHQIRVHARAQGHPLLGDPKYGGQRVRYGTQSGTRRTFYDQLFETLPH 302 Query: 199 LMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLPENE 244 LHA +L HP T E L A W + L + + Sbjct: 303 PALHAYRLGFDHPTTEERLRFEADPPPAWRRVLRELRQEEGAGTTD 348 >UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SM47_9BACT Length = 302 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 23/235 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR----DQIGQHVFTAHRLDRPT 57 +EI+Y + +NKP+G VH + D+ +V D HRLD+ T Sbjct: 81 IEIIYDCDEFAVINKPAGITVHPAPGHADDTIVNAMLAEFDITDDNDLRPGIVHRLDKDT 140 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFA 116 SG++++ + ++ +L++ F I KRY A+ G E E ++ P+ Sbjct: 141 SGLMIVAKNRKSREVLSKVFADRDIDKRYLAVCWGKPKELEFTIEQPIGRHYKDRKRMCV 200 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 RED + + + R L L E+ TGR HQ+R H++H P+ Sbjct: 201 RED--GRYSKSGVRVLKQ-----------NNNAFLAEIRIFTGRTHQIRVHMSHAGFPLA 247 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 GD +G + + ++R LH+ +L+ PFTGE + + L + + Sbjct: 248 GDVVYGHRQSLK-----LPIKRQALHSFRLAFVSPFTGEDMVFESPLPLDMKELI 297 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 29/266 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVM------QTVRDQIGQHVFTAHRLDR 55 LEIL++D+ ++ +NK G +VH + +V + + HRLDR Sbjct: 87 LEILFEDDDVLVLNKAPGVIVHPGAGHEEGTLVHGLLAHCSRLASRGAPRRPGIVHRLDR 146 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG L++ S A L +QF+ H++ K Y A+V G + + + + Sbjct: 147 GTSGALMVAKSERAYLELIRQFKHHEVGKEYLALVYGTMAGASGEIRTGMGRHPVD-RKR 205 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A +KG + AV+ ++ L+ + KTGR HQ+R HL+H++HP Sbjct: 206 MAVLEKGGREAVSQWKVA-----------VAWGEVSLLRVVIKTGRTHQIRVHLSHMQHP 254 Query: 175 IIGDSKHGDLRQNRSGAEHFGL-------QRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 ++GD +G ++ + L R MLHA L+ HP +G L+ A L + Sbjct: 255 VVGDETYGGGKRKARAVKSDVLRELLMEVDRQMLHAVGLAFRHPVSGADLSFTAPLPPDF 314 Query: 228 MQALSQFGWRGLLPENERVEFSAPSG 253 L + + + E S PSG Sbjct: 315 AGLLERIR---ISLQKEGAGRSDPSG 337 >UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S0A2_9RHOB Length = 356 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 104/264 (39%), Gaps = 40/264 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRD-----QIGQHVFTAHRLD 54 L ++++D L+ V+KP G +VH + +V ++ D + HR+D Sbjct: 99 LTVVWEDADLIVVDKPVGMVVHPAPGSYTGTLVNALLHHCGDTLSGVGGAKRPGIVHRID 158 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL---------------MEEAV 99 + TSG+L++ + A LA QFE H + + Y A+V G + Sbjct: 159 KDTSGLLVVAKTDRAHHGLAAQFEAHSVTRHYIALVHGAPNAADPRLRGIRGVSFEPGGI 218 Query: 100 --LDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPK 157 + L + D G + AVT R L + P LVE + Sbjct: 219 VCIATNLARHKTDRQRQAVLFDSG-RHAVTRVRVLESYGTPPV--------AALVECWLE 269 Query: 158 TGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGA-------EHFGLQRLMLHASQLSLTH 210 TGR HQ+R H++H H ++GD +G R+ A R LHA+ L H Sbjct: 270 TGRTHQIRVHMSHAGHALLGDQTYGGRRKVAPKAVGEAVAQAANDFPRQALHAASLGFVH 329 Query: 211 PFTGEPLTIHAGLDDTWMQALSQF 234 P +GE L + L + Sbjct: 330 PVSGEELLFTSPLPADMAALTAAL 353 >UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K7_HALNC Length = 346 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 21/248 (8%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+Y+DE L+AVNKP+G VH + +M+ +G+ + AHR+DR TSG+L++ Sbjct: 111 IVYEDEALLAVNKPAGLAVHGGSNIPFGLIELMRQ-HTGLGEKLELAHRIDRDTSGLLIL 169 Query: 64 GLSSEAGRLLAQQFE-QHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKG 121 + L QF + +K+Y AIV G W + +D PL + + + + Sbjct: 170 AKTRATLHSLQTQFRPEGHAEKQYLAIVHGHWPDKLKRVDAPLEKWQGEGESHRVQVNPQ 229 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + AVTH+ LA L+ + +TGR HQ+R H AH HPI+GD K+ Sbjct: 230 GKEAVTHFAVLA-----------ANKNATLLRAQLETGRTHQIRVHTAHENHPIVGDEKY 278 Query: 182 GDLRQNR-----SGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 G ++ +GA L+LHA +L LTHP T +PL + A + D W Q Sbjct: 279 GQREWDKRLFPSTGASARRRPPLLLHAYRLMLTHPQTEQPLQLTAPIPDKWRSLAQQLNL 338 Query: 237 RGLLPENE 244 LPE++ Sbjct: 339 --TLPEHD 344 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 24/235 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH--VFTAHRLDRPTSG 59 ++ILY+D+ L+ NKP+G +VH + D V + V G+ V HRLD+ TSG Sbjct: 94 IDILYEDDHLLIANKPAGMMVHPIKQETDTLVHALAAVLAARGEQTSVHPVHRLDKDTSG 153 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFARE 118 +L+ SS +L + + I + Y A+ G L E +D P+ + + E Sbjct: 154 AILVAKSSYGHQLADRLLREGGIHREYLAVASGVLSEGAGTIDAPIGRDARHPTKRRVVE 213 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 PA+THY T E L + +TGR HQ+R H AH+ HP+ GD Sbjct: 214 S--GDPAITHYEVQQTSEEM-----------TLARVWLETGRTHQIRVHFAHIGHPLAGD 260 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 + +G R L+R LHAS+LS HP + + + A + + + Sbjct: 261 TMYGGARG--------LLRRQALHASKLSFLHPLLEKEIVVEAPIPSDMKRLMQA 307 >UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID=A8RHQ2_9CLOT Length = 287 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 21/233 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVF---TAHRLDRPTS 58 L I+Y+DE ++ +NK +G +H S D + + F +RLDR T+ Sbjct: 69 LSIVYEDEDILVINKDAGVPIHPSQGHYDNTLANAVSWYFHEKGEAFTYRVINRLDRDTT 128 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+L++ + +L++Q +I++ Y AIV G EE +D P+ ++ Sbjct: 129 GLLVLARHMLSACILSEQMTGRRIRREYRAIVLGHTPEEGTVDSPIARAEGSTIERRVDH 188 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + G + AVTH+R L E LV L +TGR HQ+R H+ + HP+ GD Sbjct: 189 ETGER-AVTHFRTLLYNEEK---------DLSLVSLSLETGRTHQIRVHMRSIGHPLPGD 238 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + ++ + R LH+ L HP TG+ + AGL + Q L Sbjct: 239 FLY--------CPDYRYIDRQPLHSYLLRFEHPITGKEMEFTAGLPEDMKQLL 283 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 21/247 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG----QHVFTAHRLDR 55 + I+Y+DE + V KP G +VH S +V ++ ++D + HRLD+ Sbjct: 82 INIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYHIKDLSSIGGVERPGIVHRLDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 T+GV+++ ++ A R L +QF++ + +K Y +V+G + ++ +D P+ Sbjct: 142 ETAGVMVIAKNNTAHRNLVRQFQERKTEKFYKVLVKGLVKKDYGAIDTPIARHPVDRKRF 201 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + R++ + A+T Y L RY L++++ TGR HQ+R H A + HP Sbjct: 202 WVRKE--GKEALTEYWVLK---------RYEKYEITLLKVKIHTGRTHQIRVHFASIGHP 250 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQR--LMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 ++GD +G + + E L ML A L HP GE + +T+ S Sbjct: 251 VLGDRTYG-FKSSSVPKELLSLMGECNMLIAYHLGFYHPTKGEWMVFEIEEPETFKSVYS 309 Query: 233 QFGWRGL 239 Sbjct: 310 WLEEHSP 316 >UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G4_9PROT Length = 315 Score = 249 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 + +LY+D+ L+ VNKP+G +VH + ++ R + AHRLDR TSGVL Sbjct: 94 IPVLYEDDSLLVVNKPAGMVVHGGSGHEAGLIEALKQSRGL--DDLRLAHRLDRDTSGVL 151 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAREDK 120 LM +A R L + F + +QK Y A++ G + L + + + ++ + + Sbjct: 152 LMAKHLDALRRLTESFRERDMQKTYFALIAGHPYAHAGRMSSNLAKGVVRGGERMVVDSE 211 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 + +VT Y+ + E Y +V L P +GR HQLR L H HPI+GD K Sbjct: 212 EGKASVTDYQVMIEYERH-------GFPYAMVALNPHSGRTHQLRVQLQHEGHPILGDGK 264 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +G+ Q + + G + LMLHA +L THP +G+ L A D W L Sbjct: 265 YGEKAQ-LAAYKSLGGKGLMLHAWRLRFTHPVSGKSLECKAPWPDNWSALL 314 >UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C6LL16_9FIRM Length = 313 Score = 249 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 25/234 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT---AHRLDRPTS 58 L+I+Y+DE L+ ++KP+ VH S + D + + F RLDR T+ Sbjct: 85 LDIVYEDEDLLVIDKPADMPVHPSIHNFDNTLANGLAYYYESRGEAFVYRCITRLDRDTT 144 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+LL+ + +G LA+ ++ +I + Y AIV G E +D P+ + ++ Sbjct: 145 GLLLVAKNMLSGAFLAEMGKRREIHREYLAIVTGKTEAEGTVDAPIARVEGSVLERCVDF 204 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 +G + AVTHYR L Y LV L+ +TGR HQ+R H+ ++ HP+ GD Sbjct: 205 QRGER-AVTHYRTLEY-----------RDGYSLVRLKLETGRTHQIRVHMKYIGHPLTGD 252 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 + ++ + LH+ L+ HP TGE + + W Sbjct: 253 FLY--------NPDYRLMDHQALHSHYLAFRHPITGERMEFTSQPP--WQGLWE 296 >UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR26_9FIRM Length = 301 Score = 249 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 26/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L I+Y+D++L+ VNKP+G LVH + + + ++ HRLDR TS Sbjct: 75 LHIVYEDDFLLIVNKPAGLLVHPTSDPTEPTLAHGILYYLHSKGALGAFHPIHRLDRNTS 134 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G++ + L+ +++ Y A+V G +D P+ + I + R Sbjct: 135 GLVAIAKHPHIQHALSGG-GAKGLKRLYLAVVTGIPSSLMGRIDAPIGRHPNSIIKRVVR 193 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D QPA+T YR L+T M LVELE TGR HQ+R HL+H+ HP++G Sbjct: 194 SD--GQPAITLYRVLSTFSM-----------ASLVELELLTGRTHQIRVHLSHIGHPLLG 240 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 D +G ++R LHA+ LS HP T + LT+ + L + + Sbjct: 241 DDLYGGATD--------LIRRQALHAASLSFRHPATDKVLTLTSPLPPDLADLIQLLRQK 292 >UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales RepID=A6LDZ7_PARD8 Length = 549 Score = 249 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 109/234 (46%), Gaps = 35/234 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L+ILY+D++L+ +NKP G L D D + + + HRLD TSG+L Sbjct: 340 LDILYEDDYLLVINKPEGMLSVPGKGDADSVYQRLSILYPE-ATGPIIVHRLDMATSGLL 398 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAREDK 120 L + EA + L QF+ IQKRY A++ G + +E + PL + + E+ Sbjct: 399 LAAKTKEAHQNLQAQFKNRTIQKRYIALLEGEVPQDEGEIRLPLCPDPLDRPRQIVSEEF 458 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH---LRHPIIG 177 G +PA+THYR L T+ L+ P+TGR HQLR H AH L PI+G Sbjct: 459 G-KPALTHYRVLER-----------TSGKTLIAFYPQTGRTHQLRVHAAHPLGLHCPILG 506 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH-------AGLD 224 D +G +RL LHA L+ THP T E + I + Sbjct: 507 DELYGRK-----------AERLYLHAEYLAFTHPITSERIEIQKSPAFPRCPMP 549 >UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta RepID=A4RT55_OSTLU Length = 332 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 109/273 (39%), Gaps = 57/273 (20%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ---------------- 45 L+I+++DE ++ VNK +G + H S +V + + Sbjct: 70 LDIVHEDESVLVVNKAAGMVTHPSAGHESGTLVNAVLGHCDLPELVVPTGNQALSDDDED 129 Query: 46 ----------------HVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAI 89 HRLD+ TSGV+++ + A L +QF ++++Y AI Sbjct: 130 DEDAVDEDEGARDGMIRPGIVHRLDKGTSGVMVVAKDASAHNSLCEQFAARVVRRKYVAI 189 Query: 90 VRGWL-MEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTR 148 + G + ++ P+ + + + A G + A ++Y +AT+ Sbjct: 190 LSGVPSPSKGRIEAPIGRDP-RDRLRMAVTQGGGRFAASNYEVIATL---------ANGN 239 Query: 149 YGLVELEPKTGRKHQLRRHLAHLRHPIIGDS--------------KHGDLRQNRSGAEHF 194 LVE +TGR HQ+R H H+ HPI+GD ++G + A Sbjct: 240 ASLVEWRLETGRTHQIRVHAKHIGHPILGDDTYGGGGGAAVSALSRYGVFDVKEAKALMS 299 Query: 195 GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 + R MLHA L THP +GE L + + Sbjct: 300 TIDRPMLHARTLGFTHPQSGEALDFSRDPPEDF 332 >UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q5PAD0_ANAMM Length = 327 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 21/255 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L+++Y+D ++ ++K VH + R G HRLD Sbjct: 82 LKVVYEDHDVIVIDKDPYIAVHPGNGIEHHTITNALLARFGAGLQSVGSSSRPGIVHRLD 141 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADK 114 + TSG+++ + A L+++ +K Y A+ G + + + + Sbjct: 142 KDTSGLMVAAKTENAYYRLSEELANQGFKKEYLAVAWGIPCPKRGVIHTNIRVKRSDITM 201 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + G +PA T Y + L+ TGR HQ+R H++H+ H Sbjct: 202 MEAANSGGKPAKTEYEVEQELGEV----------ASLIRCTLHTGRTHQIRVHMSHIGHS 251 Query: 175 IIGDSKHGD--LRQNRSG--AEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQA 230 I+GD K+G + RSG + +R LHAS L HP TG+ + + D Q Sbjct: 252 IVGDQKYGKNCKKCMRSGVPPDVKNFRRQALHASLLGFRHPSTGKYIEFTSKPADDIQQL 311 Query: 231 LSQFGWRGLLPENER 245 +S G L R Sbjct: 312 ISALERAGNLQARNR 326 >UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii RepID=B6J6C4_COXB1 Length = 327 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 22/243 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ---IGQHVFTAHRLDRPTS 58 L+++Y+DE L+ +NKP G +VH RD+ ++ D + HRLD+ TS Sbjct: 89 LDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLHYDPSLSVVPRAGIIHRLDKDTS 148 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+LL+ + + L + + QI + Y AIV+G L+ ++ P+ E Sbjct: 149 GLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLISGRTIEAPVGRHPIHRTRMAVVE 208 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 +PA+TH+R + + + ++ +TGR HQ+R H+AH+ HP+ GD Sbjct: 209 --FGRPAITHFRIIKRYRA-----------HTHIRVQLETGRTHQIRVHMAHIHHPLAGD 255 Query: 179 SKHGDLR------QNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G + L+R LH + L +HP P+ HA L L Sbjct: 256 PVYGSHVGIPVHLSDPLQTALKTLKRQALHGATLQFSHPVDQRPMACHAPLPADMAHLLE 315 Query: 233 QFG 235 Sbjct: 316 CLE 318 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 121/239 (50%), Gaps = 27/239 (11%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV--MQTVRDQIGQ----HVFTAHRLDRPTS 58 +Y+D++L +NK +G +VH S ++ +V M ++D G HRLD+ TS Sbjct: 78 VYEDKYLAIINKYAGMVVHPSKGHEEDTLVNAIMYKIKDLSGINGDLRPGIVHRLDKNTS 137 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + L++ F+ +I+K Y+AIV+G + +++ ++ K A Sbjct: 138 GLIIIAKDDKTHFKLSEMFKNKEIKKIYYAIVKGKVNKKSGRIETMIGRNPNDRKKMAVV 197 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D G + A+T++ + + E ++ L++++ +TGR HQ+R HL+H PI+GD Sbjct: 198 DNG-KLAITNFEVIDSNE-----------KFSLLKVDLETGRTHQIRVHLSHFFFPILGD 245 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 S +G + R MLHA L+ HP T E + + +++ALS R Sbjct: 246 SVYGRKDE---------YDRQMLHAYMLNFIHPITLEKIDVIGNFHSDFLRALSNTKLR 295 >UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermaceae RepID=C0QPR5_PERMH Length = 319 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 22/245 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 ++IL++DE + V KP+G +VH S +V + + HRLD+ Sbjct: 85 VDILFEDEDIAVVYKPAGMVVHPSPGHTSGTLVNALLYHFRNISEYGGKERAGIVHRLDK 144 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 T+G++++ S A + L +QF++ + KRY A+V G + + +D P+ + K Sbjct: 145 DTAGLMIIAKSEFAHKELQKQFQERTVDKRYIAVVTGIVQNDHGFIDLPIGRSIYN-RKK 203 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 E + A+T Y R +V+++ TGR HQ+R H + + HP Sbjct: 204 MGTEATNLRDALTEYWV---------KNRSEKENLTVVDIKLHTGRTHQIRVHFSAIGHP 254 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRL----MLHASQLSLTHPFTGEPLTIHA-GLDDTWMQ 229 + D +G + + + L A +++ HP TGE + I L + + Sbjct: 255 LFNDKVYGFKKSQLRSEKMRSISDQTLYHALLAYRIAFDHPRTGEKIDITLQKLPEHISK 314 Query: 230 ALSQF 234 + Sbjct: 315 VIEAI 319 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 108/240 (45%), Gaps = 27/240 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L ILY+D +VA++KP+G +VH +V R HRLDR Sbjct: 77 LRILYEDADVVAIDKPAGMVVHAGAGVHSGTLVNALLHRFATLSGVGGPLRPGIVHRLDR 136 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 TSGVLL+ + A + LA QF +I+K Y A+V G + E ++ P+ + A Sbjct: 137 FTSGVLLVAKNDAAHQKLAAQFSGREIEKVYLALVHGTVKPETGRIERPIARDPVHRARM 196 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 AR +G + A + YR L + L+E+ TGR HQ+R HLA +RHP Sbjct: 197 TARLAEG-RAAWSEYRVLRRF-----------PDFTLLEVRIGTGRTHQIRVHLASIRHP 244 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD+ +G L R LHA ++ P +G + I + L L Sbjct: 245 VVGDTLYG-------APAQPLLGRYFLHAHRIRFHLP-SGREMLIESPLPPDLEAWLGTL 296 >UniRef50_B5YAZ5 Pseudouridine synthase n=2 Tax=Dictyoglomus RepID=B5YAZ5_DICT6 Length = 226 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 26/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVF-----TAHRLDRP 56 LE++Y+D L+ VNKP+G LV + + + + + HRLD+P Sbjct: 7 LEVIYEDNHLLVVNKPAGILVQGDITKSTTLLEISKAYIKEKYKKPGNVFLAIVHRLDKP 66 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKF 115 SGV++ +S++ L++ F + +++K Y A+ +G ++ + L+ ++K Sbjct: 67 VSGVVIFARNSKSAGRLSEAFRERKVEKEYIALCKGIFKVKKGTISESLL-WVEKERKAR 125 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 +D + A+THY L + LV L P+TGRKHQLR HL+++ HPI Sbjct: 126 VSQDDKSKNAITHYEVLEEFK-----------NLSLVRLIPETGRKHQLRAHLSYIGHPI 174 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +GD K+G R + R+ LH ++++ HP + + A + D W + L Sbjct: 175 LGDEKYGGGRIFK--------DRIFLHCKKMAVPHPVRKDIMEFEAKIPDFWSEFLK 223 >UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO n=53 Tax=Bacillaceae RepID=YJBO_BACSU Length = 283 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 25/235 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVM---QTVRDQIGQHVFTAHRLDRPTS 58 L+ILY+DE ++ +NK S + + V RLDR TS Sbjct: 66 LDILYEDEHVLVINKQPYVSSIPSREHPSGSIANGIIDHYQTTGVRATVHLVTRLDRDTS 125 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G++L+ A +L+ + +++RY A+V G + + E +D P+ D I ++ Sbjct: 126 GIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRHPDSIIERTVT 185 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q AVTH+ V L+ +TGR HQ+R H+++L HP+ G Sbjct: 186 PD--GQKAVTHFYV-----------TCANDDMTSVALQLETGRTHQIRVHMSYLGHPLCG 232 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 D+ +G RQ + R LH+ LS HP T E + HA L + + Sbjct: 233 DTLYGGTRQE--------IGRQALHSEHLSFIHPLTQENMRFHAPLPQDMSKLIK 279 >UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7A7_9ACTN Length = 338 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 109/247 (44%), Gaps = 18/247 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIG-----QHVFTAHRL 53 L+I Y+D++L+ ++K +G + H S D+ + +V + +G HRL Sbjct: 86 LDIRYEDDYLLVISKQTGLVCHPSPGHVDDTLSNALVAHCGYEHLGLLQGDDRPGIVHRL 145 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIA 112 D T+G+++ + + L +RY +V+G++ +E + + Sbjct: 146 DMDTTGLMVAAKDNTTQQALQDLIRLRVFDRRYIVLVQGYVTPDEGTITTGIARSKKNRL 205 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 +D + A+T ++ L E Y L+E TGR HQ+R H+ ++ Sbjct: 206 KMCISKDPASREAITTFKTLERFE-----AGSKDDGYSLLECHLYTGRTHQIRVHMRYVG 260 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 H ++GD +G + A + GLQR LH+ ++S HP T E L L + L+ Sbjct: 261 HSVVGDPLYGR----KGDALNQGLQRQFLHSWRMSFDHPITHEHLQFCDKLPSDLSEVLA 316 Query: 233 QFGWRGL 239 + + + Sbjct: 317 RLQPQSM 323 >UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7B4_9BACT Length = 301 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 102/235 (43%), Gaps = 22/235 (9%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTV----RDQIGQHVFTAHRLDRPTSGV 60 +Y D+WL V K +G VH +D +V G HRLD TSG+ Sbjct: 81 VYADDWLAVVEKLAGIAVHPGAGRKDGTLVNGLVKTFGPLPGAGLRPGIVHRLDIGTSGL 140 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFARED 119 +++ + +A L ++F Q +++K Y A+V GW+ + LD P+ R D Sbjct: 141 MVVARTPQAYLFLQREFSQRRVEKTYLALVHGWIPASQGTLDGPIGRSRYDRLKMAVRAD 200 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 + AVT YR L T L +TGR HQ+R H+A + + GD Sbjct: 201 --GRRAVTRYRTLWT-----------RGSLSLTACRIETGRTHQIRVHMASIGCYLDGDR 247 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +G + + HF R+ LHA +LS HP G + + L D + L + Sbjct: 248 LYGP----KDVSRHFLEGRVFLHAWRLSFHHPSDGRTMNFRSPLPDELIGVLKKI 298 >UniRef50_C0N6T7 Pseudouridine synthase n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6T7_9GAMM Length = 318 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 125/235 (53%), Gaps = 14/235 (5%) Query: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLL 62 +I+++D+ ++ +NKPSG VH + + + ++ ++ + HRLDR TSG LL Sbjct: 96 DIIFEDDSMLVLNKPSGLAVHAGSQIQVGVIEAFRIIKPELA-FLELVHRLDRDTSGCLL 154 Query: 63 MGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDKG 121 + S ++ L QQ QI KRY +++G L E +++ PL++ ++ + Sbjct: 155 LAKSRDSLLNLQQQMLSDQIDKRYLTLLKGILPNAEELVEQPLLKNTVSSGERMVKVTPD 214 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + A T + + ++ +A L E++ TGR HQ+R H A +HP+ GD K+ Sbjct: 215 GKRAKTLF--IRQQDLSLAQ---------LTEVKLYTGRTHQIRVHAAWTQHPVAGDDKY 263 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD N++ + FGL+RL LHA +L + HP +GEP+ + A L Q +++ Sbjct: 264 GDREFNKTL-KSFGLKRLFLHAWRLGIRHPVSGEPMQLEAPLPTALQQVITKLEL 317 >UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia RepID=B1ZYX0_OPITP Length = 311 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 23/241 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L +L++D+ ++AVNK +G +VH ++ +V + HRLD Sbjct: 80 LTVLFEDKHMLAVNKAAGMVVHPGVATSEDTLVHALLAHCAGSLSGIGGVERPGIVHRLD 139 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 + T+GV+++ + A R LA QF ++K Y A+V G +D + + Sbjct: 140 KETTGVIVVAKTDAAHRALADQFATRTLKKEYVALVAGVPRLLSGSIDRAIARHP--VHR 197 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 +G +PA T + + LV TGR HQ+R HL L H Sbjct: 198 HRMTVGEGGRPARTDWELVEAFGDIG----------ALVRCRIFTGRTHQIRVHLKSLGH 247 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GD+ +G + R + R+MLHA L LTHP +G+ L + A L ++ + + Sbjct: 248 PILGDALYGWKPEPRLATQPA---RVMLHAEHLVLTHPISGKELDLRAPLPKDFVAMIKE 304 Query: 234 F 234 Sbjct: 305 L 305 >UniRef50_C5S931 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=C5S931_CHRVI Length = 346 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+++DE L+ ++KPSG VH + ++ +R G+ + HRLDR TSG L++ Sbjct: 122 IIHEDERLLVIDKPSGLAVHGGSGLSYGLIESLRQLRP--GRELELVHRLDRDTSGCLVV 179 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFARED-KG 121 A R L + + KRY A++ G L E ++D PL + + ++ R D +G Sbjct: 180 CKRRSALRELHALIREGGLDKRYLALILGELPRAELLVDAPLKKNVLSSGERLVRVDAQG 239 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + A T +R L + LVE E TGR HQ+R H AHL P+ GD K+ Sbjct: 240 GKEARTRFRRLKRFAID-------GQALTLVEAELITGRTHQIRVHAAHLGTPLAGDDKY 292 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 GD N+ + +GL+RL LHAS LS PL + L D Q L Sbjct: 293 GDEAANQRL-KGYGLKRLFLHASALSFKLECMARPLRLECPLPDELQQVLDALE 345 >UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Tax=Spiroplasma citri RepID=Q14NK8_SPICI Length = 306 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 25/244 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR------DQIGQHVFTAHRLDR 55 L ILY+D +L+ ++KP+ +VH + +++ +V R Q HR+DR Sbjct: 81 LTILYEDSYLMVIDKPNNLVVHPAPGHQNDTLVNALLARGVQWSTASGEQRPGIVHRIDR 140 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADK 114 T+G L++ + L QQ + Q+Q+RY A+V G ++E A +D P+ + + K Sbjct: 141 QTTGTLIIAKNDVVHHQLQQQIQTKQLQRRYLALVHGQIIENRAKIDAPIGRDPNN-RKK 199 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 K + A+T+ + Y +E E ++GR HQ+R HL ++ HP Sbjct: 200 MVVTAKNSKKALTNIVVIERF-----------NDYTYIECELESGRTHQIRAHLKYINHP 248 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 I+GD +G + + E FG LHA QL HP T E LTI A L + Q L+ Sbjct: 249 IVGDPLYGTVADKK---ESFG---QYLHAYQLRFIHPVTKESLTITAALPQEFEQRLAIL 302 Query: 235 GWRG 238 +G Sbjct: 303 RAKG 306 >UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV48_METI4 Length = 325 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 24/244 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV---VMQTVRDQIGQ---HVFTAHRLDR 55 LEILY+DE ++ VNK G +VH S +V + G HRLD+ Sbjct: 91 LEILYEDEEILIVNKQRGMVVHPSCGHWSGTLVNSLLFHYGESLPGSSLLRPGIVHRLDK 150 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSGV+++ + + + L QF Q +QK Y + + + K Sbjct: 151 DTSGVMVIAKTERSLKSLLLQFSQRTVQKVYLCLCKNRFPYLRYSFEANIHRHASDRKKM 210 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 A + A T + L + +++ ++ EP +GR HQ+R HL+HL PI Sbjct: 211 AVHRLKGKTAETRFTLL-----------FASSQASFLKCEPVSGRTHQIRVHLSHLGFPI 259 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 IGD +G + L+LHA L + HP +G+ + A L + +AL F Sbjct: 260 IGDPLYGKGVRKYPFP-------LLLHAYALKIEHPRSGKKIEFMAPLPQDFKEALDFFY 312 Query: 236 WRGL 239 R Sbjct: 313 GRNF 316 >UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae RepID=A8MF48_ALKOO Length = 305 Score = 246 bits (628), Expect = 7e-64, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 24/234 (10%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVV---VMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +Y+D L+ VNK G + H + D + + I V +RLD TSG+L Sbjct: 89 VYEDVDLILVNKEPGIVTHPTKSHPDWTIANGAALYLKSKGIDCKVRFVNRLDMDTSGLL 148 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDK 120 ++ ++ A +L++Q ++ +I+K+Y A V G + E E ++ P+ + D+ Sbjct: 149 IIAKNAYAHHVLSEQMQEDRIEKKYIAFVWGVIKEDEGRIEAPIYRTTMDSIKRVV--DE 206 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 Q ++T ++ L + +VE++ TGR HQ+R H+ HL HP+IGD+ Sbjct: 207 RGQESITEFKVLERYK-----------NATMVEVKLLTGRTHQIRVHMEHLGHPLIGDTL 255 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +G + + R LHA L P + + A L + + Sbjct: 256 YGK-------EDAELIDRQALHAEYLRFWQPRFKRAIEVKADLPADLLSLRDKL 302 >UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clostridium thermocellum RepID=A3DDK9_CLOTH Length = 318 Score = 245 bits (627), Expect = 9e-64, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 31/251 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 ++I+Y+DE+L+A+NK G +VH + + V + I + + RLDR TS Sbjct: 79 IDIIYEDEFLIALNKQPGIVVHPTCSHPGGTLANAVAFHLQKKGIVKKIRPVIRLDRDTS 138 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G+++ + L +Q K Y IV L + +D P+ + I + Sbjct: 139 GIIIFAKNPYCQEFLIRQMNDKTFIKEYIGIVHKVLENDNGTIDLPIARKPGSIMLRHIS 198 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D PAVTHY L + LV+ +TGR HQ+R H + HP++G Sbjct: 199 PD--GDPAVTHYTVLERL-----------NGATLVKFRLETGRTHQIRVHCQAIGHPLLG 245 Query: 178 DSKH----------GDLRQ----NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 D+ + G+ N + R LH+ + HPFT + L I A + Sbjct: 246 DTLYPFEDTPYSLSGNNPHITQANTPSITSGIITRQALHSQRAVFLHPFTKKILEITAPI 305 Query: 224 DDTWMQALSQF 234 + AL Sbjct: 306 PEDMKSALEIL 316 >UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQN9_ALCBS Length = 317 Score = 245 bits (627), Expect = 9e-64, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 14/230 (6%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMG 64 +Y+D+ L NKP+G VH + ++ + Q + + HRLDR TSG++++ Sbjct: 98 VYEDDQLFVFNKPAGLAVHGGSGVSLGLIEALRVMFPQ-ERELELVHRLDRDTSGLIMVA 156 Query: 65 LSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQP 124 R L + + QI+KRY + +G+ +E LD PL++ ++ ++ R + +P Sbjct: 157 RRRSFLRKLQRLMQGGQIEKRYWLLCQGFKGKERTLDAPLLKMMNG-NERIVRVSREGKP 215 Query: 125 AVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDL 184 +VTH+R L LVE +TGR HQ+R H ++GDSK+G Sbjct: 216 SVTHFRLLERFAQAQ-----------LVEATLETGRTHQIRVHSQFGGFALLGDSKYGIA 264 Query: 185 RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + AE G +RL LHA L HP TG+ LT+ A LDD + L+ Sbjct: 265 KGEALLAE-IGRRRLCLHARTLVFVHPNTGKRLTVTAPLDDDYEAILTAL 313 >UniRef50_A3Y8C6 Pseudouridine synthase n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8C6_9GAMM Length = 322 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 17/232 (7%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+Y+D L+ VNKPSG VH V V++ +R + + + HRLDR TSG++++ Sbjct: 100 IVYEDAGLMVVNKPSGLAVHGGSGLNFGLVEVVRQLRSK-EKSIELVHRLDRDTSGLIMI 158 Query: 64 GLSSEAGRLLAQQFEQHQ-IQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKG 121 + L + + +QK Y A+V G W + ++ PL++ K ++ + Sbjct: 159 SKKRSVLKQLHAALREKEGVQKTYQALVYGSWPKRKQQVNAPLLKNELKSGERIVKVHTE 218 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + ++T ++ L E Y LVE EP TGR HQ+R H H +PI+GD K+ Sbjct: 219 GKESLTRFKLLRQFE-----------GYSLVECEPVTGRTHQIRVHTLHAGYPIVGDDKY 267 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 QN+ A+ G +RL LHA++L + + + + +DD W A++Q Sbjct: 268 SPSEQNKE-AKGLGFKRLCLHAAKLDIM--LNDQRILVEVPIDDEWRNAMNQ 316 >UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J479_DESRM Length = 303 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 25/236 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L ILY+D L+AVNKP G LVH + + V+ ++ HRLDR TS Sbjct: 84 LNILYEDAHLLAVNKPPGMLVHPLTNETSGTLANGVLYHWLQQGTIDRFRPVHRLDRNTS 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G++L+ + + L Q +Q Q +RY A+V+G + E+ V+ P+ E + Sbjct: 144 GIVLIARNPYVQQQLQIQMKQGQFVRRYLALVKGKVQPEQGVIQAPIALEEGSFIKRMI- 202 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + A++HY+ L T + LV +E +TGR HQ+R H+AH+ HP++G Sbjct: 203 -SPAGKEAISHYQVLRTF-----------NQASLVRVELETGRTHQVRVHMAHMGHPLLG 250 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 DS +G N ++R LH + L+ HP G + I + Q + + Sbjct: 251 DSLYGGDTSN--------IKRQALHCAYLAFNHPVQGSRIKISCSVAGDIRQLMEE 298 >UniRef50_A6DMG7 tRNA pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMG7_9BACT Length = 246 Score = 244 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 103/241 (42%), Positives = 137/241 (56%), Gaps = 10/241 (4%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMG 64 LY+DE+LV K + VHRS + RD + ++ GQ+V+ HRLDRP SG LL Sbjct: 10 LYEDEYLVVAKKLAKISVHRSEMCRDRRTLLTMVRNKLGGQYVYAVHRLDRPVSGPLLFA 69 Query: 65 LSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQP 124 S E R L +QF + ++K+Y A+VRGWL + +D L+++ + Q Sbjct: 70 KSPEMCRELQKQFNEKTVEKKYIALVRGWLEGKGKVDKQLLKKSNGTI----------QD 119 Query: 125 AVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDL 184 +T YRGLAT E+ G++PT RYGLVELEP TGR HQLRRH+ L +PIIGDS GD Sbjct: 120 CLTRYRGLATAEIDEPLGKFPTVRYGLVELEPVTGRYHQLRRHMRDLAYPIIGDSTDGDS 179 Query: 185 RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLPENE 244 QNR E F L+RLMLH LS HP + E + I+ D ++ Q G + E Sbjct: 180 HQNRFFREKFELRRLMLHCFYLSFKHPVSQELIKIYLEPDRDLLRIYEQLGMYEQFKQLE 239 Query: 245 R 245 R Sbjct: 240 R 240 >UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID=B7GEZ0_ANOFW Length = 315 Score = 244 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 25/229 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L I+++D+ ++ VNK + VH + + + V + I V HRLDR TS Sbjct: 96 LHIVFEDDHVLVVNKRAHMDVHPTQPGQTNTLANAVAFHFQCEGIYSKVRHIHRLDRDTS 155 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAR 117 GV+L + AG +L Q + I++ Y A+V G++ ++ ++ P+ + + R Sbjct: 156 GVILFAKHALAGAILDQYLAKRTIRRTYIALVHGYVKQKKGTIEAPIGRDRHHPTRR--R 213 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 K A+THY L + LV L TGR HQ+R H++++ HP++G Sbjct: 214 VSKTGDTAITHYERLQYDKQK---------HVSLVRLTLDTGRTHQIRVHMSYIGHPLVG 264 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 D+ +G + R LHA LS HPFT E +T A L D Sbjct: 265 DTLYGGKPW---------IDRQALHAFSLSFLHPFTEELITCSA-LPDE 303 >UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales RepID=Q2GGY1_EHRCR Length = 337 Score = 244 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 101/251 (40%), Gaps = 24/251 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 + ++Y+D ++ +NK G VH + +V HRLD Sbjct: 96 ISVVYEDHDIIIINKAPGITVHPGAGTNNNTLVNALVAHYGNSLSHVGKATRPGIIHRLD 155 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 + TSG++++ + ++ L+ + QI+K Y A+V G + + + + + Sbjct: 156 KDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAVVWGLPNPKSNTIKNYICVKPNNKQM 215 Query: 114 KFARE-DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + A+T Y+ + + L++ TGR HQ+R H++++ Sbjct: 216 MTVTHLPHKGKLAITEYQTQKSF----------SNIASLIKCRIHTGRTHQIRVHMSYIG 265 Query: 173 HPIIGDSKHGDL-----RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 + IIGD K+G + + L+R LHA +L THP + + H+ + + Sbjct: 266 NSIIGDQKYGKNNSKSVKYAKQSTIINTLKRQALHAYKLGFTHPTSNTYIEFHSYIPNDI 325 Query: 228 MQALSQFGWRG 238 + + Sbjct: 326 QMLIDELEQLS 336 >UniRef50_A2U235 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A2U235_9FLAO Length = 234 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 84/241 (34%), Positives = 133/241 (55%), Gaps = 12/241 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRD--EKVVVMQTVRDQIGQHVFTAHRLDRPTSG 59 LEI+Y+D +L+ V KP+ LVH ++ R+ ++ ++Q V ++ G V+ HRLDR TSG Sbjct: 3 LEIIYEDAYLLCVTKPNNVLVHHAYHSRNMADEKSLLQLVSEETGLKVYPIHRLDRKTSG 62 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARED 119 +L+ E F ++QIQK Y+ +VRG+ +D P+ + Sbjct: 63 AILLAKEKEYVAKFQDLFTKNQIQKIYYGVVRGFSPSTKRIDSPVKGRDANVH------- 115 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 + A+T + LA + + +A Y ++RY L+EL PKTGR HQLR H + HP+IGD+ Sbjct: 116 ---KEALTELKTLAKITLDIAVKPYDSSRYSLIELFPKTGRMHQLRVHSNKISHPLIGDA 172 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGL 239 K+GD + ++FG + L LHA +L HP+T E L + + W+Q +F W+ Sbjct: 173 KYGDKNHDMMFEQNFGFKNLFLHAGKLEFIHPYTQETLILKSTFPTDWIQLFEKFNWKNP 232 Query: 240 L 240 L Sbjct: 233 L 233 >UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae RepID=C7MN62_CRYCD Length = 347 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 99/249 (39%), Gaps = 22/249 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD--------QIGQHVFTAHRL 53 L++ ++D W++A++K +G VH + +V Q HRL Sbjct: 82 LDVRFEDRWMMAISKQAGLCVHPAPGHEGGTLVNALIYAYGRDSLAHVQGDDRPGIVHRL 141 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIA 112 D TSG+++ G L H++ +RY +V G + + +D P+ D Sbjct: 142 DMDTSGLMMCAKDDTCGMALQDLVRDHKVDRRYLTLVHGNIAFDTGQIDEPIGRVGDDRL 201 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + A+T + L E Y L+E TGR HQ+R H+ + Sbjct: 202 RMKISYRPTARNALTTFTVLERFE-----AGRADNGYTLLECRLYTGRTHQIRVHMEFIG 256 Query: 173 HPIIGDSKH--GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQA 230 H +GD + G+ + N L R LH+ LS HP TG+ + + GL A Sbjct: 257 HCCVGDPLYRWGNEQVN------LELSRQFLHSYSLSFNHPMTGDDIALVDGLPPDLFGA 310 Query: 231 LSQFGWRGL 239 L R + Sbjct: 311 LRSLEDRSM 319 >UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus RepID=C0MA80_STRE4 Length = 300 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 106/239 (44%), Gaps = 24/239 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTV---RDQIGQHVFTAHRLDRPTS 58 L+I+Y+DE + +NKP+G+ S + + ++ +D + V RLDR TS Sbjct: 76 LDIVYEDEHFLILNKPAGYASIPSAIHSNTIANFIKAYYIKQDYPNKQVHIVTRLDRDTS 135 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW--LMEEAVLDYPLVEELDKIADKFA 116 G++L A L +Q +Q I KRY+A+V G L ++ + P+ D I + Sbjct: 136 GLMLFAKHGYAHARLDKQLQQRAINKRYYALVCGQERLPDQGEIIAPIGRTDDSIITRTV 195 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 + A T Y+ +A V LV++ TGR HQ+R H AHL P++ Sbjct: 196 TPK--GKYAKTSYKVIARYPENV----------SLVDITLHTGRTHQIRVHFAHLGFPLL 243 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 GD +G G G+ R LH LS THPFT L D + + Sbjct: 244 GDDLYG-------GRLDLGMTRQALHCHHLSFTHPFTESRSDHTICLTDDFESVIIDLQ 295 >UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A8F4Z7_THELT Length = 294 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 28/234 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-VMQTVRDQIGQHVFTAHRLDRPTSGV 60 L+ILY+D+ L+ +NK +G +H S R ++ + + G HRLDR TSGV Sbjct: 86 LDILYEDDNLLILNKKAGITIHPSEKTRSTTLIQGLHFYGAKKGFKPHLVHRLDRDTSGV 145 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L++ + + R L+ F ++K Y +V G + + +D PL Sbjct: 146 LVIAKNVKTARTLSHMFRNRLVKKEYITLVSGKIFGDGFIDKPL---------------- 189 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 A+T Y+ L L+ + TGR HQ+R+H A + +P++GD Sbjct: 190 DGSEALTEYKVLENFR-----------DTSLLRVILHTGRTHQIRKHFALIGNPVVGDIL 238 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +GD + N + L+R LH ++S T+P ++I A L D + + Sbjct: 239 YGDKKVNELFKKKHNLRRQFLHCIRISFTNPSEPGVISIKAPLPDDLERVIKGL 292 >UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBY1_GARVA Length = 321 Score = 242 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 24/241 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV-VVMQTVRDQIGQHV------FTAHRLD 54 + I+Y D+ +V ++KP G H + V ++ V I + RLD Sbjct: 92 IPIIYNDDDVVVIDKPVGVASHAAKGWSGPTVPECLEAVGIDIKTTLCDESRKGIVSRLD 151 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIAD 113 TSG++L+ + A ++ QF +H ++K YHA+V+G L ++ A +D P+ K++D Sbjct: 152 VGTSGLMLVCKTDFAYEVMKNQFAKHIVKKTYHALVQGDLAQDKATIDAPIGR--AKVSD 209 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 +PAVTH+ L ++ LV + +TGR HQ+R H + + H Sbjct: 210 FRFTITSDGKPAVTHWDVLERF-----------SQATLVSVNLETGRTHQIRVHFSSIGH 258 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++GDS +G N A+ GLQR LH+ +L+ THP TG+ +T+ + AL Sbjct: 259 PLVGDSMYG---ANPVLAQKLGLQRQWLHSMELTFTHPRTGKSVTVKSHYPLDLQHALEA 315 Query: 234 F 234 Sbjct: 316 M 316 >UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae RepID=A5INM9_THEP1 Length = 304 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 28/238 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-VMQTVRDQIGQHVFTAHRLDRPTSGV 60 L++LY+ + + +NKP +H ++ + + G F HRLD+ TSG+ Sbjct: 85 LDVLYEGKHYLVLNKPPNIAIHPGKGVHVATLIEGLLHYGQEKGFSPFLVHRLDKDTSGL 144 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L++ EA R+L + F+ I+K Y +VRG + PL Sbjct: 145 LVVAKDREAARILTELFKDRNIEKEYVTLVRGTPENNMKITIPL---------------- 188 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 Q A++ + ++ L+ ++ TGRKHQ+RRHL+ + P++GD Sbjct: 189 DGQEAISEIVSVKSLR-----------DVSLLRVKIHTGRKHQIRRHLSQIGFPVVGDDT 237 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 +GD NR + +GL+RL LH+ ++ P+T E A L D + L+ R Sbjct: 238 YGDRHFNREFRKRYGLKRLFLHSYRMKFIDPWTEEEKDFRAPLPDDLLSVLNFLEERS 295 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 107/249 (42%), Gaps = 28/249 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVM-----QTVRDQIGQ-HVFTAHRLDR 55 L I+Y+D++L+ +NKP +VH + +V Q + G HRLDR Sbjct: 91 LNIIYEDDYLMLINKPYDMVVHPAGGHPSGTLVNAVTFYCQNLSQINGPLKAGIVHRLDR 150 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSGV+L+ S +A QFE+ ++K Y A+V G + + ++ P+ K Sbjct: 151 DTSGVMLVIKSDAVHSHIAMQFEKRLVKKEYFAVVEGEVAFDSNEINMPIGRHRVD-RQK 209 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A + A + Y + Y LV++ PKTGR HQ+R H+ + HP Sbjct: 210 MAVRRDTGKNATSVYEVIERFR-----------GYTLVKIMPKTGRTHQIRVHMQAIGHP 258 Query: 175 IIGDSKHGD---------LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDD 225 ++ D + L + R+ E ++R LHA ++ HP + + + + Sbjct: 259 VVADEMYSKYNACFRSDLLGKERAPDEGSIIERQALHAHRIEFFHPILNKQMAFQVDMAE 318 Query: 226 TWMQALSQF 234 +S Sbjct: 319 DISFLVSAL 327 >UniRef50_Q28US1 Pseudouridine synthase n=43 Tax=Rhodobacterales RepID=Q28US1_JANSC Length = 354 Score = 242 bits (618), Expect = 9e-63, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 103/251 (41%), Gaps = 28/251 (11%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ++Y+D+ ++A+NKP+G + + ++ + HRLD+ TSGVLLM Sbjct: 99 VIYRDDHIIAINKPAGLPTQGGTGQSRHVDGLAEALKFGLEDKPRLVHRLDKDTSGVLLM 158 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIA------DKFA 116 + + L F +K Y A V G + LV+ + Sbjct: 159 ARTRMGAKALTDAFRLRSTRKIYWAAVAGSPLPRMGTIKLGLVKAPGHGRGGENEKMRAV 218 Query: 117 REDK-----GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 D+ G + A T Y ++ + R L P TGR HQLR H+A + Sbjct: 219 PVDEIAQVDGAKRAETDYAVMSNL----------GGRVCWCALVPITGRTHQLRAHMAEI 268 Query: 172 RHPIIGDSKHGDLRQNRSG---AEHFG--LQR-LMLHASQLSLTHPFTGEPLTIHAGLDD 225 HPIIGD K+G Q G G + R L LHA LS HP TG + + A L + Sbjct: 269 GHPIIGDGKYGGSGQENLGDGWGAQLGGEISRKLHLHARSLSFRHPMTGAQVNLVAPLPE 328 Query: 226 TWMQALSQFGW 236 + GW Sbjct: 329 HMAKTWDTLGW 339 >UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B8DF66_LISMH Length = 289 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 112/231 (48%), Gaps = 24/231 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-VMQTVRDQIGQ--HVFTAHRLDRPTS 58 LEI+Y+D++L+ VNKP H + + +Q ++ GQ + HRLD+ TS Sbjct: 78 LEIIYEDDFLLVVNKPVDMKTHANDSYETDTCANAVQYYLEKTGQDANALAVHRLDQTTS 137 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAR 117 G++L + A L+ Q E I + Y A V G W + ++ P+ E+ + + + Sbjct: 138 GLVLFAKNKLAIAGLSWQMENRAIHRTYLAAVDGTWGLVMQTINKPIGEDRHHGSRR--Q 195 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 QPAVTH + L LVE + +TGR HQ+R HL+ + HPIIG Sbjct: 196 ISPYGQPAVTHVKVLENDNEKNT---------SLVECQIETGRTHQIRVHLSGIGHPIIG 246 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 D+ +G + R+MLHA +L L HPF G+ + A D W+ Sbjct: 247 DTLYGGSPR---------ANRIMLHAEKLHLNHPFKGKEMNFSAPAGDDWV 288 >UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZW0_9FIRM Length = 318 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 111/240 (46%), Gaps = 27/240 (11%) Query: 2 LEI--LYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-VMQTVRDQIGQ--HVFTAHRLDRP 56 +EI +Y+DE L+ ++KP+G +VH + + + + D +G+ + +RLD Sbjct: 94 IEINAVYEDEHLLVIDKPAGIVVHPTHGYEENTIAHALIHYMDTVGEEFKIRFINRLDMD 153 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKF 115 T+G+L++ + + + ++ ++KRY A+V G E ++D P+ + + Sbjct: 154 TTGLLMIAKNQFIQNAVVSEMKRGNVEKRYLAVVHGLPCNREGIIDAPIKAVEGEPRRQV 213 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 +G +P++T Y+ + G +++ TGR HQ+R HL H+ PI Sbjct: 214 M---EGGKPSITEYKVV---------GVSDELNVSFLDVRLHTGRTHQIRVHLKHIGCPI 261 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD +G R +LH+ L THP + + + + A L D L+ Sbjct: 262 LGDEFYGGKES---------ADRQLLHSRYLRFTHPVSKKIVELTANLPDDIASILTHMQ 312 >UniRef50_B1YJB1 Pseudouridine synthase n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJB1_EXIS2 Length = 293 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 22/229 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L+IL++D+WL+ VNKP G S L + + V+ + QI + +RLDR TS Sbjct: 81 LDILFEDDWLLIVNKPPGMASIPSRLHPERSLSNFVLGYYRQHQIPYAIHIVNRLDRDTS 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+++ S A L++ + + +RY A++ G + + +D P+ + ++ RE Sbjct: 141 GLVVFAKHSLAHHQLSKMQQNGLLDRRYVALIEGTIPAQ-TIDLPIGQTDHSFMERMVRE 199 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D Q A+TH + T E A R + ++ +TGR HQ+R HLA L HP++GD Sbjct: 200 D--GQQAITH---ILTSEPITAFSR----ELSRLTIKLETGRTHQIRVHLAALGHPLVGD 250 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 + + + R LH++ + HP TGE +T A L D Sbjct: 251 TMY---------KGTPLIARQALHSASATFPHPGTGEVMTFVAPLPDDL 290 >UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U613_HYDS0 Length = 308 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 21/242 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG------QHVFTAHRLDR 55 ++ILY+D L V KPSG H + +V + + HRLDR Sbjct: 79 IDILYEDNDLAVVVKPSGMPSHTGPGHDENTLVNALLAKFGDLSVIGGVERPGIVHRLDR 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 T G++++ + + + L+ F+ ++ K Y AIV G +E ++ + Sbjct: 139 YTHGLMVIAKNDVSHQKLSLMFKNKEVDKHYKAIVYGISRFKEQTIETFIRRHPTNRLK- 197 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A+T Y + P L++++ TGR HQ+R H++++ HP Sbjct: 198 -FEVANEGKLAITKY-----------SLEKPLKNASLLDIKIYTGRTHQIRVHMSYIGHP 245 Query: 175 IIGDSKHG-DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 I+GD+ +G EH +R +L A +LS HP + +P+ + D + L Sbjct: 246 IVGDTLYGYKHSYFDKTLEHMIGKRFLLVAYKLSFLHPKSQKPMEFEIDMPDYFKNVLKY 305 Query: 234 FG 235 Sbjct: 306 LE 307 >UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Gammaproteobacteria RepID=RLUD_BLOFL Length = 321 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 26/246 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD----QIGQHVFTAHRLDRPT 57 L I+Y+D ++ +NK S +VH V+ R +I + RLD+ T Sbjct: 86 LNIIYEDNDILVINKASNMVVHPGIGHYQGTVLNALLYRYPSILKISKQAGIVQRLDKDT 145 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFA 116 +G++++ + A L + F+ ++ K Y AIV G V++ P+ K F Sbjct: 146 TGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYGKFTSNAGVVNQPMRRHFAK--RTFM 203 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 + AVT+Y + + + V + KTGR HQ+R H+A++ HP++ Sbjct: 204 SVHYTGKSAVTYYSVVEEFKA-----------HSRVRINLKTGRTHQIRVHMAYINHPLV 252 Query: 177 GDSKH-GDLR-------QNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 GD K+ G+ + R LHA L L HP T + +A L + Sbjct: 253 GDQKYKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLHPITQVQMKWNAPLPQDIL 312 Query: 229 QALSQF 234 Q ++ Sbjct: 313 QLIAIL 318 >UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G2_9PROT Length = 325 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 26/239 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG----QHVFTAHRLDR 55 L+IL++DE L+ +NKP+G +VH S +V ++ + G + HRLD+ Sbjct: 88 LDILFEDEHLIVLNKPAGIVVHPSHGHDHGTLVHALLHHCKTLPGINGVERPGIVHRLDK 147 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG L++ S + L++ F +H + ++Y A RG ++ P+ K Sbjct: 148 DTSGSLVIAKSEVVHQRLSEMFAEHNLNRQYIAWCRGVPSWRVKCIELPIGRHP-HQRQK 206 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A D G + ++T A + + + L TGR HQ+R H+AH P Sbjct: 207 MAVTDSG-RESITD-----------AAVEHIFGPFSQMRLTLHTGRTHQIRVHMAHENLP 254 Query: 175 IIGDSKH------GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 ++GD + G + L R LHA L HP +GEP++ A L + Sbjct: 255 VLGDPVYARSYHPGREIPEPARHAIATLSRQALHAELLEFDHPISGEPMSFRAPLPEDL 313 >UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales RepID=B7BE87_9PORP Length = 551 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 106/230 (46%), Gaps = 23/230 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEI+Y+DE L+ VNKP+G L D D ++ + HRLD TSG++ Sbjct: 337 LEIVYEDESLLVVNKPAGMLSVPGKSDVDSVYQRVRRMYPG-ATGPMVVHRLDMATSGLM 395 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDK 120 L+ + E + L QF+ + KRY A + G + E E L+ PL + + + Sbjct: 396 LVAKTKEVHQNLQAQFKNRTVCKRYVAWLDGIVEEKEGHLELPLRPDPEDRPRQVVDVVH 455 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH---LRHPIIG 177 G +PAVT YR L P +V PKTGR HQLR H AH L PI+G Sbjct: 456 G-KPAVTDYRVLRYGGCKGGLRTTP----TVVSFVPKTGRTHQLRVHSAHPLGLNAPIVG 510 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTI--HAGLDD 225 D +G RL LHA L THP +G + + AG DD Sbjct: 511 DELYGKK-----------ADRLYLHAEYLGFTHPVSGVYMEVEKEAGFDD 549 >UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whipplei RepID=Q83G23_TROWT Length = 303 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 20/238 (8%) Query: 1 MLEILYQDEWLVAVNKPSGWLVH--RSWLDRDEKVVVMQTVRD-QIGQHVFTAHRLDRPT 57 +L ++Y D+ L ++KP+G H W + + HRLD T Sbjct: 75 LLRVIYSDDDLFVIDKPAGVAAHASPGWCGPTVTGCLSGLLAACGPQDRQGIVHRLDANT 134 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFA 116 SG++++ S A L F I KRY A+V+G+ V++ P+ +L K D+F Sbjct: 135 SGLMVLAKSDLAYHNLKAAFRDRAIHKRYKALVQGYPDPSSGVINAPIGRDL-KHRDRF- 192 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 D + AVT Y + L+ + PKTGR HQ+R H + LRHP++ Sbjct: 193 CIDYSGRDAVTQYSTEEVY-----------PGFTLLSVAPKTGRTHQIRVHFSALRHPLV 241 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD K+G + ++ L+R LHA LS THP +G + + + + ++L Sbjct: 242 GDVKYG---ADPVFSQKVNLKRQWLHAYHLSFTHPVSGVFVEFESRIHEDLQESLRIL 296 >UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK65_RHOM4 Length = 235 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 25/235 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRD-EKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 L ILY+D+ L+AV+KP G +RD + + + G+ ++ HRLD+ SGV Sbjct: 3 LPILYEDDDLLAVHKPEGLAAIP---ERDPSRPSARRLLEAARGERLWVVHRLDKEASGV 59 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFARED 119 LL ++EA R + FEQ Q++K Y A+V G L + + P+ + + + Sbjct: 60 LLFARNAEAHRYMNTLFEQRQVRKVYRALVHGRLEPGQGQIRAPIR---MYGSGRMGVDP 116 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 + +P+ T YR L Y Y L+E P TGR+HQ+R H H+ HPI+GD Sbjct: 117 ERGKPSETRYRVLE----------YLDEAYSLIEALPLTGRRHQIRVHCYHIGHPIVGDP 166 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD + RLMLHA + HP G+ L I A + +++ Q L Sbjct: 167 RYGDRSVQQR------YPRLMLHALSIRFRHP-NGQELEIVAPVPESFQQVLDAL 214 >UniRef50_A1WTN6 Pseudouridine synthase n=2 Tax=Ectothiorhodospiraceae RepID=A1WTN6_HALHL Length = 249 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 108/245 (44%), Positives = 145/245 (59%), Gaps = 10/245 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH-VFTAHRLDRPTSGV 60 L ILY+DE L+AV KP+G LVHRS +DRD + VV+Q +RDQ+G H V+ HRLDR T+GV Sbjct: 11 LAILYRDERLIAVYKPAGLLVHRSNIDRD-RDVVLQRLRDQLGGHWVYPVHRLDRATAGV 69 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L+ GL +A +LA F + +I KRY A+VRGW+ +D PL Sbjct: 70 LVFGLDPDAASVLAAAFREQRIGKRYQAVVRGWVEAPGRIDRPLGAGRRGEGGA------ 123 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQPAVT Y LA E+P+ RY T R+ + L P+TGR+HQLRRH+ + HPI+GD+ Sbjct: 124 -PQPAVTDYVPLAWTELPIPVSRYDTARFTRLALHPQTGRQHQLRRHMKAISHPILGDTT 182 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW-RGL 239 HGD NR EHFG +RL+L A++L + HP G + + D + G Sbjct: 183 HGDGANNRFFREHFGARRLLLVATELVVPHPADGGAVRLATEPDAELQAIFRRAGLGEAP 242 Query: 240 LPENE 244 P +E Sbjct: 243 SPADE 247 >UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M2K8_BACS4 Length = 298 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 112/237 (47%), Gaps = 25/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L I+++DE ++ +NKP + + + + ++ + + I RLDR TS Sbjct: 83 LHIIFEDEHVIIINKPPHLPTIPTRNEGEPSLAGAILAYYIENGIPSTFHAVSRLDRDTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G++++ L + + ++I++ Y A+V G L ++ +D P+ + I ++ Sbjct: 143 GLVMVAKHRYMHDLCVKLQKSYEIKRSYVALVEGILSDDYNTIDLPISRKTTSIIEREV- 201 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 ++ + A+THY L + L++L +TGR HQ+R H++ + HP++G Sbjct: 202 -NEFGKSAITHYEVLKRY-----------SGATLLQLTLETGRTHQIRVHMSAIGHPLLG 249 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D+ +G + + R LH+ QLS HP T H + D A+S+F Sbjct: 250 DTLYGG--------DVRYIDRQALHSHQLSFFHPINKREYTFHCPIPDDIEDAMSKF 298 >UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2W5F3_BACCE Length = 307 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 23/237 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 LE++++D+ ++ VNKP+ H S + V + V HRLD+ T+ Sbjct: 85 LEVIFEDDHVLIVNKPAHMDTHPSNKGGTGTLANLVAFHLQMQGVETKVRHIHRLDKDTT 144 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G ++ AG ++ + + I++ Y A+V G + ++ ++D + + + R Sbjct: 145 GGVVFAKHGIAGVIMDRLLMERNIKRTYLALVEGKVRKKQGIIDEAIGRDRHHATRR--R 202 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + AVTHY+ + LV L+ +TGR HQ+R H++H HP+IG Sbjct: 203 VSQKGDRAVTHYKIEKY---------FKKQDVTLVTLQLETGRTHQIRVHMSHSGHPLIG 253 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D +G + + LHA ++ HP T E +T+ A L + + F Sbjct: 254 DVLYGG--------QATYMPYQALHAMRIHFLHPITKEEITVEAPLPNNLNNIIESF 302 >UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB48_PLALI Length = 325 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 120/254 (47%), Gaps = 30/254 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-VMQTVRDQIG-----QHVFTAHRLDR 55 LEIL++D+ L+ +NKP+G + H + D ++ +Q D+ + HRLDR Sbjct: 82 LEILFEDDSLLVINKPAGLIAHPTGEIPDGTLINAVQHYLDKQSTHPGLERPGIVHRLDR 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADK 114 TSG + + + RLL+ QF+ +I K Y A+V G L ++ V+D P+ + Sbjct: 142 DTSGAMAICKEHLSHRLLSIQFQLGRISKSYLALVEGVLTDDQLVIDLPIGRAPGCSSAL 201 Query: 115 FAREDKG--PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + Q + T R + ++ LVE +P+TGR HQ+R HLA + Sbjct: 202 MSCRADALEAQASKTSLRVVERF-----------PQHTLVEAKPRTGRMHQIRIHLATIG 250 Query: 173 HPIIGDSKH---GDLR-----QNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 PI+GD + G++R ++ + R LHA+ LS HP T E A L Sbjct: 251 FPIVGDEFYLKGGEIRPLVWPESERVQVSLLINRQALHAACLSFAHPLTNEWQDFQAPLP 310 Query: 225 DTWMQA--LSQFGW 236 D QA L++ G Sbjct: 311 DDLRQAIELARLGQ 324 >UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales RepID=B1XXM0_LEPCP Length = 369 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 19/229 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV---MQTVRDQIGQHVFTAHRLDRPTS 58 L ++++D L+ ++KP+G +VH + ++ HRLD+ TS Sbjct: 119 LAVVHEDAHLLVIDKPAGLVVHPAAGHWSGTLLNGLLAHHAAAAHLPRAGIVHRLDKDTS 178 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G++L+ S +A L + +++ Y A+V G +M+ V+D PL + Sbjct: 179 GLMLVAKSLQAHTALVRAIAARDVKREYLALVHGAVMDGLQVIDAPLGRDPVSRVRMAIV 238 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGR------YPTTRYGLVELEPKTGRKHQLRRHLAHL 171 +PA T R LA E+P R + V + TGR HQ+R HLA Sbjct: 239 --ASGKPARTDVRRLAVAELPGDGVRQLPGATRAPRQVSAVHCQLHTGRTHQIRVHLASR 296 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH 220 HP++ D+ +G GA FGLQR LHA++L L HP G PL Sbjct: 297 GHPLLADAMYG-------GAPAFGLQRQALHAARLHLLHPIDGRPLAFE 338 >UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RLUD_BUCBP Length = 317 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 22/244 (9%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPT 57 L ++Y+D+ ++ +NK ++VH + ++ RD HRLD+ T Sbjct: 84 FLNVIYEDDDILVINKQDNFVVHPGAGNTSGTLLNALLHRDSTFFNIPRAGIVHRLDKDT 143 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAR 117 +G++++ ++ + L Q + ++ + Y AIV G ++ + ++ K Sbjct: 144 TGLMVIAKNNLSYMALIDQIKCKKVIREYQAIVYGKVISGGTIVKSIIRNPIKRTTMIV- 202 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 +K + A+THYR L T + +++ +TGR HQ+R H+ ++ P++G Sbjct: 203 -NKCGKRAITHYRILKRF-----------THHTHLKIILETGRTHQIRTHMLYINFPLVG 250 Query: 178 DSKHGDLRQNRSGAEHFGL------QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 D +G+ + L R LHAS+L L HP T + ++ L + + Sbjct: 251 DKTYGNKFKFYKNISLTLLEQVKKFPRQALHASRLCLYHPVTKHLMEWNSTLPRDMLNLI 310 Query: 232 SQFG 235 + Sbjct: 311 ALLN 314 >UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID=Q8ERS8_OCEIH Length = 322 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 24/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAH---RLDRPTS 58 L+I+Y+D + + VNKP+G S R + T Q T H RLD TS Sbjct: 103 LDIIYEDAYCLVVNKPAGQACLPSMNHRHNTLANGLTYYYQKNSIPSTVHIVTRLDVNTS 162 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G++L+ + L ++ ++ I + Y AIV G + ++D P+ + I ++ Sbjct: 163 GLVLVAKNQYVHSLFSRMQQEGNINRVYEAIVHGEVSPTSGIVDAPIARKEGSIIERTVD 222 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + + A T+YR L Y + VE++ +TGR HQ+R H +L H + G Sbjct: 223 M-RNGKYAKTNYRVL-----------YADSIASWVEIKLETGRTHQIRVHFQYLGHSLYG 270 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D+ +G + + R LH Q+++ HP +P+ + A L + L + Sbjct: 271 DNLYGGSKD--------IMLRQALHCKQITMMHPIKNQPIQLEASLPEDMGILLKRL 319 >UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGX8_BDEBA Length = 319 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 110/261 (42%), Gaps = 37/261 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR------DQIGQHVFTAHRLDR 55 L++L++DE L+ +NKP+G +VH + + +V + HRLD+ Sbjct: 69 LDVLFEDEDLIVINKPAGLVVHPAAGHAHDTLVNALIHHTDDLSMKFGEERPGIVHRLDK 128 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADK 114 TSG++++ + +A L QF++ + Y+A+ G + L Sbjct: 129 ETSGIIVIAKNDKAHESLTSQFKERSTHRIYYAVCLGTARTLSGSVRSFLARHPVDRKRY 188 Query: 115 FAREDKGPQP-------------AVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRK 161 + +P AVTH+ L + ++L+ +TGR Sbjct: 189 ASVLGDDRKPLTDPNDDPGLGKWAVTHFEVLQR-----------KSGMSYLKLKLETGRT 237 Query: 162 HQLRRHLAHLRHPIIGDSKHGDLRQNRS------GAEHFGLQRLMLHASQLSLTHPFTGE 215 HQ+R H++ PI GD+ +G R+ +S + L R +LHA++L THP T E Sbjct: 238 HQIRVHMSESGLPIAGDTLYGADRKIKSIEARATQEDLRTLPRFLLHAAELGFTHPRTKE 297 Query: 216 PLTIHAGLDDTWMQALSQFGW 236 + + + + ++G Sbjct: 298 RMFFTKDWPEDVLVLIKKWGL 318 >UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q2RQY9_RHORT Length = 330 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 15/234 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 IL++D L+ +NK +G V +++++ D G+ HRLD+ TSGVL++ Sbjct: 96 ILHEDAHLIVINKEAGLAVQGGTGTPHHLDGMLESLADG-GETPRLVHRLDKDTSGVLVL 154 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDKGP 122 + A R L F + K Y AIV G + + L + ++ ++ Sbjct: 155 ARTQAAARALTSAFRSREALKVYWAIVVGRPPMLQGTIKGALAKVAGGRGERMEINEEEG 214 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + AVT +R + VEL P+TGR HQLR H + PI+GD K+G Sbjct: 215 KRAVTDFRVVDQAAKAC----------AWVELHPRTGRTHQLRVHCLEMGTPILGDGKYG 264 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 G E +R+ LHA L+L HP G L I A ++++L G+ Sbjct: 265 GPGAFLEGTELP--KRMHLHARALALPHPAGG-VLEIIAPPPPHFVESLKTLGF 315 >UniRef50_Q21K97 Pseudouridine synthase n=10 Tax=Gammaproteobacteria RepID=Q21K97_SACD2 Length = 321 Score = 239 bits (612), Expect = 5e-62, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 15/225 (6%) Query: 12 VAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGR 71 + VNKP+G VH + ++ Q ++ HRLDR TSG +L+ R Sbjct: 99 LVVNKPAGLAVHGGSGVTLGLIEALRQAFPQYS-YLELVHRLDRDTSGCILVAKKRSMLR 157 Query: 72 LLAQQFE-QHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHY 129 L + F + +I KRY A+V G W ++D PL+ + + ++ R +P+ T + Sbjct: 158 YLQELFRGEKRIHKRYLALVIGRWPSRRNLVDAPLLRKELQSGERIVRVSLDGKPSKTEF 217 Query: 130 RGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRS 189 + LVE P TGR HQ+R H H HP++GD K+G+ + S Sbjct: 218 NVVQRF----------GESATLVEARPITGRTHQIRVHAQHQGHPLVGDPKYGNEVFDLS 267 Query: 190 GAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + G+ RL LHA+ LS + GE + I L ++ F Sbjct: 268 -VKKLGVNRLFLHAAGLSFKN-ADGEQVNIEVPLPAELQSVVAAF 310 >UniRef50_C5WJF2 Pseudouridine synthase n=104 Tax=Lactobacillales RepID=C5WJF2_STRDG Length = 341 Score = 239 bits (612), Expect = 5e-62, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 107/238 (44%), Gaps = 24/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 ++ LY+D+ L+ VNKP G H + ++ ++ V G+ + HRLD TSGV+ Sbjct: 127 VDCLYEDDHLIIVNKPEGMKTH---GNEPTELALLNHVSAYTGRTCYVVHRLDMETSGVI 183 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVL-DYPLVEELDKIADKFAREDK 120 + + +L + E+ +I + Y A+V G L + V P+ + + Sbjct: 184 VFAKTPFILPILNRLLEKREISRDYWALVHGTLSSKEVSYREPIGRHRHDRRKRVVDVKQ 243 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 G Q AVT + L + + L+ +TGR HQ+R HL+H H ++GD Sbjct: 244 G-QKAVTDVKLLKSFK----------QNVSLINCRLQTGRTHQIRVHLSHHGHALLGDPL 292 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 + + RLMLHA QL L HP T E + + A T+ L Q +G Sbjct: 293 YSKGKAE--------CPRLMLHAHQLRLRHPLTQEMICVQAK-STTFETVLQQVKAKG 341 >UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1I1_DESRM Length = 303 Score = 239 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 25/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L I+ +DE + VNK G VH + + +V + + +R+DR TS Sbjct: 83 LSIISEDEDIALVNKQPGMCVHPTLAYPSGTLANGLVYHWLENNPAPTFHAVNRIDRNTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G++L+ +S + + L Q ++ Q+ + Y A+V G +++ +D PL + K + + Sbjct: 143 GLVLVAKNSYSAQKLFLQRKRKQLARSYVALVHGKIVQRNGYIDLPLEKCEGKTTKR--Q 200 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 Q A+T + L + T L+ L P+TGR HQ+R HL+HL HP++G Sbjct: 201 ISSTGQQALTRFEVLQYI-----------TDCTLIRLMPETGRTHQIRVHLSHLGHPLVG 249 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 D+ +G + R LHA ++S HP TG P++ L + +Q +++ G Sbjct: 250 DTLYGGSIAQ--------IGRHCLHADKISFLHPRTGHPMSFQIPLAEDMLQVITEMG 299 >UniRef50_A5VJ18 Pseudouridine synthase, RluA family n=13 Tax=Lactobacillus RepID=A5VJ18_LACRD Length = 301 Score = 239 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 27/239 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV-----MQTVRDQIGQHVFTAHRLDRP 56 ++I+Y+D+ + +NKP+G + +V ++ Q A RLDR Sbjct: 78 IDIIYEDQDFLIMNKPAGVATVPAHNVPVADSLVNRVKGYYKRQNYENQVTHVATRLDRD 137 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKF 115 TSG+++ A +L +Q ++H ++K Y A+++G + E +D P+ + + + Sbjct: 138 TSGLVVFPKHRFAHAVLDEQLKKHLVKKNYLALIKGKVPAEHGYIDAPIQRDPNSFVKRM 197 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 K + +VT Y + L+++ TGR HQ+R H A L P+ Sbjct: 198 V--GKEGKASVTEYWRQEC-----------NVQASLIKIRLHTGRTHQIRVHFASLGFPL 244 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 IGD +G E + R LH LS PF G+ +T+ A L + A Sbjct: 245 IGDKMYG--------EESGLIARQALHCYWLSFYSPFKGKNITVSAPLPSDFKNAKDDL 295 >UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S119_FINM2 Length = 307 Score = 239 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 25/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV------FTAHRLDR 55 L+++Y+D++L +NK +VH + + +V + V HRLD+ Sbjct: 77 LDVVYEDDYLAIINKDKDVIVHPTETIYSDTLVNYLMYNFKNLSDVDGDYRRGIVHRLDK 136 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 T+G++++ ++ L + + H+I K Y IV G + E + + Sbjct: 137 DTTGLIIIAKDNDTHLKLKEIIKNHEIIKTYLCIVHGKIDESGTIKEYMTRNPKDRKKMM 196 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 ++ + +++ Y L Y LV+++ KTGR HQ+R H+ ++ HPI Sbjct: 197 VSDE--GKLSISQYERLDY-----------NDDYSLVKVQIKTGRTHQIRVHMNYIHHPI 243 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 +GD +G + E +LHA L HP T E + + L +M A+ + Sbjct: 244 LGDKLYGLKK------EKILFDSQVLHAYNLQFIHPQTHEKINVIGKLKPDFMTAIEK 295 >UniRef50_A5ZQM9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZQM9_9FIRM Length = 334 Score = 239 bits (611), Expect = 6e-62, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 115/253 (45%), Gaps = 39/253 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L ILY+DE ++AVNKP+G L H + + + + V + + RLD+ TS Sbjct: 86 LCILYEDEDILAVNKPAGVLTHPAGMHYSDSLANQVAAYFQERNLSVCIRPIGRLDKETS 145 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-----VLDYPLVEELDKIAD 113 G++L + A + L +Q E ++K+Y A+V G L ++ +D+P+ + + Sbjct: 146 GIVLFAKNQVAAQRLQEQRETGVLEKQYLALVDGNLPKDQDDIWHTIDFPIKKIGNHPLR 205 Query: 114 KFAREDKGPQP-----------------AVTHYRGLATVEMPVATGRYPTTRYGLVELEP 156 A + AVTHY L Y T ++ ++L+ Sbjct: 206 MEAVKKSSSAENEKYIAHQLTDYINCFQAVTHYHVL-----------YSTDKWSAIKLKL 254 Query: 157 KTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEP 216 TGR HQ+R H+ + HP++GDS + NR E + R LHA ++ L PF G Sbjct: 255 DTGRTHQIRVHMQAIGHPLLGDSIYNTSTMNR---EQCTIYRAALHAWKVRLRQPFNGRK 311 Query: 217 LTIHAGLDDTWMQ 229 + + + + + + Sbjct: 312 IELEVPVPEDFKK 324 >UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHV8_9CLOT Length = 299 Score = 239 bits (611), Expect = 6e-62, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 24/236 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH---VFTAHRLDRPTS 58 +I Y+D+ L+ VNKP+G VH S ++ + + + +RLDR TS Sbjct: 80 FDIAYEDDDLLLVNKPAGTPVHPSPGHYEDSLANYSAWQYAQRREQLVFRPVNRLDRGTS 139 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G+L + ++ A L+QQ ++ Y+A+V G +D P+ + + R Sbjct: 140 GLLCVAKNAHAQARLSQQLHTGAFERIYYAVVCGAPSPAAGTIDLPIGRTPGSVLKR--R 197 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D AVTHY + Y L+++ +TGR HQ+R H AHL P+ G Sbjct: 198 VDPQGARAVTHYETVRV-----------NGAYTLLKIRLETGRTHQIRVHFAHLGCPLFG 246 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 D +G R++ ++ LH+ ++ L HP +GE + L + Sbjct: 247 DFLYGTERRDV-------VEGHALHSGEIRLLHPISGEEIRCSVPLPAYMENLMDN 295 >UniRef50_D1W0M0 Pseudouridine synthase n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1W0M0_9BACT Length = 566 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 113/236 (47%), Gaps = 32/236 (13%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ--HVFTAHRLDRPTSG 59 L ++Y+D+ L+ V+KP+G L R ++ V +R Q+ +F+ HRLD TSG Sbjct: 351 LHVVYEDDALIVVDKPAGILSVPG---RSQRPSVYSILRSQMPSSVELFSVHRLDMATSG 407 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFARE 118 +L++ +S R L +QF H IQK Y AI+ G L + E V+ PL + + Sbjct: 408 LLILAKNSVVYRHLQRQFRTHHIQKEYIAILEGALSQREGVVTLPLRPDPFDRPRQVVDW 467 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH---LRHPI 175 + G + AVT YR L V L P+TGR HQLR H AH L PI Sbjct: 468 EHGKK-AVTSYRVL-----------NVRHGKTWVALFPETGRTHQLRMHCAHAEGLNCPI 515 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +GD +G RL LHA+ ++ HP +G+ LT+HA + Sbjct: 516 LGDPLYG-----------HHANRLYLHATSITFEHPISGQLLTLHAQPPADFQDVF 560 >UniRef50_B0TDX6 Pseudouridine synthase, rlua family n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDX6_HELMI Length = 339 Score = 239 bits (610), Expect = 9e-62, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 116/255 (45%), Gaps = 19/255 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-----HVFTAHRLDRP 56 L++LY+D L+ ++KP G VH + + V + V HRLD+ Sbjct: 83 LKVLYEDADLLILDKPPGIEVHPPEQRARFRPTLAHGVAHYFAEKGIKARVRPLHRLDKD 142 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKF 115 T+G+ + ++ A + L +Q +Q+ Y AI+RG E V+D P+ + + + Sbjct: 143 TTGICVFAKNAFAHQALDRQLRNGSLQRGYLAILRGLPAELVGVIDAPIGRDPEHHMRRM 202 Query: 116 AREDKGPQPAVTHYR---GLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 R+D + A+T YR + + + + L E+ +TGR HQ+R H HL Sbjct: 203 VRDD--GERAITRYRVTQVIEPSGLEMKGAAESEGHWALAEVILETGRTHQIRVHFRHLG 260 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 P++GD +G + + R LH++ ++L P +GE + + A L + + L Sbjct: 261 TPLLGDRLYGG--------DSPRIDRQALHSAWVTLLQPRSGEAVKVTAELPEDMARLLG 312 Query: 233 QFGWRGLLPENERVE 247 G E+ + E Sbjct: 313 GKANDGSKNEDRKTE 327 >UniRef50_Q0BUM2 Pseudouridine synthase n=12 Tax=Acetobacteraceae RepID=Q0BUM2_GRABC Length = 366 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 83/264 (31%), Positives = 121/264 (45%), Gaps = 32/264 (12%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D+ L+ +NKPSG ++ +R HRLDR TSGV+++ Sbjct: 125 ILYKDDHLIVLNKPSGLPSQGGPGITRHLDGLLDGLRFGRDDRPRLVHRLDRDTSGVIVI 184 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKF--AREDK 120 S LA F + +K Y A+V G + E +D PL+ + D+ R+D+ Sbjct: 185 ARSPGVAAKLAALFRTRETEKVYWAVVAGRPVPVEGRIDRPLLRQNDRNEPVVLADRKDR 244 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 A+T YR L + + +EL P TGR HQLR H A + PI+GD + Sbjct: 245 DKVTAITDYRTLD----------HAARKLAWLELRPLTGRMHQLRVHCAAMDAPILGDER 294 Query: 181 HG-----DLRQNRSGAEHFGL-QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +G D R R+ A GL +RL LHA +LSL HP G L++ A L + Sbjct: 295 YGSWRNTDERGVRNTALVEGLSRRLHLHARRLSLPHPAGG-MLSVEADLSPHMAETFETL 353 Query: 235 GWRGLLPENERVEFSAPSGQDGEI 258 G F+AP ++G + Sbjct: 354 G------------FTAPKAREGRL 365 >UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochmannia RepID=Q492Q1_BLOPB Length = 338 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 17/243 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+Y+D++L+A+NKP+G H + + ++ +R + Q + HRLDR TSGVLL+ Sbjct: 94 IIYEDDYLLALNKPTGVAAHGGSGLKFGVIEGLRALRPK-AQFLELVHRLDRETSGVLLV 152 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAR--EDK 120 A L +Q ++K Y A+V G W + ++ PL ++ + + + Sbjct: 153 AKRRTALVYLHEQLRLQNMKKEYLALVHGRWNVNLQIVSVPLFKKNTLLNSSRVVYIDSE 212 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 + + TH++ + + ++P TGR HQ+R H + HPI+GD++ Sbjct: 213 NGKFSTTHFQIKEYFDNV----------ATFLAIKPITGRTHQIRVHTQYASHPIVGDNR 262 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 +GD + N + FG RL LHAS L HP T + IHA L ++ L F R L Sbjct: 263 YGDYQSNTRF-KRFGFNRLFLHASILRFIHPKTKKKFHIHAPLGQSFHNCL--FFLRNLS 319 Query: 241 PEN 243 +N Sbjct: 320 IKN 322 >UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A n=205 Tax=Proteobacteria RepID=RLUA_ECOLI Length = 219 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 110/224 (49%), Gaps = 20/224 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L ILYQD+ ++ VNKPSG L L+ + V+ + RD + HRLD TSGV+ Sbjct: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVI 71 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAREDK 120 ++ L+ A R L +QF + + +K+Y A V G E ++D PL+ + + + Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYET 131 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 G +PA T Y + Y V L+P TGR HQLR H+ L HPI+GD Sbjct: 132 G-KPAQTEYEVVE----------YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 + S RL+LHA L++THP G +T A D Sbjct: 181 Y------ASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 >UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 Length = 299 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 24/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-QHVFTAHRLDRPTSGV 60 LEI+++D+ L+ +NKPSG LVH + + ++ + + HRLD+ TSG+ Sbjct: 79 LEIVFEDQDLLVINKPSGMLVHPTSFQEQNT--LANALKHYLKTDDFYITHRLDKNTSGL 136 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA---VLDYPLVEELDKIADKFAR 117 +++ + +A L QQF Q ++K Y+AIV +++ P+ Sbjct: 137 IVICKNQKALCCLQQQFMQKTVKKSYYAIVHNRFDMHHLHFMINEPIGHSYQDKLRMKTG 196 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + K + A++ + + LVE+ TGR HQ+R H+ H+ HPI Sbjct: 197 DAKNVKEAISIVKVIEQY-----------QNTALVEVSIITGRTHQIRVHMRHINHPIYN 245 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D +G + LH+ +S HP T E + + + ++ + ++ Sbjct: 246 DPLYGISKHTTPYE-------QYLHSFYISFIHPSTNEIVEFKTLMPNEFINLIKEW 295 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 335 7e-91 UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 332 6e-90 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 331 2e-89 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 330 3e-89 UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D... 328 1e-88 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 328 1e-88 UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria Re... 326 4e-88 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 326 6e-88 UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D... 323 3e-87 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 323 4e-87 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 323 4e-87 UniRef50_Q47417 tRNA pseudouridine synthase C n=252 Tax=cellular... 323 5e-87 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 322 8e-87 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 322 9e-87 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 322 9e-87 UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepI... 319 4e-86 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 319 4e-86 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 319 7e-86 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 318 1e-85 UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 318 1e-85 UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D... 317 2e-85 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 317 2e-85 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 317 3e-85 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 316 3e-85 UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=... 316 6e-85 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 316 7e-85 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 315 7e-85 UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 315 9e-85 UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 313 3e-84 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 312 6e-84 UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 ... 312 8e-84 UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 312 9e-84 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 311 1e-83 UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium... 311 2e-83 UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacte... 310 2e-83 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 310 3e-83 UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 310 3e-83 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 309 6e-83 UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria R... 309 7e-83 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 309 7e-83 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 309 8e-83 UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turg... 308 1e-82 UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 308 1e-82 UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus sa... 307 2e-82 UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q... 307 2e-82 UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=... 307 2e-82 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 307 2e-82 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 307 2e-82 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 307 3e-82 UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 307 3e-82 UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae Rep... 307 3e-82 UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q... 306 7e-82 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 305 7e-82 UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae R... 305 8e-82 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 305 1e-81 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 305 1e-81 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 304 1e-81 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 304 1e-81 UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 304 1e-81 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 304 2e-81 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 304 2e-81 UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 304 3e-81 UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacte... 303 3e-81 UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desu... 303 3e-81 UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria R... 303 3e-81 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 303 5e-81 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 302 7e-81 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 302 9e-81 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 301 1e-80 UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 301 2e-80 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 301 2e-80 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 300 3e-80 UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus... 300 3e-80 UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 300 3e-80 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 300 3e-80 UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D... 300 3e-80 UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacte... 300 4e-80 UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID... 299 5e-80 UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibri... 298 1e-79 UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 298 1e-79 UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium R... 298 2e-79 UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium ca... 297 2e-79 UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=... 297 2e-79 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 297 3e-79 UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 296 4e-79 UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 296 5e-79 UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botul... 295 1e-78 UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nos... 295 1e-78 UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 295 1e-78 UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=... 294 1e-78 UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protoc... 294 2e-78 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 294 2e-78 UniRef50_Q8DBG5 tRNA pseudouridine synthase C n=54 Tax=Gammaprot... 294 3e-78 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 294 3e-78 UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D... 293 3e-78 UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacte... 293 4e-78 UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 292 5e-78 UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacter... 292 5e-78 UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4... 292 8e-78 UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D... 292 8e-78 UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desu... 292 8e-78 UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. S... 292 9e-78 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 292 1e-77 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 292 1e-77 UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=... 292 1e-77 UniRef50_B8CQ92 Pseudouridine synthase n=1 Tax=Shewanella piezot... 291 1e-77 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 291 2e-77 UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM... 291 2e-77 UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT ... 291 2e-77 UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ... 290 3e-77 UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter pi... 289 5e-77 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 289 6e-77 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 289 7e-77 UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 289 7e-77 UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii... 289 9e-77 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 289 9e-77 UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desu... 287 2e-76 UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio ace... 287 2e-76 UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 287 2e-76 UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepI... 287 2e-76 UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=... 287 2e-76 UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pire... 287 2e-76 UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales Re... 287 3e-76 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 287 3e-76 UniRef50_A3HSB5 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 287 3e-76 UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. ... 286 4e-76 UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q... 286 4e-76 UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Vict... 286 4e-76 UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=... 286 5e-76 UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus ole... 286 5e-76 UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta... 286 6e-76 UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 286 6e-76 UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 285 9e-76 UniRef50_Q30SZ1 Pseudouridine synthase n=2 Tax=Proteobacteria Re... 285 1e-75 UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobact... 285 1e-75 UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 284 2e-75 UniRef50_Q15QZ8 Pseudouridine synthase n=5 Tax=Bacteria RepID=Q1... 284 3e-75 UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus Rep... 284 3e-75 UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=... 283 4e-75 UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytop... 283 4e-75 UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=... 283 4e-75 UniRef50_C5TPY8 Pseudouridine synthase n=6 Tax=Proteobacteria Re... 282 5e-75 UniRef50_C4KBT4 Transaldolase n=2 Tax=Proteobacteria RepID=C4KBT... 282 5e-75 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 282 6e-75 UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepI... 282 6e-75 UniRef50_C0Q9S8 TruC n=1 Tax=Desulfobacterium autotrophicum HRM2... 282 7e-75 UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 282 7e-75 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 282 8e-75 UniRef50_A1K5H7 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 282 9e-75 UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjun... 282 1e-74 UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia R... 281 1e-74 UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=... 281 1e-74 UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibr... 281 1e-74 UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D... 281 2e-74 UniRef50_Q39Z12 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 281 2e-74 UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clos... 281 2e-74 UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermace... 281 2e-74 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 281 2e-74 UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capil... 280 3e-74 UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae R... 280 4e-74 UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO ... 280 4e-74 UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydr... 280 4e-74 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 280 4e-74 UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix o... 279 7e-74 UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 279 7e-74 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 279 8e-74 UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 278 1e-73 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 278 1e-73 UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 277 2e-73 UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID... 277 2e-73 UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C... 277 2e-73 UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Ther... 277 2e-73 UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacteriu... 277 2e-73 UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae... 277 2e-73 UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprof... 277 4e-73 UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeu... 276 4e-73 UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 276 7e-73 UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus Rep... 275 1e-72 UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Ta... 275 1e-72 UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID... 275 1e-72 UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 275 1e-72 UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D... 273 4e-72 UniRef50_Q31IZ8 Pseudouridine synthase n=2 Tax=Proteobacteria Re... 273 5e-72 UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C... 272 9e-72 UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gard... 271 1e-71 UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. M... 271 2e-71 UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID... 271 2e-71 UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. J... 271 2e-71 UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus meta... 270 3e-71 UniRef50_A6VXE8 Pseudouridine synthase n=2 Tax=Marinomonas RepID... 270 4e-71 UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 270 4e-71 UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium m... 269 5e-71 UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2... 269 6e-71 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 269 6e-71 UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C... 269 7e-71 UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C... 269 8e-71 UniRef50_A5VJ18 Pseudouridine synthase, RluA family n=13 Tax=Lac... 269 8e-71 UniRef50_A1U2H1 Pseudouridine synthase n=1 Tax=Marinobacter aqua... 269 9e-71 UniRef50_C8PZW5 Pseudouridine synthase n=1 Tax=Enhydrobacter aer... 269 9e-71 UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales Re... 268 1e-70 UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidi... 267 2e-70 UniRef50_UPI0001AEC02F pseudouridylate synthase, 23S RNA-specifi... 267 2e-70 UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae ... 267 3e-70 UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Baci... 267 3e-70 UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 267 3e-70 UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID... 267 3e-70 UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales R... 267 3e-70 UniRef50_D2QPA6 Pseudouridine synthase n=1 Tax=Spirosoma lingual... 266 4e-70 UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organi... 266 5e-70 UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 266 5e-70 UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula m... 266 6e-70 UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C... 266 6e-70 UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostri... 266 7e-70 UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 266 8e-70 UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=W... 266 8e-70 UniRef50_Q03EW7 Pseudouridine synthase n=1 Tax=Pediococcus pento... 265 1e-69 UniRef50_C6VVP1 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 265 1e-69 UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 265 1e-69 UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 265 1e-69 UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termit... 264 1e-69 UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepI... 264 1e-69 UniRef50_A9BZ16 Pseudouridine synthase n=9 Tax=Burkholderiales R... 264 1e-69 UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia... 264 1e-69 UniRef50_A7I2U9 Pseudouridine synthase n=23 Tax=Campylobacterale... 264 1e-69 UniRef50_C4ZAQ6 Pseudouridine synthase n=15 Tax=Clostridiales Re... 264 2e-69 UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Meth... 264 2e-69 UniRef50_B9DS29 Pseudouridine synthase n=85 Tax=Firmicutes RepID... 264 2e-69 UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whippl... 264 2e-69 UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clos... 264 2e-69 UniRef50_Q1WS43 Pseudouridine synthase n=3 Tax=Lactobacillus Rep... 264 2e-69 UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 264 2e-69 UniRef50_Q057H9 Pseudouridine synthase n=1 Tax=Buchnera aphidico... 264 3e-69 UniRef50_Q38W13 Pseudouridine synthase n=4 Tax=Lactobacillus Rep... 263 4e-69 UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae ... 263 4e-69 UniRef50_A4BJ00 Pseudouridine synthase n=1 Tax=Reinekea blandens... 263 5e-69 UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella el... 262 6e-69 UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Plan... 262 6e-69 UniRef50_B4RVP9 Pseudouridine synthase n=1 Tax=Alteromonas macle... 262 8e-69 UniRef50_A9GBV3 Pseudouridine synthase n=1 Tax=Sorangium cellulo... 262 9e-69 UniRef50_Q1N5G6 Pseudouridine synthase n=1 Tax=Bermanella marisr... 262 9e-69 UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine syn... 262 1e-68 UniRef50_B1YJB1 Pseudouridine synthase n=1 Tax=Exiguobacterium s... 262 1e-68 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 261 1e-68 UniRef50_B5JL25 Pseudouridine synthase n=1 Tax=Verrucomicrobiae ... 261 1e-68 UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales Rep... 261 1e-68 UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 261 2e-68 UniRef50_C9M5C8 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 261 2e-68 Sequences not found previously or not previously below threshold: UniRef50_Q5Z8P2 RNA pseudourine synthase 2, chloroplastic n=6 Ta... 272 7e-72 UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Ta... 272 1e-71 UniRef50_B6TXP4 RNA binding protein n=3 Tax=Poaceae RepID=B6TXP4... 271 2e-71 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 335 bits (861), Expect = 7e-91, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 25/241 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L+I+Y+DE LV VNK +G +VH + + D +V Q HRLD+ Sbjct: 82 LDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHCQNLSGIGGVLRPGIVHRLDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG+L++ + A + LA+Q ++ + + Y IV G+L +E ++D P+ Sbjct: 142 DTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLKNKEGIIDLPIGRHPRDRQKM 201 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A T Y+ L + L++ + TGR HQ+R H ++L HP Sbjct: 202 AVV--SNGKTAQTVYKVLEEF----------NKGFTLIQAKLLTGRTHQIRVHFSYLGHP 249 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD K+G FG++R MLHA +LS HP +GE L A L + + + L++ Sbjct: 250 VLGDPKYGHQ------NNPFGVKRQMLHAIKLSFIHPRSGELLEFTAPLPEDFQRVLAKL 303 Query: 235 G 235 Sbjct: 304 R 304 >UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFD0_LIBAP Length = 340 Score = 332 bits (853), Expect = 6e-90, Method: Composition-based stats. Identities = 61/257 (23%), Positives = 117/257 (45%), Gaps = 27/257 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L+ILY+D+ ++ +NKP+G +VH + + +V + HRLD Sbjct: 90 LDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLD 149 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQH----QIQKRYHAIVRGWL-MEEAVLDYPLVEELD 109 + T+GV+++ + A + L++QF H ++++ Y+A+V G + +++ PL Sbjct: 150 KDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKS 209 Query: 110 KIADKFAR--EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 + + +DK A+THY+ + L++ +TGR HQ+R H Sbjct: 210 NRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFA------VSLLKCHLETGRTHQIRVH 263 Query: 168 LAHLRHPIIGDSKHGDL-------RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH 220 +AH +P+IGD +G N + + L R LHA LS +HP + + Sbjct: 264 MAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQ 323 Query: 221 AGLDDTWMQALSQFGWR 237 + + + + + + Sbjct: 324 VPIPEDMLTVIRKLNEK 340 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 26/243 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L ++Y+D ++ +NKP G +VH + D +V HR+D+ Sbjct: 80 LNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVNGLLWHCHDLSGINGVLRPGIVHRIDK 139 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG+++ + A + LA+Q + ++Y+A+V G + E +D P+ + Sbjct: 140 DTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYALVHGVINHEYGTIDAPIGRDEKDRQKM 199 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 +K +PA+TH++ + + Y LV +TGR HQ+R H+ ++ P Sbjct: 200 AVT-EKNSRPAITHFKVVERFD-----------NYTLVSCRLETGRTHQIRVHMQYIGFP 247 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 I+GD K+ S + Q MLHA QLS THP TGE +T A L + L+Q Sbjct: 248 IVGDPKY-------SLRKTLPTQGQMLHAYQLSFTHPSTGERMTFEAPLPPEFEALLTQL 300 Query: 235 GWR 237 Sbjct: 301 RQE 303 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 27/253 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 LEI++QD + +NKP+G +VH + +V + HR+D+ Sbjct: 112 LEIIFQDADIAVINKPAGLVVHPAEGHWSGTLVNALLYHIKDLSGINGELRPGIVHRIDK 171 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 TSG+L++ + A L +Q + H++++ Y A+V G + E ++ P+ + Sbjct: 172 DTSGLLVVAKNDRAHIHLTEQVKDHRVRREYLAVVHGVIGAETGRVEAPIGRDPKDRQRM 231 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 G + A+TH+R LA P + L+ +TGR HQ+R HLAH+ HP Sbjct: 232 AVI--AGGKSAITHFRVLARY---------PEQGFSLLHCRLETGRTHQIRVHLAHIGHP 280 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + GD K+G + FGL LHA +L HP +GEP+ A + ++Q L Sbjct: 281 VAGDPKYGPRK------AAFGLTGQALHAWKLEFVHPRSGEPMRFQADPPEPFVQVLQAL 334 Query: 235 GWRGLLPENERVE 247 + P N+R + Sbjct: 335 Q---MTPTNQRDQ 344 >UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D n=39 Tax=Proteobacteria RepID=RLUD_NEIMA Length = 374 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 19/255 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+I+Y+D+ ++ VNKP+G +VH + + ++ HRLD+ TS Sbjct: 105 LDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQIPRAGIVHRLDKETS 164 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + A L Q ++ +++ Y A+ G + + ++ + + + Sbjct: 165 GLMVVAKTLPAQNSLVWQLQERTVKRIYRAVANGIVPFDGKIETQIGRDPHNRLKMAVVK 224 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 G +PAVTH + L + +E +TGR HQ+R H+ HP+ GD Sbjct: 225 -FGGKPAVTHVKVLERYLA-----------HSYIECSLETGRTHQIRVHMREANHPLAGD 272 Query: 179 SKHGDLRQNRSGAEHFGLQ----RLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +G+ R ++ R LHA +LS THP +GE ++ A + D LS Sbjct: 273 PVYGNPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPESGETVSFEAPIPDDIYHLLSVL 332 Query: 235 GWRGLLPENERVEFS 249 L + E Sbjct: 333 RLEAGLDSSLSNEEE 347 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 17/238 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+IL++D+ L+ ++KP+G +VH + ++ HRLD+ T+ Sbjct: 109 LKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQVPRAGIVHRLDKDTT 168 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+L++ + EA LA+Q +Q +++ Y A+V G L ++ V+D P+ Sbjct: 169 GLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKDGVVDAPIGRHPIHRTRMAVV- 227 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + +PA THYR L L+ +TGR HQ+R HL + HP+ GD Sbjct: 228 -QNGKPARTHYRVLEKFTAS-----------TLLHCSLETGRTHQIRVHLLSIGHPLAGD 275 Query: 179 SKHGDLRQNRSGAEH-FGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +G + S A+ L R LHA QL LTHP +G+ L + L D L Sbjct: 276 PVYGRTSPDPSTADAVVRLPRQALHAWQLELTHPHSGQILLWESPLPDDMAALLQAIR 333 >UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria RepID=Q312A0_DESDG Length = 578 Score = 326 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 113/269 (42%), Gaps = 25/269 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD-----QIGQHVFTAHRLDRP 56 LE+LY+D ++ +NKP+G VH + + +V Q G HR+D+ Sbjct: 119 LEVLYRDAHMLVINKPAGLTVHPAPSCPEGTLVHRLLHHFPELEAQEGFRPGIVHRIDKD 178 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKF 115 TSG+LL+ L+ +A L+ F +I K Y A+V+G + +D P+ Sbjct: 179 TSGLLLIALTEKARLALSDAFAGRRIHKEYLALVKGIPEGDSGEIDAPVGRHPTHKTRMA 238 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 +G + A++ +R L T + LV + TGR HQ+R H+ H HP+ Sbjct: 239 VV--RGGREALSTWRVL-----LADPHGGGGTGWTLVAVRIHTGRTHQIRVHMQHTGHPL 291 Query: 176 IGDSKHGDLRQNRSGAEHFGL----QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 GD+ +G + L R MLHA ++S HP TG P+ + + Sbjct: 292 WGDALYGGMPGREELQTTPALAQTATRQMLHAWKISFDHPVTGAPMQFTLPPPADFGTLI 351 Query: 232 SQFGWRGLLPENERVEFSAPSGQDGEISS 260 G R + +G G S Sbjct: 352 RDLG--------SRCQRVVITGMPGCGKS 372 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 326 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 109/242 (45%), Gaps = 24/242 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD-----QIGQHVFTAHRLDRP 56 L+++Y+D + +NKP+G +VH + +V R HRLDR Sbjct: 91 LDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPDLAIGGELRPGIVHRLDRD 150 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 TSG+L++ +A R L Q + +++K Y A+V G E +D P+ + Sbjct: 151 TSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRPPETGTIDAPIGRDPRDRLRMAV 210 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 D +PA THYR L T Y L+E++ +TGR HQ+R HL HL +PI+ Sbjct: 211 VPD--GRPARTHYRLLDTF-----------GDYSLLEVQLETGRTHQIRVHLRHLGYPIV 257 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD +G R H L R LHA+ L L HP +G A L L Q Sbjct: 258 GDPVYGPRRS------HLHLSRQFLHAAYLGLVHPRSGRWQEFTAPLPADLQIVLRQLQD 311 Query: 237 RG 238 R Sbjct: 312 RA 313 >UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D n=8 Tax=Sphingomonadales RepID=RLUD_ZYMMO Length = 317 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 19/241 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 LEI+++DE L+ VNKP+G +VH + + D +V HR+D Sbjct: 82 LEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIGGVARPGIVHRID 141 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADK 114 + TSG+L++ + A LA QF H I +RY AIV G + +D PL Sbjct: 142 KDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPSLQGHVDAPLARSSVNRQKM 201 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 D + AVTHYR + P L+E +TGR HQ+R H++ + H Sbjct: 202 AIVSDGRGKRAVTHYRMI-----------TPLKNASLIECRLETGRTHQVRVHMSSIGHS 250 Query: 175 IIGDSKHGD-LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 ++GD +G + + + + QR LHA+ L HP +G+ + A + Sbjct: 251 LLGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDAEMPQDMQLLFKM 310 Query: 234 F 234 Sbjct: 311 L 311 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 24/243 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 L+ILY+D ++ +NK G +VH + +V + HRLD+ Sbjct: 80 LDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYHCKDLSGINGEIRPGIVHRLDK 139 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSGV++ + A LA+Q + Y AIV G + EE V+ + Sbjct: 140 DTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCGNIREEAGVIKGDIGRHPTDRKKM 199 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + +PAVTH+R L Y LVE +TGR HQ+R H+A + HP Sbjct: 200 AIVHEH-GKPAVTHFRVLERF-----------GAYTLVECRLETGRTHQIRVHMASIGHP 247 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD K+G + A F ++ LH+ QL+LTHP T E +T A L + + L Sbjct: 248 VLGDPKYGPRK-----ACPFAIKGQALHSLQLTLTHPRTREVMTFTAPLPEDMEKILKAL 302 Query: 235 GWR 237 + Sbjct: 303 RAK 305 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 113/244 (46%), Gaps = 28/244 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 +EI+Y+D L +NK +G +VH + +V + HRLD+ Sbjct: 99 IEIIYEDNDLAVINKKAGIVVHPANGHYSGTLVNAILYHIKDLSGINGEIRPGIVHRLDK 158 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG+L++ + +A L+Q F ++K Y AI++G L + + + + + Sbjct: 159 DTSGLLIIAKNDKAHLKLSQMFHDKTVKKIYLAILKGKLNQKSGRIVTQIGRDKNDRKKM 218 Query: 115 FARED-KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 D + A+T+Y ++ E ++ LV++ +TGR HQ+R H+ HL + Sbjct: 219 TVINDLNSGKTAITNYEVISQTE-----------KFTLVKVHIETGRTHQIRVHMKHLGY 267 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GDS +G +R MLHA +L HP T E L A L + + +AL + Sbjct: 268 PILGDSVYGRTDTE---------KRQMLHAYKLEFQHPITEENLEFIAKLPEDFKKALKK 318 Query: 234 FGWR 237 G Sbjct: 319 CGLE 322 >UniRef50_Q47417 tRNA pseudouridine synthase C n=252 Tax=cellular organisms RepID=TRUC_PECCC Length = 376 Score = 323 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 182/257 (70%), Positives = 209/257 (81%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEI+YQDE LVAVNKPSGWLVHRSWLDR EKVVVMQTVRDQIGQHV+T HRLDRPTSGV Sbjct: 115 MLEIIYQDEHLVAVNKPSGWLVHRSWLDRKEKVVVMQTVRDQIGQHVYTVHRLDRPTSGV 174 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 LL+ LSSE R L+QQFE HQ+QK YHA+VRG+++++ V+DY L EELDKIADKF DK Sbjct: 175 LLLALSSEVARALSQQFESHQMQKTYHAVVRGYVLDDGVIDYALTEELDKIADKFTNPDK 234 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQPAVTHYR LA EMPVA GRYPT RY L+EL+P+TGRKHQLRRH++H+ HPIIGD+ Sbjct: 235 APQPAVTHYRSLAQAEMPVAIGRYPTARYSLMELKPQTGRKHQLRRHMSHIHHPIIGDTA 294 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 HGDLR NR HF RLMLHAS+L L HP +G+PLT+ A D W ++QFGW+G+L Sbjct: 295 HGDLRHNRGMESHFSCGRLMLHASELQLNHPVSGQPLTLQARWDAPWQGVVTQFGWKGIL 354 Query: 241 PENERVEFSAPSGQDGE 257 PE E VEF A SGQD E Sbjct: 355 PEFEGVEFPADSGQDSE 371 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 67/254 (26%), Positives = 115/254 (45%), Gaps = 25/254 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L+ILY+D+ ++ +NKP+G +VH + +V + HRLD Sbjct: 81 LDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGGVKRPGVVHRLD 140 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQH----QIQKRYHAIVRGWLMEEA-VLDYPLVEELD 109 + TSGV+++ + A + L+ QF H + +RYHA++ G +D L Sbjct: 141 KNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALDRRYHALIWGTPHRNVWTIDASLGRSPH 200 Query: 110 KIADKFARE--DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 + + AVTH+ L + + L+E +TGR HQ+R H Sbjct: 201 NRTKQAVVHKQTPHARHAVTHFSLLEKYGTHADSTSF----ASLLECRLETGRTHQIRVH 256 Query: 168 LAHLRHPIIGDSKHGDLRQNRSGAEHFGLQ-------RLMLHASQLSLTHPFTGEPLTIH 220 +AH+ HP+IGD+ +G+ + +S + L+ R LHA+ L+ HP +G+ ++ Sbjct: 257 MAHIGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQFNRHALHAASLTFEHPSSGKVISFS 316 Query: 221 AGLDDTWMQALSQF 234 A L Q + Sbjct: 317 APLPQDMAQLIKHL 330 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 322 bits (826), Expect = 9e-87, Method: Composition-based stats. Identities = 73/258 (28%), Positives = 111/258 (43%), Gaps = 23/258 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG------QHVFTAHRLDR 55 L+ILY+DE +V +NK SG +VH + + D +V + HRLD+ Sbjct: 77 LDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHCGDLSGIGGVERPGIVHRLDK 136 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADK 114 TSG L++ + A + L QF +KRY A+V+G + + + Sbjct: 137 DTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQGIPSQSSGTVFTHIGRHPVNRLKM 196 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A+T Y L P+T LV TGR HQ+R H+ +L HP Sbjct: 197 AVVNPGSGKAAITDYDLL---------CADPSTDSSLVLCTLHTGRTHQIRVHMLYLGHP 247 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +IGD + + ++ RLMLHA +L HP TG+ + A + + L F Sbjct: 248 LIGDPIYAKPARQKAKP-----GRLMLHAWRLGFDHPRTGKRMDFEAPVPPEYTPWLQLF 302 Query: 235 --GWRGLLPENERVEFSA 250 G G +PE V+ Sbjct: 303 PNGLYGAIPELRPVQEDG 320 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 322 bits (826), Expect = 9e-87, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 22/241 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-------HVFTAHRLD 54 L+ILY+DE ++ +NKP G +VH + +V + HR+D Sbjct: 99 LDILYEDEDVILINKPKGMVVHPAAGHYTGTLVNALMYHCRDNLSGINGELRPGIVHRID 158 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 T+GV++ + + R++A+Q ++H I+++Y AIV G EE ++ + Sbjct: 159 MDTTGVIIACKNDVSHRIIAEQLKEHSIKRKYQAIVYGVFKDEEGRIEGSIGRSKTDRKK 218 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 D +PAVTHYR + P + +E E +TGR HQ+R H+ + H Sbjct: 219 MAVIPD--GKPAVTHYRVIRNYTSP------NGNNFAHIECELETGRTHQIRVHMTSIGH 270 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++GD +G + F L LHA L HP TGE + HA L + + + L++ Sbjct: 271 PLLGDEIYGAAK------NPFKLDGQALHAEMLGFVHPRTGEYMEFHAPLPEYFSKLLTK 324 Query: 234 F 234 Sbjct: 325 L 325 >UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepID=A7NB61_FRATF Length = 332 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 106/238 (44%), Gaps = 16/238 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+I+++D+ ++ ++KP +VH + V R + HRLD+ TS Sbjct: 88 LKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKDTS 147 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+++ SS A L QQ + ++ ++Y AIV G + ++ ++ P+ + Sbjct: 148 GLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQQGTINQPIGRDPTNRTKMAINY 207 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + A+T+Y + + + L+E + +TGR HQ+R H+ ++HP++GD Sbjct: 208 --RGKEAITYYTPIEVYD-----------GFTLIECQLETGRTHQIRVHMKSIKHPLVGD 254 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 + R LHA +LS HP T + + + L + + +Q Sbjct: 255 QTYNKSSTKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDMLNLKAQLEQ 312 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 21/243 (8%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDRPTS 58 +Y+D+ L+ ++KP G +VH + + +V HRLD+ TS Sbjct: 98 IYEDDSLLVLSKPPGIVVHPGNGNTEGTLVHGLLYHCREIGGVGDAIRPGIVHRLDKDTS 157 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G +++ + R L F++ Q+ K YHA+V G + E + P+ Sbjct: 158 GAMVVAKDERSLRTLVDSFKERQVYKVYHALVCGIPKKYEGRIVAPIGRHSVHRQKMAI- 216 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 ++ + A T+++ + E Y L+ + +TGR HQ+R H++ + PI G Sbjct: 217 SERTGKFAATNWQVVEVFETK-------DGPYSLLRVHIETGRTHQIRVHMSSIGCPIAG 269 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 D +G RQN + A R MLHAS+L L HP TG ++ A L + + L W Sbjct: 270 DQVYGSKRQNPAFA------RQMLHASRLRLPHPVTGRTMSFTAPLWQDFQEVLEDMDWS 323 Query: 238 GLL 240 G L Sbjct: 324 GAL 326 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 113/241 (46%), Gaps = 22/241 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-------DQIGQHVFTAHRLD 54 L ILY+DE L+ +NKP+G +VH + + +V Q + HRLD Sbjct: 85 LNILYEDEELIVINKPAGLIVHPTPSIKTGTLVNALMHHVKDLDKTMQDPNRLGIVHRLD 144 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 + TSGVL++ ++ + LL+++F++ + K Y AIV G L E E ++ PL Sbjct: 145 KETSGVLVVAKNAFSHHLLSKEFKERKTMKYYLAIVEGTLKEKEGEINLPLGRHPILRHK 204 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + + A+T Y+ L LV + +TGR HQ+R H ++ + Sbjct: 205 RAVVY--NGKEAITEYKTLKEF----------GDLATLVWIRLRTGRTHQIRVHFKYIGN 252 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P+IGDS +G + ++ + R MLHA +L HP T E + A L D + L Sbjct: 253 PLIGDSLYGKNKIEKNL--QIPVGRQMLHALKLGFYHPKTKEWMEFLAPLPDDFKNLLIT 310 Query: 234 F 234 Sbjct: 311 L 311 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 25/245 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 LEILY+DE ++ VNK G +VH + + +V + HR+D+ Sbjct: 107 LEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLYHCRNLSGINGVLRPGIVHRIDK 166 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 TSG+L++ + A + LA+Q + H + +RY AIV G + ++ P+ + Sbjct: 167 DTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGTVEAPIGRDPADRKKM 226 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + AVTHY L + L+E +TGR HQ+R H+A+L+HP Sbjct: 227 AVVF-QNAKEAVTHYEVLERFR-----------DFTLLEARLETGRTHQIRVHMAYLKHP 274 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD +G + FGLQ MLHA L HP +GE + A + + L + Sbjct: 275 VLGDPLYGPRK------NPFGLQGQMLHAQLLGFQHPRSGEYMEFSAPASGMFQKVLEEI 328 Query: 235 GWRGL 239 L Sbjct: 329 RRDDL 333 >UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L0S2_9DELT Length = 558 Score = 318 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 113/269 (42%), Gaps = 28/269 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-----GQHVFTAHRLDRP 56 L +LY D+ L ++KP G VH + + +V G+ HRLD+ Sbjct: 91 LRVLYADKELAVLDKPPGLTVHPAPGLPEGTLVNRLLHHFPGLREMAGERPGIVHRLDKD 150 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKF 115 TSG+L++ L+ LA F Q+ K Y A+V G + + P+ + Sbjct: 151 TSGLLMVALTEPVRLALAADFAARQVHKTYLALVHGRPDGKGGDIRLPIGRDPKYRTKMA 210 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 KG +PA + +R + T P L+E+ TGR HQ+R H+A + HPI Sbjct: 211 V-PHKGGRPAHSRWRPVWT---------APDGTASLLEVTIFTGRTHQIRVHMAAIGHPI 260 Query: 176 IGDSKHGDLRQ----NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 IGD+ +G + R GA R MLHA +LS THP EP + + Sbjct: 261 IGDAVYGPHQHAAWKRRGGAIARLASRQMLHAWKLSFTHPVLKEPRSFTCPPPPDF---- 316 Query: 232 SQFGWRGLLPENERVEFSAPSGQDGEISS 260 WR LL R + G G S Sbjct: 317 ----WRLLLLLGRRCQRIGVVGMPGCGKS 341 >UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D n=94 Tax=Proteobacteria RepID=RLUD_RALSO Length = 358 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 15/244 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+++Y+D+ L+ +NKP+G +VH + + V+ R HRLD+ TS Sbjct: 116 LDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAAGLPRAGIVHRLDKETS 175 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + A L +Q + +++ Y A+V G E +D P+ + E Sbjct: 176 GLMVVARTLPAQTDLVRQLQARTVKRTYLALVWGETPEAGTIDAPIGRDPRDRTRMAIIE 235 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 +PA TH++ L V++ + LV+ + +TGR HQ+R H HP++GD Sbjct: 236 TASGKPARTHFKTLDVVDLG-------RAQVSLVQCQLETGRTHQIRVHFESEGHPLLGD 288 Query: 179 SKH-----GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 + Q R LHA +L L HP +G+ + HAG+ D + + Sbjct: 289 PVYTRNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASGQSVHWHAGVPDDLAELMDA 348 Query: 234 FGWR 237 Sbjct: 349 LEMD 352 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 69/279 (24%), Positives = 102/279 (36%), Gaps = 54/279 (19%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ---------------- 45 L+I+Y+D +L+ VNK +G +VH + +R +V G Sbjct: 86 LDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLYYIGSGPVRFDEEDDLPEDDEIG 145 Query: 46 ----------------HVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAI 89 HRLD+ T+G++++ LA+QFE I + Y AI Sbjct: 146 LSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAKDDVTHTGLARQFEHRTIARTYLAI 205 Query: 90 VRGWL-MEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTR 148 V G ++ + + D + AVTHY + + Sbjct: 206 VWGVPDPPRGRIEAAIGRDPRDRQRMAVVPDDRGKRAVTHYEVVEALPA----------- 254 Query: 149 YGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHF----------GLQR 198 LV + +TGR HQ+R H H+ HP++GD +G L R Sbjct: 255 AALVRFKLETGRTHQIRVHARHIGHPVLGDPTYGGRTIRYGPHTPRRRAFYDQLFARLTR 314 Query: 199 LMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 LHA L HP TGE L A L + AL Q Sbjct: 315 QALHAHTLGFRHPRTGEWLEFEAPLPEDMACALEQLRQD 353 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 112/240 (46%), Gaps = 18/240 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 L+I+Y+DE+L+ VNKP +VH + + +V Q + HRLD+ Sbjct: 91 LDIVYEDEYLLVVNKPRNMVVHPGAGNYRDTMVNALLYHCQNLSDGTSYERPGIVHRLDK 150 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 TSG+L++ +E +L+++ + ++ + Y A+V G ++A +D P+ + Sbjct: 151 DTSGLLVVAKQNETHDILSEEIKNRRVARTYLALVIGDFSKKKATIDLPIGRDPRNRKKM 210 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 G + A+T L + + P + ++ +TGR HQ+R HL+HL +P Sbjct: 211 AVV--HGGKRAITKVEMLRSFQNPE--------KISYLKCSLETGRTHQIRVHLSHLGYP 260 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD + + ++ L LH+ L+ THP + + A L M +S+ Sbjct: 261 LLGDPVY-RGKTGKNVDIDKNLTGQALHSFSLAFTHPVFKKTMVFRAPLPSDMMNLISKL 319 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 36/252 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------------------ 43 LEILY+DE L+ ++KP G +VH + +V Q Sbjct: 95 LEILYEDEDLIVISKPPGLVVHPAPGHSSGTLVNGLLFHFQSQGDEQKKGEPEEEEEAER 154 Query: 44 GQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDY 102 HRLD+ TSGV+++G + L QF+ + K+Y A+V+G L ++ ++ Sbjct: 155 PLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVSKKYLALVKGILPKKRGEINA 214 Query: 103 PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKH 162 P+ R+D +P+VT YR L T Y L+E+ TGR H Sbjct: 215 PIGRSTHDRKKFTVRQD--GKPSVTRYRVLETYHE----------NYSLLEVTLLTGRTH 262 Query: 163 QLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAG 222 Q+R H +L P++GD+ +G G E+ R MLHA +LS HP + + A Sbjct: 263 QIRVHFRYLGFPLLGDAVYGSK-----GTENKNFPRQMLHAWKLSFQHPSSNSKMEFEAP 317 Query: 223 LDDTWMQALSQF 234 L ++ AL + Sbjct: 318 LPPDFVSALERL 329 >UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=A1URK8_BARBK Length = 336 Score = 316 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 25/254 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L IL++D+ ++ VNKP+G +VH + +V + HRLD Sbjct: 80 LHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNALIYHCGDSLSGIGGVRRPGIVHRLD 139 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQH----QIQKRYHAIVRGWLMEE-AVLDYPLVEELD 109 + TSGV+++ + A + L+ QF H + +RYHA++ G V+ L Sbjct: 140 KNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLDRRYHALIWGSPNRNIGVITASLGRARY 199 Query: 110 KIADKFAREDKG--PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 + + AVTH+ + + + L+E +TGR HQ+R H Sbjct: 200 DRTKQAVIHSHNIYARHAVTHFSVIEKYQTCADKIPF----ASLLECRLETGRTHQIRVH 255 Query: 168 LAHLRHPIIGDSKHGDLRQNRSGAEHFGLQ-------RLMLHASQLSLTHPFTGEPLTIH 220 +AH+ HP++GD+ +G+ + +S ++ R LHA+ L+ HP G ++ Sbjct: 256 MAHIGHPLVGDTVYGNAFKTKSNRFDSTIKEAIDLFNRQALHAASLTFEHPAKGNIMSFS 315 Query: 221 AGLDDTWMQALSQF 234 A L + ++ F Sbjct: 316 APLPQDMAELINHF 329 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 316 bits (810), Expect = 7e-85, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 21/240 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L+I+Y+D ++ +NK G + H +V + Q HRLD+ Sbjct: 79 LDIIYEDRDILVINKQPGIITHPIPSHTSGTIVNGVLYHCKDLQGIGGVLRPGIVHRLDK 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSGV+++ + A + L +QF+ +K Y +V+G +E ++ + Sbjct: 139 DTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKGVPKRKEGDIEINIARNPVLRVKM 198 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + +PA+THY+ + LV PKTGR HQ+R H+ ++ HP Sbjct: 199 TVTNSEYGKPALTHYKVVREF----------GDIAALVFAYPKTGRTHQIRVHMKYIGHP 248 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD +G +++ E FG++R MLHA LS HP TGE + A + + +A+ + Sbjct: 249 LMGDEVYGRAKED----EIFGIKRQMLHALSLSFYHPRTGEKVKFIAKIPQDFKEAIQKL 304 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 110/246 (44%), Gaps = 23/246 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG------QHVFTAHRLDR 55 L ILY+D +VAVNKP G +VH + +V + Q HRLD+ Sbjct: 83 LAILYEDRDIVAVNKPPGMVVHPAPGHSSNTLVNALLAHCKDLSGIGGVQRPGIVHRLDK 142 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSGV+L + A L++Q Q +++K Y A+ G + E+ V+D PL Sbjct: 143 ETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLALAHGVIKEDTGVIDLPLARHPSDRKRM 202 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A++ + V+++ KTGR HQ+R HLA L HP Sbjct: 203 HVSTPAKGREALSLWTVKERFL-----------DATYVKVQIKTGRTHQIRVHLAALHHP 251 Query: 175 IIGDSKHGDLRQNRSGA-----EHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 +IGD+ +G ++ + +R MLHA +S THP TGE LT+ A L Q Sbjct: 252 VIGDTVYGGRKKRGRLPASVLGKAPPPERQMLHAHIVSFTHPVTGEKLTLTAPLPQDMAQ 311 Query: 230 ALSQFG 235 L Sbjct: 312 LLEALR 317 >UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=A3M2Y1_ACIBT Length = 350 Score = 315 bits (809), Expect = 9e-85, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 22/247 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+I+Y+DE ++ +NKP G +VH + +V HR+D+ TS Sbjct: 115 LDIVYEDEDILVINKPVGMVVHPGAGNTSSTLVNALLYHSPKSAELSRAGLVHRIDKDTS 174 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+L++ + EA L++Q + + Y + G ++ +D P+ Sbjct: 175 GLLVVAKNLEAQFSLSKQLGDKSVYRIYDLVTYGNIIAGGTIDEPIKRHPVDRVKMAIL- 233 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 G + AVTHY + V+ + +TGR HQ+R H +++ H ++GD Sbjct: 234 -PGGRDAVTHYNVKERFR-----------DFTRVQAQLETGRTHQIRVHFSYIGHGLVGD 281 Query: 179 SKHGDLRQNRSGAEHF------GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 + + + +GA G +R LHA++L L HP TGE + A + + Q ++ Sbjct: 282 QVYMNRVRIPAGASELLIETLRGFKRQALHAAKLGLKHPRTGEEMLFEAPWPEDFTQLVN 341 Query: 233 QFGWRGL 239 Sbjct: 342 VLRTENA 348 >UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BSG2_DESAD Length = 549 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 71/269 (26%), Positives = 111/269 (41%), Gaps = 28/269 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTV-----RDQIGQHVFTAHRLDRP 56 LEI+Y D + +NKP+G H + +V RD HRLD+ Sbjct: 94 LEIIYNDGKIAVINKPAGLTTHPAPSCPTGTLVHRMIHHFPEIRDMDEWRPGIVHRLDKF 153 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKF 115 TSG++ + L+ ++ F ++ K Y AIV G E +D P+ Sbjct: 154 TSGLITVALNEHDRLAMSTAFADREVNKAYLAIVHGVPKREFGEIDQPMGRHPVHKTKMA 213 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 KG + A + Y L + P R LV+++ TGR HQ+R H+AH+ HP+ Sbjct: 214 VVL-KGGRDARSEYEVLWS---------DPAGRASLVKVKIYTGRTHQIRVHMAHIGHPL 263 Query: 176 IGDSKHGDLRQNRSGAEHFGL----QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +GD +G + + L +R MLHA LS THP + E L+ + ++ L Sbjct: 264 VGDQVYGSMPHAIWEQDQPQLAKLAERQMLHAYSLSFTHPDSEEELSFTQAPPEDFINML 323 Query: 232 SQFGWRGLLPENERVEFSAPSGQDGEISS 260 ++ V+ G S Sbjct: 324 KAL--------DKSVQRVGLIGMPCGGKS 344 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 25/243 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L+I+Y+D+ ++ +NK +G +VH + + + +V HRLD+ Sbjct: 82 LDIIYEDKDILVLNKNAGLVVHPAPGNHENTLVNALIAYCDNLSTISGVNRPGIVHRLDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSGV+++ + + R L +QF+Q + +K Y +++G L +E +D P+ + Sbjct: 142 DTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLKGELPYKEGKIDAPIGRDPHDRKKM 201 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 K + AVT+++ L + VE+E KTGR HQ+R H +++ P Sbjct: 202 AVTR-KNSKKAVTYFKVLEFFR-----------DHSYVEVELKTGRTHQIRVHFSYMGFP 249 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GDS +G R R +LHA +L HP + + A L D + +AL Sbjct: 250 VVGDSIYGKKR------NRLQATRQLLHAYRLGFYHPRNDKWVEYKASLPDDFKKALDIL 303 Query: 235 GWR 237 + Sbjct: 304 ENK 306 >UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ60_LAWIP Length = 541 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 28/265 (10%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-----DQIGQHVFTAHRLDR 55 LEIL+ DE L +NKP G VH + ++ +V +Q G HR+D+ Sbjct: 82 FLEILFSDEHLAIINKPPGLTVHPAPSCQESTLVHRLLKYFPKLIEQGGLRPGIVHRIDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG+L + L+ + L++ F +I K Y A+V G E + PL + Sbjct: 142 DTSGLLCIALTEDTRLKLSKIFLDRKINKEYLALVHGVPSMEGYIAVPLGRDP--KTKVK 199 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + +PA T +R L + V Y ++ L +TGR HQ+R H+ H+ HP+ Sbjct: 200 VAVNPKGKPAHTEWRVLHRGKNDV---------YSILALTIQTGRTHQIRVHMKHIGHPL 250 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD + N++ R MLHA +LS HP TG+ + ++ +S Sbjct: 251 VGDKLYAGGHVNKTFQ----CNRQMLHAWKLSFEHPITGKKMNFLCPPPKDFLDTVSLLE 306 Query: 236 WRGLLPENERVEFSAPSGQDGEISS 260 +G G + Sbjct: 307 QE--------PIRIVITGVAGSGKT 323 >UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JRD0_AGRVS Length = 342 Score = 312 bits (800), Expect = 9e-84, Method: Composition-based stats. Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 24/254 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L +LY+D+ L+ ++KP+G +VH + +V + HRLD Sbjct: 90 LTVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGGVKRPGIVHRLD 149 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQ----IQKRYHAIVRGWLME-EAVLDYPLVEELD 109 + TSGV+++ + A R LA QF H +++ Y A+V G +D L D Sbjct: 150 KETSGVMVVAKNDIAHRHLADQFADHGRSGPLERAYQALVWGRPRGLRGTIDAALGRAGD 209 Query: 110 KIADKFARED-KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHL 168 + RED + A+THY+ + LVE +TGR HQ+R H+ Sbjct: 210 RTKRTVKREDTDDAREAITHYQVMERYGEKPDATCL----ASLVECRLETGRTHQIRVHM 265 Query: 169 AHLRHPIIGDSKHGDLRQNR-------SGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHA 221 AH+ HP+IGD ++G + + + A R LHA L+ HP TG+ + A Sbjct: 266 AHIGHPLIGDPEYGAAFKTKANLLPDAAKAIVTNFHRQALHAYLLAFEHPTTGDVMHFAA 325 Query: 222 GLDDTWMQALSQFG 235 + D + Sbjct: 326 PIPDDMETIIRALR 339 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 24/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQT-----VRDQIGQHVFTAHRLDRP 56 + ++Y+D+ ++ +KP G + H + +V ++ Q HRLD+ Sbjct: 88 IPVIYEDDDIIVFDKPPGIVTHPAPGHEHGTLVNALKAIRPDLQVQPSHRPGIVHRLDKD 147 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKF 115 TSG+L++ + A L +Q++ + K+Y A+V G + + +D P+ + + Sbjct: 148 TSGLLVVAKTEAARLALLEQWQSRSVVKKYTALVHGVVEPDSGTIDAPISRDPVERTKMA 207 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 +PA+TH+R L L+++ +TGR HQ+R H A + HP+ Sbjct: 208 VV--SWGRPAITHFRVLERFRC-----------ATLLDVTIETGRTHQIRVHCAFIGHPV 254 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GDS++G R + R LHA L HP TG+ + + L L Sbjct: 255 VGDSQYGGHRPF-----CVPVPRQFLHARYLRFVHPTTGQAIELETPLPYDLRTVLEALR 309 >UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXT6_JANMA Length = 342 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 16/239 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI---GQHVFTAHRLDRPTS 58 L I+++D ++ +NKP+G +VH + + ++ HRLD+ TS Sbjct: 115 LAIVHEDAEMLVINKPAGLVVHPAAGNWSGTLLNGLLHYLPSISGVPRAGIVHRLDKDTS 174 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + A L +Q + +++ Y A+V G +D + E Sbjct: 175 GLMVVAKTLIAHTDLVRQLQARTVKREYLALVWGTPNITGKIDASIGRHARDRIKMAVSE 234 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + +PAVTH++ LAT G L+ +TGR HQ+R H+ + ++GD Sbjct: 235 NLTAKPAVTHFQRLAT-------GMLDGRPVSLMLCRLETGRTHQIRVHMQSIGFALVGD 287 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 +G R LHA +L L HP +GE + + L + + +++ G + Sbjct: 288 GLYGKQHLTTV------FPRQALHARRLGLIHPVSGEAVEWSSELPQDFAELIARAGIK 340 >UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacteria RepID=A7HV45_PARL1 Length = 482 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 108/257 (42%), Gaps = 32/257 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-------GQHVFTAHRLD 54 LEI+Y+D L+ V KP+G +VH + + D +V + HRLD Sbjct: 226 LEIVYEDADLIVVMKPAGLVVHPAPGNPDMTLVNALVAHCGETLSGIGGEKRPGIVHRLD 285 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQH----QIQKRYHAIVRGWL-MEEAVLDYPLVEELD 109 + TSG++++ + A + L+ QF H ++ + Y A+ G + +D + Sbjct: 286 KETSGLMVVAKTDRAHQGLSAQFAAHGRDGKLTRAYTALTWGVPQTRKGTVDANIARSSH 345 Query: 110 KIADKFAREDKG----PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLR 165 + D+G + A+THY Y VE +TGR HQ+R Sbjct: 346 NRSKMATVRDRGEETGGRIAITHYTV---------KTDYADGLVAEVECRLETGRTHQIR 396 Query: 166 RHLAHLRHPIIGDSKHGDLRQNRSG-------AEHFGLQRLMLHASQLSLTHPFTGEPLT 218 H+ L HP++GD+ +G ++R A L R LHA L HP GE ++ Sbjct: 397 VHMTALGHPLLGDATYGTGMKSRKSKLSPEAQAALERLNRQALHAHHLGFEHPVAGEKMS 456 Query: 219 IHAGLDDTWMQALSQFG 235 A L + + + Sbjct: 457 FDAPLPEDMQELVRALE 473 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 28/254 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-----GQHVFTAHRLDRP 56 L+++Y+D L+ VNKP G +VH + ++ + + HR+D+ Sbjct: 132 LDVVYEDSDLMVVNKPPGMVVHPGHGNYSGTLINALLFHVKDLPLNADERPGLVHRIDKD 191 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKF 115 TSG+L++ +++A LA+QF ++ Y AIV G + EE + + Sbjct: 192 TSGLLVVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNVEEEQGTVRGHIGRHPKNRLQMA 251 Query: 116 AREDKG-PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 D + AVTHY+ + + LV +TGR HQ+R H+ H+ H Sbjct: 252 VFPDGDQGKEAVTHYKVMERLGY-----------VTLVSCVLETGRTHQIRAHMKHIGHT 300 Query: 175 IIGDSKHGDLRQNRSGA----------EHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 + D ++G + + L R LHA L HP +GE + + + Sbjct: 301 LFNDERYGGEKILKGTTFTKYKQFVDNAFKALPRQALHAKTLGFVHPSSGELMRFNTPIP 360 Query: 225 DTWMQALSQFGWRG 238 + + + ++ Sbjct: 361 EDMVLCIEKWRAYA 374 >UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=C6WV38_METML Length = 368 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 23/244 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+I+Y+D+ ++ VNKP+G +VH + + D ++ HRLD+ TS Sbjct: 90 LDIVYEDDHILVVNKPAGMVVHPAAGNWDGTLLNALLFHAPQLHDVPRAGIVHRLDKETS 149 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+L++ + A L +Q + +++ Y AIV G L V+D PL + Sbjct: 150 GLLVVAKTLNAQTHLVRQLQARTVKREYRAIVWGQLWRNGVVDQPLGRDPRSRTKMAI-- 207 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 ++ +PA+T Y L + + +TGR HQ+R H+ HL+ P++GD Sbjct: 208 NRMGKPAITRYEILERFSVQ-----------TYLRCNLETGRTHQIRVHMQHLKAPLVGD 256 Query: 179 SKHGDLRQNRSGAEHFGL-------QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +G A L R LHA +L L HP T E + L D L Sbjct: 257 PVYGFRGIVPIRAMTQTLRDAVSQFHRQALHAIKLGLVHPATNEFMEWQIELADDMKVLL 316 Query: 232 SQFG 235 Sbjct: 317 EAMR 320 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 36/252 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------------------ 43 LEILY+D+ L+ ++KP G +VH + +V Q Sbjct: 95 LEILYEDDDLIVISKPPGLVVHPAPGHASGTLVNGLLFHFQSQGDEQKKGEPEEEEEAER 154 Query: 44 GQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDY 102 HRLD+ TSGV+++G S L QF+ + K+Y A+V+G L ++ ++ Sbjct: 155 PLRAGLVHRLDQDTSGVMVVGKSETVVLDLMNQFKDRSVSKKYLALVKGILPKKRGEINA 214 Query: 103 PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKH 162 P+ R+D +P++T YR L T Y L+E+ TGR H Sbjct: 215 PIGRSTHDRKKFAVRQD--GKPSLTRYRVLETYHE----------NYSLLEVTLLTGRTH 262 Query: 163 QLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAG 222 Q+R H HL P++GD+ +G G E+ R MLHA +L+ HP + + A Sbjct: 263 QIRVHFRHLGFPLLGDAVYGSK-----GMENRNFPRQMLHAWKLAFQHPRSAAKMEFEAP 317 Query: 223 LDDTWMQALSQF 234 L ++ A+ + Sbjct: 318 LPPDFVSAMKRL 329 >UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=C7RM94_9PROT Length = 375 Score = 309 bits (793), Expect = 7e-83, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 18/241 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L I+++D+ L+ ++K +G +VH + ++ HRLD+ T+ Sbjct: 107 LRIVFEDDTLIVLDKQAGLVVHPGSGNWRGTLLNGLLHHAPQLARVPRAGIVHRLDKDTT 166 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + EA L +Q + +++ Y A+VRG + ++D P+ Sbjct: 167 GLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIVEGAGIVDAPIGRHPTVRTRMAVV- 225 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 G +PA THYR L L+E +TGR HQ+R H+ + HP++GD Sbjct: 226 -SGGRPARTHYRVLERFVA-----------CTLIECALETGRTHQIRVHMTSIAHPLVGD 273 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 +G + R LHA +L+L HP +G+ + +G+ + + Sbjct: 274 PIYGGGAS--RVPQGAVFPRQALHACRLALVHPASGKAMLWRSGVPADMAALIDRLRLES 331 Query: 239 L 239 L Sbjct: 332 L 332 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 110/238 (46%), Gaps = 21/238 (8%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDRPTS 58 LY+DE ++ + KP G +VH + R +V + HRLD+ TS Sbjct: 96 LYEDEDILVLVKPPGLVVHPADGHRQGTLVHGLLHHCRNLSGISGQLRPGIVHRLDKDTS 155 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G L++ + A L QQF+ +++K Y A++RG L E+ + P+ R Sbjct: 156 GCLVVAKNDLAHHNLVQQFKGREVEKTYQALLRGILAEDTGQVVLPIGRHPVHRKKMAVR 215 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + G + AVTH+R + Y LVEL +TGR HQ+R H+A L HP+ G Sbjct: 216 RE-GGREAVTHWRVRQRF----------SAGYTLVELLLETGRTHQIRVHMAALGHPLAG 264 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 D +G N +G+ R LHA +L+ HP +G LT A L +L + Sbjct: 265 DRLYGR---NPEKDMPYGIDRQWLHAWRLAFNHPRSGRRLTFTAPLWVDLQASLDRLR 319 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 110/240 (45%), Gaps = 28/240 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ--------HVFTAHRL 53 L+I+++D+ L+ VNKPSG +VH S +V HR+ Sbjct: 80 LDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDSTSEEIYRPGLVHRI 139 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIA 112 D+ TSG+L++ +++ + LA+Q ++++ + Y AIV G E V+D PL Sbjct: 140 DKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGVVDAPLSRHQTNRL 199 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + +KG + A+TH+ L + + Y LV +TGR HQ+R H+ ++ Sbjct: 200 KRVV--EKGGKNAITHFEVLDSF-----------SDYSLVSCRLETGRTHQIRAHMEFIK 246 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 HPI+ D + +N + LHA LS THP TGE L + + + Sbjct: 247 HPIVNDPLYHPKGKNATEF------GQFLHARTLSFTHPLTGETLNFQVEPPKEFAEFIQ 300 >UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0R4_DICTD Length = 303 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 116/243 (47%), Gaps = 26/243 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 +EI+Y+DE +V +NKP G +VH + ++ +V R + HRLD+ Sbjct: 79 IEIVYEDEDMVIINKPKGMVVHPAHGHYNDTLVNALLYRVKDLSGIGGELRPGIIHRLDK 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 T+G+L++ + + + L++Q + +++ Y A+ G + EE ++ P+ Sbjct: 139 DTTGLLIIAKNDLSHQKLSEQLKNRTLRRTYWALCEGEIPWEEKRIEAPIGRHPINRKKM 198 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A+T+++ L + Y L+ + +TGR HQ+R H++HL P Sbjct: 199 AIV--PYGKIAITNFKVLERFK-----------GYTLISADLETGRTHQIRVHISHLGFP 245 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 I+GD +G + FG++ +LHA ++S HP G P+ L + + + L+ Sbjct: 246 IVGDEVYG------RIDKKFGVKGQLLHAKKVSFIHPTKGIPMEFEIDLPEEFKKVLTLL 299 Query: 235 GWR 237 + Sbjct: 300 REK 302 >UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB31_9CHLA Length = 319 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 72/253 (28%), Positives = 106/253 (41%), Gaps = 29/253 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG--------QHVFTAHRL 53 L ILY+DE L+ +NKP G +VH + + V HRL Sbjct: 87 LNILYEDEHLLIINKPVGMVVHPAPGNWTGTFVNALLYHCGYSLSDASVDSIRPGIVHRL 146 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIAD 113 D+ TSGVL+ + + L + F Q+ K Y AI G L++P+ Sbjct: 147 DKETSGVLVAAKTLSVQQKLMELFAARQVYKEYWAICLGNPGNC-ELNWPIGRHPIHRKQ 205 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 RED + A+T L L +L TGR HQ+R HL H H Sbjct: 206 MTVRED--GKEALTFCETLE-----------VGNEICLAKLILSTGRTHQIRVHLKHKGH 252 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GDS +G + N + +R MLHA +L+ HP T + + + A L + L + Sbjct: 253 PILGDSIYGSKQVN----MRYRAERQMLHARKLAFIHPITQQKIEVEAPLPADMEECLRK 308 Query: 234 FGWRGLLPENERV 246 + +L E+ Sbjct: 309 ---KAMLERTEKC 318 >UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49WX8_STAS1 Length = 305 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 106/241 (43%), Gaps = 27/241 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 L+I Y+D+ + V KP G +VH S +V + + HR+D+ Sbjct: 81 LDIYYEDDDVAIVYKPKGMVVHPSAGHYTGTLVNGLMYQMKNLSGINGEIRPGIVHRIDK 140 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG+L++ + A R L Q + ++Y A+V G + + +D P+ + Sbjct: 141 DTSGLLMVAKNDVAHRSLVDQLVNKTVTRKYVALVHGKIPHDYGTVDAPIGRNKNDRQSM 200 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 +D + AVTH+ L +Y L+E + +TGR HQ+R H+ ++ +P Sbjct: 201 DVVDD--GKEAVTHFNVLEHF-----------NKYTLIECQLETGRTHQIRVHMKYIGYP 247 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD K+G + + LHA + HP T E + L + + Q LS+ Sbjct: 248 LVGDPKYGPKK-------TLDIGGQALHAGIIGFEHPVTHEYIEKSTALPEDFEQLLSEL 300 Query: 235 G 235 Sbjct: 301 R 301 >UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q2W2D5_MAGSA Length = 505 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 106/249 (42%), Gaps = 25/249 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L ++Y+DE L+ ++KP+G +VH + + DE +V + HR+D Sbjct: 265 LTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCGESLAGIGGVKRPGIVHRID 324 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 + TSG+L+ + A R LA QF H +++ Y A+V G + ++ + + Sbjct: 325 KDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGEIEGNIGRNPNDRKK 384 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + G +PA+T YR L + LVE TGR HQ+R H+ H Sbjct: 385 MAVVKS-GGKPALTRYRVLKSF---------AGGAVSLVECRLATGRTHQIRVHMTTQGH 434 Query: 174 PIIGDSKHGDLRQNRS-------GAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 P++GD +G +R ++ R LHA L +HP G + +G+ Sbjct: 435 PLVGDPVYGRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGFSHPTKGYDVRFESGMPLD 494 Query: 227 WMQALSQFG 235 + Sbjct: 495 INALMQILE 503 >UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=C4FWV7_9FIRM Length = 309 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 21/242 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L+I+Y+DE ++ +NKP+G +VH S +V HR+D Sbjct: 81 LDIIYEDEDILVINKPAGLVVHPSKGHLKGTLVNGLLHYLNGNLSTGSDFYRPGIVHRID 140 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 + TSG+L++ + A + LA Q H +++ Y A+V G + + ++ PL + Sbjct: 141 KDTSGLLVVAKHNAAHQALADQLLNHDMRRSYIALVHGQVKAPQGTIEAPLQRDPANRLR 200 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K + A+T ++ + E L++LE +TGR HQ+R HL + H Sbjct: 201 WTV--AKEGKYALTRFQVMENFE-----------NATLLDLELETGRTHQIRVHLEFIGH 247 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++GD + + G+ + +LHA L L HP +GE L A L + +AL Q Sbjct: 248 PLVGDPVYRKGLDHIKGSLVHDMTGQLLHAYALKLQHPRSGEWLEFKAPLPRRFEEALDQ 307 Query: 234 FG 235 Sbjct: 308 LR 309 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 110/246 (44%), Gaps = 24/246 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG------QHVFTAHRLDR 55 L+ILY+DE L+ +NKP+G +VH D VV Q HRLD+ Sbjct: 98 LDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIGGVQRPGIVHRLDK 157 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADK 114 T+G +++ + A L Q ++ ++ Y IV G E + ++ P+ Sbjct: 158 DTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVNLPVGRHPGDRQKM 217 Query: 115 -FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 +KG + AVTH+R L + + +E + +TGR HQ+R H + H Sbjct: 218 GIVPVEKGGREAVTHWRLLERI-----------GNHSWLEFQLETGRTHQIRVHSKQMGH 266 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++GD+ + G+ + L LHA QLSL HP +GE +T A + + + L Sbjct: 267 PLVGDNLY-----TSPGSVNVNLPGQALHAHQLSLIHPVSGEIITAIAPMPAHFEKLLVY 321 Query: 234 FGWRGL 239 R Sbjct: 322 LRQRIP 327 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 76/269 (28%), Positives = 118/269 (43%), Gaps = 28/269 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-----GQHVFTAHRLDRP 56 L++LY D ++ +NKP+G +H + D +V G HRLD+ Sbjct: 93 LKLLYLDGDVLVLNKPAGLTIHPASSQPDGTLVNRLLHHFPDMRAMAGDRPGIVHRLDKD 152 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKF 115 TSG+LL+ + A LA F + ++ K Y A+V G + V++ P+ + Sbjct: 153 TSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPERSDGVIELPVGRDPKHPTKMA 212 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 KG + A + ++ T P L+E+ TGR HQ+R H+A + HPI Sbjct: 213 VV-AKGGREAKSSWKLAWT---------APDGTASLLEVAIATGRTHQIRVHMAAMGHPI 262 Query: 176 IGDSKHGDLRQ----NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +GD+ +G + R GA +R MLHA +L+ +HP TGE L+ + Sbjct: 263 VGDAVYGARQHSDWTRRGGAMARLAKRQMLHAWKLAFSHPGTGEELSFCQPPPADF---- 318 Query: 232 SQFGWRGLLPENERVEFSAPSGQDGEISS 260 WR LL R + G G S Sbjct: 319 ----WRLLLMLGRRCQRVGLVGMPGCGKS 343 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 24/245 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+I+Y+D+ ++ +NKP G +VH + +V HR+D+ TS Sbjct: 181 LDIIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLYHYPNQAHLPRAGLVHRIDKNTS 240 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW---LMEEAVLDYPLVEELDKIADKF 115 G+L++G + A L +Q + + + Y +V G L + +D P+ + Sbjct: 241 GLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPSLARQRTIDAPIGRHRTQRTKMT 300 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + A+TH + + Y L+++ +TGR HQ+R HL+H+ HPI Sbjct: 301 VT--STGKTAITH----------IMKITPLSDTYSLLDVRLETGRTHQIRVHLSHIGHPI 348 Query: 176 IGDSKHGDLRQNRSG------AEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 IGD +G+ +Q R+G R LHA +L HP TGE + + A L ++ Sbjct: 349 IGDDIYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIELTAPLPQDIVE 408 Query: 230 ALSQF 234 Sbjct: 409 LAHTL 413 >UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1I9_DESRD Length = 547 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 27/268 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ-----IGQHVFTAHRLDRP 56 +E++Y D +V VNK +G VH +V G+ HRLD+ Sbjct: 91 VEVVYSDPDVVVVNKAAGVTVHPGTGCESGTLVHHLAALYPELARFDGERPGVVHRLDKD 150 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 TSG+L + L+ A L + F + ++ K Y +V G E +D+PL + Sbjct: 151 TSGLLTVALNESARLALTRSFARREVDKEYLTLVHGRPEAEGTVDHPLGRDPQSKIRMAV 210 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 +G + A+T ++ + T P R L+ + TGR HQ+R H+A+L P++ Sbjct: 211 VP-RGGKEALTRFKRVWT---------SPDGRVSLLRVRILTGRTHQIRVHMAYLGFPLV 260 Query: 177 GDSKHGDLRQNRSGAEHFGLQRL----MLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 GD+ +G Q L RL MLHA +L+ HP +G + + Sbjct: 261 GDALYGPQAQAAFQRSRPLLARLAKHHMLHAWRLAFPHPRSGRMVCCEQAMPKAM----- 315 Query: 233 QFGWRGLLPENERVEFSAPSGQDGEISS 260 WR +L RV+ +G G S Sbjct: 316 ---WRLVLGCGRRVQRVGLTGMPGCGKS 340 >UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae RepID=C8PVB8_9GAMM Length = 380 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 106/248 (42%), Gaps = 27/248 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+ILY+DE ++ +NKP G +VH + +V HR+D+ TS Sbjct: 143 LDILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNALLFHYPDSRTLPRAGLVHRIDKETS 202 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIV---RGWLMEEAVLDYPLVEELDKIADKF 115 G++++ S++ L Q + + + Y AIV L +D P+ + Sbjct: 203 GLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLASAAELARHRTIDAPIGRHPTQRTKMA 262 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 +PAVTH + + LV + +TGR HQ+R HL++L P+ Sbjct: 263 VVSS--GKPAVTHLEKI----------TAISDAVSLVSVRLETGRTHQIRVHLSNLGFPL 310 Query: 176 IGDSKHGDLRQNRSGAEHF---------GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 +GD +G R+N + QR LHA +L HP TGEP+ + A L + Sbjct: 311 LGDPLYGAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIHPKTGEPIKVQARLPED 370 Query: 227 WMQALSQF 234 Q L Sbjct: 371 MQQLLDTL 378 >UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q3A0C2_PELCD Length = 326 Score = 306 bits (784), Expect = 7e-82, Method: Composition-based stats. Identities = 71/253 (28%), Positives = 111/253 (43%), Gaps = 23/253 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L ILY+D L+ ++KP G +VH + +V Q HRLD+ Sbjct: 81 LVILYEDRHLIVIDKPPGMVVHPAPGHYQGTLVNALLHHCQDLSGIGGELRPGIVHRLDK 140 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSGV++ + A + LA QF+ H I +RY A++ G L + +D P+ Sbjct: 141 DTSGVMVATKTDSAHQSLAAQFKAHSITRRYIALIHGVLTGDRGSIDRPIGRHPTHRKKM 200 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + AVTH+R L + R LVEL +TGR HQ+R H + +HP Sbjct: 201 STTC-RTGRHAVTHWRVLRRFD---------DDRLTLVELALETGRTHQIRVHFSEQQHP 250 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQ------RLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 ++GD +G + ++ + L+ R LHA L HP TG+ L + L + Sbjct: 251 LLGDPVYGGSGRLKTINDPQLLKRAKALGRQALHARLLGFQHPETGKYLEFSSPLPEDLR 310 Query: 229 QALSQFGWRGLLP 241 + + P Sbjct: 311 SVIDYLTEKYGQP 323 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 110/267 (41%), Gaps = 33/267 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV--VVMQTVRDQI-----GQHVFTAHRLD 54 + ++Y+D+ L+ VNK +G +VH + + V +RD V HR+D Sbjct: 131 INVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVAWHLRDMPEFDANDPEVGLVHRID 190 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIAD 113 + TSG+L++ + A L +QF + Y+A+V G + +E ++ + + Sbjct: 191 KDTSGLLVVAKTPTAKNALGKQFFNKTTHRSYNALVWGNIVEDEGRIEGNIGRDPKNRLR 250 Query: 114 KFA-REDKG-PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 D G + AVTHY+ L LV+ +TGR HQ+R H+ H+ Sbjct: 251 MKVFDPDSGIGKTAVTHYKVLERFGYT-----------TLVQCVLETGRTHQIRAHMKHI 299 Query: 172 RHPIIGDSKHGDLRQNRSGAEH----------FGLQRLMLHASQLSLTHPFTGEPLTIHA 221 HP+ D +G R R LHA L HP T + + + Sbjct: 300 GHPLFMDETYGGTEILRGQRSSSYKAFIQNCFKLCPRQALHAKTLGFVHPTTKQQMDFDS 359 Query: 222 GLDDTWMQALSQFGWRGLLPENERVEF 248 + + Q + + WRG + + F Sbjct: 360 EWPNDFRQLIEK--WRGFIAGTTQDTF 384 >UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae RepID=A9BMW0_DELAS Length = 356 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 25/242 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+++Y+DE L+ VNKP+G +VH + + ++ RD HRLD+ TS Sbjct: 125 LDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTLLNGLLGRDPKAREVPRAGIVHRLDKDTS 184 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW--LMEEAVLDYPLVEELDKIADKFA 116 G++++ S A L + ++Y A+ + +D P+ + Sbjct: 185 GLMVVARSRAAMDALVAMIAARDVSRQYLALAHKAWGPRKHREVDAPIGRDPRNRLRMAV 244 Query: 117 RE--DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + A T LA LV TGR HQ+R H+A L HP Sbjct: 245 VDLAQHAGKTARTDIDLLA-----------GNEEVSLVRCTLHTGRTHQIRVHMASLGHP 293 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++ D+ +G E G+ R LHA +L+ THP TG+ L + A L QAL + Sbjct: 294 LVADAVYGGK-------EAGGMARQALHAFRLAFTHPMTGQALVLRAPLPPDMAQALENW 346 Query: 235 GW 236 G Sbjct: 347 GL 348 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 22/247 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV---FTAHRLDRPTS 58 L ILY D+ ++ +NKP+G +VH + + D ++ +H+ HRLD+ TS Sbjct: 86 LNILYADDDIIVINKPAGLVVHPAVGNHDNTLLNALLYHFPQTKHLPRSGIVHRLDKDTS 145 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G +++ S+ A L +Q + + + Y A+V G++ +D P+ R Sbjct: 146 GAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITAGDTIDLPIGRHAKDRLKMAVRP 205 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D +PA+THYR L+ ++ +TGR HQ+R HL+H RHP++GD Sbjct: 206 D--GKPAITHYRIEERW-----------QTLTLLRVQLETGRTHQIRVHLSHHRHPLVGD 252 Query: 179 SKHGDLRQNRSGAEHFG------LQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G S R LHA +L L HP T E + A L D Q + Sbjct: 253 KLYGARPFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFTAPLPDDMTQLFT 312 Query: 233 QFGWRGL 239 + Sbjct: 313 ILRAQNP 319 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 18/242 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDR 55 ++++Y+D++L+ ++KP+G +V+ D ++ HRLD+ Sbjct: 82 IQVIYKDDYLIVLSKPAGMVVYPCAGHPDGTLMNALAYHVKKLANVGAPFRPGIVHRLDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSGV+++ L E L + F++ +I+K Y A+V G L + P+ + Sbjct: 142 DTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYGQLRGSGKITTPVGRAIYDRKKMS 201 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + K + A+T + + + Y ++++ TGR HQ+R H + + HP+ Sbjct: 202 IK-SKKAKEAITEWEVIKNFK-----------NYTFLKVKILTGRTHQIRVHFSSIGHPV 249 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 IGD +G G + + R MLHA ++ L HP T + L A L D L+ Sbjct: 250 IGDKTYGRKTYIEIGNKKIPVSRQMLHAHKIELIHPITEKLLQFEASLPDDIQYILNILE 309 Query: 236 WR 237 R Sbjct: 310 DR 311 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 100/244 (40%), Gaps = 23/244 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L++L++DE ++ +NK +G VH + ++D +V HRLD+ Sbjct: 106 LDVLFEDEHIIVLNKSAGLTVHPAPGNKDGTLVNGLLHHCPDLPGISGKLRPGIVHRLDK 165 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG +++ S EA L Q ++ + Y A+V G + + + Sbjct: 166 DTSGCIVVAKSQEALVKLQVQIQKRVASREYFAVVHGVPDGDSGTIIGAVGRHPVDRKKY 225 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 D+ + A TH+ + Y L+ + TGR HQ+R H AH+ HP Sbjct: 226 AVVSDESGRYARTHWTLIERF-----------GDYSLLRFKLDTGRTHQIRVHCAHINHP 274 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD + R+ L LHA QL L HP TGE + A L + L Sbjct: 275 VVGDPTYSRCRKLP-----LDLPGQALHAVQLGLDHPITGERMVFEAPLPPVMEKLLLVL 329 Query: 235 GWRG 238 R Sbjct: 330 RRRS 333 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 28/241 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ------IGQHVFTAHRLDR 55 LEI++QD+ L+ +NKP G VH + D ++ + HRLD+ Sbjct: 80 LEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVLALEPKMEDFDDPLRPGIVHRLDK 139 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 TSG+LL+ + E L+ QF++ ++K Y +V+G L E ++ PL + Sbjct: 140 DTSGLLLVAKNRETLANLSAQFKERTVRKYYLTLVKGELHPAEGFIEAPLGRDPQNRQKI 199 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A T Y+ L + Y L+E++ +TGR HQ+R H A + HP Sbjct: 200 AVV--SNGRHARTGYKVLRYI-----------QGYSLLEVKLETGRTHQIRVHFAAIGHP 246 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + GD+ +G L+R LHA +LS T P G+ + + L + L Sbjct: 247 VAGDAIYGQKETW--------LKRQFLHAHRLSFTLPSNGQTVEFTSPLPPDLEETLKIL 298 Query: 235 G 235 Sbjct: 299 E 299 >UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9J0_MAGSM Length = 332 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 104/253 (41%), Gaps = 32/253 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-------------HVF 48 LEIL++DE L+ +NKP+G +VH +V Sbjct: 87 LEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYHCGTPDNPHGGLSGIGGVIRPG 146 Query: 49 TAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEE 107 HRLD+ TSG+++ A L++QFEQ I +RY A+ RG + ++ + Sbjct: 147 IVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRTIGRRYLALTRGIPQPAQGRIEGAIGRH 206 Query: 108 LDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 ++G + A T Y+ L P ++ L+ ++GR HQ+R H Sbjct: 207 PIHRTKMAVV-EQGGRAAATRYKVLE-----------PLGQFALIRCRLESGRTHQIRVH 254 Query: 168 LAHLRHPIIGDSKHGDLRQNRSGAEHFG------LQRLMLHASQLSLTHPFTGEPLTIHA 221 + H+ HP++GD +G + S QR LHA L+ HP TGE ++ Sbjct: 255 MTHIGHPLVGDPLYGAQHKAPSHWPPLHRQRFDQFQRQALHAHTLTFIHPHTGEEMSFKR 314 Query: 222 GLDDTWMQALSQF 234 + Q Sbjct: 315 PPPADFRQLYETL 327 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 25/247 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L ILY+D L+ ++KP+G +VH + +V + HRLD+ Sbjct: 85 LSILYEDHDLLVLDKPAGLVVHPAAGHVSGTLVNALLFHCRDLAGIGGVMRPGIVHRLDK 144 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG+L++ + A + LA QF++HQ+ K Y A+V G E+ +D P+ + K Sbjct: 145 DTSGLLVVAKTDAAHQGLALQFKKHQVGKTYQALVYGDPREKTGQIDLPVGRHPVER-KK 203 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + + + A T +R + L+ ++ TGR HQ+R HLA + HP Sbjct: 204 MSTKSRRGKEAATRWRIAERFGV-----------ATLLNVDIVTGRTHQIRVHLAAIGHP 252 Query: 175 IIGDSKHGDLRQNRSGAEHF------GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 ++GD+ +G ++ + + + R LHA++LS THP T + L HA L Sbjct: 253 VVGDAVYGSSKRATTLTDPAVKGRLKEMSRQALHAARLSFTHPVTHKILEFHAPLPADME 312 Query: 229 QALSQFG 235 + Sbjct: 313 DLCAFLR 319 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 107/248 (43%), Gaps = 22/248 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+ILY+DE + +NKP+G +VH + D +V RD HRLD+ TS Sbjct: 90 LDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKDTS 149 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 GV+++ + +A L +Q Q+ ++Y A+V L+ ++ + Sbjct: 150 GVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHPRDRLRMEV-- 207 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + AVTHYR + +E TGR HQ+R H+AHLRHPI+GD Sbjct: 208 SDTGKEAVTHYRLRERFRA-----------HTALECRLDTGRTHQIRVHMAHLRHPIVGD 256 Query: 179 SKHGD------LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G + A G +R LHA L HP P+ I A + + Q L+ Sbjct: 257 RLYGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVPEDLCQLLA 316 Query: 233 QFGWRGLL 240 L Sbjct: 317 ALREDSAL 324 >UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AW00_RUTMC Length = 314 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 22/243 (9%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD---QIGQHVFTAHRLDRPT 57 +++++Y+DE ++ VNKP + H + + D HRLD+ T Sbjct: 79 VIDVVYEDEAIIIVNKPVNLVTHPGVSNWTGTLANALLHYDSSLANLDRAGIVHRLDKNT 138 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAR 117 SG++++ S A + L +Q + H I + Y AIV G ++ +D P+ + + Sbjct: 139 SGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYGHMISGGTVDKPIGRDPKDRIRQTVT 198 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 E + A+THYR + + V++ +TGR HQ+R HL+ + HP+I Sbjct: 199 ES--GKDALTHYRVIERF-----------AHHTHVKVMLETGRTHQIRVHLSFIGHPLIA 245 Query: 178 DSKHGDLRQNRSGAEHFG------LQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 D +G + A+ R LHA +L+L HP + E ++ L L Sbjct: 246 DPMYGGKIRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTELMSWKVPLPQDMQDLL 305 Query: 232 SQF 234 Sbjct: 306 QVL 308 >UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPR1_9RICK Length = 325 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 21/248 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L I+++D+ ++ ++KP G +VH + ++ +V + HR+D Sbjct: 81 LNIIFEDQDIIIIDKPIGMVVHPGAGNYEDTMVNGLLYHCKNNLSGMNGEDRPGIVHRID 140 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 + TSG+L++ + +A +A+QFE+H I++ Y V G L ++ + Sbjct: 141 KDTSGLLVVAKNDQAHAFIAKQFEEHSIKRSYLVFVYGILRPLHGKIETLIGRNKTNRQK 200 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 A + + A+T+Y L + LV+ +TGR HQ+R H++H + Sbjct: 201 MSADVIR-GKDAITNYETLEVFKGNKIP------DISLVKCILETGRTHQIRVHMSHKGN 253 Query: 174 PIIGDSKHGDLRQNRSGAEHF------GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 PI+GD +G + G + L+R LHA L HP T E + + L D Sbjct: 254 PILGDQTYGKKIKKIRGIDQEFEEILKSLKRQALHAHTLGFIHPTTNEEVFFASELPDDL 313 Query: 228 MQALSQFG 235 + ++ Sbjct: 314 NKLKNRLE 321 >UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desulfovibrio RepID=B8J173_DESDA Length = 525 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 74/265 (27%), Positives = 108/265 (40%), Gaps = 29/265 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ-----IGQHVFTAHRLDRP 56 LE+L+QD+ LV NKP+G VH ++ +V R GQ HRLD+ Sbjct: 80 LELLWQDDHLVVCNKPAGLTVHPCPSCPEQTLVQRLLGRFPQLSRLEGQRPGIVHRLDKD 139 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 TSG+L++ L+ LA F + Q+ K Y A+V G E PL Sbjct: 140 TSGLLVVALTEADCLALAAAFAERQVHKEYLALVSGLPPLEGQCREPLGRHPTAKIKMAV 199 Query: 117 RE-DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 D+G + A T +R L + L+ + TGR HQ+R H+ HL +P+ Sbjct: 200 VPEDQGGRNAFTEWRRLWNTD---------DGSVSLLAVRIHTGRTHQIRVHMTHLGYPL 250 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD + A R MLHA +L THP +GE + Sbjct: 251 LGDRLY------APKAVQNMAPRQMLHAWRLGFTHPASGEDMRFTCPPPHDM-------- 296 Query: 236 WRGLLPENERVEFSAPSGQDGEISS 260 L +R++ +G G S Sbjct: 297 PDAALAAMQRMQRLVITGNPGSGKS 321 >UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=D0KVM5_HALNC Length = 340 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 22/242 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+I+Y+D+ ++ +NK +VH + + D +V D HRLD+ TS Sbjct: 81 LDIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNALLFHDPSLVSVPRAGVVHRLDKQTS 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 GV+++ + A ++L + +I++ Y +V G ++ +D P+ + Sbjct: 141 GVMVVAKTLAAHKILVENLAARKIRREYDTVVMGHVVAGGTVDAPIGRHPRDRQRQAVT- 199 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + AVTHYR L + ++ +TGR HQ+R H+AH+RHP+IGD Sbjct: 200 -ATGKRAVTHYRVLQHY-----------GEQTWLRVQLETGRTHQIRVHMAHIRHPVIGD 247 Query: 179 SKHGDLRQNRSGAEHFGLQ------RLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G + A + R LHA L+L HP TG + A + D + ++ Sbjct: 248 PVYGGRPRIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQMRFEAPMPDDMRELIA 307 Query: 233 QF 234 Sbjct: 308 LL 309 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 31/254 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR--------DQIGQHVFTAHRL 53 + ILY+D+ L+ ++K +G +VH ++ + + D+ HRL Sbjct: 77 ITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKDADELDKTEMRPGIVHRL 136 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIA 112 D+ TSG++++ + A LA+QF Q++K Y AIV G E + + Sbjct: 137 DKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKAESGTIKTNIGRSHKNRK 196 Query: 113 DKFAREDKG--PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 +G + A+T Y+ + + L+++ TGR HQ+R HL H Sbjct: 197 VMANFPYEGAEGKHAITDYQVVE-----------DLGYFSLMDVTLHTGRTHQIRVHLQH 245 Query: 171 LRHPIIGDSKHGDLRQNRSGAEH---------FGLQRLMLHASQLSLTHPFTGEPLTIHA 221 L H I+GD +G + R LHA L P TGEPL+ A Sbjct: 246 LGHSILGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFRQPTTGEPLSFSA 305 Query: 222 GLDDTWMQALSQFG 235 L + L + Sbjct: 306 PLPEDMELVLEKIR 319 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 105/240 (43%), Gaps = 25/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 LE+ ++D ++ VNKP G +VH + +V + HRLDR Sbjct: 81 LEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVNALLHHCRDLSGINGILRPGIVHRLDR 140 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG+L++ + A LA Q + + +RY A+V G E +D P+ Sbjct: 141 DTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTALVHGRPRRETGTVDAPIGRHPRDRQRM 200 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + A THYR + + ++ L+EL TGR HQ+R H+AH+ HP Sbjct: 201 AVTP-RSGRAARTHYRVVRRFD-----------KFSLLELTLDTGRTHQIRVHMAHVGHP 248 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD K+G R GL+ LHA L HP TGE L A L L + Sbjct: 249 LVGDLKYGHARPE------LGLEGQFLHAGTLGFRHPRTGEVLVFEAPLPSELAAVLERL 302 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 25/246 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI--------GQHVFTAHRL 53 L+I+Y+D+ ++ VNKP+G +VH + +V RD HRL Sbjct: 90 LDIIYEDDDILVVNKPAGMVVHPGAGNYTGTLVNALLGRDLDTFSAMDDGSSRPGIVHRL 149 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIA 112 D+ TSGV+++ S++ L++ F + ++K Y A+ RG + + + Sbjct: 150 DKETSGVIIVAKSAKNLDKLSRSFARRDVEKYYVALCRGTIRVGRDTITSHIGRSRSNRQ 209 Query: 113 DKFAREDKG-PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 D + A++HY+ LA LV+L+ TGR HQ+R H++ + Sbjct: 210 KMENTNDSNRGKEAISHYKVLA-----------DNNGATLVKLKIDTGRTHQIRVHMSGI 258 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 HP++GD +G R + E R +LHA + + HP T E +T A L D + Sbjct: 259 NHPVVGDKLYGVRRLD----EKESPDRHILHAWRTRIIHPGTQEIMTFTAPLHDDFKSVC 314 Query: 232 SQFGWR 237 +FG Sbjct: 315 DKFGIE 320 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 27/243 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 ++ILY+D + ++K +G +VH S +V + HRLD+ Sbjct: 77 IKILYEDSDIAVIDKEAGIVVHPSHGHESGTLVNAVMYHIKDLSGINGEIRPGIVHRLDK 136 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 TSG+L++ + A L++ F I+K Y AI++G + E L+ + + Sbjct: 137 DTSGLLIIAKNDTAHLRLSEMFGSSGIRKTYIAILKGKINKESGKLETLIGRDPKDRKKM 196 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + A+T+++ L E ++ LV++ +TGR HQ+R H+ +L +P Sbjct: 197 AVVKT-NGKTAITYFQVLDKNE-----------KFSLVKVNIQTGRTHQIRVHMKYLGYP 244 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GDS +G ++ R MLHA +L HP T + + I + L + +AL + Sbjct: 245 VLGDSVYG--------RDNKIAGRQMLHAYKLEFLHPVTQKAMKIISELPQDFEKALKET 296 Query: 235 GWR 237 G Sbjct: 297 GLE 299 >UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q0BWH2_HYPNA Length = 341 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 72/258 (27%), Positives = 107/258 (41%), Gaps = 26/258 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 LEIL++D LV +NK +G VH + + +V Q + HRLD Sbjct: 81 LEILFEDAHLVILNKAAGMAVHPAPGSQTGTLVNALLHHCQGQLSGIGGVERPGIVHRLD 140 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 + TSGV++ + A LA FE+H I + Y A+ RG ++ + Sbjct: 141 KLTSGVMVAAKTESAHTGLAALFERHDIDRVYRAVTRGAPRPLSGTIEAAIARSESDRKK 200 Query: 114 KFAR---EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 + + AVTHY+ + T R P L+E +TGR HQ+R H+AH Sbjct: 201 MSVHRNPDSPAARHAVTHYKAVETFGYKDRATRLPA--AALLECRLETGRTHQIRVHMAH 258 Query: 171 LRHPIIGDSKHGD-------------LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPL 217 P+IGD +G R +++ A R LHA+ L HP TGE L Sbjct: 259 SGAPLIGDPVYGRQAGIMAWKAPGSEARYDKALAAARAFSRQALHAAVLGFVHPITGETL 318 Query: 218 TIHAGLDDTWMQALSQFG 235 A L + ++ Sbjct: 319 RYEAPLPEDMTGLIAALR 336 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 25/239 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR------DQIGQHVFTAHRLDR 55 ++Y+DE++ ++KP +VH + +V + D HRLD+ Sbjct: 75 FNVIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNGLLYKFKNQLSDLDPLRPGIVHRLDK 134 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG++++ +++A L QF+ QI+K Y AIV G E ++ P+ + Sbjct: 135 NTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIVHGKTPESGIIAEPIGRNPNDRKKMA 194 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 K + A+T Y+ L Y L+ + TGR HQ+R H+A++ +P+ Sbjct: 195 VVY-KNSKQAITKYKKLKEF-----------QEYSLLNINLLTGRTHQIRVHMAYIGYPV 242 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +GD +G + + MLH+ +L HP T + + + + + + Sbjct: 243 LGDIIYGRK-------NSLKIDKQMLHSYKLIFNHPITNQKMEFTDEFPIRFKKFIDKI 294 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 32/256 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV-VMQTVRDQIGQ-----HVFTAHRLDR 55 ++I+Y+D+W+ +NKPS +VH + + +Q DQ+ HRLDR Sbjct: 93 IDIVYEDDWIAIINKPSDMIVHPGKGNYAGTLAGALQYHFDQLSDVAGQYRPGIVHRLDR 152 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG++++ ++ L+ QFE+ +QK Y AIV G + + +D + Sbjct: 153 NTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYRAIVWGRMEFDTDYIDTFMCVHPRAREKM 212 Query: 115 FAREDKG-PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 ++ G + A T+Y + + V L+P+TGR HQLR H+ H+ H Sbjct: 213 IVCDEGGNARNAFTYYEVIERY-----------QAFTYVRLKPRTGRTHQLRVHMQHIGH 261 Query: 174 PIIGDSKHGDLRQNR-------------SGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH 220 I+ D +G + + ++R LHA L HP +G+P+ Sbjct: 262 SIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHAYCLEFFHPQSGKPMKFE 321 Query: 221 AGLDDTWMQALSQFGW 236 A L + L+ Sbjct: 322 APLPEDMQNTLAALDQ 337 >UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM35_9FIRM Length = 308 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 26/247 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ-------IGQHVFTAHRLD 54 L+ILY+D ++ +NK G +VH + + +V + HRLD Sbjct: 80 LDILYEDNDMIVINKRRGVVVHPGAGNTEGTLVNALLFHCGEQLRSVGDPERPGIVHRLD 139 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIAD 113 + TSGV++ S A +L ++ H+ Q+ Y A+V G + + V+ PL Sbjct: 140 KDTSGVMVAAKSERAYGILQKEIASHKAQRCYIALVHGQMEGDTGVIRLPLGRSTKDRMK 199 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + +PAVTH+ + + Y +E + +TGR HQ+R H+AH+RH Sbjct: 200 WDV-LHETGRPAVTHFHVIEYLP-----------HYSWIECKLETGRTHQIRVHMAHIRH 247 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 ++ D +G + +HF ++ LH+ L L HP TGE + A + + + L+ Sbjct: 248 AVVNDPLYGWKK------DHFPIKGQALHSHTLELCHPITGEVMHFEAPVPEDMINCLNL 301 Query: 234 FGWRGLL 240 +L Sbjct: 302 ARKESML 308 >UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4S9_9DELT Length = 596 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 107/273 (39%), Gaps = 32/273 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI---------GQHVFTAHR 52 LE++++D + ++K +G H + + +V R Q HR Sbjct: 99 LEVVFEDAHVAVIDKRAGLTTHPAPGEPGPTLVNHLLHRWPDVASDISGMDRQRPGIVHR 158 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKI 111 LD+ TSG++++ L+ LA F +++K Y A+V G +D P+ + Sbjct: 159 LDKDTSGLMVVALTEGDRLRLAADFAGRRVRKVYLAVVLGRPAQPAGTIDAPMGRHPSQK 218 Query: 112 ADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 +G + AV+ YR L T P LV + TGR HQ+R H+AH+ Sbjct: 219 TRMAVV-ARGGREAVSDYRVLWT---------GPRGLASLVAVRIHTGRTHQIRVHMAHI 268 Query: 172 RHPIIGDSKHGDLRQ----NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 HP++GDS +G R R MLHA LS HP T E +T+ + Sbjct: 269 GHPLLGDSAYGPRENVEWSRRPDRLAGLAPRQMLHAFHLSFRHPATCERVTLWRRPPADF 328 Query: 228 MQALSQFGWRGLLPENERVEFSAPSGQDGEISS 260 L+ G G S Sbjct: 329 CTLLAAL--------PRECLRVGIVGMPGSGKS 353 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 23/245 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L++L++DE L+ +NKP+G VH + ++D +V HRLD+ Sbjct: 88 LDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHCPDLPGISGKLRPGIVHRLDK 147 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 T+G +++ S +A L Q ++ + Y A+V G E + + Sbjct: 148 DTTGCIVIAKSQQALVKLQVQIQKRVASREYLAVVHGVPAGESGTIVGAIGRHPVDRKKY 207 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + A TH+ + Y L+ + TGR HQ+R H AH HP Sbjct: 208 AVVSSDNGRYACTHWSLQERL-----------GDYSLLRFKLDTGRTHQIRVHCAHRNHP 256 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD + R+ L LHA QL L HP TGE + A L + + L+ Sbjct: 257 VVGDPTYSRCRKLP-----IELPGQALHAVQLGLDHPITGERMVFEAPLPEVLEKLLAVL 311 Query: 235 GWRGL 239 R Sbjct: 312 RKRAA 316 >UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D n=321 Tax=Gammaproteobacteria RepID=RLUD_ECOL6 Length = 326 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 22/245 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI---GQHVFTAHRLDRPTS 58 L+I+Y+DE ++ +NKP +VH + D V+ HRLD+ T+ Sbjct: 84 LDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTT 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + A L + ++ +I + Y A+ G + +D P+ K Sbjct: 144 GLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAV-- 201 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 +PAVTHYR + + + + L +TGR HQ+R H+AH+ HP++GD Sbjct: 202 HPMGKPAVTHYRIMEHFRV-----------HTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 Query: 179 SKHGDLRQNRSGAEHFGL------QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G + GA + R LHA+ L L HP +G + HA + ++ + Sbjct: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 Query: 233 QFGWR 237 Sbjct: 311 VMRAD 315 >UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacteria RepID=Q13E92_RHOPS Length = 426 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 26/252 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 LEI+++D+ ++ ++KP G +VH + +V + HRLD Sbjct: 178 LEIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCGESLSGIGGVRRPGIVHRLD 237 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQH----QIQKRYHAIVRGWLME-EAVLDYPLVEELD 109 + T+G+++ + A + L+ QF H ++++ Y+A V G +D P+ Sbjct: 238 KDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYYAFVWGAPNRIRGTIDAPIDRHPH 297 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 R+ G + A+TH+ L T TGR L+ + +TGR HQ+R HLA Sbjct: 298 AREKMAVRD--GGREAITHWEVLETF-----TGRSGGEIVSLIACQLETGRTHQIRVHLA 350 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHF-------GLQRLMLHASQLSLTHPFTGEPLTIHAG 222 H+ HP++GD +G + ++ L R LHA L L HP TGE + +G Sbjct: 351 HIGHPLLGDDVYGPHFKTKASQLRPDARAALTDLGRQALHAYLLVLEHPSTGEVVAWESG 410 Query: 223 LDDTWMQALSQF 234 L + + Sbjct: 411 LPADLKRLKAAL 422 >UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID=A8GQ59_RICAH Length = 329 Score = 299 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 23/245 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDR 55 L+I+Y+D+ L+ +NK +G VH D+ +V HRLD+ Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLYHTKNLSDIGSAARPGIVHRLDK 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADK 114 T+G++++ +++A LLA Q EQ Q+ ++Y A+V G + V+ + + Sbjct: 139 DTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKALVWGVINPLAGVIKNNIGRSRVERQKM 198 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 G + AVTHY+ L +VE TGR HQ+R L+H++H Sbjct: 199 SI-LKYGGKEAVTHYKTLELFY---------GGTISMVECRLNTGRTHQIRVQLSHVKHS 248 Query: 175 IIGDSKHGDLRQN------RSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 ++GD +G+ + A+ +R LH+ LS THP + + + L Sbjct: 249 VVGDQTYGNNDRKIAHSSPALKAKLIDFKRQALHSWYLSFTHPTSNKIMEFSCELPRDME 308 Query: 229 QALSQ 233 ++ Sbjct: 309 AIIAT 313 >UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibrioides RepID=B8GZR6_CAUCN Length = 342 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 92/240 (38%), Gaps = 18/240 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L ILY+D L+ V+K +G VH + + +V HRLD Sbjct: 103 LSILYEDAHLIVVDKAAGMAVHPAPGTYNGTLVNALLHHCGASLSGVGGVARPGIVHRLD 162 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 + TSGV++ S A R L+ F H I + Y A+ RG + + Sbjct: 163 KDTSGVMVAAKSDAAHRGLSTLFATHDIDRLYVALTRGAPNPPTGTIQTQIGRSPGDRKK 222 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 G + A+THYR A V +TGR HQ+R H+A Sbjct: 223 MAV-LRAGGREAITHYRVEAAFGPADRPL------AARVACRLETGRTHQIRVHMASKGS 275 Query: 174 PIIGDSKHGDLRQNRSGAEHF---GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQA 230 P +GD +G + + E GL+R LHA+ L HP TGE L L Sbjct: 276 PCLGDPVYGAAQPAAAVRERIEAAGLRRQALHAAVLGFVHPITGETLRFETPLPADMDAL 335 >UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB3_THEAS Length = 320 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 24/236 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG------QHVFTAHRLDR 55 ++YQD+ LV V+KP+G +VH + +V R + HRLD Sbjct: 96 FRVVYQDQDLVVVDKPAGLVVHPAPGHWRGTLVHGLLYRYPDLMELNGVKRPGIVHRLDA 155 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG++++ + A L + F+ ++ K Y A+ G L E + P+ + D Sbjct: 156 TTSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMAAGTLRGEGSVSLPIGRDPDNRKRMA 215 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + A+T YR + + Y LV + KTGR HQ+R H+ L HP+ Sbjct: 216 CV--PWGREALTRYRVI-----------WSRGGYSLVACQIKTGRTHQIRVHMRSLGHPL 262 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +GD +G E F L R+ LH+ +L HP TG P++ L ++ + Sbjct: 263 VGDRIYGG-----PCPEGFPLGRVFLHSWRLEFDHPRTGAPMSFICPLPPDLVRFI 313 >UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium RepID=D0J9U5_BLASP Length = 344 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ---HVFTAHRLDRPTS 58 L ILY+DE ++ +NK +G +VH + + ++ + + HR+D+ T+ Sbjct: 87 LNILYEDEDILVINKAAGMVVHPGFGNEKGTLIHGIKYHFKNNHQLYRLGLVHRIDKDTT 146 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKF-- 115 G+L++ + A + L QQF IQ++Y A+V G + +E + + + + Sbjct: 147 GLLVLAKNEYAQKYLFQQFISKTIQRKYLALVWGNIQKQEGTISGFIGRDPNNRKRMTLF 206 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 R + +VTHY+ L + V +TG+ HQ+R H +L HP+ Sbjct: 207 QRNFYRSRYSVTHYKVLERFKY-----------LTYVSCNLETGKTHQIRVHFKYLGHPL 255 Query: 176 IGDSKHGDLR-----------QNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 DS +G + + L+R LHA LS HP + Sbjct: 256 FNDSTYGGDKIFMKKYLSKKSIDFFKDSLNLLKRQALHAGSLSFIHPK-NRKCHFTCSIP 314 Query: 225 DTWMQALSQFGWRGLLPENERVE 247 + + + L + + + + E Sbjct: 315 EDFKKVLQKLRNQYFITRSPEEE 337 >UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7V3_ACIC5 Length = 355 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 31/258 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRD-----EKVVVMQTVRD------QIGQHVFTA 50 L+I+Y+D+ L+ VNKP+G +VH D +V R Sbjct: 104 LDIIYEDKDLIVVNKPAGMMVHAGSGATDSARNRGTLVNALLGRQEKLSKTGGDLRPGIV 163 Query: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELD 109 HRLD+ TSG++++ + A + LA+ F Q +I K Y A+V G + E+ ++ + ++ Sbjct: 164 HRLDKETSGLIIVARNDAAHQRLAEMFSQREIHKTYLALVHGHIAEDRGTINAAIARDVI 223 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 + R +G + A++HYR +E ++ LV + +TGR HQ+R HL+ Sbjct: 224 RRTRMTTRRTEGARTAISHYRVQRRIETRW-------GKFTLVSVRIETGRTHQIRVHLS 276 Query: 170 HLRHPIIGDSKHG------------DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPL 217 + HP++GD+ +G R+ E L R LHA++L HP + +PL Sbjct: 277 SIGHPVVGDTHYGAPTTIVLPVANRARRKQLPAPEGLSLPRNFLHAAELKFPHPRSEKPL 336 Query: 218 TIHAGLDDTWMQALSQFG 235 + A L + L Q Sbjct: 337 HLEAPLPAELVAFLEQLE 354 >UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=Q2SS88_MYCCT Length = 322 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 25/244 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDR 55 L I+YQD+ L+ +NK + VH S + + +V D HR+D+ Sbjct: 95 LNIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLASDVELSSINGELRPGIVHRIDK 154 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 T+G+L++ + + +LL++ F+ HQI K Y AIV G + + ++D P+ Sbjct: 155 QTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGVIKPNKGLIDAPIGRSQTDRKKM 214 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 K + A+T + + L++ + +TGR HQ+R H ++ HP Sbjct: 215 SVT-AKNSKHAITTFEVVERFLKN-----------TLIKCQIQTGRTHQIRVHFNYINHP 262 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++ D +G Q + LHA +L THP T + + + + L + + + Sbjct: 263 VLNDPIYGKKHQEFTDF------GQYLHAYKLKFTHPITKKEIELISPLPKEFDDKIKEL 316 Query: 235 GWRG 238 Sbjct: 317 RGEN 320 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 27/253 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRD-----EKVVVMQTVRD------QIGQHVFTA 50 L+++Y+D+ L +NKP+G +VH + +V R Sbjct: 82 LDVVYEDDDLAVINKPAGMMVHVGAGATEEERNRGTLVNALLYRFRALSEVGGDMRPGIV 141 Query: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELD 109 HRLD+ TSG++++ + A R LA+QF ++ K+Y A+V GW + + ++ P+ ++ Sbjct: 142 HRLDKETSGLIVVAKNDVAHRKLAEQFSSRRVHKKYVALVHGWPKKLKGTINLPIARDMS 201 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 + R G + A++HY +E P ++ LVE++ +TGR HQ+R H+A Sbjct: 202 RRTRMTTRGS-GGRDALSHYEVKEKIESPY-------GKFALVEVKIETGRTHQIRVHMA 253 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQ-------RLMLHASQLSLTHPFTGEPLTIHAG 222 L HP++GD+ +G + R G+ R LHA+++ L P TG+ L Sbjct: 254 SLGHPVVGDTLYGAPGELRVTKALKGMPSKMASLERNFLHAAEIELQQPATGKALRFVTK 313 Query: 223 LDDTWMQALSQFG 235 + Sbjct: 314 VPAALEDFAETLR 326 >UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW59_ALIAD Length = 314 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 98/240 (40%), Gaps = 28/240 (11%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDRPT 57 + Y+D+ ++ V+KP G +VH +V R HR+D+ T Sbjct: 91 VAYEDDDVIVVDKPRGVVVHPGAGHMRGTLVNGLLARGTPLCTLAGALRPGVVHRIDKDT 150 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFA 116 SG+++ S A R L + F H +++ Y AI G + E +D P+ + Sbjct: 151 SGLVVFAKSDRAYRALVEAFRAHDVEREYVAIAHGRMPHREGTIDMPIARDPADRQRMAV 210 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 R +G + AVTH+ L + +Y + L +TGR HQ+R HLA + HPI Sbjct: 211 R--QGGKRAVTHFEVLESF-----------AKYSYLRLRLETGRTHQIRVHLAAIGHPIA 257 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD +G + LHA L THP G L + + + L Sbjct: 258 GDPVYGPRH-------TLPIDGQALHARTLGFTHP-DGRRLRFESAVPSDMARLLDGLRQ 309 >UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNC0_HIRBI Length = 369 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 103/262 (39%), Gaps = 38/262 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD-------QIGQHVFTAHRLD 54 L++L++DE L+ +NKP+G +VH + +V HRLD Sbjct: 98 LDVLFEDEHLIILNKPAGLVVHPAPGSTSGTLVNALLHHCAGQLPGIGGVARPGIVHRLD 157 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 + TSGV++ + A L+ F+ H +++ Y A+ RG ++ + Sbjct: 158 KDTSGVMVAAKTEFAHTGLSSLFQAHFMERAYLAVTRGAPRPLLGKIETRIARSTTDRKK 217 Query: 114 KFARE------------------DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELE 155 ++ + A+T+Y+ L AT P L E Sbjct: 218 MAVVRESRLSASAEWHGESEEDYEQKGKHAITNYKVLEQFGRIDATSGLPA--ATLTECR 275 Query: 156 PKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFG----------LQRLMLHASQ 205 +TGR HQ+R H+AH+ P++GD +G R ++ +R LHA+ Sbjct: 276 LETGRTHQIRVHMAHIGAPLLGDQTYGRYRGLKAHGSGPAFETATHACKEFKRQALHAAI 335 Query: 206 LSLTHPFTGEPLTIHAGLDDTW 227 L HP TGE L + Sbjct: 336 LGFEHPVTGENLRFEVEPPEDM 357 >UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRN0_CLOBO Length = 302 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 24/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH---VFTAHRLDRPTS 58 L+I+Y+D ++ VNKP G +VH + + + V +RLD TS Sbjct: 83 LDIIYEDNDIIVVNKPKGIVVHPTKRHLNGTLSNGVLYYFNDKNENSIVRLVNRLDMDTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G++L+ ++ + L++ ++ K+Y AIV G E+ V+D P+ + + Sbjct: 143 GLVLIAKNAYSHMALSRDMQKDDFVKKYLAIVHGNFNEDSGVIDKPIYRVGEGTLKRII- 201 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D+ Q ++T ++ + + LVEL +TGR HQ+R HL+ + HPI G Sbjct: 202 -DERGQRSITLFKVIEQYK-----------NASLVELTLETGRTHQIRVHLSSIGHPIYG 249 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 DS +G+ + R LHA +L + HP G+ L + + L + + + Sbjct: 250 DSLYGEEEPQY-------IDRQALHAYKLQIPHPKDGKILKLESSLPEDMKNLIRKLSEE 302 >UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nostoc azollae' 0708 RepID=B9YI75_ANAAZ Length = 329 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 24/245 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDR 55 L+ILY+DE L+ +NKP+G +VH + D +V Q HRLD+ Sbjct: 99 LDILYEDEQLLILNKPAGLVVHPAPGHLDGTLVNALLAHCANLPGIGGVQRPGIVHRLDK 158 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 T+G + + + A + L Q + ++ Y +V G E +++ P+ Sbjct: 159 DTTGAIAIAKTDIAYQHLQAQLQAKTARREYLGVVYGVPKTESGIINLPISRHPQDRKKM 218 Query: 115 FARE-DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 ++G + A+TH++ + + Y L+ + +TGR HQ+R H A + H Sbjct: 219 AIVPTEQGGRTAITHWQIRERL-----------SNYTLIHFQLETGRTHQIRVHSAKIGH 267 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GDS +G R + L LHA QL L HP +G+ + + A T+ L Sbjct: 268 PIVGDSVYGAGR-----SVGVNLAGHALHAWQLKLQHPISGDWIQVTASPPQTFTTLLEV 322 Query: 234 FGWRG 238 R Sbjct: 323 LRRRS 327 >UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTN1_9PROT Length = 346 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 22/244 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV---FTAHRLDRPTS 58 L+I+Y+D+ ++ +NKP +VH + + ++ ++ + + HRLD+ T+ Sbjct: 84 LDIVYEDDDILVLNKPYNLVVHPGSGNANGTLLNGLLYYNKDLEKLPRGGIVHRLDKDTT 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + E+ L Q + + + Y AIV G + + V+ P+ + + Sbjct: 144 GLMVVAKNEESQNNLISQLQSKSVYREYRAIVWGQIWQNKVIQKPIGRHPRQRTKMAVTK 203 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + A T L + V KTGR HQ+R H+ PI+GD Sbjct: 204 V-NGKDAETKLEILERFNY-----------HTYVRCLLKTGRTHQIRVHMLDNNSPIVGD 251 Query: 179 SKHGDLRQNRSGAEHFGL-------QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +G + + L R LHA L L HP T + + L + + L Sbjct: 252 KDYGLKKIIPTKNMEMDLLKSIKNFDRQALHAIALGLIHPKTNKEMKWTIDLPEDMKELL 311 Query: 232 SQFG 235 S Sbjct: 312 SVIR 315 >UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=Q03WF6_LEUMM Length = 312 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 23/228 (10%) Query: 13 AVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-----HVFTAHRLDRPTSGVLLMGLSS 67 VNKP G +VH + +V + HR+DR TSG+L++ + Sbjct: 90 VVNKPQGMVVHPAAGHSSGTLVNALLHHSPLSTINGEFRPGIVHRIDRDTSGLLMVAKND 149 Query: 68 EAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAREDKGPQPAV 126 +A R L++Q + H+ Q+ Y+A+VRG E+ ++ P+ + +G + AV Sbjct: 150 KAHRSLSEQLKSHKNQRVYYALVRGEFTEDSGTIEAPIGRHKIDRKKQAVI--EGGREAV 207 Query: 127 THYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQ 186 TH+R L Y L+++ +TGR HQ+R H++++ HP++GD +G Sbjct: 208 THFRVLKRYV-----------GYTLLKVSLETGRTHQIRVHMSYIGHPVVGDPVYG---- 252 Query: 187 NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + L +LHA L+L P TG+ L+ + L D + ALS Sbjct: 253 TAQKLDGTQLNGQLLHAKTLTLEQPTTGDELSFDSPLPDYFQFALSTL 300 >UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MEC0_PARUW Length = 318 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 103/248 (41%), Gaps = 24/248 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L ILY+DE L+ +NKP+G +VH + + V Q HRLD+ Sbjct: 87 LSILYEDEHLLVINKPAGMVVHPAPGNWSGTFVNALLYYCQKLPLLPDTIRPGIVHRLDK 146 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG+L+ + E + L + F ++ K Y AI G + + P+ Sbjct: 147 GTSGLLVAAKTLETQQKLIELFASRKVYKAYLAICIGRPA-DGEIQAPIGRHPIHRKQMA 205 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 +PA++ + L + + V++E TGR HQ+R H+ + PI Sbjct: 206 VI--PTGKPAISFCKTL-----------GWSDKLSFVQIEIATGRTHQIRVHMKYRGSPI 252 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD +G + N +++ + +LHA+ L HP + E L ++ + + Sbjct: 253 LGDPLYGQISLN----QYYSVPHQLLHAAVLRFQHPISLENLEFCTPPPPEMVRLIKKID 308 Query: 236 WRGLLPEN 243 + + Sbjct: 309 PKSPYIRD 316 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 32/252 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L+++Y+DE+L +NK +G +VH + + + +V R HRLD Sbjct: 89 LDVVYEDEYLAIINKKAGMIVHPGFGNPEGTLVNAILYRFGENLSSGKEFNRPGIVHRLD 148 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 R TSG++++ + L+ F + +I+K Y AI G E+ ++ L Sbjct: 149 RGTSGLIIIAKNDLTHAKLSDMFARREIKKTYFAITTGIPEPEKGEIETYLARSNKNP-- 206 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + + A+THY+ + T + LVE+ P TGR HQ+R H AH+R+ Sbjct: 207 RTICVTNEGRYALTHYKTIKTWHY-----------FALVEINPATGRMHQIRVHFAHIRY 255 Query: 174 PIIGDSKHGDLRQNRSGAEH-----------FGLQRLMLHASQLSLTHPFTGEPLTIHAG 222 PI+GD + R +S L+R LH+ +L HP TG P+++ A Sbjct: 256 PILGDLLYNSRRYVQSLVPQNMKKKVTELLVNHLRRQALHSWKLEFFHPITGYPISVSAP 315 Query: 223 LDDTWMQALSQF 234 + D L+ Sbjct: 316 IPDDIQYTLNWL 327 >UniRef50_Q8DBG5 tRNA pseudouridine synthase C n=54 Tax=Gammaproteobacteria RepID=TRUC_VIBVU Length = 245 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 143/240 (59%), Positives = 175/240 (72%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEI+YQDE+ VAVNKP+G LVHRSWLD+ E VMQT+RDQIGQHVF HRLDRPTSGV Sbjct: 1 MLEIVYQDEYFVAVNKPAGMLVHRSWLDKHETQFVMQTLRDQIGQHVFPLHRLDRPTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L+ LSSE + F ++ K YHAIVRGW+ EE LDY L ELDKIADKFA ++K Sbjct: 61 LVFALSSEVASQVMPMFAGQEMSKTYHAIVRGWIEEEGELDYALKVELDKIADKFASQEK 120 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 Q A+T Y+ LA VE+P +T ++PTTRYGL+EL+PKTGRKHQLRRH+AHLRHPI+GD+ Sbjct: 121 EAQDAITLYKPLAKVEVPYSTSKFPTTRYGLMELKPKTGRKHQLRRHMAHLRHPIVGDTT 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 HGD + N+ E F RL+LHAS+L HP+T + + I A +D W Q +F W L Sbjct: 181 HGDGKHNKLFREEFDAPRLLLHASELRFVHPYTQQEVVIRAEVDKVWQQLFERFEWPSTL 240 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 31/254 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-------DQIGQHVFTAHRLD 54 L+I+Y+D+ L+ +NKP+G +VH + +V D + + HR+D Sbjct: 110 LDIVYEDDVLLVINKPAGLVVHPGHGNYTGTLVNALAYYLREDPEYDPMDPSLGLVHRID 169 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 + TSG+L++ +EA L +QF + Y A+V G + + +L Sbjct: 170 KDTSGLLVVAKRAEAKSDLCKQFYYKTTHRSYRALVWGRFDYPIGTITGNIGRDLKDRLQ 229 Query: 114 KFAREDKG--PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 G +PAVTHY+ L + +E +TGR HQ+R H+ H+ Sbjct: 230 MAVFPPDGDIGKPAVTHYQVLEELAY-----------VSWIECRLETGRTHQIRAHMKHI 278 Query: 172 RHPIIGDSKHGDLRQNRSGAEHF----------GLQRLMLHASQLSLTHPFTGEPLTIHA 221 H + D ++G + R R LHA L HP TG + + Sbjct: 279 GHTLFADERYGGDQILRGNNTANYRRFVQNCLAICPRQALHAKTLGFRHPVTGVEMQFDS 338 Query: 222 GLDDTWMQALSQFG 235 + L ++ Sbjct: 339 DIPADLTTLLERWR 352 >UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Faecalibacterium prausnitzii RepID=C7H7W3_9FIRM Length = 314 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 103/246 (41%), Gaps = 27/246 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L+I+Y+D L+ VNKP G +VH + + D +V + HR+D Sbjct: 80 LDIIYEDAHLLVVNKPKGMVVHPAPGNPDGTLVNALLWHCKGSLSGIGGEIRPGIVHRVD 139 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 + TSG+L++ L+QQ H +++ Y+ IV G +E ++ L Sbjct: 140 KDTSGLLVVAKDDATHIGLSQQMAVHSVERAYNTIVYGGFAQDEGFVESNLGRSKTDRKK 199 Query: 114 KFARE--DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 + + A T Y+ L + + ++E KTGR HQ+R H+A + Sbjct: 200 MAVYPASEPHTKYAYTGYKVLERL-----------GEFTMLECRLKTGRTHQIRVHMASI 248 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 HP+ GD +G L LHA L HP TGE L + L D + + L Sbjct: 249 HHPVAGDPVYGPHNC------ITSLHGQCLHAKTLGFIHPITGEHLRFDSELPDYFTRFL 302 Query: 232 SQFGWR 237 + R Sbjct: 303 TTLRQR 308 >UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacteria RepID=A4WSV2_RHOS5 Length = 349 Score = 293 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 105/257 (40%), Gaps = 40/257 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L ++++D L+ ++KP G +VH + +V + HR+D Sbjct: 90 LSVVWEDADLIVIDKPVGMVVHPAPGQWTGTLVNALLHHCGASLSGIGGEKRPGIVHRID 149 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA---------------- 98 + TSG+L++ + A + LA QFE H +++RY A+V G Sbjct: 150 KDTSGLLVVAKTDRAHQGLAAQFEAHTVERRYLALVHGVPEPSDPRLRGIRGVSFEPGGV 209 Query: 99 -VLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPK 157 + + + + G + AVT R L P A LVE + Sbjct: 210 LRIATGIARHRTDRQRQAVTFE-GGRHAVTRARLLERFGTPPA--------AALVECRLE 260 Query: 158 TGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGA-------EHFGLQRLMLHASQLSLTH 210 TGR HQ+R H++H+ H +IGD +G R+ + A R LHA+ L H Sbjct: 261 TGRTHQIRVHMSHVGHGLIGDQTYGGRRKLSAKAVGAEAAQAAEAFPRQALHAATLGFCH 320 Query: 211 PFTGEPLTIHAGLDDTW 227 P TGE L+ + L Sbjct: 321 PVTGEDLSFESPLPADM 337 >UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZH07_BREBN Length = 306 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 108/237 (45%), Gaps = 25/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV---MQTVRDQIGQHVFTAHRLDRPTS 58 L I Y+DE L+ + KP+G +VH + + + + +RLD+ TS Sbjct: 81 LSIRYEDEDLMVIAKPAGLVVHPTGNHPSGTLANGMIAYWKKRGENRKFRAVNRLDKDTS 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAR 117 G++++ + A ++ + +Q+ Y AIV+G + ++ ++ P+ + + R Sbjct: 141 GLMIVAKNQWAHEQFSRMQQIRTLQRTYRAIVQGIVESDDGTINTPIGLAENSFITRQVR 200 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q AVTHYR LA E VE++ +TGR HQ+R H++ HP+ G Sbjct: 201 PD--GQTAVTHYRVLARGE-----------GMSFVEVKLETGRTHQIRVHMSSEGHPLAG 247 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D +G E + R LHA LS HP +G ++ L + Q QF Sbjct: 248 DDLYGG--------EREHIGRQALHAWGLSFVHPRSGLAMSWEEPLPNDMEQLAQQF 296 >UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacterium RepID=A3RGY8_9BACT Length = 353 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 14/241 (5%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 LE++++D+ ++ +NKP +VH + ++ HRLD TS Sbjct: 110 LEVIFEDDAILVLNKPPKLVVHPAAGHWSGTLLNGLLAYAPTLIDVPRAGIVHRLDADTS 169 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + A L +Q + + + Y A+V G + V+D + + Sbjct: 170 GLMVVAKTLAAQTDLVRQLQSRTVTREYWALVLGVPSQRGVIDAAIGRDPRNPLRFKVST 229 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + +PA THY L + + + +TGR HQ+R HL H+ HP+IGD Sbjct: 230 TEAAKPARTHYATLDSTKN-------AGADISWLACRLETGRTHQIRVHLEHVGHPLIGD 282 Query: 179 SKHGDL--RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLT-IHAGLDDTWMQALSQFG 235 + + A R LHA +L+L HP + + L H+ Q + + G Sbjct: 283 PVYRRRLPPRGEPAARWKEFDRQALHACRLALDHPVSRQRLNWFHSPA-ADLAQLMHELG 341 Query: 236 W 236 + Sbjct: 342 F 342 >UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4FN11_PELUB Length = 326 Score = 292 bits (749), Expect = 8e-78, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 27/251 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-------HVFTAHRLD 54 L+I+Y+D+ L+ +NKP+G ++H + DE +V ++ HR+D Sbjct: 82 LQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALMHYNKDSLSTIGDELRPGIVHRID 141 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 + TSG++++ ++E L+ QF +H I + Y ++ G L +D + Sbjct: 142 KDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIWGKLRPSSGKIDTFITRSSKNRQM 201 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K + A+T+Y+ + E LVE +TGR HQ+R H+ H+ + Sbjct: 202 MEVSNSK-GKRAITNYKTIEIFENDKTPT------LSLVECRLETGRTHQIRVHMTHMGN 254 Query: 174 PIIGDSKHGDLRQNRSGAEH---------FGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 I+GD G ++ ++ + L R LHA L HP T E + + L Sbjct: 255 SIMGD---GKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLGFIHPRTNEEMVFTSILP 311 Query: 225 DTWMQALSQFG 235 L Sbjct: 312 QELENILVLLR 322 >UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D n=4 Tax=Buchnera aphidicola RepID=RLUD_BUCAP Length = 315 Score = 292 bits (749), Expect = 8e-78, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 23/243 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD---QIGQHVFTAHRLDRPTS 58 L +Y+D ++ +NKP G +VH ++D ++ R HRLD+ TS Sbjct: 84 LNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISSIPRCGIIHRLDKDTS 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G++++ + + L ++ +I ++Y I++G ++ +++YP++ K Sbjct: 144 GLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISGGIVNYPIMRHPFKRI--CMTT 201 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D + ++THY+ + + + V +TGR HQ+R H+ H+ +P++GD Sbjct: 202 DSLGKKSITHYKIINRFKF-----------HTHVSFRLETGRTHQIRVHMLHIGYPLLGD 250 Query: 179 SKHGD-------LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +G ++NR+ F L R LHA + HPFT + ++ A L L Sbjct: 251 PLYGGIDYGCNYFQENRNIYRKFNLFRQALHADYIEFIHPFTQKVMSWSASLPQDMKDIL 310 Query: 232 SQF 234 Sbjct: 311 LYL 313 >UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNZ6_9DELT Length = 535 Score = 292 bits (749), Expect = 8e-78, Method: Composition-based stats. Identities = 73/270 (27%), Positives = 121/270 (44%), Gaps = 30/270 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ------IGQHVFTAHRLDR 55 L+I+Y D +V +NKP+G VH S D +V Q HRLD+ Sbjct: 83 LDIVYMDREMVVLNKPAGLSVHPSSSDPAPTLVHYLLYACPGLRLMTDRQRPGIVHRLDK 142 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 T+G+++ L+ EA LA QF ++ K Y A+V G L +E +++ PL + A Sbjct: 143 DTTGLMVAALNQEAKEDLAGQFAGRRVHKTYLALVCGALKQDEGIINVPLARDQQSRAR- 201 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + A T Y+ L P+ + LV+++ TGR HQ+R H +HL HP Sbjct: 202 -VAPSREGRSARTAYKVLKR---------DPSGLWSLVQVQIFTGRTHQIRVHFSHLNHP 251 Query: 175 IIGDSKHGDLRQNRSGAEH----FGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQA 230 ++GD +G +R G + +R +LH+S L + HP + + L + +++ Sbjct: 252 VLGDRIYGGTDWDRFGWKKRFLSRLAKRQLLHSSCLGIMHPVSRQWLEFISRPPRDFIRT 311 Query: 231 LSQFGWRGLLPENERVEFSAPSGQDGEISS 260 L + + +G G S Sbjct: 312 LLWL--------VRKCQKVVVTGSAGCGKS 333 >UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S0A2_9RHOB Length = 356 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 100/265 (37%), Gaps = 40/265 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI-------GQHVFTAHRLD 54 L ++++D L+ V+KP G +VH + +V + HR+D Sbjct: 99 LTVVWEDADLIVVDKPVGMVVHPAPGSYTGTLVNALLHHCGDTLSGVGGAKRPGIVHRID 158 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL---------------MEEAV 99 + TSG+L++ + A LA QFE H + + Y A+V G + Sbjct: 159 KDTSGLLVVAKTDRAHHGLAAQFEAHSVTRHYIALVHGAPNAADPRLRGIRGVSFEPGGI 218 Query: 100 --LDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPK 157 + L + D + AVT R L + P LVE + Sbjct: 219 VCIATNLARHKTDRQRQAVLFDS-GRHAVTRVRVLESYGTPPV--------AALVECWLE 269 Query: 158 TGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGA-------EHFGLQRLMLHASQLSLTH 210 TGR HQ+R H++H H ++GD +G R+ A R LHA+ L H Sbjct: 270 TGRTHQIRVHMSHAGHALLGDQTYGGRRKVAPKAVGEAVAQAANDFPRQALHAASLGFVH 329 Query: 211 PFTGEPLTIHAGLDDTWMQALSQFG 235 P +GE L + L + Sbjct: 330 PVSGEELLFTSPLPADMAALTAALR 354 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 106/256 (41%), Gaps = 28/256 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-------HVFTAHRLD 54 L+ILYQDEWL VNKP+ +VH + + +V + HRLD Sbjct: 109 LDILYQDEWLALVNKPADMVVHPAKGNWSGTLVNALQWHFREHLSTGAGHLRAGIVHRLD 168 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIAD 113 + TSGV+L+ R LA QFE ++ K Y AI G L ++ ++ L Sbjct: 169 KDTSGVILVAKDDLTHRDLAMQFESRKVFKEYVAIAAGELERDSDYIEGALKMHPYDRLK 228 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 D + A+++Y L + LV+++P+TGR HQ+R HL H+ Sbjct: 229 MIVSTDPDAKHALSYYEVLERFR-----------GFTLVKVQPRTGRTHQIRVHLLHVGC 277 Query: 174 PIIGDSKHGDLRQ---------NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 ++ D +G Q + L R LHA +L HP TG+ + A L Sbjct: 278 AVLADKIYGGRAQVKLSEIAPGTPPAEDEVLLGRQALHAFRLRFQHPRTGQWIEAEAPLP 337 Query: 225 DTWMQALSQFGWRGLL 240 + L + Sbjct: 338 PDMRRTLDALRQHRAI 353 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 106/286 (37%), Gaps = 54/286 (18%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ---------------- 45 L+++++ + L+ VNKP+G +VH + R +V G+ Sbjct: 74 LDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVDGGEVAADDERDEVSEDEVG 133 Query: 46 ----------------HVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAI 89 HRLD+ TSG+L++ A + LA+QF+ H + +RY AI Sbjct: 134 LSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRAHQPLAEQFKAHTVDRRYRAI 193 Query: 90 VRGWL-MEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTR 148 V G + ++ + + + + A THY + T Sbjct: 194 VWGRFAPSDGTIEGAIGRDPHHRQRMAVVPEDEGKWARTHYETVET-----------HAH 242 Query: 149 YGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFG----------LQR 198 +VE E +TGR HQ+R H HP++GD K+G R L Sbjct: 243 TSVVEFELETGRTHQIRVHARAQGHPLLGDPKYGGQRVRYGTQSGTRRTFYDQLFETLPH 302 Query: 199 LMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLPENE 244 LHA +L HP T E L A W + L + + Sbjct: 303 PALHAYRLGFDHPTTEERLRFEADPPPAWRRVLRELRQEEGAGTTD 348 >UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=A5IBH6_LEGPC Length = 321 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 22/245 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD---QIGQHVFTAHRLDRPTS 58 ++I+Y+D ++ VNKP+G +VH +++ +V Q+ HRLD+ T+ Sbjct: 87 IQIIYEDSEVIVVNKPAGLVVHPGAGNKEHTLVNALLHHCPELQLLPRAGIIHRLDKDTT 146 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+L++ + + L +Q + +I++ Y +V G+++ +D + Sbjct: 147 GLLIVAKNLISHTSLIRQMQNREIKRHYLTLVHGYVISGGTIDTGFGRHPKNRLKMAVTD 206 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + AVTHY + + L+ + TGR HQ+R H+ ++ HP++GD Sbjct: 207 --FGRQAVTHYNINKHYK-----------DFTLLNVSLMTGRTHQIRVHMNYINHPVVGD 253 Query: 179 SKHGDLRQNRSGAEHFGL------QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G + A+ L +R LHA +S HP +T++A L D + L+ Sbjct: 254 QLYGGRMKFPPNADEAILSVLKQFKRQALHACSISFCHPVKNTEITLNALLPDDFELLLN 313 Query: 233 QFGWR 237 Sbjct: 314 TLDQH 318 >UniRef50_B8CQ92 Pseudouridine synthase n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CQ92_SHEPW Length = 278 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 126/236 (53%), Positives = 160/236 (67%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +EIL++D+ +VA++KP+G LVHRS+L R E+ MQ RD++G HVF HRLDRPTSG+L Sbjct: 27 IEILFEDDDVVAIHKPAGLLVHRSYLARRERFFAMQLTRDKVGCHVFPVHRLDRPTSGIL 86 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L SSE L +QF H I K Y AIVRG + E A LDY L EELD +ADK +K Sbjct: 87 LFAKSSEMANALCEQFAAHSIDKEYLAIVRGNMHEAATLDYALKEELDDVADKDVDPNKA 146 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A+T Y+ L E+P A+GRY T+RY LV L P TGRKHQLRRH+AHLRHPI+GD+ H Sbjct: 147 AQDAITSYKPLLNSEIPYASGRYATSRYALVHLSPHTGRKHQLRRHMAHLRHPILGDTTH 206 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 GD +QN+ EHFG+ RL L A +LS HP TGE + + L+ W+ + GW Sbjct: 207 GDGKQNKFFREHFGINRLWLIAKKLSFNHPRTGERVAVETELEQEWITLFDELGWD 262 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 28/242 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-------DQIGQHVFTAHRLD 54 L I+Y+D+ ++ +NKP G +VH S + +V + HR+D Sbjct: 76 LNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLHHTDTLSTHNDDPLRPGILHRID 135 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 + TSG++L+ ++EA ++LAQ + H I++ Y A+V G L + V+D P+ Sbjct: 136 KDTSGLILVAKTNEAHKILAQDLKSHDIKREYIALVEGVLDHNKGVIDAPIARHPKIRTK 195 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 +PA+TH+ + T + L+ + +TGR HQ+R HLA+++H Sbjct: 196 MAVV--ATGKPAITHFEVMRTFR-----------DHTLLHCKLETGRTHQIRVHLAYIKH 242 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P+ GD +G + +LHA +L HP T + + + A L + L Sbjct: 243 PVTGDPLYGTKAKILK-------DGQLLHAFRLEFVHPITKKVMMLEAPLPPEFESYLVT 295 Query: 234 FG 235 G Sbjct: 296 LG 297 >UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAZ3_DESAH Length = 313 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 111/248 (44%), Gaps = 27/248 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ--------IGQHVFTAHRL 53 L+ L++D+W+V VNKP+G +VH + ++ HRL Sbjct: 81 LDFLHEDQWIVVVNKPAGMVVHPGAGNSSGTLLNALLHHFPSLTDTHCDPPLRGGIVHRL 140 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIA 112 D+ TSG +++ S +A L ++F +++KRY A+ G + E + + P+ Sbjct: 141 DKDTSGTIVVAKSKKAYEFLQKEFRFRRVEKRYIALATGIITETQGRITLPIGRHPIHRK 200 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 ++ +PA T +R L + L+++ KTGR HQ+R H L Sbjct: 201 RMAVNTER-ARPAETLWRVLGQ-----------MAGHTLLDVGLKTGRTHQIRVHFRALG 248 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 HP+ GD +G G + R MLHA L HP++G+ + A L + ++ L Sbjct: 249 HPLAGDRVYG-----FRGKQSARAPRQMLHAGTLGFRHPWSGKRVEFTAPLPEDMVEVLE 303 Query: 233 QFGWRGLL 240 + RG L Sbjct: 304 RLN-RGPL 310 >UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT n=5 Tax=Bacillus RepID=YHCT_BACSU Length = 302 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 23/236 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+IL++D ++ +NKP+G H + + + + QI V HRLD+ TS Sbjct: 83 LDILFEDNHMLIINKPAGIATHPNEDGQTGTLANLIAYHYQINGETCKVRHVHRLDQDTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAR 117 G ++ A +L QQ E+ +++ Y AI G L ++ ++ P+ + + Sbjct: 143 GAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKLRTKKGTINSPIGRDRSHPTRRRV- 201 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 G Q AVTH++ +A+ R LVELE +TGR HQ+R HLA L HP+ G Sbjct: 202 -SPGGQTAVTHFKVMAS---------NAKERLSLVELELETGRTHQIRVHLASLGHPLTG 251 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 DS +G + L R LHA+++ HP T E + A Sbjct: 252 DSLYGGGSK--------LLNRQALHANKVQAVHPITDELIVAEAPFPADMKNLCRT 299 >UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ4_9CHLO Length = 357 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 64/261 (24%), Positives = 104/261 (39%), Gaps = 37/261 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------------QHVF 48 L+++++D+ LV VNKP G +VH S +V + Sbjct: 103 LDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSLVNALLFHCNERSNRGDDASKMIDVPRLG 162 Query: 49 TAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEE 107 HR+D+ TSG+L+M + A L QF +++RY AIV G E +D P+ + Sbjct: 163 VVHRIDKGTSGLLVMAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPARESGRIDAPIGRD 222 Query: 108 LDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 + A++++ A + LVE + +TGR HQ+R H Sbjct: 223 PADRLKMAIVRGATGRQAISNFGVRARL---------VRGNASLVEWQLETGRTHQIRVH 273 Query: 168 LAHLRHPIIGD--------------SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFT 213 + HPI+GD + G + + R MLHA L HP T Sbjct: 274 AREMGHPIVGDEAYGGGGSAAAEFLRRDGAMSAAAAREIVAKCARPMLHARSLGFRHPVT 333 Query: 214 GEPLTIHAGLDDTWMQALSQF 234 GE ++ ++ A ++ Sbjct: 334 GEEISFAVEPPPDFVDAFTEL 354 >UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3Y9_9BACT Length = 345 Score = 289 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 105/238 (44%), Gaps = 24/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDR 55 +++Y+D+ ++ VNKP+G +VH D +V R HRLD Sbjct: 116 FDVVYEDDDVIVVNKPAGVVVHPGAGRPDGTLVNGLMFRYPEIGRIGDSVRPGIVHRLDV 175 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG++++ S A R L + F+ H++ K Y + G L E +D P+ + Sbjct: 176 GTSGLMVVARSDAAFRGLTEAFQAHEVLKEYLGLGVGALKAPEGTVDAPIGRDPRNRLKM 235 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 D + AVT Y+ L T R L+ + TGR HQ+R H+ L Sbjct: 236 CVSWD--GRDAVTDYKVLWT-----------RARCNLIRVRLHTGRTHQIRVHMRALGCS 282 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 + GD+ +G + A+H R+ LH+ +L HP +GE L A L + AL Sbjct: 283 LDGDTLYGP----KDPAQHILKDRVFLHSWRLGFRHPVSGERLEFRAPLPPELIAALR 336 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 28/258 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L+ILY DE+L +NK + +VH + + HRLDR Sbjct: 91 LDILYDDEYLCVINKTANMIVHPGRGNYRGTLAGALQFHFDSLSDVAGQYRAGIVHRLDR 150 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSGVL++ + + L++QFE+ ++K YHAIV G + + ++ + Sbjct: 151 DTSGVLVVAKDNTVHQHLSRQFEERSVEKEYHAIVWGEMQFDADYVETYVRVSFRNRERM 210 Query: 115 FARED-KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + A T Y + V+L+P+TGR HQLR H+ HL H Sbjct: 211 MVCPPGDNARQAATFYEVQQRFR-----------GFTYVKLQPQTGRTHQLRVHMHHLGH 259 Query: 174 PIIGDSKHGDL---------RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 PII D + + A+ + R LHA +L+ HP T + + A L Sbjct: 260 PIIADRLYEGKTCVKLSDILPETPEEADETLIDRQALHARRLAFNHPVTKKRMVFEAPLP 319 Query: 225 DTWMQALSQFGWRGLLPE 242 + + L + P+ Sbjct: 320 ADFQKTLDTLKTHAIKPK 337 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 289 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 22/241 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDR 55 L+++Y+DE L+ V+K +G +VH + + +V R HRLD+ Sbjct: 83 LDVVYEDEHLLVVDKAAGMVVHPAPGNWTGTLVNALLGRGEPLAEGGGEDRAGLVHRLDK 142 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADK 114 TSG+L++ S A R L+ Q+ +RY A+ G L EE ++ P+ + Sbjct: 143 DTSGLLVVAKSDAAHRTLSSALAARQVTRRYAAVCWGHLAEERITVEKPIARDPRDRTRM 202 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + + T + LA + L+ TGR HQ+R HLA HP Sbjct: 203 AIV--QSGKASRTDFTRLARFDSVD-----------LLRAHLHTGRTHQIRVHLASTGHP 249 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD + +R LHA+ L HP +G+ + + + L +L+ Sbjct: 250 VVGDDTY--GGGGGRRLALLPPRRHFLHAAWLRFRHPISGDLIDLRSPLPADLRTSLAAL 307 Query: 235 G 235 G Sbjct: 308 G 308 >UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAM3_PHATR Length = 325 Score = 289 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 21/239 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-----DQIGQHVFTAHRLDRP 56 L+I+++DE ++ +NK + +VH + + D VV + I HRLD+ Sbjct: 73 LDIIFEDEHMIVINKAANMVVHPAAGNWDGTVVNALAYYLANRSESISFRPGIVHRLDKG 132 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 T+GVL++ +S+ L+ F Q++K Y AI G + V+D P+ Sbjct: 133 TTGVLVVAKTSQTLATLSNFFAARQVKKTYMAITVGNPGKHVVIDKPIGRHPLHRQRMRV 192 Query: 117 REDK-----GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHL 171 D + A+++ LA + LV++ +TGR HQ+R HL Sbjct: 193 VPDPHQKNSTGRRALSYVDTLA-----------FDGKLSLVQVRIETGRTHQIRVHLQDR 241 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQA 230 PI GD +G N+ ++ + R +LHA +L + HP TGEP+ A L D + Sbjct: 242 HTPIYGDDIYGLADWNKKLSKTHRIVRPLLHAYKLEINHPVTGEPMVFKASLADDMKRI 300 >UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii RepID=B6J6C4_COXB1 Length = 327 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 22/243 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L+++Y+DE L+ +NKP G +VH RD+ ++ D HRLD+ TS Sbjct: 89 LDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLHYDPSLSVVPRAGIIHRLDKDTS 148 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+LL+ + + L + + QI + Y AIV+G L+ ++ P+ Sbjct: 149 GLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLISGRTIEAPVGRHPIHRTRMAVV- 207 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + +PA+TH+R + + + ++ +TGR HQ+R H+AH+ HP+ GD Sbjct: 208 -EFGRPAITHFRIIKRYRA-----------HTHIRVQLETGRTHQIRVHMAHIHHPLAGD 255 Query: 179 SKHGDLR------QNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +G + L+R LH + L +HP P+ HA L L Sbjct: 256 PVYGSHVGIPVHLSDPLQTALKTLKRQALHGATLQFSHPVDQRPMACHAPLPADMAHLLE 315 Query: 233 QFG 235 Sbjct: 316 CLE 318 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 19/246 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG------QHVFTAHRLDR 55 + I+Y+DE + V KP G +VH S +V + + HRLD+ Sbjct: 82 INIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYHIKDLSSIGGVERPGIVHRLDK 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 T+GV+++ ++ A R L +QF++ + +K Y +V+G + ++ +D P+ Sbjct: 142 ETAGVMVIAKNNTAHRNLVRQFQERKTEKFYKVLVKGLVKKDYGAIDTPIARHPVDRKRF 201 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + R K + A+T Y L E L++++ TGR HQ+R H A + HP Sbjct: 202 WVR--KEGKEALTEYWVLKRYEKY---------EITLLKVKIHTGRTHQIRVHFASIGHP 250 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRL-MLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 ++GD +G + + ML A L HP GE + +T+ S Sbjct: 251 VLGDRTYGFKSSSVPKELLSLMGECNMLIAYHLGFYHPTKGEWMVFEIEEPETFKSVYSW 310 Query: 234 FGWRGL 239 Sbjct: 311 LEEHSP 316 >UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM1_DESBD Length = 526 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 105/264 (39%), Gaps = 29/264 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD-----QIGQHVFTAHRLDRP 56 L + + DE LV VNK VH + + +V Q G+ HRLD+ Sbjct: 82 LNVFFADEDLVVVNKTPAMTVHPAPSVAEPTLVHRVAHHFPALLSQSGERPGIVHRLDKD 141 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 TSG++++ LS A L Q F ++ K Y A+V G + L I + A Sbjct: 142 TSGLIVLALSESARLSLTQAFASREVYKEYLALVAGVPDSSGTVSLALGRHP-SIKTRMA 200 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 ++G + A T + L + LV + TGR HQ+R H+A L HP++ Sbjct: 201 VVERGGRAAETRFELLWSAADRS---------ASLVRVRIMTGRTHQIRVHMAALGHPLL 251 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD+ + D R MLHA QL HP + E + A D ++Q L + Sbjct: 252 GDAVYADK------QTAARAPRQMLHAWQLRFEHPRSFESMEFCAPPPDDFLQVLRELCR 305 Query: 237 RGLLPENERVEFSAPSGQDGEISS 260 +G G S Sbjct: 306 ERAC--------IGLTGAVGSGKS 321 >UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SM47_9BACT Length = 302 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 23/240 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR----DQIGQHVFTAHRLDRPT 57 +EI+Y + +NKP+G VH + D+ +V D HRLD+ T Sbjct: 81 IEIIYDCDEFAVINKPAGITVHPAPGHADDTIVNAMLAEFDITDDNDLRPGIVHRLDKDT 140 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFA 116 SG++++ + ++ +L++ F I KRY A+ G E E ++ P+ Sbjct: 141 SGLMIVAKNRKSREVLSKVFADRDIDKRYLAVCWGKPKELEFTIEQPIGRHYKDRKRMCV 200 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 RED + + + R L L E+ TGR HQ+R H++H P+ Sbjct: 201 RED--GRYSKSGVRVLKQ-----------NNNAFLAEIRIFTGRTHQIRVHMSHAGFPLA 247 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD +G + + ++R LH+ +L+ PFTGE + + L + + Sbjct: 248 GDVVYGHRQSLK-----LPIKRQALHSFRLAFVSPFTGEDMVFESPLPLDMKELIIGLKL 302 >UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UHX8_RHOBA Length = 334 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 71/257 (27%), Positives = 106/257 (41%), Gaps = 39/257 (15%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQI------GQHVFTAHRLDR 55 L+ILY+D+ LV +NKP+G +VH + + + R Q HRLDR Sbjct: 79 LDILYEDDGLVVINKPAGMVVHPARGNWTGTLTSALAFRFQSLSDVGGPTRPGIVHRLDR 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADK 114 TSGV+++ ++ LA Q+ +QK Y AI G L + + + + + Sbjct: 139 DTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAITFGRLDRDRDWIHASIGRHPYQRDKQ 198 Query: 115 FARE-DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 RE + A T Y + R V++ PKTGR HQ+R HLAH+ Sbjct: 199 AIREGHATSKTASTFYEVVER-----------HGRVTRVDVRPKTGRTHQIRVHLAHIGC 247 Query: 174 PIIGDSKHGDLRQNRSGA--------------------EHFGLQRLMLHASQLSLTHPFT 213 PI+ D +G + E L R LHA L+ T+P T Sbjct: 248 PILCDRLYGGHSELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQALHAKALTFTNPQT 307 Query: 214 GEPLTIHAGLDDTWMQA 230 G+ +T+ A L Sbjct: 308 GKEMTLTAPLPPDLQAV 324 >UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepID=A0Q1S9_CLONN Length = 301 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 24/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH---VFTAHRLDRPTS 58 L+++Y+D+ +V +NKP G +VH + ++ + + V +RLD TS Sbjct: 83 LDVIYEDKDIVVINKPKGIVVHPTKRHQNGTLSNGVLYYFKEKNENSIVRLVNRLDMDTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G++L+ ++ + L++ ++ K Y AIV G L E+ V++ P+ + + Sbjct: 143 GLVLIAKNAYSHMALSRDMQKDDFVKSYLAIVHGNLKEKSGVINKPIYRVGEGTLRR--V 200 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D+ Q +VT ++ + + E LVEL +TGR HQ+R HL+ + HPI G Sbjct: 201 IDERGQRSVTRFKVVESYEDAD-----------LVELTLETGRTHQIRVHLSSIGHPIYG 249 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 DS +G EH + R LHA +L + HP G L + + L D +S+ Sbjct: 250 DSLYGK-------EEHEYIDRQALHAYKLQIPHPKDGRILKLESDLPDDMKNLISKL 299 >UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=C6J6E3_9BACL Length = 321 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 25/250 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 +I+Y+DE L+ VNK +G +VH + + VV HRLD+ TS Sbjct: 85 FDIVYEDEALLIVNKAAGLIVHPTHGHYTGTLANGVVYYWQEKGEKFRFRPVHRLDQETS 144 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAR 117 G++ + ++ + +++Q ++ K+Y A+V G E +D P+ + + + Sbjct: 145 GLIAIAKNAYVHQHISEQLIAGEVTKKYTALVHGCPAVPEGTIDGPIDRDPAEPHRRIVT 204 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 P++T+Y+ VEL TGR HQ+R H+ + HP+IG Sbjct: 205 PS--GYPSLTYYKVAEAY-----------GDGARVELRLGTGRTHQIRVHMTSIGHPLIG 251 Query: 178 DSKHG--------DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 D +G + R + R LHAS+L HP TGE LT + L + ++ Sbjct: 252 DKFYGMPGLAELPAPARERIARLDAAIGRQALHASELGFRHPLTGEALTFKSELPEDMLK 311 Query: 230 ALSQFGWRGL 239 + Sbjct: 312 LEAMLRRASF 321 >UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7T3_9PLAN Length = 355 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 104/248 (41%), Gaps = 25/248 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ------IGQHVFTAHRLDR 55 L+IL++DE L+AVNKP G +VH + + Q HRLDR Sbjct: 115 LDILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSALAFHFQQLSTVGGQHRPGIVHRLDR 174 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADK 114 TSGV+++ + LA QF K Y AI G + V+ P+ Sbjct: 175 DTSGVIIVAKTDPVHFSLAAQFADRTTAKEYFAITAGVPDRDRDVVSQPIGIHPFHREKM 234 Query: 115 FARE-DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 R + A T + L A VE PKTGR HQ+R HLAH+R Sbjct: 235 AIRPGHSTSRDAETMFHVLERFAQHAA-----------VECLPKTGRTHQIRVHLAHVRT 283 Query: 174 PIIGDSKHGDLRQN------RSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 P++ D +G + R G+ L R LHA +LS+ HP TGE LTI A L Sbjct: 284 PVLCDKLYGGRAEITQGELVRDGSTEVVLNRQALHARKLSINHPKTGERLTIEAPLPADL 343 Query: 228 MQALSQFG 235 + L Sbjct: 344 QRVLDLLR 351 >UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales RepID=Q2GGY1_EHRCR Length = 337 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 101/251 (40%), Gaps = 24/251 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 + ++Y+D ++ +NK G VH + +V HRLD Sbjct: 96 ISVVYEDHDIIIINKAPGITVHPGAGTNNNTLVNALVAHYGNSLSHVGKATRPGIIHRLD 155 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 + TSG++++ + ++ L+ + QI+K Y A+V G + + + + + Sbjct: 156 KDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAVVWGLPNPKSNTIKNYICVKPNNKQM 215 Query: 114 KFARE-DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + A+T Y+ + + L++ TGR HQ+R H++++ Sbjct: 216 MTVTHLPHKGKLAITEYQTQKSF----------SNIASLIKCRIHTGRTHQIRVHMSYIG 265 Query: 173 HPIIGDSKHGDL-----RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 + IIGD K+G + + L+R LHA +L THP + + H+ + + Sbjct: 266 NSIIGDQKYGKNNSKSVKYAKQSTIINTLKRQALHAYKLGFTHPTSNTYIEFHSYIPNDI 325 Query: 228 MQALSQFGWRG 238 + + Sbjct: 326 QMLIDELEQLS 336 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 71/266 (26%), Positives = 116/266 (43%), Gaps = 29/266 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDR 55 LEIL++D+ ++ +NK G +VH + +V + HRLDR Sbjct: 87 LEILFEDDDVLVLNKAPGVIVHPGAGHEEGTLVHGLLAHCSRLASRGAPRRPGIVHRLDR 146 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG L++ S A L +QF+ H++ K Y A+V G + + + + Sbjct: 147 GTSGALMVAKSERAYLELIRQFKHHEVGKEYLALVYGTMAGASGEIRTGMGRHPVDR-KR 205 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 A +KG + AV+ ++ L+ + KTGR HQ+R HL+H++HP Sbjct: 206 MAVLEKGGREAVSQWKV-----------AVAWGEVSLLRVVIKTGRTHQIRVHLSHMQHP 254 Query: 175 IIGDSKHGDLRQNRSGAEHFGL-------QRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 ++GD +G ++ + L R MLHA L+ HP +G L+ A L + Sbjct: 255 VVGDETYGGGKRKARAVKSDVLRELLMEVDRQMLHAVGLAFRHPVSGADLSFTAPLPPDF 314 Query: 228 MQALSQFGWRGLLPENERVEFSAPSG 253 L + + + E S PSG Sbjct: 315 AGLLERIR---ISLQKEGAGRSDPSG 337 >UniRef50_A3HSB5 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HSB5_9SPHI Length = 237 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 105/244 (43%), Positives = 144/244 (59%), Gaps = 12/244 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L IL++D+ ++A+NKP+G LVHR+ + E V +Q +RDQIG HV HRLDRPTSG+L Sbjct: 3 LPILFEDDSIIAINKPAGLLVHRTSIAAQETVFALQILRDQIGMHVHPVHRLDRPTSGIL 62 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAREDK 120 L E L F + QI+K Y IVRG ++A++D+PL E Sbjct: 63 LFAKKEEILPHLKNLFSERQIKKNYLTIVRGIPEQKKALIDHPLKSERSGRL-------- 114 Query: 121 GPQPAVTHYRGLATVEMP-VATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 Q A T Y+ ++ E+P TGRYPT+RY L+ + P+TGR HQ+RRHLAH+RH IIGD Sbjct: 115 --QEAQTWYKVISETEIPFDTTGRYPTSRYSLLSVNPETGRTHQIRRHLAHIRHYIIGDK 172 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGL 239 KHGD +QN FGL+ L+LHA +LS HP T E + I + + + L + Sbjct: 173 KHGDNKQNIFFQNQFGLENLLLHAIRLSFNHPITEETIEISCPVPEHFQSILKSLNLQEP 232 Query: 240 LPEN 243 L + Sbjct: 233 LISS 236 >UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBH1_9FIRM Length = 299 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 23/233 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV--MQTVRDQIGQHVF-TAHRLDRPTS 58 L I+Y+DE ++ +NKP+ VH S + + + ++ V+ +RLDR T+ Sbjct: 81 LNIIYEDEDILVINKPADMPVHPSAGNYENTLANGIAWYFAEKGEDFVYRCINRLDRDTT 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G L++ + + +L+ Q ++ QI + Y A+V G L + ++ P+ + + Sbjct: 141 GALILAKNPLSAAILSVQMKKRQILRTYLALVDGLLPDSGTINAPIARMEGSVITREVNF 200 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + A+THY LA Y L EL +TGR HQ+R H+ ++ HP+ GD Sbjct: 201 -GTGESAITHYERLA-----------AGKEYSLAELHLETGRTHQIRVHMKYIGHPLPGD 248 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + ++ + R LH+ QL THP TG+ + A L ++ A Sbjct: 249 YLY--------NPDYRRINRQPLHSYQLEFTHPTTGKVMLFTAPLPIDFISAF 293 >UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q5PAD0_ANAMM Length = 327 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 97/256 (37%), Gaps = 23/256 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L+++Y+D ++ ++K VH + R G HRLD Sbjct: 82 LKVVYEDHDVIVIDKDPYIAVHPGNGIEHHTITNALLARFGAGLQSVGSSSRPGIVHRLD 141 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIAD 113 + TSG+++ + A L+++ +K Y A+ G + V+ + Sbjct: 142 KDTSGLMVAAKTENAYYRLSEELANQGFKKEYLAVAWGIPCPKRGVIHTNI-RVKRSDIT 200 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 + G +PA T Y + L+ TGR HQ+R H++H+ H Sbjct: 201 MMEAANSGGKPAKTEYEVEQELGEV----------ASLIRCTLHTGRTHQIRVHMSHIGH 250 Query: 174 PIIGDSKHGDLRQN----RSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 I+GD K+G + + +R LHAS L HP TG+ + + D Q Sbjct: 251 SIVGDQKYGKNCKKCMRSGVPPDVKNFRRQALHASLLGFRHPSTGKYIEFTSKPADDIQQ 310 Query: 230 ALSQFGWRGLLPENER 245 +S G L R Sbjct: 311 LISALERAGNLQARNR 326 >UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N8_9BACT Length = 323 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 107/247 (43%), Gaps = 22/247 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ--------IGQHVFTAHRL 53 ILY+D+ ++ ++KP+G +VH + + VV R HRL Sbjct: 83 FPILYEDDVMLVIDKPAGVVVHPAAGNPTGTVVNALLGRYPQLAEQLACTTSRPGIVHRL 142 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIA 112 D+ TSG L + ++ A L+ F + +K Y AI RG L + Sbjct: 143 DKDTSGCLAVAKTANAQFKLSTAFAGRETRKTYLAITRGVPIRRSGELSTLIGRHPVSRQ 202 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 ++ + A+T YR TG G++ + TGR HQ+R HLA L Sbjct: 203 KMAVV-ERNGKLAITRYRV-------EYTGMLDGVEIGVLAVRILTGRTHQIRVHLASLG 254 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 P++GD+ +G R G++R +LHA +L + HP TG P+ A + + L Sbjct: 255 VPVLGDAVYGGAR-----TAVAGVERQLLHAWKLCVPHPATGTPMEFTAPPPEDIRRILE 309 Query: 233 QFGWRGL 239 + G + L Sbjct: 310 RIGVKTL 316 >UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=Q1J0S8_DEIGD Length = 341 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 108/246 (43%), Gaps = 27/246 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR----------DQIGQHVFTAH 51 L++LY+DE L+AVNKP G + H + +V R G H Sbjct: 97 LDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRLTLPEQPGAVGPDGYRPGIVH 156 Query: 52 RLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA--VLDYPLVEELD 109 RLD+ TSGV+++ + EA LA F+ K Y AI G + ++ P+ Sbjct: 157 RLDKDTSGVIVVAKTVEAHARLAAAFKDRSTHKTYLAIAAGMWKAQGPVSVNAPVGRHPT 216 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 GP+ A T + LAT LV +P TGR HQ+R HLA Sbjct: 217 ARQRMTV-GGVGPREAQTLFTPLAT------HPDGHGRTLALVRAQPHTGRTHQIRVHLA 269 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 HL PI+GD+ +G + R LHA L+L HP TGE L +HA + D ++ Sbjct: 270 HLGSPILGDAVYG--------RASAVMPRHALHAQFLTLPHPVTGETLHLHAPVPDDLLR 321 Query: 230 ALSQFG 235 A G Sbjct: 322 AWVALG 327 >UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXZ8_DESOH Length = 329 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 66/260 (25%), Positives = 102/260 (39%), Gaps = 27/260 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDR 55 L +L++D +L+ VNKP G +VH + +V HRLDR Sbjct: 82 LPLLFEDAFLLVVNKPPGLVVHPAPGHEGGTLVNRLLHHFPAIGTVGEPDRPGIVHRLDR 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG L++ ++ A + L+ F+ Q++K Y A+V G + V+ P+ + Sbjct: 142 NTSGALVVAKTAAAHQALSDMFKSRQVRKTYLALVYGQMKSTGGVVTLPIGRHSLERKKM 201 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 +PA T ++ L+ELE TGR HQ+R H L+ P Sbjct: 202 SV-SSPQARPAETRWKVRKAFV-----------DASLLELEIHTGRTHQIRVHCTALQRP 249 Query: 175 IIGDSKHGDL--------RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 ++GD + S R MLHA +L HP TG P+ A L + Sbjct: 250 VVGDPTYPCKWTRKRQHFSSRASFELLNAAGRQMLHAWRLEFDHPVTGAPMCFTAPLFED 309 Query: 227 WMQALSQFGWRGLLPENERV 246 + L +R Sbjct: 310 IKEMLHLLRAIDGTTAPKRA 329 >UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta RepID=A4RT55_OSTLU Length = 332 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 106/273 (38%), Gaps = 57/273 (20%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ---------------- 45 L+I+++DE ++ VNK +G + H S +V + + Sbjct: 70 LDIVHEDESVLVVNKAAGMVTHPSAGHESGTLVNAVLGHCDLPELVVPTGNQALSDDDED 129 Query: 46 ----------------HVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAI 89 HRLD+ TSGV+++ + A L +QF ++++Y AI Sbjct: 130 DEDAVDEDEGARDGMIRPGIVHRLDKGTSGVMVVAKDASAHNSLCEQFAARVVRRKYVAI 189 Query: 90 VRGWL-MEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTR 148 + G + ++ P+ + G + A ++Y +AT+ Sbjct: 190 LSGVPSPSKGRIEAPIGRDPRDRLRMAVT-QGGGRFAASNYEVIATL---------ANGN 239 Query: 149 YGLVELEPKTGRKHQLRRHLAHLRHPIIGDS--------------KHGDLRQNRSGAEHF 194 LVE +TGR HQ+R H H+ HPI+GD ++G + A Sbjct: 240 ASLVEWRLETGRTHQIRVHAKHIGHPILGDDTYGGGGGAAVSALSRYGVFDVKEAKALMS 299 Query: 195 GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 + R MLHA L THP +GE L + + Sbjct: 300 TIDRPMLHARTLGFTHPQSGEALDFSRDPPEDF 332 >UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QV86_BRAHW Length = 329 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 28/237 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR------DQIGQHVFTAHRLDR 55 L+ILY+D++L+ +NKP+G VH S + +V + + HRLD+ Sbjct: 109 LDILYEDKYLLVINKPAGMSVHCSPSEMSGTLVNALLYKIKDFDFVGNKERAGIIHRLDK 168 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSG++++G ++ + +QF+ I+K YHAIV G L + ++ P+ Sbjct: 169 DTSGLMIIGKNANIVSSIQEQFKNRTIKKIYHAIVVGVLKDNYIEINLPIGRHHVYRKKM 228 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 RED + A+TH + L + L+E+ KTGR HQ+R H ++ P Sbjct: 229 TVRED--GKEALTHIKVLKRF-----------NSHTLIEINLKTGRTHQIRVHSSYKGFP 275 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + GD + SG LML A ++ HP T E L D + L Sbjct: 276 VAGDKIYSKSFSKYSG--------LMLVAKKIEFMHPITKELLDFEIDYPDYFTNFL 324 >UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=C4XFS9_MYCFE Length = 315 Score = 285 bits (731), Expect = 9e-76, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 26/234 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-------HVFTAHRLD 54 L+I Y+D+ LV +NKPS +VH S ++ +V + HR+D Sbjct: 84 LDIKYEDDDLVIINKPSNLVVHPSPGHYNDTLVNGLLYHFKNNLSNENGLLRPGIVHRID 143 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIAD 113 + TSG+L++ +++ L ++H+I++ Y AIVRG + ++ P+ Sbjct: 144 KDTSGLLIIAKNNKMHNSLTDMLKRHEIERSYLAIVRGLIENPLTKINLPIARNTVDRKM 203 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K + A+T L + LV E KTGR HQ+R HL++++H Sbjct: 204 MSV--HKEGKEAITFVHLLKHFYLDKEP-------MSLVRCELKTGRTHQIRVHLSYIKH 254 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 P+ GD +G + LHA +L HP T + + ++A + + Sbjct: 255 PVYGDPTYGKSVDEFN---------QRLHAYKLKFIHPLTKKEICVYAPVPKEF 299 >UniRef50_Q30SZ1 Pseudouridine synthase n=2 Tax=Proteobacteria RepID=Q30SZ1_SULDN Length = 241 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 123/240 (51%), Positives = 167/240 (69%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILYQDE LVA+NKPSG LVHRS +DR E +QT+R+Q+G+ V+ HRLD+PTSGV Sbjct: 1 MLEILYQDEHLVAINKPSGLLVHRSPIDRHETEFAIQTLRNQLGRFVYPIHRLDKPTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 LL L E+ +++ ++F H+ +K Y A+VRG+ ++ +DY L + DKIADK + DK Sbjct: 61 LLFALDKESAKIMGEKFMAHEAKKSYIAVVRGYTLQSGEIDYALSIKFDKIADKDSSSDK 120 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQ A+THY+ LATVE+ G+Y TRY LV+L P TGRKHQLRRH+ H+ H I+GD+K Sbjct: 121 EPQEALTHYKRLATVELDFEVGKYDKTRYSLVKLNPLTGRKHQLRRHMKHISHHILGDTK 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 +G N+ + FG R++LHA L ++HP+T E L I A LD T+++ S FGW L Sbjct: 181 YGRGEHNKLIRQEFGCHRMLLHAIALEISHPYTKELLYIKAPLDVTFIEMFSFFGWDKSL 240 >UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobacterales RepID=B0K860_THEP3 Length = 285 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 27/236 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L+I Y+DE ++ VNKP+ +VH + + + V + + +RLDR TS Sbjct: 74 LDICYEDEEILIVNKPANMVVHPTKRYQSGTLANGVAWYFKEKGLKALIRPVNRLDRGTS 133 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+++ L + K Y A+V G + E +D P+ + ++ Sbjct: 134 GLVVFAKRPFMQYYLQII---KPMTKLYFAVVEGKMEGEGRIDLPISRKPQSGIERMV-- 188 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + A+T+Y+ + + R+ L++++ +TGR HQ+R HL+H+ HPI+GD Sbjct: 189 SEEGDRAITNYKVVK-----------SSKRFSLLKVKIETGRTHQIRVHLSHIGHPIVGD 237 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + +G ++R LHA +L+ HP + +++++ L L F Sbjct: 238 TLYGSSDD--------YIKRQALHAYRLTFVHPLEEKSISVYSPLPQDIQNLLKLF 285 >UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7A7_9ACTN Length = 338 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 18/253 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD--------QIGQHVFTAHRL 53 L+I Y+D++L+ ++K +G + H S D+ + Q HRL Sbjct: 86 LDIRYEDDYLLVISKQTGLVCHPSPGHVDDTLSNALVAHCGYEHLGLLQGDDRPGIVHRL 145 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIA 112 D T+G+++ + + L +RY +V+G++ +E + + Sbjct: 146 DMDTTGLMVAAKDNTTQQALQDLIRLRVFDRRYIVLVQGYVTPDEGTITTGIARSKKNRL 205 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 +D + A+T ++ L E Y L+E TGR HQ+R H+ ++ Sbjct: 206 KMCISKDPASREAITTFKTLERFE-----AGSKDDGYSLLECHLYTGRTHQIRVHMRYVG 260 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 H ++GD +G + A + GLQR LH+ ++S HP T E L L + L+ Sbjct: 261 HSVVGDPLYGR----KGDALNQGLQRQFLHSWRMSFDHPITHEHLQFCDKLPSDLSEVLA 316 Query: 233 QFGWRGLLPENER 245 + + + + Sbjct: 317 RLQPQSMGRTAQG 329 >UniRef50_Q15QZ8 Pseudouridine synthase n=5 Tax=Bacteria RepID=Q15QZ8_PSEA6 Length = 252 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 129/251 (51%), Positives = 163/251 (64%), Gaps = 2/251 (0%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L ILYQDE LVA++KP+G LVHRS +DR E MQ +RDQIGQHVF HRLDRPTSGVL Sbjct: 3 LTILYQDECLVAIHKPAGLLVHRSMIDRHETQFAMQMLRDQIGQHVFPVHRLDRPTSGVL 62 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 + LS++ RLL +QF + I K Y AIVRG + E ++DY L E+LDKIADK A++DK Sbjct: 63 VFALSADIARLLGEQFAGNTIAKTYFAIVRGHVKEAGLIDYALKEKLDKIADKRAKQDKD 122 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A T Y L E+P A RYP+ RY LV L PKTGRKHQLRRH+ H+ HPI+GD+ H Sbjct: 123 AQEAQTEYVPLQQFELPFAVSRYPSARYTLVRLHPKTGRKHQLRRHMCHINHPIVGDTTH 182 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLP 241 GD + N+ + F L L Q+ +THP + E L I D + Q+GW LP Sbjct: 183 GDGKHNKFMRDQFSFNGLALTCQQMCMTHPVSNEKLAIVNDFDQRMSTLMVQWGWE--LP 240 Query: 242 ENERVEFSAPS 252 +R++ + S Sbjct: 241 SLDRLDLLSNS 251 >UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus RepID=C6CWL6_PAESJ Length = 316 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 18/242 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ-IGQHVF--TAHRLDRPTS 58 L I+++D++L+ VNKP+G +VH + + Q G+ V HRLD TS Sbjct: 89 LSIVFEDDYLLVVNKPAGIIVHPTKGHYTNTLANGIVHHWQVRGERVRFRPVHRLDEDTS 148 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G++++ + + L++Q + I K Y A V G + + P+ + + Sbjct: 149 GLVVIAKNPYIHQQLSEQLQAGTIMKIYCAYVYGTPSPADGTVGAPIDRNPEDPHVRIVT 208 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + P+VTHY+ A + V L+ +TGR HQ+R H+ H+ P+IG Sbjct: 209 PE--GYPSVTHYKTAAVFG---------GGQASKVRLKLETGRTHQIRVHMKHIGCPLIG 257 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 D +G L+ + R LHA L LTHP T E A L +Q + R Sbjct: 258 DGMYG-LQTGKVDEWETAAGRQALHAETLGLTHPMTKEWSEWTAALPPDLVQL--ELALR 314 Query: 238 GL 239 Sbjct: 315 EC 316 >UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42CC7 Length = 322 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 25/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVM---QTVRDQIGQHVFTAHRLDRPTS 58 L+I Y+D+ L+ +NKP G S + I +RLDR TS Sbjct: 105 LDIHYEDDHLLVINKPQGMPTIPSREHPSRTLANAVMGYYESHHIPFTFHAVNRLDRDTS 164 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G+L++ A L++ ++++ Y A+ G++ E + P+ I ++ Sbjct: 165 GLLVVAKHGLAHDQLSKGQRAGKLKRYYLALAEGFVQPREGTIHAPIKRRPSSIIERMVA 224 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q A+THY+ + Y VE+ +TGR HQ+R H AHL HP++G Sbjct: 225 AD--GQEAITHYKVI-----------NDNQAYSEVEINLETGRTHQIRVHFAHLGHPLLG 271 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D +G + L R LH ++ L HPFTG+ L A L ++ + Sbjct: 272 DDLYGGSIE--------LLARQALHCQRVELIHPFTGKHLHFSAPLPKDLIEVKDKL 320 >UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytoplasma RepID=Q2NIN6_AYWBP Length = 306 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 25/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-----QHVFTAHRLDRP 56 L+I+Y+D +L +NKP+ +VH S + +V + Q HRLD+ Sbjct: 82 LDIIYEDPYLAVINKPANLVVHPSLSFQKTTLVNGLLHQFNTLSHIDTQRPGIVHRLDKN 141 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 T+G+L++ +++ L F+Q +I K Y A++ G+L ++ ++ P+ Sbjct: 142 TTGLLIVAKTNDVSDKLQIAFQQRKITKIYWALIEGFLEDKGIIKLPIGRNNHNRLKMQV 201 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 D + AVTH++ L + + L+E +TGR HQLR H + L+HPI+ Sbjct: 202 MPD--GKTAVTHFKTLQRF-----------SHFSLMECNLETGRTHQLRAHFSFLKHPIV 248 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD + LH+ L HP T + L + A L + + L F Sbjct: 249 GDLLYDSSHHITPL-------GQFLHSKILKFNHPITNQNLILEAPLPTNFEKLLKTF 299 >UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=A5IZB6_MYCAP Length = 305 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 26/234 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-------HVFTAHRLD 54 L+I Y+DE+L+ +NKPSG +VH + ++ +V + + HR+D Sbjct: 76 LDIRYEDEYLLILNKPSGLVVHPAPGHLNDTLVNALMYHFKNNLSDANGLLRLGIVHRID 135 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIAD 113 + TSG+L++ +E LA+ + HQI++ Y AI G L + ++ P+ + Sbjct: 136 KDTSGLLIIAKDNETHNELAKMLKNHQIKRTYLAICEGILPNKTTKINLPIQRDTKNRKL 195 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 +D + +VT+ L + + Y LV+ E +TGR HQ+R HLA+++H Sbjct: 196 MSIHKD--GKSSVTYVHMLKSFYI-------DNKPYSLVKCELETGRTHQIRVHLAYIKH 246 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 P+ GDS +G + LHA +LS HP + + +++ + + Sbjct: 247 PVYGDSIYGKSVDEFN---------QRLHAYKLSFMHPVINKLIEVYSDIPKEF 291 >UniRef50_C5TPY8 Pseudouridine synthase n=6 Tax=Proteobacteria RepID=C5TPY8_NEIFL Length = 264 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 161/239 (67%), Gaps = 3/239 (1%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 ML+I+++D +AVNKP+G LVHRSWLD+ E +QT+RDQIGQHV+ HRLDRPTSGV Sbjct: 27 MLDIIHRDSRTIAVNKPAGMLVHRSWLDKHETRFAVQTLRDQIGQHVYPVHRLDRPTSGV 86 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 LL L +EA RLL QQFE I+K Y AIVRG+L + ++DY L DKIA+ A+ + Sbjct: 87 LLFALDTEAARLLTQQFENKTIEKTYWAIVRGYLPSDGLIDYALKYMPDKIAE--AQTEA 144 Query: 121 GPQPAVTHYRGLATVEMPVATG-RYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 Q A T YR LA E+P + RYPT+RY EL P TGRKHQLRRH+ H+ HPI+GD+ Sbjct: 145 TLQEAQTAYRCLAQTELPFQSALRYPTSRYSWAELTPYTGRKHQLRRHMKHIFHPIVGDT 204 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 +GDLRQN + AEH G QRLMLHA LS G +T++A D+ W + +F Sbjct: 205 NYGDLRQNHAVAEHIGTQRLMLHARSLSFQSIEDGSRITVNAPTDNDWRLWMEKFKTEA 263 >UniRef50_C4KBT4 Transaldolase n=2 Tax=Proteobacteria RepID=C4KBT4_THASP Length = 648 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 124/272 (45%), Positives = 164/272 (60%), Gaps = 24/272 (8%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILY+D+WLVA++KPSG LVHRS + E+ +Q +RDQ+G+ V+ AHRLDR TSGV Sbjct: 1 MLEILYRDDWLVAIHKPSGLLVHRSPIAAHEERFAVQLLRDQLGRRVYPAHRLDRGTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAR--- 117 LL L E R LAQ+FE + KRY A+VRG E V+++ LV LD + + + Sbjct: 61 LLFALDREVARTLAQRFEAQAVDKRYLAVVRGHPPEHGVIEHALVRRLDAVEVRSGKGAG 120 Query: 118 -----------------EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR 160 + QPA T +R LATVE+P A RYP++RY LVEL P+TGR Sbjct: 121 ARDALPEDVDDSDSPEAAEPVAQPARTRFRRLATVELPHAVDRYPSSRYALVELLPETGR 180 Query: 161 KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH 220 +HQLRRHL H+ HPIIGD+ +G R NR FG RL+L ++L+L HP T PL I Sbjct: 181 RHQLRRHLKHIAHPIIGDATYGKGRHNRLFQALFGSHRLLLACTRLALAHPVTERPLEIV 240 Query: 221 AGLDDTWMQALSQFGWRGLLPENERVEFSAPS 252 A + + + L+ GW+ +R F A S Sbjct: 241 APVAEDFAAVLAALGWQTA----QRSTFEAES 268 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 282 bits (724), Expect = 6e-75, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 27/242 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDE-KVVVMQTVR-----DQIGQ-HVFTAHRLD 54 L+I+Y+D+ ++ VNKP G +VH S ++ +V D G+ HR+D Sbjct: 83 LDIVYEDDAILVVNKPKGLIVHPSPSTLNQPTLVHGLLAHTTQLSDLNGELRPGIVHRID 142 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 + T+G+L++ ++EA +L + +Q I + Y AIV + A +D P+ + Sbjct: 143 KDTTGLLVVAKTNEAHEILVEDLKQRLISREYVAIVHHQFKHQSATVDAPIGRDPKNRQR 202 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 D+ + AVTH+ + ++ + TGR HQ+R H +++H Sbjct: 203 MAVT-DQNSKQAVTHFYLAERF-----------NDFSVLRCKLDTGRTHQIRVHAQYIKH 250 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GD + S + LHA +L+LTHP + E +T A L T + + Sbjct: 251 PIVGDQTY-------SYKNTWETNGQCLHAQKLTLTHPVSKEVMTFEAELPQTMKDVIEE 303 Query: 234 FG 235 Sbjct: 304 IR 305 >UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepID=B7GLK3_ANOFW Length = 292 Score = 282 bits (724), Expect = 6e-75, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 25/234 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD---QIGQHVFTAHRLDRPTS 58 L I+Y+D++++ +NKP S + Q+ V RLDR TS Sbjct: 80 LAIVYEDDYVIVINKPPHMSTIPSREHPHGTLANALLHHYEQQQLQTTVHVVTRLDRDTS 139 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G++L+ LL++Q +Q ++++RY A+ G++++ +D P+ + D I ++ R Sbjct: 140 GLVLVAKHRHVHHLLSEQQKQGRVKRRYEAVCHGYVIQLVGTIDAPIGRKGDSIIEREVR 199 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q AVTHY L V ++ +TGR HQ+R H +H+ HP++G Sbjct: 200 LD--GQRAVTHYEVLQQ-----------KNEMTHVSIQLETGRTHQIRVHFSHIGHPLVG 246 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 D +G LR++ + R LH+ +L+ HPF + +T HA L D + L Sbjct: 247 DDLYGGLREH--------IDRQALHSCELTFFHPFFEKTMTFHAPLPDDIARLL 292 >UniRef50_C0Q9S8 TruC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9S8_DESAH Length = 260 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 113/244 (46%), Positives = 140/244 (57%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEILYQDE LVAVNKP G LVHR+ L E +Q VRDQ HVF HRLDRPT GVL Sbjct: 13 LEILYQDEDLVAVNKPPGLLVHRTALATHETRFALQMVRDQTQGHVFPVHRLDRPTQGVL 72 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L + ++ F+ +IQK Y A+VRG + E + +PL +K Sbjct: 73 LFARNRNMATRMSHLFQTGKIQKTYLAVVRGHVKERGTIVHPLKNIKHPQDNKRINHSLK 132 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 AVT Y LA+VE+P RYPTTRY LV L PKTGR+HQLRRH+ H+ HPI+GD+ + Sbjct: 133 IDDAVTDYACLASVELPFYVDRYPTTRYCLVALIPKTGRRHQLRRHMKHISHPIVGDTVY 192 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLP 241 G NR A H L+L A +L HP TG +TI A LD + + +S+F W Sbjct: 193 GKSSHNRFFATHLNCTGLLLAARELCFVHPDTGIFITITAPLDKRFQEVISKFSWDEPTK 252 Query: 242 ENER 245 E R Sbjct: 253 ELPR 256 >UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT6_THET1 Length = 313 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 27/238 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD-----QIGQHVFTAHRLDRP 56 L ++Y+D+ ++ ++KP+G +VH S D +V R Q HRLD+ Sbjct: 91 LRVVYEDDKIIVIDKPAGMVVHPSPGHYDNTLVNALIARYPDLLKQPTDRPGIVHRLDKD 150 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKF 115 TSG++++ + L Q + +I K Y + G L E ++ P+ +L Sbjct: 151 TSGLIIVARDLDTLNYLQGQMKARKIFKEYTLLCCGALDPPEGRIEAPIGRDLRDRTKMS 210 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 G + AVT Y + ++ +Y L P TGR HQ+R H A + HPI Sbjct: 211 VI--AGGKEAVTEYSTIQSL-----------GKYTLAIARPITGRTHQIRVHFAAIGHPI 257 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 GD +G+ R GL R LHAS+L + P GE H+ L + Q+L + Sbjct: 258 AGDPIYGNCRLE-------GLNRQFLHASRLGVVMP-NGEYKEWHSPLPEDLRQSLEK 307 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 282 bits (723), Expect = 8e-75, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 107/240 (44%), Gaps = 27/240 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDR 55 L ILY+D +VA++KP+G +VH +V R HRLDR Sbjct: 77 LRILYEDADVVAIDKPAGMVVHAGAGVHSGTLVNALLHRFATLSGVGGPLRPGIVHRLDR 136 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSGVLL+ + A + LA QF +I+K Y A+V G + E ++ P+ + A Sbjct: 137 FTSGVLLVAKNDAAHQKLAAQFSGREIEKVYLALVHGTVKPETGRIERPIARDPVHRARM 196 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 AR + + A + YR L + L+E+ TGR HQ+R HLA +RHP Sbjct: 197 TARLAE-GRAAWSEYRVLRRFP-----------DFTLLEVRIGTGRTHQIRVHLASIRHP 244 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD+ +G L R LHA ++ P +G + I + L L Sbjct: 245 VVGDTLYG-------APAQPLLGRYFLHAHRIRFHLP-SGREMLIESPLPPDLEAWLGTL 296 >UniRef50_A1K5H7 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A1K5H7_AZOSB Length = 260 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 117/257 (45%), Positives = 154/257 (59%), Gaps = 3/257 (1%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILYQDE LVA++KPSG LVHRS LD E+ +Q +RDQ+G+HV HRLD+ TSGV Sbjct: 1 MLEILYQDEHLVAIHKPSGLLVHRSALDAHEERFAVQLLRDQLGRHVHPVHRLDKGTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 L+ L + LA QFE ++K+Y AIVRG E +D+PL D + + Sbjct: 61 LVFALDRDTAGRLATQFETRAVRKQYVAIVRGHPAEAGTIDHPLSRRFDPVEHVAEDKVF 120 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 PQPA+T +R LAT E+P A RYPT+RY L+ LEP+TGR+HQ+RRHL H+ HPIIGDS Sbjct: 121 APQPAITRFRRLATAELPWAVDRYPTSRYALLALEPETGRRHQIRRHLKHISHPIIGDST 180 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL 240 G + NR HFG +R++L + + L HP PL +HA + GW L Sbjct: 181 FGKGKHNRMFQAHFGSERMLLACTDIELRHPQRDAPLQLHAAPAPDFRAVADALGWHDAL 240 Query: 241 PENERVEFSAPSGQDGE 257 R+ +G + Sbjct: 241 A---RLPADGDTGHNAC 254 >UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6Q2_MYCCR Length = 306 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 26/235 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD-------QIGQHVFTAHRLD 54 EI+YQD ++ +NKP +VH + D+ +V HRLD Sbjct: 82 FEIVYQDNDIIVINKPKNLVVHPGNGNWDKTLVNGLLHEFATNLSDVNGEIRPGIVHRLD 141 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIAD 113 + TSG+LL+ +++A + LA+Q E H+I+++Y AIV G + ++ P+ + Sbjct: 142 KDTSGLLLVAKNNQAHKYLAKQLENHEIERKYIAIVVGKIPHTKMRINLPIGRDNQNRTK 201 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 K + A+T+ + T Y + +V+ +TGR HQ+R HL+H+ + Sbjct: 202 K-VVSSFNSKNAITNVELINTF-------VYKNEHFSIVKCILETGRTHQIRVHLSHIGY 253 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 PI GD +G + LHA +++ H G + + D + Sbjct: 254 PIYGDPVYGKKIDDL---------GQRLHAYEITFKH-LDGRLMNFKTEMPDEFK 298 >UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia RepID=B1ZYX0_OPITP Length = 311 Score = 281 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 23/245 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG-------QHVFTAHRLD 54 L +L++D+ ++AVNK +G +VH ++ +V + HRLD Sbjct: 80 LTVLFEDKHMLAVNKAAGMVVHPGVATSEDTLVHALLAHCAGSLSGIGGVERPGIVHRLD 139 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIAD 113 + T+GV+++ + A R LA QF ++K Y A+V G +D + Sbjct: 140 KETTGVIVVAKTDAAHRALADQFATRTLKKEYVALVAGVPRLLSGSIDRAIARHPVHRHR 199 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 +G +PA T + + LV TGR HQ+R HL L H Sbjct: 200 MTV--GEGGRPARTDWELVEAFGDIG----------ALVRCRIFTGRTHQIRVHLKSLGH 247 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 PI+GD+ +G + R + R+MLHA L LTHP +G+ L + A L ++ + + Sbjct: 248 PILGDALYGWKPEPRLATQPA---RVMLHAEHLVLTHPISGKELDLRAPLPKDFVAMIKE 304 Query: 234 FGWRG 238 Sbjct: 305 LRRSA 309 >UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=A9IIW7_BORPD Length = 324 Score = 281 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 95/238 (39%), Gaps = 17/238 (7%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV---FTAHRLDRPTSGV 60 ++ + + V+KP+G + H + ++ R V HRLD+ TSG+ Sbjct: 101 VVAESPDWIVVDKPAGLVTHPGAGNWSGTLLNGLLHRYPELARVARAGIVHRLDKDTSGL 160 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK 120 +++ + A L +Q + + + Y A+ GWL +D P+ + Sbjct: 161 MVVARNELAQTHLVRQLQARSMGREYIALAHGWLPVAGKVDRPIGRDARVPVRMSVERPI 220 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 P+PA+THY L GR P V +TGR HQ+R HLA L HP++ D+ Sbjct: 221 APKPAITHYAPLRR-------GRAPDGPVTEVACRLETGRTHQIRVHLASLGHPLLADTL 273 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 +G G R MLHA L P G P A D Q W Sbjct: 274 YGGR-------LTAGATRQMLHARALHFDDPGGGGPAAFRADPPDDMRQVQEALQWSE 324 >UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQF0_FIBSS Length = 424 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 102/267 (38%), Gaps = 31/267 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ-------HVFTAHRLD 54 L I+Y+D+ +V +NKP +VH + + HRLD Sbjct: 78 LNIVYEDDDIVVINKPRNLVVHPGNGVSKGTLAAALLYHFKENLSTVNGPLRPGIVHRLD 137 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIAD 113 + T G++++ + A R LA Q E + + Y+A+V G + E +D P+ Sbjct: 138 KDTPGLMVVAKNDAAHRHLAHQLETRTLHRTYNALVWGCPRDLEGTIDAPIGRNPKNRLK 197 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 KG + + THY L+EL+ ++GR HQ+R H + H Sbjct: 198 MAVV--KGGKESRTHY-VAKQFFAI----------ATLLELQLESGRTHQIRVHSRYTGH 244 Query: 174 PIIGDSKHGDLRQN--------RSGAEHFG--LQRLMLHASQLSLTHPFTGEPLTIHAGL 223 P++GD + ++ + AE +L A ++ L HP T + LT + Sbjct: 245 PVVGDPLYDGRDESLNRVPPLMKPVAEKVLEIAPAQLLQAVKIELIHPRTNKKLTFKVPM 304 Query: 224 DDTWMQALSQFGWRGLLPENERVEFSA 250 ++ + L E Sbjct: 305 EEPFANVLKLLKKECPASAPVYDEEEG 331 >UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RLUD_BUCBP Length = 317 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 22/244 (9%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ---IGQHVFTAHRLDRPT 57 L ++Y+D+ ++ +NK ++VH + ++ RD HRLD+ T Sbjct: 84 FLNVIYEDDDILVINKQDNFVVHPGAGNTSGTLLNALLHRDSTFFNIPRAGIVHRLDKDT 143 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAR 117 +G++++ ++ + L Q + ++ + Y AIV G ++ + ++ K Sbjct: 144 TGLMVIAKNNLSYMALIDQIKCKKVIREYQAIVYGKVISGGTIVKSIIRNPIKRTTMIV- 202 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 +K + A+THYR L T + +++ +TGR HQ+R H+ ++ P++G Sbjct: 203 -NKCGKRAITHYRILKRF-----------THHTHLKIILETGRTHQIRTHMLYINFPLVG 250 Query: 178 DSKHGDLRQNRSGAEHFGL------QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 D +G+ + L R LHAS+L L HP T + ++ L + + Sbjct: 251 DKTYGNKFKFYKNISLTLLEQVKKFPRQALHASRLCLYHPVTKHLMEWNSTLPRDMLNLI 310 Query: 232 SQFG 235 + Sbjct: 311 ALLN 314 >UniRef50_Q39Z12 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=Q39Z12_GEOMG Length = 270 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 123/242 (50%), Positives = 160/242 (66%), Gaps = 1/242 (0%) Query: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLL 62 EILY+DE LVAV+KP G LVHRS +DR E +Q VRD +G+ V+ HRLD+PTSGVLL Sbjct: 2 EILYRDEHLVAVHKPLGLLVHRSPIDRHETRFALQEVRDLLGRRVYPVHRLDKPTSGVLL 61 Query: 63 MGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIAD-KFAREDKG 121 L R L F + K Y A+VRG + EE V+D+PL EE D+ + ++ Sbjct: 62 FALDPAFARGLVGAFASGSVTKTYLAVVRGTMPEEGVIDHPLAEEPDRFEQGRGNAGERA 121 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 PQ AVT YR LA VE+PVA GRYPT+RY LV L P+TGR+HQLRRHL HL HPI+GD+K+ Sbjct: 122 PQSAVTGYRRLADVELPVAVGRYPTSRYSLVSLSPRTGRRHQLRRHLKHLFHPIVGDTKY 181 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLLP 241 G+ R NR E R++LHA +L++ HP TG PLT+ A ++ + L++FGW +P Sbjct: 182 GEGRHNRFFREELLTVRMLLHAVELTVPHPATGAPLTVCAPVEGAFAALLARFGWLSAVP 241 Query: 242 EN 243 Sbjct: 242 SR 243 >UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clostridium thermocellum RepID=A3DDK9_CLOTH Length = 318 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 31/252 (12%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVM---QTVRDQIGQHVFTAHRLDRPTS 58 ++I+Y+DE+L+A+NK G +VH + + + I + + RLDR TS Sbjct: 79 IDIIYEDEFLIALNKQPGIVVHPTCSHPGGTLANAVAFHLQKKGIVKKIRPVIRLDRDTS 138 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G+++ + L +Q K Y IV L + +D P+ + I + Sbjct: 139 GIIIFAKNPYCQEFLIRQMNDKTFIKEYIGIVHKVLENDNGTIDLPIARKPGSIMLRHIS 198 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D PAVTHY L + LV+ +TGR HQ+R H + HP++G Sbjct: 199 PD--GDPAVTHYTVLERL-----------NGATLVKFRLETGRTHQIRVHCQAIGHPLLG 245 Query: 178 DSKH----------GDLRQ----NRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL 223 D+ + G+ N + R LH+ + HPFT + L I A + Sbjct: 246 DTLYPFEDTPYSLSGNNPHITQANTPSITSGIITRQALHSQRAVFLHPFTKKILEITAPI 305 Query: 224 DDTWMQALSQFG 235 + AL Sbjct: 306 PEDMKSALEILR 317 >UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermaceae RepID=C0QPR5_PERMH Length = 319 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 22/245 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR------DQIGQHVFTAHRLDR 55 ++IL++DE + V KP+G +VH S +V + HRLD+ Sbjct: 85 VDILFEDEDIAVVYKPAGMVVHPSPGHTSGTLVNALLYHFRNISEYGGKERAGIVHRLDK 144 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADK 114 T+G++++ S A + L +QF++ + KRY A+V G + + +D P+ + K Sbjct: 145 DTAGLMIIAKSEFAHKELQKQFQERTVDKRYIAVVTGIVQNDHGFIDLPIGRSIYNR-KK 203 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 E + A+T Y R +V+++ TGR HQ+R H + + HP Sbjct: 204 MGTEATNLRDALTEYWV---------KNRSEKENLTVVDIKLHTGRTHQIRVHFSAIGHP 254 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRL----MLHASQLSLTHPFTGEPLTIH-AGLDDTWMQ 229 + D +G + + + L A +++ HP TGE + I L + + Sbjct: 255 LFNDKVYGFKKSQLRSEKMRSISDQTLYHALLAYRIAFDHPRTGEKIDITLQKLPEHISK 314 Query: 230 ALSQF 234 + Sbjct: 315 VIEAI 319 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 28/255 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L I+Y+D++L+ +NKP +VH + +V T Q HRLDR Sbjct: 91 LNIIYEDDYLMLINKPYDMVVHPAGGHPSGTLVNAVTFYCQNLSQINGPLKAGIVHRLDR 150 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSGV+L+ S +A QFE+ ++K Y A+V G + + ++ P+ Sbjct: 151 DTSGVMLVIKSDAVHSHIAMQFEKRLVKKEYFAVVEGEVAFDSNEINMPIGRHRVDRQKM 210 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 R D + A + Y + Y LV++ PKTGR HQ+R H+ + HP Sbjct: 211 AVRRD-TGKNATSVYEVIERFR-----------GYTLVKIMPKTGRTHQIRVHMQAIGHP 258 Query: 175 IIGDSKHGDL---------RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDD 225 ++ D + + R+ E ++R LHA ++ HP + + + + Sbjct: 259 VVADEMYSKYNACFRSDLLGKERAPDEGSIIERQALHAHRIEFFHPILNKQMAFQVDMAE 318 Query: 226 TWMQALSQFGWRGLL 240 +S L Sbjct: 319 DISFLVSALRELRPL 333 >UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQQ9_9BACE Length = 300 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 107/234 (45%), Gaps = 24/234 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVM---QTVRDQIGQHVFTAHRLDRPTS 58 L+I+YQD+ ++ +NK G VH + + + I HRLDR TS Sbjct: 84 LDIVYQDQDVLVLNKAPGVAVHPGPGHYSDTIGNFLMDYYRKQGILADFHPVHRLDRGTS 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G+LL+ L A +L +Q ++ Y A+ G V+D P+ + + R Sbjct: 144 GLLLVALHGHAQEVLKEQLHSPSFRRVYLAVCEGAPNPPSGVIDAPIGRLEGSVLARTVR 203 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q AVTHYR L TV LV LE +TGR HQ+R H+AHL HP+ G Sbjct: 204 PD--GQRAVTHYRTLRTV-----------NDRALVRLELETGRTHQIRVHMAHLGHPLTG 250 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 D +G + + R LHA++LS THP TG+ + A L + Sbjct: 251 DFLYG-------TEDQSLIPRPALHAAELSFTHPITGKTMAFTAPLPQDMAALV 297 >UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae RepID=A8MF48_ALKOO Length = 305 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 24/234 (10%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV---MQTVRDQIGQHVFTAHRLDRPTSGVL 61 +Y+D L+ VNK G + H + D + + I V +RLD TSG+L Sbjct: 89 VYEDVDLILVNKEPGIVTHPTKSHPDWTIANGAALYLKSKGIDCKVRFVNRLDMDTSGLL 148 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDK 120 ++ ++ A +L++Q ++ +I+K+Y A V G + E E ++ P+ + D+ Sbjct: 149 IIAKNAYAHHVLSEQMQEDRIEKKYIAFVWGVIKEDEGRIEAPIYRTTMDSIKRVV--DE 206 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 Q ++T ++ L + +VE++ TGR HQ+R H+ HL HP+IGD+ Sbjct: 207 RGQESITEFKVLERYK-----------NATMVEVKLLTGRTHQIRVHMEHLGHPLIGDTL 255 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +G + + R LHA L P + + A L + + Sbjct: 256 YGK-------EDAELIDRQALHAEYLRFWQPRFKRAIEVKADLPADLLSLRDKL 302 >UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO n=53 Tax=Bacillaceae RepID=YJBO_BACSU Length = 283 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 25/235 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVM---QTVRDQIGQHVFTAHRLDRPTS 58 L+ILY+DE ++ +NK S + + V RLDR TS Sbjct: 66 LDILYEDEHVLVINKQPYVSSIPSREHPSGSIANGIIDHYQTTGVRATVHLVTRLDRDTS 125 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G++L+ A +L+ + +++RY A+V G + + E +D P+ D I ++ Sbjct: 126 GIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRHPDSIIERTVT 185 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q AVTH+ V L+ +TGR HQ+R H+++L HP+ G Sbjct: 186 PD--GQKAVTHFYV-----------TCANDDMTSVALQLETGRTHQIRVHMSYLGHPLCG 232 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 D+ +G RQ + R LH+ LS HP T E + HA L + + Sbjct: 233 DTLYGGTRQE--------IGRQALHSEHLSFIHPLTQENMRFHAPLPQDMSKLIK 279 >UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U613_HYDS0 Length = 308 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 21/242 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG------QHVFTAHRLDR 55 ++ILY+D L V KPSG H + +V + + HRLDR Sbjct: 79 IDILYEDNDLAVVVKPSGMPSHTGPGHDENTLVNALLAKFGDLSVIGGVERPGIVHRLDR 138 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 T G++++ + + + L+ F+ ++ K Y AIV G +E ++ + Sbjct: 139 YTHGLMVIAKNDVSHQKLSLMFKNKEVDKHYKAIVYGISRFKEQTIETFIRRHPTNRLKF 198 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + A+T Y + P L++++ TGR HQ+R H++++ HP Sbjct: 199 EVANE--GKLAITKY-----------SLEKPLKNASLLDIKIYTGRTHQIRVHMSYIGHP 245 Query: 175 IIGDSKHG-DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 I+GD+ +G EH +R +L A +LS HP + +P+ + D + L Sbjct: 246 IVGDTLYGYKHSYFDKTLEHMIGKRFLLVAYKLSFLHPKSQKPMEFEIDMPDYFKNVLKY 305 Query: 234 FG 235 Sbjct: 306 LE 307 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 113/254 (44%), Gaps = 29/254 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR----------DQIGQHVFTAH 51 L+++Y+D++L+AVNKP G + H + +V R + G H Sbjct: 77 LDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALLGRMPLPEQPDYDSEAGYRPGIVH 136 Query: 52 RLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA--VLDYPLVEELD 109 RLD+ TSGV+++ + A LA F+ + +K Y AI G + ++ P+ Sbjct: 137 RLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYLAIAAGQWRADGPARVEAPIGRHPV 196 Query: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 + P+ A T + LA A LV +P+TGR HQ+R HLA Sbjct: 197 QRQRMTV-GGANPREAQTLFTPLA------AHPDGHGRTLALVRAQPRTGRTHQIRVHLA 249 Query: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQ 229 HL PI+GD+ +G + R LHA LS+ HP TG L +HA D + Sbjct: 250 HLGSPILGDAVYGRSSETML--------RHALHAHFLSVPHPGTGRLLHLHAPAPDDMLN 301 Query: 230 ALSQFGWRGLLPEN 243 A G G +P + Sbjct: 302 AWIALG--GAMPSD 313 >UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWB7_HALOH Length = 310 Score = 279 bits (715), Expect = 7e-74, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 119/237 (50%), Gaps = 24/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV--MQTVRDQIGQH-VFTAHRLDRPTS 58 L+I+Y+D L+ +NKP+ LVH + +++ +V + +R+Q + V HRLDR T+ Sbjct: 93 LDIIYEDRHLLVINKPANMLVHPTPVEKSNTIVNGVLYHMRNQGNYNLVRPIHRLDRNTT 152 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAR 117 G+LL+ + A + QF+ + I + Y A V G + ++ ++ P+ + D + + Sbjct: 153 GLLLIAKNQYAHNYITHQFQNNNIHREYLAFVHGNVEFKKESINAPIGKTRDSLIKRKVD 212 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + AVTH + + P L+ ++ +TGR HQ+R HL+HL HP++G Sbjct: 213 HTL-GKRAVTHIKVVK-----------PGGLISLIRVKLETGRTHQIRVHLSHLGHPLLG 260 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D+ +G E ++R LH+ +++ PF + +T A L + Q Sbjct: 261 DTLYGG--------EDILIKRPALHSYKVTCCLPFKHKEVTFKAPLPVDMEKLKKQL 309 >UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGX8_BDEBA Length = 319 Score = 279 bits (715), Expect = 7e-74, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 109/261 (41%), Gaps = 37/261 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR------DQIGQHVFTAHRLDR 55 L++L++DE L+ +NKP+G +VH + + +V + HRLD+ Sbjct: 69 LDVLFEDEDLIVINKPAGLVVHPAAGHAHDTLVNALIHHTDDLSMKFGEERPGIVHRLDK 128 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADK 114 TSG++++ + +A L QF++ + Y+A+ G + L Sbjct: 129 ETSGIIVIAKNDKAHESLTSQFKERSTHRIYYAVCLGTARTLSGSVRSFLARHPVDRKRY 188 Query: 115 FAREDKGPQP-------------AVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRK 161 + +P AVTH+ L + ++L+ +TGR Sbjct: 189 ASVLGDDRKPLTDPNDDPGLGKWAVTHFEVLQR-----------KSGMSYLKLKLETGRT 237 Query: 162 HQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEH------FGLQRLMLHASQLSLTHPFTGE 215 HQ+R H++ PI GD+ +G R+ +S L R +LHA++L THP T E Sbjct: 238 HQIRVHMSESGLPIAGDTLYGADRKIKSIEARATQEDLRTLPRFLLHAAELGFTHPRTKE 297 Query: 216 PLTIHAGLDDTWMQALSQFGW 236 + + + + ++G Sbjct: 298 RMFFTKDWPEDVLVLIKKWGL 318 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 279 bits (714), Expect = 8e-74, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 29/240 (12%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDRPTS 58 +Y+D++L +NK +G +VH S ++ +V + + HRLD+ TS Sbjct: 78 VYEDKYLAIINKYAGMVVHPSKGHEEDTLVNAIMYKIKDLSGINGDLRPGIVHRLDKNTS 137 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G++++ + L++ F+ +I+K Y+AIV+G + + ++ + + Sbjct: 138 GLIIIAKDDKTHFKLSEMFKNKEIKKIYYAIVKGKVNKKSGRIETMIGRNPNDRKKMAVV 197 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + + A+T++ + + E ++ L++++ +TGR HQ+R HL+H PI+G Sbjct: 198 D--NGKLAITNFEVIDSNE-----------KFSLLKVDLETGRTHQIRVHLSHFFFPILG 244 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 DS +G + R MLHA L+ HP T E + + +++ALS R Sbjct: 245 DSVYGRKDEY---------DRQMLHAYMLNFIHPITLEKIDVIGNFHSDFLRALSNTKLR 295 >UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C6LL16_9FIRM Length = 313 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 25/234 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT---AHRLDRPTS 58 L+I+Y+DE L+ ++KP+ VH S + D + + F RLDR T+ Sbjct: 85 LDIVYEDEDLLVIDKPADMPVHPSIHNFDNTLANGLAYYYESRGEAFVYRCITRLDRDTT 144 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+LL+ + +G LA+ ++ +I + Y AIV G E +D P+ + ++ Sbjct: 145 GLLLVAKNMLSGAFLAEMGKRREIHREYLAIVTGKTEAEGTVDAPIARVEGSVLERCVDF 204 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + + AVTHYR L Y LV L+ +TGR HQ+R H+ ++ HP+ GD Sbjct: 205 QR-GERAVTHYRTLEY-----------RDGYSLVRLKLETGRTHQIRVHMKYIGHPLTGD 252 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 + ++ + LH+ L+ HP TGE + + W Sbjct: 253 FLY--------NPDYRLMDHQALHSHYLAFRHPITGERMEFTSQPP--WQGLWE 296 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 25/237 (10%) Query: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTSG 59 EILY+D+ L+ VNKP G L+H + + V R + V HRLD+ TSG Sbjct: 87 EILYEDDHLLIVNKPVGLLLHPTERYHHVTLDHLVSGHFFRTGLEAKVRHVHRLDQDTSG 146 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFARE 118 V+L A LL + + I++ Y A V G + +E ++ P+ ++ + + Sbjct: 147 VVLYAKHPWASALLDEMLRERTIKRTYVAYVSGQMPKERGKINEPIGKDRNHGTRRRVT- 205 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 PA+THY+ VE + +TGR HQ+R H +H+ HP++GD Sbjct: 206 -PNGDPAITHYQVKERF-----------QTATKVECQLETGRTHQIRVHFSHIGHPLLGD 253 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +G R+ ++R LHA+ L HPF GE + + A L + Sbjct: 254 ELYGGKRE--------LIKRQALHAAVLKFEHPFGGEVIEVTAPLPLDLFHLEKKLR 302 >UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV48_METI4 Length = 325 Score = 277 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 102/245 (41%), Gaps = 26/245 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 LEILY+DE ++ VNK G +VH S +V HRLD+ Sbjct: 91 LEILYEDEEILIVNKQRGMVVHPSCGHWSGTLVNSLLFHYGESLPGSSLLRPGIVHRLDK 150 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIADK 114 TSGV+++ + + + L QF Q +QK Y + + + + Sbjct: 151 DTSGVMVIAKTERSLKSLLLQFSQRTVQKVYLCLCKNRFPYLRYSFEANIHRHASDRKKM 210 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 K + A T + L + +++ ++ EP +GR HQ+R HL+HL P Sbjct: 211 AVHRLK-GKTAETRFTLL-----------FASSQASFLKCEPVSGRTHQIRVHLSHLGFP 258 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 IIGD +G + L+LHA L + HP +G+ + A L + +AL F Sbjct: 259 IIGDPLYGKGVRKYPFP-------LLLHAYALKIEHPRSGKKIEFMAPLPQDFKEALDFF 311 Query: 235 GWRGL 239 R Sbjct: 312 YGRNF 316 >UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID=B7HGW1_BACC4 Length = 297 Score = 277 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 25/236 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD---QIGQHVFTAHRLDRPTS 58 L I+Y+D+ ++ +NK + S V + V RLDR TS Sbjct: 82 LCIIYEDDAVLIINKEANMSTIPSREHPAGSVANALLSHYDKQHLASTVHIVTRLDRDTS 141 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELDKIADKFAR 117 G++L+ + LL++Q +Q +++ Y AIV G + E ++D P+ + D I ++ Sbjct: 142 GLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHGKIVEREGMIDAPIGRKSDSIIERTVC 201 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 ED Q AVTH++ + + V LE +TGR HQ+R H+AH+ HP++G Sbjct: 202 ED--GQRAVTHFKVIDSTYHK-----------THVALELETGRTHQIRVHMAHVGHPLLG 248 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 DS +G R ++R LH+ L+ HP + ++ L + L Sbjct: 249 DSLYGGRRDE--------MKRQALHSKSLTFYHPILEKEMSFTIKLPSDMQEVLRH 296 >UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C n=110 Tax=Gammaproteobacteria RepID=RLUC_SALTY Length = 319 Score = 277 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 14/234 (5%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D+ ++ +NKPSG VH + ++ +R + + HRLDR TSGVLL+ Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR-PEARFLELVHRLDRDTSGVLLV 153 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAREDKGP 122 A R L +Q + +QK Y A+VRG + PL++ + + ++ R + Sbjct: 154 AKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRVSQEG 213 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 +P+ T ++ LV P TGR HQ+R H + HPI D ++G Sbjct: 214 KPSETRFKVEERYAF-----------ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG 262 Query: 183 DLRQNRSGAEH-FGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 D ++ E GL+RL LHA+ L THP TGE + I A +D+ + L Sbjct: 263 DREFDQQLTEAGTGLKRLFLHAAALKFTHPGTGEVMRIEAPMDNALKRCLQVLR 316 >UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR26_9FIRM Length = 301 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 26/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV---VMQTVRDQIGQHVFTAHRLDRPTS 58 L I+Y+D++L+ VNKP+G LVH + + + + HRLDR TS Sbjct: 75 LHIVYEDDFLLIVNKPAGLLVHPTSDPTEPTLAHGILYYLHSKGALGAFHPIHRLDRNTS 134 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G++ + L+ + +++ Y A+V G +D P+ + I + R Sbjct: 135 GLVAIAKHPHIQHALSGGGAKG-LKRLYLAVVTGIPSSLMGRIDAPIGRHPNSIIKRVVR 193 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D QPA+T YR L+T M LVELE TGR HQ+R HL+H+ HP++G Sbjct: 194 SD--GQPAITLYRVLSTFSM-----------ASLVELELLTGRTHQIRVHLSHIGHPLLG 240 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 D +G ++R LHA+ LS HP T + LT+ + L + + Sbjct: 241 DDLYGG--------ATDLIRRQALHAASLSFRHPATDKVLTLTSPLPPDLADLIQLLRQK 292 >UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8FTI5_DESHD Length = 302 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 25/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 LEILY+D++ +A+NKP+G +VH + + VV + + HR+DR TS Sbjct: 83 LEILYEDDYFIAINKPAGQVVHPTPRYPRGTIGNAVVGYWLAKGEARPFRPIHRIDRNTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAR 117 GV+++G + A + +A Q +I K Y IV G + ++ + P+ D + Sbjct: 143 GVVVIGKNQFAHQQMAWQHAHGRIHKCYRGIVEGQVMEDQGTIKAPIALAPDSFIQRQI- 201 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 PAVT Y+ L L+E +TGR HQ+R H HL HP++G Sbjct: 202 -SPEGSPAVTLYKVLERY-----------QDASLLEFILETGRTHQIRVHCQHLGHPLLG 249 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D +G + R LH+S HP TGE TI A L + + L + Sbjct: 250 DDLYGGN--------LARINRQALHSSIYEFNHPLTGELTTIQAPLPEDLQRLLREL 298 >UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae RepID=C7MN62_CRYCD Length = 347 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 18/247 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTV--------RDQIGQHVFTAHRL 53 L++ ++D W++A++K +G VH + +V Q HRL Sbjct: 82 LDVRFEDRWMMAISKQAGLCVHPAPGHEGGTLVNALIYAYGRDSLAHVQGDDRPGIVHRL 141 Query: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIA 112 D TSG+++ G L H++ +RY +V G + + +D P+ D Sbjct: 142 DMDTSGLMMCAKDDTCGMALQDLVRDHKVDRRYLTLVHGNIAFDTGQIDEPIGRVGDDRL 201 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + A+T + L E Y L+E TGR HQ+R H+ + Sbjct: 202 RMKISYRPTARNALTTFTVLERFE-----AGRADNGYTLLECRLYTGRTHQIRVHMEFIG 256 Query: 173 HPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 H +GD + + + + L R LH+ LS HP TG+ + + GL AL Sbjct: 257 HCCVGDPLY----RWGNEQVNLELSRQFLHSYSLSFNHPMTGDDIALVDGLPPDLFGALR 312 Query: 233 QFGWRGL 239 R + Sbjct: 313 SLEDRSM 319 >UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G2_9PROT Length = 325 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 100/246 (40%), Gaps = 26/246 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ------HVFTAHRLDR 55 L+IL++DE L+ +NKP+G +VH S +V + HRLD+ Sbjct: 88 LDILFEDEHLIVLNKPAGIVVHPSHGHDHGTLVHALLHHCKTLPGINGVERPGIVHRLDK 147 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADK 114 TSG L++ S + L++ F +H + ++Y A RG ++ P+ + Sbjct: 148 DTSGSLVIAKSEVVHQRLSEMFAEHNLNRQYIAWCRGVPSWRVKCIELPIGRHPHQRQKM 207 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + ++T A + + + L TGR HQ+R H+AH P Sbjct: 208 AVTDS--GRESITD-----------AAVEHIFGPFSQMRLTLHTGRTHQIRVHMAHENLP 254 Query: 175 IIGDSKH------GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 ++GD + G + L R LHA L HP +GEP++ A L + Sbjct: 255 VLGDPVYARSYHPGREIPEPARHAIATLSRQALHAELLEFDHPISGEPMSFRAPLPEDLT 314 Query: 229 QALSQF 234 Sbjct: 315 ILHDAL 320 >UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZUU7_9FIRM Length = 293 Score = 276 bits (708), Expect = 4e-73, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 23/233 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 + +LY+DE ++ VNKP+ VH S + + V +RLDR TS Sbjct: 81 IPVLYEDEDILVVNKPADMPVHPSLGNYTNTLANGVAAYLETKGESCPFRCINRLDRDTS 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G L++ ++ + +L+ Q QI + Y A+V G + + P+ D + ++ Sbjct: 141 GALILAKNALSAAILSVQMRNRQISRTYLAVVEGIPRQSGTISAPISRAADSVIERRIDF 200 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + + A+THY+ L + L+E+ +TGR HQ+R H+ ++ HP+ D Sbjct: 201 E-NGESAITHYQLLE-----------VKNNHSLLEIHLETGRTHQIRVHMGYIGHPLPAD 248 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + + +R LH+ QL HP TG P+ + A + + A Sbjct: 249 YLYNPVYDT--------FKRQPLHSLQLKFCHPITGTPMCLMAPVPEDMSNAF 293 >UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7B4_9BACT Length = 301 Score = 276 bits (706), Expect = 7e-73, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 101/238 (42%), Gaps = 22/238 (9%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTV----RDQIGQHVFTAHRLDRPTSGV 60 +Y D+WL V K +G VH +D +V G HRLD TSG+ Sbjct: 81 VYADDWLAVVEKLAGIAVHPGAGRKDGTLVNGLVKTFGPLPGAGLRPGIVHRLDIGTSGL 140 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELDKIADKFARED 119 +++ + +A L ++F Q +++K Y A+V GW + LD P+ R D Sbjct: 141 MVVARTPQAYLFLQREFSQRRVEKTYLALVHGWIPASQGTLDGPIGRSRYDRLKMAVRAD 200 Query: 120 KGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDS 179 + AVT YR L T L +TGR HQ+R H+A + + GD Sbjct: 201 --GRRAVTRYRTLWT-----------RGSLSLTACRIETGRTHQIRVHMASIGCYLDGDR 247 Query: 180 KHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 +G +R HF R+ LHA +LS HP G + + L D + L + Sbjct: 248 LYGPKDVSR----HFLEGRVFLHAWRLSFHHPSDGRTMNFRSPLPDELIGVLKKIRSE 301 >UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus RepID=C0MA80_STRE4 Length = 300 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 103/242 (42%), Gaps = 26/242 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV----MQTVRDQIGQHVFTAHRLDRPT 57 L+I+Y+DE + +NKP+G+ S + + +D + V RLDR T Sbjct: 76 LDIVYEDEHFLILNKPAGYASIPSAIH-SNTIANFIKAYYIKQDYPNKQVHIVTRLDRDT 134 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG--WLMEEAVLDYPLVEELDKIADKF 115 SG++L A L +Q +Q I KRY+A+V G L ++ + P+ D I + Sbjct: 135 SGLMLFAKHGYAHARLDKQLQQRAINKRYYALVCGQERLPDQGEIIAPIGRTDDSIITRT 194 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 + A T Y+ +A LV++ TGR HQ+R H AHL P+ Sbjct: 195 VT--PKGKYAKTSYKVIARYPE----------NVSLVDITLHTGRTHQIRVHFAHLGFPL 242 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD +G G+ R LH LS THPFT L D + + Sbjct: 243 LGDDLYGGR-------LDLGMTRQALHCHHLSFTHPFTESRSDHTICLTDDFESVIIDLQ 295 Query: 236 WR 237 + Sbjct: 296 KK 297 >UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Tax=Spiroplasma citri RepID=Q14NK8_SPICI Length = 306 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 25/244 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR------DQIGQHVFTAHRLDR 55 L ILY+D +L+ ++KP+ +VH + +++ +V R Q HR+DR Sbjct: 81 LTILYEDSYLMVIDKPNNLVVHPAPGHQNDTLVNALLARGVQWSTASGEQRPGIVHRIDR 140 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADK 114 T+G L++ + L QQ + Q+Q+RY A+V G + A +D P+ + + K Sbjct: 141 QTTGTLIIAKNDVVHHQLQQQIQTKQLQRRYLALVHGQIIENRAKIDAPIGRDPNNR-KK 199 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 K + A+T+ + Y +E E ++GR HQ+R HL ++ HP Sbjct: 200 MVVTAKNSKKALTNIVVIERF-----------NDYTYIECELESGRTHQIRAHLKYINHP 248 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 I+GD +G + + LHA QL HP T E LTI A L + Q L+ Sbjct: 249 IVGDPLYGTVADKKESF------GQYLHAYQLRFIHPVTKESLTITAALPQEFEQRLAIL 302 Query: 235 GWRG 238 +G Sbjct: 303 RAKG 306 >UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID=A8RHQ2_9CLOT Length = 287 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 21/233 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV---FTAHRLDRPTS 58 L I+Y+DE ++ +NK +G +H S D + + +RLDR T+ Sbjct: 69 LSIVYEDEDILVINKDAGVPIHPSQGHYDNTLANAVSWYFHEKGEAFTYRVINRLDRDTT 128 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+L++ + +L++Q +I++ Y AIV G EE +D P+ ++ Sbjct: 129 GLLVLARHMLSACILSEQMTGRRIRREYRAIVLGHTPEEGTVDSPIARAEGSTIERRVDH 188 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 + + AVTH+R L E LV L +TGR HQ+R H+ + HP+ GD Sbjct: 189 E-TGERAVTHFRTLLYNEEK---------DLSLVSLSLETGRTHQIRVHMRSIGHPLPGD 238 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + ++ + R LH+ L HP TG+ + AGL + Q L Sbjct: 239 FLY--------CPDYRYIDRQPLHSYLLRFEHPITGKEMEFTAGLPEDMKQLL 283 >UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q5QZ45_IDILO Length = 315 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 114/232 (49%), Gaps = 14/232 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D+ L+ +NKPSG VH + + ++ +R + + HR+DR TSG+LL+ Sbjct: 94 ILYEDDALMLINKPSGVAVHGGSGLQFGLIEGLRALRPKEKS-LELVHRIDRDTSGLLLV 152 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIADKFAREDKGP 122 R L +Q ++ K+Y A+VRG + ++ PL + K ++ R D Sbjct: 153 AKKRSVLRSLHEQLRNKEMNKQYLALVRGQWQKRVRSVEAPLKKNTLKSGERIVRVDAEG 212 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + ++T +R + LVE P TGR HQ+R H H HPI D K+G Sbjct: 213 KASLTRFRIQQRYKEG-----------TLVEASPVTGRTHQIRVHALHAGHPIAKDPKYG 261 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D + + + GL RL LHA QL HP TG+ + A LDD Q L Q Sbjct: 262 DTDFDNTMS-RLGLNRLFLHAWQLRFLHPVTGKEVAFEAPLDDNLQQTLKQL 312 >UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Gammaproteobacteria RepID=RLUD_BLOFL Length = 321 Score = 273 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 26/246 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ----IGQHVFTAHRLDRPT 57 L I+Y+D ++ +NK S +VH V+ R I + RLD+ T Sbjct: 86 LNIIYEDNDILVINKASNMVVHPGIGHYQGTVLNALLYRYPSILKISKQAGIVQRLDKDT 145 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFA 116 +G++++ + A L + F+ ++ K Y AIV G V++ P+ K Sbjct: 146 TGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYGKFTSNAGVVNQPMRRHFAKRTFMSV 205 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 + AVT+Y + + + V + KTGR HQ+R H+A++ HP++ Sbjct: 206 HY--TGKSAVTYYSVVEEFKA-----------HSRVRINLKTGRTHQIRVHMAYINHPLV 252 Query: 177 GDSKH-GDLRQNRSGAEH-------FGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 GD K+ G+ R LHA L L HP T + +A L + Sbjct: 253 GDQKYKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLHPITQVQMKWNAPLPQDIL 312 Query: 229 QALSQF 234 Q ++ Sbjct: 313 QLIAIL 318 >UniRef50_Q31IZ8 Pseudouridine synthase n=2 Tax=Proteobacteria RepID=Q31IZ8_THICR Length = 252 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 114/237 (48%), Positives = 153/237 (64%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +ILYQD+ LVAV+KP+G LVHRS +DR E +Q RDQI Q V+ HRLD+ TSG+L Sbjct: 10 FKILYQDDSLVAVHKPAGLLVHRSPIDRHETQFAVQMTRDQINQKVYPLHRLDKATSGLL 69 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L L S RL+ QQFE+H IQK Y AI RGW E +D+ L +LDK+ D+ A+ +K Sbjct: 70 LFALDSNTARLMGQQFEEHTIQKHYLAICRGWTAEHGEIDHALKHKLDKLGDRHAQTNKP 129 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 PQ A+T++ LAT ++ G++ + RY LV+L PKTGRKHQLRRHL H+ HPIIGD K+ Sbjct: 130 PQEALTNFERLATTDVMHKIGKFDSQRYSLVKLMPKTGRKHQLRRHLNHISHPIIGDVKY 189 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 GD N G RL L A+ L+ HP T +T++A L+ ++ +A W+ Sbjct: 190 GDRHHNHFFNTWLGQHRLYLAATSLTFNHPQTNARMTLNAPLELSYQKATQHLNWQE 246 >UniRef50_Q5Z8P2 RNA pseudourine synthase 2, chloroplastic n=6 Tax=Magnoliophyta RepID=PUS2_ORYSJ Length = 445 Score = 272 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 60/295 (20%), Positives = 106/295 (35%), Gaps = 71/295 (24%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ---------------- 45 L+I+Y+D+ L+ VNKP+ +VH + + + +V +I Sbjct: 140 LDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNSIDDECPDS 199 Query: 46 ---------------------------HVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFE 78 HRLD+ TSG+L++ + LA+QF+ Sbjct: 200 SDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 259 Query: 79 QHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAREDKG---PQPAVTHYRGLAT 134 H I++ Y ++ G ++ P+ + + A G + A + Y+ Sbjct: 260 LHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGSGHRYARHAASRYKVREV 319 Query: 135 VEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHF 194 LVE +TGR HQ+R H +L P++GD +G + Sbjct: 320 F---------AGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRP 370 Query: 195 G---------------LQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + R LHA+ L HP +G+ L D + + L++ Sbjct: 371 RTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNEL 425 >UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C n=59 Tax=Proteobacteria RepID=RLUC_VIBCH Length = 315 Score = 272 bits (696), Expect = 9e-72, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 119/234 (50%), Gaps = 17/234 (7%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+Y+D+ L+ +NKPSG VH + ++ +R Q + + HR+DR TSG+LL+ Sbjct: 97 IVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQ-ARFLELVHRIDRDTSGILLV 155 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAREDKGP 122 A R L QF + +QK Y+A+V G E V++ PL++ R + Sbjct: 156 AKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNS---IVRVNPNG 212 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 +P+ T +R L LV+ P TGR HQ+R H ++ HPI D ++G Sbjct: 213 KPSETRFRILEKF-----------AEATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYG 261 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 D R + + FG++RL LHA+ + HP + + L IHA L+ QAL++ Sbjct: 262 DRRFD-AYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLEAHLEQALTKMRQ 314 >UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Tax=Magnoliophyta RepID=PUS2_ARATH Length = 430 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 59/292 (20%), Positives = 104/292 (35%), Gaps = 63/292 (21%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ---------------- 45 L+I+Y+D+ ++ VNKP+ +VH + + +V + Sbjct: 148 LDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDDDSDEET 207 Query: 46 ------------------HVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYH 87 HRLD+ T+G+L++ + LA+QF+ H I++ Y Sbjct: 208 FSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYV 267 Query: 88 AIVRGWL-MEEAVLDYPLVEELDKIADKFA----REDKGPQPAVTHYRGLATVEMPVATG 142 ++ G + ++ P+ + A + A + Y+ + T Sbjct: 268 SLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETF------- 320 Query: 143 RYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLR---------------QN 187 LVE +TGR HQ+R H ++ P++GD +G + Q Sbjct: 321 --AGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQE 378 Query: 188 RSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGL 239 + R LHA L THP TGE + + + GL Sbjct: 379 EIIELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIVGLLRRSGL 430 >UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBY1_GARVA Length = 321 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 24/243 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV------VVMQTVRDQIGQ-HVFTAHRLD 54 + I+Y D+ +V ++KP G H + V V + + RLD Sbjct: 92 IPIIYNDDDVVVIDKPVGVASHAAKGWSGPTVPECLEAVGIDIKTTLCDESRKGIVSRLD 151 Query: 55 RPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIAD 113 TSG++L+ + A ++ QF +H ++K YHA+V+G L ++ +D P+ Sbjct: 152 VGTSGLMLVCKTDFAYEVMKNQFAKHIVKKTYHALVQGDLAQDKATIDAPIGRAKVSDFR 211 Query: 114 KFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 D +PAVTH+ L ++ LV + +TGR HQ+R H + + H Sbjct: 212 FTITSD--GKPAVTHWDVLERF-----------SQATLVSVNLETGRTHQIRVHFSSIGH 258 Query: 174 PIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 P++GDS +G N A+ GLQR LH+ +L+ THP TG+ +T+ + AL Sbjct: 259 PLVGDSMYG---ANPVLAQKLGLQRQWLHSMELTFTHPRTGKSVTVKSHYPLDLQHALEA 315 Query: 234 FGW 236 Sbjct: 316 MRA 318 >UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GP31_9BURK Length = 335 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 113/236 (47%), Gaps = 9/236 (3%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L IL++DE L+ VNKPSG VH + ++ +R + Q + HR+DR TSG+L Sbjct: 104 LPILFEDEHLLVVNKPSGMAVHGGSGSSFGLIECIRALRAETHQDLELVHRIDRETSGIL 163 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAREDK 120 ++ A R L +Q +K Y +V G E +D PL++ + D+ Sbjct: 164 IISKKRSALRKLQEQLRARSWKKYYKTLVLGHWPEALRQVDLPLLKTQSSEKEARVFVDE 223 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 A T ++ + + ++ + L++ + TGR HQ+R H + + PI GD + Sbjct: 224 SGDKACTKFKVIQCYKSSYSS-------FTLIQAQILTGRTHQIRVHTSANKFPIAGDDR 276 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 +G+ N+ A GL+R+ LHA++L L HP T E + + A L L Sbjct: 277 YGNFEMNKQLARQ-GLKRMFLHAARLQLVHPATNETIVLEAPLAPELDGFLKSLQA 331 >UniRef50_B6TXP4 RNA binding protein n=3 Tax=Poaceae RepID=B6TXP4_MAIZE Length = 439 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 57/296 (19%), Positives = 104/296 (35%), Gaps = 71/296 (23%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ---------------- 45 L+I+Y+D+ ++ VNKP+ +VH + + +V +I Sbjct: 138 LDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTFTCLARSSAGDECPDS 197 Query: 46 ---------------------------HVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFE 78 HRLD+ TSG+L++ + LA+QF+ Sbjct: 198 SDEDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAKDEHSHARLAEQFK 257 Query: 79 QHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAREDKG---PQPAVTHYRGLAT 134 H I++ Y ++ G ++ + + + A G + A + Y+ Sbjct: 258 LHTIRRVYISLTCGAPNPNSGRIEASIARDPNNRIRMTAIAGSGHRYARNAASRYKVREV 317 Query: 135 VEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHF 194 LVE +TGR HQ+R H ++ P++GD +G + Sbjct: 318 F---------AGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSMALSLLRP 368 Query: 195 G---------------LQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 + R LHA+ L HP +G+ L D +++ L + Sbjct: 369 RSPSKYHSGLSNLLSKVDRPCLHAASLGFKHPRSGKVLEFSCPPPDDFLEVLGELR 424 >UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID=B7GEZ0_ANOFW Length = 315 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 25/229 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPTS 58 L I+++D+ ++ VNK + VH + + + Q V HRLDR TS Sbjct: 96 LHIVFEDDHVLVVNKRAHMDVHPTQPGQTNTLANAVAFHFQCEGIYSKVRHIHRLDRDTS 155 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAR 117 GV+L + AG +L Q + I++ Y A+V G++ ++ ++ P+ + + Sbjct: 156 GVILFAKHALAGAILDQYLAKRTIRRTYIALVHGYVKQKKGTIEAPIGRDRHHPTRRRV- 214 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 K A+THY L + LV L TGR HQ+R H++++ HP++G Sbjct: 215 -SKTGDTAITHYERLQYDKQK---------HVSLVRLTLDTGRTHQIRVHMSYIGHPLVG 264 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDT 226 D+ +G + R LHA LS HPFT E +T A L D Sbjct: 265 DTLYGGKPW---------IDRQALHAFSLSFLHPFTEELITCSA-LPDE 303 >UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. JS666 RepID=Q126H9_POLSJ Length = 378 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 78/256 (30%), Positives = 120/256 (46%), Gaps = 17/256 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 +L++D++L+A++KP+G VH + ++ R Q + HRLDR TSG+L Sbjct: 126 FPVLFEDDFLLAIDKPAGVAVHGGSGVSFGVIEQLRMARPQ-ADFLELVHRLDRETSGIL 184 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVE--------ELDKIA 112 L+ A +LL +QF + + K Y A+V G W V+D L + E ++ Sbjct: 185 LIAKRRMALKLLQEQFRERETDKVYLALVSGNWPANHRVIDKALHKYLLPGGAGEGERRV 244 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 + +VT + + A P T + L+E+ KTGR HQ+R HLA+ Sbjct: 245 KVVPNDHPDGMRSVTLVKVKSAF---AALPAAPGTPFTLLEVTIKTGRTHQIRVHLANEG 301 Query: 173 HPIIGDSKHGDLRQNRSGAEHF----GLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWM 228 HPI GD K+GD N+S + L+R+ LHA L HP T + + + L D Sbjct: 302 HPIAGDDKYGDFELNKSLQKSVAGGAPLKRMFLHAWSLKFNHPKTRKTIHLETPLPDELQ 361 Query: 229 QALSQFGWRGLLPENE 244 Q LS P + Sbjct: 362 QFLSVRPQGSAGPAAQ 377 >UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSZ4_ALKMQ Length = 308 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 103/240 (42%), Gaps = 24/240 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVM---QTVRDQIGQHVFTAHRLDRPTS 58 ++Y+D ++ +NK G + H + + + + + + +RLD TS Sbjct: 86 FNVVYEDIDVIVINKEPGIVSHPTKSHPKDTIANAAQNYLEKKGVACRIRFVNRLDMDTS 145 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKFAR 117 G+L++ + +++QQ + ++I K+Y A V+G + E +D + D+ + Sbjct: 146 GLLVIAKNPYTHHIMSQQMKANEITKKYVAFVKGVVVANEGEIDGAIYRSSDETIKRVV- 204 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D Q ++T + L ++E+ TGR HQ+R H+ + HP++G Sbjct: 205 -DDRGQQSLTKFTVLERY-----------ADATMLEVSLLTGRTHQIRVHMESIGHPMLG 252 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 D +G + ++R LHAS LS P E + + A L + ++ Sbjct: 253 DHLYG-------YVDTELIRRQALHASYLSFLQPRYKEKIEVRASLPKDLNELRNKLKDE 305 >UniRef50_A6VXE8 Pseudouridine synthase n=2 Tax=Marinomonas RepID=A6VXE8_MARMS Length = 242 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 102/236 (43%), Positives = 145/236 (61%), Gaps = 1/236 (0%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L+IL+QDE LVAVNKP+G LVHR+ L +DE+ V+Q +RDQ G+ VF HRLDR TSGVL Sbjct: 3 LDILFQDEHLVAVNKPAGLLVHRTNLAKDEEDAVVQRLRDQTGKWVFPVHRLDRGTSGVL 62 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 +M S E R L+ QF + + QK YH +VRG+ E V++YPL + ++ + + Sbjct: 63 VMAFSPEVARRLSTQFAESKTQKTYHCLVRGYCNESGVINYPLAKLNEQKGRSRFKIEGT 122 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + A T + L ++PV RY + R +E+ PK GRKHQ+RRH H +P++GDS + Sbjct: 123 EREAETGFTRLIQYQLPVPVSRYDSMRLSWLEVTPKQGRKHQIRRHFKHHLNPLVGDSCY 182 Query: 182 GDLRQNRSGAEHFGLQ-RLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 G N+ E + RLMLHAS L HP T +P+T+ A L D + L++ + Sbjct: 183 GCRHINKVAKELWSEDFRLMLHASSLEFNHPITNQPITLKADLSDKIINILNKLEY 238 >UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J2_MAGSM Length = 328 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 15/237 (6%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV--FTAHRLDRPTSGVLL 62 L++D W++ +NKP+G VH + V ++ +++G HRLD+ TSG+LL Sbjct: 101 LHRDGWILVLNKPAGIPVHGGSGHQWGVVDAVRASLEKLGIEAQAELCHRLDKETSGLLL 160 Query: 63 MGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAREDKG 121 GL A RLL + ++Q+ K Y +V+G + V++ PL + + ++ ++G Sbjct: 161 FGLRPRAVRLLTEAMRENQVTKTYLTLVQGVPAARQGVINQPLSKGNVRGGERMVVVEQG 220 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q AVTHYR L + + L+E++ +TGR HQ+R H+ L HP+ GD K+ Sbjct: 221 GQRAVTHYRVLRSYGV-----------ASLLEVQLETGRTHQIRVHMQWLGHPVAGDGKY 269 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRG 238 GD N+ E GL+RL LHAS+L+ HP + L A LDD + L + Sbjct: 270 GDKAFNKWMRER-GLKRLFLHASELAFRHPENEQKLAYQAPLDDELTRVLEGLKRQE 325 >UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium matruchotii RepID=C0E4Q3_9CORY Length = 310 Score = 269 bits (690), Expect = 5e-71, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 98/243 (40%), Gaps = 23/243 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR------DQIGQHVFTAHRLDR 55 LEILY DE L+AV+KP G H + VV + RLD Sbjct: 83 LEILYADEDLIAVDKPVGVAAHPTVGWDGPTVVGGLAAAGYRISTSGPPERNGIVQRLDV 142 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADK 114 TSGV+++ S +L + F++ + K YHA+V+G + ++ + Sbjct: 143 GTSGVMVVAASERGYSVLKRAFKERTVSKTYHALVQGHMDPLAGTIEANIGRHPSSGWKF 202 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 D + AVTHY L L+E+ +TGR HQ+R H++ L HP Sbjct: 203 AVTSD--GKHAVTHYETLEAFVA-----------ASLLEVHLETGRTHQIRVHMSALHHP 249 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD +G + + GL R LHA +L HP G L I + AL Sbjct: 250 CCGDPMYG---ADPQLSARLGLNRQWLHAVKLGFYHPADGRWLEIESPYPPDLRHALEVL 306 Query: 235 GWR 237 Sbjct: 307 RAE 309 >UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2W5F3_BACCE Length = 307 Score = 269 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 23/237 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR---DQIGQHVFTAHRLDRPTS 58 LE++++D+ ++ VNKP+ H S + + + V HRLD+ T+ Sbjct: 85 LEVIFEDDHVLIVNKPAHMDTHPSNKGGTGTLANLVAFHLQMQGVETKVRHIHRLDKDTT 144 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G ++ AG ++ + + I++ Y A+V G + ++ ++D + + + Sbjct: 145 GGVVFAKHGIAGVIMDRLLMERNIKRTYLALVEGKVRKKQGIIDEAIGRDRHHATRRRV- 203 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + AVTHY+ + LV L+ +TGR HQ+R H++H HP+IG Sbjct: 204 -SQKGDRAVTHYKIEKYFK---------KQDVTLVTLQLETGRTHQIRVHMSHSGHPLIG 253 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D +G + + LHA ++ HP T E +T+ A L + + F Sbjct: 254 DVLYGG--------QATYMPYQALHAMRIHFLHPITKEEITVEAPLPNNLNNIIESF 302 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 24/235 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH--VFTAHRLDRPTSG 59 ++ILY+D+ L+ NKP+G +VH + D V + V G+ V HRLD+ TSG Sbjct: 94 IDILYEDDHLLIANKPAGMMVHPIKQETDTLVHALAAVLAARGEQTSVHPVHRLDKDTSG 153 Query: 60 VLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFARE 118 +L+ SS +L + + I + Y A+ G L E +D P+ + + E Sbjct: 154 AILVAKSSYGHQLADRLLREGGIHREYLAVASGVLSEGAGTIDAPIGRDARHPTKRRVVE 213 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 PA+THY T E L + +TGR HQ+R H AH+ HP+ GD Sbjct: 214 S--GDPAITHYEVQQTSE-----------EMTLARVWLETGRTHQIRVHFAHIGHPLAGD 260 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 + +G R L+R LHAS+LS HP + + + A + + + Sbjct: 261 TMYGGARG--------LLRRQALHASKLSFLHPLLEKEIVVEAPIPSDMKRLMQA 307 >UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C n=5 Tax=Buchnera aphidicola RepID=RLUC_BUCBP Length = 315 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 13/232 (5%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILY+D + + +NKPSG VH + ++ +R +++ HRLDR TSGVL++ Sbjct: 95 ILYEDNYFLILNKPSGMSVHSGSGINYGMIENLRILRPY-NRYLDLVHRLDRDTSGVLII 153 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDKGP 122 R L +Q + +I+K+Y A+V G + + PL++ + + D Sbjct: 154 AKKRSILRNLHEQLREKKIKKKYVALVHGVWPDILKSISKPLLKTSSRKNKNIVKIDPKG 213 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 + ++TH+ L+ + P TGR HQ+R HL HL +PI+ D+K+G Sbjct: 214 KESITHFNIKKKYTKN-----------TLISITPITGRTHQIRVHLLHLNYPIVLDAKYG 262 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 + + F + RL+LHA ++ HP + + I A LD + L Sbjct: 263 IKKLDYFIKNKFNINRLLLHAESINFFHPKRKKNILITAPLDYVFKTVLKNL 314 >UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C n=22 Tax=Gammaproteobacteria RepID=RLUC_HAEIN Length = 322 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 107/234 (45%), Gaps = 14/234 (5%) Query: 3 EILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLL 62 +IL++D+ L+ +NKPSG VH + ++ +R + + HRLDR TSG+LL Sbjct: 99 QILFEDDCLIILNKPSGIAVHGGSGLNFGVIEALRALR-PEARFLELVHRLDRDTSGILL 157 Query: 63 MGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAREDKG 121 + A R L +Q +QK Y A+VRG V+ L++ ++ R + Sbjct: 158 IAKKRSALRNLHEQLRVKTVQKDYLALVRGQWQSHIKVIQASLLKNELSSGERIVRVSEQ 217 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 +P+ T + LV+ P TGR HQ+R H + HPI D K+ Sbjct: 218 GKPSETRFSIEERYI-----------NATLVKASPVTGRTHQIRVHTQYAGHPIALDDKY 266 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 GD ++ E GL RL LHA + HP GE L +A LD L + Sbjct: 267 GDKDFDKQMNE-LGLNRLFLHAFSIRFEHPKNGETLRFNASLDHQMKAILQKLR 319 >UniRef50_A5VJ18 Pseudouridine synthase, RluA family n=13 Tax=Lactobacillus RepID=A5VJ18_LACRD Length = 301 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 27/239 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDR-DEKVVV----MQTVRDQIGQHVFTAHRLDRP 56 ++I+Y+D+ + +NKP+G + + +V ++ Q A RLDR Sbjct: 78 IDIIYEDQDFLIMNKPAGVATVPAHNVPVADSLVNRVKGYYKRQNYENQVTHVATRLDRD 137 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG-WLMEEAVLDYPLVEELDKIADKF 115 TSG+++ A +L +Q ++H ++K Y A+++G E +D P+ + + + Sbjct: 138 TSGLVVFPKHRFAHAVLDEQLKKHLVKKNYLALIKGKVPAEHGYIDAPIQRDPNSFVKRM 197 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 K + +VT Y + L+++ TGR HQ+R H A L P+ Sbjct: 198 V--GKEGKASVTEYWRQEC-----------NVQASLIKIRLHTGRTHQIRVHFASLGFPL 244 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 IGD +G E + R LH LS PF G+ +T+ A L + A Sbjct: 245 IGDKMYG--------EESGLIARQALHCYWLSFYSPFKGKNITVSAPLPSDFKNAKDDL 295 >UniRef50_A1U2H1 Pseudouridine synthase n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U2H1_MARAV Length = 245 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 153/232 (65%), Gaps = 3/232 (1%) Query: 5 LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD-QIGQHVFTAHRLDRPTSGVLLM 63 +Y+D+WL+AV+KP+G LVHRS +D+ E +Q R G+HV+ HRLDRPTSGVLL Sbjct: 8 IYRDDWLLAVHKPAGLLVHRSPIDKHETEFALQYARAMNGGEHVYPVHRLDRPTSGVLLF 67 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 E R L + K Y A+VRGW E+ V+D+PL EE + K +++ + Sbjct: 68 ARDPETARALGLAMMAGAVSKTYLAMVRGWAPEQGVIDHPLREEPEDRRLKG--QEQPVR 125 Query: 124 PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD 183 A+T YR LAT E+PVA RYPT+RY LVEL+P+TGRKHQLRRH+ H+ HPIIGD+ HG Sbjct: 126 EALTRYRRLATTELPVAIERYPTSRYSLVELKPETGRKHQLRRHMKHINHPIIGDANHGR 185 Query: 184 LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 R NR AE FG RLML A++L L HP T EPL + A + +++Q L+ F Sbjct: 186 GRHNRYFAERFGQGRLMLAATELRLRHPVTDEPLCLKAHPESSFLQVLAIFE 237 >UniRef50_C8PZW5 Pseudouridine synthase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZW5_9GAMM Length = 266 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 133/266 (50%), Positives = 163/266 (61%), Gaps = 27/266 (10%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV 60 MLEILYQDE VAVNKP+G LVHRSWLDR E VMQT+RDQ+ Q+V+ HRLDRPTSGV Sbjct: 1 MLEILYQDEHCVAVNKPAGMLVHRSWLDRHETEFVMQTLRDQLAQYVYPIHRLDRPTSGV 60 Query: 61 LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM----EEAVLDYPLVEELDKIA---- 112 LL LSSE+ R L +QFE Q+QK Y AIVRG+L ++DYPL + LDKI Sbjct: 61 LLFALSSESARQLCEQFENRQVQKSYLAIVRGYLTVNAQTSGLIDYPLTQILDKIGDKPS 120 Query: 113 ------DKFAREDKGP------------QPAVTHYRGLATVEMP-VATGRYPTTRYGLVE 153 K + D QPA TH++ LAT E P A RYPT+R+ L Sbjct: 121 LQALQQRKVSSTDMFAEALSSPAELTLLQPAQTHWQCLATTEQPFQARARYPTSRFSLAR 180 Query: 154 LEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFT 213 L P TGRKHQLRRH+ H+ HPIIGD+ +GD QNR+ +H G+ RLMLHA L+ Sbjct: 181 LTPITGRKHQLRRHMKHVFHPIIGDTSYGDHHQNRAIRQHIGVHRLMLHAHTLAFNRLTD 240 Query: 214 GEPLTIHAGLDDTWMQALSQFGWRGL 239 + I A +D W+ +QFG+ Sbjct: 241 NRRVDITAPVDTDWLTMCAQFGFHLP 266 >UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales RepID=A6LDZ7_PARD8 Length = 549 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 107/234 (45%), Gaps = 35/234 (14%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L+ILY+D++L+ +NKP G L D D + + HRLD TSG+L Sbjct: 340 LDILYEDDYLLVINKPEGMLSVPGKGDADSVYQRLSILY-PEATGPIIVHRLDMATSGLL 398 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFAREDK 120 L + EA + L QF+ IQKRY A++ G + +E + PL + + E+ Sbjct: 399 LAAKTKEAHQNLQAQFKNRTIQKRYIALLEGEVPQDEGEIRLPLCPDPLDRPRQIVSEEF 458 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH---LRHPIIG 177 +PA+THYR L T+ L+ P+TGR HQLR H AH L PI+G Sbjct: 459 -GKPALTHYRVLER-----------TSGKTLIAFYPQTGRTHQLRVHAAHPLGLHCPILG 506 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH-------AGLD 224 D +G +RL LHA L+ THP T E + I + Sbjct: 507 DELYGRK-----------AERLYLHAEYLAFTHPITSERIEIQKSPAFPRCPMP 549 >UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELJ1_PEDAC Length = 301 Score = 267 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 23/237 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV----MQTVRDQIGQHVFTAHRLDRPT 57 ++++Y+D+ + VNKP +S ++ + +V RD Q V RLD+ T Sbjct: 78 IDVIYEDQDYLVVNKPPFLPTVQSARNQTDTLVNRVKNYYAERDYESQVVHVVTRLDQDT 137 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFA 116 SG++L A ++ Q QH++QK Y A+ G + ++D P+ + + Sbjct: 138 SGLVLFAKRRFAHTIMDQDLRQHRVQKYYLAMATGRFAQSHGLIDAPIERDPASFIKRRV 197 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 +P+ T Y L + L++++ TGR HQ+R H + L HP+I Sbjct: 198 ASAGNGKPSKTEYWVLEQTDTD-----------SLLKVQLHTGRTHQIRVHFSELHHPLI 246 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 GD + + LQR LH L + F G+ + + A + + ++ + Sbjct: 247 GDPLY-------NETSFRSLQRQALHCFSLKFENVFRGKKIDVQAPIPNDMLEYWKK 296 >UniRef50_UPI0001AEC02F pseudouridylate synthase, 23S RNA-specific n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC02F Length = 279 Score = 267 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 117/233 (50%), Positives = 153/233 (65%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L +LYQDE ++A+ KP G LVHRS +DR E V +QT+RDQIGQHV+ AHRLDRPTSGVL Sbjct: 42 LPVLYQDEHIIAIEKPPGLLVHRSPIDRHETVFAVQTLRDQIGQHVYPAHRLDRPTSGVL 101 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 + SSE L QQ Q+ K YHAIVRG++ +DY L DKIADK R + Sbjct: 102 VFSFSSEIAAKLGQQMMDKQVVKTYHAIVRGFVHHTGYIDYALKYRYDKIADKHKRPQQP 161 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 PQPA T Y+ +A E+P G+Y + RY LV+L P TGRKHQLRRH+ H+RHPIIGD+ H Sbjct: 162 PQPASTMYQSVAKFEVPEPVGKYQSARYSLVKLSPSTGRKHQLRRHMVHIRHPIIGDTTH 221 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD +QN+ +HF L L +Q+ +HP TG+ ++I++ + L + Sbjct: 222 GDGKQNKFAKQHFNFNNLALSCTQMGFSHPVTGKWVSINSQMHSEMRLWLEKL 274 >UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae RepID=A7H6D3_ANADF Length = 339 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 124/260 (47%), Gaps = 23/260 (8%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-------DQIGQHVFTAHRLDRP 56 +L++D ++AV+KP+G H +V M AHRLDR Sbjct: 87 VLHEDADVLAVDKPAGLAAHPGTGISGATLVEMARAHLGTPADLPPTEFKPSPAHRLDRD 146 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQH-QIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADK 114 TSGV+L+ + + L + F ++K Y A+V+G + E +D PL E K Sbjct: 147 TSGVVLVAKNRKTMVRLTELFTDGADVKKTYLALVKGKMPREAGTIDLPLAEHEQTARSK 206 Query: 115 FAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 AR Q A+T ++ ++ L+ + +TGR HQ+RRHL + HP Sbjct: 207 AARGV-NLQEALTRWKVVS-----------AMKEASLLAVTIETGRTHQIRRHLEAVGHP 254 Query: 175 IIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 ++GD ++GD NR+ + +GL+R+ LHA +L L HP TG PL + A L ++ALS+ Sbjct: 255 VLGDRRYGDFPTNRAARQRWGLRRMFLHAWRLELPHPTTGAPLRLEAPLPGELLEALSRA 314 Query: 235 GWRGLLPENERVEFSAPSGQ 254 P +AP G Sbjct: 315 NLSS--PAGTASGRAAPRGA 332 >UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M2K8_BACS4 Length = 298 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 25/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV---VMQTVRDQIGQHVFTAHRLDRPTS 58 L I+++DE ++ +NKP + + + + + + + I RLDR TS Sbjct: 83 LHIIFEDEHVIIINKPPHLPTIPTRNEGEPSLAGAILAYYIENGIPSTFHAVSRLDRDTS 142 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G++++ L + + ++I++ Y A+V G L ++ +D P+ + I ++ Sbjct: 143 GLVMVAKHRYMHDLCVKLQKSYEIKRSYVALVEGILSDDYNTIDLPISRKTTSIIEREV- 201 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 ++ + A+THY L + L++L +TGR HQ+R H++ + HP++G Sbjct: 202 -NEFGKSAITHYEVLKRY-----------SGATLLQLTLETGRTHQIRVHMSAIGHPLLG 249 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D+ +G + + R LH+ QLS HP T H + D A+S+F Sbjct: 250 DTLYGG--------DVRYIDRQALHSHQLSFFHPINKREYTFHCPIPDDIEDAMSKF 298 >UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J479_DESRM Length = 303 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 25/236 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L ILY+D L+AVNKP G LVH + + V+ ++ HRLDR TS Sbjct: 84 LNILYEDAHLLAVNKPPGMLVHPLTNETSGTLANGVLYHWLQQGTIDRFRPVHRLDRNTS 143 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G++L+ + + L Q +Q Q +RY A+V+G + E+ V+ P+ E + Sbjct: 144 GIVLIARNPYVQQQLQIQMKQGQFVRRYLALVKGKVQPEQGVIQAPIALEEGSFIKRMI- 202 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + A++HY+ L T + LV +E +TGR HQ+R H+AH+ HP++G Sbjct: 203 -SPAGKEAISHYQVLRTF-----------NQASLVRVELETGRTHQVRVHMAHMGHPLLG 250 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 DS +G N ++R LH + L+ HP G + I + Q + + Sbjct: 251 DSLYGGDTSN--------IKRQALHCAYLAFNHPVQGSRIKISCSVAGDIRQLMEE 298 >UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID=Q8ERS8_OCEIH Length = 322 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 24/237 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV---MQTVRDQIGQHVFTAHRLDRPTS 58 L+I+Y+D + + VNKP+G S R + ++ I V RLD TS Sbjct: 103 LDIIYEDAYCLVVNKPAGQACLPSMNHRHNTLANGLTYYYQKNSIPSTVHIVTRLDVNTS 162 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G++L+ + L ++ ++ I + Y AIV G + ++D P+ + I ++ Sbjct: 163 GLVLVAKNQYVHSLFSRMQQEGNINRVYEAIVHGEVSPTSGIVDAPIARKEGSIIERTVD 222 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + + A T+YR L Y + VE++ +TGR HQ+R H +L H + G Sbjct: 223 M-RNGKYAKTNYRVL-----------YADSIASWVEIKLETGRTHQIRVHFQYLGHSLYG 270 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D+ +G + + R LH Q+++ HP +P+ + A L + L + Sbjct: 271 DNLYGGSKD--------IMLRQALHCKQITMMHPIKNQPIQLEASLPEDMGILLKRL 319 >UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales RepID=B1XXM0_LEPCP Length = 369 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV---MQTVRDQIGQHVFTAHRLDRPTS 58 L ++++D L+ ++KP+G +VH + ++ HRLD+ TS Sbjct: 119 LAVVHEDAHLLVIDKPAGLVVHPAAGHWSGTLLNGLLAHHAAAAHLPRAGIVHRLDKDTS 178 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAR 117 G++L+ S +A L + +++ Y A+V G +M+ V+D PL + Sbjct: 179 GLMLVAKSLQAHTALVRAIAARDVKREYLALVHGAVMDGLQVIDAPLGRDPVSRVRMAIV 238 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTT------RYGLVELEPKTGRKHQLRRHLAHL 171 +PA T R LA E+P R + V + TGR HQ+R HLA Sbjct: 239 AS--GKPARTDVRRLAVAELPGDGVRQLPGATRAPRQVSAVHCQLHTGRTHQIRVHLASR 296 Query: 172 RHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH 220 HP++ D+ +G FGLQR LHA++L L HP G PL Sbjct: 297 GHPLLADAMYGGAP-------AFGLQRQALHAARLHLLHPIDGRPLAFE 338 >UniRef50_D2QPA6 Pseudouridine synthase n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QPA6_9SPHI Length = 244 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 111/233 (47%), Positives = 143/233 (61%), Gaps = 6/233 (2%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L ILYQD LVA+NKP G LVHRS + D +Q +RDQ+GQ V+ HRLDR T+GVL Sbjct: 11 LSILYQDTELVAINKPHGLLVHRSMIASDASEFAVQLLRDQLGQRVYPVHRLDRKTAGVL 70 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L LS ++ QQF + +QK Y AIVRG+ +E +DYPL ++ A Sbjct: 71 LFALSESMNAIMQQQFMEGAVQKTYLAIVRGYTPDELTIDYPLCKDDGNGAVGVL----- 125 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q AVTH + L E+PVA G++PT+RY LVEL P TGR HQLRRH+AH+ HPIIGD H Sbjct: 126 -QEAVTHLKTLRQTEIPVAFGKHPTSRYSLVELTPTTGRMHQLRRHMAHILHPIIGDRPH 184 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 G +QN+ EHF + ++LHA ++ THP T E TI A + + L Sbjct: 185 GCNKQNKLFKEHFEMNTMLLHAQRIEFTHPVTQETTTIAAPFQAEFRRMLGVL 237 >UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organisms RepID=Q3JQ55_BURP1 Length = 477 Score = 266 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 119/240 (49%), Gaps = 19/240 (7%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 EIL++D+ ++ +NKP+G VH + M+ R + + AHRLDR TSG+L Sbjct: 243 FEILFEDDAIIVLNKPAGVAVHGGSGVAFGVIEQMRHARPH-AKFLELAHRLDRETSGIL 301 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE----AVLDYPLVEELDKIADKFAR 117 ++ A L +Q ++++ KRY A V G + V+ PL + ++ R Sbjct: 302 MLAKKRSALVGLHEQIRENRMDKRYFACVHGDWAADWGRRRVVKAPLFKYATPDGERRVR 361 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + P+ T + + Y LVE E KTGR HQ+R HLAHL PI+G Sbjct: 362 VQEDGLPSHTVFNLVDRWP-----------DYALVEAELKTGRTHQIRVHLAHLGLPIVG 410 Query: 178 DSKHGDLRQNRSGAEH---FGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D+K+GD N++ A ++R+ LHA +L L HP TGEPL A L Q + Q Sbjct: 411 DAKYGDFALNKALARANAVPSIKRMFLHAHRLRLAHPLTGEPLQFDAPLPAECRQFIDQL 470 >UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZW0_9FIRM Length = 318 Score = 266 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 27/240 (11%) Query: 2 LEI--LYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD---QIGQHVFTAHRLDRP 56 +EI +Y+DE L+ ++KP+G +VH + + + + +RLD Sbjct: 94 IEINAVYEDEHLLVIDKPAGIVVHPTHGYEENTIAHALIHYMDTVGEEFKIRFINRLDMD 153 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKF 115 T+G+L++ + + + ++ ++KRY A+V G E ++D P+ + + Sbjct: 154 TTGLLMIAKNQFIQNAVVSEMKRGNVEKRYLAVVHGLPCNREGIIDAPIKAVEGEPRRQV 213 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 +G +P++T Y+ + G +++ TGR HQ+R HL H+ PI Sbjct: 214 M---EGGKPSITEYKVV---------GVSDELNVSFLDVRLHTGRTHQIRVHLKHIGCPI 261 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 +GD +G R +LH+ L THP + + + + A L D L+ Sbjct: 262 LGDEFYGGKES---------ADRQLLHSRYLRFTHPVSKKIVELTANLPDDIASILTHMQ 312 >UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZV48_9PLAN Length = 281 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 64/251 (25%), Positives = 97/251 (38%), Gaps = 28/251 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRD------QIGQHVFTAHRLDR 55 L+I+YQD+ + +NKP+G + H + + + HRLDR Sbjct: 39 LDIIYQDDRIAVINKPAGMITHPAKGHWKGTLTEGLKGQFPQLSTIGGPTRPGIVHRLDR 98 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELDKIADK 114 TSGV+++ A L QF+ +K Y A+V G + +++ P+ Sbjct: 99 DTSGVIVIAKDDAAHEFLKTQFQDRLTEKEYFAMVIGAPDRDRDLINEPVGPHPKIRERM 158 Query: 115 FARE-DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRH 173 R D + A T Y L + ++ PKTGR HQ+R HL H H Sbjct: 159 AIRRGDDEGKDAQTFYEVLERY-----------QGFAAIKALPKTGRTHQIRVHLMHAGH 207 Query: 174 PIIGDSKHGDLR------QNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 P++ D +G R L R LHA ++++ HP GE A L Sbjct: 208 PVLCDPLYGSRRFLSLGELQHDDDRTVLLNRTALHAHRIAIAHPDDGEIREFIAPLPADL 267 Query: 228 ---MQALSQFG 235 L Q Sbjct: 268 ERTQNMLRQLR 278 >UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C n=102 Tax=Gammaproteobacteria RepID=RLUC_YERPE Length = 320 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 111/233 (47%), Gaps = 14/233 (6%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 IL++D++L+ +NKPSG VH + ++ +R + + HRLDR TSGVLL+ Sbjct: 95 ILFEDDYLLVLNKPSGTAVHGGSGLSFGVIEGLRALR-PEARFLELVHRLDRDTSGVLLV 153 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAREDKGP 122 A R L +Q +QK Y A+VRG + PL++ + + ++ + Sbjct: 154 AKKRSALRSLHEQLRLKSMQKDYLALVRGQWQSHCKAIQAPLLKNIMQSGERVVKVSSEG 213 Query: 123 QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHG 182 +P+ T ++ E LV+ P TGR HQ+R H H HPI D ++G Sbjct: 214 KPSETRFKIEERFE-----------HATLVKASPVTGRTHQIRVHALHAGHPIAFDDRYG 262 Query: 183 DLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 ++ + GL RL LHA+ L HP TGE + I A LD+ L Sbjct: 263 YREFDQQL-QGTGLHRLFLHAAALRFEHPNTGETMRIEAPLDNQLRHCLLALR 314 >UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHV8_9CLOT Length = 299 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 24/236 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH---VFTAHRLDRPTS 58 +I Y+D+ L+ VNKP+G VH S ++ + + + +RLDR TS Sbjct: 80 FDIAYEDDDLLLVNKPAGTPVHPSPGHYEDSLANYSAWQYAQRREQLVFRPVNRLDRGTS 139 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G+L + ++ A L+QQ ++ Y+A+V G +D P+ + + Sbjct: 140 GLLCVAKNAHAQARLSQQLHTGAFERIYYAVVCGAPSPAAGTIDLPIGRTPGSVLKRRV- 198 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 D AVTHY + Y L+++ +TGR HQ+R H AHL P+ G Sbjct: 199 -DPQGARAVTHYETVR-----------VNGAYTLLKIRLETGRTHQIRVHFAHLGCPLFG 246 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 D +G R++ ++ LH+ ++ L HP +GE + L + Sbjct: 247 DFLYGTERRDV-------VEGHALHSGEIRLLHPISGEEIRCSVPLPAYMENLMDN 295 >UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZX3_ERYRH Length = 298 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 99/238 (41%), Gaps = 24/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ----HVFTAHRLDRPT 57 ++++Y+DE+L+ VNKP G +VH + + ++ HR+DR T Sbjct: 77 IDVVYEDEYLLVVNKPRGLVVHPGNGVKSDTLLHGLLYYLNSNCDHYIRPGLVHRIDRNT 136 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAV-LDYPLVEELDKIADKFA 116 SG+L++ + + LA+Q + + Y+A+V G L + V +D P+ + Sbjct: 137 SGLLVIAKDDKTHQFLAEQLLDKTMNRTYYALVHGVLPQAHVLIDAPIGPDKSN-TKIMT 195 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 +PA TH+ + T L+ + +TGR HQ+R H H P+ Sbjct: 196 VNQARSKPARTHFEKIETYINS-----------SLICCKLETGRTHQIRVHALHANIPLH 244 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD ++G L A++L HP + + L + +++ Sbjct: 245 GDPQYGHPSDTDKT-------GQYLCAARLEFVHPKYLKLMQFEIPLPRYFQDKITEL 295 >UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBB6_WEIPA Length = 305 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 25/235 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV---MQTVRDQIGQ-HVFTAHRLDRPT 57 ++ILY+DE + V+K +G DR+ +V + + RLDR T Sbjct: 79 IKILYEDENWLVVDKVAGVTSVPGKADRETTMVNRVKGYLISEGAEDLVPHVVTRLDRFT 138 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFA 116 SGV L+ A LL +Q + H + KRY+AIV G + ++ +D P+ + + Sbjct: 139 SGVALLAKHRFAHGLLDKQLQTHTVDKRYYAIVDGIVPDDHGFIDAPIGRMDNDFIRREV 198 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 R D +P+ T Y + + LV+++ TGR HQ+R H ++ HP+I Sbjct: 199 RAD--GRPSQTEYWVVNRMPNQ-----------TLVKVQLHTGRTHQIRVHFKYIGHPLI 245 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 GD +G G++R LHA L PF+ I + L + Q L Sbjct: 246 GDEIYGG-------PMDRGIERQALHAYWLEFYDPFSEIKRHIQSPLPEDLKQIL 293 >UniRef50_Q03EW7 Pseudouridine synthase n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03EW7_PEDPA Length = 253 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 106/237 (44%), Gaps = 23/237 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVM---QTVRDQIGQHV-FTAHRLDRPT 57 +++ Y+D + VNKP +S ++ + +V V++ V RLD+ T Sbjct: 28 IDVRYEDADYLIVNKPPFLPTVQSAANQKDTLVNRVKNYYVKNNYESRVVHVVTRLDQDT 87 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLM-EEAVLDYPLVEELDKIADKFA 116 SG+++ A ++ Q Q +I K Y IV G + +++ P+ + D + Sbjct: 88 SGLVIFAKHRFAHTVMDQDLRQRKINKMYLTIVEGTFTNQHGIIETPIQRDPDSFIKRMV 147 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 +P++T Y T + + L++++ +GR HQ+R H + + HP++ Sbjct: 148 APMGEGKPSLTEYWVEDTFK-----------NFTLLKVKLHSGRTHQIRVHFSSIGHPLV 196 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 GD +G + + LQR LH L+ + FT + + I + D ++ ++ Sbjct: 197 GDELYGGMAND-------ILQRQALHCFSLTFKNVFTEKMIDIKTSIPDDMLEYWNK 246 >UniRef50_C6VVP1 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C6VVP1_DYAFD Length = 228 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 106/236 (44%), Positives = 143/236 (60%), Gaps = 11/236 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEILY+ + LVA+NKP+G LVHRS + D V +Q +RDQ+ Q V+ AHRLDR TSGVL Sbjct: 4 LEILYRSDDLVAINKPNGLLVHRSPIASDADVFAVQLLRDQLSQKVYPAHRLDRKTSGVL 63 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L L+ + +F + +I K YHAIVRG + +DYPL + D Sbjct: 64 LFALNENVNSEMQGKFMEGEITKTYHAIVRGHTADRGEIDYPLKRD-----------DGV 112 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q AVTH+ LA E+P A G++ T+RY LV+L P TGR HQLR+H+AH+ HPIIGD H Sbjct: 113 TQDAVTHFETLARAEVPFALGKHATSRYSLVQLNPLTGRMHQLRKHMAHIMHPIIGDRPH 172 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 G +QNR E G+ ++MLHA + HP +G+ +TI A +++ S G Sbjct: 173 GCNKQNRFFKEELGMIQMMLHAVSVEFVHPVSGQHVTIVAPYLSEFVRMRSVLGLE 228 >UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S119_FINM2 Length = 307 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 25/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHV------FTAHRLDR 55 L+++Y+D++L +NK +VH + + +V + V HRLD+ Sbjct: 77 LDVVYEDDYLAIINKDKDVIVHPTETIYSDTLVNYLMYNFKNLSDVDGDYRRGIVHRLDK 136 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 T+G++++ ++ L + + H+I K Y IV G + E + + Sbjct: 137 DTTGLIIIAKDNDTHLKLKEIIKNHEIIKTYLCIVHGKIDESGTIKEYMTRNPKDRKKMM 196 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 ++ + +++ Y L Y LV+++ KTGR HQ+R H+ ++ HPI Sbjct: 197 VSDE--GKLSISQYERLDY-----------NDDYSLVKVQIKTGRTHQIRVHMNYIHHPI 243 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 +GD +G + E +LHA L HP T E + + L +M A+ + Sbjct: 244 LGDKLYGLKK------EKILFDSQVLHAYNLQFIHPQTHEKINVIGKLKPDFMTAIEK 295 >UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K7_HALNC Length = 346 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 76/240 (31%), Positives = 116/240 (48%), Gaps = 19/240 (7%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 I+Y+DE L+AVNKP+G VH + +M+ +G+ + AHR+DR TSG+L++ Sbjct: 111 IVYEDEALLAVNKPAGLAVHGGSNIPFGLIELMR-QHTGLGEKLELAHRIDRDTSGLLIL 169 Query: 64 GLSSEAGRLLAQQFE-QHQIQKRYHAIVRGWLMEE-AVLDYPLVEELDKIADKFAREDKG 121 + L QF + +K+Y AIV G ++ +D PL + + + + Sbjct: 170 AKTRATLHSLQTQFRPEGHAEKQYLAIVHGHWPDKLKRVDAPLEKWQGEGESHRVQVNPQ 229 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + AVTH+ LA L+ + +TGR HQ+R H AH HPI+GD K+ Sbjct: 230 GKEAVTHFAVLA-----------ANKNATLLRAQLETGRTHQIRVHTAHENHPIVGDEKY 278 Query: 182 GDLRQNRSGAEHFGL-----QRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 G ++ G L+LHA +L LTHP T +PL + A + D W Q Sbjct: 279 GQREWDKRLFPSTGASARRRPPLLLHAYRLMLTHPQTEQPLQLTAPIPDKWRSLAQQLNL 338 >UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0R5_UNCTG Length = 296 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 17/222 (7%) Query: 12 VAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGR 71 V VNK SG +VH S+ ++ + + HRLD+ TSGV++ + +A Sbjct: 88 VVVNKRSGIVVHPSYGHLSGTLLNALMGYSAGKYNPYLIHRLDKDTSGVIVFAKTEKAKI 147 Query: 72 LLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDKGPQPAVTHYR 130 +++Q ++ ++K Y+A V+G + E ++ PL + A+T ++ Sbjct: 148 SISKQLQKRVVKKIYYAAVKGVIAENRGIIKAPLGRSPKNRKLVSVNPLAK-KVAITEFK 206 Query: 131 GLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSG 190 + Y L+++ TGR HQ+R H+ ++ HP+IGD ++G Sbjct: 207 VIER-----------KDDYTLLKVRIITGRTHQIRSHMKYINHPVIGDKQYGGPGTIGLK 255 Query: 191 AEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 +R MLHA ++ THP T + + A L + Sbjct: 256 R----CERQMLHAHNITFTHPSTSKTVKFIAQLPNDMKAIFK 293 >UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepID=Q63E77_BACCZ Length = 307 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 101/238 (42%), Gaps = 23/238 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ---IGQHVFTAHRLDRPTS 58 L ++Y+D+ ++ VNKP H S + + Q + V HRLD+ T+ Sbjct: 85 LHVVYEDDHVLIVNKPEKMDTHPSEKGGMGTLANLVAFHFQMQGLETKVRHIHRLDKDTT 144 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAR 117 G ++ AG ++ + + +I++ Y A+V G + + + +D + + + Sbjct: 145 GGVVFAKHRIAGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRV- 203 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 A+T+Y+ + LV L+ +TGR HQ+R H+++ +P++G Sbjct: 204 -SPKGDQAITYYKVEEYFK---------KQNVTLVTLQLETGRTHQIRVHMSYNGNPLVG 253 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFG 235 D +G + + R LHA +++ HP T E + + + F Sbjct: 254 DVLYGGGTK--------YMSRQALHAMKINFLHPITKEEIEVDVPFPTKLNDTMKAFQ 303 >UniRef50_A9BZ16 Pseudouridine synthase n=9 Tax=Burkholderiales RepID=A9BZ16_DELAS Length = 319 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 124/270 (45%), Positives = 157/270 (58%), Gaps = 18/270 (6%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L IL++DE LVAV KP+GWLVHR+ LD E V+QT+RDQ+G HV+ AHRLD+ T GVL Sbjct: 51 LHILWRDEHLVAVYKPAGWLVHRTGLDAHETRFVLQTLRDQLGCHVYPAHRLDKGTCGVL 110 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 +M L ++A + L Q F +++K+Y A+VRGWL + +D+ L + A ED Sbjct: 111 VMALHAQAAQRLGQAFAGQEVRKQYLALVRGWLPDAVEVDHALRPDD-------APEDAP 163 Query: 122 PQPAVTHYRGLATVEMPVA-TGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 QPA T R LA +E P A R+ TR LVE P TGR+HQ+RRHL H+ HPIIGD+ Sbjct: 164 AQPAQTSLRCLARLEWPEAFDPRHAATRISLVEALPATGRRHQIRRHLKHVAHPIIGDAT 223 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGL--------DDTWMQALS 232 HG NR AE GLQRL LHA L L HP TGEPL A W + Sbjct: 224 HGKGPLNRWWAERLGLQRLWLHAHALELAHPMTGEPLRFEADWRQLGHVADVQHWRALCA 283 Query: 233 QFGWRGL--LPENERVEFSAPSGQDGEISS 260 GW+ LP R + +A +G G S Sbjct: 284 LPGWQACAGLPATARPDQTASAGAPGSGCS 313 >UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia muelleri RepID=A8Z5T0_SULMW Length = 337 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 100/246 (40%), Gaps = 22/246 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVF-----TAHRLDRP 56 + I Y+DE+++ +NK SG +VH + ++ ++++ HR+D+ Sbjct: 101 INIFYEDEYVIIINKQSGLVVHPGKGNESMTLINGLHFYFLKKKNIYNKIPILVHRIDKG 160 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKF 115 TSG++L+ + +QF + I+++Y +V G++ + + + L Sbjct: 161 TSGLILVAKDKNILEKIYKQFYINHIKRKYITLVWGYIKNNKGTIICNIGRSLKNRIYMN 220 Query: 116 AREDK-GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHP 174 + + ++THY+ L + L++ +TGR HQ+R HL ++ HP Sbjct: 221 VFPNGIYGKFSITHYKVLERFKY-----------VTLLKCTLETGRTHQIRVHLKYIGHP 269 Query: 175 IIGDSKHGDLRQNRSGAE----HFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQA 230 I+ D +G + ++ LHA + HP + + D Sbjct: 270 ILNDKDYGGNHTFKEKKNIKKLFINMKYQALHAYYIEYIHPIYRKKNYFICPIPDRIKFL 329 Query: 231 LSQFGW 236 + Sbjct: 330 IKNLRL 335 >UniRef50_A7I2U9 Pseudouridine synthase n=23 Tax=Campylobacterales RepID=A7I2U9_CAMHC Length = 357 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 22/250 (8%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQ------IGQHVFTAHRLDR 55 +EILY+D+ L+ +NKPSG +VH + ++ + + + HRLD+ Sbjct: 90 IEILYEDDDLLVLNKPSGVVVHPAKSVKEPTLAEWLKQKKYMLSSINGDERAGIVHRLDK 149 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKF 115 TSG +L+ + A LA Q + + + Y A + L E +D + K Sbjct: 150 QTSGAILVAKTDFAHVKLAAQLKDKSMGRIYLAFLDLALKENVCVDRFIARNPSNRLKKA 209 Query: 116 ARE--DKGPQPAVTHY------RGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 + G + A + + L + T + L+ + TGR HQ+R H Sbjct: 210 VVPPNENGARSAKSAFLNIANDTILQNFK--PLNFSQNQTNFNLIAAKLFTGRTHQIRVH 267 Query: 168 LAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 L+ + IIGD +G ++ ++R+ LHA L THP T + I A + + Sbjct: 268 LSSINRHIIGDFLYG------FKSDFDKIKRIFLHAYLLYFTHPRTNRQILISAKIPSEF 321 Query: 228 MQALSQFGWR 237 + + ++ Sbjct: 322 KNLIEKSDFK 331 >UniRef50_C4ZAQ6 Pseudouridine synthase n=15 Tax=Clostridiales RepID=C4ZAQ6_EUBR3 Length = 295 Score = 264 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 21/233 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFT---AHRLDRPTS 58 L+I Y+D+ ++ +NKP H S + D + F +RLDR T+ Sbjct: 81 LDIAYEDDDIIVINKPFDMPAHPSAGNHDNTLANALMYYYGSQNKPFVYRCINRLDRDTT 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+ ++ + AG +L + I + Y+A+ G + P+ + ++ Sbjct: 141 GLTIVAKHALAGGILGNAVAKRAIHRTYYAVCSGCTPACMRISAPIARKDASTIERCVDF 200 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 K + AVT + + P LV+L TGR HQ+R H+ ++ P+IGD Sbjct: 201 -KRGEYAVTDFIRIKY---------NPDNNLSLVKLRLLTGRTHQIRVHMKYIGFPLIGD 250 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 + ++ + R LH+ +L THP TG+ + + + + Sbjct: 251 FLY--------NPDYTYISRQALHSGRLVFTHPVTGQKMNLISDIPSDMKSLF 295 >UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Methanococcus RepID=A4FXG9_METM5 Length = 298 Score = 264 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 26/238 (10%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQ---HVFTAHRLDRPT 57 +L ++Y+D+ L+ V+KP +VH + + + +I + +RLD T Sbjct: 81 LLCVIYEDDDLLIVDKPKNMVVHPTKNVLSGTLANAISNHQKINNQNYKIRFVNRLDMDT 140 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFA 116 +G+L++ +S + + LA+Q ++ ++K Y +V G L +E V++ + D I + + Sbjct: 141 TGLLIIAKNSYSHQQLAKQMDEGILEKIYIVVVNGHLDSKEGVIEDSIDLNDDGIKRELS 200 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 + + T Y+ + ++E++ TGR HQ+R HL+ + II Sbjct: 201 TF---GKISKTKYKVIEEF-----------NNVSVLEIKLLTGRTHQIRVHLSSFGNNII 246 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD+ +G ++R LH+ L HP T E + I + L D + Sbjct: 247 GDTLYGKTAD--------LIERQALHSHILRFIHPITKENMEIRSKLPDDMENLIKNL 296 >UniRef50_B9DS29 Pseudouridine synthase n=85 Tax=Firmicutes RepID=B9DS29_STRU0 Length = 301 Score = 264 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 28/241 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV----MQTVRDQIGQHVFTAHRLDRPT 57 L+I+Y+D+ + +NKP G+ S + + ++ + V RLDR T Sbjct: 76 LDIVYEDDHFLVLNKPVGYASIPSAIH-SNTIANFIKAYYFEQNYPNKQVHIVTRLDRDT 134 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW--LMEEAVLDYPLVEELDKIADKF 115 SG++L A L +Q ++ I+KRY A+V G L + + P+ D I + Sbjct: 135 SGLMLFAKHGYAHARLDKQLQKRSIEKRYFALVSGNGQLPDFGEIVEPIGRSKDSIITRT 194 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 D + A T Y +A V LV+++ TGR HQ+R H +H+ P+ Sbjct: 195 V--DPMGKYAKTTYEVVARFAENVH----------LVDIKLHTGRTHQIRVHFSHIGFPL 242 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFT-GEPLTIHAGLDDTWMQALSQF 234 +GD +G G++R LH LS +PFT E + L + + + Sbjct: 243 LGDDLYGGR-------MDLGIERQALHCHFLSFFNPFTENESIH-TINLTEDFENVIIDL 294 Query: 235 G 235 Sbjct: 295 Q 295 >UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whipplei RepID=Q83G23_TROWT Length = 303 Score = 264 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 20/238 (8%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPT 57 +L ++Y D+ L ++KP+G H S V + HRLD T Sbjct: 75 LLRVIYSDDDLFVIDKPAGVAAHASPGWCGPTVTGCLSGLLAACGPQDRQGIVHRLDANT 134 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFA 116 SG++++ S A L F I KRY A+V+G+ V++ P+ +L Sbjct: 135 SGLMVLAKSDLAYHNLKAAFRDRAIHKRYKALVQGYPDPSSGVINAPIGRDLKHRDRFCI 194 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 D + AVT Y + L+ + PKTGR HQ+R H + LRHP++ Sbjct: 195 --DYSGRDAVTQYSTEEVYP-----------GFTLLSVAPKTGRTHQIRVHFSALRHPLV 241 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD K+G + ++ L+R LHA LS THP +G + + + + ++L Sbjct: 242 GDVKYG---ADPVFSQKVNLKRQWLHAYHLSFTHPVSGVFVEFESRIHEDLQESLRIL 296 >UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=B8I750_CLOCE Length = 299 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 22/237 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVV---MQTVRDQIGQHVFTAHRLDRPTS 58 L+++Y+DE ++ +NK SG +VH + D + + + + V RLDR TS Sbjct: 79 LDVIYEDECMLVLNKQSGIVVHPTSYHPDNTIANGIVYYLKQKGVTKKVRPVSRLDRETS 138 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAR 117 G+++ + +L QQ + +K Y IV+G E ++ P+ + I + Sbjct: 139 GIIIFAKNQFTQEMLIQQMHNNLFKKEYLGIVQGIPQNNEGTINLPIARKPGSIMLRHI- 197 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 + P++THY+ L T P+ L+ + +TGR HQ+R H + PI G Sbjct: 198 -SEEGAPSITHYKILKTF---------PSHNSALLSFKLETGRTHQIRVHCKAMGFPIYG 247 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 D+ + D + + R LH+ + + HP T + + A L L Sbjct: 248 DTLYSDN-------TNLFISRQALHSYRTEIIHPVTLKGVIFKAELPSDISGLLEIL 297 >UniRef50_Q1WS43 Pseudouridine synthase n=3 Tax=Lactobacillus RepID=Q1WS43_LACS1 Length = 296 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 25/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR-DQIGQH---VFTAHRLDRPT 57 L+I+Y+D + V+KP +R + +V Q RLDR T Sbjct: 77 LDIIYEDSNWLVVDKPPLLSSVPGPSNRTDTLVNRVKFHLWQQKSKDLVPHVITRLDRDT 136 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFA 116 SG++L+ A L+ +Q E+H I K+Y A+V G + + ++D PL + I Sbjct: 137 SGLVLVAKHRFAQGLINKQVEEHSIDKKYLAVVEGIITEKHGIIDKPLGPRENGIGQMVT 196 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 + A T Y + + LVE + TGR HQ+R H + + H ++ Sbjct: 197 D---TGKIAKTEYWVREYL----------GDKATLVECKLHTGRTHQIRAHFSSINHALV 243 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD +G +GL+R LHA QL+ PFT E + + + + Sbjct: 244 GDELYGGR-------LDWGLERQALHAYQLAYVDPFTQEEKLFKSEMPKDLENLIVRL 294 >UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 Length = 299 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 22/236 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEI+++D+ L+ +NKPSG LVH + + + + HRLD+ TSG++ Sbjct: 79 LEIVFEDQDLLVINKPSGMLVHPTSFQEQNTLANALKHYLKTDDF-YITHRLDKNTSGLI 137 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA---VLDYPLVEELDKIADKFARE 118 ++ + +A L QQF Q ++K Y+AIV +++ P+ + Sbjct: 138 VICKNQKALCCLQQQFMQKTVKKSYYAIVHNRFDMHHLHFMINEPIGHSYQDKLRMKTGD 197 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 K + A++ + + LVE+ TGR HQ+R H+ H+ HPI D Sbjct: 198 AKNVKEAISIVKVIEQY-----------QNTALVEVSIITGRTHQIRVHMRHINHPIYND 246 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 +G + LH+ +S HP T E + + + ++ + ++ Sbjct: 247 PLYGISKHTTPYE-------QYLHSFYISFIHPSTNEIVEFKTLMPNEFINLIKEW 295 >UniRef50_Q057H9 Pseudouridine synthase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057H9_BUCCC Length = 321 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 23/244 (9%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG---QHVFTAHRLDRPT 57 L I+++D ++ +NKP+ ++VH + + ++ HRLDR T Sbjct: 85 FLNIIFEDSEILIINKPTNFVVHLGYGNTSGTLLNALIFHYPDNLLIPRAGIVHRLDRNT 144 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAR 117 +G+L++ + L F++ +I K Y IV G + + ++ P+ ++ Sbjct: 145 TGILVVAKTISTYYFLINLFKKRKIIKEYDVIVIGRIEVDGKIEKPIKRDIYNRTKMTV- 203 Query: 118 EDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIG 177 G + A+T+Y + + + + ++ KTGR HQ+R HL+ + HP++G Sbjct: 204 -GIGGKQAITYYSVITIFK-----------NHTYLRIQLKTGRMHQIRVHLSSIFHPVLG 251 Query: 178 DSKHGDLRQNRSGAEHFGLQ-------RLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQA 230 D + ++ ++ R LHA L+ HP T + + Sbjct: 252 DKIYSKGIKSNFSNCSKKMKNFLSKFNRPALHARMLNFIHPKTNKKKNWIIYPPKDMLSL 311 Query: 231 LSQF 234 ++ Sbjct: 312 INVL 315 >UniRef50_Q38W13 Pseudouridine synthase n=4 Tax=Lactobacillus RepID=Q38W13_LACSS Length = 300 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 26/235 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH----VFTAHRLDRPT 57 +++LY+D++ + VNKP+G + + ++ Q RLD T Sbjct: 79 IKVLYEDDYWLVVNKPAGLATIPGPTNTTDTLLNRIKGYWQQNGATDLVPHIITRLDFDT 138 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELDKIADKFA 116 SG++L A LL Q EQHQ+QK Y A+V G L E + P+ + + Sbjct: 139 SGIVLAAKHQVAQSLLQPQIEQHQLQKFYLAVVAGTGLPEFGTIKAPIGRVGVEPRRRVI 198 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 Q A T Y LA E R +++++ TGR HQ+R HL+ L HP++ Sbjct: 199 ---ADGQSAWTDYWRLAQDE-----------RLTVLKVQIHTGRTHQIRVHLSDLDHPLV 244 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 GD + G +G+ R LHA QL+ PF+ + A + L Sbjct: 245 GDQLY-------EGPLGWGIDRQALHAYQLTFNDPFSQQKRQFTAPIPADIQAIL 292 >UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae RepID=Q2IJ40_ANADE Length = 353 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 99/263 (37%), Gaps = 27/263 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR---------DQIGQHVFTAHR 52 L +L++D L+ ++K G +VH + VV R D + HR Sbjct: 100 LAVLHEDADLIVLDKAPGMVVHPARGTPHSTVVNALLHRLGLPAAAGPDGALPRLGLVHR 159 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIA 112 LD+ TSG L++ + A L Q++ ++K Y A+ G L LD P Sbjct: 160 LDKDTSGCLVVAKTEAALAALQAQWKGRSVEKVYLALCHGALAAAGRLDTPYGRHPRDRL 219 Query: 113 DKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 R + A+T +R L E+ TGR HQ+R HL+ Sbjct: 220 RFTGRL-ASSRRAITEWRVREAF----------GPAASLAEVTLHTGRTHQIRVHLSEAG 268 Query: 173 HPIIGDSKHGDLR-------QNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDD 225 HP++GD+ +G R + + + R LHA +L L HP TG L + A + Sbjct: 269 HPLLGDAVYGGTRREARLAPDDPARRAAEAVGRQALHALRLGLDHPRTGRRLVVEAPVPA 328 Query: 226 TWMQALSQFGWRGLLPENERVEF 248 AL Sbjct: 329 DLRAALEILRAAQPGNAGPAPRR 351 >UniRef50_A4BJ00 Pseudouridine synthase n=1 Tax=Reinekea blandensis MED297 RepID=A4BJ00_9GAMM Length = 249 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 107/243 (44%), Positives = 144/243 (59%), Gaps = 5/243 (2%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVM-----QTVRDQIGQHVFTAHRLDRP 56 L I+Y+D+ L+ V+KPSG L+H SWLDR E + + G V T HRLDRP Sbjct: 4 LNIVYEDDVLLVVDKPSGLLMHPSWLDRRETDTLAGRAKAYLAQQSEGAKVHTVHRLDRP 63 Query: 57 TSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFA 116 TSG+++M A + L +QF++ + KRY AI RG+ LDYPL+EE D+IADKFA Sbjct: 64 TSGLVVMCKDDHAAKALVEQFQEKTVNKRYWAICRGFAPVAETLDYPLIEEHDRIADKFA 123 Query: 117 REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPII 176 DK Q A+T +R L E+ + RYP R +E P TGRKHQ+RRHL HLR+PI+ Sbjct: 124 DSDKPAQEAITEFRRLGITELAIPVSRYPKMRLSWMECVPVTGRKHQIRRHLKHLRYPIL 183 Query: 177 GDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGW 236 GD++HG NR+ FG + L A ++S HP T E +T + G D+ W L + GW Sbjct: 184 GDTRHGCRHLNRAVEGSFGELFMGLRAVEMSFQHPVTNELMTFNVGADNVWSCWLDRLGW 243 Query: 237 RGL 239 Sbjct: 244 SFP 246 >UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BL50_9LACT Length = 296 Score = 262 bits (672), Expect = 6e-69, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 106/238 (44%), Gaps = 26/238 (10%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQH----VFTAHRLDRPT 57 L+IL++D++L+ VNKP G S L D+ + Q + RLDR T Sbjct: 77 LDILFEDDYLLIVNKPQGTASIPSQLHPDQSMANRVKGYLQTTRTQDCVTHVVTRLDRDT 136 Query: 58 SGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIV--RGWLMEEAVLDYPLVEELDKIADKF 115 +GV++ + Q IQK YHAIV + L E ++D P+ D I ++ Sbjct: 137 TGVMMFAKHRVVHAWMDQALRNKTIQKTYHAIVTKQDVLKEHDLIDAPIGRTDDSIINRC 196 Query: 116 AREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPI 175 R D +P++T Y T + LV++ TGR HQ+R H + L P+ Sbjct: 197 VRPD--GKPSLTEYWLEETYQHSQ-----------LVKIRLHTGRTHQIRVHFSWLGCPL 243 Query: 176 IGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQ 233 +GD +G + L R LH SQL HP TGE + + A L + + + Sbjct: 244 LGDDLYGGEKIEP-------LMRQALHCSQLDFVHPMTGEKMCVKALLPKDMAEWIEK 294 >UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB48_PLALI Length = 325 Score = 262 bits (672), Expect = 6e-69, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 111/252 (44%), Gaps = 28/252 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR------DQIGQHVFTAHRLDR 55 LEIL++D+ L+ +NKP+G + H + D ++ + HRLDR Sbjct: 82 LEILFEDDSLLVINKPAGLIAHPTGEIPDGTLINAVQHYLDKQSTHPGLERPGIVHRLDR 141 Query: 56 PTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEA-VLDYPLVEELD-KIAD 113 TSG + + + RLL+ QF+ +I K Y A+V G L ++ V+D P+ A Sbjct: 142 DTSGAMAICKEHLSHRLLSIQFQLGRISKSYLALVEGVLTDDQLVIDLPIGRAPGCSSAL 201 Query: 114 KFAREDK-GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLR 172 R D Q + T R + ++ LVE +P+TGR HQ+R HLA + Sbjct: 202 MSCRADALEAQASKTSLRVVERFP-----------QHTLVEAKPRTGRMHQIRIHLATIG 250 Query: 173 HPIIGDSKH--GDL------RQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 PI+GD + G ++ + R LHA+ LS HP T E A L Sbjct: 251 FPIVGDEFYLKGGEIRPLVWPESERVQVSLLINRQALHAACLSFAHPLTNEWQDFQAPLP 310 Query: 225 DTWMQALSQFGW 236 D QA+ Sbjct: 311 DDLRQAIELARL 322 >UniRef50_B4RVP9 Pseudouridine synthase n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RVP9_ALTMD Length = 265 Score = 262 bits (671), Expect = 8e-69, Method: Composition-based stats. Identities = 115/233 (49%), Positives = 150/233 (64%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L +LYQDE ++A++KP G LVHRS +D+ E V +QT+RDQIGQHVF AHRLDRPTSGVL Sbjct: 28 LPVLYQDEHIIAIDKPPGLLVHRSPIDKHETVFAVQTLRDQIGQHVFPAHRLDRPTSGVL 87 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 + S++ L +Q Q+ K+YHAIVRG++ +DY L DKIADK R + Sbjct: 88 VFSFSADTAAKLGKQMMDKQVVKQYHAIVRGFVHHTGYIDYALKYRYDKIADKHKRPQQP 147 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 PQPA T Y LA ++P GRY + RY LV L P TGRKHQLRRH+ H+RHPIIGD+ H Sbjct: 148 PQPASTMYESLAKFDVPEPVGRYQSARYSLVRLSPSTGRKHQLRRHMVHIRHPIIGDTTH 207 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQF 234 GD +QN+ HF L L +Q+ +HP T + +TI+ + Q + Sbjct: 208 GDGKQNKFAKSHFNFTHLALSCTQMGFSHPVTQKWITINGEMHSEMRQFTDRL 260 >UniRef50_A9GBV3 Pseudouridine synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GBV3_SORC5 Length = 345 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 67/260 (25%), Positives = 104/260 (40%), Gaps = 35/260 (13%) Query: 1 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTV-----------RDQIGQ-HVF 48 ++ ++Y+DE L+ ++KP+G +VH + +V RD +G Sbjct: 90 VIPVVYEDEHLLVIDKPAGLVVHPARGHASGTLVNGLLALPGFALAPADPRDPMGHVRPG 149 Query: 49 TAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEEL 108 HRLDR TSG+L++ L +F +H I++ Y AIV G +A D Sbjct: 150 IVHRLDRGTSGLLVVAKDEPTREALKDRFARHAIEREYAAIVAGE-ARDATYDTLHGRHP 208 Query: 109 DKIADKFAREDKGP----------QPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKT 158 + G + AVTH R + + +V +T Sbjct: 209 TDRLRFTSWIRGGAGAPGSHVAAPRRAVTHVRVIERL----------GDAATVVACSLET 258 Query: 159 GRKHQLRRHLAHLR-HPIIGDSKHGDLRQNRSGAE-HFGLQRLMLHASQLSLTHPFTGEP 216 GR HQ+R HLA P++GD +G + + L R LHA L HP T +P Sbjct: 259 GRTHQIRVHLAERGRTPVLGDPLYGKPPKKPAVRAIAEELGRQALHARVLGFIHPATQKP 318 Query: 217 LTIHAGLDDTWMQALSQFGW 236 + + L +AL Q Sbjct: 319 VRWESALPADMRKALDQLRA 338 >UniRef50_Q1N5G6 Pseudouridine synthase n=1 Tax=Bermanella marisrubri RepID=Q1N5G6_9GAMM Length = 236 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 110/234 (47%), Positives = 144/234 (61%), Gaps = 7/234 (2%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLM 63 ILYQD+ L+A+NKPSG LVH+SW+ +D K +Q VRD G+HVF HRLDRPTSGVLL Sbjct: 9 ILYQDDDLIAINKPSGLLVHKSWVAKDAKEFALQIVRDMSGKHVFPVHRLDRPTSGVLLF 68 Query: 64 GLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQ 123 G S E + + Q+E Q K Y A+VRGWL E+ ++D+ L D D Q Sbjct: 69 GFSGEIAQQVQAQWE--QANKTYWAVVRGWLKEQTLVDHALKGMADYGQDVEIV-----Q 121 Query: 124 PAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGD 183 A TH++ + VE+ RYP +R+ VE +PK GR HQ+RRHL HL HPIIGD+++G Sbjct: 122 EAQTHFKPIDYVEIDAEIDRYPKSRFSWVEAKPKQGRTHQIRRHLKHLSHPIIGDARYGK 181 Query: 184 LRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWR 237 + NR EH+ RL+LH QL +THP +G L I A L+ S F W+ Sbjct: 182 GKYNRYITEHYDCPRLLLHHQQLEMTHPVSGSKLMITAPLEGAMQSLFSTFDWK 235 >UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine synthase D n=1 Tax=Chlamydia muridarum Nigg RepID=UPI0001C37137 Length = 338 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 27/243 (11%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVR---------DQIGQHVFTAHR 52 L+ +Y+D ++ +NKP +VH + VV + HR Sbjct: 92 LDKVYEDNMILVINKPRNMVVHPAPGHVQGTVVHALLHEIGERLKQEFPEEPWRPGIVHR 151 Query: 53 LDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIA 112 LD+ TSG+L+ + A + ++ F Q++K Y AI ++ + + K Sbjct: 152 LDKDTSGLLITVKTRRAKAVYSELFSSKQMKKMYIAICINSPAQK-HIHTRIARHPVKRK 210 Query: 113 DKFA--REDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH 170 + ++ +G + A+TH LA R +V L P+TGR HQLR H+ H Sbjct: 211 EMTVLSKDTEGGKEAITHCHVLA-----------SNGRLSVVALYPETGRTHQLRVHMKH 259 Query: 171 LRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQA 230 L PI+GD +G N +GL + LHA L THP + E + + L D Sbjct: 260 LGTPILGDPVYGVPSINF----RYGLDKQQLHAYSLVFTHPESAERVELVTKLPDDMTSL 315 Query: 231 LSQ 233 + + Sbjct: 316 IEK 318 >UniRef50_B1YJB1 Pseudouridine synthase n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJB1_EXIS2 Length = 293 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 22/229 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKV---VVMQTVRDQIGQHVFTAHRLDRPTS 58 L+IL++D+WL+ VNKP G S L + + V+ + QI + +RLDR TS Sbjct: 81 LDILFEDDWLLIVNKPPGMASIPSRLHPERSLSNFVLGYYRQHQIPYAIHIVNRLDRDTS 140 Query: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118 G+++ S A L++ + + +RY A++ G + + +D P+ + ++ RE Sbjct: 141 GLVVFAKHSLAHHQLSKMQQNGLLDRRYVALIEGTIPAQ-TIDLPIGQTDHSFMERMVRE 199 Query: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 D Q A+TH + + + ++ +TGR HQ+R HLA L HP++GD Sbjct: 200 D--GQQAITHI-------LTSEPITAFSRELSRLTIKLETGRTHQIRVHLAALGHPLVGD 250 Query: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 + + + R LH++ + HP TGE +T A L D Sbjct: 251 TMY---------KGTPLIARQALHSASATFPHPGTGEVMTFVAPLPDDL 290 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 41/246 (16%) Query: 4 ILYQDEWLVAVNKPSGWLVHRSWLDRDE----------KVVVMQTVRDQIG-----QHVF 48 I+++D+ + +NKPSG LVH +E +V + Sbjct: 77 IIFEDKNMFVINKPSGMLVHPQSPVWEENPAAAFIGEETLVSLILANPPKNFEKGITRAG 136 Query: 49 TAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEE-AVLDYPLVEE 107 HRLD+ TSGV+++ +S+ + + F ++ K Y AIV G + ++ +++ P+ Sbjct: 137 LVHRLDKDTSGVMIIAKNSKTQDAMVEMFANREMHKTYEAIVCGVVPDDKGIINVPIGRV 196 Query: 108 LDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRH 167 + + AVT Y L E L++L P TGR +QLR H Sbjct: 197 TGGKIK----ASELGREAVTEYSVLQRKET-----------VSLMKLHPVTGRTNQLRVH 241 Query: 168 LAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTW 227 ++ L +P++GD + + RLMLH+ HPFT +P+ + Sbjct: 242 MSWLGYPVLGDWLY----------KGATAPRLMLHSKSAEFEHPFTSKPVKFTVAPPKDF 291 Query: 228 MQALSQ 233 + Sbjct: 292 KDSWKN 297 >UniRef50_B5JL25 Pseudouridine synthase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JL25_9BACT Length = 249 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 121/231 (52%), Positives = 152/231 (65%), Gaps = 3/231 (1%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEILY+DE LVA++KPSG LVHRS +DR E +Q +RDQIGQHV+ AHR+DRPTSG+L Sbjct: 14 LEILYRDERLVAIHKPSGLLVHRSPIDRRETRFAIQLLRDQIGQHVYPAHRIDRPTSGIL 73 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 L GL AG L+ F+ +IQK Y A+ RG L E ++D PL + D + E Sbjct: 74 LFGLDEAAGTALSLLFQNREIQKNYLAVTRGHLPESGLIDSPLHKYEDADGHIKSSET-- 131 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 Q A T YR LAT E+P T RY TTRY LVEL P TGR+HQ+RRHLAH+RHPIIGD +H Sbjct: 132 -QEAETAYRRLATTELPYPTERYDTTRYSLVELTPHTGRRHQIRRHLAHIRHPIIGDVRH 190 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALS 232 G + N+ HF + RL+L A+ + HPFT PL IH + ++ AL Sbjct: 191 GCNKANKLARSHFAIHRLLLAATHVVFVHPFTNAPLKIHCPPETSFQTALQ 241 >UniRef50_B7BE87 Pseudouridine synthase n=8 Tax=Bacteroidales RepID=B7BE87_9PORP Length = 551 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 101/223 (45%), Gaps = 21/223 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 LEI+Y+DE L+ VNKP+G L D D ++ + HRLD TSG++ Sbjct: 337 LEIVYEDESLLVVNKPAGMLSVPGKSDVDSVYQRVRRMYPG-ATGPMVVHRLDMATSGLM 395 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLME-EAVLDYPLVEELDKIADKFAREDK 120 L+ + E + L QF+ + KRY A + G + E E L+ PL + + + Sbjct: 396 LVAKTKEVHQNLQAQFKNRTVCKRYVAWLDGIVEEKEGHLELPLRPDPEDRPRQVVDVVH 455 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAH---LRHPIIG 177 +PAVT YR L P +V PKTGR HQLR H AH L PI+G Sbjct: 456 -GKPAVTDYRVLRYGGCKGGLRTTP----TVVSFVPKTGRTHQLRVHSAHPLGLNAPIVG 510 Query: 178 DSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIH 220 D +G RL LHA L THP +G + + Sbjct: 511 DELYGKK-----------ADRLYLHAEYLGFTHPVSGVYMEVE 542 >UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G4_9PROT Length = 315 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 + +LY+D+ L+ VNKP+G +VH + ++ R + AHRLDR TSGVL Sbjct: 94 IPVLYEDDSLLVVNKPAGMVVHGGSGHEAGLIEALKQSRGLDD--LRLAHRLDRDTSGVL 151 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWL-MEEAVLDYPLVEELDKIADKFAREDK 120 LM +A R L + F + +QK Y A++ G + L + + + ++ + + Sbjct: 152 LMAKHLDALRRLTESFRERDMQKTYFALIAGHPYAHAGRMSSNLAKGVVRGGERMVVDSE 211 Query: 121 GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK 180 + +VT Y+ + E Y +V L P +GR HQLR L H HPI+GD K Sbjct: 212 EGKASVTDYQVMIEYE-------RHGFPYAMVALNPHSGRTHQLRVQLQHEGHPILGDGK 264 Query: 181 HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQAL 231 +G + + + G + LMLHA +L THP +G+ L A D W L Sbjct: 265 YG-EKAQLAAYKSLGGKGLMLHAWRLRFTHPVSGKSLECKAPWPDNWSALL 314 >UniRef50_C9M5C8 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5C8_9BACT Length = 276 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 23/242 (9%) Query: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 L++LY+ + ++ +NKP+G L D HRLDR TSGV+ Sbjct: 49 LDVLYRSDSVLVINKPAGLLSQPDTKGEDSVATRALGYASDPAFGAQLVHRLDRNTSGVM 108 Query: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKG 121 ++ L +A R L F++ K Y A+V G L +D PL+++ D K R Sbjct: 109 ILALDGQALRSLMVCFKERTANKTYLALVSGQLPPSGQIDAPLLKDPD---KKLVRVASN 165 Query: 122 PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKH 181 + AVT +R LAT ++ L E+E TGR HQ+R H+ H+ HPI+GD+K+ Sbjct: 166 GERAVTRFRRLAT-----------DGQFSLAEVEILTGRTHQIRVHMNHIGHPILGDAKY 214 Query: 182 GDLRQNRSGAEHFGLQRLMLHASQLSLTHP------FTGEPLTIHAGLDDTWMQALSQFG 235 GD G++R MLHA+ L + P +G A L + G Sbjct: 215 GDFSAKPQVR-RLGIRRPMLHATCLVVNSPDDCLKEISGRR--FDAPLAADMASVCQKLG 271 Query: 236 WR 237 + Sbjct: 272 FE 273 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.195 0.752 Lambda K H 0.267 0.0598 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,195,259,507 Number of Sequences: 3077464 Number of extensions: 125644354 Number of successful extensions: 270056 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2976 Number of HSP's successfully gapped in prelim test: 1038 Number of HSP's that attempted gapping in prelim test: 255707 Number of HSP's gapped (non-prelim): 4646 length of query: 260 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 134 effective length of database: 652,635,892 effective search space: 87453209528 effective search space used: 87453209528 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 93 (39.9 bits)