Phyre 2 alignment of P64548 with c2l2qA_

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Job Description | P64548
Confidence | 11.05% | Date | Thu Jan 5 12:09:21 GMT 2012
Rank | 13 | Aligned Residues | 79
% Identity | 11% | Template | c2l2qA_
PDB info | PDB header:transferase | Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); | PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 52 | . | . | . | . | . | . |  |  | . | 60 | . | . | . | . | . | . | . | . |  | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |  | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . |  |  | . | . | . | . | . | . | 120 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | K | L | C | I | F | S | . | . | S | S | R | F | S | T | A | L | Q | E | . | N | A | A | T | S | L | P | Y | L | P | V | I | I | H | T | Q | Q | E | . | A | M | I | S | G | C | N | G | F | Y | F | G | N | E | S | P | T | F | Q | M | E | L | T | E | Q | Y | P | . | . | S | K | A | L | L | L | I | A | E | Q | N | T
Query Conservation |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  | . |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |
Template Sequence |  | L | L | V | C | G | A | G | M | S | T | S | M | L | V | Q | R | I | E | K | Y | A | K | S | K | N | I | N | A | T | I | E | A | I | A | E | T | R | L | S | E | V | V | D | R | F | D | V | V | L | L | A | P | Q | S | R | F | N | K | K | R | L | E | E | I | T | K | P | K | G | I | P | I | E | I | I | . | N | T | I | D
Template Known Secondary structure |  |  |  |  | S | S | S | S |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  | S |  |  |  |  |  |  |  | S | T | T |  |  |  |  | T | T | T |  | S |  |  |  |  |  | S |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  | . |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |  | . | . | . | .
|  | 126 | . | . | . | 130 | .
Predicted Secondary structure |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |
Query Sequence |  | E | C | I | I | G | S
Query Conservation |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |
Template Sequence |  | Y | G | T | M | N | G
Template Known Secondary structure |  |  |  |  | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |
|  | 87 | . | . | 90 | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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