Phyre 2 alignment of P64548 with c2hwkA_

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Job Description | P64548
Confidence | 18.30% | Date | Thu Jan 5 12:09:21 GMT 2012
Rank | 8 | Aligned Residues | 42
% Identity | 14% | Template | c2hwkA_
PDB info | PDB header:hydrolase | Chain: A: PDB Molecule:helicase nsp2; | PDBTitle: crystal structure of venezuelan equine encephalitis2 alphavirus nsp2 protease domain
Resolution | 2.45 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 106 | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | M | E | L | T | E | Q | Y | P | S | K | A | L | L | L | I | A | E | Q | N | T | E | C | I | I | G | S | A | F | C | L | I | I | H | N | N | D | V | R | F | A | V | N | L | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | S | F | V | S | K | L | K | G | R | T | V | L | V | V | G | E | . | . | K | L | S | V | P | G | K | M | V | D | W | L | S | D | R | P | E | A | T | F | R | A | R | L | D
Template Known Secondary structure |  |  |  |  |  |  | T | S | S |  | S |  |  |  |  |  |  | S | . | . |  |  |  |  | T | T | S |  |  |  |  |  |  | S | S | T | T |  | S |  |  |  |  | G | G
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 623 | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . |  |  | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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