BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (46 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7MFN6 50S ribosomal protein L36 2 n=3 Tax=Enterobacter...    85   6e-16
UniRef50_A6V1J0 50S ribosomal protein L36 2 n=397 Tax=cellular o...    72   7e-12
UniRef50_B2S7H9 50S ribosomal protein L36 n=44 Tax=Bacteria RepI...    58   1e-07
UniRef50_Q2GKJ8 50S ribosomal protein L36 n=12 Tax=Bacteria RepI...    57   2e-07
UniRef50_Q1QP05 50S ribosomal protein L36 n=77 Tax=cellular orga...    50   2e-05
UniRef50_B9SET5 Ribosomal protein L36 n=1 Tax=Ricinus communis R...    42   0.008
UniRef50_Q5GS04 50S ribosomal protein L36 n=5 Tax=Bacteria RepID...    40   0.020
UniRef50_C1QG84 50S ribosomal protein L36 n=2 Tax=cellular organ...    40   0.025
UniRef50_O94690 54S ribosomal protein c83.06c, mitochondrial n=4...    40   0.031
UniRef50_C9SF27 Ribosomal protein L36 n=1 Tax=Verticillium albo-...    39   0.066

>UniRef50_A7MFN6 50S ribosomal protein L36 2 n=3 Tax=Enterobacteriaceae
          RepID=RL362_ENTS8
          Length = 46

 Score = 85.1 bits (209), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKKKR 46
          M+VLNSLR+AK RHPDCQIV+RKGRLYVICK+NPRFKAVQGRKK++
Sbjct: 1  MQVLNSLRSAKARHPDCQIVRRKGRLYVICKTNPRFKAVQGRKKRK 46


>UniRef50_A6V1J0 50S ribosomal protein L36 2 n=397 Tax=cellular organisms
          RepID=RL362_PSEA7
          Length = 50

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 38/44 (86%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKK 44
          MKVL SL+ AK RH DCQ+VKR+GRLYVICKSNPRFK VQGR K
Sbjct: 1  MKVLASLKQAKLRHRDCQVVKRRGRLYVICKSNPRFKCVQGRPK 44


>UniRef50_B2S7H9 50S ribosomal protein L36 n=44 Tax=Bacteria RepID=RL36_BRUA1
          Length = 41

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG 41
          MK+ NSL+  K RH DCQ+V+RKGR+Y+I K+ PRFKA QG
Sbjct: 1  MKIKNSLKALKARHRDCQLVRRKGRVYIINKTAPRFKARQG 41


>UniRef50_Q2GKJ8 50S ribosomal protein L36 n=12 Tax=Bacteria RepID=RL36_ANAPZ
          Length = 42

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG 41
          MKV+ SL++AK R  DC+IV+RKGR+YVI K  PRFKA QG
Sbjct: 1  MKVMGSLKSAKSRDRDCKIVRRKGRVYVINKKKPRFKARQG 41


>UniRef50_Q1QP05 50S ribosomal protein L36 n=77 Tax=cellular organisms
          RepID=RL36_NITHX
          Length = 41

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 32/41 (78%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG 41
          MKV NSL++ + RH D ++V+RKGR+YVI K+  RFKA QG
Sbjct: 1  MKVRNSLKSLRARHRDNRLVRRKGRVYVINKTQRRFKARQG 41


>UniRef50_B9SET5 Ribosomal protein L36 n=1 Tax=Ricinus communis RepID=B9SET5_RICCO
          Length = 84

 Score = 41.6 bits (96), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 3/41 (7%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG 41
          MKV +S++   E    CQIVKR+GR+YVIC SNP+ K  QG
Sbjct: 4  MKVRSSVKKMCE---FCQIVKRRGRVYVICNSNPKHKQRQG 41


>UniRef50_Q5GS04 50S ribosomal protein L36 n=5 Tax=Bacteria RepID=RL36_WOLTR
          Length = 42

 Score = 40.0 bits (92), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG 41
          MKV  SL++ + R  +C++VKR GR+Y+I +  PR K  QG
Sbjct: 1  MKVKGSLKSHRNRDKNCKVVKRGGRIYIINEIKPRCKTRQG 41


>UniRef50_C1QG84 50S ribosomal protein L36 n=2 Tax=cellular organisms
          RepID=C1QG84_9SPIR
          Length = 38

 Score = 40.0 bits (92), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 3/40 (7%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQ 40
          MKV +S+   K+R  DCQIVKRKG + VICK NPR K  Q
Sbjct: 1  MKVKSSI---KKRCNDCQIVKRKGVVRVICKKNPRHKQKQ 37


>UniRef50_O94690 54S ribosomal protein c83.06c, mitochondrial n=4 Tax=Ascomycota
          RepID=RM36_SCHPO
          Length = 59

 Score = 39.7 bits (91), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 9  TAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG 41
          + K+R   C  V+RKGRLYV+CK +PR K  QG
Sbjct: 27 SVKKRCSSCYFVRRKGRLYVLCKKHPRHKTRQG 59


>UniRef50_C9SF27 Ribosomal protein L36 n=1 Tax=Verticillium albo-atrum VaMs.102
           RepID=C9SF27_VERA1
          Length = 110

 Score = 38.5 bits (88), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 9/47 (19%)

Query: 1   MKVLNSLRTAKERHPDCQIVKRK------GRLYVICKSNPRFKAVQG 41
           MKV +S+   K+R   C+IV+RK      G LYVICKSNPR K  QG
Sbjct: 67  MKVHSSV---KKRCEHCKIVRRKAGKRHNGYLYVICKSNPRHKQRQG 110


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_A7MFN6 50S ribosomal protein L36 2 n=3 Tax=Enterobacter...    49   5e-05
UniRef50_A6V1J0 50S ribosomal protein L36 2 n=397 Tax=cellular o...    46   3e-04

Sequences not found previously or not previously below threshold:

UniRef50_B2S7H9 50S ribosomal protein L36 n=44 Tax=Bacteria RepI...    43   0.003
UniRef50_Q2GKJ8 50S ribosomal protein L36 n=12 Tax=Bacteria RepI...    42   0.008
UniRef50_Q1QP05 50S ribosomal protein L36 n=77 Tax=cellular orga...    41   0.014
UniRef50_B9W7Q5 Ribosomal protein L36 n=8 Tax=Saccharomycetales ...    40   0.033
UniRef50_B9SET5 Ribosomal protein L36 n=1 Tax=Ricinus communis R...    38   0.063


CONVERGED!
>UniRef50_A7MFN6 50S ribosomal protein L36 2 n=3 Tax=Enterobacteriaceae
          RepID=RL362_ENTS8
          Length = 46

 Score = 48.8 bits (115), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKKKR 46
          M+VLNSLR+AK RHPDCQIV+RKGRLYVICK+NPRFKAVQGRKK++
Sbjct: 1  MQVLNSLRSAKARHPDCQIVRRKGRLYVICKTNPRFKAVQGRKKRK 46


>UniRef50_A6V1J0 50S ribosomal protein L36 2 n=397 Tax=cellular organisms
          RepID=RL362_PSEA7
          Length = 50

 Score = 46.1 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 39/46 (84%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKKKR 46
          MKVL SL+ AK RH DCQ+VKR+GRLYVICKSNPRFK VQGR K +
Sbjct: 1  MKVLASLKQAKLRHRDCQVVKRRGRLYVICKSNPRFKCVQGRPKPK 46


>UniRef50_B2S7H9 50S ribosomal protein L36 n=44 Tax=Bacteria RepID=RL36_BRUA1
          Length = 41

 Score = 42.7 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG 41
          MK+ NSL+  K RH DCQ+V+RKGR+Y+I K+ PRFKA QG
Sbjct: 1  MKIKNSLKALKARHRDCQLVRRKGRVYIINKTAPRFKARQG 41


>UniRef50_Q2GKJ8 50S ribosomal protein L36 n=12 Tax=Bacteria RepID=RL36_ANAPZ
          Length = 42

 Score = 41.5 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG 41
          MKV+ SL++AK R  DC+IV+RKGR+YVI K  PRFKA QG
Sbjct: 1  MKVMGSLKSAKSRDRDCKIVRRKGRVYVINKKKPRFKARQG 41


>UniRef50_Q1QP05 50S ribosomal protein L36 n=77 Tax=cellular organisms
          RepID=RL36_NITHX
          Length = 41

 Score = 40.8 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/41 (58%), Positives = 32/41 (78%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG 41
          MKV NSL++ + RH D ++V+RKGR+YVI K+  RFKA QG
Sbjct: 1  MKVRNSLKSLRARHRDNRLVRRKGRVYVINKTQRRFKARQG 41


>UniRef50_B9W7Q5 Ribosomal protein L36 n=8 Tax=Saccharomycetales RepID=B9W7Q5_CANDC
          Length = 125

 Score = 39.6 bits (91), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 9   TAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG 41
           + K    DC +VKRKGR+YV CKSN + K  QG
Sbjct: 93  SVKCMCKDCYLVKRKGRVYVYCKSNGKHKQRQG 125


>UniRef50_B9SET5 Ribosomal protein L36 n=1 Tax=Ricinus communis RepID=B9SET5_RICCO
          Length = 84

 Score = 38.4 bits (88), Expect = 0.063,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 3/41 (7%)

Query: 1  MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG 41
          MKV +S++   E    CQIVKR+GR+YVIC SNP+ K  QG
Sbjct: 4  MKVRSSVKKMCEF---CQIVKRRGRVYVICNSNPKHKQRQG 41


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.314    0.140    0.386 

Lambda     K      H
   0.267   0.0412    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,043,833
Number of Sequences: 3077464
Number of extensions: 3532376
Number of successful extensions: 10731
Number of sequences better than 1.0e-01: 38
Number of HSP's better than  0.1 without gapping: 52
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10676
Number of HSP's gapped (non-prelim): 63
length of query: 46
length of database: 1,040,396,356
effective HSP length: 20
effective length of query: 26
effective length of database: 978,847,076
effective search space: 25450023976
effective search space used: 25450023976
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 87 (38.1 bits)