Phyre 2 alignment of P42640 with c1cp3B_

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Job Description | P42640
Confidence | 7.04% | Date | Thu Jan 5 12:02:01 GMT 2012
Rank | 77 | Aligned Residues | 28
% Identity | 21% | Template | c1cp3B_
PDB info | PDB header:hydrolase/hydrolase inhibitor | Chain: B: PDB Molecule:apopain; | PDBTitle: crystal structure of the complex of apopain with the tetrapeptide2 inhibitor ace-dvad-fmc
Resolution | 2.30 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 398 | . | 400 | . | . | . | . | . | . | . | . | . | 410 |  | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | H | Y | T | D | S | L | L | G | Q | V | F | E | L | . | L | K | D | R | R | A | S | V | M | Y | F | A | D | H | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | E | I | V | E | L | M | R | D | V | S | K | E | D | H | S | K | R | S | S | F | V | C | V | L | L | S | H | G
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | T | S |  | G | G | G | B | S |  |  |  |  |  |  |  | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 94 | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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