10/01/2012 07:00:33 : INFO  : Run start: Tue Jan 10 07:00:32 GMT 2012
10/01/2012 07:00:40 : INFO  : Initialised job
10/01/2012 07:00:44 : INFO  : Renaming log file 'phyre2_20120110_070031.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/a2a42925ec7eef37/phyre_20120110_070031.log'
10/01/2012 07:00:45 : INFO  : Initialised job:
Sequence
>batch____
MTVFNKFARTFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFFVLTILVVKRISSLPLR
LLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDPDEVVKMLGMYIPYLCAFA
FLSLLFLAVIIKYDVSLPTKKVTGILLLIVISGSLFSACQFAYKDAKNKKAFSPYILASR
FATYTPFFNLNYFALAAKEHQRLLSIANTVPYFQLSVRDTGIDTYVLIVGESVRVDNMSL
YGYTRSTTPQVEAQRKQIKLFNQAISGAPYTALSVPLSLTADSVLSHDIHNYPDNIINMA
NQAGFQTFWLSSQSAFRQNGTAVTSIAMRAMETVYVRGFDELLLPHLSQALQQNTQQKKL
IVLHLNGSHEPACSAYPQSSAVFQPQDDQDACYDNSIHYTDSLLGQVFELLKDRRASVMY
FADHGLERDPTKKNVYFHGGREASQQAYHVPMFIWYSPVLGDGVDRTTENNIFSTAYNNY
LINAWMGVTKPEQPQTLEEVIAHYKGDSRVVDANHDVFDYVMLRKEFTEDKQGNPTPEGQ
G

10/01/2012 07:00:47 : INFO  : Checked sequence
10/01/2012 07:00:51 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 07:00:52 : INFO  : PSI-BLAST 3 iterations
10/01/2012 07:03:05 : INFO  : PSI-BLAST 5 iterations
10/01/2012 07:06:42 : INFO  : Finished PSI-BLAST
10/01/2012 07:06:45 : INFO  : Running Buildali to generate a3m file
10/01/2012 07:20:25 : INFO  : Converting to HMM
10/01/2012 07:20:34 : INFO  : Calibrating HMM
10/01/2012 07:20:56 : INFO  : Searching HMM database
10/01/2012 07:29:56 : INFO  : Finished buildali
10/01/2012 07:29:58 : INFO  : Predicting secondary structure
10/01/2012 07:30:07 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 07:30:09 : INFO  : Predicting Disordered regions
10/01/2012 07:30:14 : INFO  : Predicted Disorder (Disopred)
10/01/2012 07:30:15 : INFO  : Running memsat_svm check
10/01/2012 07:39:20 : INFO  : Running memsat_svm full
10/01/2012 07:43:12 : INFO  : Predicted Transmembrane (memsat_svm) ID 'a2a42925ec7eef37'
10/01/2012 07:43:16 : INFO  : Initialising fold library search
10/01/2012 07:43:19 : INFO  : Initialised search input
10/01/2012 07:43:21 : INFO  : Building Ensemble models
10/01/2012 07:43:24 : INFO  : Building hh.c2w8dB_.model.1.pdb
10/01/2012 07:43:40 : INFO  : Building hh.c3ed4A_.model.2.pdb
10/01/2012 07:43:52 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a2a42925ec7eef37/hh.c3ed4A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a2a42925ec7eef37/c3ed4A_.2.pdb
10/01/2012 07:43:56 : INFO  : Building hh.d1fsua_.model.3.pdb
10/01/2012 07:44:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a2a42925ec7eef37/hh.d1fsua_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a2a42925ec7eef37/d1fsua_.3.pdb
10/01/2012 07:44:12 : INFO  : Building hh.c2qzuA_.model.4.pdb
10/01/2012 07:44:23 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a2a42925ec7eef37/hh.c2qzuA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a2a42925ec7eef37/c2qzuA_.4.pdb
10/01/2012 07:44:26 : INFO  : Building hh.c2w5tA_.model.5.pdb
10/01/2012 07:44:38 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a2a42925ec7eef37/hh.c2w5tA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a2a42925ec7eef37/c2w5tA_.5.pdb
10/01/2012 07:44:46 : INFO  : Building hh.c3b5qB_.model.6.pdb
10/01/2012 07:44:59 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a2a42925ec7eef37/hh.c3b5qB_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a2a42925ec7eef37/c3b5qB_.6.pdb
10/01/2012 07:45:03 : INFO  : Building c2w8dB_.1.pdb
10/01/2012 07:45:18 : INFO  : Building c3ed4A_.2.pdb
10/01/2012 07:45:32 : INFO  : Building d1fsua_.3.pdb
10/01/2012 07:45:45 : INFO  : Building c2qzuA_.4.pdb
10/01/2012 07:46:00 : INFO  : Building c2w5tA_.5.pdb
10/01/2012 07:46:17 : INFO  : Building c3b5qB_.6.pdb
10/01/2012 07:46:32 : INFO  : Building c3lxqB_.7.pdb
10/01/2012 07:46:49 : INFO  : Building d1auka_.8.pdb
10/01/2012 07:47:05 : INFO  : Building d1hdha_.9.pdb
10/01/2012 07:47:20 : INFO  : Building d1p49a_.10.pdb
10/01/2012 07:47:35 : INFO  : Building c2vqrA_.11.pdb
10/01/2012 07:47:50 : INFO  : Building d1o98a2.12.pdb
10/01/2012 07:48:09 : INFO  : Building c2zktB_.13.pdb
10/01/2012 07:48:24 : INFO  : Building c3m8yC_.14.pdb
10/01/2012 07:48:39 : INFO  : Building d2i09a1.15.pdb
10/01/2012 07:48:54 : INFO  : Building c2gsoB_.16.pdb
10/01/2012 07:49:08 : INFO  : Building c3q3qA_.17.pdb
10/01/2012 07:49:21 : INFO  : Building c2i09A_.18.pdb
10/01/2012 07:49:34 : INFO  : Building c3szzA_.19.pdb
10/01/2012 07:49:49 : INFO  : Building d1ei6a_.20.pdb
10/01/2012 07:51:42 : INFO  : Finished HH model building
10/01/2012 07:51:43 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 07:53:17 : INFO  : html domain output complete ID 'a2a42925ec7eef37'
10/01/2012 10:04:04 : INFO  : Run end  : Tue Jan 10 10:04:03 GMT 2012
