18/01/2012 06:10:09 : INFO  : Run start: Wed Jan 18 06:10:08 GMT 2012
18/01/2012 06:10:14 : INFO  : Initialised job
18/01/2012 06:10:16 : INFO  : Renaming log file 'phyre2_20120118_061007.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/a25ccd49960a2896/phyre_20120118_061007.log'
18/01/2012 06:10:17 : INFO  : Initialised job:
Sequence
>batch____
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQ
AKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDN
VEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFM
LDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEV
PLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPED
SMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCS
NVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLR
PYMNGLEYIG

18/01/2012 06:10:19 : INFO  : Checked sequence
18/01/2012 06:10:22 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 06:10:23 : INFO  : PSI-BLAST 3 iterations
18/01/2012 06:12:35 : INFO  : PSI-BLAST 5 iterations
18/01/2012 06:15:05 : INFO  : Finished PSI-BLAST
18/01/2012 06:15:08 : INFO  : Running Buildali to generate a3m file
18/01/2012 06:24:41 : INFO  : Converting to HMM
18/01/2012 06:24:45 : INFO  : Calibrating HMM
18/01/2012 06:25:04 : INFO  : Searching HMM database
18/01/2012 06:32:32 : INFO  : Finished buildali
18/01/2012 06:32:34 : INFO  : Predicting secondary structure
18/01/2012 06:32:42 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 06:32:44 : INFO  : Predicting Disordered regions
18/01/2012 06:32:49 : INFO  : Predicted Disorder (Disopred)
18/01/2012 06:32:50 : INFO  : Running memsat_svm check
18/01/2012 06:37:04 : INFO  : Running memsat_svm full
18/01/2012 06:39:45 : INFO  : Predicted Transmembrane (memsat_svm) ID 'a25ccd49960a2896'
18/01/2012 06:39:48 : INFO  : Initialising fold library search
18/01/2012 06:39:51 : INFO  : Initialised search input
18/01/2012 06:39:54 : INFO  : Building Ensemble models
18/01/2012 06:39:58 : INFO  : Building hh.c2dq3A_.model.1.pdb
18/01/2012 06:40:19 : INFO  : Building c3lssA_.1.pdb
18/01/2012 06:40:37 : INFO  : Building c2dq0A_.2.pdb
18/01/2012 06:40:53 : INFO  : Building c1wleB_.3.pdb
18/01/2012 06:41:09 : INFO  : Building c2dq3A_.4.pdb
18/01/2012 06:41:25 : INFO  : Building c1sryB_.5.pdb
18/01/2012 06:41:41 : INFO  : Building c3qo8A_.6.pdb
18/01/2012 06:41:55 : INFO  : Building c3errB_.7.pdb
18/01/2012 06:42:10 : INFO  : Building d1seta2.8.pdb
18/01/2012 06:42:24 : INFO  : Building c2cj9A_.9.pdb
18/01/2012 06:42:38 : INFO  : Building d1qf6a4.10.pdb
18/01/2012 06:42:52 : INFO  : Building d1nyra4.11.pdb
18/01/2012 06:43:06 : INFO  : Building d1nj8a3.12.pdb
18/01/2012 06:43:20 : INFO  : Building d1nj1a3.13.pdb
18/01/2012 06:43:34 : INFO  : Building c3mf2B_.14.pdb
18/01/2012 06:43:49 : INFO  : Building d1hc7a2.15.pdb
18/01/2012 06:44:04 : INFO  : Building c1nyqA_.16.pdb
18/01/2012 06:44:18 : INFO  : Building c3ialB_.17.pdb
18/01/2012 06:44:30 : INFO  : Building c1qf6A_.18.pdb
18/01/2012 06:44:43 : INFO  : Building d1b76a2.19.pdb
18/01/2012 06:44:56 : INFO  : Building d1atia2.20.pdb
18/01/2012 06:45:29 : INFO  : Finished HH model building
18/01/2012 06:45:31 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 06:46:21 : INFO  : html domain output complete ID 'a25ccd49960a2896'
18/01/2012 08:52:38 : INFO  : Run end  : Wed Jan 18 08:52:36 GMT 2012
