Phyre 2 alignment of P0A8L1 with c3h9dB_

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Job Description | P0A8L1
Confidence | 28.83% | Date | Thu Jan 5 11:08:05 GMT 2012
Rank | 125 | Aligned Residues | 52
% Identity | 15% | Template | c3h9dB_
PDB info | PDB header:structural protein | Chain: B: PDB Molecule:microtubule-associated protein 1a/1b, light chain 3, | PDBTitle: crystal structure of trypanosoma brucei atg8
Resolution | 2.30 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 358 | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | C | S | N | V | W | D | F | Q | A | R | R | M | Q | A | R | C | R | S | K | S | D | K | K | T | R | L | V | H | T | L | N | G | S | G | L | A | V | G | R | T | L | V | A | V | M | E | N | Y | Q | Q | A | D | G | R | I | E | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | V | G | Q | F | V | S | V | L | R | K | R | V | Q | L | . | . | . | . | . | E | A | E | S | A | L | F | V | Y | . | T | N | D | T | V | L | P | S | S | A | Q | M | A | D | I | Y | S | K | Y | K | D | E | D | G | F | L | Y | M
Template Known Secondary structure |  | B |  |  |  |  |  |  |  |  |  |  |  |  | T |  | . | . | . | . | . |  | T | T | S |  |  |  |  |  | . |  | T | T |  |  |  |  | T | T | S | B |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 58 | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . |  |  |  |  |  | . | . | . | . | . | . | . | 80 | . |  | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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