Phyre 2 alignment of P0A8L1 with c2zpnB_

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Job Description | P0A8L1
Confidence | 31.16% | Date | Thu Jan 5 11:08:05 GMT 2012
Rank | 122 | Aligned Residues | 52
% Identity | 12% | Template | c2zpnB_
PDB info | PDB header:protein transport | Chain: B: PDB Molecule:autophagy-related protein 8; | PDBTitle: the crystal structure of saccharomyces cerevisiae atg8-2 atg19(412-415) complex
Resolution | 2.70 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 358 | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | C | S | N | V | W | D | F | Q | A | R | R | M | Q | A | R | C | R | S | K | S | D | K | K | T | R | L | V | H | T | L | N | G | S | G | L | A | V | G | R | T | L | V | A | V | M | E | N | Y | Q | Q | A | D | G | R | I | E | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | V | G | Q | F | V | Y | V | I | R | K | R | I | M | L | . | . | . | . | . | . | P | P | E | K | A | I | F | I | F | V | N | D | T | L | P | P | T | A | A | L | M | S | A | I | Y | Q | E | H | K | D | K | D | G | F | L | Y | V
Template Known Secondary structure |  | B |  |  |  |  |  |  |  |  |  |  |  | T | T |  | . | . | . | . | . | . |  | T | T | S |  |  |  |  |  |  | T | T | B |  |  |  | T | T |  | B |  |  |  |  |  |  |  |  |  |  | T | T | S | S |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 56 | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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