Phyre 2 alignment of P76342 with d1ny721

Return to main results | Retrieve Phyre Job Id

Job Description | P76342
Confidence | 5.25% | Date | Thu Jan 5 12:22:01 GMT 2012
Rank | 38 | Aligned Residues | 27
% Identity | 26% | Template | d1ny721
SCOP info | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Comoviridae-like VP
Resolution | 3.00

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 126 | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . |  |  |  |  |  |  |  |  | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |
Query Sequence |  | L | D | H | D | D | L | T | R | R | F | P | L | E | E | R | I | Y | R | M | R | C | V | E | A | W | S | . | . | . | . | . | . | . | . | M | V | V | P | W
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | W | S | A | E | M | I | . | S | R | S | R | V | R | . | . | . | M | T | V | I | C | V | S | G | W | T | L | S | P | T | T | D | V | I | A | K | L | D | W
Template Known Secondary structure |  | B |  |  |  |  |  | . |  |  | T | T |  |  | . | . | . |  |  |  |  |  |  |  |  |  | S | S |  |  | S | S |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 136 | . | . | . | 140 | . |  | . | . | . | . | . | . |  |  |  | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions