17/01/2012 11:53:27 : INFO  : Run start: Tue Jan 17 11:53:27 GMT 2012
17/01/2012 11:53:27 : INFO  : Initialised job
17/01/2012 11:53:27 : INFO  : Renaming log file 'phyre2_20120117_115327.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/a21e475de29d8825/phyre_20120117_115327.log'
17/01/2012 11:53:28 : INFO  : Initialised job:
Sequence
>batch____
MKKNQFLKESDVTAESVFFMKRRQVLKALGISATALSLPHAAHADLLSWFKGNDRPPAPA
GKALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEV
AKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFE
TIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLI
VPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGS
GGILDVQRQPTLLFNGYAAQVASLYRGLDLRENF

17/01/2012 11:53:28 : INFO  : Checked sequence
17/01/2012 11:53:28 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 11:53:28 : INFO  : PSI-BLAST 3 iterations
17/01/2012 11:55:15 : INFO  : PSI-BLAST 5 iterations
17/01/2012 11:56:58 : INFO  : Finished PSI-BLAST
17/01/2012 11:56:58 : INFO  : Running Buildali to generate a3m file
17/01/2012 12:02:08 : INFO  : Converting to HMM
17/01/2012 12:02:10 : INFO  : Calibrating HMM
17/01/2012 12:02:18 : INFO  : Searching HMM database
17/01/2012 12:09:07 : INFO  : Finished buildali
17/01/2012 12:09:07 : INFO  : Predicting secondary structure
17/01/2012 12:09:08 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 12:09:08 : INFO  : Predicting Disordered regions
17/01/2012 12:09:08 : INFO  : Predicted Disorder (Disopred)
17/01/2012 12:09:08 : INFO  : Running memsat_svm check
17/01/2012 12:09:58 : INFO  : Globular protein
17/01/2012 12:09:58 : INFO  : Predicted Transmembrane (memsat_svm) ID 'a21e475de29d8825'
17/01/2012 12:09:58 : INFO  : Initialising fold library search
17/01/2012 12:09:58 : INFO  : Initialised search input
17/01/2012 12:09:59 : INFO  : Building Ensemble models
17/01/2012 12:09:59 : INFO  : Building hh.d1xdya_.model.1.pdb
17/01/2012 12:09:59 : INFO  : Building hh.c1xdyC_.model.2.pdb
17/01/2012 12:10:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a21e475de29d8825/hh.c1xdyC_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a21e475de29d8825/c1xdyC_.2.pdb
17/01/2012 12:10:00 : INFO  : Building hh.c2e76D_.model.3.pdb
17/01/2012 12:10:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a21e475de29d8825/hh.c2e76D_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a21e475de29d8825/c2e76D_.12.pdb
17/01/2012 12:10:00 : INFO  : Building hh.c1p84E_.model.4.pdb
17/01/2012 12:10:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a21e475de29d8825/hh.c1p84E_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a21e475de29d8825/c1p84E_.13.pdb
17/01/2012 12:10:01 : INFO  : Building d1xdya_.1.pdb
17/01/2012 12:10:02 : INFO  : Building c1xdyC_.2.pdb
17/01/2012 12:10:02 : INFO  : Building c2xtsC_.3.pdb
17/01/2012 12:10:03 : INFO  : Building c1soxB_.4.pdb
17/01/2012 12:10:03 : INFO  : Building c2bihA_.5.pdb
17/01/2012 12:10:04 : INFO  : Building c2bpbA_.6.pdb
17/01/2012 12:10:04 : INFO  : Building c2biiA_.7.pdb
17/01/2012 12:10:05 : INFO  : Building c2a9dB_.8.pdb
17/01/2012 12:10:06 : INFO  : Building c1ogpD_.9.pdb
17/01/2012 12:10:07 : INFO  : Building d1ogpa2.10.pdb
17/01/2012 12:10:09 : INFO  : Building d2a9da2.11.pdb
17/01/2012 12:10:10 : INFO  : Building c2e76D_.12.pdb
17/01/2012 12:10:11 : INFO  : Building c1p84E_.13.pdb
17/01/2012 12:10:11 : INFO  : Building c2fyuE_.14.pdb
17/01/2012 12:10:13 : INFO  : Building d1ogpa1.15.pdb
17/01/2012 12:10:14 : INFO  : Building c2fynO_.16.pdb
17/01/2012 12:10:15 : INFO  : Building d1r6oc1.17.pdb
17/01/2012 12:10:17 : INFO  : Building d2a9da1.18.pdb
17/01/2012 12:10:17 : INFO  : Building c3h3gB_.19.pdb
17/01/2012 12:10:18 : INFO  : Building d2axwa1.20.pdb
17/01/2012 12:10:26 : INFO  : Finished HH model building
17/01/2012 12:10:26 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 12:10:30 : INFO  : html domain output complete ID 'a21e475de29d8825'
17/01/2012 12:41:37 : INFO  : Run end  : Tue Jan 17 12:41:37 GMT 2012
