Phyre 2 Results for P76342

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Email | l.a.kelley@imperial.ac.uk
Description | P76342
Date | Thu Jan 5 12:22:01 GMT 2012
Unique Job ID | a21e475de29d8825

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1xdya_
Top template information
Fold:Oxidoreductase molybdopterin-binding domain Superfamily:Oxidoreductase molybdopterin-binding domain Family:Oxidoreductase molybdopterin-binding domain
Confidence and coverage
Confidence: | 100.0% | Coverage: | 79%
263 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | K | N | Q | F | L | K | E | S | D | V | T | A | E | S | V | F | F | M | K | R | R | Q | V | L | K | A | L | G | I | S | A | T | A | L | S | L | P | H | A | A | H | A | D | L | L | S | W | F | K | G | N | D | R | P | P | A | P | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | G | K | A | L | E | F | S | K | P | A | A | W | Q | N | N | L | P | L | T | P | A | D | K | V | S | G | Y | N | N | F | Y | E | F | G | L | D | K | A | D | P | A | A | N | A | G | S | L | K | T | D | P | W | T | L | K | I | S | G | E | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | A | K | P | L | T | L | D | H | D | D | L | T | R | R | F | P | L | E | E | R | I | Y | R | M | R | C | V | E | A | W | S | M | V | V | P | W | I | G | F | P | L | H | K | L | L | A | L | A | E | P | T | S | N | A | K | Y | V | A | F | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | I | Y | A | P | E | Q | M | P | G | Q | Q | D | R | F | I | G | G | G | L | K | Y | P | Y | V | E | G | L | R | L | D | E | A | M | H | P | L | T | L | M | T | V | G | V | Y | G | K | A | L | P | P | Q | N | G | A | P | V | R | L | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? |  |  |  | ? |  | ? |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | V | P | W | K | Y | G | F | K | G | I | K | S | I | V | S | I | K | L | T | R | E | R | P | P | T | T | W | N | L | A | A | P | D | E | Y | G | F | Y | A | N | V | N | P | Y | V | D | H | P | R | W | S | Q | A | T | E | R | F | I | G | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | .
Sequence |  | G | G | I | L | D | V | Q | R | Q | P | T | L | L | F | N | G | Y | A | A | Q | V | A | S | L | Y | R | G | L | D | L | R | E | N | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1xdya_ |

### PDB 1xdy chain A

Region: 62 - 330
Aligned: 263
Modelled: 269
Confidence: 100.0%
Identity: 100%
Fold: Oxidoreductase molybdopterin-binding domain
Superfamily: Oxidoreductase molybdopterin-binding domain
Family: Oxidoreductase molybdopterin-binding domain

Phyre2
2 |
| c1xdyC_ |

### PDB 1xdy chain C

Region: 62 - 330
Aligned: 264
Modelled: 269
Confidence: 100.0%
Identity: 100%
PDB header:oxidoreductase
Chain: C: PDB Molecule:bacterial sulfite oxidase;
PDBTitle: structural and biochemical identification of a novel2 bacterial oxidoreductase, w-containing cofactor

Phyre2
3 |
| c2xtsC_ |

### PDB 2xts chain C

Region: 63 - 334
Aligned: 244
Modelled: 251
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase/electron transport
Chain: C: PDB Molecule:sulfite dehydrogenase;
PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus

Phyre2
4 |
| c1soxB_ |

### PDB 1sox chain B

Region: 52 - 334
Aligned: 263
Modelled: 264
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite oxidase;
PDBTitle: sulfite oxidase from chicken liver

Phyre2
5 |
| c2bihA_ |

### PDB 2bih chain A

Region: 56 - 334
Aligned: 256
Modelled: 261
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrate reductase [nadph];
PDBTitle: crystal structure of the molybdenum-containing nitrate2 reducing fragment of pichia angusta assimilatory nitrate3 reductase

Phyre2
6 |
| c2bpbA_ |

### PDB 2bpb chain A

Region: 68 - 334
Aligned: 248
Modelled: 256
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit a;
PDBTitle: sulfite dehydrogenase from starkeya novella

Phyre2
7 |
| c2biiA_ |

### PDB 2bii chain A

Region: 83 - 334
Aligned: 229
Modelled: 238
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrate reductase [nadph];
PDBTitle: crystal structure of nitrate-reducing fragment of2 assimilatory nitrate reductase from pichia angusta

Phyre2
8 |
| c2a9dB_ |

### PDB 2a9d chain B

Region: 63 - 334
Aligned: 253
Modelled: 259
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite oxidase;
PDBTitle: crystal structure of recombinant chicken sulfite oxidase with arg at2 residue 161

Phyre2
9 |
| c1ogpD_ |

### PDB 1ogp chain D

Region: 53 - 334
Aligned: 264
Modelled: 271
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: D: PDB Molecule:sulfite oxidase;
PDBTitle: the crystal structure of plant sulfite oxidase provides2 insight into sulfite oxidation in plants and animals

Phyre2
10 |
| d1ogpa2 |

### PDB 1ogp chain A domain 2

Region: 44 - 283
Aligned: 222
Modelled: 234
Confidence: 100.0%
Identity: 21%
Fold: Oxidoreductase molybdopterin-binding domain
Superfamily: Oxidoreductase molybdopterin-binding domain
Family: Oxidoreductase molybdopterin-binding domain

Phyre2
11 |
| d2a9da2 |

### PDB 2a9d chain A domain 2

Region: 53 - 294
Aligned: 216
Modelled: 229
Confidence: 100.0%
Identity: 22%
Fold: Oxidoreductase molybdopterin-binding domain
Superfamily: Oxidoreductase molybdopterin-binding domain
Family: Oxidoreductase molybdopterin-binding domain

Phyre2
12 |
| c2e76D_ |

### PDB 2e76 chain D

Region: 17 - 70
Aligned: 54
Modelled: 54
Confidence: 77.3%
Identity: 17%
PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus

Phyre2
13 |
| c1p84E_ |

### PDB 1p84 chain E

Region: 2 - 42
Aligned: 41
Modelled: 41
Confidence: 53.8%
Identity: 22%
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex

Phyre2
14 |
| c2fyuE_ |

### PDB 2fyu chain E

Region: 20 - 41
Aligned: 22
Modelled: 22
Confidence: 34.5%
Identity: 14%
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor

Phyre2
15 |
| d1ogpa1 |

### PDB 1ogp chain A domain 1

Region: 279 - 334
Aligned: 48
Modelled: 48
Confidence: 28.0%
Identity: 15%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: E set domains
Family: Molybdenum-containing oxidoreductases-like dimerisation domain

Phyre2
16 |
| c2fynO_ |

### PDB 2fyn chain O

Region: 20 - 41
Aligned: 22
Modelled: 22
Confidence: 22.0%
Identity: 9%
PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex

Phyre2
17 |
| d1r6oc1 |

### PDB 1r6o chain C domain 1

Region: 231 - 241
Aligned: 11
Modelled: 11
Confidence: 21.2%
Identity: 18%
Fold: ClpS-like
Superfamily: ClpS-like
Family: Adaptor protein ClpS (YljA)

Phyre2
18 |
| d2a9da1 |

### PDB 2a9d chain A domain 1

Region: 279 - 334
Aligned: 48
Modelled: 52
Confidence: 13.5%
Identity: 21%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: E set domains
Family: Molybdenum-containing oxidoreductases-like dimerisation domain

Phyre2
19 |
| c3h3gB_ |

### PDB 3h3g chain B

Region: 15 - 31
Aligned: 17
Modelled: 17
Confidence: 12.9%
Identity: 29%
PDB header:membrane protein
Chain: B: PDB Molecule:parathyroid hormone-related protein;
PDBTitle: crystal structure of the extracellular domain of the human parathyroid2 hormone receptor (pth1r) in complex with parathyroid hormone-related3 protein (pthrp)

Phyre2
20 |
| d2axwa1 |

### PDB 2axw chain A domain 1

Region: 100 - 125
Aligned: 26
Modelled: 26
Confidence: 12.0%
Identity: 12%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1xdya_ |
|  | 100.0 | 100 | Fold:Oxidoreductase molybdopterin-binding domain Superfamily:Oxidoreductase molybdopterin-binding domain Family:Oxidoreductase molybdopterin-binding domain
2 | c1xdyC_ |
|  | 100.0 | 100 | PDB header:oxidoreductase Chain: C: PDB Molecule:bacterial sulfite oxidase; PDBTitle: structural and biochemical identification of a novel2 bacterial oxidoreductase, w-containing cofactor
3 | c2xtsC_ |
|  | 100.0 | 20 | PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:sulfite dehydrogenase; PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus
4 | c1soxB_ |
|  | 100.0 | 21 | PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite oxidase; PDBTitle: sulfite oxidase from chicken liver
5 | c2bihA_ |
|  | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:nitrate reductase [nadph]; PDBTitle: crystal structure of the molybdenum-containing nitrate2 reducing fragment of pichia angusta assimilatory nitrate3 reductase
6 | c2bpbA_ |
|  | 100.0 | 24 | PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit a; PDBTitle: sulfite dehydrogenase from starkeya novella
7 | c2biiA_ |
|  | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:nitrate reductase [nadph]; PDBTitle: crystal structure of nitrate-reducing fragment of2 assimilatory nitrate reductase from pichia angusta
8 | c2a9dB_ |
|  | 100.0 | 19 | PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite oxidase; PDBTitle: crystal structure of recombinant chicken sulfite oxidase with arg at2 residue 161
9 | c1ogpD_ |
|  | 100.0 | 20 | PDB header:oxidoreductase Chain: D: PDB Molecule:sulfite oxidase; PDBTitle: the crystal structure of plant sulfite oxidase provides2 insight into sulfite oxidation in plants and animals
10 | d1ogpa2 |
|  | 100.0 | 21 | Fold:Oxidoreductase molybdopterin-binding domain Superfamily:Oxidoreductase molybdopterin-binding domain Family:Oxidoreductase molybdopterin-binding domain
11 | d2a9da2 |
|  | 100.0 | 22 | Fold:Oxidoreductase molybdopterin-binding domain Superfamily:Oxidoreductase molybdopterin-binding domain Family:Oxidoreductase molybdopterin-binding domain
12 | c2e76D_ |
|  | 77.3 | 17 | PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
13 | c1p84E_ |
|  | 53.8 | 22 | PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
14 | c2fyuE_ |
|  | 34.5 | 14 | PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
15 | d1ogpa1 |
|  | 28.0 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Molybdenum-containing oxidoreductases-like dimerisation domain
16 | c2fynO_ |
|  | 22.0 | 9 | PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
17 | d1r6oc1 |
|  | 21.2 | 18 | Fold:ClpS-like Superfamily:ClpS-like Family:Adaptor protein ClpS (YljA)
18 | d2a9da1 |
|  | 13.5 | 21 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Molybdenum-containing oxidoreductases-like dimerisation domain
19 | c3h3gB_ |
|  | 12.9 | 29 | PDB header:membrane protein Chain: B: PDB Molecule:parathyroid hormone-related protein; PDBTitle: crystal structure of the extracellular domain of the human parathyroid2 hormone receptor (pth1r) in complex with parathyroid hormone-related3 protein (pthrp)
20 | d2axwa1 |
|  | 12.0 | 12 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
21 | d2evea1 |
| not modelled | 11.8 | 19 | Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like
22 | c3dnjB_ |
| not modelled | 11.5 | 9 | PDB header:peptide binding protein Chain: B: PDB Molecule:atp-dependent clp protease adapter protein clps; PDBTitle: the structure of the caulobacter crescentus clps protease2 adaptor protein in complex with a n-end rule peptide
23 | c3ffdP_ |
| not modelled | 10.7 | 31 | PDB header:immune system/hormone Chain: P: PDB Molecule:parathyroid hormone-related protein; PDBTitle: structure of parathyroid hormone-related protein complexed2 to a neutralizing monoclonal antibody
24 | d1l7la_ |
| not modelled | 9.9 | 38 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:PA-IL, galactose-binding lectin 1
25 | d1pd0a2 |
| not modelled | 9.4 | 16 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:beta-sandwich domain of Sec23/24 Family:beta-sandwich domain of Sec23/24
26 | c2inpE_ |
| not modelled | 7.9 | 14 | PDB header:oxidoreductase Chain: E: PDB Molecule:phenol hydroxylase component pho; PDBTitle: structure of the phenol hydroxylase-regulatory protein2 complex
27 | d2g2xa1 |
| not modelled | 7.8 | 27 | Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like
28 | c1r8oA_ |
| not modelled | 7.1 | 22 | PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kunitz trypsin inhibitor; PDBTitle: crystal structure of an unusual kunitz-type trypsin inhibitor from2 copaifera langsdorffii seeds
29 | c3diiB_ |
| not modelled | 6.8 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain dehydrogenase/reductase sdr; PDBTitle: crystal structure of a carbohydrate specific scor enzyme2 from clostridium thermocellum, ligand-free form
30 | d1zud21 |
| not modelled | 6.3 | 9 | Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS
31 | d2huha1 |
| not modelled | 6.2 | 18 | Fold:C2 domain-like Superfamily:Smr-associated domain-like Family:Smr-associated domain
32 | c2fvnA_ |
| not modelled | 6.0 | 12 | PDB header:cell adhesion Chain: A: PDB Molecule:protein afad; PDBTitle: the fibrillar tip complex of the afa/dr adhesins from2 pathogen e. coli displays synergistic binding to 5 1 and v3 3 integrins
33 | d1qo7a_ |
| not modelled | 5.7 | 30 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Epoxide hydrolase
34 | d2ar1a1 |
| not modelled | 5.5 | 18 | Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like
35 | d1pgw21 |
| not modelled | 5.5 | 22 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP
36 | d2hkja1 |
| not modelled | 5.3 | 22 | Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Topoisomerase VI-B subunit middle domain
37 | d1pgl21 |
| not modelled | 5.3 | 22 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP
38 | d1ny721 |
| not modelled | 5.2 | 26 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0