10/01/2012 23:45:16 : INFO  : Run start: Tue Jan 10 23:45:15 GMT 2012
10/01/2012 23:45:23 : INFO  : Initialised job
10/01/2012 23:45:25 : INFO  : Renaming log file 'phyre2_20120110_234514.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/a1e5789b51529c79/phyre_20120110_234514.log'
10/01/2012 23:45:27 : INFO  : Initialised job:
Sequence
>batch____
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVK
GDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLL
ARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASV
GAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLL
WMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFV
SQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGE
ALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEM
LQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAAR
QVTNQIVRGMLGSLLGGRRR

10/01/2012 23:45:28 : INFO  : Checked sequence
10/01/2012 23:45:31 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 23:45:33 : INFO  : PSI-BLAST 3 iterations
10/01/2012 23:47:33 : INFO  : PSI-BLAST 5 iterations
10/01/2012 23:50:26 : INFO  : Finished PSI-BLAST
10/01/2012 23:50:28 : INFO  : Running Buildali to generate a3m file
11/01/2012 00:02:31 : INFO  : Converting to HMM
11/01/2012 00:02:42 : INFO  : Calibrating HMM
11/01/2012 00:03:02 : INFO  : Searching HMM database
11/01/2012 00:11:10 : INFO  : Finished buildali
11/01/2012 00:11:13 : INFO  : Predicting secondary structure
11/01/2012 00:11:25 : INFO  : Predicted secondary structure (PSI-Pred)
11/01/2012 00:11:28 : INFO  : Predicting Disordered regions
11/01/2012 00:11:33 : INFO  : Predicted Disorder (Disopred)
11/01/2012 00:11:36 : INFO  : Running memsat_svm check
11/01/2012 00:15:20 : INFO  : Globular protein
11/01/2012 00:15:22 : INFO  : Predicted Transmembrane (memsat_svm) ID 'a1e5789b51529c79'
11/01/2012 00:15:24 : INFO  : Initialising fold library search
11/01/2012 00:15:29 : INFO  : Initialised search input
11/01/2012 00:15:32 : INFO  : Building Ensemble models
11/01/2012 00:15:36 : INFO  : Building hh.c2iutA_.model.1.pdb
11/01/2012 00:15:57 : INFO  : Building hh.c2iuuE_.model.2.pdb
11/01/2012 00:16:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a1e5789b51529c79/hh.c2iuuE_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a1e5789b51529c79/c2iuuE_.2.pdb
11/01/2012 00:16:21 : INFO  : Building hh.d1e9ra_.model.3.pdb
11/01/2012 00:16:38 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a1e5789b51529c79/hh.d1e9ra_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a1e5789b51529c79/d1e9ra_.3.pdb
11/01/2012 00:16:43 : INFO  : Building hh.c2iusB_.model.4.pdb
11/01/2012 00:17:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a1e5789b51529c79/hh.c2iusB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a1e5789b51529c79/c2iusB_.4.pdb
11/01/2012 00:17:07 : INFO  : Building hh.d2ve8a1.model.5.pdb
11/01/2012 00:17:24 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a1e5789b51529c79/hh.d2ve8a1.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a1e5789b51529c79/d2ve8a1.5.pdb
11/01/2012 00:17:29 : INFO  : Building hh.d2j5pa1.model.6.pdb
11/01/2012 00:17:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a1e5789b51529c79/hh.d2j5pa1.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a1e5789b51529c79/d2j5pa1.6.pdb
11/01/2012 00:17:53 : INFO  : Building c2iutA_.1.pdb
11/01/2012 00:18:13 : INFO  : Building c2iuuE_.2.pdb
11/01/2012 00:18:34 : INFO  : Building d1e9ra_.3.pdb
11/01/2012 00:18:55 : INFO  : Building c2iusB_.4.pdb
11/01/2012 00:19:15 : INFO  : Building d2ve8a1.5.pdb
11/01/2012 00:19:36 : INFO  : Building d2j5pa1.6.pdb
11/01/2012 00:19:55 : INFO  : Building c2r2aB_.7.pdb
11/01/2012 00:20:14 : INFO  : Building c3b9pA_.8.pdb
11/01/2012 00:20:36 : INFO  : Building c3l9oA_.9.pdb
11/01/2012 00:20:56 : INFO  : Building c2w0mA_.10.pdb
11/01/2012 00:21:14 : INFO  : Building d1byia_.11.pdb
11/01/2012 00:21:33 : INFO  : Building d2i3ba1.12.pdb
11/01/2012 00:21:52 : INFO  : Building c3hu2C_.13.pdb
11/01/2012 00:22:10 : INFO  : Building c1xwiA_.14.pdb
11/01/2012 00:22:29 : INFO  : Building d1vmaa2.15.pdb
11/01/2012 00:22:48 : INFO  : Building d1cr2a_.16.pdb
11/01/2012 00:23:06 : INFO  : Building c2d3wB_.17.pdb
11/01/2012 00:23:24 : INFO  : Building d2qy9a2.18.pdb
11/01/2012 00:23:42 : INFO  : Building c3of5A_.19.pdb
11/01/2012 00:24:01 : INFO  : Building d1g6oa_.20.pdb
11/01/2012 00:26:29 : INFO  : Finished HH model building
11/01/2012 00:26:31 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
11/01/2012 00:27:52 : INFO  : html domain output complete ID 'a1e5789b51529c79'
11/01/2012 01:03:00 : INFO  : Run end  : Wed Jan 11 01:02:59 GMT 2012
