325 c3fluD_ Probab=69.07   E-value=5.4  Score=16.37  Aligned_columns=127  Identities=17%

Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCC--
Q ss_conf             998766899899999885506980589975088977258998999999988994999998089846899985047758--
Q batch____         1 MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAEAQRLRAQGLDIVVGVVETHGRKDTAAMLEGLAVL--   78 (894)
Q Consensus         1 ~~~~~~r~~~~~~l~~~~~~~~g~l~i~~g~~~gvgkt~~ml~~~~~~~~~g~dvv~g~~e~h~r~~t~~~~~~l~~~--   78 (894)
                      |+++++    .++++...+.-.|+.+|+.|  .|-.-|..+++.++..++.|.|-|.=.--.+.++.-+.+++=...|  
T Consensus        53 Ls~~Er----~~i~~~~~~~~~~~~~vi~g--v~~~~~~~~i~~a~~a~~~Gad~v~~~pP~~~~~s~~~i~~~~~~ia~  126 (293)
T c3fluD_          53 LSVEEH----TAVIEAVVKHVAKRVPVIAG--TGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAE  126 (293)
T ss_dssp             SCHHHH----HHHHHHHHHHHTTSSCEEEE--CCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCHHHH----HHHHHHHHHHCCCCCEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             799999----99999999960899739996--588999999999999985499899993887889998899999999997


Q ss_pred             --CCEEEEE----CCEEEEECCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             --8405454----8857341497899721896999917345999999998775779999976983550
Q batch____        79 --PLKRQAY----RGRHISEFDLDAALARRPALILMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFT  140 (894)
Q Consensus        79 --p~~~~~~----~~~~~~e~d~~~~l~~~p~~~lvdelah~n~~~~~~~kr~~dv~~ll~~gi~v~t  140 (894)
                        +..-+-|    .....-..|+=..|+..|.++-+-+       .+.+..+++++.......+.|++
T Consensus       127 ~~~~pi~~Yn~P~~tg~~~s~~~~~~L~~~~~v~giK~-------s~~d~~~~~~l~~~~~~~~~v~~  187 (293)
T c3fluD_         127 ATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVKE-------ASGNIGSNIELINRAPEGFVVLS  187 (293)
T ss_dssp             TCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEEE-------CSCCHHHHHHHHHHSCTTCEEEE
T ss_pred             HCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEC-------CCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             54998999967533367759899999834798889963-------88998999999986399879994