BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (72 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P21418 Uncharacterized protein ydfC n=49 Tax=Escherichi... 145 5e-34 UniRef50_C8U8P3 Conserved predicted protein n=2 Tax=Escherichia ... 93 3e-18 UniRef50_B7LJJ6 Putative uncharacterized protein n=4 Tax=Enterob... 54 2e-06 >UniRef50_P21418 Uncharacterized protein ydfC n=49 Tax=Escherichia RepID=YDFC_ECOLI Length = 72 Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAA 60 MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAA Sbjct: 1 MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAA 60 Query: 61 ALSIARMITYPR 72 ALSIARMITYPR Sbjct: 61 ALSIARMITYPR 72 >UniRef50_C8U8P3 Conserved predicted protein n=2 Tax=Escherichia coli RepID=C8U8P3_ECO10 Length = 79 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 43/44 (97%), Positives = 43/44 (97%) Query: 1 MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAE 44 M KREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAE Sbjct: 1 MHKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAE 44 >UniRef50_B7LJJ6 Putative uncharacterized protein n=4 Tax=Enterobacteriaceae RepID=B7LJJ6_ESCF3 Length = 73 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 40/66 (60%) Query: 1 MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAA 60 M K EP I+AP YT++E+YEWM +K+ A L+ R + ++L L+Q+IT L + Sbjct: 6 MHKTEPKIVAPGYTNEEIYEWMAKKLAAINQLREVLSYRQETIDSLKKLDQEITVLSQDV 65 Query: 61 ALSIAR 66 L I + Sbjct: 66 TLDIVQ 71 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P21418 Uncharacterized protein ydfC n=49 Tax=Escherichi... 104 1e-21 UniRef50_B7LJJ6 Putative uncharacterized protein n=4 Tax=Enterob... 95 8e-19 UniRef50_C8U8P3 Conserved predicted protein n=2 Tax=Escherichia ... 82 5e-15 Sequences not found previously or not previously below threshold: UniRef50_C0AX10 Putative uncharacterized protein n=1 Tax=Proteus... 40 0.022 CONVERGED! >UniRef50_P21418 Uncharacterized protein ydfC n=49 Tax=Escherichia RepID=YDFC_ECOLI Length = 72 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAA 60 MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAA Sbjct: 1 MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAA 60 Query: 61 ALSIARMITYPR 72 ALSIARMITYPR Sbjct: 61 ALSIARMITYPR 72 >UniRef50_B7LJJ6 Putative uncharacterized protein n=4 Tax=Enterobacteriaceae RepID=B7LJJ6_ESCF3 Length = 73 Score = 94.8 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 40/66 (60%) Query: 1 MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAA 60 M K EP I+AP YT++E+YEWM +K+ A L+ R + ++L L+Q+IT L + Sbjct: 6 MHKTEPKIVAPGYTNEEIYEWMAKKLAAINQLREVLSYRQETIDSLKKLDQEITVLSQDV 65 Query: 61 ALSIAR 66 L I + Sbjct: 66 TLDIVQ 71 >UniRef50_C8U8P3 Conserved predicted protein n=2 Tax=Escherichia coli RepID=C8U8P3_ECO10 Length = 79 Score = 82.1 bits (201), Expect = 5e-15, Method: Composition-based stats. Identities = 43/44 (97%), Positives = 43/44 (97%) Query: 1 MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAE 44 M KREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAE Sbjct: 1 MHKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAE 44 >UniRef50_C0AX10 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AX10_9ENTR Length = 67 Score = 40.1 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 4 REPVIIAP-DYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAAAL 62 EP II P ++TD ++ +WM++K+++ + L N R + + L+ L+ +I +A+ Sbjct: 3 TEPTIIPPANFTDRDVVDWMKEKLSSIKVLGELNVRREELVDKLAKLDAEIAEYANKSAI 62 Query: 63 SIAR 66 R Sbjct: 63 QTQR 66 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.129 0.353 Lambda K H 0.267 0.0382 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 236,107,032 Number of Sequences: 3077464 Number of extensions: 5996646 Number of successful extensions: 28191 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28184 Number of HSP's gapped (non-prelim): 7 length of query: 72 length of database: 1,040,396,356 effective HSP length: 43 effective length of query: 29 effective length of database: 908,065,404 effective search space: 26333896716 effective search space used: 26333896716 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 87 (38.2 bits)