BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (225 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P21866 KDP operon transcriptional regulatory protein kd... 453 e-126 UniRef50_C7RUD8 Two component transcriptional regulator, winged ... 289 5e-77 UniRef50_C6BG23 Two component transcriptional regulator, winged ... 288 1e-76 UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteob... 287 2e-76 UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=... 278 1e-73 UniRef50_A9F790 Two component system transcriptional regulatory ... 257 2e-67 UniRef50_Q2NW72 KDP operon transcriptional regulatory protein n=... 256 4e-67 UniRef50_C5BG90 KDP operon transcriptional regulatory protein Kd... 251 1e-65 UniRef50_D0KIR4 Two component transcriptional regulator, winged ... 243 4e-63 UniRef50_D2R313 Two component transcriptional regulator, winged ... 243 4e-63 UniRef50_Q392X6 Two component transcriptional regulator, winged ... 234 1e-60 UniRef50_A0LU58 Two component transcriptional regulator, winged ... 231 1e-59 UniRef50_Q39AE7 Two component transcriptional regulator, winged ... 227 2e-58 UniRef50_C1A1E5 Turgor pressure transcriptional regulator n=5 Ta... 221 1e-56 UniRef50_A5N881 KdpE n=41 Tax=Bacteria RepID=A5N881_CLOK5 220 2e-56 UniRef50_B5EH76 Two component transcriptional regulator, winged ... 220 3e-56 UniRef50_Q39SW2 Two component transcriptional regulator, winged ... 217 3e-55 UniRef50_A9KJX4 Two component transcriptional regulator, winged ... 216 3e-55 UniRef50_D1VGE4 Two component transcriptional regulator, winged ... 215 9e-55 UniRef50_Q6MM81 Two-component response regulator KdpE n=1 Tax=Bd... 214 2e-54 UniRef50_B2UQC6 Two component transcriptional regulator, winged ... 214 2e-54 UniRef50_B3E0R0 DNA-binding response regulator KdpE (REC-wHTH do... 208 9e-53 UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteob... 207 2e-52 UniRef50_B0RVC3 Two-component system response regulator n=129 Ta... 206 5e-52 UniRef50_Q72TM3 Response regulator n=2 Tax=Leptospira interrogan... 204 2e-51 UniRef50_Q2W608 Response regulator consisting of a CheY-like rec... 202 1e-50 UniRef50_B0SY74 Two component transcriptional regulator, winged ... 201 1e-50 UniRef50_Q30T71 Two component transcriptional regulator, winged ... 201 1e-50 UniRef50_C1ABQ2 OmpR family two-component response regulator n=1... 201 2e-50 UniRef50_B9Y2I0 Putative uncharacterized protein n=3 Tax=Firmicu... 200 3e-50 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 199 7e-50 UniRef50_B8IF93 Two component transcriptional regulator, winged ... 198 1e-49 UniRef50_A9AXT6 Two component transcriptional regulator, winged ... 197 3e-49 UniRef50_C9XT65 Two-component response regulator n=18 Tax=Bacter... 197 3e-49 UniRef50_Q2J7U7 Two component transcriptional regulator, winged ... 194 3e-48 UniRef50_C5SPS9 Two component transcriptional regulator, winged ... 193 5e-48 UniRef50_A8L9L0 Two component transcriptional regulator, winged ... 192 8e-48 UniRef50_D1B309 Response regulator receiver n=1 Tax=Sulfurospiri... 191 2e-47 UniRef50_Q2GBD9 Two component transcriptional regulator, winged ... 190 4e-47 UniRef50_B4RHL6 Response regulator(With CheY-like receiver domai... 189 8e-47 UniRef50_C2BL33 Response regulator n=2 Tax=Corynebacterium RepID... 186 5e-46 UniRef50_B8J1F3 Two component transcriptional regulator, winged ... 186 7e-46 UniRef50_A4WZ32 Transposase and inactivated derivatives-like pro... 185 1e-45 UniRef50_UPI000185BED4 KDP operon transcriptional regulatory pro... 182 1e-44 UniRef50_C2JNW2 Response regulator n=9 Tax=Enterococcus RepID=C2... 180 3e-44 UniRef50_A9QSD4 Osmosensitive K+ channel response regulator n=22... 178 1e-43 UniRef50_C1AAN0 OmpR family two-component response regulator n=1... 177 2e-43 UniRef50_B0T7K3 Two component transcriptional regulator, winged ... 177 2e-43 UniRef50_Q1IUD6 Two component transcriptional regulator, winged ... 177 3e-43 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 177 3e-43 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 176 7e-43 UniRef50_A9VZA6 Response regulator receiver n=30 Tax=Alphaproteo... 173 4e-42 UniRef50_B0NK63 Putative uncharacterized protein n=5 Tax=Bacteri... 173 4e-42 UniRef50_C1ACD7 OmpR family two-component response regulator n=1... 173 5e-42 UniRef50_C7H2X2 KDP operon transcriptional regulatory protein Kd... 172 7e-42 UniRef50_C2C899 DNA-binding response regulator KdpE n=9 Tax=Vibr... 171 1e-41 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 170 3e-41 UniRef50_Q3ZWF6 DNA-binding response regulator n=1 Tax=Dehalococ... 169 8e-41 UniRef50_D1CC84 Two component transcriptional regulator, winged ... 167 2e-40 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 164 2e-39 UniRef50_D1BX45 Two component transcriptional regulator, winged ... 163 3e-39 UniRef50_D1C556 Two component transcriptional regulator, winged ... 163 4e-39 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 162 5e-39 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 162 6e-39 UniRef50_B8GBC5 Two component transcriptional regulator, winged ... 162 8e-39 UniRef50_A7K2K9 DNA-binding response regulator KdpE n=19 Tax=Gam... 162 1e-38 UniRef50_C7GCA3 KDP operon transcriptional regulatory protein Kd... 162 1e-38 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 162 1e-38 UniRef50_D1CGU9 Two component transcriptional regulator, winged ... 160 2e-38 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 160 2e-38 UniRef50_A5IUM5 Two component transcriptional regulator, winged ... 160 3e-38 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 160 3e-38 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 159 8e-38 UniRef50_Q187R8 Two-component response regulator n=6 Tax=Clostri... 158 1e-37 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 158 1e-37 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 158 1e-37 UniRef50_C6NTZ4 DNA binding response regulator KdpE n=1 Tax=Acid... 157 2e-37 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 157 2e-37 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 157 3e-37 UniRef50_A9FZS4 Response regulator n=2 Tax=Myxococcales RepID=A9... 157 3e-37 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 157 4e-37 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 156 5e-37 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 156 6e-37 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 155 9e-37 UniRef50_D0LLH3 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_B9KYS7 KDP operon transcriptional regulatory protein kd... 154 2e-36 UniRef50_C6PZ92 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1... 154 2e-36 UniRef50_C1F4X4 KdpE n=1 Tax=Acidobacterium capsulatum ATCC 5119... 154 3e-36 UniRef50_B9L1T3 Phosphate regulatory protein n=1 Tax=Thermomicro... 153 4e-36 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 153 5e-36 UniRef50_UPI0001C31C36 two component transcriptional regulator, ... 152 6e-36 UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerof... 152 9e-36 UniRef50_UPI0001AEBE73 response regulator n=1 Tax=Alteromonas ma... 152 1e-35 UniRef50_B5EL18 Two component transcriptional regulator, winged ... 151 1e-35 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 151 1e-35 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_A6LQJ3 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 150 2e-35 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 150 2e-35 UniRef50_C3RMH7 Signal transduction regulator n=8 Tax=Bacteria R... 150 2e-35 UniRef50_B0TWK4 Response regulator receiver protein n=9 Tax=Fran... 150 3e-35 UniRef50_C9XSY6 Two-component response regulator n=15 Tax=Firmic... 150 3e-35 UniRef50_A5FU14 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_B8I272 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob... 150 4e-35 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 149 5e-35 UniRef50_B8I014 Two component transcriptional regulator, winged ... 149 5e-35 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 149 6e-35 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 149 6e-35 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 149 7e-35 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 149 7e-35 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 149 7e-35 UniRef50_C3WA46 Two-component response regulator n=6 Tax=Fusobac... 149 1e-34 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 149 1e-34 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_Q020N6 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 148 1e-34 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_C9XRU4 Two-component system response regulator n=12 Tax... 148 2e-34 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 148 2e-34 UniRef50_C7M0J0 Two component transcriptional regulator, winged ... 148 2e-34 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 148 2e-34 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 147 2e-34 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 147 2e-34 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_A1SG19 Response regulator receiver n=7 Tax=Actinomyceta... 147 2e-34 UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostr... 147 3e-34 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_UPI0001C31E43 two component transcriptional regulator, ... 147 3e-34 UniRef50_B8FS97 Two component transcriptional regulator, winged ... 147 4e-34 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 146 4e-34 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 146 4e-34 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 146 4e-34 UniRef50_B0MRC9 Putative uncharacterized protein n=1 Tax=Eubacte... 146 5e-34 UniRef50_Q3ZWG2 DNA-binding response regulator n=1 Tax=Dehalococ... 146 5e-34 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 146 5e-34 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 146 6e-34 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 146 6e-34 UniRef50_A8SR47 Putative uncharacterized protein n=2 Tax=Clostri... 146 6e-34 UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coproco... 145 7e-34 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 145 7e-34 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 145 8e-34 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 145 8e-34 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 145 9e-34 UniRef50_UPI0001692EE0 response regulator n=1 Tax=Paenibacillus ... 145 1e-33 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 145 1e-33 UniRef50_A9WI76 Response regulator receiver n=2 Tax=Chloroflexus... 145 1e-33 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 145 1e-33 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 145 1e-33 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 145 1e-33 UniRef50_C8WRL6 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 144 2e-33 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 144 2e-33 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 144 2e-33 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 144 3e-33 UniRef50_C1A8B6 OmpR family two-component response regulator n=1... 144 3e-33 UniRef50_B1XPE6 Two-component response regulator; transcriptiona... 144 3e-33 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 144 3e-33 UniRef50_C1SI97 Response regulator with CheY-like receiver domai... 143 3e-33 UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostr... 143 4e-33 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 143 4e-33 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 143 4e-33 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 143 4e-33 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 143 4e-33 UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia... 143 4e-33 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 143 5e-33 UniRef50_B2V706 Two component transcriptional regulator, winged ... 143 5e-33 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 143 5e-33 UniRef50_Q21BK9 Two component transcriptional regulator, winged ... 142 6e-33 UniRef50_A9B2W4 Two component transcriptional regulator, winged ... 142 7e-33 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 142 8e-33 UniRef50_A5GA68 Two component transcriptional regulator, winged ... 142 8e-33 UniRef50_C0D8Y6 Putative uncharacterized protein n=3 Tax=Clostri... 142 8e-33 UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional r... 142 8e-33 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 142 1e-32 UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax... 142 1e-32 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 142 1e-32 UniRef50_Q1J251 Two component transcriptional regulator PhoB n=5... 142 1e-32 UniRef50_C6LEL9 DNA-binding response regulator RegX3 n=3 Tax=Clo... 142 1e-32 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 142 1e-32 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 142 1e-32 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 141 1e-32 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 141 2e-32 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 141 2e-32 UniRef50_C9ZA01 Putative two-component system response regulator... 141 2e-32 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 141 2e-32 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 141 2e-32 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 141 2e-32 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 140 2e-32 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 140 2e-32 UniRef50_Q3ZA31 DNA-binding response regulator n=3 Tax=Dehalococ... 140 2e-32 UniRef50_C7LNV6 Two component transcriptional regulator, winged ... 140 2e-32 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_UPI0001B559F0 two-component system, response regulator ... 140 3e-32 UniRef50_Q0ICD5 Two-component response regulator n=5 Tax=Synecho... 140 3e-32 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 140 3e-32 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 140 3e-32 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 140 3e-32 UniRef50_C3CKG2 Two-component response regulator n=11 Tax=Bacill... 140 4e-32 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 139 5e-32 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 139 5e-32 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 139 5e-32 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 139 6e-32 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 139 6e-32 UniRef50_C2V3X6 Two component transcriptional regulator, winged ... 139 6e-32 UniRef50_C4L703 Two component transcriptional regulator, winged ... 139 7e-32 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 139 7e-32 UniRef50_D1C683 Two component transcriptional regulator, winged ... 139 1e-31 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 138 1e-31 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 138 1e-31 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 138 1e-31 UniRef50_C0MDU1 Response regulator protein n=6 Tax=Streptococcus... 138 1e-31 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 138 1e-31 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 138 1e-31 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 138 1e-31 UniRef50_A6Q965 Two-component response regulator n=1 Tax=Sulfuro... 138 1e-31 UniRef50_Q188S8 Two-component response regulator n=28 Tax=Bacter... 138 1e-31 UniRef50_A9AWE4 Two component transcriptional regulator, winged ... 138 1e-31 UniRef50_A9WLJ1 Two-component response regulator n=4 Tax=Actinom... 138 1e-31 UniRef50_A5V0J0 Two component transcriptional regulator, winged ... 138 1e-31 UniRef50_C6WIA6 Two component transcriptional regulator, winged ... 138 2e-31 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 138 2e-31 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 138 2e-31 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 138 2e-31 UniRef50_A3NL94 DNA-binding response regulator n=27 Tax=pseudoma... 138 2e-31 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 138 2e-31 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 137 2e-31 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 137 2e-31 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 137 3e-31 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 137 3e-31 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 137 3e-31 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 137 3e-31 UniRef50_A7VHB9 Putative uncharacterized protein n=5 Tax=Firmicu... 137 3e-31 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 137 3e-31 UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria R... 137 3e-31 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 137 3e-31 UniRef50_B8G223 Two component transcriptional regulator, winged ... 137 4e-31 UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermom... 137 4e-31 UniRef50_A4AL32 Putative two-component system response regulator... 136 4e-31 >UniRef50_P21866 KDP operon transcriptional regulatory protein kdpE n=92 Tax=Bacteria RepID=KDPE_ECOLI Length = 225 Score = 453 bits (1165), Expect = e-126, Method: Compositional matrix adjust. Identities = 225/225 (100%), Positives = 225/225 (100%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS Sbjct: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV Sbjct: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML Sbjct: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 >UniRef50_C7RUD8 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=C7RUD8_9PROT Length = 235 Score = 289 bits (739), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 135/223 (60%), Positives = 173/223 (77%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +++VEDE IRRF++ ALE +G +VFEA++++RGL+EA TR+ DL++LDLGLPDGDGI Sbjct: 6 TGIVVVEDEANIRRFIKLALESEGFQVFEADSVKRGLIEAGTRRADLVVLDLGLPDGDGI 65 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +FIRDLR WS +PV+VLSAR+ E DK+AALDAGADDYL+KPFG EL AR+R LRR S Sbjct: 66 DFIRDLRAWSEIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRSR 125 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + L +F + VDLA R + R +HLTPIE+RLL+ L+ N VLT RQLL VW Sbjct: 126 SAGGTALAEFGSIRVDLARRTVERDGAPLHLTPIEYRLLSYLIANPDCVLTHRQLLKNVW 185 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 GP VE SHY+R+YMG+LR+K+E DPARP+H TE G+GYRF+ Sbjct: 186 GPGHVEDSHYVRVYMGNLRKKIEDDPARPKHLRTEAGVGYRFV 228 >UniRef50_C6BG23 Two component transcriptional regulator, winged helix family n=69 Tax=Bacteria RepID=C6BG23_RALP1 Length = 234 Score = 288 bits (736), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 140/222 (63%), Positives = 174/222 (78%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+++DE IRRF+R ALE +G V EA+ ++RGL+EA TR+PD +ILDLGLPDGDG++ Sbjct: 11 TVLVIDDEPHIRRFVRAALEEEGCEVHEADRVERGLIEAGTRQPDAVILDLGLPDGDGMQ 70 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 IR+LR W+ VPV+VLSAR +E DKI ALDAGADDYL+KPFG+GEL ARLRV LRRH+ Sbjct: 71 LIRELRTWTEVPVLVLSARVDERDKIEALDAGADDYLTKPFGVGELVARLRVLLRRHAKR 130 Query: 123 TAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 +++F +V VDLA R++ R E VHLTPIE+RLLAVLL G V+T R+LL +VW Sbjct: 131 GEDGGSVIRFGEVEVDLARRLVSRNGEAVHLTPIEYRLLAVLLGRRGTVMTHRELLREVW 190 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 GP + SHYLRIYMGHLR KLE+DPARP H +TE G+GYRF Sbjct: 191 GPAHSDSSHYLRIYMGHLRHKLERDPARPEHLLTEVGVGYRF 232 >UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteobacteria RepID=Q0K8J0_RALEH Length = 231 Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 143/222 (64%), Positives = 172/222 (77%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VEDE IRRF+R AL+ +G V EAE+LQRGL+EA TR+PDL+ILDLGLPDGDG+ Sbjct: 8 TVLLVEDEPHIRRFVRAALQDEGCTVHEAESLQRGLIEAGTRQPDLVILDLGLPDGDGVS 67 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-SA 121 I DLR W+ VPV+VLSAR+ E++KI ALDAGADDYL+KPFG+GEL ARLRV RRH A Sbjct: 68 MIGDLRTWTEVPVLVLSARTGEAEKIRALDAGADDYLTKPFGVGELVARLRVLQRRHVRA 127 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 V F ++ VDLA R + R E VHLTPIEFRLLAVLL + GKV+T R+LL +VW Sbjct: 128 GAQGRAQVAFGEIAVDLANRQVTRAGEPVHLTPIEFRLLAVLLAHRGKVMTHRELLREVW 187 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 GP+ + S YLR+YMGHLR KLE DPARP + +TE G+GYRF Sbjct: 188 GPSHADSSQYLRVYMGHLRHKLEADPARPAYLLTEIGVGYRF 229 >UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X641_OXAFO Length = 231 Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 126/221 (57%), Positives = 169/221 (76%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L VEDE IRRF++ ALE + VFEA+ ++RGL+EAATR+PDL++LDLGLPDGDG+EF Sbjct: 7 ILTVEDESNIRRFVKLALENENYEVFEADGVKRGLIEAATRRPDLVVLDLGLPDGDGLEF 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 I DLR WS++P+IVLSARS E+DKI+ALDAGADDYL KPFG GEL AR+R LRR T Sbjct: 67 ITDLRAWSSIPIIVLSARSNENDKISALDAGADDYLVKPFGAGELLARVRAQLRRQQPGT 126 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 +P ++FSDV +D RV+ + +HLTPIE+R+L + + +V+T +QLL +WGP Sbjct: 127 PNEPFIRFSDVCIDPVRRVVEKNGAPIHLTPIEYRILIFMTSQPDRVITHQQLLKAIWGP 186 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 E HY+R++M +LR+K+E++ + PRH ITE GIGYRF+ Sbjct: 187 GHTEDMHYIRVHMANLRKKIEENASMPRHLITEAGIGYRFV 227 >UniRef50_A9F790 Two component system transcriptional regulatory protein n=34 Tax=Proteobacteria RepID=A9F790_SORC5 Length = 234 Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 132/224 (58%), Positives = 158/224 (70%), Gaps = 4/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL++EDE +RRFLR L G R+ EAET G+ +A TR PDL++LDLGLPD DG+E Sbjct: 8 VLLIEDEPQMRRFLRAMLAARGYRLVEAETGSDGIAQATTRNPDLVLLDLGLPDMDGLEV 67 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R LR+WSAVP+IVLSAR +E DKI ALD GADDYL+KPF GEL ARLRVALR ++ Sbjct: 68 TRRLREWSAVPIIVLSARGQEQDKIDALDGGADDYLTKPFSAGELLARLRVALRHAASAA 127 Query: 124 APDPL----VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 D+ VDLA RV+ R EEVHLTPIE++LL L+ +AGKVLT RQLL + Sbjct: 128 RGATAEGHRFAVQDIEVDLARRVVLRAGEEVHLTPIEYKLLTTLIRHAGKVLTHRQLLGE 187 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWGP +HYLR+YM LR KLE+DPARP ITE G+GYR Sbjct: 188 VWGPAYAGQAHYLRVYMAQLRHKLERDPARPLILITEPGVGYRL 231 >UniRef50_Q2NW72 KDP operon transcriptional regulatory protein n=4 Tax=Proteobacteria RepID=Q2NW72_SODGM Length = 241 Score = 256 bits (654), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 130/209 (62%), Positives = 160/209 (76%), Gaps = 4/209 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LI++DE+ I RFLR +LE D ++VFEAETL RGL AA+R+PDL+ILDLGLPDGDG Sbjct: 1 MKTLLIIDDEKHICRFLRASLESDDIKVFEAETLARGLSTAASRQPDLVILDLGLPDGDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRV-ALRRH 119 + FIR+ RQWS P+I LSAR E DKI ALDAGADD+L KPFG+GELQAR+R +LRR Sbjct: 61 VTFIREFRQWSDKPIIFLSARVGEDDKIEALDAGADDFLCKPFGMGELQARVRWRSLRR- 119 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 A + ++ F DVTV+L+A + R +HLTP E RLLA+L++N GKVLTQ +L Q Sbjct: 120 -GENAREQVISFGDVTVNLSAHTVTRAGNVLHLTPTECRLLALLVSNPGKVLTQAHILKQ 178 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPA 208 VWGP A ++S YLRIYMGHLR KLE DPA Sbjct: 179 VWGPTA-DNSQYLRIYMGHLRHKLESDPA 206 >UniRef50_C5BG90 KDP operon transcriptional regulatory protein KdpE n=1 Tax=Edwardsiella ictaluri 93-146 RepID=C5BG90_EDWI9 Length = 245 Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 125/180 (69%), Positives = 150/180 (83%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIVEDEQAIRRF+R ALE +G RV +A+ LQRGL+EAATR+PDLIILDLGLPDGDG+E Sbjct: 7 TILIVEDEQAIRRFVRAALENEGWRVTDADGLQRGLIEAATRQPDLIILDLGLPDGDGME 66 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 FIRDLR+WSA+PVIVLSAR +E+DK+ LD GA+D+LSKPFG+ EL AR+RVALRRH+ Sbjct: 67 FIRDLRRWSAIPVIVLSARCDEADKVETLDTGAEDFLSKPFGVAELLARVRVALRRHTRQ 126 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 P + F+DV VDL AR + R E +HLTPIEFRLLA L+ N+GKVLTQRQLL+ VWG Sbjct: 127 QQEIPQICFADVQVDLLARNVTRHGELLHLTPIEFRLLAELIANSGKVLTQRQLLSSVWG 186 >UniRef50_D0KIR4 Two component transcriptional regulator, winged helix family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KIR4_PECWW Length = 204 Score = 243 bits (620), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 117/152 (76%), Positives = 129/152 (84%) Query: 73 VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFS 132 +PVIVLSAR++E DKIAALDAGADDYL+KPFGIGE ARLRVALRRH+ T PLV F Sbjct: 52 LPVIVLSARTDEQDKIAALDAGADDYLTKPFGIGERLARLRVALRRHNNTQQETPLVSFG 111 Query: 133 DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYL 192 +TVDL R ++R +E+HLTPIEFRLLA LL N GKVLTQRQLL QVWGPNAVEHSHYL Sbjct: 112 TITVDLLNRQVNRDGQELHLTPIEFRLLATLLANPGKVLTQRQLLTQVWGPNAVEHSHYL 171 Query: 193 RIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 RIYMGHLRQKLE DPARPRH +TET IGYRF+ Sbjct: 172 RIYMGHLRQKLESDPARPRHLLTETAIGYRFI 203 >UniRef50_D2R313 Two component transcriptional regulator, winged helix family n=32 Tax=Bacteria RepID=D2R313_9PLAN Length = 235 Score = 243 bits (619), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 115/220 (52%), Positives = 156/220 (70%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLI+EDE IR+ LR +L +G R+ EA + GL A + PDLI+LDLGLPD DG E Sbjct: 13 VLIIEDEAPIRKMLRASLTSEGYRIQEASSAAEGLKIATSPPPDLILLDLGLPDRDGQEV 72 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + LR+W P+I+LSAR +ES KI ALD GADDY++KPF +GEL AR+R ALR T Sbjct: 73 LEQLREWYTSPIIILSARDQESQKIKALDHGADDYVTKPFSMGELLARMRTALRHSHRTG 132 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 D+ VD A+R+++R +EEVHLTP+E++LL ++ +AGKVLT R LL +VWGP Sbjct: 133 TEATATTIGDLKVDFASRLVYRKQEEVHLTPLEYKLLITMIKHAGKVLTHRFLLREVWGP 192 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +HYLR+++ LR+K+E DPARP++ +TE G+GYRF Sbjct: 193 QDSQENHYLRVFVAGLRRKIEVDPARPQYILTEQGVGYRF 232 >UniRef50_Q392X6 Two component transcriptional regulator, winged helix family n=29 Tax=Bacteria RepID=Q392X6_BURS3 Length = 250 Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 128/226 (56%), Positives = 160/226 (70%), Gaps = 3/226 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 + VLIVEDE IRRF+R ALE +G+ EA T + + A++ KPDL+I+DLGLPD DG Sbjct: 4 SRVLIVEDESDIRRFVRMALEQEGLDTCEASTAREARMYASSSKPDLVIVDLGLPDDDGK 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 FIR+LR+WS VPVIVLSAR +E +K+AALDAGADDYL KPFG+ EL AR R LRR Sbjct: 64 TFIRELREWSTVPVIVLSARQQEVEKVAALDAGADDYLPKPFGVPELLARARAQLRRAAF 123 Query: 120 -SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 SA +V+F DVTVDL + RG + VHLT +EFRLLA L+ G V+ RQLL Sbjct: 124 VSADGQSSSIVRFGDVTVDLGKHEVARGGDPVHLTRLEFRLLAALIRARGGVIAARQLLA 183 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +VWG + + +HY+R+YM +LRQKLE PARPRH +TE GYR + Sbjct: 184 EVWGIHDADRAHYVRVYMTNLRQKLEPVPARPRHLLTELQFGYRLV 229 >UniRef50_A0LU58 Two component transcriptional regulator, winged helix family n=16 Tax=Bacteria RepID=A0LU58_ACIC1 Length = 240 Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/225 (51%), Positives = 156/225 (69%), Gaps = 1/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +VL+V+DE AI R LR L G V+ A + L KPDL+ILDLGLPD DG Sbjct: 1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 I+ I +R WS +P++VLSAR +E+ K+ ALDAGADDY++KPFG+ EL ARLR ++RR Sbjct: 61 IDVIGGVRGWSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRAR 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T+A +P + D T+DLA + + RG+E + LTP E+ +L +L +AG+++T RQLL+ V Sbjct: 121 PTSA-EPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDV 179 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WGP +HYLR+YM LR+KLE DPA PR+ TE GIGYR ++ Sbjct: 180 WGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRLVV 224 >UniRef50_Q39AE7 Two component transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. 383 RepID=Q39AE7_BURS3 Length = 232 Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 121/221 (54%), Positives = 157/221 (71%), Gaps = 1/221 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 ++IV++++ IR F+R AL+ + M V EA T G+ R+PDLI+ D L D G E Sbjct: 8 IVIVDEDRFIRHFVRVALKAERMHVCEAATGAAGVAAVGARRPDLIVADTNLHDIGGTEL 67 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 IR LR SA P+IVLSA S ESDK+AALDAGADDYL+KPFG EL AR+R LRR + Sbjct: 68 IRALRACSAAPLIVLSALSAESDKVAALDAGADDYLTKPFGAAELIARIRAHLRRQAGGG 127 Query: 124 APDPL-VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 D + V F DVTVDLA R + RG VHL+PIEFRLLA L ++AG++LT +LL++VWG Sbjct: 128 RIDAVRVCFGDVTVDLADRQVLRGGARVHLSPIEFRLLAALAHHAGRLLTHDRLLSEVWG 187 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +HYLR+Y+GHLR+KLE+DP RP + +TETG+GYR Sbjct: 188 ATHGKDAHYLRVYVGHLRRKLERDPRRPAYILTETGVGYRL 228 >UniRef50_C1A1E5 Turgor pressure transcriptional regulator n=5 Tax=Actinomycetales RepID=C1A1E5_RHOE4 Length = 226 Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 114/226 (50%), Positives = 151/226 (66%), Gaps = 1/226 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M+ +L+V+DE I R LR L G V A T L AA R PD++ILDLGLPD DG Sbjct: 1 MSRILVVDDEPQILRALRINLTVRGYDVVTASTGAGALRAAAERPPDVVILDLGLPDMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGE-LQARLRVALRRH 119 E + LR W PVIVLSAR++ +DK+ ALDAGADDY++KPFG+ E L A R Sbjct: 61 TEVLAGLRGWCTAPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARVRAAARRGT 120 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 SA +P V+ + TVDLAA+ + R E+VHLTP E+ +L +L+ N GK++ Q++LL + Sbjct: 121 SAADTSEPSVETASFTVDLAAKTVSRRGEQVHLTPTEWGMLEMLVRNRGKLVGQKELLRE 180 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWGP +HYLR+Y+ LR+KLE DPA P+H ITE G+GYRF++ Sbjct: 181 VWGPAYDTETHYLRVYLAQLRRKLEDDPANPKHLITEAGMGYRFVV 226 >UniRef50_A5N881 KdpE n=41 Tax=Bacteria RepID=A5N881_CLOK5 Length = 238 Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 111/225 (49%), Positives = 155/225 (68%), Gaps = 5/225 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VED++AIR+ + T LE G R AET +LEA +R+PD+IILDLGLPD DG+E Sbjct: 6 ILVVEDDKAIRKLITTTLETQGYRYHTAETGGASILEAVSRQPDIIILDLGLPDMDGVEI 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---HS 120 I+ +R WS VP+IV+SARSE+ DKI +LDAGADDYL+KPF + EL ARLRV+LRR S Sbjct: 66 IKKVRTWSNVPIIVVSARSEDRDKIDSLDAGADDYLTKPFSVEELLARLRVSLRRIRYDS 125 Query: 121 ATTAPDPLVKF-SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 D + S + +D A + +EVHLTPIE++L+ +L N GKVLT +L++ Sbjct: 126 KKLLKDAAIFINSGLKIDYEAGCVWLDGDEVHLTPIEYKLICLLAKNVGKVLTHNFILHE 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +WG N LR++M LR+K+E++P++P++ T GIGYR + Sbjct: 186 IWG-NYSNDISALRVFMATLRKKIEKEPSKPKYIQTHIGIGYRML 229 >UniRef50_B5EH76 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=B5EH76_GEOBB Length = 246 Score = 220 bits (560), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 111/223 (49%), Positives = 156/223 (69%), Gaps = 1/223 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +L+V+DE A+ RFLR AL R++EA+ L AA +PD+I+ DLGLPD DG Sbjct: 22 LPRLLMVDDELAVLRFLRAALNTGEFRLYEAQNGHAALAAAAAVRPDIILQDLGLPDMDG 81 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E I+ +R+WS VP+IVLS R + DK+ ALDAGADDYL KPF + ELQAR+RV+LRR S Sbjct: 82 VEVIKRIREWSQVPIIVLSVRDSDDDKVGALDAGADDYLIKPFSVAELQARIRVSLRR-S 140 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 AP+P+ + +++ VDLA R + +EV +TP E+ LL +L+ +AG+VLT Q+L Q+ Sbjct: 141 LQQAPEPVYRCNELEVDLALRRVLLSGKEVQVTPTEYELLRLLVTHAGRVLTHSQILKQI 200 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG VE + LR+ + +LRQK+E DP+RP + TE G+GYR Sbjct: 201 WGVAYVEQQNVLRVNIRNLRQKIEPDPSRPFYITTEVGVGYRL 243 >UniRef50_Q39SW2 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=Q39SW2_GEOMG Length = 233 Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 112/223 (50%), Positives = 149/223 (66%), Gaps = 1/223 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +LIV+DE AIRRFL TAL+ + +AE L A PD+I+LDLGLPD DG Sbjct: 7 LPRILIVDDELAIRRFLCTALDTGEFSLHQAENGHTALAAAVATMPDVILLDLGLPDMDG 66 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E IR +R+WS VP+IVLS R E DK+AALDAGADDYL+KPFG+ EL A R + Sbjct: 67 VEVIRRIREWSQVPIIVLSVREREDDKVAALDAGADDYLTKPFGVAEL-VARIRAALRRA 125 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P+P+ + D+ VDLA R + E LTP E+ LL +L+ +AGKVLT Q+L Q+ Sbjct: 126 LQQVPEPIFRSGDLEVDLARRRVTVDGSESQLTPTEYELLRLLVVHAGKVLTHSQILRQI 185 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + +E H LR+ + +LR+K+E DP+RPRH +TE G+GYR Sbjct: 186 WGVSHLEQPHVLRVNISNLRRKIEMDPSRPRHILTEPGVGYRL 228 >UniRef50_A9KJX4 Two component transcriptional regulator, winged helix family n=22 Tax=Bacteria RepID=A9KJX4_CLOPH Length = 245 Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 101/227 (44%), Positives = 150/227 (66%), Gaps = 4/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +LI+EDEQ I F+ T L RV ++ T GL + PDLI+LDLGLPD DG+ Sbjct: 4 TTILIIEDEQNICNFIATNLNAYDYRVLKSFTGAEGLSIITSHCPDLILLDLGLPDIDGM 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 E I +R WS +P+IV+SAR++E +K+ ALD GADDY++KPFG EL AR+R ALR + Sbjct: 64 EIISKIRSWSTIPIIVISARTQEKEKVQALDLGADDYITKPFGTSELLARIRTALRHNAS 123 Query: 120 --SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 S P + + D +D ++ G ++VHLT IEF+L+++L NN+G+V+T ++ Sbjct: 124 LESGKNFPPSIFRAKDFVIDFNKHIVMVGGKDVHLTQIEFKLVSLLANNSGRVMTYDSII 183 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++WGP A ++ LR+ M ++R+K+E +PA P++ TE GIGYR + Sbjct: 184 TKIWGPYADRNNQILRVNMANIRRKIEANPADPQYIFTEVGIGYRMI 230 >UniRef50_D1VGE4 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VGE4_9ACTO Length = 271 Score = 215 bits (547), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 127/270 (47%), Positives = 159/270 (58%), Gaps = 48/270 (17%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT VLIV+DE I R +R L G V A+T L AA +PD++ILDLGLPD DG Sbjct: 1 MTRVLIVDDEPQILRAMRINLRARGYEVVVADTGATALTAAAETRPDIVILDLGLPDLDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E I LR W+ VP++VLS R++ DK+ ALDAGADDY++KPFGI EL ARLR RR Sbjct: 61 VEVIHGLRGWTRVPIVVLSGRADSRDKVGALDAGADDYITKPFGIDELLARLRAVARRTG 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHR---------GE------------------------ 147 +A P+V+F VTVDLAA + R GE Sbjct: 121 EQSA-SPIVRFGRVTVDLAAHRVTRSATPAAGALGEATPSERSRLEPAAEAATGAGAAGH 179 Query: 148 --------------EEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLR 193 EE+HLT E+ LL VLL++ GK++TQRQLL +VWG N +HYLR Sbjct: 180 PDNGVPAESAAEPVEEIHLTKTEWGLLKVLLSHPGKLVTQRQLLTEVWGANYGSETHYLR 239 Query: 194 IYMGHLRQKLEQDPARPRHFITETGIGYRF 223 Y+ LRQKLE+DPARPRH +T+ G+GYRF Sbjct: 240 TYLNRLRQKLEEDPARPRHLLTDPGMGYRF 269 >UniRef50_Q6MM81 Two-component response regulator KdpE n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MM81_BDEBA Length = 230 Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 105/224 (46%), Positives = 147/224 (65%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + VL+++DE +IR+ LR +LE + +V EA + + GL AA+ +PDL++LDLGLPD G Sbjct: 5 LKKVLVIDDEASIRKLLRVSLEANAYQVEEAPSGRDGLAAAASLRPDLVLLDLGLPDMTG 64 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + + +LR WS VPVIVL+ + ++DKIAALD GADDY++KPF + EL R+RVALR Sbjct: 65 LHVLSELRSWSKVPVIVLTVQDSDNDKIAALDGGADDYITKPFSVPELLVRMRVALRHSP 124 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 A + + VD+ + E V LT EF +L VL+ N KV+T R LLN+V Sbjct: 125 QNAAEKTEMVSGPLKVDVPGHTVTVEGELVKLTATEFNILKVLIKNKDKVVTHRMLLNEV 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WGPN+VEH+HYLR+Y+G LR+KL +TE G+GYR + Sbjct: 185 WGPNSVEHTHYLRVYVGGLRKKLHIREELAEIIVTEAGVGYRLL 228 >UniRef50_B2UQC6 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiaceae RepID=B2UQC6_AKKM8 Length = 232 Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 107/223 (47%), Positives = 151/223 (67%), Gaps = 1/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 ++LI++DE+ IRR L L G G V E E Q GL E A ++PD IILDLGLPD +G+ Sbjct: 6 ADILIIDDERQIRRLLNLTLTGAGYHVRECENGQLGLSETALKRPDAIILDLGLPDINGL 65 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E ++ LR+W+ VP+++L+A E +K+ ALDAGADDYL+KPF EL ARLRV LRR+ Sbjct: 66 EVLKQLREWTQVPILILTAWDREDEKVDALDAGADDYLTKPFSGRELLARLRVMLRRNRP 125 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 P + + + VDL++R + +G+EE+HLT E+ +L +LL + GKV+T RQLL ++W Sbjct: 126 DREPS-VFRLGPIVVDLSSRRVEKGKEEIHLTSKEYGILRLLLLHQGKVMTHRQLLREIW 184 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 GP E +HYLR+++ HLRQKL R E+G+GYR + Sbjct: 185 GPQHEEDTHYLRVHIAHLRQKLGDSDPENRIIRAESGLGYRIV 227 >UniRef50_B3E0R0 DNA-binding response regulator KdpE (REC-wHTH domains) n=8 Tax=Bacteria RepID=B3E0R0_METI4 Length = 240 Score = 208 bits (530), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 108/223 (48%), Positives = 155/223 (69%), Gaps = 1/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +VL+++DE I + L+ LE G RVF A T + G+LE A R+P++IILDL LPD +G E Sbjct: 10 SVLVIDDEPQILKLLKLILESKGYRVFLASTAKEGILETAQRRPNIIILDLLLPDMNGTE 69 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 I+ +R+WS VP++VLSA +E +K+ ALD+GADDYL+KPFG EL AR+RV LRR Sbjct: 70 VIQRIREWSQVPILVLSAVDQEREKVQALDSGADDYLTKPFGEEELMARIRVLLRRLQP- 128 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 A + + + VDL R + ++E+ LT E+ +L +L+ +AGKVLT RQ+L +VWG Sbjct: 129 QADLQVFRTGGLEVDLVNRRVFFQKKEIRLTSTEYGILRLLVRHAGKVLTHRQILQEVWG 188 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 P V+ HYLR+YM LR+K+E++ +P+ +TE GIGYR M+ Sbjct: 189 PRGVDQVHYLRVYMARLREKIEENSLQPKLLLTEPGIGYRLMI 231 >UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteobacteria RepID=A8HY28_AZOC5 Length = 228 Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 111/221 (50%), Positives = 145/221 (65%), Gaps = 1/221 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+V+DE AI RFL AL G V A+ L AT PD ++LDLGLPD DG E Sbjct: 6 ILVVDDEPAIHRFLSPALTAAGYGVARADDAAGALRAIATHPPDAVLLDLGLPDMDGKEV 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR-RHSAT 122 I +RQ+S VP+IVLSAR E++KI ALD GADD+++KPFG+GEL AR+R ALR R T Sbjct: 66 IGRVRQFSQVPIIVLSARDREAEKIEALDLGADDFVNKPFGVGELMARIRAALRQRGGDT 125 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 A D ++K + +D + R +E+ LTP EF LL L + G+VLT RQ+L VWG Sbjct: 126 HAADVVLKVGPLEIDRPRHRVTRDGQEIKLTPKEFELLVYLARHPGRVLTHRQILGAVWG 185 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 P ++ + YLR+Y+G LRQ+LE +PA P +TE GIGYR Sbjct: 186 PAHLDDTQYLRVYVGQLRQRLEVEPATPTLILTEPGIGYRM 226 >UniRef50_B0RVC3 Two-component system response regulator n=129 Tax=Bacteria RepID=B0RVC3_XANCB Length = 271 Score = 206 bits (524), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 151/222 (68%), Gaps = 1/222 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLI++DE IRRFL +L G RV +A T + GL A + +L++LD+GLPD DG E Sbjct: 46 VLIIDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLATLAGQGAELVVLDIGLPDRDGHEV 105 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA-T 122 +R++RQWS+VPVI+L+ R+ E++K+AALDAGA+DY++KPFG+ EL AR+R LR+ A Sbjct: 106 LREIRQWSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGAGN 165 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 T + + + + L R + E V L+ E+ LLA+L +AG+V+TQ QLL +VWG Sbjct: 166 TVEESVFDDGRLHIHLGLREVTLDGEAVPLSRKEYALLALLFKHAGRVVTQPQLLREVWG 225 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 P E +HYLRI +G LRQKL D A P + +TE G+G RF+ Sbjct: 226 PTHEEDTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVGLRFI 267 >UniRef50_Q72TM3 Response regulator n=2 Tax=Leptospira interrogans RepID=Q72TM3_LEPIC Length = 227 Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 99/222 (44%), Positives = 143/222 (64%), Gaps = 1/222 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+ +D+ IR+ +R +L V E+ T+Q +L+AA PDLI+LDL PDG+GI Sbjct: 5 ILVADDDDRIRKMIRISLNASHYEVIESATIQETILKAAKNSPDLILLDLQFPDGNGITA 64 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +R++R WS PVIVLS + + +KI+ LD GADDY++KPF +GEL AR+RVALR + Sbjct: 65 LREIRSWSETPVIVLSVLASDPEKISLLDGGADDYITKPFSMGELLARIRVALRNKTQDP 124 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 P+ ++ VDL+ R + VHLTP E+ L L+ +AGKVLTQ Q++ VWGP Sbjct: 125 G-SPIFISGNLYVDLSNRNVKVSGITVHLTPTEYIFLTFLIQHAGKVLTQEQIIRHVWGP 183 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 A S LR+++ LR+K+E DP+ P +TE G+GYR + Sbjct: 184 FAKNESGSLRVHVASLRKKIELDPSSPELLLTEPGVGYRLAI 225 >UniRef50_Q2W608 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W608_MAGSA Length = 228 Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 104/223 (46%), Positives = 143/223 (64%), Gaps = 1/223 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M+ +L+V+DE IR+FLR +L +G V EAE+ GL PDL+ILDLGLPD DG Sbjct: 1 MSRILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAACPDLLILDLGLPDMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E I +RQ +P+IVLS R++E DK+ ALD GA+DY++KPFG+ EL AR+R LR H Sbjct: 61 QEIISAVRQDCDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLRPHL 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +V+ + +DL V+ + E+HL+ E+ LLA + VLT + +L V Sbjct: 121 PKEGGQ-VVESGSLKIDLDRLVVRKAGSEIHLSRKEWDLLAFFARHPDHVLTHKHILKGV 179 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WGP V+ + YLR+Y+ LRQKLE DPARPR +T+ G+GYR Sbjct: 180 WGPAHVDDTAYLRVYVNQLRQKLEDDPARPRLIVTDPGVGYRL 222 >UniRef50_B0SY74 Two component transcriptional regulator, winged helix family n=2 Tax=Caulobacter sp. K31 RepID=B0SY74_CAUSK Length = 235 Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 104/221 (47%), Positives = 140/221 (63%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LI++DE I RFL A++ G A++ Q GL A PD ++LDLGLPD DG + Sbjct: 13 ILIIDDEPQIHRFLAPAMDAAGYEPLRADSGQEGLRGIALWSPDAVVLDLGLPDMDGKDV 72 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + R + PVI+LSAR E++KI ALD GA+DYL KPFG+GEL ARLRVALR+ Sbjct: 73 LEKARAFYDGPVIILSARDREAEKIQALDLGANDYLGKPFGVGELLARLRVALRQRGHAQ 132 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 P ++ V +DL ++ R V ++P E+ +LA L GKVLT + LL VWGP Sbjct: 133 GPLAPIRAGAVEIDLEKHLVTRDGGVVKISPREYEVLARLAQARGKVLTHKDLLTAVWGP 192 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + + YLR+++G LRQKLE DP+ PR +TE GIGYRF+ Sbjct: 193 AHAQDTQYLRVFVGQLRQKLEADPSTPRMILTEPGIGYRFI 233 >UniRef50_Q30T71 Two component transcriptional regulator, winged helix family n=2 Tax=Campylobacterales RepID=Q30T71_SULDN Length = 229 Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 96/227 (42%), Positives = 141/227 (62%), Gaps = 2/227 (0%) Query: 1 MTNVLI--VEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M N LI +ED+ ++++ L + + + ++ T DL+++DLGLPDG Sbjct: 1 MKNYLIQIIEDDSSVKKLLEITFREHNLNYISCDNKKNAMMLFLTHSSDLLLVDLGLPDG 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 DG EFIR++R+ S V ++VLSAR +E + +AALDAGADDY++KPF + EL AR+R LRR Sbjct: 61 DGKEFIREIREISKVTIVVLSARDDEKEIVAALDAGADDYITKPFSVNELLARIRANLRR 120 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + + +++ +D+A+R I E++ LTPIEF LL L NA K LT +Q+L Sbjct: 121 SISGENISSKITCAELEMDIASRDIFFKNEQLKLTPIEFELLKYFLLNANKTLTHKQILK 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +VWG YLR Y+ LR+K+EQ+ RP + TE+GIGYRF Sbjct: 181 EVWGVGYQSEMQYLRTYVNTLRKKIEQNSTRPTYIKTESGIGYRFCC 227 >UniRef50_C1ABQ2 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABQ2_GEMAT Length = 233 Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 112/225 (49%), Positives = 148/225 (65%), Gaps = 4/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 + +L+V+DE AIR +R A+E D FEA GL A +P LI+LDLGLPD DG+ Sbjct: 6 SAILVVDDEPAIRSIIRAAVEDDAGIAFEAANAATGLEIARRERPALIVLDLGLPDQDGV 65 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LR+WSA P++VLSAR +++K ALDAGADDYL+KPF ELQAR+R LRR Sbjct: 66 DVCHALREWSAAPILVLSARHSDTEKARALDAGADDYLTKPFSTIELQARMRALLRRARM 125 Query: 122 TTAPD---PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 P PLV+ DV +DLA R + + VHLTP E+ LL L+ +AG+ +T +QL + Sbjct: 126 APVPGGDAPLVR-GDVVIDLANRQVTQHGMPVHLTPTEWDLLRALVTHAGRTMTHKQLFD 184 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + YLR+Y+GHLR+KLE DP RP +TE G+GYRF Sbjct: 185 AVWGRHHGDAQQYLRVYIGHLRRKLEVDPLRPTLIVTEGGVGYRF 229 >UniRef50_B9Y2I0 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B9Y2I0_9FIRM Length = 239 Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 98/223 (43%), Positives = 146/223 (65%), Gaps = 2/223 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LIVED+ IR F+ L +G A T Q + A DL++LDLGLPD DG++ Sbjct: 8 ILIVEDDPQIRNFISYVLSAEGFASDNAATAQSAMTLLAANVYDLMLLDLGLPDYDGMDV 67 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR--HSA 121 IR +R+WS +P++V+SAR ++ +K ALDAGADDYL+KPF EL AR+RVA+R Sbjct: 68 IRKVREWSEIPILVVSARDQDQEKAQALDAGADDYLTKPFSTTELMARIRVAIRHAFRQN 127 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T A ++ ++++DL R + + +HLTP+E+ LL++ L N+GKVLT R L++ +W Sbjct: 128 TAAVQKVLTVRELSLDLEKRQVTLRGQPLHLTPMEYNLLSLFLRNSGKVLTTRYLISAIW 187 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 G E + LR M LR+K+E++PA+PR+ +TE G+GYR + Sbjct: 188 GSGYGEDTQALRALMAGLRRKIEENPAKPRYIVTEIGVGYRLV 230 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 199 bits (505), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 101/223 (45%), Positives = 148/223 (66%), Gaps = 2/223 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+DE + F+R LE +GMRV A + + + PD+++LD+ +P DG E Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-SAT 122 +R +R +S VPVI+L+A+ EE D++ L+ GADDY+ KPF EL +R+R LRRH + Sbjct: 69 LRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQP 128 Query: 123 TAPDPLVKFSD-VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 P LVK D +++D A R + + V+L P E+RLL L+ NAG VLT LL++VW Sbjct: 129 PIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKVW 188 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 GP + SHYLR+Y+ +LRQK+E+DP+ PR+ +TE G+GYRF+ Sbjct: 189 GPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_B8IF93 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=B8IF93_METNO Length = 229 Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 105/222 (47%), Positives = 147/222 (66%), Gaps = 3/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+++DE IR+ LR L G V EA T + A DL+ILDLGLPD G + Sbjct: 6 RILVIDDEPPIRKLLRMGLSSQGYEVAEAGTGRAARQALAQAAVDLVILDLGLPDIGGHD 65 Query: 63 FIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R +R+ + ++PVIVLS+R +E+ K+ ALD GADDY++KPFG+ EL AR+R ALR A Sbjct: 66 LLRLIREGFPSLPVIVLSSRGDETGKVEALDLGADDYVTKPFGMNELLARMRTALRHQLA 125 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 P+ + D+TVDL R++ G+ EV L+P E+ +L +L+ +AGKVLT LL ++W Sbjct: 126 QQGERPVFRVEDLTVDLVRRLVRVGDREVKLSPKEYDMLRLLVQHAGKVLTHAFLLREIW 185 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G AV YLR+Y+ LRQK+E DP RPR+ +TETG+GYR Sbjct: 186 G--AVADPQYLRVYVRQLRQKIEPDPERPRYILTETGVGYRL 225 >UniRef50_A9AXT6 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXT6_HERA2 Length = 231 Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 104/223 (46%), Positives = 136/223 (60%), Gaps = 2/223 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+ EDE +R F+R L+ G V EA L T +P LIILDL +P G E Sbjct: 8 VLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRLTGFEV 67 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + +R+ S VP+IVL+A E DK+ A D GADDYL KPFG+ EL AR+R LRR + Sbjct: 68 CQRIREQSIVPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRRSQWSV 127 Query: 124 APDP--LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 P ++ ++ +DL A + R +V LTP EF LLA L+ + KVLT R LL VW Sbjct: 128 QPQASGTKRYGELEIDLEAHSVRRAGLDVRLTPTEFALLAYLITHPNKVLTHRMLLQHVW 187 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 G + + YLR+Y+G LR+KLE DP+ PRH +TE GIGYRF+ Sbjct: 188 GDQYRDEAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGYRFV 230 >UniRef50_C9XT65 Two-component response regulator n=18 Tax=Bacteria RepID=C9XT65_CLODC Length = 232 Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/224 (44%), Positives = 144/224 (64%), Gaps = 4/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VED++ IR+F+ TAL V EA T + G+ A + PD+++LDLGL D DGIE Sbjct: 6 ILLVEDDKTIRKFISTALLTQDYDVKEAITGKEGISIAVSYSPDVVLLDLGLEDMDGIEV 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 I+ +RQ+S +P+IV+SAR ++ DK+ DAGADDYL+KPF I EL AR+RVA R Sbjct: 66 IKAIRQFSNIPIIVVSAREQDRDKVEVFDAGADDYLTKPFSIVELLARVRVAFRHSQVEA 125 Query: 124 APDPLVKFS----DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 VK + + +D R + + EVHLTPIE+ +L++L + GKVLT ++ + Sbjct: 126 QQKDDVKSTFEVDKLLIDFDKRKVIVDDVEVHLTPIEYNILSLLAKHHGKVLTHNFIIKE 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +WG + LR++M LR+K+E+ PA PR+ ITE G+GYR Sbjct: 186 IWGSVIGNETKSLRVFMATLRRKIEKQPANPRYIITEVGVGYRL 229 >UniRef50_Q2J7U7 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=Q2J7U7_FRASC Length = 272 Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 111/250 (44%), Positives = 148/250 (59%), Gaps = 29/250 (11%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +L VEDE + R +R L G V A + L EAA+ PDL+ILDLGLPD DG Sbjct: 23 MTRLLFVEDEPQLLRAMRITLRARGFEVRTALDGRHALSEAASCPPDLVILDLGLPDMDG 82 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E I+ LR W+ VP+IVLS R+ DK+AALDAGADDY++KPF I EL AR+R RR Sbjct: 83 VEVIQGLRAWTGVPIIVLSGRASGHDKVAALDAGADDYVTKPFSIDELLARVRAVTRR-- 140 Query: 121 ATTAPD-PLVKFSDVTVDLAARVIHR-----------------------GEEEV---HLT 153 AT+A +V +DL + I GE++ LT Sbjct: 141 ATSAESVTVVDLGRYRIDLGEKRISSRDSADADADADAGSGHEDPSATGGEDKPDGPRLT 200 Query: 154 PIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHF 213 P E+RLL L+ + GK+++ +QL++QVWGP + S LR+Y+ LR+KLE DP RPR+ Sbjct: 201 PTEWRLLEALVRHPGKLVSHQQLISQVWGPGVADDSSSLRLYINKLRRKLEPDPTRPRYL 260 Query: 214 ITETGIGYRF 223 TE G+GYR+ Sbjct: 261 TTEPGLGYRY 270 >UniRef50_C5SPS9 Two component transcriptional regulator, winged helix family n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SPS9_9CAUL Length = 235 Score = 193 bits (490), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 96/222 (43%), Positives = 141/222 (63%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DE IR+ L L+ +V E+E ++ + +A+ KPDLI+LDLGLPD DG Sbjct: 6 NTILVVDDEDEIRKMLNIFLDVADFKVVESENGKQAIRLSASVKPDLILLDLGLPDIDGK 65 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E I+ +RQWS VP+IVL+ARSE+ D AL+ GADDY++KPF L AR+ LR+ Sbjct: 66 EVIQTIRQWSNVPIIVLTARSEDMDAAPALNLGADDYVTKPFSAEVLLARINANLRKSVV 125 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 +P V + +DL + E++V TP E+ LL L N G++LT +Q+L +VW Sbjct: 126 REVGEPDVVNGPIRMDLVRHEVFIDEKKVPFTPKEYDLLRFFLVNRGRMLTHKQILKEVW 185 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 GP V+ + YLR+Y+G +R+KLE P + ++E+GIGYR Sbjct: 186 GPAHVDDTQYLRVYIGQVREKLETKPGLSKSIVSESGIGYRM 227 >UniRef50_A8L9L0 Two component transcriptional regulator, winged helix family n=11 Tax=Actinomycetales RepID=A8L9L0_FRASN Length = 236 Score = 192 bits (488), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 108/223 (48%), Positives = 138/223 (61%), Gaps = 4/223 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL V+DE + R +R L G V A L EAA PD+++LDLGLPD DGIE Sbjct: 13 VLFVDDEPQLLRAMRITLRARGYEVRTAVDGGHALTEAAAHPPDIVLLDLGLPDMDGIEV 72 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 I LR W+ VP+IVLS R+ +KIA+LDAGADDY++KPF + EL AR+R RR A Sbjct: 73 IHGLRGWTGVPIIVLSGRTAGQEKIASLDAGADDYITKPFSVEELLARMRAVARRAPAAE 132 Query: 124 APDPLVKFSDVTVDLAARVI---HRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P D VD AA+ + G VHLTP E+RLL L+ N GK+++ R L++QV Sbjct: 133 T-GPAADVGDYRVDFAAKAVTAQAEGGAAVHLTPTEWRLLEALVRNPGKLVSSRALVSQV 191 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WGP + LR+Y+ LR+KLE DP RPRH TE G+GYR+ Sbjct: 192 WGPAYAADTSSLRLYINRLRRKLEPDPTRPRHLTTEPGMGYRY 234 >UniRef50_D1B309 Response regulator receiver n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B309_SULD5 Length = 233 Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 101/223 (45%), Positives = 134/223 (60%), Gaps = 1/223 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVED+ AI + L +L G + A L + + P LIILDLGLPDGDG Sbjct: 1 MELILIVEDDDAIAKLLTISLHEYGFKTKHAYDLATAKRDILSHNPLLIILDLGLPDGDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 I +R+ S P+IVLSAR++E + IAALD GADDY++KPF EL AR+R LRR Sbjct: 61 KSLITKVRKQSKTPIIVLSARNDEKEIIAALDLGADDYVTKPFSTSELLARVRSTLRRVQ 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ATTA D ++ D+T+D + + + LTP E+ LL L+ NA KVL +Q+L +V Sbjct: 121 ATTARD-MLTCKDLTIDFTKKEVQLKGALLKLTPTEYTLLRYLMQNANKVLPHQQILKEV 179 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG YLR Y+ LR+K+E RP + TE+ IGYRF Sbjct: 180 WGVGYQNEMQYLRTYINSLRKKIEDSSTRPEYITTESSIGYRF 222 >UniRef50_Q2GBD9 Two component transcriptional regulator, winged helix family n=2 Tax=Sphingomonadales RepID=Q2GBD9_NOVAD Length = 229 Score = 190 bits (482), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 144/223 (64%), Gaps = 1/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +VL+V+DE A+ L+ L+ G V A + PD+++LDLGLPD DG E Sbjct: 4 HVLLVDDEPALITVLQPVLKAAGCTVTVATDGNAAISGVIAHDPDVVLLDLGLPDMDGKE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 IR +R+ S VP+IV+SAR +E++KIAALD GADDY++KPF IGEL AR+RVA+RR ++ Sbjct: 64 VIRVIRESSQVPIIVISARHQEAEKIAALDEGADDYVNKPFEIGELMARIRVAVRRATSQ 123 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 A + + + +D A R + E + L+P E+ LL L N G+V+T ++LL WG Sbjct: 124 PANAAIFEGGPLRIDFAKREVELMGEPIKLSPKEYMLLHALARNVGQVVTHKRLLAAGWG 183 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 N+ YLR+YMG LRQKLE++P+ P +TE G+GYR ++ Sbjct: 184 -NSTADLQYLRVYMGLLRQKLEENPSEPELIVTEPGLGYRLIV 225 >UniRef50_B4RHL6 Response regulator(With CheY-like receiver domain and winged-helix DNA-binding domain) n=4 Tax=cellular organisms RepID=B4RHL6_PHEZH Length = 237 Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 103/220 (46%), Positives = 139/220 (63%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+V+DE I R L AL+ G V A T + L A D IILDLGLPD DG E Sbjct: 6 LLLVDDEPQIVRALLPALQAAGYAVEVAGTGEAALTCLAAEPCDAIILDLGLPDMDGKEV 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 I +R+WS P++VLSAR ES+KIAALDAGADD+++KP G+GEL ARLR +LR Sbjct: 66 IARIREWSEAPILVLSARDLESEKIAALDAGADDFVNKPVGVGELLARLRASLRGRERRF 125 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 A + + D+ +D A R + EEV LTP E+ LL +L +AG+ +T RQ++ VWG Sbjct: 126 ASQAMFRSGDLAIDFARRRVTVQGEEVRLTPREYDLLRILARHAGRPVTHRQVIAAVWGA 185 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 A + ++R+ + LRQKLE +P+ PR +TE G+GYR Sbjct: 186 GAQVDAQFVRVLVAQLRQKLEAEPSAPRLLMTEPGLGYRL 225 >UniRef50_C2BL33 Response regulator n=2 Tax=Corynebacterium RepID=C2BL33_9CORY Length = 237 Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 141/227 (62%), Gaps = 6/227 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++IV+D+ + L + G V+ A T GL + +PD++ILD+GLPD DG E Sbjct: 7 TIVIVDDDPRLLTTLSINFKARGYEVYSASTGAEGLQVVSQHQPDVVILDMGLPDMDGRE 66 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R WSA+PV++L+ARS+ +ALD GADDY++KPF + EL AR+RVAL RH + Sbjct: 67 VLDGIRGWSAIPVLILTARSDPLFSASALDRGADDYVTKPFSMEELLARVRVAL-RHGSP 125 Query: 123 TAPDP-----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 P +V+ DV +D+ I + + +HLTP E+ +L LL G ++ + LL Sbjct: 126 QQPSAQREATMVRAGDVLIDVPRHSITKAGKPLHLTPTEWGVLTTLLRAHGGLVRKEDLL 185 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++WGP SHYLRIY LR+KLE DP+ P++ +TE G+GYRF+ Sbjct: 186 AEIWGPGFEGQSHYLRIYTSQLRRKLETDPSNPQYLLTEPGLGYRFI 232 >UniRef50_B8J1F3 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J1F3_DESDA Length = 247 Score = 186 bits (471), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 108/224 (48%), Positives = 144/224 (64%), Gaps = 4/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L++ED++AIR + ALE M A T + + EA+ PD+I+LDLGLPD DG + Sbjct: 16 ILVIEDDKAIRALVTAALESRAMACITAGTGREAIAEASRAGPDVILLDLGLPDMDGTDI 75 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 IR +RQWS VP+IVLSARSE+ DK+AALDAGADDYL+KPF I EL ARLR ALRR Sbjct: 76 IRTVRQWSMVPIIVLSARSEDDDKVAALDAGADDYLTKPFSIDELLARLRAALRRGRYER 135 Query: 124 A-PDPLVKFSD---VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 PD F + + +D AA +E+HL P+E++LL +L NAGKVLT + +L Sbjct: 136 GNPDRDASFFENGPLRIDFAAGSASVNGQEIHLAPMEYKLLCLLARNAGKVLTHKTILQA 195 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + ++ LR++M LR+KLE R + T G+GYR Sbjct: 196 VWGSSLPQNLPSLRVFMATLRKKLENAAPRCDYIHTHVGVGYRM 239 >UniRef50_A4WZ32 Transposase and inactivated derivatives-like protein n=5 Tax=Alphaproteobacteria RepID=A4WZ32_RHOS5 Length = 229 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 104/221 (47%), Positives = 133/221 (60%), Gaps = 1/221 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++LIV+DE IRR LR A+E G EA+ L P L++LDLGLPD DG+E Sbjct: 4 HILIVDDEMPIRRLLRVAIERSGYATIEADCGAAALDALRRSVPKLVLLDLGLPDRDGLE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 I R+ VP+IVL+AR S+K+AALD GADDY++KPF EL AR+R LRR + Sbjct: 64 LIGAFRE-KLVPIIVLTAREASSEKVAALDLGADDYVTKPFDSEELMARIRSCLRRADQS 122 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 + VT+DL A E LTP EF LLAVL ++ GKVLT LL +VWG Sbjct: 123 HGHLRKLTVGPVTIDLDAHGAWMNGAEAKLTPKEFTLLAVLASHPGKVLTHTHLLREVWG 182 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 P +H YLR+ + LR+KLE+DP+ PR E G+GYR Sbjct: 183 PAHTDHVEYLRVTVRSLRKKLEEDPSAPRLIQNEPGVGYRL 223 >UniRef50_UPI000185BED4 KDP operon transcriptional regulatory protein KdpE n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BED4 Length = 247 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 143/226 (63%), Gaps = 3/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIVED+ A+ R + +L+ G A+T R L + KPD ++LDLGLPD G+E Sbjct: 19 KILIVEDDVAMARTVLVSLKARGYEPRVAQTATRALAAVSEWKPDAVLLDLGLPDVSGLE 78 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R LR+WS +PV+++SAR +E+ KI AL+ GADDY++KPF +GEL ARLR +RR S Sbjct: 79 VLRSLRRWSDIPVLIVSARHDEAGKINALNEGADDYVTKPFSMGELLARLRSTMRRASKV 138 Query: 123 TAPDPLVKFS---DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + S + VDLA R + +E VHLTP E+ +L L+ + G+++T+ +LL Sbjct: 139 VVEEVPKVASADGHLMVDLAKRQVLVADELVHLTPREWDILVYLVQHRGELVTKLELLKA 198 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWG + ++YLR+Y+ LR K+E A ++ TE G+GYR +L Sbjct: 199 VWGDQYEKETNYLRVYISQLRHKIEPQQAHNKYLRTEVGVGYRMVL 244 >UniRef50_C2JNW2 Response regulator n=9 Tax=Enterococcus RepID=C2JNW2_ENTFA Length = 234 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 141/221 (63%), Gaps = 1/221 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++L++ED+ I F+ L + ++ A T L T DL++LDLGLPD DGI+ Sbjct: 9 SILLIEDDPNITDFMEVVLGQERYQLTIASTGMEALTAFQTTSFDLVLLDLGLPDIDGID 68 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 ++ LR+ +P+I++SAR+ E +K+ ALD GADDY++KPFG EL AR+R ALR + Sbjct: 69 LLKILRKRMHLPIIIISARNNEEEKVKALDLGADDYVTKPFGTNELLARIRTALRHQNVQ 128 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 T +V+ D+ +D +++++ +E+HLT E+R+LA++ GKV+ + L+ +VWG Sbjct: 129 TESLTVVENKDLKIDFEKQLVYKKGQEIHLTKNEYRILALMFRQLGKVVAYQTLMTKVWG 188 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 P + S LR+ M ++R+K+E + +P + ITE G+GYR Sbjct: 189 PYS-NDSQTLRVNMSNIRKKIESNTLKPEYLITEIGVGYRL 228 >UniRef50_A9QSD4 Osmosensitive K+ channel response regulator n=22 Tax=Bacteria RepID=A9QSD4_LACLK Length = 236 Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 7/227 (3%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LI ED+ +I + L +E + + + L E +++PDL+ILDLGLPD DG E Sbjct: 8 ILICEDDLSINKLLSLTMEVEDYNYVAVQNGKEALREIISQRPDLLILDLGLPDMDGKEI 67 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 I +R +S +P+IV+SAR E++DKIAALDAGADDYL+KPF EL ARLRV+LRR + Sbjct: 68 ISKVRGFSQLPIIVVSARGEDADKIAALDAGADDYLTKPFSTDELLARLRVSLRRAKFSG 127 Query: 124 APDPLV----KFSD--VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 L+ F++ + ++ ++ E+E+HLTPIE++LL +L N +V+T L+ Sbjct: 128 NNQNLLTEVTTFTNGWLKINYLSKCAFVNEKEIHLTPIEYKLLCLLAENLDRVMTYNYLV 187 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++WG + S LR++ LR+K+E D P+ T G+GYR + Sbjct: 188 KEIWGYYEEDFSA-LRVFANTLRKKIELDSNYPKMIQTHIGVGYRMI 233 >UniRef50_C1AAN0 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAN0_GEMAT Length = 238 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 141/224 (62%), Gaps = 4/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++LIVED++ +R LR L+ V EA T Q GL A+ + D IILDLGLPD G+ Sbjct: 7 HLLIVEDDEHVRHALRETLQEYAADVSEAATAQEGLTIASRQTLDAIILDLGLPDSTGLA 66 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + LR ++ VP++VLSA +E+ K+A L+AGADDY++KPF EL AR+ +RR S Sbjct: 67 LCQSLRAFTQVPILVLSAMHDENSKVALLNAGADDYVTKPFSSAELVARIHAHVRRVSDR 126 Query: 123 ---TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 +P L++ DV +DL RV R + + LTP E+ LL VL+ G+ +T RQL Sbjct: 127 RDGISP-VLLRLGDVELDLQQRVATRAGQPLRLTPTEWTLLRVLVAQRGRTMTHRQLFLA 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VW + S +LR+++ HLR+K+E +PA PR +T+ G+GYRF Sbjct: 186 VWNREYGDASLHLRVHLTHLRRKIEANPAEPRFIVTDPGVGYRF 229 >UniRef50_B0T7K3 Two component transcriptional regulator, winged helix family n=9 Tax=Proteobacteria RepID=B0T7K3_CAUSK Length = 393 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/188 (47%), Positives = 123/188 (65%), Gaps = 1/188 (0%) Query: 37 GLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGAD 96 GL PD ++LDLGLPD DG + + R + P+++LSAR E +KIAALD GA+ Sbjct: 205 GLRAIVVLSPDAVVLDLGLPDIDGKDVLARARAFYQGPILILSARDREVEKIAALDNGAN 264 Query: 97 DYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIE 156 DY+ KPFGIGE ARLR ALR+ A P + + +V +DL R++ + E V L+P E Sbjct: 265 DYVEKPFGIGEFLARLRAALRQRGAAM-PSGVHRAGEVEIDLDKRLVRKAGEVVKLSPRE 323 Query: 157 FRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITE 216 + +LA L GK +T ++LL VWGP + + YLR+++G +RQKLE DP+RP+ +TE Sbjct: 324 YEVLARLAQGQGKAMTHKELLVSVWGPAHMHDTQYLRVFVGQVRQKLEADPSRPKIILTE 383 Query: 217 TGIGYRFM 224 GIGYRFM Sbjct: 384 AGIGYRFM 391 >UniRef50_Q1IUD6 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IUD6_ACIBL Length = 232 Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 133/224 (59%), Gaps = 1/224 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +L+V+DEQ I R LRT L G + A + PDL+I D+ +P+ DG Sbjct: 2 IARILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDISMPNMDG 61 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + ++LR S VP+IVLS + +E K+ ALD GADDY++KPF I EL AR+R LRR Sbjct: 62 LALCKELRARSQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRRAP 121 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +++ D +D AA ++ EV LTP EF LL L + GKV+ R LL+ V Sbjct: 122 VAEIA-TILELGDFVIDTAAHLVKVRGTEVRLTPKEFDLLLYLARHPGKVVPHRTLLSSV 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG + E S YLR+++G LR+K+E + + R+ +TE IGYRF+ Sbjct: 181 WGADHAEQSEYLRVFVGQLRKKIEGENSNKRYILTERWIGYRFI 224 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 139/225 (61%), Gaps = 3/225 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+++D++++R + LE +G R +A + G +A T KPDL+++DL LP G Sbjct: 12 MQTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSG 71 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 E + LR A P+IVLSA +E DK+ L+ GADDY+ KPFG EL AR+R LRR Sbjct: 72 TEICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRR- 130 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 A+T ++ FS+V VD RV+ R E++ LTP E+ LL L+N + LT+ +LN Sbjct: 131 -ASTDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNS 189 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VWG ++ + ++ LRQKLE DP P+HF+T G+GYRF+ Sbjct: 190 VWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFI 234 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 176 bits (445), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 97/224 (43%), Positives = 137/224 (61%), Gaps = 3/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++L+VED+ +I L L +G V +A+ + GL A PDL++LD+ LP+ +G E Sbjct: 7 SILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFE 66 Query: 63 FIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 +++LRQ PV+VLSA+ E+DKI L+ GADDY+ KPFG+ EL AR++ LRR Sbjct: 67 VLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYP 126 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 SA P V F DV+VD+AAR + R V LT EF+LLA L + G+ T+ +LL+ Sbjct: 127 SAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSG 186 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + +M LR K E DP PRHF+T G+GYRF Sbjct: 187 AWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRF 230 >UniRef50_A9VZA6 Response regulator receiver n=30 Tax=Alphaproteobacteria RepID=A9VZA6_METEP Length = 248 Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 101/222 (45%), Positives = 137/222 (61%), Gaps = 4/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+++DE IR+ LR L G + EA L PDL+ILDLGLPD G + Sbjct: 4 TILVIDDEPPIRKLLRMGLATQGYAILEAPNAATALEVLGRDSPDLVILDLGLPDMRGHD 63 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R +R +PV+VLS+R +E K+ ALD GADDY++KPFG+ EL ARLR ALR A Sbjct: 64 LLRAIRASHPGLPVVVLSSRDDEGGKVEALDLGADDYVTKPFGMAELLARLRAALRHQLA 123 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 P+ + ++VDL R++ + EV LTP E+ L +++ +AGKVLT QL+N+V Sbjct: 124 ARGERPVFRVDGLSVDLVRRIVKVDDVEVKLTPREYAFLRIMVLHAGKVLTHAQLMNEV- 182 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + YLR+YM LRQKLE DP RPR +TETG+GYR Sbjct: 183 --SVSSDPQYLRVYMRQLRQKLEADPERPRILLTETGVGYRL 222 >UniRef50_B0NK63 Putative uncharacterized protein n=5 Tax=Bacteria RepID=B0NK63_EUBSP Length = 237 Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 91/225 (40%), Positives = 133/225 (59%), Gaps = 4/225 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VEDE IR L LE +G A G + + +PDL+ILDLGLPD DG F Sbjct: 7 ILVVEDEINIRNLLVALLETNGYAAIVAGDYTTGKMMYESHRPDLVILDLGLPDIDGTTF 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR--RHSA 121 I ++R+ S P+IVLSAR++ESDK+ ALD GA+DY++KPF EL AR+R ALR RHS+ Sbjct: 67 INEVRKVSLTPIIVLSARTDESDKVGALDMGANDYVTKPFRSAELVARVRSALRITRHSS 126 Query: 122 TTA--PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 P + + +D AR + E+ LT IE+ ++ VL +AGKV+T ++ + Sbjct: 127 EDGKLPGGTFRSKGLLIDYDARRVFIDNTEIKLTQIEYNIITVLSEHAGKVMTYAAIIKE 186 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +WG N + L++ M ++R+K P + + E G+GYR Sbjct: 187 IWGYNDLNSKKKLQVNMANIRKKFGAKPGKHNYIENELGVGYRMC 231 >UniRef50_C1ACD7 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACD7_GEMAT Length = 240 Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 142/224 (63%), Gaps = 4/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VED+ A+R L L +V A +L + E A P L++LDLGLPDGDG E Sbjct: 14 TLLVVEDDDALRETLAQTLGTMCRQVRTASSLAEAVRECAQVSPQLVLLDLGLPDGDGSE 73 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R LR + VP+IVLS R +E +K+A LDAGADD++SKP G ELQAR+R +RR + + Sbjct: 74 LLRQLRGVTDVPIIVLSGRDDEDEKVAILDAGADDFISKPCGAAELQARVRGQIRRAAIS 133 Query: 123 TAPD--PLVKFSDVTVDL-AARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 A ++ V +DL RV+ RGE + LTP E+ LL L+ +AG+ ++ RQL + Sbjct: 134 HASRAWSVLTVDGVEIDLQQQRVVRRGELQ-RLTPTEWSLLRALVLHAGRPMSPRQLWDI 192 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VW + + ++R+++ HLR+K+E D + PR ITE G+GYRF Sbjct: 193 VWDREFGDFATHVRVHITHLRRKIEPDASMPRLIITEPGVGYRF 236 >UniRef50_C7H2X2 KDP operon transcriptional regulatory protein KdpE n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H2X2_9FIRM Length = 243 Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 131/224 (58%), Gaps = 3/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+VEDE I F+ T LE +G + A T G + PDLIILDLGLPD DG+E Sbjct: 10 VLVVEDEANICSFIETLLETNGYQALVANTCAMGQTLFTSHNPDLIILDLGLPDRDGLEL 69 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 IR +RQ P++VLSAR+ E DKI ALD GA+DY++KPFG GEL AR+R ALR + Sbjct: 70 IRFVRQKFLTPIVVLSARTTEQDKIEALDLGANDYITKPFGTGELLARVRAALRTNRFGV 129 Query: 124 ---APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P L + + ++ R + E+ LT E+ ++A L +AG+V+T ++ + Sbjct: 130 LGGMPGGLFRAQGLEINYERRKVFVDGAEIKLTQTEYNIVAFLSEHAGRVMTYAAIVRAI 189 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG + L++ M ++R+KL P R + + E G+GYR + Sbjct: 190 WGDTDCGSTKKLQVNMANIRKKLGSVPGRNTYILNELGVGYRMI 233 >UniRef50_C2C899 DNA-binding response regulator KdpE n=9 Tax=Vibrionaceae RepID=C2C899_VIBCH Length = 255 Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 139/223 (62%), Gaps = 2/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DE I+ F+R +L +G A++L ++ +P +++LDLGLPDG+GIE Sbjct: 27 KILVVDDEPQIQTFMRISLAAEGFDYVGADSLATAKVQFERVQPHVVVLDLGLPDGEGIE 86 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 F+ +RQ S PV++L+AR +E +KI L+AGA+DYLSKPFGI EL R++V LR + Sbjct: 87 FLSMIRQSSKTPVLILTARDQEEEKIRLLEAGANDYLSKPFGIKELIVRIKVLLRDLVSE 146 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 + +V FS + + + + EV LT EF L +L+ G+++ Q LL +VWG Sbjct: 147 HFSEDIVTFSALKLQKSTHQCWLSDSEVILTKKEFAFLEMLMKTPGQLVKQTDLLREVWG 206 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFI-TETGIGYRFM 224 + +HYLRI + LR+KL D A +H I TE+G+GYR + Sbjct: 207 HSHTADTHYLRILVSQLRKKL-NDSADEQHTIKTESGLGYRLV 248 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 141/226 (62%), Gaps = 2/226 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M+ +L+V+DE A+R LR LE +G V EA +R L A KPDL++LDL +P+ G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 EF+R + S PVIVL+A+ E++DKI L+ GADDY++KPF + EL AR+R LRR Sbjct: 61 YEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T +++ +D+ +D R + G V LTP EF +LA L+ G+V ++ LL++V Sbjct: 121 QTPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRV 180 Query: 181 WGPNAVEHSH-YLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G +A E S + +++ +LR K+E DP P++ T G+GYRF L Sbjct: 181 SG-DAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFAL 225 >UniRef50_Q3ZWF6 DNA-binding response regulator n=1 Tax=Dehalococcoides sp. CBDB1 RepID=Q3ZWF6_DEHSC Length = 233 Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 N+LIV+D+ I +F++ DG V A Q L PD+I+LD+ +P DG+ Sbjct: 4 NNILIVDDDPIIIKFVKANFVADGWLVTTANNGQEALRILNQNIPDIIVLDVLMPVMDGM 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E +R+ S++P+I+LSA+ DKI L GADDYL+KPF I EL AR+ LRR Sbjct: 64 ETCIQIRKQSSIPIIMLSAKGSSFDKIQCLKLGADDYLTKPFDIDELTARVESVLRRAGN 123 Query: 122 TTAPD----PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 P +K D++++L R + + E+ LTPIE L L+ N KVL R LL Sbjct: 124 KNIPRNEDVKCLKCGDISLNLDNRQVTVNKREIKLTPIELALFQELIQNPDKVLDHRYLL 183 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 ++VWGP ++ YL +++ HLR+K++Q A+ + +T GIGY Sbjct: 184 SKVWGPEYIQDKAYLHVFISHLRKKIKQSNAKSEYILTIPGIGY 227 >UniRef50_D1CC84 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CC84_THET1 Length = 233 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 139/223 (62%), Gaps = 2/223 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +++V+DE++I +++ L+ G V+ + + PDL++LDL +P +G+E Sbjct: 6 IVVVDDEKSILKYISQQLKAKGYNVYPGMNGEEAISLVEQHDPDLLLLDLKMPVMNGLEV 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR--HSA 121 + LR+WS VP+IV+SA + + AL++GADDY+ KPF EL AR++ LRR Sbjct: 66 CKRLREWSKVPIIVISAYDDVEYVVEALNSGADDYVRKPFHQEELFARVKTQLRRAEERP 125 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + + + +T++ + R + +EEV LTP E+ +L L+ NAGKV+T + LLN+VW Sbjct: 126 SQQVQSVFRCGPLTINFSRRQVTLNDEEVKLTPTEYSILEQLVQNAGKVMTHQMLLNRVW 185 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 GP E + YLR+Y+G LR+KL+ P P+ +TE G+GYRF+ Sbjct: 186 GPEYTEENEYLRVYIGRLRRKLDPGPNGPKFIVTEQGVGYRFV 228 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 140/223 (62%), Gaps = 3/223 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+DE+ I + L+ +L D V A + L K D+I+LD+ LP DG+ Sbjct: 14 VLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLSV 73 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + +R++S VP+I+L+A+ ++ DKI LD GADDY++KPF I E++AR++ LRR+S+ T Sbjct: 74 CQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSIT 133 Query: 124 APDP---LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + ++K D+ +D +R ++ ++E++LT EF LL +L N GKV ++ LL V Sbjct: 134 QKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLKAV 193 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + ++M LR+K+E +P+ P++ T+ G+GY F Sbjct: 194 WGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_D1BX45 Two component transcriptional regulator, winged helix family n=26 Tax=Actinomycetales RepID=D1BX45_XYLCX Length = 227 Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 139/224 (62%), Gaps = 3/224 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT+VL+ ED+ AI L AL +G V T Q + A + D+++LDLGLPD DG Sbjct: 1 MTHVLLAEDDPAIAEPLARALTREGYDVIVQGTGQGAIDNAGS--ADVVVLDLGLPDMDG 58 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 ++ R+LR +VP++VL+AR++E D + LDAGADDY++KPF + EL AR+R LRR Sbjct: 59 LDVARELRGSGLSVPILVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRT 118 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T + ++ DV VD++A +G+ E+HLT EF LL VL+ NAG V+ + L+ Sbjct: 119 HGETTEEEELRAQDVRVDVSAHRAFQGDRELHLTTKEFDLLKVLVANAGSVVVRDTLMRD 178 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + V + L +++ LR+KL D PR+ T G+G+RF Sbjct: 179 VWGSDPVGSTKTLDMHVSWLRRKLGDDANAPRYVSTVRGLGFRF 222 >UniRef50_D1C556 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C556_SPHTD Length = 240 Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 132/223 (59%), Gaps = 7/223 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAET----LQRGLLEAATRKPDLIILDLGLPDG 58 +L+VEDE + R + + L RV A T L+ LEA ++L + Sbjct: 9 TILVVEDEPRLVRLIESILRTADYRVLTAATGADALEMVALEAPDLILLDLLLPGDI--- 65 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 DG + R +R++S VP+I+L+AR++E+DK+ + GADDY++KPF EL AR++ LRR Sbjct: 66 DGFDVCRRVREFSDVPIIMLTARTQETDKLRGFELGADDYVTKPFSAKELLARVQAVLRR 125 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A + D+ +DLAA + RG E++HLTP EFRLL L G+V+ QLL Sbjct: 126 SRGFAAGPARLTVGDLVIDLAAHRVTRGGEDIHLTPTEFRLLVALARRPGRVIPHDQLLT 185 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 +VWG + YLR YM +LRQKLE++P RP H +TE G+GY Sbjct: 186 EVWGAEYRDEVEYLRTYMRYLRQKLERNPTRPTHLLTEPGVGY 228 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 136/221 (61%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+++DE +R LR+ L+ +G VFEA+ + GL A KPDLI+LD+ +P+ G++ Sbjct: 4 TILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLD 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 F+R + + P+I+L+A+ E+ DKI L+ GADDY++KPF E+ AR+R LRR Sbjct: 64 FMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKA 123 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 +++ ++ ++ +A + GE+ V LTP EF +LA L+ + G V ++ LL++ G Sbjct: 124 QPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRTSG 183 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + +++ +LR K+E DP PR+ T G+GYRF Sbjct: 184 QAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 133/224 (59%), Gaps = 3/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VED+ +R L L +G + AE + L KP L+ILD+ LP DG E Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---H 119 R +R S+VP+++L+ARS ESDK+ L+AGADDYLSKPFG+ EL AR++ LRR Sbjct: 91 LCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQTQ 150 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 ++ T +K D+ + + ++ R + +P EF L + ++ N +V ++ QLL + Sbjct: 151 NSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLEK 210 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + + +++ LRQK+E DP+ PRH IT G GY+F Sbjct: 211 VWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_B8GBC5 Two component transcriptional regulator, winged helix family n=4 Tax=Chloroflexi (class) RepID=B8GBC5_CHLAD Length = 227 Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 134/222 (60%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+D+ ++ +R LE +G RV + + + ++PDL+ILD+ LPD DG+ Sbjct: 6 TILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQRPDLVILDIMLPDLDGLT 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R++++ P+++L+A++ D I LD GADDYL+KPF EL AR+R LRR + Sbjct: 66 VCQRVREFASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRRVPSV 125 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 P V +T++ R + + LTP E++LL VL AG V+T QLL VWG Sbjct: 126 NRP-LTVGNGLITINPRQREVRVRGTIIDLTPTEYQLLMVLAEQAGAVVTHEQLLRAVWG 184 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + YL++Y+ HLR+K+E DP +P+ +TE G+GYR + Sbjct: 185 NEPNRDNDYLKVYIWHLRRKIEFDPRQPQLLLTEWGVGYRLL 226 >UniRef50_A7K2K9 DNA-binding response regulator KdpE n=19 Tax=Gammaproteobacteria RepID=A7K2K9_VIBSE Length = 232 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/224 (41%), Positives = 128/224 (57%), Gaps = 2/224 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DE I F+R +L +G A T+ P +I+LDLGLPDGDG E Sbjct: 4 KVLVVDDEPRIHTFIRISLSAEGFDYIGASTIAEAKACFEAHSPHVILLDLGLPDGDGTE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-SA 121 F+ LRQ PV+VL+AR +E +KI L+AGA+DYLSKPFG+ EL AR++V +R Sbjct: 64 FLTTLRQTYKTPVLVLTARDQEEEKIRLLEAGANDYLSKPFGVKELIARIKVLVRDLVDE 123 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T D LV V + + + E+ LT EF + L+ GK++ Q LL+ +W Sbjct: 124 QTVADELVA-GRVKIIKSTHQFWLDQREIPLTKKEFSFIEQLILKPGKLIEQTHLLSVIW 182 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + VE +HYLR+ + LR+KL R TE G+GYR +L Sbjct: 183 GKSHVEDTHYLRVLVSQLRKKLNDSADEQRLLKTEPGLGYRLVL 226 >UniRef50_C7GCA3 KDP operon transcriptional regulatory protein KdpE n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GCA3_9FIRM Length = 267 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+++++ +I +R A+E + +++ A + ++G+ + PDLI++D D +GI Sbjct: 12 ILLIDEDTSISYLIRRAMEKENYKIYIAGSGKQGMEMSTGVCPDLILMDNKFSDMEGITL 71 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 I+ R+W+ P+I+LS RS DK+ AL AGADDY+ KPF EL AR+ ALRR + Sbjct: 72 IQWFREWTDCPIIILSERSSYLDKVEALYAGADDYMVKPFHEKELAARIFSALRRRISVG 131 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 A + ++ VD R + G EVH +P+E+R++ L N+G V+T + LL ++WGP Sbjct: 132 A-HTYYEAGNLKVDFTKRQVLLGGTEVHFSPVEYRIIESLALNSGTVVTYQMLLEKIWGP 190 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 A ++S LR+ M ++R+K+E P P + T +GYR + Sbjct: 191 YAEQNSRILRVNMTNIRKKIESSPLEPEYITTIPRVGYRML 231 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 1/224 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LI+EDE +R L+ LEG+G RV A + GL KPDL++LD+ +P DG Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +LR+ + VP+++L+A+ + D++ LDAGADDYL KPF EL AR+R LRRH Sbjct: 61 FALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRH 120 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 ++F +V +D+ + RG +++H T E+ +L +L G+ +++ + L+ Sbjct: 121 QREKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDV 180 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG A + + ++ LR K+E DP +PR T G+GYR Sbjct: 181 VWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRL 224 >UniRef50_D1CGU9 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGU9_THET1 Length = 233 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/222 (42%), Positives = 134/222 (60%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+++DE I R L++ L G V A + + G+ + D ++LDL +P G+E Sbjct: 10 VLVIDDEHEILRILKSVLTNAGYAVSVASSGEEGMELFGLQPFDAVLLDLRMPGLSGLEV 69 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 LR S VP+IVLS EE+DK+ ALD GADDYL KPFG+ EL ARLR ALRR + Sbjct: 70 CAWLRARSDVPIIVLSVMGEENDKVRALDTGADDYLVKPFGVAELLARLRAALRRAGSKG 129 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 P+ +V+ D+T+DL R ++ + V LTP E+ +L L + GKV+T R LL +VWG Sbjct: 130 QPEMIVRSGDLTIDLERRAVYVAGQLVRLTPTEYDVLKCLAVHGGKVVTHRMLLREVWGS 189 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 + LR + +R+KL DP PR+ +TE G+GYR M+ Sbjct: 190 EQPADTSNLRYTITQIRRKLGDDPTHPRYILTEPGVGYRLMV 231 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 138/234 (58%), Gaps = 16/234 (6%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LI +D+Q IR LR LE +G RV EA L DL++LD+ +P DG + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---HS 120 +R +R+ SA+PVI++SA+ ++ DKI LD GADDYL+KPF E AR+R LRR Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 121 ATTAPD------PL-----VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 A +PD PL + D+T+DL A V+HRG+E + LTP+EFR+L++ +++ G+ Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPGR 190 Query: 170 VLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 V T++Q+ + WG V + + + + LR KL DP + T G+GYR Sbjct: 191 VFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPG--AYIATVRGLGYRM 242 >UniRef50_A5IUM5 Two component transcriptional regulator, winged helix family n=70 Tax=Staphylococcus RepID=A5IUM5_STAA9 Length = 231 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 131/224 (58%), Gaps = 1/224 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 + +LI+ED+ AI L AL D V A+ + + KPD+I+LDLGLPD DG+ Sbjct: 3 SKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGL 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 I ++RQ + +P+IV+SAR EE I ALD GA+DY++KPF + EL+AR+RV R + Sbjct: 63 CLISEIRQHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + + +++D ++ + +EVHLTP EF LL +L N+ GKVLT +L +++ Sbjct: 123 HQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIY 182 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFI-TETGIGYRFM 224 G LR++M LRQKL Q + I T IGY+ + Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGYQML 226 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 133/221 (60%), Gaps = 1/221 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L++ED+ IR +R AL DG V EA + GL D++++DL LPD DG E Sbjct: 21 ILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFEC 80 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R LR+ S VP+I+++AR++ D +A L+AGADDY++KPF + EL AR+R LRR + Sbjct: 81 CRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRSAG 140 Query: 124 AP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 P ++ D+ + A V+ R E +HLT EFRLL L + +V ++ QLL +VWG Sbjct: 141 GPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERVWG 200 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + +++ LR K+E+DPA PR +T G+GY+ Sbjct: 201 YDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKI 241 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VEDE +IRRF+ LE G V EAE+ + L PDL++LDL LP DG+E Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 63 FIRDLRQWSAVP-VIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + +R+ P +I+L+A+ +++DKI L+ GADDY+ KPF EL AR++ LRR Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 A + + +D AA + + +EV LTP E+ LL + + N GK L + ++LN +W Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + L +++ LR+K+E +P+ PR+ T G GYR+ Sbjct: 187 GEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRW 228 >UniRef50_Q187R8 Two-component response regulator n=6 Tax=Clostridiales RepID=Q187R8_CLOD6 Length = 223 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 137/221 (61%), Gaps = 7/221 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 N+LI+ED+ + L A E DG VF+A T Q GL ++ D IILD LPDGDG + Sbjct: 2 NLLIIEDDINLNEGLFYAFENDGFNVFKAYTKQEGLNIFNSKNIDFIILDCNLPDGDGFD 61 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ S +P+I+L+AR E D++ L+ G DDY++KPF + L+AR++VA+R+ S Sbjct: 62 VCQIIREKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIRKKSN- 120 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 + ++ + + +D +++ +E + L+ +E++LL+ L+ N G++L + Q+L+ +W Sbjct: 121 ---NKVIYSNGIKLDQKLLKVYKNKECLELSSVEYKLLSYLIENKGQILLKEQILHHIWD 177 Query: 183 P--NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 N V+ + + + + LR K+E DP+ P++ T G+GY Sbjct: 178 SEENYVD-DNIVSVNIRRLRVKVEDDPSNPKYIKTAYGMGY 217 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 136/226 (60%), Gaps = 5/226 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +++V+DE+ IR + LE +G RV +AE + L K DLIILD+ +P+ DGI Sbjct: 4 NTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGI 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E +R+ +P+I+LSA++E+ DKI L AGADDY++KPF EL AR++ LRR+ Sbjct: 64 EACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKK 123 Query: 122 TTAP-----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 D +++ ++T++ A + GE++V LTP EF +L +L N G V + ++ Sbjct: 124 FNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKI 183 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +VW + + + +++ LR+K+E++P +P++ T G+GY+ Sbjct: 184 YERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VED+ +I L L +G RV AE +RGL A DLII+D+ LP +G E Sbjct: 18 TVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGFE 77 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R LR + +PVI+LSAR E DK+ L+ GA+DY++KPF + EL AR++ LRR + Sbjct: 78 LLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAI 137 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 A ++ D+ ++ A R + RG+ + LT EF +L L G+VL++ Q+ +VW Sbjct: 138 ARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVW 197 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 GP + ++ LR KLE++ PRH +T G+GYRF+ Sbjct: 198 GPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFV 240 >UniRef50_C6NTZ4 DNA binding response regulator KdpE n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NTZ4_9GAMM Length = 248 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 135/230 (58%), Gaps = 9/230 (3%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAET------LQRGLLEAATRKP-DLIILDLGLP 56 +L+VED+ I R L L + + ET A R P ++ LDLGLP Sbjct: 7 ILVVEDDLRIGRLLENNLRLGDTYLVDWETSAAAAQRAVRQRRAHERTPYSVVFLDLGLP 66 Query: 57 DGDGIEFIRDLRQWSAVPVI-VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 D DG++ I R SA VI V+SAR E+DKI A GADDYL+KPF GEL ARL+ Sbjct: 67 DRDGLDLIPWFRTQSADQVIIVVSARGNEADKIQAFQLGADDYLTKPFHYGELMARLQAH 126 Query: 116 LRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 LRR TT +V+ + +D RV+ GE E+ LT E++L+ +LL N G ++ ++ Sbjct: 127 LRRVHVTTNEGAIVR-GEWRLDDNRRVLVIGEREILLTNKEYQLMRILLRNCGTIVPSKR 185 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +LN +WG EH+HY+RIY+ LR+K+E D + P+ +TE GIGYR ++ Sbjct: 186 ILNAIWGHTHEEHTHYVRIYVQRLREKIESDASLPQFLLTELGIGYRLVV 235 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 128/220 (58%), Gaps = 1/220 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+DE+ I L L+ +G R ++ T + G+ +PDLI+LD+ LPD DG Sbjct: 13 ILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLDGYS 72 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +RQ++ VP+ LSA++E+ DKI L G DDY++KPF E+ +++ RR+ Sbjct: 73 VCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQYK 132 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 + +F D+T+D A + R + LT EF +L L+ N ++ ++ +L VWG Sbjct: 133 EKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAVWG 192 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + + + + ++M HLR+K+E +P++P + IT G+GY+ Sbjct: 193 ETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYK 232 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 133/220 (60%), Gaps = 4/220 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+D++A+ + L DG VF A+ Q L + KPDL++LDL LP DGIE Sbjct: 34 ILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQ-ALEVFRSSKPDLVLLDLMLPGSDGIE 92 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R S VP+++L+A+S+ SD + L++GADDY+ KPF EL AR+R L R Sbjct: 93 VCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARL-RPGDQ 151 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 AP+ L + +DVT+D+A ++ RG E + LTP+EF LL L +V T+ LL QVWG Sbjct: 152 KAPETL-RIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG 210 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + + +++ LR K+E+DP P +T G+GY+ Sbjct: 211 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_A9FZS4 Response regulator n=2 Tax=Myxococcales RepID=A9FZS4_SORC5 Length = 270 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 136/224 (60%), Gaps = 4/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LI+EDE I L ALE +G V A + G+L A KPD I+LDL LPD +G + Sbjct: 46 KILIIEDEPHIVLGLTDALEFEGFSVASASKGKDGVLLARQEKPDAILLDLMLPDTNGFK 105 Query: 63 FIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 DLR+W A VP+I+L+AR +E DKI LDAGADDY++KPF +GEL ARLR AL R +A Sbjct: 106 VCEDLRRWDAFVPIIMLTARGQEIDKIRGLDAGADDYVTKPFSVGELIARLR-ALFRRAA 164 Query: 122 TTAPDPLVKFS--DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 A P+ FS +V +++ A + RG L+ E LL +L G+ +++ ++L + Sbjct: 165 RPAEAPVEVFSIGNVQINMTAHTVSRGSRSDQLSFYEVELLRLLHERLGQPVSREEILQK 224 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +WG A + + ++ LR+K+E+ P +P H +T G GY+ Sbjct: 225 IWGIEAGPSNRTVDNFIVKLRKKIERSPDKPEHILTVYGFGYKL 268 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLI +DE+ IR L+ LE + V A + L +L+ILDL +P DGIE Sbjct: 6 VLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGIEV 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR----- 118 R LR + +P+++L+A+ +E DKI L GADDY++KPF + E+ AR++ +RR Sbjct: 66 CRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLVLG 125 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 +A T ++ F +T+D++ ++ G++E+ LT E LL +N +V T+ QL Sbjct: 126 SNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQLFR 185 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VW N +E + + +++ LR+K+E DP+ P+ T GIGY+F+ Sbjct: 186 NVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFV 231 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 130/223 (58%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VED++ I L L +G V A L + PDL++LD+ LP+ DG Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E +++R+ S VP+I+L+A+ EE DK+ L GADDY++KPFG EL AR+ LRR+ Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + + + +DL R + +EV+L+ EF +L +LL++ G+V T+ ++ + Sbjct: 121 SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHI 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG N + +Y+ LR+K+E DP+ P++ IT +GY+F Sbjct: 181 WGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 135/228 (59%), Gaps = 13/228 (5%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +VL+VEDE A+ L+ LE +G V A + L++A PDL+++D LP GIE Sbjct: 4 HVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIE 63 Query: 63 FIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 R LR + + VP+I+L+AR EE+D++ LD GADDY+ KPF + EL AR+R LRR Sbjct: 64 VCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRI 123 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 A D +++ D+T+D A + R + E+HL P EFRLL L+ + G+V ++ QLL+ Sbjct: 124 RPGLAED-VIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDA 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKL----EQDPARPRHFITETGIGYRF 223 VWG + + + +++G LR+ L E+DP R T GY F Sbjct: 183 VWGSDVYVEARTVDVHVGRLRKALNNKEERDPIR-----TVRSAGYAF 225 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 133/227 (58%), Gaps = 5/227 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG-DGI 61 +LIV+DE + R ++ L G V A + + + DL+ILD+ LP +G Sbjct: 5 TILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGPLNGF 64 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-HS 120 E + +R++S +P+I+L+ R+ E D+I DAGADDY++KPF + EL R++ LRR H Sbjct: 65 EVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRRSHP 124 Query: 121 ATTAPD-PLVKFSDVTVDLA-ARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + P P+ KF D+ ++ A RV RG E V LT E+++L L NAGKV+T LL Sbjct: 125 SEEFPKGPVYKFGDLVINFAQKRVFVRGRE-VRLTATEYQVLYHLGCNAGKVITHEDLLT 183 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +VWG HYLR Y+ LR+K+E DP P++ + + GIGY L Sbjct: 184 RVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYLAL 230 >UniRef50_D0LLH3 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLH3_HALO1 Length = 226 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/229 (44%), Positives = 133/229 (58%), Gaps = 17/229 (7%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR----KPDLIILDLGLPDG 58 +LIVED++AI L L+ G ++ + GL EA R P LI+LD+ LP Sbjct: 5 KILIVEDDEAIAAGLALNLKIAG---YQTTVVHDGL-EALKRLEESSPHLILLDINLPSE 60 Query: 59 DGIEFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 +GI + LRQ + VPVI+LSAR +E DK+AAL GADDY++KPFG+ EL AR+ LR Sbjct: 61 NGIGVLGTLRQSGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLR 120 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R T L +F V V+L R + R E + LT +EF LLA L+ N +V ++ +LL Sbjct: 121 R-VGTQEISALHRFGSVEVELETRSVVRQGEAIKLTHLEFELLAFLVKNPSRVFSREELL 179 Query: 178 NQVWGPNAVEHSHYLRI---YMGHLRQKLEQDPARPRHFITETGIGYRF 223 QVW + S LR ++ LR KLE DP PR FIT G GYRF Sbjct: 180 RQVWK----QSSGTLRTVDNFVAQLRSKLESDPENPRFFITVRGSGYRF 224 >UniRef50_B9KYS7 KDP operon transcriptional regulatory protein kdpE n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYS7_THERP Length = 234 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 129/220 (58%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+ + I+R LR L G + A T + L +PDL++LD+ LPD G E Sbjct: 6 VLLVDGDPVIQRLLRATLTTRGYSLVVAATAEAALGALDRHEPDLVLLDIVLPDRCGFEL 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 ++D+R SAVPVI++SAR+ D+I + GADD+++KPF + EL AR+ LRR S T Sbjct: 66 LQDIRLRSAVPVIIVSARAAPDDRIRGFELGADDFVAKPFYLDELVARIEAVLRRTSPTV 125 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 PL+++ VT+DLA R + +EV L+ E+ LL L G+V+ +LL+ VWGP Sbjct: 126 DRSPLLQYDRVTIDLANRRVFVDGQEVRLSRTEWSLLEQLARQPGRVVRHSELLSHVWGP 185 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + ++YLR ++ LR KL D R T G+GYR Sbjct: 186 EFIRETYYLRTWVSRLRAKLRDDEEPHRIIQTRPGLGYRL 225 >UniRef50_C6PZ92 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ92_9CLOT Length = 235 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 132/227 (58%), Gaps = 11/227 (4%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEA----ETLQRGLLEAATRKPDLIILDLGLPDGD 59 +L+VED++ I + LE +G + +A + + + + LI+LDL +P D Sbjct: 9 ILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQ---LIVLDLMVPFVD 65 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G E IR +RQ S VP++V+SA++ E DKI+A+ GADDY+ KPF + E R++ +RR+ Sbjct: 66 GFEIIRRVRQKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRY 125 Query: 120 ----SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 S + + + D+ VD+ A I +G + + +TPIEF +L + L N KV T+ Q Sbjct: 126 IYFNSEQEMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQ 185 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + + +WG +A+ + + + +++ LR K+E D P + T G+GY+ Sbjct: 186 IYDSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYK 232 >UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97MA9_CLOAB Length = 235 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 135/229 (58%), Gaps = 5/229 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +L+V+DE++I + L T L+ +G V + G+ + P++IILD+ LPD DG Sbjct: 7 SKILLVDDEESILKLLTTVLKKEGFSNVITSTNGMDGVKKCRENAPEIIILDIMLPDIDG 66 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 E R +R +S+VP++ LSA+SE++DKI L GADDY++KPF E+ R++ L+R Sbjct: 67 FEVFRQIRNFSSVPIMFLSAKSEDTDKIIGLGLGADDYITKPFSPKEVALRVKAHLKRIE 126 Query: 119 --HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + T + ++K T+D I + ++ L E LL L+ N +L++ ++ Sbjct: 127 MVKKSLTNRENIIKTEHFTIDFEKGEIIKNDKSTILRAKELLLLKYLVENKNIILSKEKI 186 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +N VW + V + + + +++ LRQKLE DP+ P++ +T G+GY+ L Sbjct: 187 VNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKLKL 235 >UniRef50_C1F4X4 KdpE n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4X4_ACIC5 Length = 238 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 142/224 (63%), Gaps = 2/224 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +L+V+DE AIRR LRT+L+ G EA + L ++ D ++LDL +P G+ Sbjct: 6 TRILLVDDEAAIRRALRTSLQELGFETTEASRGEEALHLLQSQSFDAVLLDLNMPGIGGM 65 Query: 62 EFIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + +R Q +P+++L+ R +E DKI AL++GADDY++KPF + E AR+R A+RR Sbjct: 66 RTLTRMRTQCPRMPILILTVRDDEEDKIEALESGADDYVTKPFSMRECVARIRAAVRRAK 125 Query: 121 ATTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 A P + ++ ++ + R++++G + VHLTP E+ +L L+ NAG+ +T +LL Sbjct: 126 APDKPGNAPLEVGEIRLLPEQRLVYKGGQPVHLTPKEYEILHYLMTNAGRAVTHGKLLTT 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + YLR ++ LR+K+E+DP+ P++ +T+ +GYRF Sbjct: 186 VWGADYRQEIDYLRTFVRQLRKKIEEDPSNPKYLLTDAYVGYRF 229 >UniRef50_B9L1T3 Phosphate regulatory protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1T3_THERP Length = 253 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 134/221 (60%), Gaps = 2/221 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LIVED+ + + L +LE G V+ A+ + ++ A T +PDLIILDL LP DG + Sbjct: 21 ILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAIMLARTIRPDLIILDLMLPGIDGRDV 80 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R +R+WS+ P++VL+AR E D +A GADDY+ KPF EL AR+ LRR + TT Sbjct: 81 CRLIRKWSSAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLRRSAETT 140 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 A + L + V RV++RG EVHL P EF LL L+ AG+V T+++LL+ VWG Sbjct: 141 AGNVLTAGTLVIFRDEHRVVYRG-REVHLAPREFALLTALVERAGRVCTRQELLDLVWGQ 199 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + V+ + + +++ +R+ L +P T GIGYRF+ Sbjct: 200 DVVDLRN-VDVHIHRIREALGGEPDGSNLIRTVHGIGYRFV 239 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 132/220 (60%), Gaps = 4/220 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++L++EDE + RF+ T L +G RV A GL A + PDL++LD LP G+E Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 63 FIRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R LR + VPV++++AR E SD+ A LDAGADDY+ KPF I EL +R+R+ LR+ Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + D + F D+ +D R + RGE +V LT E+ LL L+ + +VLT++Q+L VW Sbjct: 130 SR--DGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVW 187 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 G + S+ + +Y+ +LR K+E P R T G+GY Sbjct: 188 GCDFTGDSNIIEVYIRYLRLKIE-GPGEKRLIQTVRGVGY 226 >UniRef50_UPI0001C31C36 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31C36 Length = 235 Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEA----ETLQRGLLEAATRKPDLIILDLGLP 56 M VL+VEDE +RR +R LE G V EA E L+ LL++AT PDLI+LD+ +P Sbjct: 3 MAEVLVVEDEDDVRRLVRVLLERAGHSVSEAGNGIEALR--LLKSAT--PDLIVLDVTMP 58 Query: 57 DGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 + DG + + +R + VPV++L+AR+ E DK+ L +GADDY++KPFG EL AR+ L Sbjct: 59 ELDGWQTLERIRDLTEVPVLMLTARAGELDKVRGLKSGADDYVTKPFGRQELLARVEALL 118 Query: 117 RRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 RR S P + + V VD +R + V LTP+EF+LL+ + + + L + +L Sbjct: 119 RRTSGPPEVRPAYRDAIVMVDYVSREVTVAGRPVQLTPLEFKLLSAFVRHPNETLARDRL 178 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L VWG +++Y+G+LR+KL D A P T G GYR+ Sbjct: 179 LELVWGDTEGFGGDQVKLYVGYLRRKLGWDAAAPSPIETVRGFGYRY 225 >UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9A4_9FIRM Length = 226 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 5/223 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 + +VED+ I L+ +LE V E + ++ KP L++LD+ LP GI+ Sbjct: 5 IYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMSGIDA 64 Query: 64 IRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 ++ L+ ++ ++P+I+LSA+S E DK+ AL+ GADDY++KPF + EL +R++ LRR Sbjct: 65 LKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVLRR-- 122 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + D ++ + D+T+D ++ EEV LT E+++L +L N G+V+T+ +LLN+V Sbjct: 123 SYKVEDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELLNEV 182 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + S L ++M LR K+ + + ++ T GIGY+ Sbjct: 183 WGYDFEGESRTLDMHMKTLRNKIGSEDDKYKYIKTIRGIGYKL 225 >UniRef50_UPI0001AEBE73 response regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBE73 Length = 231 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 130/222 (58%), Gaps = 3/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VED+ IR+ L AL +G EA +++ L +PDL+ILDLGLPDG+G E Sbjct: 4 TILLVEDDANIRQMLSIALGAEGYLCVEAASVREALSLFNQHRPDLVILDLGLPDGEGSE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 ++ +R+ S +PV+VLSAR +E DK+ L GA+DY+SKPFGI EL R++V LR + Sbjct: 64 VLKRIRESSRLPVLVLSARDQELDKVDLLSRGANDYVSKPFGIRELVTRVKVLLRDFNPV 123 Query: 123 TAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 P P + + +D+ R + E + L P E +LL L G ++Q++LL ++W Sbjct: 124 VEPTSPTRQIGKIALDITERRLLVEGEVIALAPKEVQLLDELTKQPGAFISQQELLRRIW 183 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + E +HY+R+ + LR+K+ DP T GYR Sbjct: 184 GLHHSEDTHYIRVLVRQLRKKI--DPFEKDLIETMPKQGYRI 223 >UniRef50_B5EL18 Two component transcriptional regulator, winged helix family n=3 Tax=Acidithiobacillus RepID=B5EL18_ACIF5 Length = 247 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/231 (39%), Positives = 143/231 (61%), Gaps = 10/231 (4%) Query: 3 NVLIVEDEQAIRRFLRTALEGD-GMRVFEAETLQRGLLEAATRKPD------LIILDLGL 55 ++L+VED+ +I FL+ A++ + G R++ TL+ R+ L++LDLGL Sbjct: 10 DILLVEDDPSIGGFLQAAMDREPGYRLYWETTLKDAWRAWEKRQIQEGRPFALVLLDLGL 69 Query: 56 PDGDGIEFIRDLRQWSA--VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLR 113 PDGDG IR LR +IV+SAR E+DK+ ALD+GADDYL+KPF IGEL ARLR Sbjct: 70 PDGDGQGLIRRLRDHGGEQALIIVISARGGEADKVQALDSGADDYLTKPFTIGELLARLR 129 Query: 114 VALRRHS-ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 LRR ++A + +D + +G + +TP E++L + + N G++L+ Sbjct: 130 AHLRRRPVGSSAESSHWVIGVLELDDLTHTLRKGGVPIPMTPKEYQLFHLFVMNQGRILS 189 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 R++L VWG ++ + +HY+R+Y+ LR+K+E DP P++ +TE G+GYRF Sbjct: 190 YRRILGAVWGEHSSDQAHYVRLYIKRLREKIEDDPGMPQYLVTEKGVGYRF 240 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 132/232 (56%), Gaps = 18/232 (7%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEA-------ETLQRGLLEAATRKPDLIILDLGLP 56 +L+V+DE AI + LE +V E +Q+GL+ D +I+DL LP Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLV-------DFVIMDLMLP 57 Query: 57 DGDGIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 DGIE + +R++ +P+I+L+A++ + DKI L+ GADDY++KPF EL +R++V Sbjct: 58 QLDGIEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVI 117 Query: 116 LRRHSAT---TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 LRR DP ++ ++ +D V+ + E++ LTP EF+LL L NA +VL+ Sbjct: 118 LRRTDRAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLS 177 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + Q+L +VWG + + I++ HLR KLE DP P+ T G GY F+ Sbjct: 178 RDQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFV 229 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 134/225 (59%), Gaps = 4/225 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M N+LI+EDE+++ ++ LE +G V+ E G+ + DL+ILDL LPD DG Sbjct: 1 MNNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + LR+ S V + +L+A+S SDKI L+ GAD+YL+KP EL AR+ RR Sbjct: 61 EEVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRR-- 118 Query: 121 ATTAPDPLVKFSD--VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + ++ F+D + +D+ R++ EE++LTP EF +L +L +N GKV T+ ++ Sbjct: 119 VGCKKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIE 178 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +G + +++ +LR+K+E+D P++ +T T IGY+F Sbjct: 179 RAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_A6LQJ3 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridium RepID=A6LQJ3_CLOB8 Length = 231 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 N+LIVEDE+ IR + + + V+EA + L K DLI+LD+ +P+ DGI Sbjct: 2 NILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIMMPNVDGIS 61 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-HSA 121 I+ +R S +P+I ++A +SDK+ AL GADDYL KP EL AR+ LRR + Sbjct: 62 VIQKVRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYKY 121 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 D + ++ + +++G ++ L P EF++L +L++N GKV T++Q+ +VW Sbjct: 122 AEHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEEVW 181 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 S+ + +++ H+R+K+E DP P + T GIGY+ Sbjct: 182 EEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYKI 223 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 125/222 (56%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VED+Q I++ L L+ + +A + + DL+ILDL LP DG Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +++++ VPVI+L+AR EE DKI G DDYL+KPF EL R++ LRR+ Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + ++K+ V V+L R + + E V LT E+ LL +L N ++ T+ Q+++++ Sbjct: 121 KGRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRL 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 W E + + + + LR+K+E+DP+ PR T G+GY+ Sbjct: 181 WPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 128/223 (57%), Gaps = 2/223 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M VLIVED +R +R LE G RV A Q GLLEA +PDL++LD+ +P DG Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +EF+R R VPVI L+AR E DK+ L+ GADDY++KPF + EL AR+R LRR S Sbjct: 82 LEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRR-S 140 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + P+ +++ ++ +D R E V LT EF L++ L G+V T R L + Sbjct: 141 SEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFT-RLELLEQ 199 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 A+ + +++ +LR K+E +P +PR T G+GYR Sbjct: 200 LQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRL 242 >UniRef50_C3RMH7 Signal transduction regulator n=8 Tax=Bacteria RepID=C3RMH7_9MOLU Length = 229 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 134/221 (60%), Gaps = 7/221 (3%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 + +VED++ IR + AL +G V + + L E + P L I DL LP GI+ Sbjct: 7 IFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPKMSGIDA 66 Query: 64 IRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 I+++R+ S +P+++LSA+ E DK+ LD+G+DDY++KPFGI ELQAR+R LRRH + Sbjct: 67 IKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRHVTS 126 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 +++ +TVD R++ ++++ LT E++LL L++N +V+ + +LLN++WG Sbjct: 127 ----DIIRTKHLTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG 182 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + S L +++ LR KL D ++ T +GYRF Sbjct: 183 YDFIGESRALDVHIRALRSKLNDDG--HKYIKTIRSVGYRF 221 >UniRef50_B0TWK4 Response regulator receiver protein n=9 Tax=Francisella RepID=B0TWK4_FRAP2 Length = 228 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 6/227 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +LIVEDE I++ L G V A T PD++ILDLGLPD DG Sbjct: 2 IKKILIVEDEPQIKKLLEKTFLVLGYDVESAPTASIATSLLGQYHPDVVILDLGLPDQDG 61 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLR---VALR 117 ++++ +R S VP+IV+SAR++ + + AL+ GA+DY+ KPF + EL AR+R +A+ Sbjct: 62 QDWLKVVRISSDVPIIVVSARNDTEEVVKALENGANDYVKKPFDMPELIARVRRQLIAVI 121 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + A + F ++ VDL + +E+HL+ EF +L+ L+ +GK++ Q LL Sbjct: 122 KKDLEIA--NVYSFDNLIVDLNDHKVILDNQEIHLSKKEFSILSYLVKYSGKLIMQNTLL 179 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++VWG + + YLR+Y+G LR+KL +P +TE IGYRF+ Sbjct: 180 HEVWGDCYGDGAQYLRVYIGQLRKKLSACKKQPL-IVTENAIGYRFI 225 >UniRef50_C9XSY6 Two-component response regulator n=15 Tax=Firmicutes RepID=C9XSY6_CLODC Length = 241 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 138/227 (60%), Gaps = 4/227 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVED+ I ++ ALE +G + ++ L G ++ + +I+LD+ LPDG G Sbjct: 8 MLKLLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTLPDGTG 67 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + +R +S VP+I L+A EE + + LD G DDY++KPF I EL +R++ LRR Sbjct: 68 YELCKYIRGFSQVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKG 127 Query: 121 ATTAPD-PLVKFSDVTV-DLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 T+ + ++KF D+++ L ARV ++ ++E+ LT +E++LL +L+ N VL++ Q+L Sbjct: 128 NTSEENKKILKFGDLSIYTLEARV-YKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILE 186 Query: 179 QVWGPNA-VEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++W + + L +Y+ LR+K+ D P + T GIGY+++ Sbjct: 187 KLWDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYKWI 233 >UniRef50_A5FU14 Two component transcriptional regulator, winged helix family n=2 Tax=Acidiphilium cryptum JF-5 RepID=A5FU14_ACICJ Length = 231 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/219 (46%), Positives = 134/219 (61%), Gaps = 3/219 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+DE I RFL+ ALE G V AE L AAT PD+I+LDLGLPD DG + Sbjct: 12 VLVVDDEPQIHRFLKPALEAAGYVVLRAERGAEALRLAATMVPDVILLDLGLPDLDGQDV 71 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-HSAT 122 I LR++S VPVIVLSAR +E+ KIAA DAGA+DY+ KPFG+GEL AR+R A R + Sbjct: 72 IVKLREFSDVPVIVLSARDQEAQKIAAFDAGANDYVEKPFGLGELLARIRNAFRLIATGQ 131 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 P ++ + +D AAR + E+H T EFR+LA L + GK++T +L WG Sbjct: 132 GVPTEAIEIDGLRIDEAARSVSLDGAEIHFTKTEFRILAALARHRGKLVTHDDILQAGWG 191 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 Y+RIY+ +RQKL + H T++G+GY Sbjct: 192 DLQEYDRAYVRIYIRSIRQKLGKFA--DNHLKTKSGLGY 228 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LI++DE + ++ L DG +V A L + PDLIILD+ LPD +G+E Sbjct: 6 ILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLEL 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH---- 119 ++LR+ + P++ LS + + DKI L G DDY++KPF EL AR+ LRR+ Sbjct: 66 CQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRILT 125 Query: 120 SATTAPD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + T + D ++ + +T+D A ++ ++ V LT EF +L++L + V + QL + Sbjct: 126 NQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQLYD 185 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +WG + + + + +++ +LR+K+E+DPA P+ +T GIGY+ Sbjct: 186 HIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria RepID=Q1NLC6_9DELT Length = 298 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 136/225 (60%), Gaps = 4/225 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L ++D+ I + L+ LE G + A +L PDL+ILDL LPDGDG+E Sbjct: 74 TLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGLE 133 Query: 63 FIRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-S 120 F L+ +PVI+L+AR + SDK+ L+ GADDY+ KPF EL AR++ LR + Sbjct: 134 FCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANPG 193 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 A TAP L++ ++ +DL + + +EV+LT EF+LLA L+ N ++T+ ++ ++ Sbjct: 194 AGTAPR-LLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRL 252 Query: 181 WGPNAV-EHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 W + + S + +++ HLRQK+E+ P++P H +T G GYRFM Sbjct: 253 WRDSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRFM 297 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 130/227 (57%), Gaps = 4/227 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +LI++DE IR L L+ G +EA L + + DL+I D+ +P DG Sbjct: 11 IKTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDG 70 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E ++ +R S VP + LSA+S++ DKI L GADDY+ KPF E+ +R++ RR Sbjct: 71 YELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMD 130 Query: 121 ATTAPDP----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + + +++ DV +DL + +++ ++ +T EF++L++L+ +AG+V T+ + Sbjct: 131 VFSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASI 190 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + + +Y+ LR+K+E +P +P + IT G+GYRF Sbjct: 191 YEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRF 237 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 4/225 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LIVED++ I R + L +G + + + L+ILD+ LP G E Sbjct: 7 ILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYEV 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH---- 119 ++ +R+ PV++LSA+ EE+DKI L GADDYL+KPFGIGEL AR++ LRR+ Sbjct: 67 LQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLNFS 126 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T +++ ++ +++ + G+ V LT EF +L + L N KV T+ QL Sbjct: 127 WETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLFKS 186 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +WG N + + + +++ LR+K+E+DP+ P + T GIGY+ + Sbjct: 187 IWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLV 231 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 124/221 (56%), Gaps = 10/221 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +LIVEDEQ + RFL L + V Q GL +A + DLIILDL LP +G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E R +RQ + P+I+++A+S+ DK+A LD GADDY+ KPF I EL AR+R LRR Sbjct: 61 LEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQP 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 D VTV+ A E+ LT E+ LL +L N V+ + Q+LN V Sbjct: 121 QKDIIDVNGTLLKVTVNGA---------EIELTKTEYDLLYLLAENKNHVMQREQILNHV 171 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 WG N+ ++ + +Y+ +LR KL + R + T G+GY Sbjct: 172 WGYNSEVETNVVDVYIRYLRNKL-KPYDRDKMIETVRGVGY 211 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L V+D+ I + L+ +L +G V A + + L +A PDL+ILDL +P DG E Sbjct: 5 ILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFET 64 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + L+ VP+I+LSAR+EE D++ G DDY +KPF EL R++ LRR Sbjct: 65 YQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGEPK 124 Query: 124 AP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 + ++K+ ++T+D R + +V LTP +F LL ++ +N +V T+ LL+++W Sbjct: 125 VNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKIWD 184 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + + +++ LR+K+E DP+ P + T G+GY+F Sbjct: 185 SSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKF 225 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 125/220 (56%), Gaps = 1/220 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +LI++D++ I +R L +G V A + GL +PDLIILD+ +PD DG+ Sbjct: 3 TKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGL 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E + LR+ + +P+++++ +D++ L+ GADDYL KPF EL AR++ LRR Sbjct: 63 EVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 D + FSD+ VDL+ R RG + + EF LL + + +VLT+ L+++VW Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 G + S+ L +Y+G+LR KLE PR T G GY Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEA-QNEPRLIHTVRGAGY 221 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 134/228 (58%), Gaps = 8/228 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRG---LLEAATRKPDLIILDLGLPD 57 MT+VLIVEDE+++ L L +G FEA + G L E D+++LDL LP Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEG---FEATVVTDGPAALAEFDRAGADIVLLDLMLPG 57 Query: 58 GDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 G + + LR S+VPVI+++AR E DK+ L+ GADDY++KP+ EL AR+R LR Sbjct: 58 MSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 118 R--HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 R + D +++ V +D+ V+ + + L EF LL L+ N+G+VLT+ Q Sbjct: 118 RGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQ 177 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L+++VWG + V + L +++ LR K+E DPA P H +T G+GY+ Sbjct: 178 LIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M ++IV+DEQ +R L+ G AE +R L PDLI+LD+ +P DG Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E R++R ++PVI LS R DK+A + GADDY++KPF EL+AR++ +R ++ Sbjct: 61 LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYA 120 Query: 121 ATTAPD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + P +++ + +D A E + LT E +LL + +V T QL ++ Sbjct: 121 MNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDR 180 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +W +A + +++++ HLR+K+E+ P RP + T G GYRF+ Sbjct: 181 IWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFV 225 >UniRef50_C3WA46 Two-component response regulator n=6 Tax=Fusobacterium RepID=C3WA46_FUSMR Length = 234 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 134/221 (60%), Gaps = 3/221 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + VLI+ED++ IRRFL+ LE +G +V E + G+ + PD+I+LDL +P G Sbjct: 4 LKKVLIIEDDKNIRRFLQLELEHEGYKVIIGENGEIGINKFKNETPDIILLDLMMPILSG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + +R+ S +P+I+L+A+ + +KI LD GADDY++KPF I EL AR+RVALR Sbjct: 64 EEVCKIIRKTSEIPIIILTAKDQTLNKIELLDMGADDYITKPFEIEELFARMRVALRNKK 123 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + + + ++ +++ ++++ +GEE++ LT E+ ++ + L N V+++ +++ ++ Sbjct: 124 EFKTHNTIT-YENLKLEIDSKILFKGEEKIFLTKKEYNIMYLFLLNKEIVISREKIIEEI 182 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 WG + + +Y+ LR+K+E + H T G GY Sbjct: 183 WGYDFEGKDKIVDVYINLLRKKIENKNEKYIH--TVRGFGY 221 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 130/227 (57%), Gaps = 3/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + VLI++DE+ I ++T L +G+ RV A T + GL + PDL+ILD+ LPDG+G Sbjct: 38 SKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEG 97 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + + +R S VP+I LSA+ EE+DKI L G DDY++KPF E+ R++ LRR S Sbjct: 98 YDICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVS 157 Query: 121 --ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + ++K ++ + + E + LTP E L+ L + +V+++ L Sbjct: 158 YLQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQ 217 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWG + + + +++ LR+K+E P++P +T G+GY+F++ Sbjct: 218 AVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFVV 264 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L++ED Q I + LE V GL T+ DLIILD+ LP DG++ Sbjct: 5 ILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQV 64 Query: 64 IRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---- 118 + LR + P+++L+A+ ESD++ L+ GADDYL+KPF + ELQAR++ LRR Sbjct: 65 CQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDMS 124 Query: 119 -HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 +T D + F ++ +D R + G++E+ LT EF LL + ++ G+V ++ +LL Sbjct: 125 QKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKLL 184 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VWG + H + ++ LR KLE D + P++ +T G+GY+F Sbjct: 185 DAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_Q020N6 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q020N6_SOLUE Length = 250 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 135/224 (60%), Gaps = 5/224 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++L+VED+ + + G +V A + GL A DLIILD+ LP DG E Sbjct: 26 SILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGFE 85 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R LR+ SA PVI+L+AR +SD++A L++GADDYL KPFG EL AR+R LRR T Sbjct: 86 VLRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGHT 145 Query: 123 -TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 AP +V+ + + +D AAR + E + +T IEF +L +L+ +AG+ +T+ +L ++ Sbjct: 146 DAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTAVLY 205 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFI-TETGIGYRFM 224 A + L +++ HLR+KLE+D R I T G+GY+FM Sbjct: 206 QRPATPYERSLDVHISHLRKKLERD---DRSVIRTIRGVGYQFM 246 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 131/232 (56%), Gaps = 12/232 (5%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+V+DE AI LR LE + +V A + L A +K D IILDL LP DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 I + +R+ P+++L+A+ E+DKI L+ GADDY++KPF E+ AR+R RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERR- 119 Query: 120 SATTAP--DPLVKFS------DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVL 171 TT P P+ + S D++VD + +G+ ++HLTP EF LL ++ KV Sbjct: 120 --TTQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQ 177 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++ +LLN VWG + + + I + HLR+K+E +P P + T G GY+ Sbjct: 178 SREKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQL 229 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP---DLIILDLGLPD 57 M +L+VEDE I L L +G ++ E + G+ A + DLI+LD+ LP Sbjct: 1 MIRILVVEDEPGIALGLEDDLTIEG---YDVEVARDGVTAARRGREGNFDLILLDVMLPG 57 Query: 58 GDGIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 DG+E R+LR+ P+++L+A++ E++K+ L+ GADDY++KPFG EL+AR++ L Sbjct: 58 KDGLEVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALL 117 Query: 117 RRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 RR S T + F DV VD A + + V LTPIEF+LL V + G+VL++ QL Sbjct: 118 RRASGDTDLET-CSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQL 176 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + WG + + + ++ +LR+K+ DPA PR+ G+GYRF Sbjct: 177 IAATWGRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRF 223 >UniRef50_C9XRU4 Two-component system response regulator n=12 Tax=Clostridium RepID=C9XRU4_CLODC Length = 278 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 131/225 (58%), Gaps = 4/225 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DE+ I + L DG + + +A + PD++ILD+ LPD DGIE Sbjct: 50 ILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAISLCKIACPDVVILDIMLPDIDGIE 109 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 + +R++S ++ LS+++++ DKI L +G DDY++KPF E+ R++ LRR Sbjct: 110 VCKKIREFSYCSILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQQYQ 169 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 S + ++K D+T+D+ +++ E+ LT E+ LL+ + N K++ + +L Q Sbjct: 170 SIVPSDSAVIKIGDITIDIEGNRVYKDRNEIELTGREYHLLSYMAQNVNKIIGKERLYEQ 229 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VWG + + + +++ H+R+K+E +P+ P+ IT G+GY+ + Sbjct: 230 VWGVYSSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKLV 274 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 N+L+V+DEQ I + L+ +G ++++ Q + + +L ILD+ LPD DG Sbjct: 4 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGFT 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ PVI+L+A+ EE DKI L GADDY++KPF EL AR++ LRR + Sbjct: 64 LCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTKY 123 Query: 123 TAPDP-----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + +P L+ FS + +D+ E+++ LTP EF +L VL +N G+V++ +L Sbjct: 124 NSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEELF 183 Query: 178 NQVWGPNAVEHS-HYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 ++VWG +S + + +++ HLR+K+ P++ T G+GY+ Sbjct: 184 HEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYK 229 >UniRef50_C7M0J0 Two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0J0_ACIFD Length = 230 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 129/227 (56%), Gaps = 4/227 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT+VL+VED+ I +R L G +V A L R+P++I+LDL +P + Sbjct: 1 MTSVLVVEDDPNIVDLIRANLLVRGYQVAAASDRSEALAALEARRPEIILLDLMIPGVES 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-H 119 E ++R+ ++ +IV+SAR E DK+ AL+AGADDYL+KPFGI EL AR+ LRR Sbjct: 61 FELCYEIRERTSAGLIVVSARRGEQDKVTALNAGADDYLTKPFGIEELMARITATLRRTR 120 Query: 120 SATTAPDP--LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 A + D +V + VDL +++ R VHLTP EF LLA L+ G++L+ LL Sbjct: 121 PAASQSDKGTIVLRPGLVVDLERQLVERDGVPVHLTPTEFALLAELIRGDGRLLSHAALL 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VWG + YLR+Y+ LR KLE P +T+ GYR + Sbjct: 181 RAVWGRGYETETEYLRVYIRRLRAKLEA-PGDAPLILTQPRAGYRLV 226 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 132/222 (59%), Gaps = 5/222 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+V+D++A+R LR +L +G V A L A+ +PD ++LD+ +P DG+E Sbjct: 5 ILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLEV 64 Query: 64 IRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---H 119 R LR +P++VL+AR S+++A LDAGADDYL KPF + EL AR+R LRR Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKLE 124 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 A + FSD+++D R + RG + LT EF LL +L+ N +VLT+ ++L + Sbjct: 125 DDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILEE 184 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 VWG + + L +Y+G+LR+K E + PR T G+GY Sbjct: 185 VWGFDFPTSGNALEVYVGYLRRKTEAE-GEPRLIHTVRGVGY 225 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 7/228 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLIV+DE +IR+ L T L G V A + L PD++ILD+ +P DG Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---- 118 +++R+ S VP+I+L+A + +D+I L+ GADDY+ KPF EL+AR+R LRR Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 119 -HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 S+ ++ F+ +T+DL R I++ E + LT +EF LL +L++ +G+ ++ +L Sbjct: 136 AFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADIL 195 Query: 178 NQVWGPNAVEH--SHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG H + + +++ LR KLE DP+ P +T G GY F Sbjct: 196 QEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 136/229 (59%), Gaps = 9/229 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRG---LLEAATRKPDLIILDLGLPD 57 MT+VLIVEDE+++ L L +G FEA + G L E D+++LDL LP Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEG---FEATVVGDGPSALAEFERSGADIVLLDLMLPG 57 Query: 58 GDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 G + + LR S+VPVI+++AR E DK+ L+ GADDY++KP+ EL AR+R LR Sbjct: 58 MSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 118 R---HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 R + A D +++ V +D+ V+ E + L EF LL L+ N+G+VLT+ Sbjct: 118 RGADNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRG 177 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 QL+++VWG + V + L +++ LR K+E+DPA P H +T G+GY+ Sbjct: 178 QLIDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKL 226 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DE +IR + LE G RV A T GL A +PDLI+LDL LP DG+E Sbjct: 4 TILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGME 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 LR+ S V +++L+ARS+E D++A L GADDYL+KPF EL AR+ LRR Sbjct: 64 ITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 +++F+ V +D AR + + LTP EF LL L N +VL++ L+ +VWG Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFI-TETGIGYRFM 224 + + +Y+ +R+K+E + I T G+GYRF+ Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTG--ENLIRTARGVGYRFV 224 >UniRef50_A1SG19 Response regulator receiver n=7 Tax=Actinomycetales RepID=A1SG19_NOCSJ Length = 234 Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 3/221 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+VEDE+ I L LE +G V ++ Q+ L AT P+++ILDLGLPD DG+E Sbjct: 9 VLVVEDEEDIAFPLVRTLEREGYDVSWVDSGQKALDTMAT-APEVVILDLGLPDIDGLEV 67 Query: 64 IRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R R+ +++++AR+ E D++ LD GADDYL+KPFG+ ELQAR+R LRR S+ Sbjct: 68 CRRAREAGFEGAIMIVTARAGELDRVVGLDYGADDYLAKPFGLAELQARVRALLRRTSSG 127 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 +A K + +D+ AR ++ G+EEV LT EF +L +L N KV+++ +L+ VW Sbjct: 128 SATAEGAKPDGLRIDVDARRVYAGDEEVPLTGKEFEVLNILAANRDKVVSRGRLMADVWD 187 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 N + L + +G LRQKLE R + G+G+R Sbjct: 188 ENWYGSTKTLDVTIGRLRQKLESVGVTDR-VVAVRGVGFRL 227 >UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostridiales RepID=C9XSJ2_CLODC Length = 228 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M + +VED++AI + L L +G V T L+E A K DL ++D+ LPDG+G Sbjct: 1 MKRIFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNKFDLALIDISLPDGNG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 ++++ +PVI L+A +ES + L+ GADDY++KPF EL AR+R ALR+ Sbjct: 61 FTICTEIKEKQDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSG 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + + + VD A V+ + EV L+ +E+RLL V ++N ++T+ +LL+++ Sbjct: 121 RFGST---FEICGLYVDTATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDEL 177 Query: 181 W-GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 W + + L +Y+ LR+K+E DP+ P+ +T G GYR Sbjct: 178 WDAAGEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRL 221 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 135/234 (57%), Gaps = 14/234 (5%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRG---LLEAATRKP-DLIILDLGLP 56 M VLIVED+ A+R + L +G+ E ET+ G L + KP DL++LD+ LP Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGI---ETETVPDGETALELLSDSKPFDLVLLDVMLP 57 Query: 57 DGDGIEFIRDLRQWSA----VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARL 112 DGI R+LR+ + VPV++L+AR +E+ + L+ GADDY++KPF +L +R+ Sbjct: 58 GMDGISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRV 117 Query: 113 RVALRRHSATTAPDP---LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 R LRR P ++F + +DL R + E+V LT EF +LA+L +N G+ Sbjct: 118 RAQLRRQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGR 177 Query: 170 VLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 V ++ Q+++ +WG +++ HLRQK+E DP PR+ T G+GYRF Sbjct: 178 VYSREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_UPI0001C31E43 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31E43 Length = 251 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG-DGI 61 +L+V+DE +R L + +G RV + + A++ D+++LD+ L G +G Sbjct: 24 TILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVALGSGPNGY 83 Query: 62 EFIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R LR + + VP+I+L+A E+D + L+AGADDY++KPFG+ EL++R+R LRR Sbjct: 84 EVCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLRRAG 143 Query: 121 A--TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A D LV+ + +D A R + E VH+T EF LL L+ + G++ +++LL Sbjct: 144 PRPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRLRNRQELLR 203 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +WG +A + +++ HLR+KLE +P PRH +T G GYR Sbjct: 204 AIWGDSAYRDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRL 248 >UniRef50_B8FS97 Two component transcriptional regulator, winged helix family n=6 Tax=Firmicutes RepID=B8FS97_DESHD Length = 239 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 129/227 (56%), Gaps = 5/227 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 +L+V+DE +R L L +G RV A + Q+ T +P ++ILD+ LPDGDG Sbjct: 7 CKLLLVDDEPDLRGMLVEILHKEGFQRVRTAASCQQAKELFQTEQPQVVILDVSLPDGDG 66 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 + + R SAVPV+ LSAR E+ +++ L GADDY++KPF EL RL+ L R Sbjct: 67 FSLMSEFRSISAVPVLFLSARDEDENRLLGLGLGADDYITKPFLPRELLLRLKAVLTRTY 126 Query: 120 ---SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + + PL + + VDL + ++ R + +V LT E+ LLA L N G ++T L Sbjct: 127 FPPTLRQSKKPLFRLGEAVVDLNSALVTRPQGQVTLTAKEYILLAKLYENRGSIVTGDSL 186 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + + L +++ LR+K+E +P+ PR+ +T G+GY+ Sbjct: 187 CRAVWGDDLYGYENTLMVHIRRLREKIEPEPSSPRYLLTVRGLGYKL 233 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLI+ED+ I ++ L G A G+ A + D+IILD+ LP DG+E Sbjct: 6 VLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLEV 65 Query: 64 IRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + LR+ VP+++L++RSEE DK+ +L+AGADDY++KPF I EL AR+ +RR+ Sbjct: 66 CQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRPE 125 Query: 123 TAPDPLVK-----FSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 P + F + +D + +E+ +T EF LL++ + N G+ ++ +LL Sbjct: 126 KEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTELL 185 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VWG + + H + ++ LR K+E++PA+P++ +T G+GY+F Sbjct: 186 DLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L++ED+ I R L L+ +G VF A + GL A D+I+LD+ LP G+E Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ S VP+I+L+A+ E SDK+ D GADDY++KPF EL AR++ LRR + Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 123 TAPDPLVKFSDVTVDLAARVIHR--GEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + +F D+T++ + + R G+ + L+ EF LL L+ N G VL++ ++L +V Sbjct: 124 VVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEEV 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + + L +Y+ +LR K+++ P + T GIG+ F Sbjct: 184 WGFDYIGNDNILDLYIKYLRDKIDR-PYERKFIQTVRGIGFIF 225 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LI+ED+ + R L+ E +G V A GL A +P LI+LDL LP +G E Sbjct: 6 TILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYE 65 Query: 63 FIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R LR+ +P+I+L+A+ +ESD + L GADDY++KPF I EL AR+ LRR Sbjct: 66 ICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRK 125 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T + F D D AR + R ++V L+P EF LL L+ NAG+ L++ ++++ VW Sbjct: 126 QTGT--VYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVW 183 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G ++ + ++ LR K+E DPA PR T GY+F L Sbjct: 184 GYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFEL 227 >UniRef50_B0MRC9 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRC9_9FIRM Length = 222 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 4/223 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT++LIVED + + L L + V A+T ++ L LI+LD+ LP DG Sbjct: 1 MTDILIVEDNEELADILCDFLRAENYTVSVAKTGEKALSLYEKYGARLIVLDIMLPGIDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 R +R+ S P++++SA+ ++ DK+ L GADDY+ KP+ I + A++ +R Sbjct: 61 FAVCRKIREESDTPILIVSAKVDKEDKLNGLILGADDYIEKPYDIDIMLAKIAGIFKRRY 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 A D L+ D+ V+ +R + R + + +T EF LL +L+ N G++LT+ L NQ+ Sbjct: 121 AV---DELID-GDIRVNKVSRTVCRNDIPIEMTVKEFELLVLLIENKGRILTKEYLFNQI 176 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG ++ L +++ LRQK+E DP P+H T G+GY++ Sbjct: 177 WGSDSFSEQQTLTVHIKRLRQKIEDDPKNPKHIQTVWGVGYKY 219 >UniRef50_Q3ZWG2 DNA-binding response regulator n=1 Tax=Dehalococcoides sp. CBDB1 RepID=Q3ZWG2_DEHSC Length = 235 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTAL--EGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 + ++I+ED+ I + AL ++V + G+ + PD ++LDLGLPD Sbjct: 2 LMKIVIIEDDLRIVEMIAMALYIRWPNIKVISTRFGEEGIEIVSNENPDAVVLDLGLPDI 61 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 DG+ ++ +R++S +PV++L+ R+ ESD + L+ GADDY+ KPF EL ARL ++R Sbjct: 62 DGLSVLKAIRRYSDLPVLILTVRAIESDIVQGLELGADDYMVKPFKQLELLARLHGMIKR 121 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 H + + ++ + ++ R++ G +E+ LT E RL+ + NAGK++T L Sbjct: 122 HQKSDDGE-IISTGSIQLNTLTRILELGSKEIILTSTECRLMRHFIFNAGKIVTIPSLAE 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 +WG N + ++ +R+Y+ LR+KLE+D PR IT+ GIGY Sbjct: 181 VLWGDNYLGAANAMRVYIRRLREKLEEDLKNPRFIITKPGIGY 223 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 130/226 (57%), Gaps = 7/226 (3%) Query: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 ++VEDE + + + LE G V A R + A PD++ILDLGLP DGIE Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 65 RDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTA 124 R LR +S V++L+ARS+E D + L GADDY++KPF EL ARL+ LRR T Sbjct: 127 RRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKTG 186 Query: 125 -------PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 ++ F +++D+ AR + +E V LT EF LLA L V ++RQL+ Sbjct: 187 QRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQLI 246 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++VWG + V H + +++GHLR+KL+ D +R ++ T G+GYR Sbjct: 247 DRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 139/236 (58%), Gaps = 14/236 (5%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRV------FEAETLQRGLLEAATRKPD----LII 50 + N+L++EDE IR + AL+ +G +EA L L T LII Sbjct: 21 VANILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLII 80 Query: 51 LDLGLPDGDGIEFIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQ 109 LD+ LP +G++ R +R Q VP++++SA+ E D++ L+ GADDYL+KPFG+ E+ Sbjct: 81 LDVMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREML 140 Query: 110 ARLRVALRRHSATTAP-DPLVKFSDVTV-DLAARVIHRGEEEVHLTPIEFRLLAVLLNNA 167 AR R LRR A P+++F D+ + R RGEE ++L+P E++LL + + + Sbjct: 141 ARCRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEE-LNLSPKEYKLLELFMRHP 199 Query: 168 GKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +V + QLL+QVWGP+ V S + +++ LR+K+E DP+ P++ +T G GYRF Sbjct: 200 RRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLI++DE+ + + LR + E +G V A + L + D IILDL LP DGI Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +RQ S V +I+L+A+ + DKI L+ GADDY++KPF EL AR+R +RR Sbjct: 78 LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEKG 137 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 +F D+ VD+ +R ++RGEE ++LTP EF +L +L+ N G+V + ++ VWG Sbjct: 138 EVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVWG 197 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + + +++ +LR+KL+ + T+ G+GY F Sbjct: 198 EPCYD-TRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYF 237 >UniRef50_A8SR47 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SR47_9FIRM Length = 239 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LIV+D+ + ++ LE +G A ++ K DLI+LD+ LPDG G F Sbjct: 11 ILIVDDDADLSMLIQDMLEDNGYAFLYAASIDDAYEVLTDNKCDLILLDINLPDGTGFSF 70 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT- 122 ++LR S VP+I S R+ E DK+ LD G DDY++KP+ + EL +R+R LRR Sbjct: 71 CKELRHTSQVPIIFASVRTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYGVD 130 Query: 123 -TAPDPLVKFSD---VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + L +D + ++ AR + R + V + P EF LL + N G+VLT+ Q+++ Sbjct: 131 DNKSEMLTLNTDGNEIEINRYARTVSRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQIMS 190 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 VWG + + +++ LR+KLE DP+ P+ T G GY Sbjct: 191 AVWGLYSDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGY 233 >UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SVV6_9FIRM Length = 228 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 132/230 (57%), Gaps = 12/230 (5%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQR--GLLEAATRKPDLIILDLGLPDG 58 M +L+VED+ I ++ LE G V A + + G LE DLI+LD LPDG Sbjct: 1 MKRILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCLEHGF---DLILLDRNLPDG 57 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 G+++ R+LR+ + VP+I L+AR E+D I AG DDY++KPF + L R+ LRR Sbjct: 58 RGLDYCRELRKSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRR 117 Query: 119 HSATTAPDPLVK----FSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + APD + + + D++VD ++ +E + L+ E+R+L +L+ N G+VLT+ Sbjct: 118 --SENAPDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRD 175 Query: 175 QLLNQVWGPNA-VEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++ ++W N + L +++ LRQK+E+D P + IT GIGY F Sbjct: 176 MIIQKIWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTF 225 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 127/228 (55%), Gaps = 7/228 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DE +IRR L T L G V A + L+ P L++LD+ +P DG Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 ++LR+ S VP+I+L+A E D+I L+ GADDY+ KPF EL+AR+R LRR Sbjct: 67 VCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKI 126 Query: 123 TA----PDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 T P+ ++ + +D R +++ E V LT +EF LL +L++ AG+ ++ +L Sbjct: 127 TTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASIL 186 Query: 178 NQVWGPNAVEH--SHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG H + + +++ LR KLE DP+ P +T G GY F Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VEDE IR + LE +G + EAE + + PDLI+LD LP G GI+F Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 Query: 64 IRDLRQWSA---VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 I+ L++ S +PV++L+AR EE D++ L+ GADDY++KPF EL AR++ +RR S Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 A + +++ +++D + + GEE + + P EF+LL + + +V ++ QLLN V Sbjct: 125 P-MAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG N + +++ LR+ LE R T G GYRF Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRF 225 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 130/228 (57%), Gaps = 4/228 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRV--FEAETLQRGLLEAATRKP-DLIILDLGLPD 57 MT +L+V+DE IR LR LE +G V L A + +P DL++LD+ +P Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPG 60 Query: 58 GDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 DG+E +R LR + VI+++ARSEE DK+ L GADDY++KPF E+ AR++ LR Sbjct: 61 MDGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLR 120 Query: 118 RH-SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 R TT DP ++F ++TVD R I V LT +EF LL L+ G+V ++ QL Sbjct: 121 RRRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 L QVWG + + +++ +LR +L D P T G+GY+F+ Sbjct: 181 LEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFI 228 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVEDE+ IR + LE + V+ A G T +PDLIILDL +P DG Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E ++RQ S VP+I+L+A+ EE D+I L GADDYL+KPF EL R+++ LRR + Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 121 -----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 A + +++F D+ + R + E EV LT EF +L V+ + +V ++ Q Sbjct: 121 QVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQ 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL +W S+ + + + LR+KLE+ + T GIGYRF Sbjct: 181 LLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRF 228 >UniRef50_UPI0001692EE0 response regulator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692EE0 Length = 230 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 135/223 (60%), Gaps = 4/223 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 V+I D +A+ L+ L V A T ++ + PDLIIL+L LPD +G+E Sbjct: 7 VVIDSDPEAVDE-LKPHLLEHAYDVTVARTWEQAVHLIPKESPDLIILELALPDVNGLEI 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS--- 120 R LRQ S+ P++ LS++ ++S I ALD GAD+Y++KP+ G+L AR+R LRR S Sbjct: 66 CRFLRQSSSTPILFLSSQKDDSVIIEALDQGADEYITKPYNPGQLLARIRALLRRCSIRT 125 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + + + +++F +++DLA+ ++ E V L+ EF LL++L +N V +L +V Sbjct: 126 SNSGENRVIRFPGLSIDLASHMVEAQGETVSLSAKEFALLSLLASNPNHVFRIEELFEKV 185 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 W +++ L +++ +LR+K+E +PA P++ IT G+GY+F Sbjct: 186 WSVDSLGDPRTLIVHVSNLRKKIEPNPADPKYIITVRGVGYKF 228 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 127/221 (57%), Gaps = 2/221 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LIV+D++ I FL+ L +G V + + L + K DLI++D+ +P DG E Sbjct: 5 ILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDGFEA 64 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 I+ +R+ + +P+I L+A+ + DKI +G DDY++KPF + EL R+ L+R S Sbjct: 65 IKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVSTGV 124 Query: 124 AP--DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + L+K D+ ++L +++GE+E+ LTP EF +L +L N G+V +L +VW Sbjct: 125 VEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELYERVW 184 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 G +E+ + L ++ +LR+KL ++ T G+GY+ Sbjct: 185 GQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYK 225 >UniRef50_A9WI76 Response regulator receiver n=2 Tax=Chloroflexus RepID=A9WI76_CHLAA Length = 225 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 133/220 (60%), Gaps = 3/220 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LIV+D+ I + +L G + A + L + + PDL++LDL +P GI Sbjct: 5 ILIVDDDPGIVAAITPSLRAQGYNIAIAHDGESALQKFSHLVPDLVLLDLVMPSLHGIAV 64 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + +RQ + P+IV+S + E+D + ALD GADDYL KPF + EL AR+R LRR + Sbjct: 65 CQRIRQQRSTPIIVISVKGAEADIVTALDNGADDYLVKPFRLSELLARIRAVLRRGRSEQ 124 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 +++ +D+ +D R++ R E ++LTPIE+ +LA L+ + V+T RQ++ +VWGP Sbjct: 125 T---VIQCADLVIDTNRRIVQRQGETINLTPIEYAVLAELVAHRDGVVTARQIVQRVWGP 181 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + Y++ + LR K+E DP+ PR+ ITE +GYRF Sbjct: 182 QYTDSTDYVKGVIRRLRVKIEPDPSHPRYIITEPHVGYRF 221 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 V +VED+ I R +R LEG G V T + E+ P+L +LD+ +P DG+E Sbjct: 4 TVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADGLE 63 Query: 63 FIRDLRQWSAV---PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 R +R ++ PVI L+A++ E+DKIA LD GADDY++KPF EL AR++ LRR Sbjct: 64 ICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRRF 123 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 P +V D+ +D A + V T EFRLL L + G+V T+ QLL+ Sbjct: 124 ERPLPP-AVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLLDA 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VW + +Y+ +R+K+E++P PR+ T G GYRF Sbjct: 183 VWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRF 226 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 133/221 (60%), Gaps = 3/221 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++LIVEDE+ I R L+ LE +G V GL AA L++LD+ LP G+E Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 63 FIRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R LR+ S PVI+L+AR DK+ LD GA+DY++KPF I EL AR+R ALR++ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 TTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T + + D+ V+ R + RG++EV LTP EF LL +L + +VLT+ Q+L+ V Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 WG + + ++ + +Y+ ++R+KL+ P + T G+GY Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKLDY-PYEKQLIHTIRGVGY 224 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 128/218 (58%), Gaps = 4/218 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL++EDE+ I RF+ L +G A GL + PDL+ILDL LP DG+E Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R +R+ S P+I+L+A+ DK+ LD+GADDYL KPF I EL AR+R LRR + Sbjct: 67 ARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPAV 126 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 + V+ +D+ ++L R I RG V L+ EF LL +L N GKV ++ ++ +VW P Sbjct: 127 TGE--VRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-P 183 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 S+ + +Y+G+LR+KLE+ R R T G+GY Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGER-RLIHTVRGVGY 220 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+DEQ + + + + L G +A T + + EA PD+++LDLGLP+ DG+E Sbjct: 43 VLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLEV 102 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R +R +S +++L+AR E DKI L GADDY++KPF I EL R+ LRR +T Sbjct: 103 CRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTST 162 Query: 124 AP----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 P PL+ D+ +D A + GE V LT EF LL L G+VLT+ L+ + Sbjct: 163 TPPQVTTPLI-VGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFI-TETGIGYR 222 VW V + +++G+LR+KL D R R FI T G+GYR Sbjct: 222 VWDTTWVGDERIVDVHIGNLRRKLGTD-TRGRGFIDTVRGVGYR 264 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+DE I +++ L +G V A + L KPDLI+LD +P+ GIE Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R++R+ S +P+I+L+A++EE DK+ + G DDY+ KPF + EL AR++ L+R A Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEAK 123 Query: 123 TAPDPLV-KFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T + +V D+T+ R + + + LTP EF+LL L N GK ++ +LL Sbjct: 124 TINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYAI 183 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + ++ +LR+K+E+DPA P + T GIGY+ Sbjct: 184 GEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKL 225 >UniRef50_C8WRL6 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL6_ALIAD Length = 221 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 137/221 (61%), Gaps = 8/221 (3%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLIVEDE + FLR LE G+ V A + L A + DL+++D+ LP G++ Sbjct: 3 VLIVEDEPGLVEFLRLELELSGVEVDVAMDGETALERARSEPYDLLLVDIVLPGMSGVDL 62 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R++R++S VP+++L+AR +D++ LDAGADDYL KPF I EL AR+R RR+ Sbjct: 63 CREVRRFSNVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEELWARIRAIRRRYEVNG 122 Query: 124 APDPLVKFSDVTVDLAA-RVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 AP +F + TV L A RV++RG +EV LT E+ LL LL N + ++++LL +VWG Sbjct: 123 AP---FRFGEATVHLDAHRVVYRG-QEVDLTAREYDLLLYLLRNVNRTCSRQELLERVWG 178 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 A ++ + +Y+G+LRQKL DP R R+ T G GYR Sbjct: 179 FQAPGDTNVVDVYIGYLRQKL--DPER-RYIKTVRGQGYRL 216 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 130/218 (59%), Gaps = 5/218 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+++D+ I L+ AL +G RV A +G+ A P+L+ILD+ LP DG E Sbjct: 5 VLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWEI 64 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + R+ + P+++LSAR E K+ L+ GADDYL KPF + EL AR++ LRR Sbjct: 65 CQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRR---I 121 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 + +++FSD+ +DL AR + R + LT EF LLA +++ +VLT+ Q++++VWG Sbjct: 122 TANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL 181 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 + S+ L +Y+ LRQK+E +R H T G+GY Sbjct: 182 DFTGGSNVLEVYINMLRQKIEDYGSRIIH--TVRGVGY 217 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/224 (41%), Positives = 126/224 (56%), Gaps = 9/224 (4%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+DE I +R AL G V A T Q L AA +PDL+ILD+ LPD DG E Sbjct: 23 VLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFEV 82 Query: 64 IRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R LR A V V+ L+AR DKI L G DDY++KPF + EL AR+R LRR + Sbjct: 83 CRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRR-TRR 141 Query: 123 TAPDP-----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 AP+P L+ ++DV +D A ++ R ++ V L+P EF LL L+N +VL++ Q+L Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 VW + + Y+ +LR+KL Q P T+ G GY Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQH--GPPLIHTQRGFGY 243 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+V+D+ I+ + L +G R+ A T + A + +PDLIILD+ LPD DG E Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R +R + VP++ LS R ++ D+I G DDY++KPF L A+++ +RR+ + Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 124 APDPLVK------FSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 F ++ +D + R + + L EF+LL L NAG+V + L Sbjct: 126 GSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLF 185 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +WG ++ + +++ +LR+K+EQDPARP + IT G+GY+F Sbjct: 186 DSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKF 231 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 136/229 (59%), Gaps = 7/229 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLP-DGDGI 61 ++L+VEDE+AI FLR L +G RV A+T R L PDLIILD+ LP D DG+ Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 62 EFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R +R +P+++L+AR E +D++A LDAGADDYL KPF EL AR+R LRR Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 121 ATT----APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 A D + +F+D+T+D +R +RG+ + LT E+ LL + + + +VLT+ + Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 + +VWG + S+ L +Y+ +LR+ LE PR T G GY L Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAG-GEPRLLQTVRGAGYALRL 233 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LIVED+ I ++ +L +G + +A + + ++I+D+ +P DGIE Sbjct: 6 ILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIES 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR----- 118 +R +R+ S VP+I+LSA+ E+SDKI L GADDY+ KPF + EL AR++ +RR Sbjct: 66 MRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYYN 125 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + + + + ++ DV D+ + +G +E+ LT E ++L + N +V T+ Q+ + Sbjct: 126 ETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQIYD 185 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + + ++M LR K+E DP P+ T GIGY+ Sbjct: 186 SVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 NVLIVEDE I ++ L T +L PD +ILDL LPD DGIE Sbjct: 5 NVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDCDGIE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R+ S V +++LSAR ++DK+ L GADDY++KPF + EL AR+ LRR Sbjct: 65 ICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQDRW 124 Query: 123 TAPDPLVK----FSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + K ++ ++ + R + + L+ EF LL L N +V ++ QLL+ Sbjct: 125 LQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKSQLLD 184 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + + +Y+ +R+K+E +P+ P + T G+GY+F Sbjct: 185 AVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 6/228 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M NVLI++DE I + L +G +VF+A G+ K +++LD+ +P DG Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 + +R+ +P+I+LSA+S++ DKI L GADDY+ KPF EL AR++ +RR+ Sbjct: 61 FQVCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 120 -----SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 S + +++F D+T++ + +E+ LTPIE+ +L +L NN G V + Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAE 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + +VW E ++ + +++ LR+K+E++P P+ T G+GY+ Sbjct: 181 DIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYK 228 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 132/228 (57%), Gaps = 11/228 (4%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL--LEAATRKP-DLIILDLGLPDGDG 60 +LIVED+ I L ++ E E++ GL LE A K DLI+LDL +P +G Sbjct: 10 ILIVEDDLEIVDLLEIHMKDLNA---EVESVNDGLSALEKAQHKDFDLILLDLSIPKLNG 66 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E R+LR+ P+I+++A++EE DK+ L+ GADDY++KPF I EL+AR + +RR Sbjct: 67 VEVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSD 126 Query: 121 ATT-----APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 A + + F D+ V++ R + +++ L+P EF LL +L N G+ ++ + Sbjct: 127 AANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSE 186 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+ +WG N + H + ++ LR K+E D P + +T GIGYRF Sbjct: 187 LLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRF 234 >UniRef50_C1A8B6 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8B6_GEMAT Length = 245 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 129/232 (55%), Gaps = 9/232 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++L+VED + +R+ LE +G +V A T + GL A +R LI+LDL LPD DG Sbjct: 13 SILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLMLPDIDGFR 72 Query: 63 FIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R+LR+ PV++L+A +E+DK+ GADDY++KPFG+ E AR++ LRR Sbjct: 73 VLRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRRSRT 132 Query: 122 --------TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 T D +F +V +DL+ R + V L P E+ LL L+ G + ++ Sbjct: 133 AKPAHDVPTVQADNTRRFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIASR 192 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +LL +VWG + S + +M LR+KLE DP+ PR +T GYR + Sbjct: 193 EELLREVWGYDDSVVSRTVDTHMAELRRKLETDPSEPRWLLTVRKTGYRMAM 244 >UniRef50_B1XPE6 Two-component response regulator; transcriptional regulatory protein n=21 Tax=Cyanobacteria RepID=B1XPE6_SYNP2 Length = 267 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 2/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +V I+E +R L L+ +++A L + P L++LD LPDGDG Sbjct: 3 LISVAIIEGNPHLRSLLGWHLQQANYAIYQAANLNQSRRVFEQHMPALVLLDSELPDGDG 62 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E R LRQ + +++LSA++ E D +A L AGADDYL+KPFG+ EL AR+ RR Sbjct: 63 LELCRWLRQNTQAIILILSAKNTEKDVVAGLKAGADDYLTKPFGMQELLARVEALTRRIR 122 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 A +AP L + ++ +DL R + + LTP EF LL VL G+ L++ +LL + Sbjct: 123 AVSAPLQL-DYGELRIDLVQRRVQFRGLYIDLTPQEFSLLYVLAQANGEPLSRSELLRRA 181 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 W P+A+++ + ++ LR+K+EQDP +P T +GYRF L Sbjct: 182 W-PDAIDNPRTIDTHVLSLRKKIEQDPRQPNLIQTVRNVGYRFNL 225 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 6/224 (2%) Query: 1 MTN--VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M+N +L+VEDE + +F+ L+ +G V GL A PDLI+LD LP Sbjct: 1 MSNPCILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGI 60 Query: 59 DGIEFIRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 G++ + LRQ S VP+I+L+A+ + SD++A LDAGADDY+ KPF + EL AR+R LR Sbjct: 61 SGLDICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLR 120 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R+ PD L++F D++++ R + RG + LT EF LL L+++ +VL++ Q+L Sbjct: 121 RNHEED-PD-LLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQIL 178 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 +VWG + + S+ + +Y+ +LR KLE + + R T G+GY Sbjct: 179 ERVWGYDFMGDSNIIEVYVRYLRLKLEAEQEK-RLIQTVRGVGY 221 >UniRef50_C1SI97 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI97_9BACT Length = 236 Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 8/227 (3%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+V+D+ I LR L+ +G V A GL A PD+I+LDL LPD +G + Sbjct: 9 ILVVDDDPDILEVLRLLLDLEGYNVITASNGITGLALARENTPDMIVLDLNLPDINGQQI 68 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + +R +P+++LSAR SDK+ L+ GADDY++KPF EL AR++ LRR Sbjct: 69 CKIIRSELDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSEKNN 128 Query: 124 AP------DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 D L+ F +T+D A+R + +E+V LTP E+ +L + G VL++ ++ Sbjct: 129 TSQEAGTGDVLI-FHHMTIDKASRQVFIKDEKVALTPKEYEILLYFVGKTGHVLSRDDIV 187 Query: 178 NQVWGPNAV-EHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 N +WG N++ S L +++ +LRQK+E +P P T +G+GY+ Sbjct: 188 NDIWGKNSIYSWSRSLDVHIKNLRQKIEINPKNPDIVKTVSGVGYKI 234 >UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostridiales RepID=C9XR57_CLODC Length = 244 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 134/228 (58%), Gaps = 12/228 (5%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLII--LDLGLPDGDGI 61 +LI+EDE IR F+ L+ +G + EA T R +E T + D+ I LD+ LPD GI Sbjct: 17 ILILEDEIGIRSFVSINLKREGYEIVEAGT-GREAIEKMTTENDITIALLDVMLPDISGI 75 Query: 62 EFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + +R+ + V +I+L+A+++E DKI +GADDY+ KPF I EL R+ LRR Sbjct: 76 EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRR-- 133 Query: 121 ATTAPDPLVKFSDVT-----VDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 D VK S++ +D+ R + + +E+ LTP EF ++ L++NA + L++ Q Sbjct: 134 -VAKDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQ 192 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +L++VWG N + + + + +R K+E DP++P++ T G GY F Sbjct: 193 ILDEVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCF 240 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 135/219 (61%), Gaps = 5/219 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRV-FEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VEDE + R+L+ LE +G E + L GL +A T + DLI+LD+ LP+ GIE Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLS-GLEKALTIEYDLILLDVMLPELSGIE 71 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R+ VP+I+++AR E D + LD+GA+DYL+KPF I EL AR+RV LR+ + Sbjct: 72 LCRRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 + +V + + AR + EEE+ LTP EF LL ++ N + +++ Q+L VWG Sbjct: 132 ANQEIVV--GRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWG 189 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 + + +++ + +Y+ +LR K+E DP+ + T GIGY Sbjct: 190 FDFMGNTNIVDVYIRYLRNKIESDPS-VKLIHTVRGIGY 227 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 3/221 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+V+D+Q+I LR LE D V A + D +ILD+ +P +G F Sbjct: 6 ILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGFAF 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R +R S VP++ LSARS + DKI L G DDY+ K GE+ AR++ LRR ++ Sbjct: 66 CRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASNQ 125 Query: 124 AP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 P + +++F +T++L R + + V LTP E+ LL + L + V + QLL+++W Sbjct: 126 PPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKLW- 184 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + V H +R+++ LR+K+E +P P++ + GIGYRF Sbjct: 185 -DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRF 224 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 131/218 (60%), Gaps = 6/218 (2%) Query: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 LIVED++ + L +G V A+ + L +A T D+IILD+ +P DG++ Sbjct: 6 LIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVKVC 65 Query: 65 RDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTA 124 + LR S +P+I+L+A+S+ DK+ L+AGADDY++KPF EL R++ LRR++ Sbjct: 66 KQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKVQE 125 Query: 125 PDPLVKFSDVTVDLAA-RVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 ++K D+T+DL +V ++G + ++LTP EF LL VL N K + + LLN+VWG Sbjct: 126 EKIVLK--DLTMDLKDFKVFYKG-KAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGI 182 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 + S+ + +Y+ ++R KLE P P+ +T G GY Sbjct: 183 ASDYDSNIVDVYIKNIRNKLEDKP--PKLILTIRGRGY 218 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 93/229 (40%), Positives = 132/229 (57%), Gaps = 11/229 (4%) Query: 1 MTNVLIVEDE----QAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLP 56 + VL+V+D+ + + R+LR A G V A L A T PDL++LDL LP Sbjct: 55 VARVLVVDDDALVSEVVDRYLRNA----GFDVDRAADGPTALRVAETTPPDLVVLDLMLP 110 Query: 57 DGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 DGIE R LR VPVI+L+AR++ESD+I L+ GADDY++KPF EL R++ L Sbjct: 111 GLDGIEVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVL 170 Query: 117 RRHSATT--APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 RR + T A +++ + VD AAR R + LT EF LLA LL G+ T+ Sbjct: 171 RRANETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRG 230 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +LL VWG + + S + +++ LR+K+E DP PR +T G+GYR+ Sbjct: 231 ELLEHVWGWSYGDPS-TVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRY 278 >UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CI50_9FIRM Length = 224 Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +L+VED+ + + AL + V A+++++ E + P L++LD+ LPDGDG Sbjct: 1 MTRILLVEDDLLLSEGISYALRKESYLVDCADSIEKAW-ECLNKGPSLVLLDVNLPDGDG 59 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 EF++ LR + VPV+ L+AR E D + DAG DDY++KPF I L ++ + L+ Sbjct: 60 REFLKRLRSANKVPVVFLTARDSEKDMLEGFDAGCDDYITKPFPISVLSRKIGLLLK--G 117 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 L D D A + + V LT E RLL L N G+VLT+ Q+L V Sbjct: 118 VAYLDKSLYYQGDFVYDYAKKELTIQNVPVKLTATELRLLEYFLKNRGQVLTREQILENV 177 Query: 181 WGP--NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 W N V+ L + + LR+K+E+DP PR+ +T GIGY++ Sbjct: 178 WDSYENFVDERT-LNVNVRRLREKIEKDPKNPRYIVTMFGIGYKW 221 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 134/232 (57%), Gaps = 13/232 (5%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAET--LQRGLLEAATRKPDLIILDLGLPDGDG 60 ++LIV+D++ IR L + LE +GMR A R +LE + DLI+LDL LP DG Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGS--VDLIVLDLMLPGEDG 63 Query: 61 IEFIRDLR--QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 + R+LR +W +PV++L+AR+EE+D+I L+ GADDYLSKPF + EL AR+R LRR Sbjct: 64 LTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRR 123 Query: 119 ------HSATTAPDPLVKFSDVTVDLAAR-VIHRGEEEVHLTPIEFRLLAVLLNNAGKVL 171 + + P + F D +D AR ++ V L+ E+RLL V L++ +VL Sbjct: 124 ARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVL 183 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 T+ QLLN G +A + + + LRQ+L+ D PR+ T GY F Sbjct: 184 TRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVF 235 >UniRef50_B2V706 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=B2V706_SULSY Length = 224 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 132/224 (58%), Gaps = 3/224 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP-DLIILDLGLPDGD 59 M NV+++ED++ + L L + V E ++ L E + DL+ILDL LP+ D Sbjct: 1 MINVIMIEDDKELAELLTQYLAKFNISVKNFEHSKKALEELKKNQSYDLMILDLTLPEID 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 GI+ + L + +P+I+ SARS+++DKI AL+ GADDYL+KP+ EL AR++ LRR Sbjct: 61 GIDICKMLAKEGNIPIIISSARSDDTDKILALEIGADDYLAKPYNPRELVARIQAVLRRK 120 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + A + ++K + +D +I + E ++LT E+ LL++L+ N G+VLT+ +L+ Sbjct: 121 N--KAVEKVIKCGEFELDEEGYIIKKNGEPLNLTSAEYELLSMLIKNKGRVLTRDYILDN 178 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 N + + +G +R+K+ DP P++ I+ G GY+F Sbjct: 179 SIYLNYDSIDRTVDVIIGRIRKKIGDDPKNPKYIISVRGFGYKF 222 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M VLI +DE+ I L LE DG ++ A L + D+ I+D+ +P DG Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +R +R+ +PVI+LSA+SE DKI LD GADDY++KPF E+ AR++ LRR++ Sbjct: 61 YHLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 121 ATTAPDP-----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + + ++ + +++ +++ EV+LT E+++L LL N GKV T++Q Sbjct: 121 KSMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQ 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VW + + +++ +LR K+E D P + T G+GY+ Sbjct: 181 IFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKL 228 >UniRef50_Q21BK9 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21BK9_RHOPB Length = 242 Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 + IV+DE I+ L + + G V AET + A + D I+LD+ LPDGDG+ Sbjct: 14 IAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRLPDGDGLTL 73 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +RD+R S VPVI++++R+EE+D+I L+ GADDY++KPF E+ AR++ LRR A Sbjct: 74 MRDIRADSDVPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRRTRAVA 133 Query: 124 AP---DPLVKFSDVTVDLAA-RVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 P L +F+ +DL R+ E + LT EF LLA L+ + G+++++ LL+ Sbjct: 134 DPGRGKRLRRFAGWCLDLENHRLTSASGEPMRLTSAEFELLAALVRHPGRIMSRNDLLDV 193 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + + + +G LR+K+E DP +P+ +TE G+GY F Sbjct: 194 MSSREWDSNDRTVDVLVGRLRRKIEADPGKPQIIVTEYGLGYVF 237 >UniRef50_A9B2W4 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B2W4_HERA2 Length = 227 Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+V+D+ +R + AL G V +A + L + A +P+L+ILD+ +P DG E Sbjct: 3 ILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVNMPGLDGFEV 62 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R +R S VPV++L+ R+ E D I LD GADDYL+KPF L AR+R LRR Sbjct: 63 CRRIRAQSIVPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRRVGGER 122 Query: 124 APDPLVKFSDVTVDLAARVIHR-GEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 P PL + D+ +D + + R G V LT EFRLL LL NAG+V++ Q+ VWG Sbjct: 123 -PTPLQQ-GDLVLDTDRQSVSREGLGFVALTNREFRLLQYLLANAGRVVSNEQVTIHVWG 180 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 + + L+ + LRQK+E +P P++ +T +GY Sbjct: 181 HHGIGDRTLLKQLVHRLRQKIEPNPTEPQYLVTIPSVGY 219 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 132/227 (58%), Gaps = 4/227 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+++DE AIR L+ +G +V AE +RG++E + +PDL++LDL LPD G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 + +++ + S +PVI++SA+ E DK+ L+ GA+DY++KPF EL AR++V LRR Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 119 HSATTAPDPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 H+ + K ++ ++ +V+ + ++ LT E+ +L L K+ T+ +L Sbjct: 121 HNDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDEL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L VWG + S + + + LR+K+E+D P++ T G GY+ Sbjct: 181 LEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQL 227 >UniRef50_A5GA68 Two component transcriptional regulator, winged helix family n=8 Tax=Desulfuromonadales RepID=A5GA68_GEOUR Length = 243 Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++L+VEDE + R + LE + RV ET + L + DLIILD+ LP DG Sbjct: 7 HILLVEDEIHLARGICFNLELENYRVSHVETGEDALERVRYERFDLIILDVMLPGIDGFA 66 Query: 63 FIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R++RQ A VPV++L+ARS+E D+IA L GADDYL+KPF + E R+ LRR SA Sbjct: 67 VCREIRQLDARVPVLMLTARSDERDRIAGLTGGADDYLTKPFNLNEFLLRVGGMLRR-SA 125 Query: 122 TTAPDPL---VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 P+P+ +F D V L + + E+ LT +E ++L++ G+ + ++ LL Sbjct: 126 WYRPEPVEEGYRFGDNDVFLLSYRAKTPQGEIDLTDLEVKMLSLFFQKEGEAIPRKTLLE 185 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG ++ + L ++ LR+ E DPA+P +F T G+GYRF Sbjct: 186 SVWGYSSDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGYRF 230 >UniRef50_C0D8Y6 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=C0D8Y6_9CLOT Length = 243 Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 137/232 (59%), Gaps = 18/232 (7%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPD-GDGIE 62 VLIV+D+ AIR+ L +EG+G + A + Q + A RK DLI+LD+ + DG + Sbjct: 16 VLIVDDDPAIRKLLTKVVEGNGFKSMTAASGQEAVALAQNRKFDLILLDIMMNGVDDGFD 75 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR--- 118 IR LR + +P+++LS R+E+ D + LD GADDY++KPF L A+++ +RR Sbjct: 76 AIRSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRRNKK 135 Query: 119 -----HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 H+ TA P ++S++T++ + E+ + L+ E ++ + ++N G+V T+ Sbjct: 136 AAYNAHNFITA-GPF-RYSNMTLEF-----FKNEQLIPLSSKENVMMKLFISNVGRVFTK 188 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 QL VWG N++ + + +Y+ HLR K+E +P PR+ T G+GY+F + Sbjct: 189 EQLYELVWG-NSIVDENAIMVYISHLRNKIEDNPKSPRYIKTVWGLGYKFTV 239 >UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNC3_CLOBO Length = 231 Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 128/220 (58%), Gaps = 2/220 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL++EDE +I +F++ L+ V +A + + G+ + T P ++ILD+ LP DG + Sbjct: 7 VLVIEDELSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGIDGFKV 66 Query: 64 IRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 LR+ V +I+L+A ++ DKI L+ GADDY+ KPF EL AR+ +RR S + Sbjct: 67 CEILRKNHPKVGIIMLTALGQDVDKIKGLEYGADDYMIKPFNPLELAARVTSLIRRMSFS 126 Query: 123 TAPDPLVKFSD-VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + S+ VDL +++ ++ EE+++LTP EF LL + + N G L++ +LL+ W Sbjct: 127 NDNSSRILISEPFKVDLNSKIAYKNEEKLNLTPKEFLLLKIFIENIGISLSRDKLLDLAW 186 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 G N V + + + LR KLE DP+ P++ T G GY Sbjct: 187 GYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGTGY 226 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 132/228 (57%), Gaps = 8/228 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP-DLIILDLGLPDGD 59 M +L+ EDE AIR F+ L+ G VFEA T R + A R+P D+++LD+ +P+ D Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEA-TNGREAVTAFDREPFDVVLLDVMMPEMD 59 Query: 60 GIEF---IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 G E IRDL + V +I+L+AR+ E DKI L GADDY++KPF GEL AR++ L Sbjct: 60 GFEACAAIRDLDE--NVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALL 117 Query: 117 RRHSATTAPDPL-VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 RR D +K +DLAA+ + + + + LTP E+ L+ L+ N VL++ Sbjct: 118 RRVEKVKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDA 177 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+ VWG N + + + LRQK+E DP+ P + T G GY++ Sbjct: 178 LLDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKW 225 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 135/236 (57%), Gaps = 17/236 (7%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRV------------FEAETLQRGLLEAATRKPDLI 49 + +L+VEDE IR + L+ +G V F +++ + G + T PDL+ Sbjct: 24 SRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAG---SVTENPDLV 80 Query: 50 ILDLGLPDGDGIEFIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGEL 108 +LDL LP +G++F R LR Q VP+++LSA+ E+D++ L+ GADDYL+KPFG EL Sbjct: 81 VLDLMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTREL 140 Query: 109 QARLRVALRRHSATTAPDPLV-KFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNA 167 AR R LRR A P V ++ + + + + E+ L+P EFRLL + + + Sbjct: 141 VARCRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHP 200 Query: 168 GKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +V ++ QLL ++WG + + S + +++ LR+K+E +P+ P + +T G GYR Sbjct: 201 RRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AEE3 Length = 238 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 132/229 (57%), Gaps = 10/229 (4%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRV---FEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 +L+++DE+ I + L +G V + A TL R L K DL+ILD+ +P DG Sbjct: 13 ILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDL---EKFKIDLVILDMMMPGVDG 69 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 I+ + +R+ +PVI +SA++ + DKI L GADDY++KPF EL AR++ LRR+ Sbjct: 70 IQALEMIREKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRRYQ 129 Query: 121 ATTAP----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + P + +++ +D+ +D +++ V +T IE+ +L +L ++ G V + + Sbjct: 130 VYSKPIGVDNSIIQANDLLIDTNKKMVSVDNRPVAVTKIEYEILVLLASHPGTVFSTEDI 189 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 ++W A ++ + +++ LR+K+E+ P PRH IT GIGY+F L Sbjct: 190 YTKIWHEEATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGYKFEL 238 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 3/221 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+ +D+ + L AL +G V +A Q L A +++PDL+ILD+ +P DG Sbjct: 7 ILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFAV 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +R SAVP+++L+AR + DK+ GADDY++KPF + EL R+ LRR T Sbjct: 67 CGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRR--MPT 124 Query: 124 APDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 P+ ++F + ++ + R +H G+ LTP EF LL ++ ++ G T+ LL +VW Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +A + + + LR+K+E +PA+PR T GIGY+F Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKF 225 >UniRef50_Q1J251 Two component transcriptional regulator PhoB n=5 Tax=Deinococci RepID=Q1J251_DEIGD Length = 229 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 7/226 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M++V+++EDE +R LR LE G+RV E++Q + R D ++LD LP G Sbjct: 1 MSHVVVIEDESTVREVLRFHLERAGLRVSALESVQGA--QETLRGADALVLDWMLPGESG 58 Query: 61 IEFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 + ++R LR + +PV++L+AR+ E++++ L++GADDYL+KPF EL AR+R LR Sbjct: 59 LAYLRRLRGDPELRRLPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVRALLR 118 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R T P L +++DL A +HLT EF LLA L NAG+V T+ +LL Sbjct: 119 RAQPDT-PQQL-SHGPLSMDLGAAEARLAGIRLHLTRREFDLLAFLTQNAGRVYTRTELL 176 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++VWG + + + ++ LR L DPARPR T G GYR Sbjct: 177 DRVWGADFLGGERTVDQHVTQLRAHLGDDPARPRFLETVRGKGYRM 222 >UniRef50_C6LEL9 DNA-binding response regulator RegX3 n=3 Tax=Clostridiales RepID=C6LEL9_9FIRM Length = 234 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT + +ED++A+ + ALE +G ++ T + G A R+PDL++LD LPDGDG Sbjct: 1 MTQIFFIEDDEALAEGISFALEREGYQISCFSTCRAGREAIAERQPDLVLLDWNLPDGDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + R++ + VPV++++AR E D++ L++GADDY++KPF + L+AR+ LRR Sbjct: 61 LALCREIAGTAGVPVLMITARDMEIDQVMCLESGADDYIAKPFSLAVLKARIAALLRRRG 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + L+ D+ + + + E+ L+ EF+LL L N +VL + Q+L +V Sbjct: 121 GQDSSGWLIS-GDIRLQEKEMKAYLKDRELDLSLTEFKLLKYFLENKNQVLLKEQILARV 179 Query: 181 W--GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 W G + VE + L + + LR K+E+D + PR+ T G+GY Sbjct: 180 WDSGGSFVEE-NTLMVNIRRLRTKVEEDASHPRYIKTVHGMGY 221 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 132/228 (57%), Gaps = 8/228 (3%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP-DLIILDLGLPDGDGIE 62 +LI++D++A++ LR E + V A T G+ A P D+++LD+ LPD DG E Sbjct: 5 ILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDGFE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 ++ +R S VPVI+L+AR +++D+I L+ GADDY+ KPF EL AR++ LRR +A+ Sbjct: 65 TLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRATAS 124 Query: 123 TAPDPLVK-------FSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 P+ F V +D A RV+ + E+ +T +E +L L+++ G LT+ + Sbjct: 125 AEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPLTRDR 184 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+ G + + +++ +R+KLE DP+ PR+ T G GY + Sbjct: 185 LLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMW 232 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 128/229 (55%), Gaps = 4/229 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVED+ I + L +G V A + GL A + DLI+LD+ LP DG Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 R+LR++ VPV++++AR EE D + L GADDY+ KPF EL AR+R + R+ Sbjct: 61 FAVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 121 ---ATTAPDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 A+ P+ +VK + + L A + ++EV T EF LLA L + V ++ L Sbjct: 121 RILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREAL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +VWG A+ S + +++ +R+K+E+DPA PR+ T G GYRF L Sbjct: 181 FERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFRL 229 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 129/228 (56%), Gaps = 10/228 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M VLIVED++ IR+ L+ L + + E + K DL ILDL LP +G Sbjct: 1 MERVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNG 60 Query: 61 ---IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 ++FIR +PVI+LSA+ +E DKI LD GADDYL+KPF + EL AR+R LR Sbjct: 61 YDILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLR 120 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R + + L++ + +DL R++ EE V LT EF LL L N G+ +++ +L+ Sbjct: 121 R---SKKDERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELI 177 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITET-GIGYRFM 224 NQ+WG + + S L +++ LR+KL + A H+I +GYR + Sbjct: 178 NQIWGYDFIGESRTLDVHINSLRKKLGNEYA---HWIQSVRQVGYRLV 222 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 131/227 (57%), Gaps = 8/227 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR-KPDLIILDLGLPDGD 59 M +L++ED+ + L+ LE +G + T +G +E + +PDLI+LD+ LPD D Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHT-GKGAIELCRQVRPDLILLDIMLPDSD 64 Query: 60 GIEFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 G++ + +R+ +A+PVI L+AR+ E+D+I L+ GA+DY+ KPF + EL AR+++ Sbjct: 65 GLDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQF 124 Query: 117 RRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 R + P L++ V +D + + + LT EFRLL L+N G V ++ QL Sbjct: 125 RNQAT---PARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQL 181 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LN VWG + + +Y+ LRQK+E+DPA P + G GY F Sbjct: 182 LNAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTF 228 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 V IVEDE I L+ LE G RV A+ + GL + PD +ILDL LPD G E Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R S VP+++LSA+S E D+I + GADDY++KPF E+ RL LRR + T Sbjct: 64 ICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRR-TRT 122 Query: 123 TAPDPLVKFS--DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + F+ ++ +D + + E + LTPIEF ++ ++ + G+V ++ LL ++ Sbjct: 123 LNKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKI 182 Query: 181 WGPNAVE-HSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + E + + +++ +LR+KLE + +P++ +T G+GY+F Sbjct: 183 QEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 128/224 (57%), Gaps = 3/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+V+DEQ I ++ LE DG V A + L + LI+LDL LP G E Sbjct: 7 ILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEEV 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +R S+VP+I+L+A++EE +KI + GADDYL+KPF + EL R+R LRR Sbjct: 67 CNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYRDF 126 Query: 124 AP-DPLVKFS--DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +P ++ F+ D+ VD+ V+ + V+LT EF++L V L+N +V ++ +L+ + Sbjct: 127 SPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVEKA 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +G N + Y+ ++RQK+E + P + T G+GY+F+ Sbjct: 187 FGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFI 230 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 8/224 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 NVL+VED+ +IR L +AL G V A+T Q + EA +PDLI+LD+GLPD DG Sbjct: 14 NVLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFA 73 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 R LR + PV+ L+AR++ D+I L +G DDY++KPF + E+ R+R LRR Sbjct: 74 VTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDM 133 Query: 120 --SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 S T PL ++ D+ +D + R + L+P EFRLL LL +V+ ++++L Sbjct: 134 PPSGGTRRPPL-RYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEIL 192 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 ++VW + + + Y+ +LR+K+ D P+ T G+GY Sbjct: 193 SEVWHYDFAGDARIVDTYVRNLRRKI--DRFEPQLIQTVRGVGY 234 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 134/228 (58%), Gaps = 9/228 (3%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP-DLIILDLGLPDGDGIE 62 VL+V+DE+ I R L L +G V E T R L A R+P D I+LD+ LP DGIE Sbjct: 12 VLLVDDEEPILRLLDYHLAKEGF-VTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LR + S P++++SA+S+E DK+ AL+ GADDY++KPF EL AR++ LRR A Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 122 TTAPD------PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + D P S + + +++ +E + LTP E+ LL L+ + LT+ + Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL ++WG + + + + +++G LR+K+E +P P++ T G GY+F Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 3/219 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+VED++ I FL AL G ++ A +G A D II+D+ LP DG+E Sbjct: 34 VLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGLEI 93 Query: 64 IRDLRQWSAV-PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 ++ LR + PV++LSA+ SD+++ L+ G DDYL+KPF + EL AR+ +RR Sbjct: 94 LQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSKVN 153 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 L K D+ +DL +R + RG+EE L P EF LL L+ N G+V+T+ ++L VWG Sbjct: 154 QETVQL-KAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVWG 212 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 N V ++ + +++ LR+KLE+ P +PR T GY Sbjct: 213 YNFVPATNVVEVHICRLREKLER-PNKPRLLQTFRKAGY 250 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 + ++ED+ I R ++ L+ G + T L +A + P L +LD+ +P GDG++ Sbjct: 4 TIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDGLD 63 Query: 63 FIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 R LR S++P+I ++AR+ E+D++ L+ GADDY++KPF EL AR++ LRR Sbjct: 64 VCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRRF 123 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + P L+ F DV +D +A + E T EFRLL L + G+V ++ LL+ Sbjct: 124 ERPSTPS-LISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLLDA 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + +Y+ +R+K+E DP PR T G GYRF Sbjct: 183 VWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRF 226 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 4/221 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 + IVEDE+ I RFL+ LE +G E R DL++LD+ LP DG+ Sbjct: 7 IFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMTI 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + +R+ S++P+I+L+A+ E DK+A LD GADDY++KPF I EL AR+R ALR+H Sbjct: 67 CKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVPDN 126 Query: 124 APDPL---VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 PL ++ ++ + + E VHLT E+ LL ++ N VLT+ Q+L +V Sbjct: 127 GGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILEKV 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 WG + ++ + +Y+ +LR KL+ D ++ T G+GY Sbjct: 187 WGYDYSGDTNVVDVYIRYLRAKLD-DRFHEKYIYTVRGVGY 226 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 132/232 (56%), Gaps = 10/232 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +L+V+DE+ I +R L G + + T+ PDLI+LDL LPD DG+ Sbjct: 4 TKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDIDGL 63 Query: 62 EFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 E R +R + P+I+L+A+SEE+DK+ L GADDY++KPFG+ EL+AR+R LRR Sbjct: 64 EVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRR 123 Query: 119 ------HSATTAPDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVL 171 +A TA D +++ D+T+D+ ++ + +E + T EF++L L + VL Sbjct: 124 VMDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLEHVL 183 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++ LL +V G + + +++ ++R+KL P++ T G+GY+ Sbjct: 184 SRSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKM 235 >UniRef50_Q3ZA31 DNA-binding response regulator n=3 Tax=Dehalococcoides RepID=Q3ZA31_DEHE1 Length = 232 Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 131/227 (57%), Gaps = 12/227 (5%) Query: 4 VLIVEDEQAIRRFLRTALE--GDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +LI+ED+ ++ + + +R+ EA + + GL T KPD IILD+GLPD G Sbjct: 3 ILIIEDDAQTTEIVKLSFKLGWPDVRLLEASSGESGLAMVETAKPDAIILDIGLPDISGY 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-HS 120 E +R +R +S +PVI+L+ R+EESD + AL GADDYL KPF EL AR++ RR HS Sbjct: 63 EVLRQIRLFSELPVIILTIRNEESDIVKALSLGADDYLVKPFRQMELLARIKAISRRLHS 122 Query: 121 ATTAPDPLVKFSDVTVDLAARV--IHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 P+ ++F V +++ ++ + LT IE ++L L+ + G+ + + Sbjct: 123 ----PEVDLEFECGPFHFGQSVTKLYKNDKPIRLTNIEGQILYYLMRSNGRYIYNETIAQ 178 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 ++WG NA E +R+ + HLR+K+E +P+ P+ I G GY F+ Sbjct: 179 KIWGENAYER---IRVNIRHLREKIEDNPSNPKFLINIPGKGYMFIC 222 >UniRef50_C7LNV6 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LNV6_DESBD Length = 229 Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/210 (39%), Positives = 120/210 (57%), Gaps = 6/210 (2%) Query: 17 LRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVI 76 ++ LE DG V A GL PDL++LDLGLPD DGI+ + LR+ S VPVI Sbjct: 19 VKANLELDGFMVLSATDGASGLAAVQANAPDLVLLDLGLPDIDGIKVCQTLRRDSEVPVI 78 Query: 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR--RHSATTAPDPLVKFSDV 134 +LSAR +DK+ L+ GADDYL KPF EL AR+R LR R S T + ++ Sbjct: 79 MLSARDTVADKLLGLECGADDYLVKPFNALELSARIRTVLRRIRRSETATAQ---RNGNI 135 Query: 135 TVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAV-EHSHYLR 193 +D + +V LT EF LL + + + G+ LT+ + +Q WG + + HS + Sbjct: 136 ILDYRSHEATIQGRQVRLTRTEFSLLELFVAHPGETLTRDFIQSQNWGDSKLYSHSRAVD 195 Query: 194 IYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +++ LR+K+E++P PR +T G+GYRF Sbjct: 196 VHVQRLRKKIEENPQAPRIILTVAGVGYRF 225 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 9/229 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+D+ +I + L +G V +A + L D+ I+D+ LP DG E Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 63 FIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +R LR ++ PV+ LSA+ EE DK+ L+ GADDY++KPF I E+ AR++ RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 120 SATTA-----PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + P +V + +D+ + +++V LTP+EF LL L N GKV ++ Sbjct: 149 QLSAQEREERPKKIVA-KGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRD 207 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+++WG + + + +++ LR K+E+DP+ P++ IT G GY+F Sbjct: 208 VLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 131/227 (57%), Gaps = 5/227 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VED+ +IR L TAL G V A + + +A +R+PDLI+LD+ LPD DG Sbjct: 12 TVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFR 71 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS- 120 R+LR Q PV+ L+AR+ D+I L +G DDY++KPF + E+ R+R LRR Sbjct: 72 LTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGA 131 Query: 121 -ATTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A+TAP P ++++ +++D + + + L+P EFRLLA L + +VL + ++L Sbjct: 132 PASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQ 191 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +VW + + + Y+ +LR+KL+ A P T G+GY L Sbjct: 192 RVWRYDFSGDTRIVDTYVKNLRRKLDHGGA-PALLHTVRGVGYCLRL 237 >UniRef50_Q0ICD5 Two-component response regulator n=5 Tax=Synechococcus RepID=Q0ICD5_SYNS3 Length = 295 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 + VL+V+D+ + FL D + ++T + L ++ DL++LD LPD DG+ Sbjct: 65 SQVLLVDDDPELLSFLYEEFTSDKVTCTCSKTGSKALTLLRQQRFDLVVLDWNLPDFDGL 124 Query: 62 EFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 E + LR + PV++L+A + ++ ALD GADDY+SKPF + EL AR+R LRR Sbjct: 125 EICQRLRSSGNTTPVLMLTAHDDLDARVQALDYGADDYISKPFELRELHARVRARLRRGT 184 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 +A ++ D+ ++L R +HRGE ++ LT EF LL L+ + G+VL ++ +L Sbjct: 185 FAAAEKQKEQLELGDLRINLLKRAVHRGEHKLSLTQREFDLLCYLIGHHGEVLHRKNILE 244 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 VWG V + L +YMG+LR+K+E+ P P+ T GIG+ Sbjct: 245 GVWGAPFVGDPNTLDVYMGYLRRKVEK-PDHPQLLHTIRGIGF 286 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 L+VED+ I +R L + V A Q+GL A T+ +LIILDL LP DG E Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 65 RDLRQWSAV---PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R LR +A P+I+L+A++EESDK+ L GADDYL+KPF E AR+ LRR + Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 PD + F +T+ + ++ V LTP EF LL +L NAG+ L + QLL QVW Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITET--GIGYRF 223 G + + ++ LRQK+ Q P + +T G+GY+ Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQ--LEPGYTFVQTVWGVGYKL 230 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 V++V+DE+ I L L+ +G V+ A + +PD+++LD+ LP DG+E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R++R+ +P+I+L+A+ E DK+ L+ GADDY++KPF EL AR++ LRRH + Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123 Query: 123 TAPDP-----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 A D + D+ + A I + E++ LT EF L L + G+V+T+ LL Sbjct: 124 PAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 VWG + + + + LR+K+E DP+ P + +T G+GY Sbjct: 184 QTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+V+D+ ++R +R L+ G V A + L A RKPDL++LDL LP G+ Sbjct: 9 ARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGL 68 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-HS 120 E R LR+ VPV++L+A EESD++ L+ GADDY+ KPF EL R+ LRR + Sbjct: 69 EVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + A ++ + +DL AR E+ LT EF LL LL + G+ ++ +LL QV Sbjct: 129 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + +HS + ++M LR+K+E DPARP T G+GYR+ Sbjct: 189 WGWSFGDHS-TVTVHMRRLREKVEPDPARPVRINTVWGVGYRY 230 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 132/229 (57%), Gaps = 7/229 (3%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP--DLIILDLGLPD 57 M N +L+VED++ + + LR LE +G V A R LE R+P LIILDL LP Sbjct: 1 MNNPILVVEDDETLAQVLRKTLESEGYTVTLARD-GRAALELG-REPGLQLIILDLMLPR 58 Query: 58 GDGIEFIRDLRQWSAV-PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 G+E + LR + V P+I+L+AR ++DK+ L GADDYLSKPF I EL AR+ L Sbjct: 59 MSGLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVL 118 Query: 117 RRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 RR + + P V D+ +D + + +++ L+ EF++L L +AG+ + + ++ Sbjct: 119 RR-THQSKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKI 177 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +VWG + + + ++ LR KLE +P PR+ +T G GYRF++ Sbjct: 178 YQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVV 226 >UniRef50_C3CKG2 Two-component response regulator n=11 Tax=Bacillus cereus group RepID=C3CKG2_BACTU Length = 245 Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VED++A+ + +L +G V A +++ + DL ILD+GLPDG+G + Sbjct: 18 ILLVEDDEALGIAIEFSLRNEGYEVIRASSVKEAKHQFVHNTFDLSILDIGLPDGNGYDL 77 Query: 64 IRDLRQWSAVPVIV-LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 ++ + +I+ L+A EE++ + LD G DDY++KPF + EL AR++V LR+ ++ Sbjct: 78 CLYFKKKNENSIIIFLTALDEEANVVMGLDIGGDDYITKPFRVRELIARVKVQLRKQASL 137 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW- 181 P +++ ++ +D +++ E + LT +E++LL + N+ K L + +LL Q+ Sbjct: 138 ETPSQILRSENIRIDTNLVKVYKNCESITLTNLEYKLLLNFMKNSHKALKRDELLQQITE 197 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G N + L +Y+ LR K+E +P +P+ +TE G GYR+ Sbjct: 198 GENVFFDENTLSVYIKRLRAKVEDNPQKPQFIVTERGYGYRW 239 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 128/226 (56%), Gaps = 4/226 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +L+VED+ + L E G +V A GL A PDLIILD+ LP DG Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR--- 117 R + + + VP+++L+A +E+ +IA L+ GA DY+ KPF +GEL AR+R LR Sbjct: 61 FSVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNE 120 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R T + + L V +D +R + + E+ L+ EF LLA L++NAG L++ LL Sbjct: 121 RQRQTPSSNVLC-VGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLL 179 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + + + +++ LR+KLE DPA P T GIGY F Sbjct: 180 ERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 128/224 (57%), Gaps = 3/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L++ED++ I + L L +G +V A + GL A+ P L+++DL LP DG E Sbjct: 16 ILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDGFEV 75 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR---RHS 120 R +RQ S VP+IV+SAR + DKI +L GADDY++KPF EL AR++ LR R++ Sbjct: 76 CRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHRYN 135 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + ++ F +T++ R++ + + LT EF LL L G+V ++ QL N+V Sbjct: 136 GLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLYNRV 195 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 W + + + +++ ++R+KL PR T GIGY+F+ Sbjct: 196 WKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFI 239 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L++ED+ I +++ L + V + T + GL + DLIILD+ LP+ DG Sbjct: 5 ILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFTV 64 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---HS 120 +++R S VP+++LSA+ +E DK+ L GADDY++KPF + EL+AR+ ++R ++ Sbjct: 65 CKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKGYN 124 Query: 121 ATTAPDPLVKFSD-VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T + + ++ + +T+ + ++E+ LT EF LL VL N KV T+++L Sbjct: 125 KKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKKELYEN 184 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VW + +E ++ + +++ LRQKL+ + P++ T G GY+F+ Sbjct: 185 VWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFI 229 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLI+ED++ IR L+ VF A+ G+ P L++LD+ LP G E Sbjct: 5 VLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYEI 64 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---HS 120 + +R S P+I LS + + DK+ LDAGADDYL+KPF EL+AR++ LRR ++ Sbjct: 65 CQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKMNA 124 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P + ++ +DL + + +V L E +LL +L+ N V + ++ +Q+ Sbjct: 125 NRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYDQI 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + +++ +LR+K+E++P++P+ T G GY+F Sbjct: 185 WGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 125/227 (55%), Gaps = 9/227 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +LI+EDE+AI L L +G A T GL E KPDL++LD LPD G+ Sbjct: 4 TRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDRSGL 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + + + +P+++L+ARS+ +DKI L+ GADDY++KPF + E+ R+R LRR + Sbjct: 64 DICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLAQ 123 Query: 122 TTAP-----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 AP ++ F D+ V A R++ + E V LTP EF LL LL G++ T+ +L Sbjct: 124 AQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAEL 183 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L VWG + + ++ LR+KL+ T GIGY+F Sbjct: 184 LESVWGYDFPGDMRTVDTHIQRLRKKLDA----ADLITTVFGIGYKF 226 >UniRef50_C2V3X6 Two component transcriptional regulator, winged helix n=4 Tax=Bacillus cereus RepID=C2V3X6_BACCE Length = 233 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 126/224 (56%), Gaps = 1/224 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +L++E++ IR F+ ++ G V E +T ++ L D++ILD+ LP DG Sbjct: 3 MTTILVLENDITIRSFITLNMKRAGFNVLETDTGEKALELLEQNNVDIVILDVMLPGIDG 62 Query: 61 IEFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 + +R+ + + +I+L+A +E D++ L GADDY+ KPF I EL AR++ LRR Sbjct: 63 FRVCKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRRI 122 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 L+ ++L ++R E + LTP E +L L+ N+ K +++ +LLN+ Sbjct: 123 QKNKKDLELIHSGPFQLNLLLGELYRNEIVIDLTPTEHIILRYLMENSMKPISRNELLNK 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +WG N V ++ + + + LRQK+E P+ P +T G GYR+ Sbjct: 183 IWGINCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGYRW 226 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+DEQ + ++ ALE +G + A TL+ G T +P L ILD+ LPDG+G + Sbjct: 6 ILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGEGYQ 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R S +P++ LSA+SEE DK+ L G DDY++KPF E+ R++ LRR S Sbjct: 66 LCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVSMM 125 Query: 123 TAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 AP ++ ++ E + LT E LLA L N ++L++ L QVW Sbjct: 126 EAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQVW 185 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + + + +++ LR+K+E +P+ P + T G+GYR + Sbjct: 186 GESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 127/231 (54%), Gaps = 10/231 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +L+ +D IR LR L G+G V EA+ +L+ DLI+LD+ +P+ +G Sbjct: 3 TRILVADDNAEIREILRILLTGEGYEVIEAKDGNE-VLQLFDSSIDLIVLDIMMPNMNGY 61 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LR+ S VP++ L+A+ +SDK +GADDYL+KPF EL AR++ LRR+ Sbjct: 62 QTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQV 121 Query: 122 TTAPDP---LVKFSDVTVD-LAARVIHRGEE----EVHLTPIEFRLLAVLLNNAGKVLTQ 173 L D+++D L R + E EV LT IEF +L+ L+ N ++ + Sbjct: 122 YKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSA 181 Query: 174 RQLLNQVWG-PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 QL + W P ++ + +++ +LR+K+E+DPA P + T G GYRF Sbjct: 182 EQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRF 232 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T VLIV+DE+ I +R LE +G V A L D ++LD+ +P G Sbjct: 5 TTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGY 64 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-S 120 + +R +R+ VPV+ L+AR E+ DKI L GADD++ K GE+ AR++ LRR+ Sbjct: 65 DVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRR 124 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 AP ++ F + +D+ A + + V LT EF LL + + +V T+ QL ++ Sbjct: 125 GEPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRL 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG H+ + +++G LR+K+E+DPA PR+ +T G+GYRF Sbjct: 185 WGEFGDRHT--VTVHIGRLREKIEEDPANPRYIVTVWGVGYRF 225 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 127/231 (54%), Gaps = 8/231 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M N+LIVED+Q I + +R LE + + GL + PDLI+LDL LP DG Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 61 IEFIRDLRQW--SAVP-VIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 +E +RQ S P +++L+A+ EE D+I L GADDYL KPF EL AR+R LR Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 118 RHSATTAP-DPLVKFSDVTVDL----AARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 R P + + + VDL A+R +EE+ LT +EF LLA ++ G+V Sbjct: 131 RQLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWN 190 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + QL+ ++WG + + ++ LR+K+E DPA P T G+GY+F Sbjct: 191 RTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M ++L+V+DE + + LR +LE +G +V A + L + DLI+LDL LP DG Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + R++R P+I+L+A++++ DKI L+ GADDY++KPF EL AR+R LRR Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 121 ATTAPDPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A + D + D+ + R + LT E+ LL +L + G V T+++LL+ Sbjct: 121 AASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLD 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 VWG + + +++ +R+KLE+DP+RPR+ T+ G+GY Sbjct: 181 LVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGY 223 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 132/223 (59%), Gaps = 10/223 (4%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRG---LLEAATRKPDLIILDLGLPDGDG 60 VL+VEDE I RF+ ALE +G F + RG LL D +LD+ LP DG Sbjct: 48 VLVVEDELKIARFISRALEEEG---FTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDG 104 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 I +R LR+ ++P+++LSARSE DKI L++GADDYL KPF + EL ARLR +RR Sbjct: 105 ISVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRT 164 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + K ++T++L R + RG++++ LT EF +L +L+ G+V T+ Q+ + Sbjct: 165 AGIGL--SVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCER 222 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 VW + ++ + +Y+ LR+K+++ + + T G+GY+ Sbjct: 223 VWNYHFDPGTNLVDVYIQKLRKKIDEGEEQ-KLIQTVRGVGYK 264 >UniRef50_C0MDU1 Response regulator protein n=6 Tax=Streptococcus RepID=C0MDU1_STRS7 Length = 245 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 130/223 (58%), Gaps = 3/223 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+D+ A+ ++ L G + + A ++ G+ + + DLIILD+ LPDG+G Sbjct: 25 ILIVDDDIALSESIKEVLVSRGFKNISIAYSISEGIDIFSVSQIDLIILDVMLPDGEGYL 84 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ S VP++ L+A++ D+I LD+G DDY++KPF L R+ LRR A Sbjct: 85 LSKYVRKTSDVPILFLTAKNNPDDEIKGLDSGGDDYVTKPFLPKSLTYRIMALLRR--AY 142 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 L++ +D T+DL + + ++ LTP E ++L L N +++ + + +WG Sbjct: 143 RNESELIELTDCTIDLNNASVKKSDQNFSLTPTEIQILRKLFANINYIVSTETICDTIWG 202 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 ++ + L +++ ++R+K+E P++P+H IT G+GY+ ++ Sbjct: 203 LDSFGYEKSLMVHIRNIREKIEIIPSKPKHLITVKGLGYKLVI 245 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VEDEQ + + + L RVF A +L + ++ DL++LD LPDGDG+ Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 64 IRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + LR +PV++L+AR E+D + L++GADDY++KPF + EL+AR + LRRH + Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 L++F + +DL +R + + + LT EF LL L + +V ++ QLL+ VWG Sbjct: 143 APTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 H + ++ LR KL P T G+GY+F L Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFTL 245 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 125/227 (55%), Gaps = 11/227 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRG---LLEAATRKPDLIILDLGLPD 57 + + +VEDE+A+ LR LE +G FE +T+ RG + R PDL+ILD LP Sbjct: 2 LPKIAVVEDEEALSVLLRYNLEAEG---FEVDTILRGDEAEIRLQERLPDLLILDWMLPG 58 Query: 58 GDGIEFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRV 114 GIE R LRQ +P+I+L+AR EES+++ L GADDY+ KPF EL AR++ Sbjct: 59 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKA 118 Query: 115 ALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 LRR L++ D+ +D +HR EV L P EFRLL L+++ G+V ++ Sbjct: 119 MLRRAKPEVL-STLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRS 177 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 QLL+ VWG + + +++G LR+ L P T G GY Sbjct: 178 QLLDGVWGHDIYVDERTVDVHVGRLRKALNFSNM-PDVIRTVRGAGY 223 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIVEDE I RF++ LE +G V + + GL +A DLIILD+ LP +G+E Sbjct: 5 KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R LRQ S +PVI+L+A+ E DK+ LD GA+DY++KPF I EL AR+RV + S Sbjct: 65 VLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSNN 124 Query: 123 TAPDPLVKFS-DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + + + +D+ ++ + LT EF LL L+ N L++ +L +VW Sbjct: 125 NVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKVW 184 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + ++ + +Y+ +LR K++ D ++ T G+GY+F Sbjct: 185 GYDYLGDTNIVDVYIRYLRSKID-DKFNKKYIYTIRGLGYQF 225 >UniRef50_A6Q965 Two-component response regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q965_SULNB Length = 220 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 131/222 (59%), Gaps = 8/222 (3%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LIVEDE+A+ L+ LE + R A + L R+ DLI+LD LPDGDG+ Sbjct: 3 LLIVEDEKAVADQLKELLEQEKYRCDVAYNYRDALEYCDERRYDLILLDWNLPDGDGLTL 62 Query: 64 IRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + LR+ A PV++LSA S+ D++A LDAG DDYL KP+ EL AR+R LRR S Sbjct: 63 LNVLREEEDATPVLMLSANSKVDDRVAVLDAGGDDYLCKPYSNIELLARIRALLRRESPQ 122 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 L+K D+T+D ++R + +E + L+P EF LL +LL+N VLT+ QL + + Sbjct: 123 KT--TLLKSGDLTLDTSSRKVCVNKEPITLSPAEFDLLELLLHNKNIVLTRYQLNDYLCQ 180 Query: 183 P-NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 N+++ S+ + +++ +LR+K+ D +T G+ Y+ Sbjct: 181 DYNSLKQSNLVDVHIKNLRKKIGIDNC----IVTVRGVRYKI 218 >UniRef50_Q188S8 Two-component response regulator n=28 Tax=Bacteria RepID=Q188S8_CLOD6 Length = 224 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M N +L+V+DE+ I L+ E +G V+ A++ + L+ ++ PD+I+LD+ +P+ D Sbjct: 1 MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQS-GKDALKKISKNPDIILLDINMPEID 59 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 GIE +R + + P++ L+AR E +DKI AGADDY+ KPF + EL AR+ LRR Sbjct: 60 GIEVCNRIRDYISCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRRE 119 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + ++D+T+D R+I ++ L+ EF ++ +L N G+V + ++ ++ Sbjct: 120 QRKSNQTKIKFYNDLTIDYEKRLICIYNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDR 179 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VWG N+ +S + ++ +R KL + + T G+GY+++ Sbjct: 180 VWGYNSNGNSDVIMEHIRKIRIKLSKHTLE-NYIETVWGVGYKWI 223 >UniRef50_A9AWE4 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWE4_HERA2 Length = 975 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+++ ++A++ + L+ +V ++++Q L DL+++D +PD D +E Sbjct: 6 TILVIQPDRALQALIVRVLKTASFQVLRSDSIQSAQLLVEQEALDLVVIDQWIPDHDALE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--S 120 F R+LR+ S +P++++ A S+ + ALD G DDY+ PF E AR+R LRR + Sbjct: 66 FCRNLREHSNLPLLMVGASSDAYMRGIALDQGIDDYVITPFHESEFLARVRALLRRSQQA 125 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + + ++ + + + E VHLT E+ LL + + G+VLT R LL QV Sbjct: 126 TQQQQPQYTECGALLINWQDQQVRKYGELVHLTKTEWALLKLFIQYHGQVLTHRMLLQQV 185 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG + E YL Y+ LR KLE DP P+ +E+GIGYRFM Sbjct: 186 WGKSYSEDRAYLHAYIRRLRAKLEDDPTNPQLIHSESGIGYRFM 229 >UniRef50_A9WLJ1 Two-component response regulator n=4 Tax=Actinomycetales RepID=A9WLJ1_RENSM Length = 248 Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 128/228 (56%), Gaps = 6/228 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP-DLIILDLGLPDGD 59 M +LIVED+ I + AL G +V G++ A ++ P +LI+LDL LPD D Sbjct: 18 MAKILIVEDDPNINAAFKLALSQRGPQVEGCFLGAEGVIAARSQNPPELIVLDLMLPDLD 77 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G R +RQ S VP+I+++ARS+++D + L+AGADDY+ KP L AR+ LRR+ Sbjct: 78 GFSVCRAIRQTSLVPIIMMTARSDDADIVVGLEAGADDYVVKPVDPAILDARILAVLRRN 137 Query: 120 S----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + A D ++ + + +D +A + + + L+P E RLL LL + G+V ++ Q Sbjct: 138 NFEGEAADKADVVINGA-LRIDRSALSVSKNNAPLPLSPTEIRLLLELLQHPGQVRSREQ 196 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL VWG + S + + LR K E DP+ P+ +T G GYRF Sbjct: 197 LLRSVWGAEYLLDSRMVDASIQRLRSKNEDDPSNPQIVVTVRGFGYRF 244 >UniRef50_A5V0J0 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexaceae RepID=A5V0J0_ROSS1 Length = 229 Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 4/225 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+ +D+ A + LE G +V +A L R DL++LD+G+P G + Sbjct: 3 ILVADDDLASVKLTSFLLEDAGYKVIKAYDATGVLQAVEQRSLDLVLLDVGMPKVSGFDI 62 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R +R+ S VP+I ++ + D++ L G DDYL KPF EL AR+ LRR ++ Sbjct: 63 CRQIRRISDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRNSDL 122 Query: 124 APDPLVKFSD--VTVD-LAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +P+ + S +T+D + V+ V LTPIEFRLL L+ N G+VL+ Q+L++V Sbjct: 123 V-NPVTRISQGPLTLDPIEHTVLFEDGRSVVLTPIEFRLLYYLMQNTGRVLSASQILSKV 181 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WG + S+ + +Y+ LR K+E D PR+ IT +GY+F++ Sbjct: 182 WGYDYEGESNLVAVYIRRLRAKIEPDIDAPRYIITVRNLGYKFVV 226 >UniRef50_C6WIA6 Two component transcriptional regulator, winged helix family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WIA6_ACTMD Length = 244 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 + VL+VED Q IR + AL V A L P++++LDL +P DG+ Sbjct: 18 SKVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGPDGL 77 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R LRQ+S V++L+AR++E DK+ L AGADDYL+KPF EL AR+ LRR Sbjct: 78 EVCRRLRQFSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRRPRI 137 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 A D V VDL AR + V T IEF LLA + N +V T+ QL + W Sbjct: 138 PAARDSRRVVGPVEVDLDARSVEVNGNHVATTKIEFELLAAITENTRQVRTRDQLRRRAW 197 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFI-TETGIGYRF 223 G + H + +++ +LR+KL A PR FI T G+GYR Sbjct: 198 GEEWLADDHAVDVHVSNLRRKLVAAGA-PRDFIATVRGVGYRV 239 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLI+EDE+ I ++ L+ + + + + D +ILDL LPD G E Sbjct: 8 VLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEEI 67 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + +R S VP+++L+A+ EESD+I LD GADDY++KPF EL AR+R +RR + Sbjct: 68 CKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNNEG 127 Query: 124 APDPLVKFS--DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 L++ + D+ VDL + +E V LT EF+LL++ + N+GKV ++ +L+ +V Sbjct: 128 LKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVKVL 187 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 G + V + + +++ +LR K+E + ++ +T G+GYRF+ Sbjct: 188 GYDYVGYDRTIDVHIKNLRHKIECEYY--KYIVTVYGVGYRFV 228 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VED+ I L L G V GL A T DLI+LD+ LP DG + Sbjct: 9 ILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFDI 68 Query: 64 IRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---- 118 R LRQ P+++++A++EE DK+ L+ GADDY++KPF I E+ AR++ RR Sbjct: 69 CRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEVD 128 Query: 119 -HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + A D ++ V V+ R + E V LT EF LL + + G+ ++ +LL Sbjct: 129 QETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDELL 188 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++VWG +SH + ++ LR K+E DP+ PR+ T G+GYRF Sbjct: 189 DEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 130/243 (53%), Gaps = 27/243 (11%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEA----ETLQRGLLEAATRKPDLIILDLGLP 56 M +L+V+DE AI L L+ G V A + L GL ++ T I+LDL LP Sbjct: 3 MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFT----CILLDLMLP 58 Query: 57 DGDGIEFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 DG+E + LRQ P+I+++A+++E DK+ L+ GADDY++KPF E+ AR++ Sbjct: 59 KLDGMEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAV 118 Query: 116 LRRHSATTAPD--------------PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLA 161 +RR T PD ++ D+ +D + R + + LTP EF LL Sbjct: 119 IRR----TTPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLV 174 Query: 162 VLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 + G+VL++ +LN VWG + + + I++ HLR+K+E DP +PR T G GY Sbjct: 175 YFVEREGRVLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGY 234 Query: 222 RFM 224 F+ Sbjct: 235 EFV 237 >UniRef50_A3NL94 DNA-binding response regulator n=27 Tax=pseudomallei group RepID=A3NL94_BURP6 Length = 245 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 14/236 (5%) Query: 1 MTN------VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG 54 MTN VL+VED++ +RR L L G GM V T R+ ++++LDLG Sbjct: 1 MTNATRSPAVLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLG 60 Query: 55 LPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRV 114 LPDGDGI+ + R+ P+I ++ RSEE+D+I L+ GADDY+ KP+ + E+ AR+R Sbjct: 61 LPDGDGIDVLLRWRETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRA 120 Query: 115 ALRRHSATTAP------DPLVKFSDVTVDLAA-RVIHRGEEEVHLTPIEFRLLAVLLNNA 167 RR +T P +F T+++ R++ R +E+ LT EF LLA L + Sbjct: 121 LWRRAEPSTTPVRRGRHPRAYRFDGWTLNMNTRRLLTRDAQEIPLTVGEFNLLAFFLGSP 180 Query: 168 GKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +V+T+ QLL + V + + + LR+K+E+DP P TE G+GY F Sbjct: 181 SRVVTRAQLLECTRAFDDV-FDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYF 235 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 129/223 (57%), Gaps = 4/223 (1%) Query: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 ++VED+ +I + L +G + A + G+ DL++LD+ LP +G++F+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 65 RDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTA 124 + +R+ S +PV+++SA+ + DK L GADDY++KPF + EL AR++ A+RR + +A Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSA 120 Query: 125 PDP----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +P +++ + +D+ + + E + LT E++LL + +N KV T+ Q+ V Sbjct: 121 EEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRSV 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 W + + + ++M LR+K+E DP+ P++ T GIGY+ Sbjct: 181 WNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 2/219 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+D+ A+ L L +G R + +PD+++LDL LP +G++ Sbjct: 18 VLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQI 77 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +D+R S VP+++L+A+ + D + L+AGADDY++KPF EL AR+R LRR Sbjct: 78 CQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETGQ 137 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 A + + DV +D+ A + R + LTP+EF LL L +V T+ LL QVWG Sbjct: 138 AEN--LSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWGY 195 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + + +++ LR K+E+DP +P +T G+GY+ Sbjct: 196 RHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 130/232 (56%), Gaps = 12/232 (5%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 N+L+VEDE+ I + L G VF+ GL ++ L I+D+ +P DGI Sbjct: 5 NILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGIT 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA- 121 LR+ PVI+LSA+SEE DKI L+ GADDY++KPF EL AR+ LRR++ Sbjct: 65 LTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124 Query: 122 ---TTAPDPLVKFSDVTVDLAARVIHRGEEEVHL-------TPIEFRLLAVLLNNAGKVL 171 + V+ D + ++ +EV++ TPIEF++L++L+ NAG+V Sbjct: 125 LNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGRVF 184 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + ++ +VW NA+ ++ + +++ ++R+K+E DP P++ G+GY+ Sbjct: 185 SADEIYERVWNENAI-NTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKI 235 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 119/225 (52%), Gaps = 12/225 (5%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 V+++EDE I R + L +G V A G+ A +PD+++LD+ LP DG+E Sbjct: 17 VVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGLEV 76 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R ++ VPV++L+AR +E+D + L GADDY++KPF I EL ARL+ LRR Sbjct: 77 CRRIQADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRRAA 136 Query: 124 APDP-------LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 P P ++ D+ +D A R + R HLTP EF LL L N G VLT+ QL Sbjct: 137 PPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTREQL 196 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 L VW + + ++ LR+KL D R H G+GY Sbjct: 197 LADVWDWVDATGTRTVDSHVKALRRKLGSDLVRTVH-----GVGY 236 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 10/231 (4%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VEDE+ IRR LR LE + V EAE + L + DL+ILD+ +P DG Sbjct: 6 TVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWT 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R++S VP++ L+AR EESD++ + GADDY+ KPF EL R++ LRR S+T Sbjct: 66 TCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSST 125 Query: 123 ---------TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 P+ + F ++++ R E + L+P+E+ LL L NAG+VL++ Sbjct: 126 PPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLSR 185 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ-DPARPRHFITETGIGYRF 223 LL++VWG S + ++ LR+KL + PA + T G GY+F Sbjct: 186 DLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKF 236 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 N+LIV+DE+ IR L L+ +G VF+A+ + L + L++LD+ +PD DG Sbjct: 3 NNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGF 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR--- 118 E +R+ +P+++LSA+ E+ DKI + GADDY+ KPF EL R+R RR Sbjct: 63 EVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYF 122 Query: 119 -HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 ++ D +++ + +D I EV LT EF +L +L N G+V + ++ Sbjct: 123 LNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIF 182 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +VW + ++ + ++M LR KLE+ + T G+GY+ Sbjct: 183 EKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYK 227 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLIV+DE I +++ LE +G VFEA + L PDLI+LDL LPD G E Sbjct: 7 VLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGEEI 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +R+ S VP+I+L+A+ +E I+ L GADDY++KPF EL AR+ RR + Sbjct: 67 CSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLNEEV 126 Query: 124 AP-DPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P + F +D+ +D+ + I + E + LT ++++L LL K T+ +L++ Sbjct: 127 VPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREELISTA 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + + ++ ++RQK+E +P P++ IT G GYRF Sbjct: 187 LGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRF 229 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 130/229 (56%), Gaps = 10/229 (4%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++++V+DE +IR L +L G V A + + +PDLI+LD+ LPD DG Sbjct: 13 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFT 72 Query: 63 FIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R +RQ A PV+ L+AR + DK+ L G DDY++KPF + E+ AR+R LRR Sbjct: 73 VTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQE 132 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 DP+++ D+ ++ + + R + + L+P E++LL L++N G+VL++ Q+L+ VW Sbjct: 133 QVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 192 Query: 182 GPNAVEHSHYLRIYMGHLRQKLE----QDPARPRHFIT---ET--GIGY 221 + + + Y+ +LR+K++ +D H +T ET GIGY Sbjct: 193 QYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGY 241 >UniRef50_A7VHB9 Putative uncharacterized protein n=5 Tax=Firmicutes RepID=A7VHB9_9CLOT Length = 236 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/204 (39%), Positives = 121/204 (59%), Gaps = 6/204 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK-PDLIILDLGLPDGDGIE 62 + IVED+ I+ AL+ G V E + T K PDLI+LD+ LPD DG+E Sbjct: 17 IYIVEDDMNIQEIEMFALKNTGY-VTEGFANAKSFFSRMTEKIPDLILLDIMLPDQDGLE 75 Query: 63 FIRDLRQWSA---VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +R LR+ VP+I+++A++ E DK+ LD GADDYL+KPFG+ EL +R++ LRR Sbjct: 76 IVRKLRERPETVRVPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRR- 134 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 S + D +++ +VT+D R++H + LT EF LL +L+ NAG VL + ++ Sbjct: 135 SKSIQEDQILRLKNVTLDSEKRIVHVNDIPCELTFKEFELLKLLMINAGIVLRREVIMMD 194 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKL 203 VWG + S L +++ LRQKL Sbjct: 195 VWGTDYEGESRTLDMHIKTLRQKL 218 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 9/227 (3%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRG---LLEAATRKPDLIILDLGLPDGDG 60 VLIV+D+ +R L LEG G +E TL G + E T P ++ILD+ +P DG Sbjct: 7 VLIVDDDAKLRALLTQYLEGYG---YEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E +RDLR S VPVI+L+A+ E++D+I L+ GADDY+SKPF EL AR++ LRR Sbjct: 64 LEVLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAK 123 Query: 121 ATTAPDP---LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 +P + + V + +A + + + + L+ EF+LL L++N G+ +T+ L+ Sbjct: 124 GPENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLM 183 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VWG + + +++ LR + P T G GY F+ Sbjct: 184 TSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFV 230 >UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria RepID=B4RXL0_ALTMD Length = 221 Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 14/222 (6%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VED++ + L +L+ V T + + + D+++LDLGLPD DG+ Sbjct: 3 ILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGLNV 62 Query: 64 IRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 ++ +R+ +A +PV++L+AR + SDKI+ LDAGADDYL KPF I EL ARLRV RR Sbjct: 63 LKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG-- 120 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV-- 180 TA ++ +V++D A + E +HL E +L L+ NAG+VL++ QL N++ Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFI-TETGIGY 221 WG S+ + +++ HLR+K+ P +FI T G+GY Sbjct: 181 WGEEVA--SNTIEVHVSHLRKKM------PDNFIKTIRGVGY 214 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 130/222 (58%), Gaps = 14/222 (6%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VED++++ L +L +G V A T + L AT + ++ILDLGLPD DG+E Sbjct: 3 ILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGLEV 62 Query: 64 IRDL-RQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R R +VP ++L+AR +DKI LD+GADDYL+KPF + EL ARLRV RR Sbjct: 63 LRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG-- 120 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV-- 180 TA L+ +V +DLA + E L+ EF LL L+ NAG++ ++ QL ++ Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFI-TETGIGY 221 WG S+ + +++ +LR+KL P+ FI T G+GY Sbjct: 181 WGDEL--SSNAIEVHIHNLRKKL------PKDFIKTIRGVGY 214 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 8/228 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DE++I R + L+ + + A+ + L PDL+ILD+ LP DG E Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---- 118 R +R+ S VP+++LSA+ E DK + GADDYL KPF EL R++ LRR Sbjct: 66 VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125 Query: 119 HSATTAPDPLVKFSDVTVDLAA---RVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + + K S +++ V RG + V+LTP EF LL + + +V T+ Q Sbjct: 126 EQSVSKVRKTTKISKGELEINCESHEVFVRG-KPVYLTPKEFELLTFMAEHPDQVFTREQ 184 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L +W V + + +++ LR+K+E+DPA+P++ T GIGY+F Sbjct: 185 LFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1L3_THERP Length = 224 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M ++L+VED+ I + L L DG V L PDL+ILDL LP G Sbjct: 1 MAHILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLPGTHG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + R LR A P+++L+A +E D + LD GADDY++KPF EL AR+R LRR Sbjct: 61 RDVCRALRLRHATPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRR-- 118 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 A+ P + + D+ +D AR + +E V L P EF LL L++ AG+++++++LL QV Sbjct: 119 ASGPPVRELVYGDIRIDREARTVFIDDEPVTLRPREFDLLLALVSQAGRIISRQRLLQQV 178 Query: 181 WGPNAV-EHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 W + + E S L +++ LRQKL++ R GIGYR L Sbjct: 179 WCDHEIDEASRTLDVHVNRLRQKLQKSRVRIESI---RGIGYRLAL 221 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR-KPDLIILDLGLPDGDGIE 62 VL+VED+ + T L G V A G L+AA R PDLI+LD LP DG E Sbjct: 42 VLVVEDDPTVLEVTSTYLRAAGFIVNTA-IDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R VP+I+L+A ++IA L+AGADDY+SKPF EL R++ LRR Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 P+ + T+D +A I R EE+ LT EF LLA LL + G+ ++ QLL VWG Sbjct: 161 LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWG 220 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + S + + + LR+K+E DP P T G+GYR Sbjct: 221 WEFGDLST-VTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 350 2e-95 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 346 3e-94 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 345 6e-94 UniRef50_P21866 KDP operon transcriptional regulatory protein kd... 345 7e-94 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 342 5e-93 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 339 6e-92 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 339 6e-92 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 338 8e-92 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 337 2e-91 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 335 9e-91 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 333 3e-90 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 332 4e-90 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 331 1e-89 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 331 1e-89 UniRef50_C7RUD8 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 330 2e-89 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 330 2e-89 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 328 9e-89 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 328 1e-88 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 327 1e-88 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 326 3e-88 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 326 4e-88 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 325 5e-88 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 325 6e-88 UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=... 325 7e-88 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 325 7e-88 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 324 1e-87 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 324 1e-87 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 324 1e-87 UniRef50_B8G223 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_B8I014 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 324 2e-87 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 323 4e-87 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 322 4e-87 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 322 4e-87 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 322 5e-87 UniRef50_D1C683 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 322 6e-87 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 322 6e-87 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 322 8e-87 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 321 9e-87 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 321 1e-86 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 321 1e-86 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 320 2e-86 UniRef50_B8I272 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A9AXT6 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 320 2e-86 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 320 2e-86 UniRef50_A0LU58 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 320 2e-86 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 320 3e-86 UniRef50_C4L703 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 319 4e-86 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 318 7e-86 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 318 9e-86 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 318 1e-85 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 317 1e-85 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 317 2e-85 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 317 2e-85 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 317 3e-85 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 317 3e-85 UniRef50_A4AL32 Putative two-component system response regulator... 317 3e-85 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 316 3e-85 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 316 4e-85 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 316 4e-85 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 316 4e-85 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 315 9e-85 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 315 9e-85 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 315 9e-85 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 314 1e-84 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 314 1e-84 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 314 1e-84 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 314 1e-84 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 314 2e-84 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 314 2e-84 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 313 3e-84 UniRef50_A4J267 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteob... 312 6e-84 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 312 7e-84 UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteob... 312 7e-84 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_Q2W608 Response regulator consisting of a CheY-like rec... 311 1e-83 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 311 1e-83 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 311 1e-83 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_D2R313 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 310 2e-83 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 310 2e-83 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 310 3e-83 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 309 3e-83 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 309 4e-83 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 309 5e-83 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 309 6e-83 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 309 6e-83 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 309 7e-83 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_C6BG23 Two component transcriptional regulator, winged ... 308 7e-83 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 308 8e-83 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 308 8e-83 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 308 1e-82 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 308 1e-82 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 307 1e-82 UniRef50_A9F790 Two component system transcriptional regulatory ... 307 1e-82 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 307 2e-82 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 307 2e-82 UniRef50_A6LQJ3 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 307 3e-82 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 306 3e-82 UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob... 306 4e-82 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 306 4e-82 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 306 4e-82 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 306 5e-82 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 305 5e-82 UniRef50_D1C280 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 305 6e-82 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 305 8e-82 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 304 2e-81 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synecho... 304 2e-81 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A9KJX4 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 303 3e-81 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 303 3e-81 UniRef50_C6PZ92 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_Q1IUD6 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_C0WE14 Two-component system transcriptional regulator n... 302 4e-81 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 302 5e-81 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_B8GBC5 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 302 6e-81 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 302 7e-81 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 301 9e-81 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 301 9e-81 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 301 1e-80 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 301 1e-80 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 301 1e-80 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 300 2e-80 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_D1BL25 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 300 2e-80 UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1... 300 2e-80 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 300 2e-80 UniRef50_C9XRU4 Two-component system response regulator n=12 Tax... 300 3e-80 UniRef50_B8G869 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 300 3e-80 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_B0RVC3 Two-component system response regulator n=129 Ta... 299 4e-80 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 299 4e-80 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_B9Y2I0 Putative uncharacterized protein n=3 Tax=Firmicu... 299 5e-80 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 299 5e-80 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 299 5e-80 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 299 6e-80 UniRef50_D1B309 Response regulator receiver n=1 Tax=Sulfurospiri... 298 6e-80 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 298 8e-80 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 298 9e-80 UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacilla... 298 1e-79 UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostr... 297 1e-79 UniRef50_C6CSH8 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_P54443 Uncharacterized transcriptional regulatory prote... 297 1e-79 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax... 297 2e-79 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 297 2e-79 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 296 4e-79 UniRef50_C9XSY6 Two-component response regulator n=15 Tax=Firmic... 296 4e-79 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 295 5e-79 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 295 5e-79 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 295 9e-79 UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional r... 295 1e-78 UniRef50_D0LLH3 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_C4L1R5 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_UPI0001C31E43 two component transcriptional regulator, ... 294 1e-78 UniRef50_C1SI97 Response regulator with CheY-like receiver domai... 294 1e-78 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 294 1e-78 UniRef50_A9AXY0 Two component transcriptional regulator, winged ... 294 2e-78 Sequences not found previously or not previously below threshold: UniRef50_B1YK44 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_B8G179 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 320 3e-86 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 318 9e-86 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 316 3e-85 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 315 7e-85 UniRef50_C4L340 Two component transcriptional regulator, winged ... 315 9e-85 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 310 2e-83 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 309 4e-83 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 308 1e-82 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 306 3e-82 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 304 1e-81 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 303 3e-81 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 300 2e-80 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 299 4e-80 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 298 6e-80 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 298 1e-79 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 298 1e-79 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 297 2e-79 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 297 2e-79 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 296 3e-79 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 295 9e-79 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 295 1e-78 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 294 1e-78 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 294 1e-78 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 350 bits (899), Expect = 2e-95, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 3/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VED+ +R L L +G + AE + L KP L+ILD+ LP DG E Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R S+VP+++L+ARS ESDK+ L+AGADDYLSKPFG+ EL AR++ LRR Sbjct: 91 LCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQTQ 150 Query: 123 TAPDPL---VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + +K D+ + + ++ R + +P EF L + ++ N +V ++ QLL + Sbjct: 151 NSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLEK 210 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + + +++ LRQK+E DP+ PRH IT G GY+F Sbjct: 211 VWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 346 bits (890), Expect = 3e-94, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 130/223 (58%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VED++ I L L +G V A L + PDL++LD+ LP+ DG Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E +++R+ S VP+I+L+A+ EE DK+ L GADDY++KPFG EL AR+ LRR+ Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + + + +DL R + +EV+L+ EF +L +LL++ G+V T+ ++ + Sbjct: 121 SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHI 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG N + +Y+ LR+K+E DP+ P++ IT +GY+F Sbjct: 181 WGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 345 bits (887), Expect = 6e-94, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 131/227 (57%), Gaps = 5/227 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLI +DE+ IR L+ LE + V A + L +L+ILDL +P DGIE Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGIE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---- 118 R LR + +P+++L+A+ +E DKI L GADDY++KPF + E+ AR++ +RR Sbjct: 65 VCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLVL 124 Query: 119 -HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 +A T ++ F +T+D++ ++ G++E+ LT E LL +N +V T+ QL Sbjct: 125 GSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQLF 184 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VW N +E + + +++ LR+K+E DP+ P+ T GIGY+F+ Sbjct: 185 RNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFV 231 >UniRef50_P21866 KDP operon transcriptional regulatory protein kdpE n=92 Tax=Bacteria RepID=KDPE_ECOLI Length = 225 Score = 345 bits (887), Expect = 7e-94, Method: Composition-based stats. Identities = 225/225 (100%), Positives = 225/225 (100%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS Sbjct: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV Sbjct: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML Sbjct: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 342 bits (879), Expect = 5e-93, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 141/226 (62%), Gaps = 3/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DE+ I + L+ +L D V A + L K D+I+LD+ LP DG+ Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R++S VP+I+L+A+ ++ DKI LD GADDY++KPF I E++AR++ LRR+S+ Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132 Query: 123 TAPDP---LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T + ++K D+ +D +R ++ ++E++LT EF LL +L N GKV ++ LL Sbjct: 133 TQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLKA 192 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWG + + + ++M LR+K+E +P+ P++ T+ G+GY F + Sbjct: 193 VWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 136/226 (60%), Gaps = 5/226 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +++V+DE+ IR + LE +G RV +AE + L K DLIILD+ +P+ DGI Sbjct: 4 NTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGI 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E +R+ +P+I+LSA++E+ DKI L AGADDY++KPF EL AR++ LRR+ Sbjct: 64 EACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKK 123 Query: 122 TTAP-----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 D +++ ++T++ A + GE++V LTP EF +L +L N G V + ++ Sbjct: 124 FNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKI 183 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +VW + + + +++ LR+K+E++P +P++ T G+GY+ Sbjct: 184 YERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VEDE +IRRF+ LE G V EAE+ + L PDL++LDL LP DG+E Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 63 FIRDLRQWSAVP-VIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + +R+ P +I+L+A+ +++DKI L+ GADDY+ KPF EL AR++ LRR Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 A + + +D AA + + +EV LTP E+ LL + + N GK L + ++LN +W Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + L +++ LR+K+E +P+ PR+ T G GYR+ Sbjct: 187 GEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRW 228 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 338 bits (869), Expect = 8e-92, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L V+D+ I + L+ +L +G V A + + L +A PDL+ILDL +P DG E Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + L+ VP+I+LSAR+EE D++ G DDY +KPF EL R++ LRR Sbjct: 64 TYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGEP 123 Query: 123 TAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + ++K+ ++T+D R + +V LTP +F LL ++ +N +V T+ LL+++W Sbjct: 124 KVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKIW 183 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + + +++ LR+K+E DP+ P + T G+GY+F Sbjct: 184 DSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKF 225 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 337 bits (865), Expect = 2e-91, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 2/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M ++L+V+DE + + LR +LE +G +V A + L + DLI+LDL LP DG Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + R++R P+I+L+A++++ DKI L+ GADDY++KPF EL AR+R LRR Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 121 ATTAPDPL--VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A + D + D+ + R + LT E+ LL +L + G V T+++LL+ Sbjct: 121 AASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLD 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + +++ +R+KLE+DP+RPR+ T+ G+GY Sbjct: 181 LVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYL 225 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 337 bits (865), Expect = 2e-91, Method: Composition-based stats. Identities = 92/225 (40%), Positives = 137/225 (60%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M+ +L+V+DE A+R LR LE +G V EA +R L A KPDL++LDL +P+ G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 EF+R + S PVIVL+A+ E++DKI L+ GADDY++KPF + EL AR+R LRR Sbjct: 61 YEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T +++ +D+ +D R + G V LTP EF +LA L+ G+V ++ LL++V Sbjct: 121 QTPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRV 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + +++ +LR K+E DP P++ T G+GYRF L Sbjct: 181 SGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFAL 225 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 335 bits (860), Expect = 9e-91, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VEDE+AIR + LE + V Q L E + DL+ILDL LP G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R S VP+I+L+A+ E D+I L+ GADDYL KPF EL AR+R LRR A Sbjct: 70 VCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHAD 129 Query: 123 TAPD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + P +++F ++T+D++ + G +EV LT EF+LL L G+V ++ +L+ +V Sbjct: 130 SEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKVL 189 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + + ++ +LR K+ +P P+ T G+GYRF Sbjct: 190 GYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRF 231 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 129/228 (56%), Gaps = 6/228 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L++ED Q I + LE V GL T+ DLIILD+ LP DG+ Sbjct: 3 KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGL 62 Query: 62 EFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 + + LR + P+++L+A+ ESD++ L+ GADDYL+KPF + ELQAR++ LRR Sbjct: 63 QVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122 Query: 120 ----SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 +T D + F ++ +D R + G++E+ LT EF LL + ++ G+V ++ + Sbjct: 123 MSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREK 182 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+ VWG + H + ++ LR KLE D + P++ +T G+GY+F Sbjct: 183 LLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 332 bits (854), Expect = 4e-90, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 V++V+DE+ I L L+ +G V+ A + +PD+++LD+ LP DG+E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R++R+ +P+I+L+A+ E DK+ L+ GADDY++KPF EL AR++ LRRH + Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123 Query: 123 TAPDP-----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 A D + D+ + A I + E++ LT EF L L + G+V+T+ LL Sbjct: 124 PAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 VWG + + + + LR+K+E DP+ P + +T G+GY Sbjct: 184 QTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 332 bits (853), Expect = 5e-90, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 7/229 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+D+ +I + L +G V +A + L D+ I+D+ LP DG Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87 Query: 62 EFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 E +R LR ++ PV+ LSA+ EE DK+ L+ GADDY++KPF I E+ AR++ RR Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 Query: 119 ----HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + + +D+ + +++V LTP+EF LL L N GKV ++ Sbjct: 148 IQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRD 207 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+++WG + + + +++ LR K+E+DP+ P++ IT G GY+F Sbjct: 208 VLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 124/235 (52%), Gaps = 11/235 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+V+DE AI L L+ G V A L + I+LDL LP DG Sbjct: 3 MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDG 62 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +E + LRQ P+I+++A+++E DK+ L+ GADDY++KPF E+ AR++ +RR Sbjct: 63 MEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRT 122 Query: 120 SATT----------APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 + A ++ D+ +D + R + + LTP EF LL + G+ Sbjct: 123 TPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGR 182 Query: 170 VLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VL++ +LN VWG + + + I++ HLR+K+E DP +PR T G GY F+ Sbjct: 183 VLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFV 237 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 132/233 (56%), Gaps = 11/233 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT---------RKPDLIILD 52 + +L+VEDE IR + L+ +G V A + L + PDL++LD Sbjct: 24 SRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLD 83 Query: 53 LGLPDGDGIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQAR 111 L LP +G++F R LR+ VP+++LSA+ E+D++ L+ GADDYL+KPFG EL AR Sbjct: 84 LMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143 Query: 112 LRVALRRHSATTAPDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKV 170 R LRR A P ++++ + + + + E+ L+P EFRLL + + + +V Sbjct: 144 CRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRV 203 Query: 171 LTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++ QLL ++WG + + S + +++ LR+K+E +P+ P + +T G GYR Sbjct: 204 WSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_C7RUD8 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=C7RUD8_9PROT Length = 235 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 134/221 (60%), Positives = 172/221 (77%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +++VEDE IRRF++ ALE +G +VFEA++++RGL+EA TR+ DL++LDLGLPDGDGI+F Sbjct: 8 IVVVEDEANIRRFIKLALESEGFQVFEADSVKRGLIEAGTRRADLVVLDLGLPDGDGIDF 67 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 IRDLR WS +PV+VLSAR+ E DK+AALDAGADDYL+KPFG EL AR+R LRR S + Sbjct: 68 IRDLRAWSEIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRSRSA 127 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 L +F + VDLA R + R +HLTPIE+RLL+ L+ N VLT RQLL VWGP Sbjct: 128 GGTALAEFGSIRVDLARRTVERDGAPLHLTPIEYRLLSYLIANPDCVLTHRQLLKNVWGP 187 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VE SHY+R+YMG+LR+K+E DPARP+H TE G+GYRF+ Sbjct: 188 GHVEDSHYVRVYMGNLRKKIEDDPARPKHLRTEAGVGYRFV 228 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 131/231 (56%), Gaps = 8/231 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP-DLIILDLGLPDGD 59 M VLIVED+ A+R + L +G+ + L + KP DL++LD+ LP D Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 60 GIEFIRDLRQWSA----VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 GI R+LR+ + VPV++L+AR +E+ + L+ GADDY++KPF +L +R+R Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 116 LRRHSATTAPDP---LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 LRR P ++F + +DL R + E+V LT EF +LA+L +N G+V + Sbjct: 121 LRRQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYS 180 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + Q+++ +WG +++ HLRQK+E DP PR+ T G+GYRF Sbjct: 181 REQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 131/229 (57%), Gaps = 7/229 (3%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M+ N+L+V+DEQ I + L+ +G ++++ Q + + +L ILD+ LPD D Sbjct: 1 MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G + +R+ PVI+L+A+ EE DKI L GADDY++KPF EL AR++ LRR Sbjct: 61 GFTLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRF 120 Query: 120 SA-----TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + + L+ FS + +D+ E+++ LTP EF +L VL +N G+V++ Sbjct: 121 TKYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSE 180 Query: 175 QLLNQVWGPNAVEHS-HYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +L ++VWG +S + + +++ HLR+K+ P++ T G+GY+ Sbjct: 181 ELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYK 229 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVEDE+ IR + LE + V+ A G T +PDLIILDL +P DG Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E ++RQ S VP+I+L+A+ EE D+I L GADDYL+KPF EL R+++ LRR + Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 121 ATTAP-----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 +++F D+ + R + E EV LT EF +L V+ + +V ++ Q Sbjct: 121 QVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQ 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL +W S+ + + + LR+KLE+ + T GIGYRF Sbjct: 181 LLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRF 228 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+DE I +++ L +G V A + L KPDLI+LD +P+ GIE Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R++R+ S +P+I+L+A++EE DK+ + G DDY+ KPF + EL AR++ L+R A Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEAK 123 Query: 123 TAPDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T + ++ D+T+ R + + + LTP EF+LL L N GK ++ +LL Sbjct: 124 TINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYAI 183 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + ++ +LR+K+E+DPA P + T GIGY+ Sbjct: 184 GEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKL 225 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 328 bits (842), Expect = 9e-89, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+D++ I + L LE +G V A + +A PD+++LD+ LP DG Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---H 119 +++R+ S VP+I+L+AR +E+D+I L+ GADDY+ KPF E+ AR+R RR Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 S + ++K D +D +R + V LTP E++LL + L + G+V ++ QL+ + Sbjct: 122 SRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEK 181 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 V + + ++ +LR+KL P P + T G+GY+ + Sbjct: 182 VQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLV 226 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 3/226 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT+VLIVEDE+++ L L +G L E D+++LDL LP G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 + + LR S+VPVI+++AR E DK+ L+ GADDY++KP+ EL AR+R LRR Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGA 120 Query: 119 -HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + A D +++ V +D+ V+ E + L EF LL L+ N+G+VLT+ QL+ Sbjct: 121 DNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLI 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++VWG + V + L +++ LR K+E+DPA P H +T G+GY+ Sbjct: 181 DRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKL 226 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 133/222 (59%), Gaps = 1/222 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L++ED+ IR +R AL DG V EA + GL D++++DL LPD DG Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R LR+ S VP+I+++AR++ D +A L+AGADDY++KPF + EL AR+R LRR + Sbjct: 79 ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 122 TTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P ++ D+ + A V+ R E +HLT EFRLL L + +V ++ QLL +V Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 WG + + +++ LR K+E+DPA PR +T G+GY+ Sbjct: 199 WGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYK 240 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 4/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DE +R L + L+ + + A Q L L++LD+ +P+ DG+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R++S VP+I+L+ARS+E D+I L GADDY++KPF EL AR+ LRR Sbjct: 67 ACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRF 126 Query: 123 TA-PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T + + +D +R +H + + LT EF LL + + N KV ++ QLL+Q+W Sbjct: 127 TVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQIW 186 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + + + ++ LR KL + T GIGY+F Sbjct: 187 GADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKF 225 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 127/231 (54%), Gaps = 12/231 (5%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DE IR L L+ G V A + L A DL++LD+ LP+ DG+E Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLE 59 Query: 63 FIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 R L+ Q S +P+I+L+A++EE D++ L+ GADDY+ KPF + EL AR++ LRR Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 120 SATT-------APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 ++ + + + +D ++ ++ + LTP E+ LL +L+ N G+ + Sbjct: 120 ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFS 179 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +LL ++WG + + +++ HLR KL+ DP T G+GYRF Sbjct: 180 RDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 3/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLIV+D++ + ++ LE +G V A + G + +ILD+ LP+ DG E Sbjct: 5 QVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWE 64 Query: 63 FIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +R S VP+I+L+A+ EE DKI L GADDY+ KPF EL AR+R +RR Sbjct: 65 VCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRD 124 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 D +++ D+TVD + + + EV L P EF LL +L+ N +V T+ ++L + Sbjct: 125 QDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEK 184 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +WG + + + ++ +R+KLE + T G+GY+F + Sbjct: 185 IWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEV 230 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 124/231 (53%), Gaps = 7/231 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +L+V+DE IRR LR LE + + EAE + + DLI+LDL +P DGI Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS- 120 E R +R+ A P+I+L+A+ EE++++ +AG DDY+ KPF E+ R++ LRR S Sbjct: 67 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 121 -----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 A T ++ FS +++D A + EV LTP E+ LL L KV + + Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ-DPARPRHFITETGIGYRFML 225 LL +VW + ++ LR+KL + P + +T G+GY+F + Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 326 bits (837), Expect = 3e-88, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+V+D+ + + L G V A L A T PDL++LDL LP DGI Sbjct: 56 ARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGI 115 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R LR VPVI+L+AR++ESD+I L+ GADDY++KPF EL R++ LRR + Sbjct: 116 EVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 122 T--TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T A +++ + VD AAR R + LT EF LLA LL G+ T+ +LL Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + +++ LR+K+E DP PR +T G+GYR+ Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRY 278 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 130/227 (57%), Gaps = 3/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + VLI++DE+ I ++T L +G+ RV A T + GL + PDL+ILD+ LPDG+G Sbjct: 38 SKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEG 97 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + + +R S VP+I LSA+ EE+DKI L G DDY++KPF E+ R++ LRR S Sbjct: 98 YDICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVS 157 Query: 121 --ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + ++K ++ + + E + LTP E L+ L + +V+++ L Sbjct: 158 YLQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQ 217 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWG + + + +++ LR+K+E P++P +T G+GY+F++ Sbjct: 218 AVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFVV 264 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIVED+ I ++ +L +G + +A + + ++I+D+ +P DGIE Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 +R +R+ S VP+I+LSA+ E+SDKI L GADDY+ KPF + EL AR++ +RR Sbjct: 65 SMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYY 124 Query: 120 --SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + + + + ++ DV D+ + +G +E+ LT E ++L + N +V T+ Q+ Sbjct: 125 NETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQIY 184 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VWG + + + ++M LR K+E DP P+ T GIGY+ Sbjct: 185 DSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 325 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 119/234 (50%), Gaps = 11/234 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M VL+V+DE AI L L+ V A L D+++LDL LP+ G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 61 IEFIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 E ++ +R + PVIVL+A+ E DK+ L+ GADDY+ KPF E+ AR+ LRR+ Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 120 SATTAPDP----------LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 + + + T+D + ++ + LTP EF L+ L+ + + Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQ 180 Query: 170 VLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VL++ QLL VWG + S + I + HLR+K+E DP RP++ T G GY F Sbjct: 181 VLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X641_OXAFO Length = 231 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 126/222 (56%), Positives = 169/222 (76%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L VEDE IRRF++ ALE + VFEA+ ++RGL+EAATR+PDL++LDLGLPDGDG+E Sbjct: 6 RILTVEDESNIRRFVKLALENENYEVFEADGVKRGLIEAATRRPDLVVLDLGLPDGDGLE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 FI DLR WS++P+IVLSARS E+DKI+ALDAGADDYL KPFG GEL AR+R LRR Sbjct: 66 FITDLRAWSSIPIIVLSARSNENDKISALDAGADDYLVKPFGAGELLARVRAQLRRQQPG 125 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 T +P ++FSDV +D RV+ + +HLTPIE+R+L + + +V+T +QLL +WG Sbjct: 126 TPNEPFIRFSDVCIDPVRRVVEKNGAPIHLTPIEYRILIFMTSQPDRVITHQQLLKAIWG 185 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 P E HY+R++M +LR+K+E++ + PRH ITE GIGYRF+ Sbjct: 186 PGHTEDMHYIRVHMANLRKKIEENASMPRHLITEAGIGYRFV 227 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 130/228 (57%), Gaps = 6/228 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VLI+ED+ I ++ L G A G+ A + D+IILD+ LP DG+ Sbjct: 4 KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGL 63 Query: 62 EFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + LR+ VP+++L++RSEE DK+ +L+AGADDY++KPF I EL AR+ +RR+ Sbjct: 64 EVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYR 123 Query: 121 ATTAPD-----PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 P F + +D + +E+ +T EF LL++ + N G+ ++ + Sbjct: 124 PEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTE 183 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+ VWG + + H + ++ LR K+E++PA+P++ +T G+GY+F Sbjct: 184 LLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 2/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT+VLIVEDE+++ L L +G L E D+++LDL LP G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + + LR S+VPVI+++AR E DK+ L+ GADDY++KP+ EL AR+R LRR Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGG 120 Query: 121 ATTAP--DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + D +++ V +D+ V+ + + L EF LL L+ N+G+VLT+ QL++ Sbjct: 121 DDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLID 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + V + L +++ LR K+E DPA P H +T G+GY+ Sbjct: 181 RVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 3/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DE +I + L+ G V + +PDLI+LDL LP DGI Sbjct: 3 KKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGI 62 Query: 62 EFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + R+LR+ S VP+++L+A + +DKIA LD GADDY++KPF EL +R++ RR Sbjct: 63 QVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ 122 Query: 121 --ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A +TV R + + LTP EF LL L + GKVL+++QLL+ Sbjct: 123 TLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLH 182 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VW + + + + +++ HLR K+EQ+ P + +T +GY+ Sbjct: 183 GVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 125/231 (54%), Gaps = 8/231 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M N+LIVED+Q I + +R LE + + GL + PDLI+LDL LP DG Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 61 IEFIRDLRQW--SAVP-VIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 +E +RQ S P +++L+A+ EE D+I L GADDYL KPF EL AR+R LR Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 118 RHSATTAP-DPLVKFSDVTVDLAARVIHR----GEEEVHLTPIEFRLLAVLLNNAGKVLT 172 R P + + + VDL R +EE+ LT +EF LLA ++ G+V Sbjct: 131 RQLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWN 190 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + QL+ ++WG + + ++ LR+K+E DPA P T G+GY+F Sbjct: 191 RTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 132/234 (56%), Gaps = 12/234 (5%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA----------ATRKPDLIIL 51 N+L++EDE IR + AL+ +G A L + LIIL Sbjct: 22 ANILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIIL 81 Query: 52 DLGLPDGDGIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQA 110 D+ LP +G++ R +R+ VP++++SA+ E D++ L+ GADDYL+KPFG+ E+ A Sbjct: 82 DVMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLA 141 Query: 111 RLRVALRRHSATTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 R R LRR A P+++F D+ + EE++L+P E++LL + + + + Sbjct: 142 RCRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRR 201 Query: 170 VLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 V + QLL+QVWGP+ V S + +++ LR+K+E DP+ P++ +T G GYRF Sbjct: 202 VWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DE++I R + L+ + + A+ + L PDL+ILD+ LP DG E Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---- 118 R +R+ S VP+++LSA+ E DK + GADDYL KPF EL R++ LRR Sbjct: 66 VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125 Query: 119 --HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + + ++ ++ + + + V+LTP EF LL + + +V T+ QL Sbjct: 126 EQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +W V + + +++ LR+K+E+DPA+P++ T GIGY+F Sbjct: 186 FAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 4/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIVED++ I R + L +G + + + L+ILD+ LP G E Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS-- 120 ++ +R+ PV++LSA+ EE+DKI L GADDYL+KPFGIGEL AR++ LRR+ Sbjct: 66 VLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLNF 125 Query: 121 --ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 T +++ ++ +++ + G+ V LT EF +L + L N KV T+ QL Sbjct: 126 SWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLFK 185 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +WG N + + + +++ LR+K+E+DP+ P + T GIGY+ + Sbjct: 186 SIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLV 231 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 125/222 (56%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VED+Q I++ L L+ + +A + + DL+ILDL LP DG Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +++++ VPVI+L+AR EE DKI G DDYL+KPF EL R++ LRR+ Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + ++K+ V V+L R + + E V LT E+ LL +L N ++ T+ Q+++++ Sbjct: 121 KGRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRL 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 W E + + + + LR+K+E+DP+ PR T G+GY+ Sbjct: 181 WPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+V+D+ I+ + L +G R+ A T + A + +PDLIILD+ LPD DG E Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS--- 120 R +R + VP++ LS R ++ D+I G DDY++KPF L A+++ +RR+ Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 121 ---ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + + F ++ +D + R + + L EF+LL L NAG+V + L Sbjct: 126 GSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLF 185 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +WG ++ + +++ +LR+K+EQDPARP + IT G+GY+F Sbjct: 186 DSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKF 231 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 +LIV+DE+ I L L+ +G R ++ T + G+ +PDLI+LD+ LPD DG Sbjct: 11 KKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLDG 70 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +RQ++ VP+ LSA++E+ DKI L G DDY++KPF E+ +++ RR+ Sbjct: 71 YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + +F D+T+D A + R + LT EF +L L+ N ++ ++ +L V Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + + ++M HLR+K+E +P++P + IT G+GY+ Sbjct: 191 WGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKL 233 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+ +D+ + L AL +G V +A Q L A +++PDL+ILD+ +P DG Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R SAVP+++L+AR + DK+ GADDY++KPF + EL R+ LRR T Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM-PT 124 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 ++F + ++ + R +H G+ LTP EF LL ++ ++ G T+ LL +VW Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +A + + + LR+K+E +PA+PR T GIGY+F Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKF 225 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 126/225 (56%), Gaps = 2/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +L+VED+ + L E G +V A GL A PDLIILD+ LP DG Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR--R 118 R + + + VP+++L+A +E+ +IA L+ GA DY+ KPF +GEL AR+R LR Sbjct: 61 FSVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNE 120 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 T ++ V +D +R + + E+ L+ EF LLA L++NAG L++ LL Sbjct: 121 RQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLE 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + + + +++ LR+KLE DPA P T GIGY F Sbjct: 181 RVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+V+DE+ I R L L +G + L A D I+LD+ LP DGI Sbjct: 10 KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGI 69 Query: 62 EFIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + LR + S P++++SA+S+E DK+ AL+ GADDY++KPF EL AR++ LRR Sbjct: 70 EVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTE 129 Query: 121 AT------TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 A +P S + + +++ +E + LTP E+ LL L+ + LT+ Sbjct: 130 AEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRE 189 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +LL ++WG + + + + +++G LR+K+E +P P++ T G GY+F Sbjct: 190 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 322 bits (827), Expect = 5e-87, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T VLIV+DE+ I +R LE +G V A L D ++LD+ +P G Sbjct: 5 TTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGY 64 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-S 120 + +R +R+ VPV+ L+AR E+ DKI L GADD++ K GE+ AR++ LRR+ Sbjct: 65 DVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRR 124 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 AP ++ F + +D+ A + + V LT EF LL + + +V T+ QL ++ Sbjct: 125 GEPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRL 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG H + +++G LR+K+E+DPA PR+ +T G+GYRF Sbjct: 185 WGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRF 225 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+D+Q+I LR LE D V A + D +ILD+ +P +G Sbjct: 4 KTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGF 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 F R +R S VP++ LSARS + DKI L G DDY+ K GE+ AR++ LRR ++ Sbjct: 64 AFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSAS 123 Query: 122 TTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P + +++F +T++L R + + V LTP E+ LL + L + V + QLL+++ Sbjct: 124 NQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKL 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 W + V H +R+++ LR+K+E +P P++ + GIGYRF Sbjct: 184 W--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRF 224 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIV+DE IR +R L+ G EA L + DL+ILD+ +P DG Sbjct: 72 MAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDG 131 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 + +R++R PVI+L+AR EE DK+A L+ GADDY+ KPF EL AR++ L R Sbjct: 132 MTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT 191 Query: 120 -SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + A D + F ++T+D A+ + E+V LTP EF LL L +N G L++ ++L Sbjct: 192 MPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQ 251 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VW + + ++ LR L + + T GIGY+F Sbjct: 252 KVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKF 293 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 101/223 (45%), Positives = 147/223 (65%), Gaps = 2/223 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+DE + F+R LE +GMRV A + + + PD+++LD+ +P DG E Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +R +R +S VPVI+L+A+ EE D++ L+ GADDY+ KPF EL +R+R LRRH Sbjct: 69 LRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQP 128 Query: 124 A-PDPLVKFSD-VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 P LVK D +++D A R + + V+L P E+RLL L+ NAG VLT LL++VW Sbjct: 129 PIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKVW 188 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 GP + SHYLR+Y+ +LRQK+E+DP+ PR+ +TE G+GYRF+ Sbjct: 189 GPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 MT +L++ED++ I + L L +G +V A + GL A+ P L+++DL LP D Sbjct: 12 MTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVD 71 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G E R +RQ S VP+IV+SAR + DKI +L GADDY++KPF EL AR++ LRR+ Sbjct: 72 GFEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRY 131 Query: 120 SATT---APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + ++ F +T++ R++ + + LT EF LL L G+V ++ QL Sbjct: 132 HRYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQL 191 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 N+VW + + + +++ ++R+KL PR T GIGY+F+ Sbjct: 192 YNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFI 239 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 4/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DE AI + LE +V + + D +I+DL LP DGI Sbjct: 3 KTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGI 62 Query: 62 EFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + +R++ +P+I+L+A++ + DKI L+ GADDY++KPF EL +R++V LRR Sbjct: 63 EATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTD 122 Query: 121 AT---TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 DP ++ ++ +D V+ + E++ LTP EF+LL L NA +VL++ Q+L Sbjct: 123 RAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQIL 182 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +VWG + + I++ HLR KLE DP P+ T G GY F+ Sbjct: 183 EKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFV 229 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 3/224 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VLIV+DE+ +R + LE EAE + L K D+I++D+ +P DG Sbjct: 4 KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGF 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R+ S VP++ L+AR +E DK+ L G DDY+ KPF GEL AR+ +RR Sbjct: 64 TLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYH 123 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + + F + +D R + + V LT EF LL L + G+V ++ LL QVW Sbjct: 124 NKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVW 183 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + ++ + ++ LR KL+Q T GIGY+F + Sbjct: 184 GYDYTGNARTVDTHIKTLRMKLKQASD---FIQTVWGIGYKFEV 224 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DE +IR + LE G RV A T GL A +PDLI+LDL LP DG+ Sbjct: 3 PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGM 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E LR+ S V +++L+ARS+E D++A L GADDYL+KPF EL AR+ LRR Sbjct: 63 EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 +++F+ V +D AR + + LTP EF LL L N +VL++ L+ +VW Sbjct: 123 KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVW 182 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 G + + +Y+ +R+K+E T G+GYRF+ Sbjct: 183 GADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFV 224 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 6/229 (2%) Query: 1 MTNV--LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M N+ LIVEDE I ++ L T +L PD +ILDL LPD Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 DGIE R +R+ S V +++LSAR ++DK+ L GADDY++KPF + EL AR+ LRR Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 119 HSA----TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 ++ ++ ++ + R + + L+ EF LL L N +V ++ Sbjct: 121 QDRWLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKS 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 QLL+ VWG + + + +Y+ +R+K+E +P+ P + T G+GY+F Sbjct: 181 QLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 122/220 (55%), Gaps = 2/220 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+D+ A+ L L +G R + +PD+++LDL LP +G++ Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +D+R S VP+++L+A+ + D + L+AGADDY++KPF EL AR+R LRR Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG 136 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 A + + DV +D+ A + R + LTP+EF LL L +V T+ LL QVWG Sbjct: 137 QAEN--LSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWG 194 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + + +++ LR K+E+DP +P +T G+GY+ Sbjct: 195 YRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M+N +LIV+DE IRR L+ LE + + EA Q A I+LDL LP+ D Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 GI+ LR+ P+I+L+A+ EE++++ ++GADDY+ KPF E+ R++ LRR Sbjct: 61 GIQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRT 120 Query: 120 SATTAPDP------LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 +TT +++F + +D A + +EV+LTP E+ LL L KV + Sbjct: 121 QSTTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDR 180 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRH-FITETGIGYRFML 225 QLL +VW + ++ LR+KL + + H T G+GY+F + Sbjct: 181 EQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 233 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LI++DE + ++ L DG +V A L + PDLIILD+ LPD +G+E Sbjct: 5 KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS-- 120 ++LR+ + P++ LS + + DKI L G DDY++KPF EL AR+ LRR+ Sbjct: 65 LCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRIL 124 Query: 121 ---ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 +A ++ + +T+D A ++ ++ V LT EF +L++L + V + QL Sbjct: 125 TNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQLY 184 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +WG + + + + +++ +LR+K+E+DPA P+ +T GIGY+ Sbjct: 185 DHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_A9AXT6 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXT6_HERA2 Length = 231 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 104/224 (46%), Positives = 136/224 (60%), Gaps = 2/224 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+ EDE +R F+R L+ G V EA L T +P LIILDL +P G E Sbjct: 7 RVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRLTGFE 66 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ S VP+IVL+A E DK+ A D GADDYL KPFG+ EL AR+R LRR + Sbjct: 67 VCQRIREQSIVPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRRSQWS 126 Query: 123 TAPDP--LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P ++ ++ +DL A + R +V LTP EF LLA L+ + KVLT R LL V Sbjct: 127 VQPQASGTKRYGELEIDLEAHSVRRAGLDVRLTPTEFALLAYLITHPNKVLTHRMLLQHV 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG + + YLR+Y+G LR+KLE DP+ PRH +TE GIGYRF+ Sbjct: 187 WGDQYRDEAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGYRFV 230 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 125/229 (54%), Gaps = 4/229 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVED+ I + L +G V A + GL A + DLI+LD+ LP DG Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 R+LR++ VPV++++AR EE D + L GADDY+ KPF EL AR+R + R+ Sbjct: 61 FAVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 121 ----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + +VK + + L A + ++EV T EF LLA L + V ++ L Sbjct: 121 RILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREAL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +VWG A+ S + +++ +R+K+E+DPA PR+ T G GYRF L Sbjct: 181 FERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFRL 229 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 6/228 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M NVLI++DE I + L +G +VF+A G+ K +++LD+ +P DG Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 + +R+ +P+I+LSA+S++ DKI L GADDY+ KPF EL AR++ +RR+ Sbjct: 61 FQVCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 120 -----SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 S + +++F D+T++ + +E+ LTPIE+ +L +L NN G V + Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAE 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + +VW E ++ + +++ LR+K+E++P P+ T G+GY+ Sbjct: 181 DIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYK 228 >UniRef50_A0LU58 Two component transcriptional regulator, winged helix family n=16 Tax=Bacteria RepID=A0LU58_ACIC1 Length = 240 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 114/225 (50%), Positives = 155/225 (68%), Gaps = 1/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +VL+V+DE AI R LR L G V+ A + L KPDL+ILDLGLPD DG Sbjct: 1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 I+ I +R WS +P++VLSAR +E+ K+ ALDAGADDY++KPFG+ EL ARLR ++RR Sbjct: 61 IDVIGGVRGWSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRAR 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T+A ++ D T+DLA + + RG+E + LTP E+ +L +L +AG+++T RQLL+ V Sbjct: 121 PTSAEPRIIT-PDFTIDLADKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDV 179 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WGP +HYLR+YM LR+KLE DPA PR+ TE GIGYR ++ Sbjct: 180 WGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRLVV 224 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+VED+ I L L G V GL A T DLI+LD+ LP DG Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 + R LRQ P+++++A++EE DK+ L+ GADDY++KPF I E+ AR++ RR Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 119 ---HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + A D ++ V V+ R + E V LT EF LL + + G+ ++ + Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL++VWG +SH + ++ LR K+E DP+ PR+ T G+GYRF Sbjct: 187 LLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 3/226 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +L+ EDE AIR F+ L+ G V EAE + L + D+++LD+ +P+ DG Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 61 IEFIRDLRQWSAV-PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 R V +I+L+AR+ E DK+ L GADDY++KPF EL AR++ LRR Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 120 S--ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + +DL A+ + + +V +TP E+ LL + N +V+++ +LL Sbjct: 121 ETLRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELL 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VWG N + + + LRQK+E++PA P+ T G GY++ Sbjct: 181 DAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKW 226 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 126/229 (55%), Gaps = 7/229 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VED+ I+ + LE +G V AE + L KPDL++LD+ LP+ DG Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 61 IEFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 ++ + +R + + +P+I+LSAR E +D++ L+ GADDY++KPF EL AR++ LR Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 118 RHSATTAPDPL-VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + P PL + + D+ + + ++ E+V LT EF LL + + +V ++ L Sbjct: 121 EERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 L +VWG + + +++ +LR KL+ + G+GYR + Sbjct: 181 LQKVWGYTVSGDTRTVDVHISNLRSKLKSVSP---IIESVRGVGYRLAV 226 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 7/232 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVEDE + + + L+ +G +V A + + + +L ILD+ LPD DG Sbjct: 1 MRKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E ++ +R+ ++ PVI+L+A+ + DK+ GADDY+ KPF + EL AR++ LRR Sbjct: 61 SEVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTE 120 Query: 121 ATT-------APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 T + ++ + ++ + + L EF LL L +V+T Sbjct: 121 GTHHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTI 180 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 Q+ VWG + + + +++ LR K+E+DPA P+ T G+GYR + Sbjct: 181 AQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLVC 232 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 7/230 (3%) Query: 1 MTNV--LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M + LI +DE I + LE +G V +A + + T+ DL++LD+ +P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 DG E R +R +P+I LSA++ + DK+ L GADDY++KPF EL AR+ LRR Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 119 -----HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 ++ V +D R + E++ LTP EF +L +L ++ KV Sbjct: 121 FLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNV 180 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + QVW + E + + +++ LR+KL +D + + T G+GY F Sbjct: 181 ENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 2/226 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 +LIV+DEQ + ++ ALE +G + A TL+ G T +P L ILD+ LPDG+G Sbjct: 4 PRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGEG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + + +R S +P++ LSA+SEE DK+ L G DDY++KPF E+ R++ LRR S Sbjct: 64 YQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVS 123 Query: 121 ATTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 AP ++ ++ E + LT E LLA L N ++L++ L Q Sbjct: 124 MMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQ 183 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWG + + + +++ LR+K+E +P+ P + T G+GYR + Sbjct: 184 VWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 319 bits (819), Expect = 4e-86, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 4/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VLI+EDE+ I ++ L+ + + + + D +ILDL LPD G Sbjct: 6 KRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGE 65 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E + +R S VP+++L+A+ EESD+I LD GADDY++KPF EL AR+R +RR + Sbjct: 66 EICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 122 TTAPDPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 L++ D+ VDL + +E V LT EF+LL++ + N+GKV ++ +L+ + Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 V G + V + + +++ +LR K+E + ++ +T G+GYRF+ Sbjct: 186 VLGYDYVGYDRTIDVHIKNLRHKIECEYY--KYIVTVYGVGYRFV 228 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 319 bits (819), Expect = 4e-86, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 128/222 (57%), Gaps = 4/222 (1%) Query: 6 IVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIR 65 +VED+ +I + L +G + A + G+ DL++LD+ LP +G++F++ Sbjct: 2 LVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFLK 61 Query: 66 DLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAP 125 +R+ S +PV+++SA+ + DK L GADDY++KPF + EL AR++ A+RR + +A Sbjct: 62 IIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSAE 121 Query: 126 DP----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 +P +++ + +D+ + + E + LT E++LL + +N KV T+ Q+ VW Sbjct: 122 EPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRSVW 181 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + + ++M LR+K+E DP+ P++ T GIGY+ Sbjct: 182 NEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 318 bits (817), Expect = 7e-86, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 4/227 (1%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M VLI+ED++ IR L+ VF A+ G+ P L++LD+ LP Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G E + +R S P+I LS + + DK+ LDAGADDYL+KPF EL+AR++ LRR Sbjct: 61 GYEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRS 120 Query: 120 ---SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + P + ++ +DL + + +V L E +LL +L+ N V + ++ Sbjct: 121 KMNANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKI 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +Q+WG + + +++ +LR+K+E++P++P+ T G GY+F Sbjct: 181 YDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+ EDE AIR F+ L+ G VFEA + + D+++LD+ +P+ DG Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 E +R V +I+L+AR+ E DKI L GADDY++KPF GEL AR++ LRR Sbjct: 61 FEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRV 120 Query: 120 SATTAPDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 D +K +DLAA+ + + + + LTP E+ L+ L+ N VL++ LL+ Sbjct: 121 EKVKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLD 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG N + + + LRQK+E DP+ P + T G GY++ Sbjct: 181 AVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKW 225 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 19/242 (7%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VEDE I + + L +G V + DLIILDL LP DG Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 61 IEFIRDLRQWSA--VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR- 117 +E R +R S+ +PVI+L+A+S+E +KI L+ GADDY++KPF EL AR++ LR Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 118 RH----------------SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLA 161 R + + K +++ + +E+ LTP EF LL Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 162 VLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 +++ N+G+VLT+ +LL ++WG + + + + +++ HLRQK+ + P T GIGY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 222 RF 223 R Sbjct: 241 RL 242 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 N+LIV+DE+ I + L+ +G V++ T + L ++ D+ ILD+ LPD DG Sbjct: 4 NILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDGFH 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR---RH 119 + +R+ P+I+L+A+ E+ DKI L GADDY++KPF E+ AR++ LR R+ Sbjct: 64 ICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123 Query: 120 SATTAPDPLV----KFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + + ++ + ++ +EV LTPIEF +L L + GKV+ + Sbjct: 124 NNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSEE 183 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 L VWG +++++ + ++G LR+K+ + P+ T G+GY Sbjct: 184 LFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 136/221 (61%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+++DE +R LR+ L+ +G VFEA+ + GL A KPDLI+LD+ +P+ G++ Sbjct: 4 TILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLD 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 F+R + + P+I+L+A+ E+ DKI L+ GADDY++KPF E+ AR+R LRR Sbjct: 64 FMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKA 123 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 +++ ++ ++ +A + GE+ V LTP EF +LA L+ + G V ++ LL++ G Sbjct: 124 QPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRTSG 183 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + +++ +LR K+E DP PR+ T G+GYRF Sbjct: 184 QAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 15/237 (6%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 N+++ +DE+ I R LE +G V+ AE + + +PDL++LDL +P DG+ Sbjct: 3 ANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGL 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS- 120 E +RQ P+I+L+AR EE D++ L GADDY++KPF EL R+ LRR Sbjct: 63 EVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122 Query: 121 --------------ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNN 166 + A + +++ R + E +V LT EF LL +L Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMY 182 Query: 167 AGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 GKV ++ QLLNQVW + + +++ LR+K+E +P+ P T GIGY+ Sbjct: 183 PGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 4/227 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +LI++DE IR L L+ G +EA L + + DL+I D+ +P DG Sbjct: 11 IKTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDG 70 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 E ++ +R S VP + LSA+S++ DKI L GADDY+ KPF E+ +R++ RR Sbjct: 71 YELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMD 130 Query: 119 --HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 +++ DV +DL + +++ ++ +T EF++L++L+ +AG+V T+ + Sbjct: 131 VFSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASI 190 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + + +Y+ LR+K+E +P +P + IT G+GYRF Sbjct: 191 YEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRF 237 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 7/228 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLIV+DE +IR+ L T L G V A + L PD++ILD+ +P DG Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +++R+ S VP+I+L+A + +D+I L+ GADDY+ KPF EL+AR+R LRR + Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 123 T-----APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 ++ F+ +T+DL R I++ E + LT +EF LL +L++ +G+ ++ +L Sbjct: 136 AFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADIL 195 Query: 178 NQVWGPNAV--EHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + +++ LR KLE DP+ P +T G GY F Sbjct: 196 QEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M VLI +DE+ I L LE DG ++ A L + D+ I+D+ +P DG Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +R +R+ +PVI+LSA+SE DKI LD GADDY++KPF E+ AR++ LRR++ Sbjct: 61 YHLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 121 ATTAPDP-----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + + ++ + +++ +++ EV+LT E+++L LL N GKV T++Q Sbjct: 121 KSMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQ 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VW + + +++ +LR K+E D P + T G+GY+ Sbjct: 181 IFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKL 228 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 131/223 (58%), Gaps = 2/223 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M VLIVED +R +R LE G RV A Q GLLEA +PDL++LD+ +P DG Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +EF+R R VPVI L+AR E DK+ L+ GADDY++KPF + EL AR+R LRR S Sbjct: 82 LEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRR-S 140 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + P+ +++ ++ +D R E V LT EF L++ L G+V T+ +LL Q+ Sbjct: 141 SEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQL 200 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 A+ + +++ +LR K+E +P +PR T G+GYR Sbjct: 201 -QEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRL 242 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 6/229 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+V+DE AI LR LE + +V A + L A +K D IILDL LP DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 I + +R+ P+++L+A+ E+DKI L+ GADDY++KPF E+ AR+R RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 -----SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + D++VD + +G+ ++HLTP EF LL ++ KV ++ Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +LLN VWG + + + I + HLR+K+E +P P + T G GY+ Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQL 229 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 114/221 (51%), Gaps = 1/221 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VED+ + T L G V A L A PDLI+LD LP DG E Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R VP+I+L+A ++IA L+AGADDY+SKPF EL R++ LRR Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 P+ + T+D +A I R EE+ LT EF LLA LL + G+ ++ QLL VWG Sbjct: 161 LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWG 220 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + + LR+K+E DP P T G+GYR Sbjct: 221 WEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 9/231 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +LI ED+ I + L +G ++ +A + + T DL+ILD+ +P DG Sbjct: 6 TTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGY 65 Query: 62 EFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E +R +R+ +P+I LSA++ + DKI+ L GADDY++KPF EL AR+ LRR Sbjct: 66 EVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFR 125 Query: 121 ATTAP-------DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 P + +T+D R + + + LTP EF +L +L ++ KV + Sbjct: 126 QLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSA 185 Query: 174 RQLLNQVWGPNAVEH-SHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + QVWG E + + +++ LR+KL +D + T G+GY F Sbjct: 186 EHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M ++IV+DEQ +R L+ G AE +R L PDLI+LD+ +P DG Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E R++R ++PVI LS R DK+A + GADDY++KPF EL+AR++ +R ++ Sbjct: 61 LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYA 120 Query: 121 ATTAPD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + P +++ + +D A E + LT E +LL + +V T QL ++ Sbjct: 121 MNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDR 180 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +W +A + +++++ HLR+K+E+ P RP + T G GYRF+ Sbjct: 181 IWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFV 225 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 10/227 (4%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L++ED ++ +G G DLIILD+ LP DG+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R+ S VP+I+L+A+ ESD++ + GADDY++KPF L AR++ +RR+ AT Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 123 TA---PDPLVKFSDVTVDLAARVIHRGEEEVH-LTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + +++ T++ R + E V LTP EF LL L+ N +V ++ QLL Sbjct: 122 GKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLE 181 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKL--EQDPARPRHFITETGIGYRF 223 QVWG + +++ LR+KL E P T G+GY+F Sbjct: 182 QVWGYQFYGDERTVDVHIKRLRKKLASEDKP----FLYTVWGVGYKF 224 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DEQ I ++ LE DG V A + L + LI+LDL LP G E Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R S+VP+I+L+A++EE +KI + GADDYL+KPF + EL R+R LRR Sbjct: 66 VCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYRD 125 Query: 123 TAP-DPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 +P ++ F D+ VD+ V+ + V+LT EF++L V L+N +V ++ +L+ + Sbjct: 126 FSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVEK 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +G N + Y+ ++RQK+E + P + T G+GY+F+ Sbjct: 186 AFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFI 230 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+D++A+ + L DG + L + KPDL++LDL LP DGI Sbjct: 32 ARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGI 91 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R +R S VP+++L+A+S+ SD + L++GADDY+ KPF EL AR+R LR Sbjct: 92 EVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR--PG 149 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 ++ +DVT+D+A ++ RG E + LTP+EF LL L +V T+ LL QVW Sbjct: 150 DQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVW 209 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 G + + +++ LR K+E+DP P +T G+GY+ Sbjct: 210 GYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 122/228 (53%), Gaps = 6/228 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M+ +LI++DE+ I L+ +LE G V A + G+ +A PDLI+LD+ +PD DG Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKA-KEMPDLIVLDIMMPDIDG 59 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R +R P++ LSA+ E D+I G DDY+ KPF + EL AR+ LRR Sbjct: 60 YEVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREK 119 Query: 121 A-----TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 L+ F ++T+DL +R + + LT EF +L +L + G+V ++ Q Sbjct: 120 RAILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQ 179 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +VWG +A + + ++ ++R K+E + T GIGY++ Sbjct: 180 IYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKW 227 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 97/224 (43%), Positives = 137/224 (61%), Gaps = 3/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++L+VED+ +I L L +G V +A+ + GL A PDL++LD+ LP+ +G E Sbjct: 7 SILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFE 66 Query: 63 FIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 +++LRQ PV+VLSA+ E+DKI L+ GADDY+ KPFG+ EL AR++ LRR Sbjct: 67 VLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYP 126 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 SA P V F DV+VD+AAR + R V LT EF+LLA L + G+ T+ +LL+ Sbjct: 127 SAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSG 186 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + +M LR K E DP PRHF+T G+GYRF Sbjct: 187 AWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRF 230 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 6 IVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIR 65 +VEDE + + + LE G V A R + A PD++ILDLGLP DGIE R Sbjct: 68 VVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVCR 127 Query: 66 DLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAP 125 LR +S V++L+ARS+E D + L GADDY++KPF EL ARL+ LRR T Sbjct: 128 RLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKTGQ 187 Query: 126 -------DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 ++ F +++D+ AR + +E V LT EF LLA L V ++RQL++ Sbjct: 188 RADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQLID 247 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + V H + +++GHLR+KL+ D +R ++ T G+GYR Sbjct: 248 RVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 315 bits (809), Expect = 6e-85, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 130/227 (57%), Gaps = 4/227 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+++DE AIR L+ +G +V AE +RG++E + +PDL++LDL LPD G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + +++ + S +PVI++SA+ E DK+ L+ GA+DY++KPF EL AR++V LRR+ Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 121 ATTAPD----PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + ++ ++ +V+ + ++ LT E+ +L L K+ T+ +L Sbjct: 121 HNDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDEL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L VWG + S + + + LR+K+E+D P++ T G GY+ Sbjct: 181 LEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQL 227 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 315 bits (809), Expect = 6e-85, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 1/224 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LI+EDE +R L+ LEG+G RV A + GL KPDL++LD+ +P DG Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 61 IEFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +LR+ + VP+++L+A+ + D++ LDAGADDYL KPF EL AR+R LRRH Sbjct: 61 FALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRH 120 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 ++F +V +D+ + RG +++H T E+ +L +L G+ +++ + L+ Sbjct: 121 QREKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDV 180 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG A + + ++ LR K+E DP +PR T G+GYR Sbjct: 181 VWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRL 224 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 315 bits (809), Expect = 6e-85, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 NVLIVEDE+ I + L+ G V+ A GL + L I+D+ +P DGI Sbjct: 5 NVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGIT 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 + LR+ PVI+L+A+SEE DKI L+ GADDY++KPF EL AR+ LRR+ Sbjct: 65 MVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSKY 124 Query: 120 ----SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 S + + ++ + + E + +TPIEF++L +L+ N G+V + + Sbjct: 125 LSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAEE 184 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + +VW A+ ++ + +++ ++R+K+E D P++ G+GY+ Sbjct: 185 IYEKVWNEEAI-NTDTVMVHVRNIREKIEIDTKNPKYLKVVWGVGYK 230 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 11/232 (4%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+D+ I + L + + + + +P+LI+LDL LP DG E Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R++R+ S +P+I+LSA+ E DK+ L+ GADDY+ KPF EL AR++ LRR + Sbjct: 66 VCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVPS 125 Query: 123 TAPDP---------LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 + V + D+ ++ + + + + + P E L L ++ +V T+ Sbjct: 126 QSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFTR 185 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 QLL+ +WG + + + +++ LR+K++ + T GIGY+F + Sbjct: 186 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKFEV 235 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L++ED+++I ++ LE + +V + G L+++DL LP DG Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT- 122 +R S VP+IV+SA+ + DK+ + GADDY++KPF EL AR++ +RR+ + Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 + ++F DV +D+ R + E++ LT EF LL L N+ G+V T+ +L VW Sbjct: 123 PQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAVWN 182 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + S + +++ ++R KL+ P++ T G+GY+F+ Sbjct: 183 GDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFI 223 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 3/223 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L++ED+ I R L L+ +G VF A + GL A D+I+LD+ LP G+E Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ S VP+I+L+A+ E SDK+ D GADDY++KPF EL AR++ LRR + Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 123 TAPDPLVKFSDVTVDLAARVIHRG--EEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + +F D+T++ + + R + + L+ EF LL L+ N G VL++ ++L +V Sbjct: 124 VVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEEV 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + + L +Y+ +LR K+++ P + T GIG+ F Sbjct: 184 WGFDYIGNDNILDLYIKYLRDKIDR-PYERKFIQTVRGIGFIF 225 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+ +DE+ +R L + LE +G A + L++LD+ +P+ DG Sbjct: 5 MFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDG 64 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + +R++S VP+I+L+ARSEE D+I L GADDY++KPF EL AR+ LRR Sbjct: 65 LTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTH 124 Query: 121 A-TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + + +++D+ R + + V+LT EF LL + + N KV ++ QLL+Q Sbjct: 125 SFSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQ 184 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +WG + + ++ LR KL + + T GIGY+F Sbjct: 185 IWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKF 225 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 127/223 (56%), Gaps = 2/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+V+D+ ++R +R L+ G V A + L A RKPDL++LDL LP G+ Sbjct: 9 ARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGL 68 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-HS 120 E R LR+ VPV++L+A EESD++ L+ GADDY+ KPF EL R+ LRR + Sbjct: 69 EVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + A ++ + +DL AR E+ LT EF LL LL + G+ ++ +LL QV Sbjct: 129 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + ++M LR+K+E DPARP T G+GYR+ Sbjct: 189 WGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRY 230 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 1 MTN--VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M N +L+VED+ I +R LE G R A A +PDL++LD LP Sbjct: 9 MPNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGV 68 Query: 59 DGIEFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 DG+ R+ PV++L+AR+EE ++ AL GADDYL KPF EL AR++ LR Sbjct: 69 DGLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLR 128 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R A+ D K + VD R + + L EF LLA L ++ G+V ++ +LL Sbjct: 129 RAYASGYRDCSPKNG-LLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELL 187 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + +++ LR+KLE DP RP + +T G+GY+F Sbjct: 188 ERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKF 233 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 ++LIV+D+Q I RF+ L +G +V A + L L ILD+ +P DGI Sbjct: 19 NSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGI 78 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 E R +R+ ++P++ LSA+S + DK+ GADDY+ KPF E AR++ LRR+ Sbjct: 79 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138 Query: 120 ---SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 +A + + + +D +R + E ++LT E+ +L ++ +V T ++ Sbjct: 139 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEI 198 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 VW A E ++ + +++ LR K+E++P P+ G+GY+ Sbjct: 199 YESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYK 244 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 130/234 (55%), Gaps = 10/234 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+VEDE+ IRR LR LE + V EAE + L + DL+ILD+ +P DG Sbjct: 5 ATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGW 64 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R +R++S VP++ L+AR EESD++ + GADDY+ KPF EL R++ LRR S+ Sbjct: 65 TTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSS 124 Query: 122 TT---------APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 T P+ + F ++++ R E + L+P+E+ LL L NAG+VL+ Sbjct: 125 TPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLS 184 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ-DPARPRHFITETGIGYRFML 225 + LL++VWG S + ++ LR+KL + PA + T G GY+F + Sbjct: 185 RDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEV 238 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 ++LIV+DE+AI ++ LE +G R + +A + + + K DLI+LD+ + G Sbjct: 4 ASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 E +R++S P+ L+ARS ++DK++ GADDY++KPF EL AR+R L+R Sbjct: 64 FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 123 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 S T+ + + T + G E V + +LL + VL++ Q+ Sbjct: 124 QSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 183 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +VWG + ++ + +++ LR+K+E+DP+ P + +T G+GYRF+ Sbjct: 184 KVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFI 229 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPD-GDG 60 +LIV+DE + R ++ L G V A + + + DL+ILD+ LP +G Sbjct: 4 KTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGPLNG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + +R++S +P+I+L+ R+ E D+I DAGADDY++KPF + EL R++ LRR Sbjct: 64 FEVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRRSH 123 Query: 121 ATTA--PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + P+ KF D+ ++ A + + EV LT E+++L L NAGKV+T LL Sbjct: 124 PSEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHEDLLT 183 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +VWG HYLR Y+ LR+K+E DP P++ + + GIGY L Sbjct: 184 RVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYLAL 230 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 135/226 (59%), Gaps = 6/226 (2%) Query: 1 MTN--VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M+N +L+VEDE + +F+ L+ +G V GL A PDLI+LD LP Sbjct: 1 MSNPCILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGI 60 Query: 59 DGIEFIRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 G++ + LRQ S VP+I+L+A+ + SD++A LDAGADDY+ KPF + EL AR+R LR Sbjct: 61 SGLDICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLR 120 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R+ L++F D++++ R + RG + LT EF LL L+++ +VL++ Q+L Sbjct: 121 RNH--EEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQIL 178 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + S+ + +Y+ +LR KLE + + R T G+GY Sbjct: 179 ERVWGYDFMGDSNIIEVYVRYLRLKLEAEQEK-RLIQTVRGVGYVL 223 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 4/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 V +VED+ I R +R LEG G V T + E+ P+L +LD+ +P DG+E Sbjct: 4 TVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADGLE 63 Query: 63 FIRDLRQWSAV---PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 R +R ++ PVI L+A++ E+DKIA LD GADDY++KPF EL AR++ LRR Sbjct: 64 ICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRRF 123 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 P +V D+ +D A + V T EFRLL L + G+V T+ QLL+ Sbjct: 124 ER-PLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLLDA 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VW + +Y+ +R+K+E++P PR+ T G GYRF + Sbjct: 183 VWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEV 228 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 L+VED+ I +R L + V A Q+GL A T+ +LIILDL LP DG E Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 65 RDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R LR + P+I+L+A++EESDK+ L GADDYL+KPF E AR+ LRR + Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 PD + F +T+ + ++ V LTP EF LL +L NAG+ L + QLL QVW Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + + ++ LRQK+ Q T G+GY+ + Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEV 232 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DE +IRR L T L G V A + L+ P L++LD+ +P DG Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 ++LR+ S VP+I+L+A E D+I L+ GADDY+ KPF EL+AR+R LRR Sbjct: 67 VCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKI 126 Query: 123 TA-----PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 T ++ + +D R +++ E V LT +EF LL +L++ AG+ ++ +L Sbjct: 127 TTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASIL 186 Query: 178 NQVWGPNAV--EHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + +++ LR KLE DP+ P +T G GY F Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 127/223 (56%), Gaps = 2/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LI +D+ I + + +LE +G RV A+ ++ + A T KPD++I+D+ +P DG+E Sbjct: 5 TILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + ++ VP+I+LSA+ + DKI G DDY +KPF EL R++ LRR A Sbjct: 65 ASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAV 124 Query: 123 TAP--DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ++ + + ++ + R++ +EV LT EF +L ++ ++ ++ ++ QLL Q+ Sbjct: 125 PEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQI 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 W + + +++ LR+K+E+D A+P T G+GY+F Sbjct: 185 WESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKF 227 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 134/229 (58%), Gaps = 13/229 (5%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +VL+VEDE A+ L+ LE +G V A + L++A PDL+++D LP GI Sbjct: 3 AHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGI 62 Query: 62 EFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 E R LR + + VP+I+L+AR EE+D++ LD GADDY+ KPF + EL AR+R LRR Sbjct: 63 EVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRR 122 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A D +++ D+T+D A + R + E+HL P EFRLL L+ + G+V ++ QLL+ Sbjct: 123 IRPGLAED-VIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLD 181 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKL----EQDPARPRHFITETGIGYRF 223 VWG + + + +++G LR+ L E+DP T GY F Sbjct: 182 AVWGSDVYVEARTVDVHVGRLRKALNNKEERDP-----IRTVRSAGYAF 225 >UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteobacteria RepID=Q0K8J0_RALEH Length = 231 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 143/223 (64%), Positives = 172/223 (77%), Gaps = 1/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+VEDE IRRF+R AL+ +G V EAE+LQRGL+EA TR+PDL+ILDLGLPDGDG+ Sbjct: 7 PTVLLVEDEPHIRRFVRAALQDEGCTVHEAESLQRGLIEAGTRQPDLVILDLGLPDGDGV 66 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 I DLR W+ VPV+VLSAR+ E++KI ALDAGADDYL+KPFG+GEL ARLRV RRH Sbjct: 67 SMIGDLRTWTEVPVLVLSARTGEAEKIRALDAGADDYLTKPFGVGELVARLRVLQRRHVR 126 Query: 122 TTAPDPL-VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 A V F ++ VDLA R + R E VHLTPIEFRLLAVLL + GKV+T R+LL +V Sbjct: 127 AGAQGRAQVAFGEIAVDLANRQVTRAGEPVHLTPIEFRLLAVLLAHRGKVMTHRELLREV 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WGP+ + S YLR+YMGHLR KLE DPARP + +TE G+GYRF Sbjct: 187 WGPSHADSSQYLRVYMGHLRHKLEADPARPAYLLTEIGVGYRF 229 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVED+ +I + LE V GL E K DLIILD+ LP DG Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA----- 115 + +R + VPV+++SA+ EE DKI L GADDY++KPF GEL AR++ Sbjct: 61 FDILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 116 -LRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 L+ + + ++ + ++ +R + ++EV+L EF LL + +V + Sbjct: 121 RLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKD 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +L +WG +++ S + +++ +R+K+E +P++P++ T G+GYR + Sbjct: 181 ELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIRV 231 >UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteobacteria RepID=A8HY28_AZOC5 Length = 228 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 111/222 (50%), Positives = 145/222 (65%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DE AI RFL AL G V A+ L AT PD ++LDLGLPD DG E Sbjct: 5 RILVVDDEPAIHRFLSPALTAAGYGVARADDAAGALRAIATHPPDAVLLDLGLPDMDGKE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR-RHSA 121 I +RQ+S VP+IVLSAR E++KI ALD GADD+++KPFG+GEL AR+R ALR R Sbjct: 65 VIGRVRQFSQVPIIVLSARDREAEKIEALDLGADDFVNKPFGVGELMARIRAALRQRGGD 124 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T A D ++K + +D + R +E+ LTP EF LL L + G+VLT RQ+L VW Sbjct: 125 THAADVVLKVGPLEIDRPRHRVTRDGQEIKLTPKEFELLVYLARHPGRVLTHRQILGAVW 184 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 GP ++ + YLR+Y+G LRQ+LE +PA P +TE GIGYR Sbjct: 185 GPAHLDDTQYLRVYVGQLRQRLEVEPATPTLILTEPGIGYRM 226 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLI+EDEQ + + L+ LE +G +V+ + GL + PD+++LDL LP+ G E Sbjct: 9 TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEE 68 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R+ P+++L+A+ E +KI L GADDY+ KP E+ ARL+ LRR Sbjct: 69 IARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE 128 Query: 123 TA--PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ++ ++T+D A+ I+ E+ LT EF +L+ L KV ++ L +++ Sbjct: 129 PGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLADRI 188 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +G S + ++ +LR+K+EQ+P +P T G GY+F Sbjct: 189 YGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_Q2W608 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W608_MAGSA Length = 228 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 104/223 (46%), Positives = 143/223 (64%), Gaps = 1/223 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M+ +L+V+DE IR+FLR +L +G V EAE+ GL PDL+ILDLGLPD DG Sbjct: 1 MSRILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAACPDLLILDLGLPDMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E I +RQ +P+IVLS R++E DK+ ALD GA+DY++KPFG+ EL AR+R LR H Sbjct: 61 QEIISAVRQDCDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLRPHL 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +V+ + +DL V+ + E+HL+ E+ LLA + VLT + +L V Sbjct: 121 PKEG-GQVVESGSLKIDLDRLVVRKAGSEIHLSRKEWDLLAFFARHPDHVLTHKHILKGV 179 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WGP V+ + YLR+Y+ LRQKLE DPARPR +T+ G+GYR Sbjct: 180 WGPAHVDDTAYLRVYVNQLRQKLEDDPARPRLIVTDPGVGYRL 222 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 7/226 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+ +D+ +R +R E + + A + L +PD++ILD+ +P DG E Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R++R+ P+I+L+A+ EE D++ L+ GADDY++KPF E+ AR+R +RR Sbjct: 94 ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQPK 153 Query: 123 TAPD-----PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + F +T+DL R + E+V P EF LL L+ + G V ++ QLL Sbjct: 154 PKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQLL 213 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 QVWG + + +++ +RQ+L++ P T GIGY+F Sbjct: 214 EQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKF 257 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 128/229 (55%), Gaps = 6/229 (2%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M N +LIVED+ I L ++ V L +A + DLI+LDL +P + Sbjct: 6 MANQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLN 65 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G+E R+LR+ P+I+++A++EE DK+ L+ GADDY++KPF I EL+AR + +RR Sbjct: 66 GVEVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRS 125 Query: 120 SATTAPDP-----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 A + F D+ V++ R + +++ L+P EF LL +L N G+ ++ Sbjct: 126 DAANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRS 185 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +LL+ +WG N + H + ++ LR K+E D P + +T GIGYRF Sbjct: 186 ELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRF 234 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 3/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+D+Q + ++ E +G V + L PD++ILD+ LP DG+ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R LR +P+I+L+A+ EE+D++ L+ GADDY++KPF EL AR++ LRR A Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 123 -TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 A + +K+ + + R + E +TP EF LL L N +V T+ +LL VW Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + +++ LR KL P + T G+GY+F Sbjct: 186 GYDYFGDQRTVDVHIRRLRTKLASLPHE--YLQTVWGVGYKF 225 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 95/225 (42%), Positives = 139/225 (61%), Gaps = 3/225 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+++D++++R + LE +G R +A + G +A T KPDL+++DL LP G Sbjct: 12 MQTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSG 71 Query: 61 IEFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 E + LR A P+IVLSA +E DK+ L+ GADDY+ KPFG EL AR+R LRR Sbjct: 72 TEICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRR- 130 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 A+T ++ FS+V VD RV+ R E++ LTP E+ LL L+N + LT+ +LN Sbjct: 131 -ASTDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNS 189 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VWG ++ + ++ LRQKLE DP P+HF+T G+GYRF+ Sbjct: 190 VWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFI 234 >UniRef50_D2R313 Two component transcriptional regulator, winged helix family n=32 Tax=Bacteria RepID=D2R313_9PLAN Length = 235 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 115/220 (52%), Positives = 156/220 (70%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLI+EDE IR+ LR +L +G R+ EA + GL A + PDLI+LDLGLPD DG E Sbjct: 13 VLIIEDEAPIRKMLRASLTSEGYRIQEASSAAEGLKIATSPPPDLILLDLGLPDRDGQEV 72 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + LR+W P+I+LSAR +ES KI ALD GADDY++KPF +GEL AR+R ALR T Sbjct: 73 LEQLREWYTSPIIILSARDQESQKIKALDHGADDYVTKPFSMGELLARMRTALRHSHRTG 132 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 D+ VD A+R+++R +EEVHLTP+E++LL ++ +AGKVLT R LL +VWGP Sbjct: 133 TEATATTIGDLKVDFASRLVYRKQEEVHLTPLEYKLLITMIKHAGKVLTHRFLLREVWGP 192 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +HYLR+++ LR+K+E DPARP++ +TE G+GYRF Sbjct: 193 QDSQENHYLRVFVAGLRRKIEVDPARPQYILTEQGVGYRF 232 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 6/228 (2%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M+ +LIV+DE I + L+ + VF+ T + L + DL ILD+ LP Sbjct: 1 MSDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTS 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G+ + +R P+I+L+ + E DKI L GADDY++KPF EL AR++ LRR+ Sbjct: 61 GLTICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRY 120 Query: 120 SA----TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + ++ S + +++ + E+++ LTP EF +L +L N G V++ Sbjct: 121 KKFSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSEL 180 Query: 176 LLNQVWGPNAVE-HSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 L +++WG ++ + +++ HLR+K+ P++ T G+GY+ Sbjct: 181 LFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYK 228 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DE+ IR+ L+ LE + A + L + PDLIILDL LP+ G Sbjct: 3 PKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGE 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E + +RQ P+++L+A+ E DK+ GADDYL KPF + EL AR++ LRR + Sbjct: 63 EVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 122 TTAPDPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + + + + + LT EF +L L+ N G+V T+ QL + Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 V G + + ++ ++R+KL + + + IT G+GY+F Sbjct: 183 VMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKF 224 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 1/222 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +LI++D++ I +R L +G V A + GL +PDLIILD+ +PD DG+ Sbjct: 3 TKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGL 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E + LR+ + +P+++++ +D++ L+ GADDYL KPF EL AR++ LRR Sbjct: 63 EVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 D + FSD+ VDL+ R RG + + EF LL + + +VLT+ L+++VW Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + S+ L +Y+G+LR KLE PR T G GY Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQ-NEPRLIHTVRGAGYVL 223 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 N+LIV+DE+ IR L L+ +G VF+A+ + L + L++LD+ +PD DG Sbjct: 3 NNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGF 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 E +R+ +P+++LSA+ E+ DKI + GADDY+ KPF EL R+R RR Sbjct: 63 EVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYF 122 Query: 120 --SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + D +++ + +D I EV LT EF +L +L N G+V + ++ Sbjct: 123 LNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIF 182 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +VW + ++ + ++M LR KLE+ + T G+GY+ Sbjct: 183 EKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYK 227 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 134/225 (59%), Gaps = 4/225 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M N+LI+EDE+++ ++ LE +G V+ E G+ + DL+ILDL LPD DG Sbjct: 1 MNNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + LR+ S V + +L+A+S SDKI L+ GAD+YL+KP EL AR+ RR Sbjct: 61 EEVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVG 120 Query: 121 ATTAPDPLVKFSD--VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + ++ F+D + +D+ R++ EE++LTP EF +L +L +N GKV T+ ++ Sbjct: 121 --CKKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIE 178 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +G + +++ +LR+K+E+D P++ +T T IGY+F Sbjct: 179 RAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VED+ +I L L +G RV AE +RGL A DLII+D+ LP +G E Sbjct: 18 TVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGFE 77 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R LR + +PVI+LSAR E DK+ L+ GA+DY++KPF + EL AR++ LRR + Sbjct: 78 LLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAI 137 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 A ++ D+ ++ A R + RG+ + LT EF +L L G+VL++ Q+ +VW Sbjct: 138 ARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVW 197 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 GP + ++ LR KLE++ PRH +T G+GYRF+ Sbjct: 198 GPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFV 240 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 129/235 (54%), Gaps = 12/235 (5%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLE--AATRKPDLIILDLGLPD 57 M+ +L++ED+ + + L + V A T Q GL A R DLIILDL LPD Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 58 GDGIEFIRDLR-----QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARL 112 DG++ + +R Q + VP+++L+A+ + +D++ L+ GADDY+SKPF EL AR+ Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 113 RVALRRHSATTAPDP---LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 R LRRH D + F ++V + + ++ V LT +F+LL +AGK Sbjct: 121 RAVLRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGK 180 Query: 170 VLTQRQLLNQVWGPNAVEH-SHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VL + QL + ++ ++ + +++ LR +E +P +P+ IT G+GY+F Sbjct: 181 VLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 309 bits (794), Expect = 3e-83, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 127/230 (55%), Gaps = 9/230 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK-PDLIILDLGLPDGDG 60 +L+V+D++ I + L +G V +A GL + + L ILD+ +P DG Sbjct: 25 AKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMDG 84 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 + ++ +R+ S +PVI+LSA+S + DKI L GADDY++KPF EL AR++ LRR Sbjct: 85 LSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFT 144 Query: 119 ------HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 + + D +++ + ++ + R + ++E LTPIE+ +L +L +N G+V + Sbjct: 145 EFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFS 204 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + +VW A E ++ + +++ LR+K+E D + T G+GY+ Sbjct: 205 TDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYK 254 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M +LIV+DE I + L+ + V++ + + DL +LD+ +P Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G+E + +R+ P+I+L+A+ E DKI L GADDY++KPF E+ AR++ LRR+ Sbjct: 129 GLELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRY 188 Query: 120 S----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 T + +++ + ++ E + LTP EF +LA+L G V++ + Sbjct: 189 KRYNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEE 248 Query: 176 LLNQVWGPNAVE-HSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 L +Q+W ++ + +++ HLR+K+E P++ T G GY+ Sbjct: 249 LFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYK 296 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 309 bits (793), Expect = 4e-83, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 3/227 (1%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M N +L+VED++ + + LR LE +G V A + L LIILDL LP Sbjct: 1 MNNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMS 60 Query: 60 GIEFIRDLRQWSAV-PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 G+E + LR + V P+I+L+AR ++DK+ L GADDYLSKPF I EL AR+ LRR Sbjct: 61 GLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRR 120 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + P V D+ +D + + +++ L+ EF++L L +AG+ + + ++ Sbjct: 121 TH-QSKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQ 179 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +VWG + + + ++ LR KLE +P PR+ +T G GYRF++ Sbjct: 180 EVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVV 226 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 5/227 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DEQ I L L+ + + A L D+I+LD+ LPD DG Sbjct: 18 KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGF 77 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R +R ++ P++ ++ARS + DK+ L G DDY++KPF E+ AR+ V LRR Sbjct: 78 ELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQHM 137 Query: 122 TTAPDP----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 T P+ + F ++ + +I E VH T E LL L + ++ T QL Sbjct: 138 TQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAEQLY 197 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 QVWG ++ + +++ LR+K+E++P P + + GIGY+F+ Sbjct: 198 EQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFI 244 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+D+Q+I LR LE D V A + ++LD+ +P +G Sbjct: 5 NTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGF 64 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-S 120 E R +R S VP++ LSARS++ DKI L G DDY+ K E+ AR++ LRR + Sbjct: 65 ELCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSAT 124 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + ++ + + ++L+ R + V LTP EF LL V + V T QLL + Sbjct: 125 RRPMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAKF 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 W + V H +R+++ LR+K+E DP +P+ + G+GYRF Sbjct: 185 W--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRF 225 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VEDE IR + LE +G + EAE + + PDLI+LD LP G GI+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 63 FIRDLRQWS---AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 FI+ L++ S +PV++L+AR EE D++ L+ GADDY++KPF EL AR++ +RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 S A + +++ +++D + + GEE + + P EF+LL + + +V ++ QLLN Sbjct: 124 SP-MAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG N + +++ LR+ LE R T G GYRF Sbjct: 183 VWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+++D+ I L+ AL +G RV A +G+ A P+L+ILD+ LP DG Sbjct: 3 ARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGW 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E + R+ + P+++LSAR E K+ L+ GADDYL KPF + EL AR++ LRR Sbjct: 63 EICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRR-- 120 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + +++FSD+ +DL AR + R + LT EF LLA +++ +VLT+ Q++++VW Sbjct: 121 -ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVW 179 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + S+ L +Y+ LRQK+E + R T G+GY Sbjct: 180 GLDFTGGSNVLEVYINMLRQKIEDYGS--RIIHTVRGVGYVL 219 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 112/227 (49%), Gaps = 5/227 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +LIVED+ I L L + V + GL D +ILDL LP DG+ Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 62 EFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R R + P+I+ SARS E +I L+ GADDYL+KPF + EL AR++ LRR Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 ATTAPDPL----VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 A + + + + +D AR + LTP EF LL + GKV ++ L Sbjct: 125 ALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LN VWG + H + ++ LR K+E DPA P +T G GY+ Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 124/220 (56%), Gaps = 4/220 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+DE +R +R L + V EA L PDL++LD+ +P DG + Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 ++ +R+ SAVPVI+L+AR +D++ L GADDY++KPF EL AR++ LRR + Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQV 127 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 + ++ +T+ A R + LTP EF LLA+L + G+V ++ +LL+++WGP Sbjct: 128 EANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWGP 187 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + + ++ +LR KL + +T G+GYRF Sbjct: 188 DFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRF 224 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLI++DE+ + + LR + E +G V A + L + D IILDL LP DGI Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +RQ S V +I+L+A+ + DKI L+ GADDY++KPF EL AR+R +RR Sbjct: 78 LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEKG 137 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 +F D+ VD+ +R ++RGEE ++LTP EF +L +L+ N G+V + ++ VWG Sbjct: 138 EVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVWG 197 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + +++ +LR+KL+ + T+ G+GY F Sbjct: 198 EPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYF 237 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 3/228 (1%) Query: 1 MTN---VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPD 57 MT +LIVEDE I L LE G R + R PDL++LD+ LP Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 58 GDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 DG+E ++LR +S +P+I+L+AR EE D++ L+ GADDY+ KPF E+ AR++ LR Sbjct: 61 KDGMEVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLR 120 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R + + + +D +R + G + LTP EF +L V+++ +V ++ +LL Sbjct: 121 RSNTPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELL 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 + G + + ++ +LR+K+++ + G GY+F + Sbjct: 181 DLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFNI 228 >UniRef50_C6BG23 Two component transcriptional regulator, winged helix family n=69 Tax=Bacteria RepID=C6BG23_RALP1 Length = 234 Score = 308 bits (791), Expect = 7e-83, Method: Composition-based stats. Identities = 140/223 (62%), Positives = 174/223 (78%), Gaps = 1/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+++DE IRRF+R ALE +G V EA+ ++RGL+EA TR+PD +ILDLGLPDGDG+ Sbjct: 10 PTVLVIDDEPHIRRFVRAALEEEGCEVHEADRVERGLIEAGTRQPDAVILDLGLPDGDGM 69 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + IR+LR W+ VPV+VLSAR +E DKI ALDAGADDYL+KPFG+GEL ARLRV LRRH+ Sbjct: 70 QLIRELRTWTEVPVLVLSARVDERDKIEALDAGADDYLTKPFGVGELVARLRVLLRRHAK 129 Query: 122 TTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +++F +V VDLA R++ R E VHLTPIE+RLLAVLL G V+T R+LL +V Sbjct: 130 RGEDGGSVIRFGEVEVDLARRLVSRNGEAVHLTPIEYRLLAVLLGRRGTVMTHRELLREV 189 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WGP + SHYLRIYMGHLR KLE+DPARP H +TE G+GYRF Sbjct: 190 WGPAHSDSSHYLRIYMGHLRHKLERDPARPEHLLTEVGVGYRF 232 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 130/229 (56%), Gaps = 11/229 (4%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDG-MRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M ++I+ED+ I + +R LE +G V T + GL P+LI+LD+ LP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 59 DGIEFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 +G E R LR+ + VP+I+L+AR++E+DKI L GADDY++KPF + EL AR+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 LRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 LRR T P + + +D V+ +E++LT EF LL +L + G+VLT+ Sbjct: 121 LRRTEGT--PSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREY 178 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 LL++VWG + + L +++ +RQKL D + T GIGYRF+ Sbjct: 179 LLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFV 223 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 + IVEDE+ I RFL+ LE +G E R DL++LD+ LP DG+ Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ S++P+I+L+A+ E DK+A LD GADDY++KPF I EL AR+R ALR+H Sbjct: 66 ICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVPD 125 Query: 123 TAP---DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + ++ ++ + + E VHLT E+ LL ++ N VLT+ Q+L + Sbjct: 126 NGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILEK 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 VWG + ++ + +Y+ +LR KL D ++ T G+GY Sbjct: 186 VWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 1/224 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VEDEQ + + + L RVF A +L + ++ DL++LD LPDGDG+ Sbjct: 22 QILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLL 81 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LR +PV++L+AR E+D + L++GADDY++KPF + EL+AR + LRRH + Sbjct: 82 LCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLS 141 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 L++F + +DL +R + + + LT EF LL L + +V ++ QLL+ VW Sbjct: 142 AAPTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVW 201 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G H + ++ LR KL P T G+GY+F L Sbjct: 202 GYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFTL 245 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 124/257 (48%), Gaps = 37/257 (14%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LIVEDE I ++ L +G R + L +PDLIILDL +P DG+E Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 64 IRDLRQWSAV--P-VIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 +RQ + + P +++L+AR EE D+I L GADDY+ KPF EL AR+R LRR Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 120 SATTAPDPLVKFSDVTVDLAAR---------------------------------VIHRG 146 + P + + TVDL R + Sbjct: 123 RGSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQLEIA 182 Query: 147 EEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQD 206 + + LTP+EF LLA ++ G+V + QL++++WG + + ++ LR+K+E D Sbjct: 183 QIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKKIEPD 242 Query: 207 PARPRHFITETGIGYRF 223 P+ P T G+GYRF Sbjct: 243 PSAPTFVKTVVGVGYRF 259 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 12/231 (5%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 N+L+VEDE+ I + L G VF+ GL ++ L I+D+ +P DGI Sbjct: 5 NILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGIT 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 LR+ PVI+LSA+SEE DKI L+ GADDY++KPF EL AR+ LRR+ Sbjct: 65 LTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124 Query: 120 --------SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVL 171 + D + + ++ + ++ + + TPIEF++L++L+ NAG+V Sbjct: 125 LNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGRVF 184 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + ++ +VW NA+ ++ + +++ ++R+K+E DP P++ G+GY+ Sbjct: 185 SADEIYERVWNENAI-NTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYK 234 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 + +L+V+DEQ+I F+ L G +V AE L + + DL +LD+ +P +G Sbjct: 6 STILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGY 65 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R+LR + PV+ LSAR E DK+ L+ GADDYL+KPFG+ EL AR+R LRR Sbjct: 66 ELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQM 125 Query: 122 TTAP--DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 P + +T+D A + + LTP EF LL+ L+ AGKV ++ LL + Sbjct: 126 DAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLRE 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + ++ LR KL P T G GYRF Sbjct: 186 AWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRF 229 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 L+V+D+ IR R LE G V EA L + D+++LDL LP+ DG + + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 65 RDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 ++R+ +PVI+L+A +E D+I LD GADDYL KPF EL +R+R LRR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 124 APD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 A + L++ + VD+A R + G++ ++LTP EF LL L ++ +V ++ LL++VWG Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 + S + +++ LRQKL + T G GYRF++ Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVV 224 >UniRef50_A9F790 Two component system transcriptional regulatory protein n=34 Tax=Proteobacteria RepID=A9F790_SORC5 Length = 234 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 134/224 (59%), Positives = 158/224 (70%), Gaps = 4/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL++EDE +RRFLR L G R+ EAET G+ +A TR PDL++LDLGLPD DG+E Sbjct: 8 VLLIEDEPQMRRFLRAMLAARGYRLVEAETGSDGIAQATTRNPDLVLLDLGLPDMDGLEV 67 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR----H 119 R LR+WSAVP+IVLSAR +E DKI ALD GADDYL+KPF GEL ARLRVALR Sbjct: 68 TRRLREWSAVPIIVLSARGQEQDKIDALDGGADDYLTKPFSAGELLARLRVALRHAASAA 127 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 TA D+ VDLA RV+ R EEVHLTPIE++LL L+ +AGKVLT RQLL + Sbjct: 128 RGATAEGHRFAVQDIEVDLARRVVLRAGEEVHLTPIEYKLLTTLIRHAGKVLTHRQLLGE 187 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWGP +HYLR+YM LR KLE+DPARP ITE G+GYR Sbjct: 188 VWGPAYAGQAHYLRVYMAQLRHKLERDPARPLILITEPGVGYRL 231 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LI+ED+ + R L+ E +G V A GL A +P LI+LDL LP +G E Sbjct: 6 TILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYE 65 Query: 63 FIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R LR+ +P+I+L+A+ +ESD + L GADDY++KPF I EL AR+ LRR Sbjct: 66 ICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRK 125 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T + F D D AR + R ++V L+P EF LL L+ NAG+ L++ ++++ VW Sbjct: 126 QT--GTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVW 183 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G ++ + ++ LR K+E DPA PR T GY+F L Sbjct: 184 GYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFEL 227 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 3/223 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DEQ + + + + L G +A T + + EA PD+++LDLGLP+ DG+E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R +S +++L+AR E DKI L GADDY++KPF I EL R+ LRR + Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 123 TAPDPL---VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T P + + D+ +D A + GE V LT EF LL L G+VLT+ L+ + Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 VW V + +++G+LR+KL D T G+GYR Sbjct: 222 VWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIV+DE+ IR LR L +G V EAE ++GL + DL+ILD+ LP DG Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +R++++++ PVI+L+AR + D++ + GADDY++KPF L AR++ LR+ + Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTN 125 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + +++ D+ ++ + + + E+ L P E+ LL L+ N L++ +LLN+V Sbjct: 126 --NMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEV 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WG + + + ++ +LR+K+ ++ T GIGY+ L Sbjct: 184 WGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKLDL 223 >UniRef50_A6LQJ3 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridium RepID=A6LQJ3_CLOB8 Length = 231 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 N+LIVEDE+ IR + + + V+EA + L K DLI+LD+ +P+ DGI Sbjct: 2 NILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIMMPNVDGIS 61 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 I+ +R S +P+I ++A +SDK+ AL GADDYL KP EL AR+ LRR Sbjct: 62 VIQKVRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYKY 121 Query: 123 TAPDPLV-KFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 ++ ++ + +++G ++ L P EF++L +L++N GKV T++Q+ +VW Sbjct: 122 AEHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEEVW 181 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 S+ + +++ H+R+K+E DP P + T GIGY+ Sbjct: 182 EEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYK 222 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+D++ + R + L G V A +GL + +ILD+ +P DG E Sbjct: 12 QILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFE 71 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS-- 120 ++ LR+ S +PV++L+A EE+D+I L+ GADDYL K F EL ARLR RRH Sbjct: 72 MLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRLS 131 Query: 121 -----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + D + ++ + L AR + + ++LTP+E+ LL L +VL++ Q Sbjct: 132 MDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRDQ 191 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+ V G + + +++ LR+KL +DP PR T +GY F Sbjct: 192 LLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 132/221 (59%), Gaps = 3/221 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++LIVEDE+ I R L+ LE +G V GL AA L++LD+ LP G+E Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 63 FIRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R LR+ S PVI+L+AR DK+ LD GA+DY++KPF I EL AR+R ALR++ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 TTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T + + D+ V+ R + RG++EV LTP EF LL +L + +VLT+ Q+L+ V Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 WG + + ++ + +Y+ ++R+KL P + T G+GY Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGY 224 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VEDE+ IR L L +G RV A L KPDLI+LDL LP G E Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 ++ +RQ + P+IVL+AR +E DK+ L+ GADDY++KPF EL R++ LRR Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 + S+++++ G+ + LTP EF++L +L N G+V ++ +L +V+G Sbjct: 125 QVTNV-SISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGD 183 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + + ++ +LR K+E T GIGY+ + Sbjct: 184 IYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLV 224 >UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria RepID=Q1NLC6_9DELT Length = 298 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 2/225 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L ++D+ I + L+ LE G + A +L PDL+ILDL LPDGDG+ Sbjct: 73 ATLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGL 132 Query: 62 EFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 EF L+ +PVI+L+AR + SDK+ L+ GADDY+ KPF EL AR++ LR + Sbjct: 133 EFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANP 192 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 L++ ++ +DL + + +EV+LT EF+LLA L+ N ++T+ ++ ++ Sbjct: 193 GAGTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRL 252 Query: 181 W-GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 W S + +++ HLRQK+E+ P++P H +T G GYRFM Sbjct: 253 WRDSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRFM 297 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 3/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 + +V+DE I +++ LE G V+ A + PDLIILDL LPD G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LR+ S VP+I+L+ +++E D + LD GADDY++KPF +L AR++ LRR Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 129 Query: 122 TTAPDP---LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + +D+ ++ + + V+LTPIE+ +L ++ GK+ T+ +L+ Sbjct: 130 ELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREELII 189 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G N + + ++ +LR K+E +P P + +T GIGY+F Sbjct: 190 VTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 10/231 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +L+ +D IR LR L G+G V EA+ L + DLI+LD+ +P+ +G Sbjct: 3 TRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMNGY 61 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LR+ S VP++ L+A+ +SDK +GADDYL+KPF EL AR++ LRR+ Sbjct: 62 QTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQV 121 Query: 122 TTAP--------DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 + + +T+ A + +EV LT IEF +L+ L+ N ++ + Sbjct: 122 YKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSA 181 Query: 174 RQLLNQVWGPNAVEH-SHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 QL + W ++ + +++ +LR+K+E+DPA P + T G GYRF Sbjct: 182 EQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRF 232 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LI++D++ + ++ +++ + + T + GL + ++ L++LD+ +P DG Sbjct: 18 MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + ++R+ ++P+++ +++++ K+ L AGADDYL+KPF + EL AR+ +RR++ Sbjct: 78 FETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYT 137 Query: 121 ATTAPDPLVK---FSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 ++ F + +DL R L P EF LL + GK+LT++Q+ Sbjct: 138 RFNQQAGAIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIY 197 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + LR+KLE +P+ P++ T GIGYRF Sbjct: 198 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRF 243 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 16/234 (6%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LI +D+Q IR LR LE +G RV EA L DL++LD+ +P DG + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +R +R+ SA+PVI++SA+ ++ DKI LD GADDYL+KPF E AR+R LRR Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 124 APDP--------------LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 A ++ D+T+DL A V+HRG+E + LTP+EFR+L++ +++ G+ Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPGR 190 Query: 170 VLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 V T++Q+ + WG V + + + + LR KL DP + T G+GYR Sbjct: 191 VFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRM 242 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 128/232 (55%), Gaps = 9/232 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA---ATRKPDLIILDLGLPD 57 M ++++VEDE+ + + AL +G RV L +PDLI+LDL LP+ Sbjct: 1 MADIVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPN 60 Query: 58 GDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 DG+E R +RQ P+++L+ARS E D++ L+ GADDYL+KPF + ELQAR+ LR Sbjct: 61 VDGLEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILR 120 Query: 118 RH------SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVL 171 R S T + D+T+D +R + + VHLT EF LL +L N G+V Sbjct: 121 RVEMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVF 180 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++ LL++VWG + V + ++ LR+KL + +T G+GY++ Sbjct: 181 SRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKY 232 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L++ED+ I +++ L + V + T + GL + DLIILD+ LP+ DG Sbjct: 4 KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +++R S VP+++LSA+ +E DK+ L GADDY++KPF + EL+AR+ ++R+ Sbjct: 64 VCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKGY 123 Query: 123 TAPDPLVKF----SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + +T+ + ++E+ LT EF LL VL N KV T+++L Sbjct: 124 NKKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKKELYE 183 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VW + +E ++ + +++ LRQKL+ + P++ T G GY+F+ Sbjct: 184 NVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFI 229 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 ++L++EDE + RF+ T L +G RV A GL A + PDL++LD LP G+ Sbjct: 9 AHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGL 68 Query: 62 EFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R LR VPV++++AR E SD+ A LDAGADDY+ KPF I EL +R+R+ LR Sbjct: 69 EICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR--Q 126 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + D + F D+ +D R + RGE +V LT E+ LL L+ + +VLT++Q+L V Sbjct: 127 PRRSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHV 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + S+ + +Y+ +LR K+E P R T G+GY Sbjct: 187 WGCDFTGDSNIIEVYIRYLRLKIE-GPGEKRLIQTVRGVGYVL 228 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 19/239 (7%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDG 58 M ++LIV+D I L LE +G V AE+ + L + +P+LI+LD+ +P+ Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 G E +R+ +P++ LSA+ + DK+ + GADDY++KPF EL AR+R LRR Sbjct: 61 SGYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 119 HSA-------------TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLN 165 + ++P ++KF D+ + ++ +++ L+ EF+LL L Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 166 NAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 NAG V T+ Q+ ++VWG + + +++ +LR+KLE + T+ G GY F+ Sbjct: 181 NAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFI 235 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+ ED++ I + LE +G V A + + DLII+DL +P G E Sbjct: 5 KILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGEE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 I+ LR S VP+I+LSA+SE+ DK+ L+ GADDY++KPF EL AR+ LRR+ + Sbjct: 65 AIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHSY 124 Query: 123 T--APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 A +++ ++ ++ + ++ ++LT +E+++L L+ N KV + + V Sbjct: 125 DNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEHV 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 W A+ + + +++ +R+K+E DP RP + G+GY+F+ Sbjct: 185 WNEPAI-EAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFV 227 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+ ED+ + L L+ +G V + L EA + DLI+LD+ LP G Sbjct: 3 PRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGF 62 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + + LR+ VP+++L+AR E DK+ L +GADDYL+KPF + EL AR+ LRR Sbjct: 63 DVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAP 122 Query: 121 -ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + + VD + R + V L+ E+RLL L+++ G+ +T+ LL Q Sbjct: 123 VRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQ 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG +A + + +++ LRQKLE++P PR+ T G+GY+ Sbjct: 183 VWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synechococcus RepID=B1XLL2_SYNP2 Length = 249 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LI++D+ AI + LE G V AE +G A +PDL++LDL LP DG Sbjct: 1 MPRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDG 60 Query: 61 IEFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 + +R+ + +P+++L+A + DK+ +AGADDYL+KPF + E+ R+R LR Sbjct: 61 FTVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLR 120 Query: 118 RHSATTAP---DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 R ++ + +T+ ++ + LT +EF LL LL G+ ++ Sbjct: 121 RSDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPS 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 ++L +VWG + + +R+++ HLR KLE +P RP++ T G GY L Sbjct: 181 EILKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLEL 231 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 6/230 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIV+DE ++ +R+ E +G V E + + L+ DL+ILD+GLP DG Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +R +R PVI+L+AR++E D++ L+ GADDY+ KPF EL AR+R LRR Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 120 SATTAPDPLV-----KFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + + + S + +D A R + ++ L P EF LLA L ++ G+V T+ Sbjct: 121 AEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTRE 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 LL QVWG + + + +++ LR KL + A TE GIGYRF+ Sbjct: 181 VLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFI 230 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VLIVEDE IR +R + +G V EA + L + DL ILD+ +P DG+ Sbjct: 3 KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGL 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R++R+ S P+I+L+A+S+E DK+ + GADDY++KPF L A+ + LRR + Sbjct: 63 AVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRR-TG 121 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T ++ F+ +T++ + + EE+ L+P E+ LL L +N G L++ ++L+ VW Sbjct: 122 TLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVW 181 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + + + LR+KL + + T G GY+F + Sbjct: 182 GYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKFEV 222 >UniRef50_A9KJX4 Two component transcriptional regulator, winged helix family n=22 Tax=Bacteria RepID=A9KJX4_CLOPH Length = 245 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 101/227 (44%), Positives = 150/227 (66%), Gaps = 4/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +LI+EDEQ I F+ T L RV ++ T GL + PDLI+LDLGLPD DG+ Sbjct: 4 TTILIIEDEQNICNFIATNLNAYDYRVLKSFTGAEGLSIITSHCPDLILLDLGLPDIDGM 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 E I +R WS +P+IV+SAR++E +K+ ALD GADDY++KPFG EL AR+R ALR + Sbjct: 64 EIISKIRSWSTIPIIVISARTQEKEKVQALDLGADDYITKPFGTSELLARIRTALRHNAS 123 Query: 120 --SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 S P + + D +D ++ G ++VHLT IEF+L+++L NN+G+V+T ++ Sbjct: 124 LESGKNFPPSIFRAKDFVIDFNKHIVMVGGKDVHLTQIEFKLVSLLANNSGRVMTYDSII 183 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++WGP A ++ LR+ M ++R+K+E +PA P++ TE GIGYR + Sbjct: 184 TKIWGPYADRNNQILRVNMANIRRKIEANPADPQYIFTEVGIGYRMI 230 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+V+DE+ I L+ L + + A + L K DL+++D+ +P DG Sbjct: 1 MDRILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 ++ +++R+ +P+I LSA+ E DKI L GADDY++KPF E+ AR++ LRR Sbjct: 61 VKATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFK 120 Query: 120 --SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + + +T++ + ++++ +E+ LTP+E+ +L + N K+LT + + Sbjct: 121 ELGSQQKDQEVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQDIY 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +VW + + +++ HLR+K+E DP+ PR+ G GY+ Sbjct: 181 QEVWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYK 225 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 4/221 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VEDE I RF+ ALE +G V LL D +LD+ LP DGI Sbjct: 47 RVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGIS 106 Query: 63 FIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R LR+ ++P+++LSARSE DKI L++GADDYL KPF + EL ARLR +RR + Sbjct: 107 VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTAG 166 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + K ++T++L R + RG++++ LT EF +L +L+ G+V T+ Q+ +VW Sbjct: 167 IGLS--VYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVW 224 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + ++ + +Y+ LR+K+ + + T G+GY+ Sbjct: 225 NYHFDPGTNLVDVYIQKLRKKI-DEGEEQKLIQTVRGVGYK 264 >UniRef50_C6PZ92 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ92_9CLOT Length = 235 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 132/226 (58%), Gaps = 5/226 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGI 61 +L+VED++ I + LE +G + +A + + + + LI+LDL +P DG Sbjct: 8 KILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPFVDGF 67 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 E IR +RQ S VP++V+SA++ E DKI+A+ GADDY+ KPF + E R++ +RR+ Sbjct: 68 EIIRRVRQKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRYIY 127 Query: 120 --SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 S + + + D+ VD+ A I +G + + +TPIEF +L + L N KV T+ Q+ Sbjct: 128 FNSEQEMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQIY 187 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +WG +A+ + + + +++ LR K+E D P + T G+GY+ Sbjct: 188 DSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKL 233 >UniRef50_Q1IUD6 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IUD6_ACIBL Length = 232 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 93/224 (41%), Positives = 133/224 (59%), Gaps = 1/224 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +L+V+DEQ I R LRT L G + A + PDL+I D+ +P+ DG Sbjct: 2 IARILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDISMPNMDG 61 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + ++LR S VP+IVLS + +E K+ ALD GADDY++KPF I EL AR+R LRR Sbjct: 62 LALCKELRARSQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRRA- 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +++ D +D AA ++ EV LTP EF LL L + GKV+ R LL+ V Sbjct: 121 PVAEIATILELGDFVIDTAAHLVKVRGTEVRLTPKEFDLLLYLARHPGKVVPHRTLLSSV 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG + E S YLR+++G LR+K+E + + R+ +TE IGYRF+ Sbjct: 181 WGADHAEQSEYLRVFVGQLRKKIEGENSNKRYILTERWIGYRFI 224 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 128/220 (58%), Gaps = 4/220 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL++EDE+ I RF+ L +G A GL + PDL+ILDL LP DG+E Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R +R+ S P+I+L+A+ DK+ LD+GADDYL KPF I EL AR+R LRR + Sbjct: 67 ARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPAV 126 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 + V+ +D+ ++L R I RG V L+ EF LL +L N GKV ++ ++ +VW P Sbjct: 127 TGE--VRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-P 183 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 S+ + +Y+G+LR+KLE+ R R T G+GY Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGER-RLIHTVRGVGYVL 222 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 ++LI +D++ + L + + + V+ A L PD+++LD+ +P DG Sbjct: 4 NSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGF 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R RQ++ +P+I LSA+ +E+D++ L GADDY+ KPF + EL AR++ LRR Sbjct: 64 EVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRG 123 Query: 122 TTAPD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + D+ +D + R + + LTP EF LL +L + +V ++ QLL + Sbjct: 124 EVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLLEKA 183 Query: 181 WGPNAV-EHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + ++ +LR+KLE DP++P + +T G+GY+F Sbjct: 184 MGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKF 227 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 128/228 (56%), Gaps = 4/228 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRV---FEAETLQRGLLEAATRKPDLIILDLGLPD 57 MT +L+V+DE IR LR LE +G V + L + DL++LD+ +P Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPG 60 Query: 58 GDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 DG+E +R LR + VI+++ARSEE DK+ L GADDY++KPF E+ AR++ LR Sbjct: 61 MDGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLR 120 Query: 118 RHS-ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 R TT DP ++F ++TVD R I V LT +EF LL L+ G+V ++ QL Sbjct: 121 RRRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 L QVWG + + +++ +LR +L D P T G+GY+F+ Sbjct: 181 LEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFI 228 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VEDE I L L +G V A DLI+LD+ LP DG Sbjct: 1 MIRILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +E R+LR+ P+++L+A++ E++K+ L+ GADDY++KPFG EL+AR++ LRR Sbjct: 61 LEVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRA 120 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 S T + F DV VD A + + V LTPIEF+LL V + G+VL++ QL+ Sbjct: 121 SGDTDLET-CSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAA 179 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + ++ +LR+K+ DPA PR+ G+GYRF Sbjct: 180 TWGRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRF 223 >UniRef50_B8GBC5 Two component transcriptional regulator, winged helix family n=4 Tax=Chloroflexi (class) RepID=B8GBC5_CHLAD Length = 227 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 135/224 (60%), Gaps = 5/224 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+D+ ++ +R LE +G RV + + + ++PDL+ILD+ LPD DG+ Sbjct: 6 TILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQRPDLVILDIMLPDLDGLT 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R++++ P+++L+A++ D I LD GADDYL+KPF EL AR+R LRR + Sbjct: 66 VCQRVREFASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRRVPSV 125 Query: 123 TAPDPLVKFSD--VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P + + +T++ R + + LTP E++LL VL AG V+T QLL V Sbjct: 126 NRP---LTVGNGLITINPRQREVRVRGTIIDLTPTEYQLLMVLAEQAGAVVTHEQLLRAV 182 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG + YL++Y+ HLR+K+E DP +P+ +TE G+GYR + Sbjct: 183 WGNEPNRDNDYLKVYIWHLRRKIEFDPRQPQLLLTEWGVGYRLL 226 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 + ++ED+ I R ++ L+ G + T L +A + P L +LD+ +P GDG++ Sbjct: 4 TIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDGLD 63 Query: 63 FIRDLRQW---SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 R LR S++P+I ++AR+ E+D++ L+ GADDY++KPF EL AR++ LRR Sbjct: 64 VCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRRF 123 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + P L+ F DV +D +A + E T EFRLL L + G+V ++ LL+ Sbjct: 124 ERPSTPS-LISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLLDA 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWG + +Y+ +R+K+E DP PR T G GYRF + Sbjct: 183 VWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFEI 228 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M+ +LIV+D++ I FL+ L +G V + + L + K DLI++D+ +P D Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKID 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G E I+ +R+ + +P+I L+A+ + DKI +G DDY++KPF + EL R+ L+R Sbjct: 61 GFEAIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRV 120 Query: 120 SAT--TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 S + L+K D+ ++L +++GE+E+ LTP EF +L +L N G+V +L Sbjct: 121 STGVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELY 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +VWG +E+ + L ++ +LR+KL ++ T G+GY+ Sbjct: 181 ERVWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYK 225 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLI+ED+ I ++ ++ G A + GL + PD IILD+ LP +G E Sbjct: 6 KVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGWE 65 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + +R + VP+I+L+ + E D I L+ GADDY+ KPF EL AR++ LRR Sbjct: 66 VCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTIL 125 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + + ++F ++ + + + EEV + P E L L N +VLT++QLL++VW Sbjct: 126 SESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRVW 185 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + +++ +R KL + A+ +T G+GYRF Sbjct: 186 GYEFNGDPRTVDVHIKRIRDKLAEHKAK-WSIVTIRGVGYRF 226 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 301 bits (773), Expect = 9e-81, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 V IVEDE I L+ LE G RV A+ + GL + PD +ILDL LPD G E Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R S VP+++LSA+S E D+I + GADDY++KPF E+ RL LRR T Sbjct: 64 ICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTR-T 122 Query: 123 TAPDPLVKFS--DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + F+ ++ +D + + E + LTPIEF ++ ++ + G+V ++ LL ++ Sbjct: 123 LNKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKI 182 Query: 181 WGPNAV-EHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + + +++ +LR+KLE + +P++ +T G+GY+F Sbjct: 183 QEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 301 bits (773), Expect = 9e-81, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 127/230 (55%), Gaps = 10/230 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 ++++V+DE +IR L +L G V A + + +PDLI+LD+ LPD DG Sbjct: 12 ASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGF 71 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 R +RQ A PV+ L+AR + DK+ L G DDY++KPF + E+ AR+R LRR Sbjct: 72 TVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 131 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 DP+++ D+ ++ + + R + + L+P E++LL L++N G+VL++ Q+L+ V Sbjct: 132 EQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 191 Query: 181 WGPNAVEHSHYLRIYMGHLRQKL------EQDPARPR---HFITETGIGY 221 W + + + Y+ +LR+K+ + D + T+ GIGY Sbjct: 192 WQYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGY 241 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DE IR LR ALE V EA Q+ +KPDLI+LD LP GI Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 62 EFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 E R L++ S +P+I+L+A+ EE +K+ L+ GADDY++KPF EL ARL+ LRR Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + +P ++ + +D + + + V + P E+RLL L + +V T+ QLL+ Sbjct: 124 TDSMGISEP-IQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLD 182 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG N + +++ LR+ L + R T G GYRF Sbjct: 183 HVWGGNVYVEERTVDVHIRRLRKALSLE-GHDRFIQTVRGAGYRF 226 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK-PDLIILDLGLPDGD 59 M VL++EDE+ +R L+T LE +G +V AE + GL K +I+LD+ LPD Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G ++ +R+ S VPV++++AR EE DK+ + GADDY+ KPF E+ AR++ L R Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + ++ + +D+ +R + +++ LTP EF LL +LL+N GKV+++ + LN+ Sbjct: 122 YGSQDDGKT-EYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNE 180 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + ++ LR+KL + + T GIGY+ Sbjct: 181 VWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKL 221 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 10/230 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 ++++V+DE +IR L +L G V A + + P+LI++D+ LPD DG Sbjct: 7 ASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGF 66 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 R +RQ VPV+ L+AR + DKI L G DDY++KPF + E+ AR+R LRR Sbjct: 67 TVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ++K +D+ ++ + + R + L+P E++LL L++N G+VL++ Q+LN V Sbjct: 127 EPDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHV 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLE-----QDPARPR----HFITETGIGY 221 W + + + Y+ +LR+K++ D + + T+ GIGY Sbjct: 187 WQYDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGY 236 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M+ +LI++DEQ I L L+ + V++ + + DL ILD+ LPD + Sbjct: 18 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G + +R+ P+I+L+A+ EE+DKI L GADDY++KPF E+ AR++ LRR+ Sbjct: 78 GFSLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRY 137 Query: 120 SATTAP------DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 + + ++ + +++ E V LTP EF +L VLL++AG V++ Sbjct: 138 KKYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSI 197 Query: 174 RQLLNQVWGPNAVE-HSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +L + VW +S + +++ HLR+KL P++ T G+GY+ Sbjct: 198 EELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYK 247 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+ +D+ AI R + AL G ++ L + L+++D+ +P DG Sbjct: 20 KILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGFT 79 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R S VP+I+++AR D + + GADDY++KPF ELQAR+ +RR Sbjct: 80 VTERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEGY 139 Query: 123 T--APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P+V+ D+ +D + E+V+LTP+EF LL L N+G+V + L +V Sbjct: 140 QHRKASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFREV 199 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG V ++ + + + LR+K+E+ P++PR +T G+GY+ Sbjct: 200 WGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKL 242 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 126/229 (55%), Gaps = 5/229 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +LI +D + + T L+ D M A + L + KPDL+ILDL +P G Sbjct: 4 IKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E +++R+ S VP+I+L+A+ EE D+I L+ GADDY+ KPF E+ R++ RR Sbjct: 64 TEVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVG 123 Query: 121 A----TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 T LV F++ +DL I +E++ +TP E ++L +L N G+VL++ ++ Sbjct: 124 NANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEI 183 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 L++VWG + + + + +R+K+ ++ + T GIGY+F + Sbjct: 184 LDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEK-WSIKTVYGIGYKFEV 231 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T VLI++D++ + L L G V A + GL PDL+ILD+ LPD DG+ Sbjct: 16 TRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGL 75 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R++R S +P+I+L+AR + +D+I L+ GADDYL KPF EL AR++ LRR + Sbjct: 76 AVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTR 135 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 A ++ + V+ R + + E+ LT EF LL L N G+V+++ ++L+ Sbjct: 136 DDAE--ALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTR 193 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 G + + + I + LRQKL DP RP T G+GY F+ Sbjct: 194 GIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFI 236 >UniRef50_D1BL25 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BL25_VEIPT Length = 229 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++LI+ED+ I R L G V G+ A DLIILD+ LP+ DG E Sbjct: 4 HILIIEDDLDIANIERDYLMVAGYDVTIMTNGTDGIEAALNTPVDLIILDVMLPEMDGFE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL----RR 118 R +R VP+++++AR ++ DKI L GADDY+ KPF L A+++ L R Sbjct: 64 VCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKRL 123 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 ++ ++ +D + E+EVHL EF+LL L+ N V ++ +L + Sbjct: 124 TERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELYS 183 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +VWG ++ + +++ LR+++E +P+ +H IT G+GY+F+ Sbjct: 184 RVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYKFV 229 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DE I ++ +L+ G V A+ Q L A T +PD ILD+ +P DG Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 63 FIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LR+ P + L+A+ D+I L GADDY++KPF + E+ RLRV LRR + Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 122 TTAPDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + + L+ + D+T+D + + E V L+P EF+LL L+ NA VL++ ++L+ V Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 W + + + Y+ +LR+K+ D PR T G+GY Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKI--DTKEPRLIHTVRGVGYVL 251 >UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97MA9_CLOAB Length = 235 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 135/229 (58%), Gaps = 5/229 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +L+V+DE++I + L T L+ +G V + G+ + P++IILD+ LPD DG Sbjct: 7 SKILLVDDEESILKLLTTVLKKEGFSNVITSTNGMDGVKKCRENAPEIIILDIMLPDIDG 66 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 E R +R +S+VP++ LSA+SE++DKI L GADDY++KPF E+ R++ L+R Sbjct: 67 FEVFRQIRNFSSVPIMFLSAKSEDTDKIIGLGLGADDYITKPFSPKEVALRVKAHLKRIE 126 Query: 119 --HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + T + ++K T+D I + ++ L E LL L+ N +L++ ++ Sbjct: 127 MVKKSLTNRENIIKTEHFTIDFEKGEIIKNDKSTILRAKELLLLKYLVENKNIILSKEKI 186 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +N VW + V + + + +++ LRQKLE DP+ P++ +T G+GY+ L Sbjct: 187 VNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKLKL 235 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L++ED+ + L+ LE +G + T + + +PDLI+LD+ LPD DG Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 61 IEFIRDLRQWSA---VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 ++ + +R+ +PVI L+AR+ E+D+I L+ GA+DY+ KPF + EL AR+++ R Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR 125 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 P L++ V +D + + + LT EFRLL L+N G V ++ QLL Sbjct: 126 ---NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLL 182 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 N VWG + + +Y+ LRQK+E+DPA P + G GY F Sbjct: 183 NAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTF 228 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 9/229 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VED+ IR +R LE + V EAE GL DL+ILD+ +P +G++ Sbjct: 10 KILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLL-DETIDLVILDIMMPKLNGLK 68 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS-- 120 ++R+ S VPV+ L+A+S+ESDK+ L G DDYL+KPF EL R++ LRR+ Sbjct: 69 VCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRRYQVY 128 Query: 121 -----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + +++ + ++ A I +V ++ +E+++L +++ + GK+ + + Sbjct: 129 QGKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIFSTQN 188 Query: 176 LLNQVW-GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VW P + + +++ LR K+E DP +P++ T G GYRF Sbjct: 189 IYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRF 237 >UniRef50_C9XRU4 Two-component system response regulator n=12 Tax=Clostridium RepID=C9XRU4_CLODC Length = 278 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 130/227 (57%), Gaps = 4/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 +L+V+DE+ I + L DG + + +A + PD++ILD+ LPD DG Sbjct: 48 KKILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAISLCKIACPDVVILDIMLPDIDG 107 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 IE + +R++S ++ LS+++++ DKI L +G DDY++KPF E+ R++ LRR Sbjct: 108 IEVCKKIREFSYCSILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQQ 167 Query: 121 AT---TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + ++K D+T+D+ +++ E+ LT E+ LL+ + N K++ + +L Sbjct: 168 YQSIVPSDSAVIKIGDITIDIEGNRVYKDRNEIELTGREYHLLSYMAQNVNKIIGKERLY 227 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 QVWG + + + +++ H+R+K+E +P+ P+ IT G+GY+ + Sbjct: 228 EQVWGVYSSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKLV 274 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 5/229 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M ++LI +D I L + + + A + + P +++LD+ +P DG Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R +R S VPVI+++AR E+ +KI LD GADDY+ KPF E+ AR+R LRR + Sbjct: 61 YEVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMT 120 Query: 121 A---TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + ++ +++ ++L +H G ++ LT E + L +N KV T+ LL Sbjct: 121 KKENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLL 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRH-FITETGIGYRFML 225 + +WG + S + ++ LR KL P T G+GY+F + Sbjct: 181 DSLWGFDYFGDSRTVDSHIKRLRAKL-DMLEHPNWSIKTIWGVGYKFEV 228 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +V+++EDE I LR L +GMRV A + L + DL+ILDL LPD DG+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 63 FIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R LR WS +P+I+L+AR E +++ L GADDY+ KPF EL AR+ RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRA-G 136 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + P +++ + ++++L R + + LTP EF LL + + +V T++ LL++VW Sbjct: 137 ISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVW 196 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 G V S+ + +++ +LR+K+ + T G+GY Sbjct: 197 GFTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGY 234 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 136/232 (58%), Gaps = 9/232 (3%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP-DLIILDLGLPDG 58 MT+ +LI++D++A++ LR E + V A T G+ A P D+++LD+ LPD Sbjct: 1 MTHRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDI 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 DG E ++ +R S VPVI+L+AR +++D+I L+ GADDY+ KPF EL AR++ LRR Sbjct: 61 DGFETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRR 120 Query: 119 HSATTAPDPL-------VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVL 171 +A+ P+ + F V +D A RV+ + E+ +T +E +L L+++ G L Sbjct: 121 ATASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPL 180 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 T+ +LL+ G + + +++ +R+KLE DP+ PR+ T G GY + Sbjct: 181 TRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMW 232 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 82/218 (37%), Positives = 131/218 (60%), Gaps = 3/218 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VEDE + R+L+ LE +G GL +A T + DLI+LD+ LP+ GIE Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R +R+ VP+I+++AR E D + LD+GA+DYL+KPF I EL AR+RV LR+ + Sbjct: 73 CRRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESKA 132 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 + + + + AR + EEE+ LTP EF LL ++ N + +++ Q+L VWG Sbjct: 133 NQE--IVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGF 190 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 + + +++ + +Y+ +LR K+E DP+ + T GIGY Sbjct: 191 DFMGNTNIVDVYIRYLRNKIESDPSV-KLIHTVRGIGY 227 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VLIV+DE I +++ LE +G VFEA + L PDLI+LDL LPD G Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E +R+ S VP+I+L+A+ +E I+ L GADDY++KPF EL AR+ RR + Sbjct: 65 EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLNE 124 Query: 122 TTAP-DPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 P + F +D+ +D+ + I + E + LT ++++L LL K T+ +L++ Sbjct: 125 EVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREELIS 184 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + + ++ ++RQK+E +P P++ IT G GYRF Sbjct: 185 TALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRF 229 >UniRef50_B0RVC3 Two-component system response regulator n=129 Tax=Bacteria RepID=B0RVC3_XANCB Length = 271 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 107/224 (47%), Positives = 151/224 (67%), Gaps = 1/224 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VLI++DE IRRFL +L G RV +A T + GL A + +L++LD+GLPD DG Sbjct: 44 ARVLIIDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLATLAGQGAELVVLDIGLPDRDGH 103 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E +R++RQWS+VPVI+L+ R+ E++K+AALDAGA+DY++KPFG+ EL AR+R LR+ A Sbjct: 104 EVLREIRQWSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 163 Query: 122 -TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T + + + + L R + E V L+ E+ LLA+L +AG+V+TQ QLL +V Sbjct: 164 GNTVEESVFDDGRLHIHLGLREVTLDGEAVPLSRKEYALLALLFKHAGRVVTQPQLLREV 223 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WGP E +HYLRI +G LRQKL D A P + +TE G+G RF+ Sbjct: 224 WGPTHEEDTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVGLRFI 267 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 123/221 (55%), Gaps = 10/221 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +LIVEDEQ + RFL L + V Q GL +A + DLIILDL LP +G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E R +RQ + P+I+++A+S+ DK+A LD GADDY+ KPF I EL AR+R LRR Sbjct: 61 LEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQP 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ++ + + + E+ LT E+ LL +L N V+ + Q+LN V Sbjct: 121 ----QKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHV 171 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 WG N+ ++ + +Y+ +LR KL+ R + T G+GY Sbjct: 172 WGYNSEVETNVVDVYIRYLRNKLKP-YDRDKMIETVRGVGY 211 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M NVLIVEDE+ ++ + + G F A+ L+ + DL+ILD+ +P DG Sbjct: 20 MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDG 79 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + R+ S +P+I+L+A+ E DK+ + GADDY++KPF L A+ LRR S Sbjct: 80 FSVCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSS 139 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 AP + + V ++ + +E+ LT E+ LL L+ N G++ + QLLN++ Sbjct: 140 --PAPLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRI 197 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WG + + + ++ LRQKL + +H +T GY+F + Sbjct: 198 WGYDFEGTTRTVDTHIKTLRQKLGDEG---KHIVTLIRSGYKFEV 239 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+ +DE+ I L LE G V + L P LIILDL LPD G E Sbjct: 6 TILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGEE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R SAVP+++L+A+ + D++ L GADDY++KPF E+ AR++ LRR Sbjct: 66 VCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTMLD 125 Query: 123 TAPDPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +++ D+ +D ++V+++G LT E++LL +L + +V ++ +L+ +V Sbjct: 126 HPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREELIERV 185 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +G + + ++ +LR K+E DP P + T G+GYRF Sbjct: 186 FGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRF 228 >UniRef50_B9Y2I0 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B9Y2I0_9FIRM Length = 239 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 98/225 (43%), Positives = 146/225 (64%), Gaps = 2/225 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +LIVED+ IR F+ L +G A T Q + A DL++LDLGLPD DG+ Sbjct: 6 ARILIVEDDPQIRNFISYVLSAEGFASDNAATAQSAMTLLAANVYDLMLLDLGLPDYDGM 65 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR--H 119 + IR +R+WS +P++V+SAR ++ +K ALDAGADDYL+KPF EL AR+RVA+R Sbjct: 66 DVIRKVREWSEIPILVVSARDQDQEKAQALDAGADDYLTKPFSTTELMARIRVAIRHAFR 125 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T A ++ ++++DL R + + +HLTP+E+ LL++ L N+GKVLT R L++ Sbjct: 126 QNTAAVQKVLTVRELSLDLEKRQVTLRGQPLHLTPMEYNLLSLFLRNSGKVLTTRYLISA 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +WG E + LR M LR+K+E++PA+PR+ +TE G+GYR + Sbjct: 186 IWGSGYGEDTQALRALMAGLRRKIEENPAKPRYIVTEIGVGYRLV 230 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +LIV+DE IR + ALE G EAE Q+ RKPDLI+LD LP GI Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 62 EFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 E R L++ +P+I+L+A+ EE +KI L+ GADDY++KPF EL ARL+ LRR Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + P ++ + +D + + + + P E+RLL + + + T+ QLL+ Sbjct: 124 TGPGDSEAP-IEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLD 182 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 QVWG N + +++ LR+ L + T G GYRF Sbjct: 183 QVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRF 225 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+DE I F++ E G V A + + D+I+LD+ +P+ DG + Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNIDGFQ 62 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R + P+I LSAR E DKI L G DDY+ KPF I EL+AR++ LRR Sbjct: 63 VCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKRI 122 Query: 123 TAPD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + + F +T+D+ +R +H EEE+ T EF ++ +L + +V ++ Q+ +VW Sbjct: 123 PLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKVW 182 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G +A ++ + ++ +R K + A H T G+GYR+ + Sbjct: 183 GYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEI 226 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+D+ A+ L +G V AE L +PDL++LD+ +P G E Sbjct: 4 KILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSGFE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL--RRHS 120 ++ +R+ S VPVI+L+A+S+ DK+ L+ GADDY++KPF EL AR++ L Sbjct: 64 VLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLGRR 123 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 D +++ + +D A + R E + LTP EF++LA+LL G+ T+ Q+ V Sbjct: 124 EGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQISEAV 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + S Y+ +++ LR K+E+DP+RP T +GYR Sbjct: 184 STGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 +LIV+DE AI + ++ L +G V A + + L LI+LD+ +P G Sbjct: 4 ATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQTG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + ++R+ + P+ L+A++ + DK++ GADDY++KPF EL AR++ L+R Sbjct: 64 FDVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTY 123 Query: 121 -----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 A + ++ + E V + +LL ++ +VL++ Q Sbjct: 124 IHKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKDQ 183 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + +VWG + S+ + +++ LR+K+E+DP+ P + +T G+GY+F+ Sbjct: 184 IYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFV 232 >UniRef50_D1B309 Response regulator receiver n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B309_SULD5 Length = 233 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 101/225 (44%), Positives = 134/225 (59%), Gaps = 1/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVED+ AI + L +L G + A L + + P LIILDLGLPDGDG Sbjct: 1 MELILIVEDDDAIAKLLTISLHEYGFKTKHAYDLATAKRDILSHNPLLIILDLGLPDGDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 I +R+ S P+IVLSAR++E + IAALD GADDY++KPF EL AR+R LRR Sbjct: 61 KSLITKVRKQSKTPIIVLSARNDEKEIIAALDLGADDYVTKPFSTSELLARVRSTLRRVQ 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ATTA D ++ D+T+D + + + LTP E+ LL L+ NA KVL +Q+L +V Sbjct: 121 ATTARD-MLTCKDLTIDFTKKEVQLKGALLKLTPTEYTLLRYLMQNANKVLPHQQILKEV 179 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WG YLR Y+ LR+K+E RP + TE+ IGYRF Sbjct: 180 WGVGYQNEMQYLRTYINSLRKKIEDSSTRPEYITTESSIGYRFAC 224 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 298 bits (765), Expect = 8e-80, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +LIV+DE +R +R L G + EA + L E LIILD+ +P+ DG Sbjct: 3 TKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGW 62 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E ++R+ + A+P+++L+AR+E +DK+ LD GADDYL+KPF EL AR+ LRR Sbjct: 63 EVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAV 122 Query: 121 -ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T + F ++ +D+ + + VHLTP EF LL +LL N +V + QLL + Sbjct: 123 VNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLK 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +WG + + + ++ +R KL+++ T G+GY+ Sbjct: 183 IWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DE+AI + AL +G V + Q L A PDL++LD+ L D DG Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 LR VP + L+AR DK+ L G DDY++KPF + EL AR+R LRR + Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 122 TTAPD---PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 D ++F+D+ +D R + R V LT E+RLL LL NA VLT+ QLL+ Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWG + L Y+ +LR+K+ D P T G+GY L Sbjct: 260 HVWGHDFSGEGGVLETYISYLRRKV--DNVEPPLIHTVRGVGYVLRL 304 >UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacillales RepID=C3ALG3_BACMY Length = 238 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+DE I LR LE +G + EA + L K DL I+D+ +P+ +G E Sbjct: 4 TILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGYE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 I+ +R+ +P+I+LSA+++E DKI L GADD++SKPF + E+ AR++ LRR Sbjct: 64 LIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYDF 123 Query: 123 -----TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 D+ +D + ++ + E+ L+ +E++LL + + G++ T++Q+ Sbjct: 124 NTDLLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQIF 183 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VW + + + + + LR+K+E P P + T G+GYRF Sbjct: 184 ENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRF 229 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 9/232 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+D+ +IR + ++ +G V +A+ L + DL+ILD+ + +G Sbjct: 3 KTILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYNGF 62 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E +R ++P+I+LSA+ + DK GADDY++KPF EL R LR S Sbjct: 63 EVCSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRNRS 122 Query: 121 ATTAP--------DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 A ++ D+++D+ R + G + LT E+ +L ++ V T Sbjct: 123 PQEAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVFT 182 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++Q+L+ VWG V S + +++ LR+K+E DP+RP H ITE G+GYR + Sbjct: 183 RQQILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRIV 234 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +VLI+ED+ I ++ +E G A + GL PD I LD+ LP DG E Sbjct: 7 SVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWE 66 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +++R +P+I+L+ + E DKI LD GADDY+ KPF EL AR++ +RR Sbjct: 67 LCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADL 126 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 D +V + VD G++E+ + P E LL L + +V T++QLL+Q+W Sbjct: 127 LNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIW 186 Query: 182 GPNAVEHSHYLRIYMGHLRQKL-EQDPARPRHFITETGIGYRFM 224 G + +++ +R+KL E D T G+GY+F+ Sbjct: 187 GYAFEGDPRTIDVHIKRIREKLTEADAK--WTIKTIRGVGYKFL 228 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 8/230 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M + ++ED++ I L + +G V + KPD+++LDL +P+ DG Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60 Query: 61 IEFIRDLRQWSA---VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 +EF + +R +P+I+L+A+S E DKI L+ GADDY++KPF EL AR++ LR Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 118 RHSA--TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 R + P KF D+ + + + VHLT +F+LL L+N+ GKVL++ Sbjct: 121 RSKSLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDY 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 ++ VW + + + +++ LR+ L++ T G+GY++ Sbjct: 181 IIEHVWAWDKDVYDRTIDVHIKKLRELLKEYGN---CIKTIRGVGYKWEC 227 >UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostridiales RepID=C9XR57_CLODC Length = 244 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 130/225 (57%), Gaps = 4/225 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK-PDLIILDLGLPDGDGI 61 +LI+EDE IR F+ L+ +G + EA T + + + T + +LD+ LPD GI Sbjct: 16 KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 75 Query: 62 EFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + +R+ + V +I+L+A+++E DKI +GADDY+ KPF I EL R+ LRR + Sbjct: 76 EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 135 Query: 121 A--TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 ++ + +D+ R + + +E+ LTP EF ++ L++NA + L++ Q+L+ Sbjct: 136 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 195 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG N + + + + +R K+E DP++P++ T G GY F Sbjct: 196 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCF 240 >UniRef50_C6CSH8 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSH8_PAESJ Length = 240 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 130/231 (56%), Gaps = 8/231 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M VL++ED+ +R L L +G V +A T + GL PD+++LDL LPD DG Sbjct: 1 MYKVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + +R+ S VP+++LS +SE S+++ AL AGADDY+ KPF + E+ AR+ +RR Sbjct: 61 MGVCASIRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQ 120 Query: 121 --------ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 A+ + + + +D R++ + + T EF ++ + L++ GKV + Sbjct: 121 FSATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFS 180 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +L+N + G ++ + +++ +LR+K+EQ+P PR T G GY++ Sbjct: 181 REELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYKY 231 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+D+ I ++TA E + V A + + PDLI+LD+ LPD G++ Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 63 FIRDL-RQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 I+ L R++ +PVI L+AR + D I L+ GADDY++KPF L AR++ RR+ Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 +VK D+ +D+ + + + ++ L EF LL +++ N GKV ++++L++VW Sbjct: 122 GPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRVW 181 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + + +++ LR+K+ T G+GY+ ++ Sbjct: 182 GMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKLVI 220 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+V+DE I +R AL G V A T Q L AA +PDL+ILD+ LPD DG Sbjct: 21 PRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGF 80 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R LR V V+ L+AR DKI L G DDY++KPF + EL AR+R LRR Sbjct: 81 EVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTR 140 Query: 121 ATTAPDP----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 L+ ++DV +D A ++ R ++ V L+P EF LL L+N +VL++ Q+ Sbjct: 141 RPAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQI 200 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 L VW + + Y+ +LR+KL Q P T+ G GY Sbjct: 201 LAAVWDRDFDGEPTVVDQYVSYLRRKLGQHG--PPLIHTQRGFGY 243 >UniRef50_P54443 Uncharacterized transcriptional regulatory protein yrkP n=4 Tax=Bacillus RepID=YRKP_BACSU Length = 231 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VED++ I L +L G V A+ +R L DL+ILD+ +P GIE Sbjct: 4 RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLV-NDSLDLVILDIMMPGISGIE 62 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 + +R+ S VP++ L+ARS DK L AG DDY++KPF EL AR+ LRR+ Sbjct: 63 TCQHIRKSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTIY 122 Query: 120 -SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + + + V + + E+++ L+ +E+R+L +L+N K+ + + + Sbjct: 123 QEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNIYE 182 Query: 179 QVWG-PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG P ++ + +++ LR K+E DPARP + TE G GYRF Sbjct: 183 SVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 11/230 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+VED + L L G +V+ A + L +PDL+ILD LP DG+ Sbjct: 6 PTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGL 65 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E +R +RQ + PV++L+ARSEE+D + L+ GADDYL+KPFG+ EL AR+R LRR Sbjct: 66 EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQR 125 Query: 122 TTA--------PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 ++++ D+ +D ++ ++E+ LTP EF +L +LL N G+ ++ Sbjct: 126 IQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSR 185 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+ +WG + V + M LR+KL T G+GYR Sbjct: 186 NYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRL 232 >UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AEE3 Length = 238 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+++DE+ I + L +G V + L + K DL+ILD+ +P DGI Sbjct: 11 PRILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDLEKFKIDLVILDMMMPGVDGI 70 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + + +R+ +PVI +SA++ + DKI L GADDY++KPF EL AR++ LRR+ Sbjct: 71 QALEMIREKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRRYQV 130 Query: 122 TTAP----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + P + +++ +D+ +D +++ V +T IE+ +L +L ++ G V + + Sbjct: 131 YSKPIGVDNSIIQANDLLIDTNKKMVSVDNRPVAVTKIEYEILVLLASHPGTVFSTEDIY 190 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 ++W A ++ + +++ LR+K+E+ P PRH IT GIGY+F L Sbjct: 191 TKIWHEEATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGYKFEL 238 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 10/232 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGD 59 VL++ED+ + + L + V A T GL + DL+ILDL LPD D Sbjct: 9 KTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMD 68 Query: 60 GIEFIRDLRQWSA-----VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRV 114 G++ + +RQ +I+L+A+ + +D++ L+ GADDY+SKPF EL AR+R Sbjct: 69 GMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRA 128 Query: 115 ALRRHSAT--TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 +RRH + + F + V + + +E V LT +F+LL ++GKVL+ Sbjct: 129 VMRRHDLPLHQQKEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSGKVLS 188 Query: 173 QRQLLNQVWGPNAVEH-SHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + QL + + ++ ++ + +++ LR +E +P +P+ IT G+GY+F Sbjct: 189 REQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 240 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 9/231 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L++ED+ I +R +L+ + + GL PD++ILDL LPD DG Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 IE R +R+ P+ +++AR+EE D+I L+ GADDY++KPF + EL+ R+ V RR Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 120 SATT-------APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 A +++ + +D R + + V+++ EF +L ++ + GKV + Sbjct: 121 DKKAGIKPNVGASGEIIR-GALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFS 179 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +L VWG + ++ +R KLE++ A+P T GIGYRF Sbjct: 180 REMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRF 230 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 6/228 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+D+ +R L L G +V ++ L++LDL LP DG+ Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 63 FIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 R LR S +P+I+++A+ EE D+I L+ GADDY+ KPF EL AR+R LRR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 ---SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 A + + ++ F ++L R + R +E + LT EF +L L+++ + L++ +L Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +N G + + + LR+ +E+DPA PR+ T G+GY F+ Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLIV+D+ +R L LEG G V + + + E T P ++ILD+ +P DG+E Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +RDLR S VPVI+L+A+ E++D+I L+ GADDY+SKPF EL AR++ LRR Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGPE 126 Query: 124 APDP---LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +P + + V + +A + + + + L+ EF+LL L++N G+ +T+ L+ V Sbjct: 127 NNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMTSV 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG + + +++ LR + P T G GY F+ Sbjct: 187 WGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFV 230 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VEDE LR L +G V + +A D I+LDL LP DG E Sbjct: 31 RVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGFE 90 Query: 63 FIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R LR+ PV++L+AR + D+I LDAGADDYL KPF GEL ARLR +RR Sbjct: 91 VCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR--G 148 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 +++ D+ +D A + R + L+ EF LL +L+ + +VLT+ +++ VW Sbjct: 149 AVERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVW 208 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 S+ + Y+ ++R+K+ P P T G+GYR Sbjct: 209 DFAFDGTSNIVDQYVRYVRRKI-DIPDGPSLIETVRGVGYRL 249 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 8/229 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLIVED++ I LE G DLI+LDL LP G + Sbjct: 6 RVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSGYD 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA- 121 R++R+ +P+++++AR+E DKI L GADDY++KPF EL AR+ LR++ Sbjct: 66 ICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYDRM 125 Query: 122 -------TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 T + +D+ + + + +++GE E+ EF LL L N V ++ Sbjct: 126 MRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVFSRE 185 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 QL ++WG + V S + +++ +R+K+E D P+ T G GYRF Sbjct: 186 QLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRF 234 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 2/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +LIVEDE I RF++ LE +G V + + GL +A DLIILD+ LP +G+ Sbjct: 4 KKILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGM 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS- 120 E +R LRQ S +PVI+L+A+ E DK+ LD GA+DY++KPF I EL AR+RV + S Sbjct: 64 EVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + ++ + +D+ ++ + LT EF LL L+ N L++ +L +V Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + ++ + +Y+ +LR K+ D ++ T G+GY+F Sbjct: 184 WGYDYLGDTNIVDVYIRYLRSKI-DDKFNKKYIYTIRGLGYQF 225 >UniRef50_C9XSY6 Two-component response regulator n=15 Tax=Firmicutes RepID=C9XSY6_CLODC Length = 241 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 135/226 (59%), Gaps = 2/226 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVED+ I ++ ALE +G + ++ L G ++ + +I+LD+ LPDG G Sbjct: 8 MLKLLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTLPDGTG 67 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + +R +S VP+I L+A EE + + LD G DDY++KPF I EL +R++ LRR Sbjct: 68 YELCKYIRGFSQVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKG 127 Query: 121 ATTAPD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T+ + ++KF D+++ +++ ++E+ LT +E++LL +L+ N VL++ Q+L + Sbjct: 128 NTSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEK 187 Query: 180 VWGPNAV-EHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +W + + L +Y+ LR+K+ D P + T GIGY+++ Sbjct: 188 LWDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYKWI 233 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 6/224 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++++EDE I L L+ G F A ++GL + +PDL++LDL LP G + Sbjct: 4 KIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGTD 63 Query: 63 FIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 + ++ + + +P+I+L+AR +E D+I + GADDY+ KPF EL R++ LRR+ Sbjct: 64 VCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRRN 123 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + D A + + HLTP EF L + N GKVL++ QLL+ Sbjct: 124 VNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQLLSN 183 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG +S + ++ LR+KL T GIGYR Sbjct: 184 AWGYEFEGYSRTVDTHVRRLRKKLGP---YADWLETVRGIGYRM 224 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+ +DE+ IR LR LE G V EA ++ L T+ D+ +LD+ +P+ DG + Sbjct: 4 TILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDGYQ 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 ++ LR+ S VPVIV+SA+ ++ +KI L+ GADDY+ KPF E AR+ +RR Sbjct: 64 VLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKGM 123 Query: 123 TA-----PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 A P +++ ++ +D A + E V LT +E+R++A+ + + G+V T++Q+ Sbjct: 124 AAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQQIY 183 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 W + V + + + M LR KL D T G+GYR Sbjct: 184 ECGWDEDYVAAENSVMVCMSRLRSKLGDDGQEA--IKTIRGLGYRL 227 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M N+L+V+DEQ + +R LE G +V A+ L A +R PDLI+LDL +P DG Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 61 IEFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 R L++ +P+I+LSARS+E DK+ L+ GADDY++KPF EL AR+ LR Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 118 RHSATT-----APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 R ++ + +D I G ++ +L EF LL L GK + Sbjct: 121 RDKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFS 180 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + LL Q W + S + +++ +RQKLE A ++ T G+GYRF+ Sbjct: 181 RYFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFI 232 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK-PDLIILDLGLPDGDG 60 +L+VEDE + + L+ +G R A + L E A PD I+LDL LPD G Sbjct: 11 KTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISG 70 Query: 61 IEFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 E + LR+ VPVI+++A+ E D++ + GADDY+ KPF + EL R+R LR Sbjct: 71 TEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLR 130 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R ++ F + VD + E+E+ LT +EFRLL ++ G+V T+ LL Sbjct: 131 RTERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDALL 190 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VWG A + + ++ LR+KL R+ T G+GYRF Sbjct: 191 SDVWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRF 233 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIVEDE+ IR L+ E + V A + + + + +P LI+LD+ LP G E Sbjct: 5 RILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKSGFE 64 Query: 63 FIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R +R+ +I+L+A++EE+ K+A LD GADDY++KPF I EL AR++ LRR Sbjct: 65 VCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRRIDL 124 Query: 122 TTAPDPL--------VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 T +P + F+D+ +D + +G + L+ EF++L G+V+ + Sbjct: 125 QTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEVVLR 184 Query: 174 RQLLNQVWGP--NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL +WG + + + ++ +LR+KLE D A P+ ++ G GY+F Sbjct: 185 EDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKF 236 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 10/231 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVEDE+ ++R L L +G A+ + + ++ + DL ++D+ +P DG Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +F++ LR+ S +PVI L+ARS+E D+I L G DDYLSKPF GEL AR++ LRR Sbjct: 61 FDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 121 ATTA-------PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 ++ + ++ AR + + + LT EF LL L + G+V T+ Sbjct: 121 QRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTR 180 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 LL VWG + + ++ LR KL+ T GIGY+ + Sbjct: 181 EHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYGN---VIQTVWGIGYKLV 228 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 116/228 (50%), Gaps = 5/228 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+++DE +I R + + G AE GL+ A PDL+I+D+ +P DG Sbjct: 1 MKKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 R +R+ PVI LSA+ + DK AG DDY+ KPF EL + LRR Sbjct: 61 FTTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRA 120 Query: 120 SATTAP----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 S AP ++ +D + + E + LTP EF++ L ++ G VL++ Q Sbjct: 121 SMAAAPVAPRGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQ 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L+ WG V + + +++ LR+K+E DP+ PR T GIGYRF Sbjct: 181 LVEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRF 228 >UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNC3_CLOBO Length = 231 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 127/221 (57%), Gaps = 2/221 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL++EDE +I +F++ L+ V +A + + G+ + T P ++ILD+ LP DG + Sbjct: 6 KVLVIEDELSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGIDGFK 65 Query: 63 FIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS- 120 LR+ V +I+L+A ++ DKI L+ GADDY+ KPF EL AR+ +RR S Sbjct: 66 VCEILRKNHPKVGIIMLTALGQDVDKIKGLEYGADDYMIKPFNPLELAARVTSLIRRMSF 125 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + ++ VDL +++ ++ EE+++LTP EF LL + + N G L++ +LL+ Sbjct: 126 SNDNSSRILISEPFKVDLNSKIAYKNEEKLNLTPKEFLLLKIFIENIGISLSRDKLLDLA 185 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 WG N V + + + LR KLE DP+ P++ T G GY Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGTGY 226 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 10/234 (4%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 MT +L++EDE + R L L +G V + Q G A + DLI+LDL LP + Sbjct: 1 MTQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMN 60 Query: 60 GIEFIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 G E + LR + PVI+L+A++ E + + L +GADDY++KPFG+ EL AR+ LRR Sbjct: 61 GFEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRR 120 Query: 119 HSATTAPD-------PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVL 171 + + + +T+ + E + L P EF +L L G V+ Sbjct: 121 STGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVM 180 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 T+ L+N VWG + + + +++ LR+KLE DP H + G+GY+ ++ Sbjct: 181 TRDDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQS-VHIDSIRGVGYKLVV 233 >UniRef50_D0LLH3 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLH3_HALO1 Length = 226 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 94/222 (42%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIVED++AI L L+ G + L P LI+LD+ LP +GI Sbjct: 5 KILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSENGIG 64 Query: 63 FIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LRQ + VPVI+LSAR +E DK+AAL GADDY++KPFG+ EL AR+ LRR Sbjct: 65 VLGTLRQSGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLRRV-G 123 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T L +F V V+L R + R E + LT +EF LLA L+ N +V ++ +LL QVW Sbjct: 124 TQEISALHRFGSVEVELETRSVVRQGEAIKLTHLEFELLAFLVKNPSRVFSREELLRQVW 183 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++ + ++ LR KLE DP PR FIT G GYRF Sbjct: 184 KQSS-GTLRTVDNFVAQLRSKLESDPENPRFFITVRGSGYRF 224 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 80/219 (36%), Positives = 127/219 (57%), Gaps = 4/219 (1%) Query: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 LIVED++ + L +G V A+ + L +A T D+IILD+ +P DG++ Sbjct: 6 LIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVKVC 65 Query: 65 RDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTA 124 + LR S +P+I+L+A+S+ DK+ L+AGADDY++KPF EL R++ LRR++ Sbjct: 66 KQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKVQE 125 Query: 125 PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPN 184 ++K D+T+DL + + ++LTP EF LL VL N K + + LLN+VWG Sbjct: 126 EKIVLK--DLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIA 183 Query: 185 AVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + S+ + +Y+ ++R KLE P P+ +T G GY Sbjct: 184 SDYDSNIVDVYIKNIRNKLEDKP--PKLILTIRGRGYML 220 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 3/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VEDE + L+ L+ V A + G A T DL ILD+ LP G++ Sbjct: 2 RILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGLD 61 Query: 63 FIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R +R+ PV++L+A+ D++ LDAGADDYL KPF EL AR+R RR + Sbjct: 62 ILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRR-TG 120 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 A ++ +DL R + R E + LT EF+LL + + N KVL++ +L++VW Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 GP+A + + Y+ LR+K+ +P P + T G+GY F Sbjct: 181 GPDADVIGNAVENYVHFLRKKI-DEPDLPSYITTVRGVGYMF 221 >UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA Length = 230 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 + I +D++AIR L L+ +G + A+ Q L A+T DL+ILDL +P GIE Sbjct: 7 ICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLMMPVMGGIEA 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 ++R+ +P+++L+A++ + D + + GADDY+ KPF E+ R++ LRR+ Sbjct: 67 CIEIRKTQFMPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLLRRYRDYG 126 Query: 124 AP----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + F +VT+DL R + E + LTP EF +LA + + +VLT Q+ Sbjct: 127 SDRADLTSTLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVLTVEQIYEA 186 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG A E + + +++ +R+KLE P +P T G+GYR Sbjct: 187 VWGEAAFEVDNTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230 >UniRef50_UPI0001C31E43 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31E43 Length = 251 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 129/225 (57%), Gaps = 4/225 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGL-PDGDGI 61 +L+V+DE +R L + +G RV + + A++ D+++LD+ L +G Sbjct: 24 TILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVALGSGPNGY 83 Query: 62 EFIRDLRQWSAV-PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R LR V P+I+L+A E+D + L+AGADDY++KPFG+ EL++R+R LRR Sbjct: 84 EVCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLRRAG 143 Query: 121 ATT--APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A D LV+ + +D A R + E VH+T EF LL L+ + G++ +++LL Sbjct: 144 PRPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRLRNRQELLR 203 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +WG +A + +++ HLR+KLE +P PRH +T G GYR Sbjct: 204 AIWGDSAYRDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRL 248 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VED++ IR + L + V A + D+I+LDL LP G E Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR----H 119 ++ +R S VPVI+ +A+ ++DK+ L+ GADDY++KPF I EL AR++ +RR Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 S+ + D ++++ D+ ++++ V+ + ++LT EF ++ +L N G+ ++ QL N Sbjct: 123 SSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLYNA 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +W + + L ++ LR KL + + T GIGY+ Sbjct: 183 IWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKM 226 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 3/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DE +R LR L +G V EA L AA D+I+LDL LPD DG + Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ V +++L+ARSE DK+ L GADDYL+KPF EL AR+ +RR + T Sbjct: 75 VCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 123 TA---PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + ++F + + R + + V T EF L L + + ++ +L+N Sbjct: 135 QSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNL 194 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +WG + ++ ++R+K ++ T G+GY+F Sbjct: 195 IWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKF 238 >UniRef50_C1SI97 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI97_9BACT Length = 236 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+D+ I LR L+ +G V A GL A PD+I+LDL LPD +G + Sbjct: 8 KILVVDDDPDILEVLRLLLDLEGYNVITASNGITGLALARENTPDMIVLDLNLPDINGQQ 67 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R +P+++LSAR SDK+ L+ GADDY++KPF EL AR++ LRR Sbjct: 68 ICKIIRSELDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSEKN 127 Query: 123 TAPDP-----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 ++ F +T+D A+R + +E+V LTP E+ +L + G VL++ ++ Sbjct: 128 NTSQEAGTGDVLIFHHMTIDKASRQVFIKDEKVALTPKEYEILLYFVGKTGHVLSRDDIV 187 Query: 178 NQVWGPNA-VEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 N +WG N+ S L +++ +LRQK+E +P P T +G+GY+ Sbjct: 188 NDIWGKNSIYSWSRSLDVHIKNLRQKIEINPKNPDIVKTVSGVGYK 233 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +LIVEDEQ + RF+ LE + V + GL +A + DLI+LDL LP+ +G Sbjct: 1 MTKILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNING 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E R +RQ P+I+++A+S+ DK+A LD GADDY+ KPF I EL AR+R LRR Sbjct: 61 LEICRQIRQNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRRQP 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 D D A + + + LT E+ LL +L+ N VL + Q++ V Sbjct: 121 QKNLIDIKGIIID----KDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDV 176 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 WG + ++ + +Y+ +LR KL+ + + T G+GY Sbjct: 177 WGYDTEVETNVVDVYIRYLRNKLKP-FGKDKCIETVRGVGY 216 >UniRef50_A9AXY0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXY0_HERA2 Length = 225 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 113/208 (54%), Gaps = 1/208 (0%) Query: 17 LRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVI 76 ++ LE G + A GL +P L++LDL LP DG+ + +RQ S P+I Sbjct: 18 MQLYLEQAGFTTYLASDGLAGLALVQQHQPSLVVLDLMLPKLDGLAVFKTIRQTSNTPII 77 Query: 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTV 136 +++ARS + ++I L+ GADDY+ KPF EL AR+R LRR A ++K + + Sbjct: 78 MVTARSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRRSQPIQA-SQMLKRGPIEL 136 Query: 137 DLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYM 196 DL ++ V L+ I+ LLA + + ++L++ QLL V+ + L ++ Sbjct: 137 DLEQHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFAGDYAGFDRSLDAHI 196 Query: 197 GHLRQKLEQDPARPRHFITETGIGYRFM 224 LRQ++E D P++ +T G+GY+F+ Sbjct: 197 ARLRQRIEHDRTNPQYIVTVYGLGYKFV 224 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 354 2e-96 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 352 7e-96 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 351 9e-96 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 350 2e-95 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 347 1e-94 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 346 4e-94 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 345 7e-94 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 344 1e-93 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 343 3e-93 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 342 7e-93 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 342 7e-93 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 341 9e-93 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 341 1e-92 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 340 2e-92 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 340 2e-92 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 340 2e-92 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 340 2e-92 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 340 2e-92 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 339 4e-92 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 339 5e-92 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 338 8e-92 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 338 8e-92 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 337 1e-91 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_B8G223 Two component transcriptional regulator, winged ... 335 9e-91 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 333 2e-90 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 333 2e-90 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 333 3e-90 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 333 3e-90 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 332 4e-90 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 332 5e-90 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 332 8e-90 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 332 8e-90 UniRef50_C4L340 Two component transcriptional regulator, winged ... 331 8e-90 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 331 1e-89 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 330 1e-89 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 330 2e-89 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 330 2e-89 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 330 3e-89 UniRef50_B8G179 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 328 9e-89 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 328 1e-88 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 327 1e-88 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 327 1e-88 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 327 1e-88 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 326 3e-88 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 326 3e-88 UniRef50_D1C683 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 325 5e-88 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 325 5e-88 UniRef50_B8I014 Two component transcriptional regulator, winged ... 325 5e-88 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 325 6e-88 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 325 6e-88 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 325 9e-88 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 325 9e-88 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 325 1e-87 UniRef50_B8I272 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 324 1e-87 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 324 1e-87 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 324 1e-87 UniRef50_A4AL32 Putative two-component system response regulator... 324 2e-87 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 323 2e-87 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 323 2e-87 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 323 2e-87 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 323 3e-87 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 323 4e-87 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 323 4e-87 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 322 5e-87 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 322 7e-87 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 322 7e-87 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 322 8e-87 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 322 8e-87 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 321 1e-86 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 321 1e-86 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 321 1e-86 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_C4L703 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 320 2e-86 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 320 2e-86 UniRef50_A4J267 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 320 3e-86 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 320 3e-86 UniRef50_A9AXT6 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 319 4e-86 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 319 5e-86 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 319 5e-86 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 319 5e-86 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 318 6e-86 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 318 8e-86 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 318 8e-86 UniRef50_D1C280 Two component transcriptional regulator, winged ... 318 9e-86 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 318 9e-86 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 317 1e-85 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 317 2e-85 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 317 2e-85 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 317 2e-85 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 317 2e-85 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 317 2e-85 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 317 3e-85 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 316 3e-85 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 316 4e-85 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 316 5e-85 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 315 6e-85 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 315 7e-85 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 315 7e-85 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 315 7e-85 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 315 9e-85 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 315 9e-85 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 315 1e-84 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 314 2e-84 UniRef50_A0LU58 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 313 2e-84 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 313 2e-84 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 313 2e-84 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 313 2e-84 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 313 2e-84 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 312 5e-84 UniRef50_C7RUD8 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 312 6e-84 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 312 8e-84 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 312 9e-84 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 312 9e-84 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 311 1e-83 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 311 1e-83 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 311 1e-83 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 311 1e-83 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 311 1e-83 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 310 2e-83 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 310 2e-83 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 310 2e-83 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 310 2e-83 UniRef50_A6LQJ3 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 310 3e-83 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 310 3e-83 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 309 4e-83 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_C0WE14 Two-component system transcriptional regulator n... 308 6e-83 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 308 6e-83 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 308 7e-83 UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synecho... 308 8e-83 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 308 1e-82 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 308 1e-82 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 307 2e-82 UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=... 307 2e-82 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 307 2e-82 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 307 2e-82 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 307 2e-82 UniRef50_P21866 KDP operon transcriptional regulatory protein kd... 307 2e-82 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 307 3e-82 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 307 3e-82 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 307 3e-82 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 307 3e-82 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_B8G869 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_D1BL25 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteob... 306 5e-82 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 305 5e-82 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 305 6e-82 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 305 6e-82 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 305 7e-82 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 305 9e-82 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 305 9e-82 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 305 1e-81 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 304 1e-81 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 304 1e-81 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 304 1e-81 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_C6PZ92 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 304 2e-81 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 303 2e-81 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 303 2e-81 UniRef50_Q1IUD6 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 303 3e-81 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 303 3e-81 UniRef50_C6Q063 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 303 3e-81 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 302 4e-81 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 302 4e-81 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 302 5e-81 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 302 6e-81 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 302 7e-81 UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob... 302 8e-81 UniRef50_Q2W608 Response regulator consisting of a CheY-like rec... 302 8e-81 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 302 8e-81 UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax... 301 9e-81 UniRef50_D2R313 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 301 1e-80 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 301 1e-80 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 301 2e-80 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 301 2e-80 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 301 2e-80 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1... 300 2e-80 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 300 2e-80 UniRef50_C9XRU4 Two-component system response regulator n=12 Tax... 300 2e-80 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 300 2e-80 UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostr... 300 2e-80 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 300 2e-80 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 300 2e-80 UniRef50_D2LY16 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C4L1R5 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_B8GBC5 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q188S4 Putative lantibiotic resistance two-component re... 300 2e-80 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 300 3e-80 Sequences not found previously or not previously below threshold: >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 354 bits (909), Expect = 2e-96, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 132/229 (57%), Gaps = 5/229 (2%) Query: 1 MT--NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M +L+VED+ +R L L +G + AE + L KP L+ILD+ LP Sbjct: 27 MPEHKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGI 86 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 DG E R +R S+VP+++L+ARS ESDK+ L+AGADDYLSKPFG+ EL AR++ LRR Sbjct: 87 DGFELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146 Query: 119 HSATTAPDPL---VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + +K D+ + + ++ R + +P EF L + ++ N +V ++ Q Sbjct: 147 SQTQNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQ 206 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 LL +VWG + + + +++ LRQK+E DP+ PRH IT G GY+F Sbjct: 207 LLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 352 bits (904), Expect = 7e-96, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 132/231 (57%), Gaps = 7/231 (3%) Query: 1 MT--NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M VLI +DE+ IR L+ LE + V A + L +L+ILDL +P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 DGIE R LR + +P+++L+A+ +E DKI L GADDY++KPF + E+ AR++ +RR Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 119 -----HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 +A T ++ F +T+D++ ++ G++E+ LT E LL +N +V T+ Sbjct: 121 FLVLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTK 180 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 QL VW N +E + + +++ LR+K+E DP+ P+ T GIGY+F+ Sbjct: 181 TQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFV 231 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 351 bits (903), Expect = 9e-96, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 130/223 (58%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VED++ I L L +G V A L + PDL++LD+ LP+ DG Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E +++R+ S VP+I+L+A+ EE DK+ L GADDY++KPFG EL AR+ LRR+ Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + + + +DL R + +EV+L+ EF +L +LL++ G+V T+ ++ + Sbjct: 121 SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHI 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG N + +Y+ LR+K+E DP+ P++ IT +GY+F Sbjct: 181 WGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 350 bits (900), Expect = 2e-95, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 130/226 (57%), Gaps = 2/226 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M ++L+V+DE + + LR +LE +G +V A + L + DLI+LDL LP DG Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + R++R P+I+L+A++++ DKI L+ GADDY++KPF EL AR+R LRR Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 121 ATTAPDP--LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A + D + D+ + R + LT E+ LL +L + G V T+++LL+ Sbjct: 121 AASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLD 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VWG + + +++ +R+KLE+DP+RPR+ T+ G+GY Sbjct: 181 LVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLE 226 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 347 bits (893), Expect = 1e-94, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 139/229 (60%), Gaps = 4/229 (1%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M VL+V+DE+ I + L+ +L D V A + L K D+I+LD+ LP D Sbjct: 10 MAGRVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLD 69 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G+ + +R++S VP+I+L+A+ ++ DKI LD GADDY++KPF I E++AR++ LRR+ Sbjct: 70 GLSVCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRN 129 Query: 120 S---ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 S ++K D+ +D +R ++ ++E++LT EF LL +L N GKV ++ L Sbjct: 130 SSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNL 189 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 L VWG + + + ++M LR+K+E +P+ P++ T+ G+GY F + Sbjct: 190 LKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 346 bits (889), Expect = 4e-94, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 128/226 (56%), Gaps = 2/226 (0%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M +L V+D+ I + L+ +L +G V A + + L +A PDL+ILDL +P D Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G E + L+ VP+I+LSAR+EE D++ G DDY +KPF EL R++ LRR Sbjct: 61 GFETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRL 120 Query: 120 SATTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + ++K+ ++T+D R + +V LTP +F LL ++ +N +V T+ LL+ Sbjct: 121 GEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLD 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++W + + + +++ LR+K+E DP+ P + T G+GY+F Sbjct: 181 KIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 345 bits (887), Expect = 7e-94, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 136/226 (60%), Gaps = 5/226 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +++V+DE+ IR + LE +G RV +AE + L K DLIILD+ +P+ DGI Sbjct: 4 NTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGI 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E +R+ +P+I+LSA++E+ DKI L AGADDY++KPF EL AR++ LRR+ Sbjct: 64 EACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKK 123 Query: 122 TTAP-----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 D +++ ++T++ A + GE++V LTP EF +L +L N G V + ++ Sbjct: 124 FNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKI 183 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +VW + + + +++ LR+K+E++P +P++ T G+GY+ Sbjct: 184 YERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 344 bits (884), Expect = 1e-93, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 1/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VEDE+AIR + LE + V Q L E + DL+ILDL LP G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R S VP+I+L+A+ E D+I L+ GADDYL KPF EL AR+R LRR A Sbjct: 70 VCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHAD 129 Query: 123 TAPD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + P +++F ++T+D++ + G +EV LT EF+LL L G+V ++ +L+ +V Sbjct: 130 SEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKVL 189 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 G + + + ++ +LR K+ +P P+ T G+GYRF Sbjct: 190 GYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 343 bits (881), Expect = 3e-93, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DE +R L + L+ + + A Q L L++LD+ +P+ DG+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R++S VP+I+L+ARS+E D+I L GADDY++KPF EL AR+ LRR Sbjct: 67 ACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRF 126 Query: 123 T-APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T + + +D +R +H + + LT EF LL + + N KV ++ QLL+Q+W Sbjct: 127 TVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQIW 186 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 G + + + + ++ LR KL + T GIGY+F Sbjct: 187 GADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFE 226 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 342 bits (878), Expect = 7e-93, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 129/228 (56%), Gaps = 6/228 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L++ED Q I + LE V GL T+ DLIILD+ LP DG+ Sbjct: 3 KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGL 62 Query: 62 EFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 + + LR + P+++L+A+ ESD++ L+ GADDYL+KPF + ELQAR++ LRR Sbjct: 63 QVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122 Query: 120 ----SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 +T D + F ++ +D R + G++E+ LT EF LL + ++ G+V ++ + Sbjct: 123 MSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREK 182 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+ VWG + H + ++ LR KLE D + P++ +T G+GY+F Sbjct: 183 LLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 342 bits (878), Expect = 7e-93, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 6/227 (2%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M V++V+DE+ I L L+ +G V+ A + +PD+++LD+ LP D Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G+E R++R+ +P+I+L+A+ E DK+ L+ GADDY++KPF EL AR++ LRRH Sbjct: 61 GMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRH 120 Query: 120 SATTAPD-----PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + A D + D+ + A I + E++ LT EF L L + G+V+T+ Sbjct: 121 YSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTRE 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 LL VWG + + + + LR+K+E DP+ P + +T G+GY Sbjct: 181 HLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 341 bits (877), Expect = 9e-93, Method: Composition-based stats. Identities = 92/225 (40%), Positives = 137/225 (60%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M+ +L+V+DE A+R LR LE +G V EA +R L A KPDL++LDL +P+ G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 EF+R + S PVIVL+A+ E++DKI L+ GADDY++KPF + EL AR+R LRR Sbjct: 61 YEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T +++ +D+ +D R + G V LTP EF +LA L+ G+V ++ LL++V Sbjct: 121 QTPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRV 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + +++ +LR K+E DP P++ T G+GYRF L Sbjct: 181 SGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFAL 225 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 125/229 (54%), Gaps = 5/229 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVEDE+ IR + LE + V+ A G T +PDLIILDL +P DG Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 E ++RQ S VP+I+L+A+ EE D+I L GADDYL+KPF EL R+++ LRR Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 119 ---HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 A + +++F D+ + R + E EV LT EF +L V+ + +V ++ Q Sbjct: 121 QVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQ 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 LL +W S+ + + + LR+KLE+ + T GIGYRF Sbjct: 181 LLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFE 229 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 340 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 12/230 (5%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+V+DE IR L L+ G V A + L A DL++LD+ LP+ DG+E Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLEV 60 Query: 64 IRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 R L+ Q S +P+I+L+A++EE D++ L+ GADDY+ KPF + EL AR++ LRR Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSA 120 Query: 120 ------SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 + + + +D ++ ++ + LTP E+ LL +L+ N G+ ++ Sbjct: 121 SVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSR 180 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +LL ++WG + + +++ HLR KL+ DP T G+GYRF Sbjct: 181 DELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 340 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+D++ I + L LE +G V A + +A PD+++LD+ LP DG Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---H 119 +++R+ S VP+I+L+AR +E+D+I L+ GADDY+ KPF E+ AR+R RR Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 S + ++K D +D +R + V LTP E++LL + L + G+V ++ QL+ + Sbjct: 122 SRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEK 181 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 V + + ++ +LR+KL P P + T G+GY+ + Sbjct: 182 VQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLV 226 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 340 bits (874), Expect = 2e-92, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 3/225 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLIV+D++ + ++ LE +G V A + G + +ILD+ LP+ DG E Sbjct: 6 VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65 Query: 64 IRDLRQW---SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +R S VP+I+L+A+ EE DKI L GADDY+ KPF EL AR+R +RR Sbjct: 66 CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQ 125 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 D +++ D+TVD + + + EV L P EF LL +L+ N +V T+ ++L ++ Sbjct: 126 DFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKI 185 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WG + + + ++ +R+KLE + T G+GY+F + Sbjct: 186 WGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEV 230 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 340 bits (873), Expect = 2e-92, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 7/229 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+D+ +I + L +G V +A + L D+ I+D+ LP DG Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87 Query: 62 EFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 E +R LR ++ PV+ LSA+ EE DK+ L+ GADDY++KPF I E+ AR++ RR Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 Query: 119 ----HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + + +D+ + +++V LTP+EF LL L N GKV ++ Sbjct: 148 IQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRD 207 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+++WG + + + +++ LR K+E+DP+ P++ IT G GY+F Sbjct: 208 VLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 340 bits (873), Expect = 2e-92, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 2/225 (0%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M +LIV+DE I +++ L +G V A + L KPDLI+LD +P+ Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 GIE +R++R+ S +P+I+L+A++EE DK+ + G DDY+ KPF + EL AR++ L+R Sbjct: 61 GIEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRL 120 Query: 120 SATTAPDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A T + ++ D+T+ R + + + LTP EF+LL L N GK ++ +LL Sbjct: 121 EAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLE 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + ++ +LR+K+E+DPA P + T GIGY+ Sbjct: 181 YAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKL 225 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 339 bits (871), Expect = 4e-92, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 124/235 (52%), Gaps = 11/235 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+V+DE AI L L+ G V A L + I+LDL LP DG Sbjct: 3 MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDG 62 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +E + LRQ P+I+++A+++E DK+ L+ GADDY++KPF E+ AR++ +RR Sbjct: 63 MEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRT 122 Query: 120 SATT----------APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 + A ++ D+ +D + R + + LTP EF LL + G+ Sbjct: 123 TPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGR 182 Query: 170 VLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VL++ +LN VWG + + + I++ HLR+K+E DP +PR T G GY F+ Sbjct: 183 VLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFV 237 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 339 bits (871), Expect = 5e-92, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VEDE +IRRF+ LE G V EAE+ + L PDL++LDL LP DG+E Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 63 FIRDLRQWSAVP-VIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + +R+ P +I+L+A+ +++DKI L+ GADDY+ KPF EL AR++ LRR Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 A + + +D AA + + +EV LTP E+ LL + + N GK L + ++LN +W Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + L +++ LR+K+E +P+ PR+ T G GYR+ Sbjct: 187 GEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRW 228 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 338 bits (869), Expect = 8e-92, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 124/231 (53%), Gaps = 7/231 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +L+V+DE IRR LR LE + + EAE + + DLI+LDL +P DGI Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R +R+ A P+I+L+A+ EE++++ +AG DDY+ KPF E+ R++ LRR S Sbjct: 67 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 T------TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 T T ++ FS +++D A + EV LTP E+ LL L KV + + Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ-DPARPRHFITETGIGYRFML 225 LL +VW + ++ LR+KL + P + +T G+GY+F + Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 338 bits (869), Expect = 8e-92, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 132/233 (56%), Gaps = 11/233 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT---------RKPDLIILD 52 + +L+VEDE IR + L+ +G V A + L + PDL++LD Sbjct: 24 SRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLD 83 Query: 53 LGLPDGDGIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQAR 111 L LP +G++F R LR+ VP+++LSA+ E+D++ L+ GADDYL+KPFG EL AR Sbjct: 84 LMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143 Query: 112 LRVALRRHSATTAPDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKV 170 R LRR A P ++++ + + + + E+ L+P EFRLL + + + +V Sbjct: 144 CRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRV 203 Query: 171 LTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++ QLL ++WG + + S + +++ LR+K+E +P+ P + +T G GYR Sbjct: 204 WSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 337 bits (867), Expect = 1e-91, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 130/231 (56%), Gaps = 8/231 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP-DLIILDLGLPDGD 59 M VLIVED+ A+R + L +G+ + L + KP DL++LD+ LP D Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 60 GIEFIRDLRQWSA----VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 GI R+LR+ + VPV++L+AR +E+ + L+ GADDY++KPF +L +R+R Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 116 LRRHSATTA---PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 LRR ++F + +DL R + E+V LT EF +LA+L +N G+V + Sbjct: 121 LRRQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYS 180 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + Q+++ +WG +++ HLRQK+E DP PR+ T G+GYRF Sbjct: 181 REQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 3/224 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VLIV+DE+ +R + LE EAE + L K D+I++D+ +P DG Sbjct: 4 KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGF 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R+ S VP++ L+AR +E DK+ L G DDY+ KPF GEL AR+ +RR Sbjct: 64 TLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYH 123 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + + F + +D R + + V LT EF LL L + G+V ++ LL QVW Sbjct: 124 NKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVW 183 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + ++ + ++ LR KL+Q T GIGY+F + Sbjct: 184 GYDYTGNARTVDTHIKTLRMKLKQASD---FIQTVWGIGYKFEV 224 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 335 bits (860), Expect = 9e-91, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DE++I R + L+ + + A+ + L PDL+ILD+ LP DG E Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R+ S VP+++LSA+ E DK + GADDYL KPF EL R++ LRR Sbjct: 66 VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125 Query: 123 TA------PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + ++ ++ + + + V+LTP EF LL + + +V T+ QL Sbjct: 126 EQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +W V + + +++ LR+K+E+DPA+P++ T GIGY+F Sbjct: 186 FAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 333 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M+N +LIV+DE IRR L+ LE + + EA Q A I+LDL LP+ D Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 GI+ LR+ P+I+L+A+ EE++++ ++GADDY+ KPF E+ R++ LRR Sbjct: 61 GIQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRT 120 Query: 120 SATTAPD------PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 +TT +++F + +D A + +EV+LTP E+ LL L KV + Sbjct: 121 QSTTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDR 180 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRH-FITETGIGYRFML 225 QLL +VW + ++ LR+KL + + H T G+GY+F + Sbjct: 181 EQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 233 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 333 bits (856), Expect = 2e-90, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIV+DE IR +R L+ G EA L + DL+ILD+ +P DG Sbjct: 72 MAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDG 131 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 + +R++R PVI+L+AR EE DK+A L+ GADDY+ KPF EL AR++ L R Sbjct: 132 MTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT 191 Query: 120 -SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + A D + F ++T+D A+ + E+V LTP EF LL L +N G L++ ++L Sbjct: 192 MPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQ 251 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VW + + ++ LR L + + T GIGY+F Sbjct: 252 KVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKF 293 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 7/230 (3%) Query: 1 MTNV--LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M + LI +DE I + LE +G V +A + + T+ DL++LD+ +P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 DG E R +R +P+I LSA++ + DK+ L GADDY++KPF EL AR+ LRR Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 119 -----HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 ++ V +D R + E++ LTP EF +L +L ++ KV Sbjct: 121 FLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNV 180 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + QVW + E + + +++ LR+KL +D + + T G+GY F Sbjct: 181 ENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 11/232 (4%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+D+ I + L + + + + +P+LI+LDL LP DG E Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R++R+ S +P+I+LSA+ E DK+ L+ GADDY+ KPF EL AR++ LRR + Sbjct: 66 VCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVPS 125 Query: 123 TAPDPL---------VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 + V + D+ ++ + + + + + P E L L ++ +V T+ Sbjct: 126 QSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFTR 185 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 QLL+ +WG + + + +++ LR+K++ + T GIGY+F + Sbjct: 186 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKFEV 235 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 332 bits (854), Expect = 4e-90, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 3/227 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT+VLIVEDE+++ L L +G L E D+++LDL LP G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 + + LR S+VPVI+++AR E DK+ L+ GADDY++KP+ EL AR+R LRR Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGA 120 Query: 119 -HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + A D +++ V +D+ V+ E + L EF LL L+ N+G+VLT+ QL+ Sbjct: 121 DNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLI 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++VWG + V + L +++ LR K+E+DPA P H +T G+GY+ Sbjct: 181 DRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 332 bits (854), Expect = 5e-90, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 3/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DE +I + L+ G V + +PDLI+LDL LP DGI Sbjct: 3 KKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGI 62 Query: 62 EFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + R+LR+ S VP+++L+A + +DKIA LD GADDY++KPF EL +R++ RR Sbjct: 63 QVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ 122 Query: 121 --ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A +TV R + + LTP EF LL L + GKVL+++QLL+ Sbjct: 123 TLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLH 182 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VW + + + + +++ HLR K+EQ+ P + +T +GY+ Sbjct: 183 GVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 332 bits (853), Expect = 5e-90, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 129/228 (56%), Gaps = 6/228 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 N+L+V+DEQ I + L+ +G ++++ Q + + +L ILD+ LPD DG Sbjct: 4 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGFT 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA- 121 + +R+ PVI+L+A+ EE DKI L GADDY++KPF EL AR++ LRR + Sbjct: 64 LCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTKY 123 Query: 122 ----TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + L+ FS + +D+ E+++ LTP EF +L VL +N G+V++ +L Sbjct: 124 NSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEELF 183 Query: 178 NQVWGPNAVEHS-HYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++VWG +S + + +++ HLR+K+ P++ T G+GY+ Sbjct: 184 HEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 332 bits (852), Expect = 8e-90, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 119/234 (50%), Gaps = 11/234 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M VL+V+DE AI L L+ V A L D+++LDL LP+ G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 61 IEFIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 E ++ +R + PVIVL+A+ E DK+ L+ GADDY+ KPF E+ AR+ LRR+ Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 120 SATTAPD----------PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 + + + T+D + ++ + LTP EF L+ L+ + + Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQ 180 Query: 170 VLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VL++ QLL VWG + S + I + HLR+K+E DP RP++ T G GY F Sbjct: 181 VLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 332 bits (852), Expect = 8e-90, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 125/229 (54%), Gaps = 7/229 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+V+DE+ I R L L +G + L A D I+LD+ LP DGI Sbjct: 10 KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGI 69 Query: 62 EFIRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + LR S P++++SA+S+E DK+ AL+ GADDY++KPF EL AR++ LRR Sbjct: 70 EVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTE 129 Query: 121 ------ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 +P S + + +++ +E + LTP E+ LL L+ + LT+ Sbjct: 130 AEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRE 189 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +LL ++WG + + + + +++G LR+K+E +P P++ T G GY+F Sbjct: 190 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 331 bits (851), Expect = 8e-90, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+ +DE+ +R L + LE +G A + L++LD+ +P+ DG Sbjct: 5 MFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDG 64 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + +R++S VP+I+L+ARSEE D+I L GADDY++KPF EL AR+ LRR Sbjct: 65 LTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTH 124 Query: 121 ATT-APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + + +++D+ R + + V+LT EF LL + + N KV ++ QLL+Q Sbjct: 125 SFSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQ 184 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +WG + + ++ LR KL + + T GIGY+F Sbjct: 185 IWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFE 226 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+ +D+ + L AL +G V +A Q L A +++PDL+ILD+ +P DG Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R SAVP+++L+AR + DK+ GADDY++KPF + EL R+ LRR T Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM-PT 124 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 ++F + ++ + R +H G+ LTP EF LL ++ ++ G T+ LL +VW Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +A + + + LR+K+E +PA+PR T GIGY+F Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKF 225 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+V+D+ + + L G V A L A T PDL++LDL LP DGI Sbjct: 56 ARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGI 115 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R LR VPVI+L+AR++ESD+I L+ GADDY++KPF EL R++ LRR + Sbjct: 116 EVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 122 T--TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T A +++ + VD AAR R + LT EF LLA LL G+ T+ +LL Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + +++ LR+K+E DP PR +T G+GYR+ Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRY 278 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 19/242 (7%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VEDE I + + L +G V + DLIILDL LP DG Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 61 IEFIRDLRQWSA--VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR- 117 +E R +R S+ +PVI+L+A+S+E +KI L+ GADDY++KPF EL AR++ LR Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 118 RHS----------------ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLA 161 R + + K +++ + +E+ LTP EF LL Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 162 VLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 +++ N+G+VLT+ +LL ++WG + + + + +++ HLRQK+ + P T GIGY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 222 RF 223 R Sbjct: 241 RL 242 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 130/228 (57%), Gaps = 6/228 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VLI+ED+ I ++ L G A G+ A + D+IILD+ LP DG+ Sbjct: 4 KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGL 63 Query: 62 EFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + LR+ VP+++L++RSEE DK+ +L+AGADDY++KPF I EL AR+ +RR+ Sbjct: 64 EVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYR 123 Query: 121 ATTAPD-----PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 P F + +D + +E+ +T EF LL++ + N G+ ++ + Sbjct: 124 PEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTE 183 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+ VWG + + H + ++ LR K+E++PA+P++ +T G+GY+F Sbjct: 184 LLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 330 bits (849), Expect = 1e-89, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DE +IR + LE G RV A T GL A +PDLI+LDL LP DG+ Sbjct: 3 PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGM 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E LR+ S V +++L+ARS+E D++A L GADDYL+KPF EL AR+ LRR Sbjct: 63 EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 +++F+ V +D AR + + LTP EF LL L N +VL++ L+ +VW Sbjct: 123 KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVW 182 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 G + + +Y+ +R+K+E T G+GYRF+ Sbjct: 183 GADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFV 224 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 126/225 (56%), Gaps = 2/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +L+VED+ + L E G +V A GL A PDLIILD+ LP DG Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR--R 118 R + + + VP+++L+A +E+ +IA L+ GA DY+ KPF +GEL AR+R LR Sbjct: 61 FSVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNE 120 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 T ++ V +D +R + + E+ L+ EF LLA L++NAG L++ LL Sbjct: 121 RQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLE 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + + + +++ LR+KLE DPA P T GIGY F Sbjct: 181 RVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 132/234 (56%), Gaps = 12/234 (5%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA----------ATRKPDLIIL 51 N+L++EDE IR + AL+ +G A L + LIIL Sbjct: 22 ANILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIIL 81 Query: 52 DLGLPDGDGIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQA 110 D+ LP +G++ R +R+ VP++++SA+ E D++ L+ GADDYL+KPFG+ E+ A Sbjct: 82 DVMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLA 141 Query: 111 RLRVALRRHSATTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 R R LRR A P+++F D+ + EE++L+P E++LL + + + + Sbjct: 142 RCRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRR 201 Query: 170 VLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 V + QLL+QVWGP+ V S + +++ LR+K+E DP+ P++ +T G GYRF Sbjct: 202 VWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M N+LIVED+Q I + +R LE + + GL + PDLI+LDL LP DG Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 61 IEFIRDLRQW---SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 +E +RQ +++L+A+ EE D+I L GADDYL KPF EL AR+R LR Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 118 RHSATTAP-DPLVKFSDVTVDLAARVIHR----GEEEVHLTPIEFRLLAVLLNNAGKVLT 172 R P + + + VDL R +EE+ LT +EF LLA ++ G+V Sbjct: 131 RQLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWN 190 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + QL+ ++WG + + ++ LR+K+E DPA P T G+GY+F Sbjct: 191 RTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT+VLIVEDE+++ L L +G L E D+++LDL LP G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + + LR S+VPVI+++AR E DK+ L+ GADDY++KP+ EL AR+R LRR Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGG 120 Query: 121 ATTAP--DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + D +++ V +D+ V+ + + L EF LL L+ N+G+VLT+ QL++ Sbjct: 121 DDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLID 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +VWG + V + L +++ LR K+E DPA P H +T G+GY+ Sbjct: 181 RVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 126/229 (55%), Gaps = 7/229 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VED+ I+ + LE +G V AE + L KPDL++LD+ LP+ DG Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 61 IEFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 ++ + +R + + +P+I+LSAR E +D++ L+ GADDY++KPF EL AR++ LR Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 118 RHSATTAPDPL-VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + P PL + + D+ + + ++ E+V LT EF LL + + +V ++ L Sbjct: 121 EERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 L +VWG + + +++ +LR KL+ + G+GYR + Sbjct: 181 LQKVWGYTVSGDTRTVDVHISNLRSKLKSVSP---IIESVRGVGYRLAV 226 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 328 bits (842), Expect = 9e-89, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 10/227 (4%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L++ED ++ +G G DLIILD+ LP DG+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R+ S VP+I+L+A+ ESD++ + GADDY++KPF L AR++ +RR+ AT Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 123 TA---PDPLVKFSDVTVDLAARVIHRGEEEVH-LTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + +++ T++ R + E V LTP EF LL L+ N +V ++ QLL Sbjct: 122 GKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLE 181 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKL--EQDPARPRHFITETGIGYRF 223 QVWG + +++ LR+KL E P T G+GY+F Sbjct: 182 QVWGYQFYGDERTVDVHIKRLRKKLASEDKP----FLYTVWGVGYKF 224 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIVED+ I ++ +L +G + +A + + ++I+D+ +P DGIE Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 +R +R+ S VP+I+LSA+ E+SDKI L GADDY+ KPF + EL AR++ +RR Sbjct: 65 SMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYY 124 Query: 120 --SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + + + + ++ DV D+ + +G +E+ LT E ++L + N +V T+ Q+ Sbjct: 125 NETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQIY 184 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VWG + + + ++M LR K+E DP P+ T GIGY+ Sbjct: 185 DSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 4/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DE AI + LE +V + + D +I+DL LP DGI Sbjct: 3 KTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGI 62 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + +R++ +P+I+L+A++ + DKI L+ GADDY++KPF EL +R++V LRR Sbjct: 63 EATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTD 122 Query: 121 AT---TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 DP ++ ++ +D V+ + E++ LTP EF+LL L NA +VL++ Q+L Sbjct: 123 RAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQIL 182 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +VWG + + I++ HLR KLE DP P+ T G GY F+ Sbjct: 183 EKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFV 229 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 9/231 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +LI ED+ I + L +G ++ +A + + T DL+ILD+ +P DG Sbjct: 6 TTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGY 65 Query: 62 EFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E +R +R+ +P+I LSA++ + DKI+ L GADDY++KPF EL AR+ LRR Sbjct: 66 EVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFR 125 Query: 121 ATTAP-------DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 P + +T+D R + + + LTP EF +L +L ++ KV + Sbjct: 126 QLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSA 185 Query: 174 RQLLNQVWGPNAV-EHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + QVWG + + +++ LR+KL +D + T G+GY F Sbjct: 186 EHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 6/228 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+VED+ I L L G V GL A T DLI+LD+ LP DG Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + R LRQ P+++++A++EE DK+ L+ GADDY++KPF I E+ AR++ RR Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 121 -----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 A D ++ V V+ R + E V LT EF LL + + G+ ++ + Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL++VWG +SH + ++ LR K+E DP+ PR+ T G+GYRF Sbjct: 187 LLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 L+VED+ I +R L + V A Q+GL A T+ +LIILDL LP DG E Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 65 RDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R LR + P+I+L+A++EESDK+ L GADDYL+KPF E AR+ LRR + Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 PD + F +T+ + ++ V LTP EF LL +L NAG+ L + QLL QVW Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + + ++ LRQK+ Q T G+GY+ + Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEV 232 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 133/222 (59%), Gaps = 1/222 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L++ED+ IR +R AL DG V EA + GL D++++DL LPD DG Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R LR+ S VP+I+++AR++ D +A L+AGADDY++KPF + EL AR+R LRR + Sbjct: 79 ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 122 TTAPD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P ++ D+ + A V+ R E +HLT EFRLL L + +V ++ QLL +V Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 WG + + +++ LR K+E+DPA PR +T G+GY+ Sbjct: 199 WGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYK 240 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 15/237 (6%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 N+++ +DE+ I R LE +G V+ AE + + +PDL++LDL +P DG+ Sbjct: 3 ANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGL 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS- 120 E +RQ P+I+L+AR EE D++ L GADDY++KPF EL R+ LRR Sbjct: 63 EVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122 Query: 121 --------------ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNN 166 + A + +++ R + E +V LT EF LL +L Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMY 182 Query: 167 AGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 GKV ++ QLLNQVW + + +++ LR+K+E +P+ P T GIGY+ Sbjct: 183 PGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+D+Q+I LR LE D V A + D +ILD+ +P +G Sbjct: 4 KTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGF 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 F R +R S VP++ LSARS + DKI L G DDY+ K GE+ AR++ LRR ++ Sbjct: 64 AFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSAS 123 Query: 122 TTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P + +++F +T++L R + + V LTP E+ LL + L + V + QLL+++ Sbjct: 124 NQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKL 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 W + V H +R+++ LR+K+E +P P++ + GIGYRF Sbjct: 184 W--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFE 225 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 7/231 (3%) Query: 1 MTN----VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLP 56 M +L++ED++ I + L L +G +V A + GL A+ P L+++DL LP Sbjct: 9 MKRMTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLP 68 Query: 57 DGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 DG E R +RQ S VP+IV+SAR + DKI +L GADDY++KPF EL AR++ L Sbjct: 69 KVDGFEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHL 128 Query: 117 RRHSATT---APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 RR+ + ++ F +T++ R++ + + LT EF LL L G+V ++ Sbjct: 129 RRYHRYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSK 188 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 QL N+VW + + + +++ ++R+KL PR T GIGY+F+ Sbjct: 189 EQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFI 239 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T VLIV+DE+ I +R LE +G V A L D ++LD+ +P G Sbjct: 5 TTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGY 64 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + +R +R+ VPV+ L+AR E+ DKI L GADD++ K GE+ AR++ LRR+ Sbjct: 65 DVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRR 124 Query: 122 -TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 AP ++ F + +D+ A + + V LT EF LL + + +V T+ QL ++ Sbjct: 125 GEPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRL 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG H + +++G LR+K+E+DPA PR+ +T G+GYRF Sbjct: 185 WGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRF 225 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 130/234 (55%), Gaps = 10/234 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+VEDE+ IRR LR LE + V EAE + L + DL+ILD+ +P DG Sbjct: 5 ATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGW 64 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R +R++S VP++ L+AR EESD++ + GADDY+ KPF EL R++ LRR S+ Sbjct: 65 TTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSS 124 Query: 122 TTA---------PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 T P+ + F ++++ R E + L+P+E+ LL L NAG+VL+ Sbjct: 125 TPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLS 184 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ-DPARPRHFITETGIGYRFML 225 + LL++VWG S + ++ LR+KL + PA + T G GY+F + Sbjct: 185 RDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEV 238 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 4/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VLI+EDE+ I ++ L+ + + + + D +ILDL LPD G Sbjct: 6 KRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGE 65 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E + +R S VP+++L+A+ EESD+I LD GADDY++KPF EL AR+R +RR + Sbjct: 66 EICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 122 TTAPDPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 L++ D+ VDL + +E V LT EF+LL++ + N+GKV ++ +L+ + Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 V G + V + + +++ +LR K+E + ++ +T G+GYRF+ Sbjct: 186 VLGYDYVGYDRTIDVHIKNLRHKIECE--YYKYIVTVYGVGYRFV 228 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 4/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIVED++ I R + L +G + + + L+ILD+ LP G E Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA- 121 ++ +R+ PV++LSA+ EE+DKI L GADDYL+KPFGIGEL AR++ LRR+ Sbjct: 66 VLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLNF 125 Query: 122 ---TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 T +++ ++ +++ + G+ V LT EF +L + L N KV T+ QL Sbjct: 126 SWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLFK 185 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +WG N + + + +++ LR+K+E+DP+ P + T GIGY+ + Sbjct: 186 SIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLV 231 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 325 bits (835), Expect = 6e-88, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 6/229 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M+ +LI++DE+ I L+ +LE G V A + G+ +A PDLI+LD+ +PD DG Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDIDG 59 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R +R P++ LSA+ E D+I G DDY+ KPF + EL AR+ LRR Sbjct: 60 YEVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREK 119 Query: 121 A-----TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 L+ F ++T+DL +R + + LT EF +L +L + G+V ++ Q Sbjct: 120 RAILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQ 179 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + +VWG +A + + ++ ++R K+E + T GIGY++ Sbjct: 180 IYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 325 bits (835), Expect = 6e-88, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 3/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+D+Q + ++ E +G V + L PD++ILD+ LP DG+ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R LR +P+I+L+A+ EE+D++ L+ GADDY++KPF EL AR++ LRR A Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 123 TAPDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 +K+ + + R + E +TP EF LL L N +V T+ +LL VW Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + +++ LR KL P + T G+GY+F Sbjct: 186 GYDYFGDQRTVDVHIRRLRTKLASLPH--EYLQTVWGVGYKF 225 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 121/220 (55%), Gaps = 2/220 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+D+ A+ L L +G R + +PD+++LDL LP +G++ Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +D+R S VP+++L+A+ + D + L+AGADDY++KPF EL AR+R LRR Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR--GE 134 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 T + DV +D+ A + R + LTP+EF LL L +V T+ LL QVWG Sbjct: 135 TGQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWG 194 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + + +++ LR K+E+DP +P +T G+GY+ Sbjct: 195 YRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+V+D+ I+ + L +G R+ A T + A + +PDLIILD+ LPD DG E Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS--- 120 R +R + VP++ LS R ++ D+I G DDY++KPF L A+++ +RR+ Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 121 ---ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + + F ++ +D + R + + L EF+LL L NAG+V + L Sbjct: 126 GSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLF 185 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +WG ++ + +++ +LR+K+EQDPARP + IT G+GY+F Sbjct: 186 DSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKF 231 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DE+ IR+ L+ LE + A + L + PDLIILDL LP+ G Sbjct: 3 PKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGE 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E + +RQ P+++L+A+ E DK+ GADDYL KPF + EL AR++ LRR + Sbjct: 63 EVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 122 TTAPDPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + + + + + LT EF +L L+ N G+V T+ QL + Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 V G + + ++ ++R+KL + + + IT G+GY+F Sbjct: 183 VMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFE 225 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LI++DE + ++ L DG +V A L + PDLIILD+ LPD +G+E Sbjct: 5 KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS-- 120 ++LR+ + P++ LS + + DKI L G DDY++KPF EL AR+ LRR+ Sbjct: 65 LCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRIL 124 Query: 121 ---ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 +A ++ + +T+D A ++ ++ V LT EF +L++L + V + QL Sbjct: 125 TNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQLY 184 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +WG + + + + +++ +LR+K+E+DPA P+ +T GIGY+ Sbjct: 185 DHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 129/230 (56%), Gaps = 6/230 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M NVLI++DE I + L +G +VF+A G+ K +++LD+ +P DG Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 + +R+ +P+I+LSA+S++ DKI L GADDY+ KPF EL AR++ +RR+ Sbjct: 61 FQVCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 120 -----SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 S + +++F D+T++ + +E+ LTPIE+ +L +L NN G V + Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAE 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + +VW E ++ + +++ LR+K+E++P P+ T G+GY+ Sbjct: 181 DIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIE 230 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 4/227 (1%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M VLI+ED++ IR L+ VF A+ G+ P L++LD+ LP Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G E + +R S P+I LS + + DK+ LDAGADDYL+KPF EL+AR++ LRR Sbjct: 61 GYEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRS 120 Query: 120 S---ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 P + ++ +DL + + +V L E +LL +L+ N V + ++ Sbjct: 121 KMNANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKI 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +Q+WG + + +++ +LR+K+E++P++P+ T G GY+F Sbjct: 181 YDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 125/222 (56%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VED+Q I++ L L+ + +A + + DL+ILDL LP DG Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +++++ VPVI+L+AR EE DKI G DDYL+KPF EL R++ LRR+ Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + ++K+ V V+L R + + E V LT E+ LL +L N ++ T+ Q+++++ Sbjct: 121 KGRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRL 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 W E + + + + LR+K+E+DP+ PR T G+GY+ Sbjct: 181 WPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 130/227 (57%), Gaps = 3/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + VLI++DE+ I ++T L +G+ RV A T + GL + PDL+ILD+ LPDG+G Sbjct: 38 SKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEG 97 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + + +R S VP+I LSA+ EE+DKI L G DDY++KPF E+ R++ LRR S Sbjct: 98 YDICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVS 157 Query: 121 --ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + ++K ++ + + E + LTP E L+ L + +V+++ L Sbjct: 158 YLQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQ 217 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWG + + + +++ LR+K+E P++P +T G+GY+F++ Sbjct: 218 AVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFVV 264 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 114/221 (51%), Gaps = 1/221 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VED+ + T L G V A L A PDLI+LD LP DG E Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R VP+I+L+A ++IA L+AGADDY+SKPF EL R++ LRR Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 P+ + T+D +A I R EE+ LT EF LLA LL + G+ ++ QLL VWG Sbjct: 161 LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWG 220 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + + LR+K+E DP P T G+GYR Sbjct: 221 WEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M +L+++DE +R LR+ L+ +G VFEA+ + GL A KPDLI+LD+ +P+ Sbjct: 1 MAQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G++F+R + + P+I+L+A+ E+ DKI L+ GADDY++KPF E+ AR+R LRR Sbjct: 61 GLDFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRS 120 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 +++ ++ ++ +A + GE+ V LTP EF +LA L+ + G V ++ LL++ Sbjct: 121 YKAQPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDR 180 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + +++ +LR K+E DP PR+ T G+GYRF Sbjct: 181 TSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 6/230 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+V+DE AI LR LE + +V A + L A +K D IILDL LP DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 I + +R+ P+++L+A+ E+DKI L+ GADDY++KPF E+ AR+R RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 -----SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + D++VD + +G+ ++HLTP EF LL ++ KV ++ Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +LLN VWG + + + I + HLR+K+E +P P + T G GY+ Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLE 230 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+ +D+ +R +R E + + A + L +PD++ILD+ +P DG E Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R++R+ P+I+L+A+ EE D++ L+ GADDY++KPF E+ AR+R +RR Sbjct: 94 ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQPK 153 Query: 123 TAPDP-----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + F +T+DL R + E+V P EF LL L+ + G V ++ QLL Sbjct: 154 PKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQLL 213 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 QVWG + + +++ +RQ+L++ P T GIGY+F + Sbjct: 214 EQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKFGV 259 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 +LIV+DE+ I L L+ +G R ++ T + G+ +PDLI+LD+ LPD DG Sbjct: 11 KKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLDG 70 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +RQ++ VP+ LSA++E+ DKI L G DDY++KPF E+ +++ RR+ Sbjct: 71 YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + +F D+T+D A + R + LT EF +L L+ N ++ ++ +L V Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + + ++M HLR+K+E +P++P + IT G+GY+ Sbjct: 191 WGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKL 233 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 124/229 (54%), Gaps = 4/229 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVED+ I + L +G V A + GL A + DLI+LD+ LP DG Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 R+LR++ VPV++++AR EE D + L GADDY+ KPF EL AR+R + R+ Sbjct: 61 FAVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 121 A----TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 +VK + + L A + ++EV T EF LLA L + V ++ L Sbjct: 121 RILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREAL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +VWG A+ S + +++ +R+K+E+DPA PR+ T G GYRF L Sbjct: 181 FERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFRL 229 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 3/226 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +L+ EDE AIR F+ L+ G V EAE + L + D+++LD+ +P+ DG Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 61 IEFIRDLRQWSAV-PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 R V +I+L+AR+ E DK+ L GADDY++KPF EL AR++ LRR Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 120 S--ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + +DL A+ + + +V +TP E+ LL + N +V+++ +LL Sbjct: 121 ETLRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELL 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VWG N + + + LRQK+E++PA P+ T G GY++ Sbjct: 181 DAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKW 226 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 6/229 (2%) Query: 1 MTNV--LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M N+ LIVEDE I ++ L T +L PD +ILDL LPD Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 DGIE R +R+ S V +++LSAR ++DK+ L GADDY++KPF + EL AR+ LRR Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 119 HSA----TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 ++ ++ ++ + R + + L+ EF LL L N +V ++ Sbjct: 121 QDRWLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKS 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 QLL+ VWG + + + +Y+ +R+K+E +P+ P + T G+GY+F Sbjct: 181 QLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 322 bits (827), Expect = 5e-87, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 7/232 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVEDE + + + L+ +G +V A + + + +L ILD+ LPD DG Sbjct: 1 MRKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E ++ +R+ ++ PVI+L+A+ + DK+ GADDY+ KPF + EL AR++ LRR Sbjct: 61 SEVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTE 120 Query: 121 ATT-------APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 T + ++ + ++ + + L EF LL L +V+T Sbjct: 121 GTHHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTI 180 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 Q+ VWG + + + +++ LR K+E+DPA P+ T G+GYR + Sbjct: 181 AQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLVC 232 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DEQ I ++ LE DG V A + L + LI+LDL LP G E Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R S+VP+I+L+A++EE +KI + GADDYL+KPF + EL R+R LRR Sbjct: 66 VCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYRD 125 Query: 123 TAP-DPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 +P ++ F D+ VD+ V+ + V+LT EF++L V L+N +V ++ +L+ + Sbjct: 126 FSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVEK 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +G N + Y+ ++RQK+E + P + T G+GY+F+ Sbjct: 186 AFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFI 230 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 322 bits (827), Expect = 7e-87, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 7/228 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLIV+DE +IR+ L T L G V A + L PD++ILD+ +P DG Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +++R+ S VP+I+L+A + +D+I L+ GADDY+ KPF EL+AR+R LRR + Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 123 T-----APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 ++ F+ +T+DL R I++ E + LT +EF LL +L++ +G+ ++ +L Sbjct: 136 AFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADIL 195 Query: 178 NQVWGP--NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + +++ LR KLE DP+ P +T G GY F Sbjct: 196 QEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 322 bits (826), Expect = 7e-87, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 128/222 (57%), Gaps = 4/222 (1%) Query: 6 IVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIR 65 +VED+ +I + L +G + A + G+ DL++LD+ LP +G++F++ Sbjct: 2 LVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFLK 61 Query: 66 DLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAP 125 +R+ S +PV+++SA+ + DK L GADDY++KPF + EL AR++ A+RR + +A Sbjct: 62 IIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSAE 121 Query: 126 DP----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 +P +++ + +D+ + + E + LT E++LL + +N KV T+ Q+ VW Sbjct: 122 EPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRSVW 181 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + + ++M LR+K+E DP+ P++ T GIGY+ Sbjct: 182 NEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 3/225 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L++ED+++I ++ LE + +V + G L+++DL LP DG Sbjct: 1 MA-ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDG 59 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +R S VP+IV+SA+ + DK+ + GADDY++KPF EL AR++ +RR+ Sbjct: 60 FALCEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYE 119 Query: 121 AT-TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + ++F DV +D+ R + E++ LT EF LL L N+ G+V T+ +L Sbjct: 120 RSYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAA 179 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VW + S + +++ ++R KL+ P++ T G+GY+F+ Sbjct: 180 VWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFI 223 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 132/221 (59%), Gaps = 4/221 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VEDE + +F+ L+ +G V GL A PDLI+LD LP G++ Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 64 IRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + LRQ S VP+I+L+A+ + SD++A LDAGADDY+ KPF + EL AR+R LRR+ Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNH-- 123 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 L++F D++++ R + RG + LT EF LL L+++ +VL++ Q+L +VWG Sbjct: 124 EEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWG 183 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + S+ + +Y+ +LR KLE + + R T G+GY Sbjct: 184 YDFMGDSNIIEVYVRYLRLKLEAEQEK-RLIQTVRGVGYVL 223 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 N+LIV+DE+ I + L+ +G V++ T + L ++ D+ ILD+ LPD DG Sbjct: 4 NILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDGFH 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ P+I+L+A+ E+ DKI L GADDY++KPF E+ AR++ LRR+ Sbjct: 64 ICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123 Query: 123 TAP-------DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + ++ +EV LTPIEF +L L + GKV+ + Sbjct: 124 NNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSEE 183 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 L VWG +++++ + ++G LR+K+ + P+ T G+GY Sbjct: 184 LFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M VLI +DE+ I L LE DG ++ A L + D+ I+D+ +P DG Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +R +R+ +PVI+LSA+SE DKI LD GADDY++KPF E+ AR++ LRR++ Sbjct: 61 YHLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 121 ATTAPDPL-----VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + + ++ + +++ +++ EV+LT E+++L LL N GKV T++Q Sbjct: 121 KSMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQ 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VW + + +++ +LR K+E D P + T G+GY+ Sbjct: 181 IFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKL 228 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+V+D+ ++R +R L+ G V A + L A RKPDL++LDL LP G+ Sbjct: 9 ARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGL 68 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS- 120 E R LR+ VPV++L+A EESD++ L+ GADDY+ KPF EL R+ LRR Sbjct: 69 EVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + A ++ + +DL AR E+ LT EF LL LL + G+ ++ +LL QV Sbjct: 129 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + ++M LR+K+E DPARP T G+GYR+ Sbjct: 189 WGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRY 230 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 3/223 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L++ED+ I R L L+ +G VF A + GL A D+I+LD+ LP G+E Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ S VP+I+L+A+ E SDK+ D GADDY++KPF EL AR++ LRR + Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 123 TAPDPLVKFSDVTVDLAARVIHRG--EEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + +F D+T++ + + R + + L+ EF LL L+ N G VL++ ++L +V Sbjct: 124 VVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEEV 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + + L +Y+ +LR K+++ P + T GIG+ F Sbjct: 184 WGFDYIGNDNILDLYIKYLRDKIDR-PYERKFIQTVRGIGFIF 225 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+ EDE AIR F+ L+ G VFEA + + D+++LD+ +P+ DG Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 E +R V +I+L+AR+ E DKI L GADDY++KPF GEL AR++ LRR Sbjct: 61 FEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRV 120 Query: 120 SATTAPDP-LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 D +K +DLAA+ + + + + LTP E+ L+ L+ N VL++ LL+ Sbjct: 121 EKVKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLD 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG N + + + LRQK+E DP+ P + T G GY++ Sbjct: 181 AVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKW 225 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 2/226 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 +LIV+DEQ + ++ ALE +G + A TL+ G T +P L ILD+ LPDG+G Sbjct: 4 PRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGEG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + + +R S +P++ LSA+SEE DK+ L G DDY++KPF E+ R++ LRR S Sbjct: 64 YQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVS 123 Query: 121 ATTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 AP ++ ++ E + LT E LLA L N ++L++ L Q Sbjct: 124 MMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQ 183 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWG + + + +++ LR+K+E +P+ P + T G+GYR + Sbjct: 184 VWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VEDE+ IR L L +G RV A L KPDLI+LDL LP G E Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 ++ +RQ + P+IVL+AR +E DK+ L+ GADDY++KPF EL R++ LRR Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 + S+++++ G+ + LTP EF++L +L N G+V ++ +L +V+G Sbjct: 125 QVTNV-SISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGD 183 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + + ++ +LR K+E T GIGY+ + Sbjct: 184 IYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLV 224 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 100/223 (44%), Positives = 148/223 (66%), Gaps = 2/223 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+DE + F+R LE +GMRV A + + + PD+++LD+ +P DG E Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-HSAT 122 +R +R +S VPVI+L+A+ EE D++ L+ GADDY+ KPF EL +R+R LRR ++ Sbjct: 69 LRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQP 128 Query: 123 TAPDPLVKFSD-VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 P LVK D +++D A R + + V+L P E+RLL L+ NAG VLT LL++VW Sbjct: 129 PIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKVW 188 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 GP + SHYLR+Y+ +LRQK+E+DP+ PR+ +TE G+GYRF+ Sbjct: 189 GPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 3/228 (1%) Query: 1 MTN---VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPD 57 MT +LIVEDE I L LE G R + R PDL++LD+ LP Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 58 GDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 DG+E ++LR +S +P+I+L+AR EE D++ L+ GADDY+ KPF E+ AR++ LR Sbjct: 61 KDGMEVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLR 120 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R + + + +D +R + G + LTP EF +L V+++ +V ++ +LL Sbjct: 121 RSNTPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELL 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 + G + + ++ +LR+K+++ + G GY+F + Sbjct: 181 DLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFNI 228 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 125/229 (54%), Gaps = 5/229 (2%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M V +VED+ I R +R LEG G V T + E+ P+L +LD+ +P D Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 60 GIEFIRDLRQWSAV---PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 G+E R +R ++ PVI L+A++ E+DKIA LD GADDY++KPF EL AR++ L Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 117 RRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 RR P +V D+ +D A + V T EFRLL L + G+V T+ QL Sbjct: 121 RRFER-PLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQL 179 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 L+ VW + +Y+ +R+K+E++P PR+ T G GYRF + Sbjct: 180 LDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEV 228 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 6/230 (2%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M +LIV+DE I + L+ + V++ + + DL +LD+ +P Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G+E + +R+ P+I+L+A+ E DKI L GADDY++KPF E+ AR++ LRR+ Sbjct: 129 GLELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRY 188 Query: 120 SATT----APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + +++ + ++ E + LTP EF +LA+L G V++ + Sbjct: 189 KRYNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEE 248 Query: 176 LLNQVWGPNAVE-HSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 L +Q+W ++ + +++ HLR+K+E P++ T G GY+ Sbjct: 249 LFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 298 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LI +D+ I + + +LE +G RV A+ ++ + A T KPD++I+D+ +P DG+E Sbjct: 5 TILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + ++ VP+I+LSA+ + DKI G DDY +KPF EL R++ LRR A Sbjct: 65 ASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAV 124 Query: 123 TAP--DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ++ + + ++ + R++ +EV LT EF +L ++ ++ ++ ++ QLL Q+ Sbjct: 125 PEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQI 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 W + + +++ LR+K+E+D A+P T G+GY+F Sbjct: 185 WESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFE 228 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M ++IV+DEQ +R L+ G AE +R L PDLI+LD+ +P DG Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E R++R ++PVI LS R DK+A + GADDY++KPF EL+AR++ +R ++ Sbjct: 61 LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYA 120 Query: 121 ATTAPD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + P +++ + +D A E + LT E +LL + +V T QL ++ Sbjct: 121 MNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDR 180 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +W +A + +++++ HLR+K+E+ P RP + T G GYRF+ Sbjct: 181 IWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFV 225 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VLIVEDE IR +R + +G V EA + L + DL ILD+ +P DG+ Sbjct: 3 KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGL 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R++R+ S P+I+L+A+S+E DK+ + GADDY++KPF L A+ + LRR Sbjct: 63 AVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT-G 121 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T ++ F+ +T++ + + EE+ L+P E+ LL L +N G L++ ++L+ VW Sbjct: 122 TLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVW 181 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + + + LR+KL + + T G GY+F + Sbjct: 182 GYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKFEV 222 >UniRef50_A9AXT6 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXT6_HERA2 Length = 231 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 134/224 (59%), Gaps = 2/224 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+ EDE +R F+R L+ G V EA L T +P LIILDL +P G E Sbjct: 7 RVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRLTGFE 66 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS-- 120 + +R+ S VP+IVL+A E DK+ A D GADDYL KPFG+ EL AR+R LRR Sbjct: 67 VCQRIREQSIVPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRRSQWS 126 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ++ ++ +DL A + R +V LTP EF LLA L+ + KVLT R LL V Sbjct: 127 VQPQASGTKRYGELEIDLEAHSVRRAGLDVRLTPTEFALLAYLITHPNKVLTHRMLLQHV 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG + + YLR+Y+G LR+KLE DP+ PRH +TE GIGYRF+ Sbjct: 187 WGDQYRDEAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGYRFV 230 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 5/228 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 ++LIV+D+Q I RF+ L +G +V A + L L ILD+ +P DGI Sbjct: 19 NSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGI 78 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R +R+ ++P++ LSA+S + DK+ GADDY+ KPF E AR++ LRR++ Sbjct: 79 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138 Query: 122 TTAP-----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + + + +D +R + E ++LT E+ +L ++ +V T ++ Sbjct: 139 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEI 198 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VW A E ++ + +++ LR K+E++P P+ G+GY+ Sbjct: 199 YESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+D++A+ + L DG + L + KPDL++LDL LP DGI Sbjct: 32 ARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGI 91 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R +R S VP+++L+A+S+ SD + L++GADDY+ KPF EL AR+R LR Sbjct: 92 EVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR--PG 149 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 ++ +DVT+D+A ++ RG E + LTP+EF LL L +V T+ LL QVW Sbjct: 150 DQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVW 209 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 G + + +++ LR K+E+DP P +T G+GY+ Sbjct: 210 GYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 1 MTN--VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M N +L+VED+ I +R LE G R A A +PDL++LD LP Sbjct: 9 MPNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGV 68 Query: 59 DGIEFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 DG+ R+ PV++L+AR+EE ++ AL GADDYL KPF EL AR++ LR Sbjct: 69 DGLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLR 128 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R A+ D K + VD R + + L EF LLA L ++ G+V ++ +LL Sbjct: 129 RAYASGYRDCSPKNG-LLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELL 187 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + +++ LR+KLE DP RP + +T G+GY+F Sbjct: 188 ERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKF 233 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 NVLIVEDE+ I + L+ G V+ A GL + L I+D+ +P DGI Sbjct: 5 NVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGIT 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 + LR+ PVI+L+A+SEE DKI L+ GADDY++KPF EL AR+ LRR+ Sbjct: 65 MVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSKY 124 Query: 120 ----SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 S + + ++ + + E + +TPIEF++L +L+ N G+V + + Sbjct: 125 LSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAEE 184 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + +VW A+ ++ + +++ ++R+K+E D P++ G+GY+ Sbjct: 185 IYEKVWNEEAI-NTDTVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIE 232 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 318 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 124/220 (56%), Gaps = 4/220 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+DE +R +R L + V EA L PDL++LD+ +P DG + Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 ++ +R+ SAVPVI+L+AR +D++ L GADDY++KPF EL AR++ LRR + Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQV 127 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 + ++ +T+ A R + LTP EF LLA+L + G+V ++ +LL+++WGP Sbjct: 128 EANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWGP 187 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + + ++ +LR KL + +T G+GYRF Sbjct: 188 DFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRF 224 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 6 IVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIR 65 +VEDE + + + LE G V A R + A PD++ILDLGLP DGIE R Sbjct: 68 VVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVCR 127 Query: 66 DLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAP 125 LR +S V++L+ARS+E D + L GADDY++KPF EL ARL+ LRR T Sbjct: 128 RLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKTGQ 187 Query: 126 D-------PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 ++ F +++D+ AR + +E V LT EF LLA L V ++RQL++ Sbjct: 188 RADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQLID 247 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + V H + +++GHLR+KL+ D +R ++ T G+GYR Sbjct: 248 RVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DE +IRR L T L G V A + L+ P L++LD+ +P DG Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 ++LR+ S VP+I+L+A E D+I L+ GADDY+ KPF EL+AR+R LRR Sbjct: 67 VCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKI 126 Query: 123 T-----APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 T ++ + +D R +++ E V LT +EF LL +L++ AG+ ++ +L Sbjct: 127 TTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASIL 186 Query: 178 NQVWGP--NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + +++ LR KLE DP+ P +T G GY F Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 9/233 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA---TRKPDLIILDLGLPD 57 M ++++VEDE+ + + AL +G RV L +PDLI+LDL LP+ Sbjct: 1 MADIVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPN 60 Query: 58 GDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 DG+E R +RQ P+++L+ARS E D++ L+ GADDYL+KPF + ELQAR+ LR Sbjct: 61 VDGLEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILR 120 Query: 118 RHS------ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVL 171 R T + D+T+D +R + + VHLT EF LL +L N G+V Sbjct: 121 RVEMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVF 180 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++ LL++VWG + V + ++ LR+KL + +T G+GY++ Sbjct: 181 SRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LI+EDE +R L+ LEG+G RV A + GL KPDL++LD+ +P DG Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 61 IEFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +LR+ + VP+++L+A+ + D++ LDAGADDYL KPF EL AR+R LRRH Sbjct: 61 FALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRH 120 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 ++F +V +D+ + RG +++H T E+ +L +L G+ +++ + L+ Sbjct: 121 QREKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDV 180 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VWG A + + ++ LR K+E DP +PR T G+GYR Sbjct: 181 VWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 90/231 (38%), Positives = 135/231 (58%), Gaps = 13/231 (5%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +VL+VEDE A+ L+ LE +G V A + L++A PDL+++D LP GI Sbjct: 3 AHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGI 62 Query: 62 EFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 E R LR + + VP+I+L+AR EE+D++ LD GADDY+ KPF + EL AR+R LRR Sbjct: 63 EVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRR 122 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 A D +++ D+T+D A + R + E+HL P EFRLL L+ + G+V ++ QLL+ Sbjct: 123 IRPGLAED-VIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLD 181 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKL----EQDPARPRHFITETGIGYRFML 225 VWG + + + +++G LR+ L E+DP T GY F + Sbjct: 182 AVWGSDVYVEARTVDVHVGRLRKALNNKEERDP-----IRTVRSAGYAFDV 227 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLI+EDEQ + + L+ LE +G +V+ + GL + PD+++LDL LP+ G E Sbjct: 9 TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEE 68 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R+ P+++L+A+ E +KI L GADDY+ KP E+ ARL+ LRR Sbjct: 69 IARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE 128 Query: 123 TA--PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ++ ++T+D A+ I+ E+ LT EF +L+ L KV ++ L +++ Sbjct: 129 PGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLADRI 188 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +G S + ++ +LR+K+EQ+P +P T G GY+F Sbjct: 189 YGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 128/229 (55%), Gaps = 6/229 (2%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M N +LIVED+ I L ++ V L +A + DLI+LDL +P + Sbjct: 6 MANQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLN 65 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G+E R+LR+ P+I+++A++EE DK+ L+ GADDY++KPF I EL+AR + +RR Sbjct: 66 GVEVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRS 125 Query: 120 SATTAPDP-----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 A + F D+ V++ R + +++ L+P EF LL +L N G+ ++ Sbjct: 126 DAANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRS 185 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +LL+ +WG N + H + ++ LR K+E D P + +T GIGYRF Sbjct: 186 ELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRF 234 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 2/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLI+ED+ I ++ ++ G A + GL + PD IILD+ LP +G E Sbjct: 6 KVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGWE 65 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + +R + VP+I+L+ + E D I L+ GADDY+ KPF EL AR++ LRR Sbjct: 66 VCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTIL 125 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + + ++F ++ + + + EEV + P E L L N +VLT++QLL++VW Sbjct: 126 SESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRVW 185 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 G + +++ +R KL + A+ +T G+GYRF Sbjct: 186 GYEFNGDPRTVDVHIKRIRDKLAEHKAK-WSIVTIRGVGYRFE 227 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVED+ +I + LE V GL E K DLIILD+ LP DG Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA----- 115 + +R + VPV+++SA+ EE DKI L GADDY++KPF GEL AR++ Sbjct: 61 FDILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 116 -LRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 L+ + + ++ + ++ +R + ++EV+L EF LL + +V + Sbjct: 121 RLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKD 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +L +WG +++ S + +++ +R+K+E +P++P++ T G+GYR + Sbjct: 181 ELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIRV 231 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 5/227 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+DE I + L+ + VF+ T + L + DL ILD+ LP G+ Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA- 121 + +R P+I+L+ + E DKI L GADDY++KPF EL AR++ LRR+ Sbjct: 64 ICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKF 123 Query: 122 ---TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + ++ S + +++ + E+++ LTP EF +L +L N G V++ L + Sbjct: 124 SGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELLFH 183 Query: 179 QVWGPNAVE-HSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++WG ++ + +++ HLR+K+ P++ T G+GY+ Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 95/224 (42%), Positives = 135/224 (60%), Gaps = 3/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VED+ +I L L +G V +A+ + GL A PDL++LD+ LP+ +G E Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 64 IRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +++LRQ PV+VLSA+ E+DKI L+ GADDY+ KPFG+ EL AR++ LRR + Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 123 TA--PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P V F DV+VD+AAR + R V LT EF+LLA L + G+ T+ +LL+ Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG + + + +M LR K E DP PRHF+T G+GYRF Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LIV+D++ + R + L G V A +GL + +ILD+ +P DG E Sbjct: 13 ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFEM 72 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS--- 120 ++ LR+ S +PV++L+A EE+D+I L+ GADDYL K F EL ARLR RRH Sbjct: 73 LKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRLSM 132 Query: 121 ----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + D + ++ + L AR + + ++LTP+E+ LL L +VL++ QL Sbjct: 133 DRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRDQL 192 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L+ V G + + +++ LR+KL +DP PR T +GY F Sbjct: 193 LDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 111/227 (48%), Gaps = 5/227 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +LIVED+ I L L + V + GL D +ILDL LP DG+ Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 62 EFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R R P+I+ SARS E +I L+ GADDYL+KPF + EL AR++ LRR Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 ATTAPDPL----VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 A + + + + +D AR + LTP EF LL + GKV ++ L Sbjct: 125 ALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LN VWG + H + ++ LR K+E DPA P +T G GY+ Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPD-GDG 60 +LIV+DE + R ++ L G V A + + + DL+ILD+ LP +G Sbjct: 4 KTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGPLNG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + +R++S +P+I+L+ R+ E D+I DAGADDY++KPF + EL R++ LRR Sbjct: 64 FEVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRRSH 123 Query: 121 ATTA--PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + P+ KF D+ ++ A + + EV LT E+++L L NAGKV+T LL Sbjct: 124 PSEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHEDLLT 183 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +VWG HYLR Y+ LR+K+E DP P++ + + GIGY L Sbjct: 184 RVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYLAL 230 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 83/258 (32%), Positives = 123/258 (47%), Gaps = 37/258 (14%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LIVEDE I ++ L +G R + L +PDLIILDL +P DG+E Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 64 IRDLRQWSAV--P-VIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 +RQ + + P +++L+AR EE D+I L GADDY+ KPF EL AR+R LRR Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 120 SATTAPDPLVKFSDVTVDLAARVIH---------------------------------RG 146 + P + + TVDL R Sbjct: 123 RGSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQLEIA 182 Query: 147 EEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQD 206 + + LTP+EF LLA ++ G+V + QL++++WG + + ++ LR+K+E D Sbjct: 183 QIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKKIEPD 242 Query: 207 PARPRHFITETGIGYRFM 224 P+ P T G+GYRF Sbjct: 243 PSAPTFVKTVVGVGYRFE 260 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 130/227 (57%), Gaps = 4/227 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+++DE AIR L+ +G +V AE +RG++E + +PDL++LDL LPD G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + +++ + S +PVI++SA+ E DK+ L+ GA+DY++KPF EL AR++V LRR+ Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 121 ATTAPD----PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + ++ ++ +V+ + ++ LT E+ +L L K+ T+ +L Sbjct: 121 HNDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDEL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L VWG + S + + + LR+K+E+D P++ T G GY+ Sbjct: 181 LEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQL 227 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 4/228 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +LI++DE IR L L+ G +EA L + + DL+I D+ +P DG Sbjct: 11 IKTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDG 70 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 E ++ +R S VP + LSA+S++ DKI L GADDY+ KPF E+ +R++ RR Sbjct: 71 YELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMD 130 Query: 119 --HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 +++ DV +DL + +++ ++ +T EF++L++L+ +AG+V T+ + Sbjct: 131 VFSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASI 190 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VWG + + + +Y+ LR+K+E +P +P + IT G+GYRF Sbjct: 191 YEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFE 238 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 4/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 N+LIV+DE+ IR L L+ +G VF+A+ + L + L++LD+ +PD DG Sbjct: 3 NNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGF 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 E +R+ +P+++LSA+ E+ DKI + GADDY+ KPF EL R+R RR Sbjct: 63 EVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYF 122 Query: 120 --SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + D +++ + +D I EV LT EF +L +L N G+V + ++ Sbjct: 123 LNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIF 182 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +VW + ++ + ++M LR KLE+ + T G+GY+ Sbjct: 183 EKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIE 229 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 + IVEDE+ I RFL+ LE +G E R DL++LD+ LP DG+ Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ S++P+I+L+A+ E DK+A LD GADDY++KPF I EL AR+R ALR+H Sbjct: 66 ICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVPD 125 Query: 123 TAP---DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + ++ ++ + + E VHLT E+ LL ++ N VLT+ Q+L + Sbjct: 126 NGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILEK 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 VWG + ++ + +Y+ +LR KL D ++ T G+GY Sbjct: 186 VWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M VLIVED +R +R LE G RV A Q GLLEA +PDL++LD+ +P DG Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +EF+R R VPVI L+AR E DK+ L+ GADDY++KPF + EL AR+R LRR S Sbjct: 82 LEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSS 141 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P+ +++ ++ +D R E V LT EF L++ L G+V T+ +LL Q+ Sbjct: 142 -EPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQL 200 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 A+ + +++ +LR K+E +P +PR T G+GYR Sbjct: 201 -QEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRL 242 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 132/221 (59%), Gaps = 3/221 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++LIVEDE+ I R L+ LE +G V GL AA L++LD+ LP G+E Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 63 FIRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R LR+ S PVI+L+AR DK+ LD GA+DY++KPF I EL AR+R ALR++ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 TTAP-DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T + + D+ V+ R + RG++EV LTP EF LL +L + +VLT+ Q+L+ V Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 WG + + ++ + +Y+ ++R+KL P + T G+GY Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGY 224 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 9/232 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDG 60 +L+V+D++ I + L +G V +A GL L ILD+ +P DG Sbjct: 25 AKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMDG 84 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 + ++ +R+ S +PVI+LSA+S + DKI L GADDY++KPF EL AR++ LRR Sbjct: 85 LSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFT 144 Query: 119 ------HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 + + D +++ + ++ + R + ++E LTPIE+ +L +L +N G+V + Sbjct: 145 EFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFS 204 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + +VW A E ++ + +++ LR+K+E D + T G+GY+ Sbjct: 205 TDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIE 256 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 3/228 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M ++LI +D I L + + + A + + P +++LD+ +P DG Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R +R S VPVI+++AR E+ +KI LD GADDY+ KPF E+ AR+R LRR + Sbjct: 61 YEVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMT 120 Query: 121 A---TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + ++ +++ ++L +H G ++ LT E + L +N KV T+ LL Sbjct: 121 KKENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLL 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 + +WG + S + ++ LR KL+ T G+GY+F + Sbjct: 181 DSLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEV 228 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 L+V+D+ IR R LE G V EA L + D+++LDL LP+ DG + + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 65 RDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 ++R+ +PVI+L+A +E D+I LD GADDYL KPF EL +R+R LRR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 124 APD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 A + L++ + VD+A R + G++ ++LTP EF LL L ++ +V ++ LL++VWG Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 + S + +++ LRQKL + T G GYRF++ Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVV 224 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIV+DE+ IR LR L +G V EAE ++GL + DL+ILD+ LP DG Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +R++++++ PVI+L+AR + D++ + GADDY++KPF L AR++ LR+ + Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTN 125 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + +++ D+ ++ + + + E+ L P E+ LL L+ N L++ +LLN+V Sbjct: 126 NMV--ESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEV 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WG + + + ++ +LR+K+ ++ T GIGY+ L Sbjct: 184 WGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKLDL 223 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 3/223 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DEQ + + + + L G +A T + + EA PD+++LDLGLP+ DG+E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R +R +S +++L+AR E DKI L GADDY++KPF I EL R+ LRR + Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 123 TAPDPL---VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T P + + D+ +D A + GE V LT EF LL L G+VLT+ L+ + Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 VW V + +++G+LR+KL D T G+GYR Sbjct: 222 VWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLI++DE+ + + LR + E +G V A + L + D IILDL LP DGI Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +RQ S V +I+L+A+ + DKI L+ GADDY++KPF EL AR+R +RR Sbjct: 78 LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEKG 137 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 +F D+ VD+ +R ++RGEE ++LTP EF +L +L+ N G+V + ++ VWG Sbjct: 138 EVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVWG 197 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + + +++ +LR+KL+ + T+ G+GY F Sbjct: 198 EPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYF 237 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 129/229 (56%), Gaps = 11/229 (4%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDG-MRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M ++I+ED+ I + +R LE +G V T + GL P+LI+LD+ LP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 59 DGIEFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 +G E R LR + VP+I+L+AR++E+DKI L GADDY++KPF + EL AR+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 LRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 LRR T P + + +D V+ +E++LT EF LL +L + G+VLT+ Sbjct: 121 LRRTEGT--PSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREY 178 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 LL++VWG + + L +++ +RQKL D + T GIGYRF+ Sbjct: 179 LLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFV 223 >UniRef50_A0LU58 Two component transcriptional regulator, winged helix family n=16 Tax=Bacteria RepID=A0LU58_ACIC1 Length = 240 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 114/225 (50%), Positives = 155/225 (68%), Gaps = 1/225 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +VL+V+DE AI R LR L G V+ A + L KPDL+ILDLGLPD DG Sbjct: 1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 I+ I +R WS +P++VLSAR +E+ K+ ALDAGADDY++KPFG+ EL ARLR ++RR Sbjct: 61 IDVIGGVRGWSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRAR 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T+A ++ D T+DLA + + RG+E + LTP E+ +L +L +AG+++T RQLL+ V Sbjct: 121 PTSAEPRIIT-PDFTIDLADKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDV 179 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WGP +HYLR+YM LR+KLE DPA PR+ TE GIGYR ++ Sbjct: 180 WGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRLVV 224 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+D+Q+I LR LE D V A + ++LD+ +P +G Sbjct: 5 NTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGF 64 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-S 120 E R +R S VP++ LSARS++ DKI L G DDY+ K E+ AR++ LRR + Sbjct: 65 ELCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSAT 124 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + ++ + + ++L+ R + V LTP EF LL V + V T QLL + Sbjct: 125 RRPMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAKF 184 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 W + V H +R+++ LR+K+E DP +P+ + G+GYRF Sbjct: 185 W--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFE 226 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 134/225 (59%), Gaps = 4/225 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M N+LI+EDE+++ ++ LE +G V+ E G+ + DL+ILDL LPD DG Sbjct: 1 MNNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + LR+ S V + +L+A+S SDKI L+ GAD+YL+KP EL AR+ RR Sbjct: 61 EEVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVG 120 Query: 121 ATTAPDPLVKFSD--VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + ++ F+D + +D+ R++ EE++LTP EF +L +L +N GKV T+ ++ Sbjct: 121 --CKKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIE 178 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +G + +++ +LR+K+E+D P++ +T T IGY+F Sbjct: 179 RAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+++D+ I L+ AL +G RV A +G+ A P+L+ILD+ LP DG Sbjct: 3 ARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGW 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E + R+ + P+++LSAR E K+ L+ GADDYL KPF + EL AR++ LRR Sbjct: 63 EICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRR-- 120 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + +++FSD+ +DL AR + R + LT EF LLA +++ +VLT+ Q++++VW Sbjct: 121 -ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVW 179 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + S+ L +Y+ LRQK+E + R T G+GY Sbjct: 180 GLDFTGGSNVLEVYINMLRQKIEDYGS--RIIHTVRGVGYVL 219 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 19/239 (7%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDG 58 M ++LIV+D I L LE +G V AE+ + L + +P+LI+LD+ +P+ Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 G E +R+ +P++ LSA+ + DK+ + GADDY++KPF EL AR+R LRR Sbjct: 61 SGYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 119 HSA-------------TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLN 165 + ++P ++KF D+ + ++ +++ L+ EF+LL L Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 166 NAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 NAG V T+ Q+ ++VWG + + +++ +LR+KLE + T+ G GY F+ Sbjct: 181 NAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFI 235 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 1/222 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +LI++D++ I +R L +G V A + GL +PDLIILD+ +PD DG+ Sbjct: 3 TKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGL 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E + LR+ + +P+++++ +D++ L+ GADDYL KPF EL AR++ LRR Sbjct: 63 EVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 D + FSD+ VDL+ R RG + + EF LL + + +VLT+ L+++VW Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + S+ L +Y+G+LR KLE PR T G GY Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQ-NEPRLIHTVRGAGYVL 223 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 ++LIV+DE+AI ++ LE +G R + +A + + + K DLI+LD+ + G Sbjct: 4 ASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 E +R++S P+ L+ARS ++DK++ GADDY++KPF EL AR+R L+R Sbjct: 64 FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 123 Query: 120 -SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 S T+ + + T + G E V + +LL + VL++ Q+ Sbjct: 124 QSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 183 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +VWG + ++ + +++ LR+K+E+DP+ P + +T G+GYRF+ Sbjct: 184 KVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFI 229 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 313 bits (804), Expect = 2e-84, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 + +L+V+DEQ+I F+ L G +V AE L + + DL +LD+ +P +G Sbjct: 6 STILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGY 65 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R+LR + PV+ LSAR E DK+ L+ GADDYL+KPFG+ EL AR+R LRR Sbjct: 66 ELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQM 125 Query: 122 TTAP--DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 P + +T+D A + + LTP EF LL+ L+ AGKV ++ LL + Sbjct: 126 DAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLRE 185 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + ++ LR KL P T G GYRF Sbjct: 186 AWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRF 229 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 128/235 (54%), Gaps = 12/235 (5%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLE--AATRKPDLIILDLGLPD 57 M+ +L++ED+ + + L + V A T Q GL A R DLIILDL LPD Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 58 GDGIEFIRDLR-----QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARL 112 DG++ + +R Q + VP+++L+A+ + +D++ L+ GADDY+SKPF EL AR+ Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 113 RVALRRHSATTA---PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 R LRRH + F ++V + + ++ V LT +F+LL +AGK Sbjct: 121 RAVLRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGK 180 Query: 170 VLTQRQLLNQVWGPNAVEH-SHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VL + QL + ++ ++ + +++ LR +E +P +P+ IT G+GY+F Sbjct: 181 VLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 6/230 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIV+DE ++ +R+ E +G V E + + L+ DL+ILD+GLP DG Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +R +R PVI+L+AR++E D++ L+ GADDY+ KPF EL AR+R LRR Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 120 SATTAPDPLV-----KFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + + + S + +D A R + ++ L P EF LLA L ++ G+V T+ Sbjct: 121 AEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTRE 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 LL QVWG + + + +++ LR KL + A TE GIGYRF+ Sbjct: 181 VLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFI 230 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M NVLIVEDE+ ++ + + G F A+ L+ + DL+ILD+ +P DG Sbjct: 20 MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDG 79 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + R+ S +P+I+L+A+ E DK+ + GADDY++KPF L A+ LRR S Sbjct: 80 FSVCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSS 139 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 AP + + V ++ + +E+ LT E+ LL L+ N G++ + QLLN++ Sbjct: 140 --PAPLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRI 197 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WG + + + ++ LRQKL + +H +T GY+F + Sbjct: 198 WGYDFEGTTRTVDTHIKTLRQKLGDEG---KHIVTLIRSGYKFEV 239 >UniRef50_C7RUD8 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=C7RUD8_9PROT Length = 235 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 134/221 (60%), Positives = 172/221 (77%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +++VEDE IRRF++ ALE +G +VFEA++++RGL+EA TR+ DL++LDLGLPDGDGI+F Sbjct: 8 IVVVEDEANIRRFIKLALESEGFQVFEADSVKRGLIEAGTRRADLVVLDLGLPDGDGIDF 67 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 IRDLR WS +PV+VLSAR+ E DK+AALDAGADDYL+KPFG EL AR+R LRR S + Sbjct: 68 IRDLRAWSEIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRSRSA 127 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 L +F + VDLA R + R +HLTPIE+RLL+ L+ N VLT RQLL VWGP Sbjct: 128 GGTALAEFGSIRVDLARRTVERDGAPLHLTPIEYRLLSYLIANPDCVLTHRQLLKNVWGP 187 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VE SHY+R+YMG+LR+K+E DPARP+H TE G+GYRF+ Sbjct: 188 GHVEDSHYVRVYMGNLRKKIEDDPARPKHLRTEAGVGYRFV 228 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 5/229 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +LI +D + + T L+ D M A + L + KPDL+ILDL +P G Sbjct: 4 IKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E +++R+ S VP+I+L+A+ EE D+I L+ GADDY+ KPF E+ R++ RR Sbjct: 64 TEVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVG 123 Query: 121 ATTAPDP----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 LV F++ +DL I +E++ +TP E ++L +L N G+VL++ ++ Sbjct: 124 NANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEI 183 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 L++VWG + + + + +R+K+ ++ + T GIGY+F + Sbjct: 184 LDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEK-WSIKTVYGIGYKFEV 231 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +LIV+DE +R +R L G + EA + L E LIILD+ +P+ DG Sbjct: 3 TKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGW 62 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E ++R+ + A+P+++L+AR+E +DK+ LD GADDYL+KPF EL AR+ LRR Sbjct: 63 EVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAV 122 Query: 121 -ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 T + F ++ +D+ + + VHLTP EF LL +LL N +V + QLL + Sbjct: 123 VNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLK 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +WG + + + ++ +R KL+++ T G+GY+ Sbjct: 183 IWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 312 bits (800), Expect = 9e-84, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK-PDLIILDLGLPDGD 59 M VL++EDE+ +R L+T LE +G +V AE + GL K +I+LD+ LPD Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G ++ +R+ S VPV++++AR EE DK+ + GADDY+ KPF E+ AR++ L R Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + ++ + +D+ +R + +++ LTP EF LL +LL+N GKV+++ + LN+ Sbjct: 122 YGSQDDGKT-EYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNE 180 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VWG + + ++ LR+KL + + T GIGY+ Sbjct: 181 VWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLE 222 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 312 bits (800), Expect = 9e-84, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LI+ED+ + R L+ E +G V A GL A +P LI+LDL LP +G E Sbjct: 6 TILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYE 65 Query: 63 FIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R LR+ +P+I+L+A+ +ESD + L GADDY++KPF I EL AR+ LRR Sbjct: 66 ICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRK 125 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T + F D D AR + R ++V L+P EF LL L+ NAG+ L++ ++++ VW Sbjct: 126 QT--GTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVW 183 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G ++ + ++ LR K+E DPA PR T GY+F L Sbjct: 184 GYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFEL 227 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 10/232 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T +L+ +D IR LR L G+G V EA+ L + DLI+LD+ +P+ +G Sbjct: 3 TRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMNGY 61 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LR+ S VP++ L+A+ +SDK +GADDYL+KPF EL AR++ LRR+ Sbjct: 62 QTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQV 121 Query: 122 TTAPDPL--------VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 + +T+ A + +EV LT IEF +L+ L+ N ++ + Sbjct: 122 YKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSA 181 Query: 174 RQLLNQVWGPNAVEH-SHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 QL + W ++ + +++ +LR+K+E+DPA P + T G GYRF Sbjct: 182 EQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LI++DEQ I L L+ + V++ + + DL ILD+ LPD +G Sbjct: 21 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R+ P+I+L+A+ EE+DKI L GADDY++KPF E+ AR++ LRR+ Sbjct: 81 LCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKKY 140 Query: 123 TAP------DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + + ++ + +++ E V LTP EF +L VLL++AG V++ +L Sbjct: 141 SPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEEL 200 Query: 177 LNQVWGPNAVE-HSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 + VW +S + +++ HLR+KL P++ T G+GY+ Sbjct: 201 FHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYK 247 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 3/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 + +V+DE I +++ LE G V+ A + PDLIILDL LPD G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LR+ S VP+I+L+ +++E D + LD GADDY++KPF +L AR++ LRR Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 129 Query: 122 TTAPDP---LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + +D+ ++ + + V+LTPIE+ +L ++ GK+ T+ +L+ Sbjct: 130 ELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREELII 189 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G N + + ++ +LR K+E +P P + +T GIGY+F Sbjct: 190 VTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 3/227 (1%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M N +L+VED++ + + LR LE +G V A + L LIILDL LP Sbjct: 1 MNNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMS 60 Query: 60 GIEFIRDLRQWSAV-PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 G+E + LR + V P+I+L+AR ++DK+ L GADDYLSKPF I EL AR+ LRR Sbjct: 61 GLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRR 120 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + P V D+ +D + + +++ L+ EF++L L +AG+ + + ++ Sbjct: 121 TH-QSKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQ 179 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +VWG + + + ++ LR KLE +P PR+ +T G GYRF++ Sbjct: 180 EVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVV 226 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 16/235 (6%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +LI +D+Q IR LR LE +G RV EA L DL++LD+ +P DG + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +R +R+ SA+PVI++SA+ ++ DKI LD GADDYL+KPF E AR+R LRR Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 124 AP--------------DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGK 169 A ++ D+T+DL A V+HRG+E + LTP+EFR+L++ +++ G+ Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPGR 190 Query: 170 VLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 V T++Q+ + WG V + + + + LR KL DP + T G+GYR Sbjct: 191 VFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRME 243 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 5/227 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DEQ I L L+ + + A L D+I+LD+ LPD DG Sbjct: 18 KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGF 77 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R +R ++ P++ ++ARS + DK+ L G DDY++KPF E+ AR+ V LRR Sbjct: 78 ELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQHM 137 Query: 122 TTAPDP----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 T P+ + F ++ + +I E VH T E LL L + ++ T QL Sbjct: 138 TQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAEQLY 197 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 QVWG ++ + +++ LR+K+E++P P + + GIGY+F+ Sbjct: 198 EQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFI 244 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 ++L++EDE + RF+ T L +G RV A GL A + PDL++LD LP G+ Sbjct: 9 AHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGL 68 Query: 62 EFIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R LR VPV++++AR E SD+ A LDAGADDY+ KPF I EL +R+R+ LR Sbjct: 69 EICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR--Q 126 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + D + F D+ +D R + RGE +V LT E+ LL L+ + +VLT++Q+L V Sbjct: 127 PRRSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHV 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + S+ + +Y+ +LR K+E P R T G+GY Sbjct: 187 WGCDFTGDSNIIEVYIRYLRLKIE-GPGEKRLIQTVRGVGYVL 228 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+DE I F++ E G V A + + D+I+LD+ +P+ DG + Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNIDGFQ 62 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R + P+I LSAR E DKI L G DDY+ KPF I EL+AR++ LRR Sbjct: 63 VCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKRI 122 Query: 123 T-APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + F +T+D+ +R +H EEE+ T EF ++ +L + +V ++ Q+ +VW Sbjct: 123 PLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKVW 182 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G +A ++ + ++ +R K + A H T G+GYR+ + Sbjct: 183 GYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEI 226 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VED+ +I L L +G RV AE +RGL A DLII+D+ LP +G E Sbjct: 18 TVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGFE 77 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R LR + +PVI+LSAR E DK+ L+ GA+DY++KPF + EL AR++ LRR + Sbjct: 78 LLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAI 137 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 A ++ D+ ++ A R + RG+ + LT EF +L L G+VL++ Q+ +VW Sbjct: 138 ARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVW 197 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 GP + ++ LR KLE++ PRH +T G+GYRF+ Sbjct: 198 GPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFV 240 >UniRef50_A6LQJ3 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridium RepID=A6LQJ3_CLOB8 Length = 231 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 1/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 N+LIVEDE+ IR + + + V+EA + L K DLI+LD+ +P+ DGI Sbjct: 2 NILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIMMPNVDGIS 61 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 I+ +R S +P+I ++A +SDK+ AL GADDYL KP EL AR+ LRR Sbjct: 62 VIQKVRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYKY 121 Query: 123 TAPDPLV-KFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 ++ ++ + +++G ++ L P EF++L +L++N GKV T++Q+ +VW Sbjct: 122 AEHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEEVW 181 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 S+ + +++ H+R+K+E DP P + T GIGY+ Sbjct: 182 EEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYKIE 224 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 1 MTN-VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M +L+VEDE IR + LE +G + EAE + + PDLI+LD LP G Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 60 GIEFIRDLRQWS---AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 GI+FI+ L++ S +PV++L+AR EE D++ L+ GADDY++KPF EL AR++ + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 117 RRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 RR S + +++ +++D + + GEE + + P EF+LL + + +V ++ QL Sbjct: 121 RRISPMAVEE-VIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LN VWG N + +++ LR+ LE R T G GYRF Sbjct: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL+V+DE +R LR L +G V EA L AA D+I+LDL LPD DG + Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + +R+ V +++L+ARSE DK+ L GADDYL+KPF EL AR+ +RR + T Sbjct: 76 CKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAITQ 135 Query: 124 A---PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + + ++F + + R + + V T EF L L + + ++ +L+N + Sbjct: 136 SIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNLI 195 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + ++ ++R+K ++ T G+GY+F Sbjct: 196 WGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKF 238 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 5/228 (2%) Query: 1 MTN---VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPD 57 M +L+ +DE+ I L LE G V + L P LIILDL LPD Sbjct: 1 MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPD 60 Query: 58 GDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 G E +R SAVP+++L+A+ + D++ L GADDY++KPF E+ AR++ LR Sbjct: 61 IPGEEVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILR 120 Query: 118 RHSATTAPDPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 R +++ D+ +D ++V+++G LT E++LL +L + +V ++ + Sbjct: 121 RTMLDHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREE 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L+ +V+G + + ++ +LR K+E DP P + T G+GYRF Sbjct: 181 LIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRF 228 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 8/229 (3%) Query: 1 MTN----VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLP 56 M + VLI+ED+ I ++ +E G A + GL PD I LD+ LP Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 57 DGDGIEFIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 DG E +++R +P+I+L+ + E DKI LD GADDY+ KPF EL AR++ Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120 Query: 116 LRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 +RR D +V + VD G++E+ + P E LL L + +V T++Q Sbjct: 121 MRRADLLNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQ 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKL-EQDPARPRHFITETGIGYRF 223 LL+Q+WG + +++ +R+KL E D T G+GY+F Sbjct: 181 LLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAK--WTIKTIRGVGYKF 227 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 8/230 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M + ++ED++ I L + +G V + KPD+++LDL +P+ DG Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60 Query: 61 IEFIRDLRQWSA---VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 +EF + +R +P+I+L+A+S E DKI L+ GADDY++KPF EL AR++ LR Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 118 RHSA--TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 R + P KF D+ + + + VHLT +F+LL L+N+ GKVL++ Sbjct: 121 RSKSLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDY 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 ++ VW + + + +++ LR+ L++ T G+GY++ Sbjct: 181 IIEHVWAWDKDVYDRTIDVHIKKLRELLKEYGN---CIKTIRGVGYKWEC 227 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 95/225 (42%), Positives = 138/225 (61%), Gaps = 3/225 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+++D++++R + LE +G R +A + G +A T KPDL+++DL LP G Sbjct: 12 MQTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSG 71 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 E + LR A P+IVLSA +E DK+ L+ GADDY+ KPFG EL AR+R LRR Sbjct: 72 TEICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRA 131 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 S T ++ FS+V VD RV+ R E++ LTP E+ LL L+N + LT+ +LN Sbjct: 132 S--TDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNS 189 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VWG ++ + ++ LRQKLE DP P+HF+T G+GYRF+ Sbjct: 190 VWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFI 234 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 ++LI +D++ + L + + + V+ A L PD+++LD+ +P DG Sbjct: 4 NSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGF 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E R RQ++ +P+I LSA+ +E+D++ L GADDY+ KPF + EL AR++ LRR Sbjct: 64 EVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRG 123 Query: 122 TTAPD-PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + D+ +D + R + + LTP EF LL +L + +V ++ QLL + Sbjct: 124 EVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLLEKA 183 Query: 181 WGPNAV-EHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + ++ +LR+KLE DP++P + +T G+GY+F Sbjct: 184 MGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKF 227 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 128/220 (58%), Gaps = 4/220 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VL++EDE+ I RF+ L +G A GL + PDL+ILDL LP DG+E Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 R +R+ S P+I+L+A+ DK+ LD+GADDYL KPF I EL AR+R LRR + Sbjct: 67 ARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPAV 126 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 + V+ +D+ ++L R I RG V L+ EF LL +L N GKV ++ ++ +VW P Sbjct: 127 TGE--VRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-P 183 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 S+ + +Y+G+LR+KLE+ R R T G+GY Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGER-RLIHTVRGVGYVL 222 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 12/233 (5%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 N+L+VEDE+ I + L G VF+ GL ++ L I+D+ +P DGI Sbjct: 5 NILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGIT 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 LR+ PVI+LSA+SEE DKI L+ GADDY++KPF EL AR+ LRR+ Sbjct: 65 LTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124 Query: 120 --------SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVL 171 + D + + ++ + ++ + + TPIEF++L++L+ NAG+V Sbjct: 125 LNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGRVF 184 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + ++ +VW NA+ ++ + +++ ++R+K+E DP P++ G+GY+ Sbjct: 185 SADEIYERVWNENAI-NTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 236 >UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synechococcus RepID=B1XLL2_SYNP2 Length = 249 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LI++D+ AI + LE G V AE +G A +PDL++LDL LP DG Sbjct: 1 MPRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDG 60 Query: 61 IEFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 + +R+ + +P+++L+A + DK+ +AGADDYL+KPF + E+ R+R LR Sbjct: 61 FTVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLR 120 Query: 118 RHSATTAPD---PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 R ++ + +T+ ++ + LT +EF LL LL G+ ++ Sbjct: 121 RSDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPS 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 ++L +VWG + + +R+++ HLR KLE +P RP++ T G GY L Sbjct: 181 EILKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLEL 231 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT---RKPDLIILDLGLPD 57 MT +L+V+DE IR LR LE +G V EA L E DL++LD+ +P Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPG 60 Query: 58 GDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 DG+E +R LR + VI+++ARSEE DK+ L GADDY++KPF E+ AR++ LR Sbjct: 61 MDGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLR 120 Query: 118 RHS-ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 R TT DP ++F ++TVD R I V LT +EF LL L+ G+V ++ QL Sbjct: 121 RRRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 L QVWG + + +++ +LR +L D P T G+GY+F+ Sbjct: 181 LEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFI 228 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L++ED+ I +++ L + V + T + GL + DLIILD+ LP+ DG Sbjct: 4 KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +++R S VP+++LSA+ +E DK+ L GADDY++KPF + EL+AR+ ++R+ Sbjct: 64 VCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKGY 123 Query: 123 TAPDPLVKF----SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + +T+ + ++E+ LT EF LL VL N KV T+++L Sbjct: 124 NKKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKKELYE 183 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VW + +E ++ + +++ LRQKL+ + P++ T G GY+F+ Sbjct: 184 NVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFI 229 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 10/222 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +LIVEDEQ + RFL L + V Q GL +A + DLIILDL LP +G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E R +RQ + P+I+++A+S+ DK+A LD GADDY+ KPF I EL AR+R LRR Sbjct: 61 LEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-- 118 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ++ + + + E+ LT E+ LL +L N V+ + Q+LN V Sbjct: 119 --QPQKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHV 171 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 WG N+ ++ + +Y+ +LR KL+ R + T G+GY Sbjct: 172 WGYNSEVETNVVDVYIRYLRNKLKPY-DRDKMIETVRGVGYV 212 >UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X641_OXAFO Length = 231 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 126/222 (56%), Positives = 169/222 (76%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L VEDE IRRF++ ALE + VFEA+ ++RGL+EAATR+PDL++LDLGLPDGDG+E Sbjct: 6 RILTVEDESNIRRFVKLALENENYEVFEADGVKRGLIEAATRRPDLVVLDLGLPDGDGLE 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 FI DLR WS++P+IVLSARS E+DKI+ALDAGADDYL KPFG GEL AR+R LRR Sbjct: 66 FITDLRAWSSIPIIVLSARSNENDKISALDAGADDYLVKPFGAGELLARVRAQLRRQQPG 125 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 T +P ++FSDV +D RV+ + +HLTPIE+R+L + + +V+T +QLL +WG Sbjct: 126 TPNEPFIRFSDVCIDPVRRVVEKNGAPIHLTPIEYRILIFMTSQPDRVITHQQLLKAIWG 185 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 P E HY+R++M +LR+K+E++ + PRH ITE GIGYRF+ Sbjct: 186 PGHTEDMHYIRVHMANLRKKIEENASMPRHLITEAGIGYRFV 227 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 10/231 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LIVEDE+ ++R L L +G A+ + + ++ + DL ++D+ +P DG Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +F++ LR+ S +PVI L+ARS+E D+I L G DDYLSKPF GEL AR++ LRR Sbjct: 61 FDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 121 ATT-------APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 ++ + ++ AR + + + LT EF LL L + G+V T+ Sbjct: 121 QRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTR 180 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 LL VWG + + ++ LR KL+ T GIGY+ + Sbjct: 181 EHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYGN---VIQTVWGIGYKLV 228 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPD--LIILDLGLPDGDG 60 +LIV+D++ I + L +G A + + + PD L+ILDL +P+ +G Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKL-NTMPDISLVILDLMMPEMNG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 ++ IR +R+ S++P++VLSA++ + DKI L GADDY++KPF E+ AR++ LRR Sbjct: 61 MDVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 120 Query: 121 AT--TAPDPLVKFSDVTVDLAARVI-HRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 ++ + ++ + + + + LT +EF +L +L ++ +V + + Sbjct: 121 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDIF 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +VW +V + + +++ HLR K+E + T G+GY+ Sbjct: 181 ERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYK 225 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+DE IR LR ALE V EA Q+ +KPDLI+LD LP GI Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 62 EFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 E R L++ S +P+I+L+A+ EE +K+ L+ GADDY++KPF EL ARL+ LRR Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + +P ++ + +D + + + V + P E+RLL L + +V T+ QLL+ Sbjct: 124 TDSMGISEP-IQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLD 182 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG N + +++ LR+ L + R T G GYRF Sbjct: 183 HVWGGNVYVEERTVDVHIRRLRKALSLEG-HDRFIQTVRGAGYRF 226 >UniRef50_P21866 KDP operon transcriptional regulatory protein kdpE n=92 Tax=Bacteria RepID=KDPE_ECOLI Length = 225 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 225/225 (100%), Positives = 225/225 (100%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS Sbjct: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV Sbjct: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML Sbjct: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 7/227 (3%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M ++++EDE I L L+ G F A ++GL + +PDL++LDL LP Sbjct: 1 MAHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMS 60 Query: 60 GIEFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 G + + ++ + + +P+I+L+AR +E D+I + GADDY+ KPF EL R++ L Sbjct: 61 GTDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVL 120 Query: 117 RRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 RR+ + + D A + + HLTP EF L + N GKVL++ QL Sbjct: 121 RRNVNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQL 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L+ WG +S + ++ LR+KL T GIGYR Sbjct: 181 LSNAWGYEFEGYSRTVDTHVRRLRKKLGPYAD---WLETVRGIGYRM 224 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +LI++D++ + ++ +++ + + T + GL + ++ L++LD+ +P DG Sbjct: 18 MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + ++R+ ++P+++ +++++ K+ L AGADDYL+KPF + EL AR+ +RR++ Sbjct: 78 FETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYT 137 Query: 121 ATTAPDPLVK---FSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 ++ F + +DL R L P EF LL + GK+LT++Q+ Sbjct: 138 RFNQQAGAIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIY 197 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +VWG + + LR+KLE +P+ P++ T GIGYRF Sbjct: 198 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRF 243 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+D+ I ++TA E + V A + + PDLI+LD+ LPD G++ Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 63 FIRDL-RQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 I+ L R++ +PVI L+AR + D I L+ GADDY++KPF L AR++ RR+ Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 +VK D+ +D+ + + + ++ L EF LL +++ N GKV ++++L++VW Sbjct: 122 GPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRVW 181 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 G + + +++ LR+K+ T G+GY+ ++ Sbjct: 182 GMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKLVI 220 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 6/228 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+D+ +R L L G +V ++ L++LDL LP DG+ Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 63 FIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 R LR S +P+I+++A+ EE D+I L+ GADDY+ KPF EL AR+R LRR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 ---SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 A + + ++ F ++L R + R +E + LT EF +L L+++ + L++ +L Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +N G + + + LR+ +E+DPA PR+ T G+GY F+ Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFV 233 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK-PDLIILDLGLPDGDG 60 +L+VEDE + + L+ +G R A + L E A PD I+LDL LPD G Sbjct: 11 KTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISG 70 Query: 61 IEFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 E + LR+ VPVI+++A+ E D++ + GADDY+ KPF + EL R+R LR Sbjct: 71 TEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLR 130 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R ++ F + VD + E+E+ LT +EFRLL ++ G+V T+ LL Sbjct: 131 RTERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDALL 190 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + VWG A + + ++ LR+KL R+ T G+GYRF Sbjct: 191 SDVWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRF 233 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+ ED+ + L L+ +G V + L EA + DLI+LD+ LP G Sbjct: 3 PRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGF 62 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + + LR+ VP+++L+AR E DK+ L +GADDYL+KPF + EL AR+ LRR Sbjct: 63 DVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAP 122 Query: 121 -ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + + VD + R + V L+ E+RLL L+++ G+ +T+ LL Q Sbjct: 123 VRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQ 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG +A + + +++ LRQKLE++P PR+ T G+GY+ Sbjct: 183 VWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +V+++EDE I LR L +GMRV A + L + DL+ILDL LPD DG+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 63 FIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R LR WS +P+I+L+AR E +++ L GADDY+ KPF EL AR+ RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRA-G 136 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + P +++ + ++++L R + + LTP EF LL + + +V T++ LL++VW Sbjct: 137 ISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVW 196 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G V S+ + +++ +LR+K+ + T G+GY Sbjct: 197 GFTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGYTL 236 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLIV+D+ +R L LEG G V + + + E T P ++ILD+ +P DG+E Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +RDLR S VPVI+L+A+ E++D+I L+ GADDY+SKPF EL AR++ LRR Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGPE 126 Query: 124 APDP---LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +P + + V + +A + + + + L+ EF+LL L++N G+ +T+ L+ V Sbjct: 127 NNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMTSV 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG + + +++ LR + P T G GY F+ Sbjct: 187 WGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFV 230 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M V IVEDE I L+ LE G RV A+ + GL + PD +ILDL LPD Sbjct: 1 MAITVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMP 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 G E + +R S VP+++LSA+S E D+I + GADDY++KPF E+ RL LRR Sbjct: 61 GEEICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRT 120 Query: 120 SATTAPDPLVKFS--DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 T + F+ ++ +D + + E + LTPIEF ++ ++ + G+V ++ LL Sbjct: 121 R-TLNKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLL 179 Query: 178 NQVWGPNAV-EHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 ++ + + + +++ +LR+KLE + +P++ +T G+GY+F Sbjct: 180 QKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VL+V+DE I +R AL G V A T Q L AA +PDL+ILD+ LPD DG Sbjct: 21 PRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGF 80 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E R LR V V+ L+AR DKI L G DDY++KPF + EL AR+R LRR Sbjct: 81 EVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTR 140 Query: 121 ATTAPDP----LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 L+ ++DV +D A ++ R ++ V L+P EF LL L+N +VL++ Q+ Sbjct: 141 RPAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQI 200 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 L VW + + Y+ +LR+KL Q P T+ G GY Sbjct: 201 LAAVWDRDFDGEPTVVDQYVSYLRRKLGQHG--PPLIHTQRGFGYAL 245 >UniRef50_D1BL25 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BL25_VEIPT Length = 229 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++LI+ED+ I R L G V G+ A DLIILD+ LP+ DG E Sbjct: 4 HILIIEDDLDIANIERDYLMVAGYDVTIMTNGTDGIEAALNTPVDLIILDVMLPEMDGFE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL----RR 118 R +R VP+++++AR ++ DKI L GADDY+ KPF L A+++ L R Sbjct: 64 VCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKRL 123 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 ++ ++ +D + E+EVHL EF+LL L+ N V ++ +L + Sbjct: 124 TERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELYS 183 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +VWG ++ + +++ LR+++E +P+ +H IT G+GY+F+ Sbjct: 184 RVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYKFV 229 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VEDEQ + + + L RVF A +L + ++ DL++LD LPDGDG+ Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 64 IRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + LR +PV++L+AR E+D + L++GADDY++KPF + EL+AR + LRRH + Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 L++F + +DL +R + + + LT EF LL L + +V ++ QLL+ VWG Sbjct: 143 APTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 H + ++ LR KL P T G+GY+F L Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFTL 245 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+ +D+ AI R + AL G ++ L + L+++D+ +P DG Sbjct: 20 KILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGFT 79 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R S VP+I+++AR D + + GADDY++KPF ELQAR+ +RR Sbjct: 80 VTERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEGY 139 Query: 123 T--APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P+V+ D+ +D + E+V+LTP+EF LL L N+G+V + L +V Sbjct: 140 QHRKASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFREV 199 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG V ++ + + + LR+K+E+ P++PR +T G+GY+ Sbjct: 200 WGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKL 242 >UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteobacteria RepID=A8HY28_AZOC5 Length = 228 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 111/222 (50%), Positives = 145/222 (65%), Gaps = 1/222 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+DE AI RFL AL G V A+ L AT PD ++LDLGLPD DG E Sbjct: 5 RILVVDDEPAIHRFLSPALTAAGYGVARADDAAGALRAIATHPPDAVLLDLGLPDMDGKE 64 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR-RHSA 121 I +RQ+S VP+IVLSAR E++KI ALD GADD+++KPFG+GEL AR+R ALR R Sbjct: 65 VIGRVRQFSQVPIIVLSARDREAEKIEALDLGADDFVNKPFGVGELMARIRAALRQRGGD 124 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T A D ++K + +D + R +E+ LTP EF LL L + G+VLT RQ+L VW Sbjct: 125 THAADVVLKVGPLEIDRPRHRVTRDGQEIKLTPKEFELLVYLARHPGRVLTHRQILGAVW 184 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 GP ++ + YLR+Y+G LRQ+LE +PA P +TE GIGYR Sbjct: 185 GPAHLDDTQYLRVYVGQLRQRLEVEPATPTLILTEPGIGYRM 226 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 2/224 (0%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LIV+D++ I FL+ L +G V + + L + K DLI++D+ +P DG E Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDGFE 63 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR--HS 120 I+ +R+ + +P+I L+A+ + DKI +G DDY++KPF + EL R+ L+R Sbjct: 64 AIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVSTG 123 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + L+K D+ ++L +++GE+E+ LTP EF +L +L N G+V +L +V Sbjct: 124 VVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELYERV 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG +E+ + L ++ +LR+KL ++ T G+GY+ Sbjct: 184 WGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIE 227 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MT--NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M +L+ ED++ I + LE +G V A + + DLII+DL +P Sbjct: 1 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRL 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 G E I+ LR S VP+I+LSA+SE+ DK+ L+ GADDY++KPF EL AR+ LRR Sbjct: 61 SGEEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRR 120 Query: 119 HSATT--APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + + A +++ ++ ++ + ++ ++LT +E+++L L+ N KV + + Sbjct: 121 YHSYDNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESI 180 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 VW A+ + + +++ +R+K+E DP RP + G+GY+F+ Sbjct: 181 YEHVWNEPAI-EAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFV 227 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 114/225 (50%), Gaps = 10/225 (4%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M ++LIVEDE AI ++ L+ G + + E R DLIILD+ LP DG Sbjct: 1 MASILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E I Q + P I LSA++ D+I GADDYL+KPF + EL AR+ LRR Sbjct: 61 FEVIE---QANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQ 117 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T + +V +D ++ + + V TP E+ LL VL+NN L++ +LL V Sbjct: 118 RTA---SCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELV 174 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WG + + + +++ LR+KLE + T +GYR + Sbjct: 175 WGYDFEGDTRTVDVHIQKLRKKLEWEDR----IKTVYKLGYRLEV 215 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 127/231 (54%), Gaps = 10/231 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 ++++V+DE +IR L +L G V A + + +PDLI+LD+ LPD DG Sbjct: 12 ASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGF 71 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 R +RQ A PV+ L+AR + DK+ L G DDY++KPF + E+ AR+R LRR Sbjct: 72 TVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 131 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 DP+++ D+ ++ + + R + + L+P E++LL L++N G+VL++ Q+L+ V Sbjct: 132 EQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 191 Query: 181 WGPNAVEHSHYLRIYMGHLRQKL------EQDPARPR---HFITETGIGYR 222 W + + + Y+ +LR+K+ + D + T+ GIGY Sbjct: 192 WQYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYM 242 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 9/232 (3%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+V+D+ +IR + ++ +G V +A+ L + DL+ILD+ + +G Sbjct: 3 KTILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYNGF 62 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E +R ++P+I+LSA+ + DK GADDY++KPF EL R LR S Sbjct: 63 EVCSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRNRS 122 Query: 121 ATTAPDP--------LVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 A ++ D+++D+ R + G + LT E+ +L ++ V T Sbjct: 123 PQEAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVFT 182 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 ++Q+L+ VWG V S + +++ LR+K+E DP+RP H ITE G+GYR + Sbjct: 183 RQQILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRIV 234 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 11/230 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+VED + L L G +V+ A + L +PDL+ILD LP DG+ Sbjct: 6 PTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGL 65 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E +R +RQ + PV++L+ARSEE+D + L+ GADDYL+KPFG+ EL AR+R LRR Sbjct: 66 EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQR 125 Query: 122 --------TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQ 173 ++++ D+ +D ++ ++E+ LTP EF +L +LL N G+ ++ Sbjct: 126 IQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSR 185 Query: 174 RQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 LL+ +WG + V + M LR+KL T G+GYR Sbjct: 186 NYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRL 232 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 125/231 (54%), Gaps = 10/231 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 ++++V+DE +IR L +L G V A + + P+LI++D+ LPD DG Sbjct: 7 ASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGF 66 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 R +RQ VPV+ L+AR + DKI L G DDY++KPF + E+ AR+R LRR Sbjct: 67 TVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 ++K +D+ ++ + + R + L+P E++LL L++N G+VL++ Q+LN V Sbjct: 127 EPDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHV 186 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLE-----QDPARPR----HFITETGIGYR 222 W + + + Y+ +LR+K++ D + + T+ GIGY Sbjct: 187 WQYDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYM 237 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+V+DE+ I L+ L + + A + L K DL+++D+ +P DG Sbjct: 1 MDRILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH- 119 ++ +++R+ +P+I LSA+ E DKI L GADDY++KPF E+ AR++ LRR Sbjct: 61 VKATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFK 120 Query: 120 --SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + + +T++ + ++++ +E+ LTP+E+ +L + N K+LT + + Sbjct: 121 ELGSQQKDQEVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQDIY 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +VW + + +++ HLR+K+E DP+ PR+ G GY+ Sbjct: 181 QEVWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYK 225 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 T VLI++D++ + L L G V A + GL PDL+ILD+ LPD DG+ Sbjct: 16 TRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGL 75 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R++R S +P+I+L+AR + +D+I L+ GADDYL KPF EL AR++ LRR Sbjct: 76 AVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR--G 133 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T ++ + V+ R + + E+ LT EF LL L N G+V+++ ++L+ Sbjct: 134 TRDDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTR 193 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 G + + + I + LRQKL DP RP T G+GY F+ Sbjct: 194 GIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFI 236 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 121/232 (52%), Gaps = 8/232 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M N+L+V+DEQ + +R LE G +V A+ L A +R PDLI+LDL +P DG Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 61 IEFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 R L+ +P+I+LSARS+E DK+ L+ GADDY++KPF EL AR+ LR Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 118 RHSATT-----APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 R ++ + +D I G ++ +L EF LL L GK + Sbjct: 121 RDKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFS 180 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + LL Q W + S + +++ +RQKLE A ++ T G+GYRF+ Sbjct: 181 RYFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFI 232 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +LIV+DE IR + ALE G EAE Q+ RKPDLI+LD LP GI Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 62 EFIRDLRQ---WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 E R L++ +P+I+L+A+ EE +KI L+ GADDY++KPF EL ARL+ LRR Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + P ++ + +D + + + + P E+RLL + + + T+ QLL+ Sbjct: 124 TGPGDSEAP-IEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLD 182 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 QVWG N + +++ LR+ L + T G GYRF Sbjct: 183 QVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRF 225 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 + ++ED+ I R ++ L+ G + T L +A + P L +LD+ +P GDG++ Sbjct: 4 TIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDGLD 63 Query: 63 FIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 R LR S++P+I ++AR+ E+D++ L+ GADDY++KPF EL AR++ LRR Sbjct: 64 VCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRRF 123 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + P L+ F DV +D +A + E T EFRLL L + G+V ++ LL+ Sbjct: 124 ERPSTPS-LISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLLDA 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWG + +Y+ +R+K+E DP PR T G GYRF + Sbjct: 183 VWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFEI 228 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 4/223 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VEDE I RF+ ALE +G V LL D +LD+ LP DGI Sbjct: 47 RVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGIS 106 Query: 63 FIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 +R LR+ ++P+++LSARSE DKI L++GADDYL KPF + EL ARLR +RR + Sbjct: 107 VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTAG 166 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 + K ++T++L R + RG++++ LT EF +L +L+ G+V T+ Q+ +VW Sbjct: 167 IGLS--VYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVW 224 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + ++ + +Y+ LR+K+ + + T G+GY+ Sbjct: 225 NYHFDPGTNLVDVYIQKLRKKI-DEGEEQKLIQTVRGVGYKIE 266 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 3/225 (1%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M +L+V+D+ A+ L +G V AE L +PDL++LD+ +P Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL--R 117 G E ++ +R+ S VPVI+L+A+S+ DK+ L+ GADDY++KPF EL AR++ L Sbjct: 61 GFEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRL 120 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 D +++ + +D A + R E + LTP EF++LA+LL G+ T+ Q+ Sbjct: 121 GRREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQIS 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 V + S Y+ +++ LR K+E+DP+RP T +GYR Sbjct: 181 EAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 82/219 (37%), Positives = 129/219 (58%), Gaps = 3/219 (1%) Query: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 L+VEDE + R+L+ LE +G GL +A T + DLI+LD+ LP+ GIE Sbjct: 14 LLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIELC 73 Query: 65 RDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTA 124 R +R+ VP+I+++AR E D + LD+GA+DYL+KPF I EL AR+RV LR + Sbjct: 74 RRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLR--QRESK 131 Query: 125 PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPN 184 + + + + AR + EEE+ LTP EF LL ++ N + +++ Q+L VWG + Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191 Query: 185 AVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +++ + +Y+ +LR K+E DP+ + T GIGY Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSV-KLIHTVRGIGYTL 229 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 118/229 (51%), Gaps = 5/229 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+VED++ I + ++ LE +G V K DL++LDL LP DG Sbjct: 4 KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGY 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + + +R+ S P+I+L+A+ + +K+ L GADDY++KPF I EL AR+ LRR Sbjct: 64 QVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123 Query: 122 TTA-----PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 +++ ++ D+ A +I+ E+ +++ E +LL L+ +V + +L Sbjct: 124 DHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREEL 183 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 + +WG + + +Y+ LR++L+ + T GIGY+F + Sbjct: 184 IEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEV 232 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+VEDE I L L +G V A DLI+LD+ LP DG Sbjct: 1 MIRILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 +E R+LR+ P+++L+A++ E++K+ L+ GADDY++KPFG EL+AR++ LRR Sbjct: 61 LEVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRA 120 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 S T + F DV VD A + + V LTPIEF+LL V + G+VL++ QL+ Sbjct: 121 SGDTDLETC-SFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAA 179 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + + ++ +LR+K+ DPA PR+ G+GYRF Sbjct: 180 TWGRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRF 223 >UniRef50_C6PZ92 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ92_9CLOT Length = 235 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 132/226 (58%), Gaps = 5/226 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGI 61 +L+VED++ I + LE +G + +A + + + + LI+LDL +P DG Sbjct: 8 KILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPFVDGF 67 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH-- 119 E IR +RQ S VP++V+SA++ E DKI+A+ GADDY+ KPF + E R++ +RR+ Sbjct: 68 EIIRRVRQKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRYIY 127 Query: 120 --SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 S + + + D+ VD+ A I +G + + +TPIEF +L + L N KV T+ Q+ Sbjct: 128 FNSEQEMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQIY 187 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +WG +A+ + + + +++ LR K+E D P + T G+GY+ Sbjct: 188 DSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKL 233 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+VEDE LR L +G V + +A D I+LDL LP DG E Sbjct: 31 RVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGFE 90 Query: 63 FIRDLRQWSA-VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R LR+ PV++L+AR + D+I LDAGADDYL KPF GEL ARLR +RR Sbjct: 91 VCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR--G 148 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 +++ D+ +D A + R + L+ EF LL +L+ + +VLT+ +++ VW Sbjct: 149 AVERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVW 208 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 S+ + Y+ ++R+K+ P P T G+GYR Sbjct: 209 DFAFDGTSNIVDQYVRYVRRKI-DIPDGPSLIETVRGVGYRL 249 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VLIVED++ I LE G DLI+LDL LP G + Sbjct: 6 RVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSGYD 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 R++R+ +P+++++AR+E DKI L GADDY++KPF EL AR+ LR++ Sbjct: 66 ICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYDRM 125 Query: 123 TAP--------DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + +D+ + + + +++GE E+ EF LL L N V ++ Sbjct: 126 MRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVFSRE 185 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 QL ++WG + V S + +++ +R+K+E D P+ T G GYRF Sbjct: 186 QLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRF 234 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 129/225 (57%), Gaps = 6/225 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPD--LIILDLGLPDGDG 60 +LIV+D++ I L ++ +G +A + + + + T PD L+ILD+ +P+ G Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTN-PDIALMILDIMMPNMSG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 ++ ++++R+ S +P+I++SA++ + DKI L GADDY++KPF E+ AR++ LRR Sbjct: 61 MDVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 120 Query: 121 A--TTAPDPLVKFSDVTVDLAARVI-HRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 T + +++ +T+ + + +++ LT +EF +L +L ++ +V + ++ Sbjct: 121 NEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIF 180 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +VW ++ + + +++ HLR K+E+ + T G+GY+ Sbjct: 181 ERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYK 225 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 125/230 (54%), Gaps = 9/230 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+VED+ IR +R LE + V EAE GL DL+ILD+ +P +G++ Sbjct: 10 KILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLL-DETIDLVILDIMMPKLNGLK 68 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS-- 120 ++R+ S VPV+ L+A+S+ESDK+ L G DDYL+KPF EL R++ LRR+ Sbjct: 69 VCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRRYQVY 128 Query: 121 -----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + +++ + ++ A I +V ++ +E+++L +++ + GK+ + + Sbjct: 129 QGKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIFSTQN 188 Query: 176 LLNQVWGPNAVEH-SHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + VW + + +++ LR K+E DP +P++ T G GYRF Sbjct: 189 IYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFE 238 >UniRef50_Q1IUD6 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IUD6_ACIBL Length = 232 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 93/224 (41%), Positives = 133/224 (59%), Gaps = 1/224 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +L+V+DEQ I R LRT L G + A + PDL+I D+ +P+ DG Sbjct: 2 IARILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDISMPNMDG 61 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + ++LR S VP+IVLS + +E K+ ALD GADDY++KPF I EL AR+R LRR Sbjct: 62 LALCKELRARSQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRRA- 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +++ D +D AA ++ EV LTP EF LL L + GKV+ R LL+ V Sbjct: 121 PVAEIATILELGDFVIDTAAHLVKVRGTEVRLTPKEFDLLLYLARHPGKVVPHRTLLSSV 180 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG + E S YLR+++G LR+K+E + + R+ +TE IGYRF+ Sbjct: 181 WGADHAEQSEYLRVFVGQLRKKIEGENSNKRYILTERWIGYRFI 224 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGM-RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 +LIV+DE AI + ++ L +G V A + + L LI+LD+ +P G Sbjct: 4 ATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQTG 63 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + ++R+ + P+ L+A++ + DK++ GADDY++KPF EL AR++ L+R Sbjct: 64 FDVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTY 123 Query: 121 -----ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 A + ++ + E V + +LL ++ +VL++ Q Sbjct: 124 IHKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKDQ 183 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + +VWG + S+ + +++ LR+K+E+DP+ P + +T G+GY+F+ Sbjct: 184 IYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFV 232 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 10/234 (4%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 MT +L++EDE + R L L +G V + Q G A + DLI+LDL LP + Sbjct: 1 MTQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMN 60 Query: 60 GIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 G E + LR PVI+L+A++ E + + L +GADDY++KPFG+ EL AR+ LRR Sbjct: 61 GFEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRR 120 Query: 119 HSATTAPD-------PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVL 171 + + + +T+ + E + L P EF +L L G V+ Sbjct: 121 STGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVM 180 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 T+ L+N VWG + + + +++ LR+KLE DP H + G+GY+ ++ Sbjct: 181 TRDDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQS-VHIDSIRGVGYKLVV 233 >UniRef50_C6Q063 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q063_9CLOT Length = 367 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 ++L+V+DE++I F++ LE +G + A + A P +IILD+ LP +G E Sbjct: 149 HILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGYE 208 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 ++++W +I+L+A+ + D++ LD GADDY+ KPF EL AR+ LR ++ Sbjct: 209 VCSEIKKWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLR--NSL 266 Query: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 + ++ + ++ A I+ + L+P E+ LL LL N G VL++ +L +VWG Sbjct: 267 PELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG 326 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 + + + +Y+ +LR K+ + T G+GY+ ++ Sbjct: 327 FDFNGDVNIVEVYIRYLRDKIGDN--EHSIIRTVRGVGYKVVI 367 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 3/225 (1%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + N+LIV+D+ IR + LE +G + +EA L + K D++ILD+ +P+ DG Sbjct: 31 IPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDG 90 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 + +LR++ +P+++L+A+ E S K+ G DDYL KPF EL R++ L+R+ Sbjct: 91 FDVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ 150 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 T + ++ V ++ + GE+ V L EF LL L + AG+ ++ QL+ V Sbjct: 151 ITVSQS--IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDV 208 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 WG + + L +++ LR+K +++ ++ T G+GYR + Sbjct: 209 WGYDFEGNERTLDVHINRLREKFQEEKSKFS-IKTIRGLGYRLEV 252 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 6/227 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L++ED+ + L+ LE +G + T + + +PDLI+LD+ LPD DG Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 61 IEFIRDLRQWSA---VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 ++ + +R+ +PVI L+AR+ E+D+I L+ GA+DY+ KPF + EL AR+++ R Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR 125 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 P L++ V +D + + + LT EFRLL L+N G V ++ QLL Sbjct: 126 ---NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLL 182 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 N VWG + + +Y+ LRQK+E+DPA P + G GY F Sbjct: 183 NAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFE 229 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 VLIV+DE I +++ LE +G VFEA + L PDLI+LDL LPD G Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 E +R+ S VP+I+L+A+ +E I+ L GADDY++KPF EL AR+ RR + Sbjct: 65 EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLNE 124 Query: 122 TTAP-DPLVKF--SDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 P + F +D+ +D+ + I + E + LT ++++L LL K T+ +L++ Sbjct: 125 EVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREELIS 184 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 G + + + ++ ++RQK+E +P P++ IT G GYRF Sbjct: 185 TALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRF 229 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 +L+VED++ IR + L + V A + D+I+LDL LP G E Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR----H 119 ++ +R S VPVI+ +A+ ++DK+ L+ GADDY++KPF I EL AR++ +RR Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 S+ + D ++++ D+ ++++ V+ + ++LT EF ++ +L N G+ ++ QL N Sbjct: 123 SSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLYNA 182 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 +W + + L ++ LR KL + + T GIGY+ Sbjct: 183 IWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKME 227 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DE I ++ +L+ G V A+ Q L A T +PD ILD+ +P DG Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 63 FIRDLRQW-SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LR+ P + L+A+ D+I L GADDY++KPF + E+ RLRV LRR + Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 122 T-TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + L+ + D+T+D + + E V L+P EF+LL L+ NA VL++ ++L+ V Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 W + + + Y+ +LR+K+ D PR T G+GY Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKI--DTKEPRLIHTVRGVGYVL 251 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DE+AI + AL +G V + Q L A PDL++LD+ L D DG Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 63 FIRDLR-QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 LR VP + L+AR DK+ L G DDY++KPF + EL AR+R LRR + Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 122 TTAPD---PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 D ++F+D+ +D R + R V LT E+RLL LL NA VLT+ QLL+ Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 VWG + L Y+ +LR+K+ D P T G+GY L Sbjct: 260 HVWGHDFSGEGGVLETYISYLRRKV--DNVEPPLIHTVRGVGYVLRL 304 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 MT +LIVEDEQ + RF+ LE + V + GL +A + DLI+LDL LP+ +G Sbjct: 1 MTKILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNING 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 +E R +RQ P+I+++A+S+ DK+A LD GADDY+ KPF I EL AR+R LRR Sbjct: 61 LEICRQIRQNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRRQP 120 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 D D A + + + LT E+ LL +L+ N VL + Q++ V Sbjct: 121 QKNLIDIKGIIID----KDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDV 176 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 WG + ++ + +Y+ +LR KL+ + + T G+GY Sbjct: 177 WGYDTEVETNVVDVYIRYLRNKLKP-FGKDKCIETVRGVGYV 217 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 117/225 (52%), Gaps = 2/225 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +LIVED++ + + L +GM V R + +PDL++LD+ LP DG+ Sbjct: 10 PRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGL 69 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 R++R P+++L+AR+E+ D++ L+ GADDY++KP L AR+R LRR Sbjct: 70 TVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129 Query: 122 TTAPD--PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + ++F ++ +D R + E V T E+ LL +L +NAG++L++ + + Sbjct: 130 APSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 189 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 + G + + + +R K+ DP P+ T GY F+ Sbjct: 190 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFV 234 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +LI +DEQ + FL +E +G + +A Q L RK DL++LD+ +P+ DG+E Sbjct: 7 TILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGME 66 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 +R+LR +PVI+++A+S+E+D++ L +GADDY+ KPF EL AR+ +RR+ Sbjct: 67 ALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNYGY 126 Query: 123 TAPD--PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + +++ + V+L +R + E V LT EF LL + + +V + QLL+ V Sbjct: 127 NDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQLLDHV 186 Query: 181 WGPNA-VEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 WG N + +M +R K+ +F T G+GY Sbjct: 187 WGVNYTTGGHRTVDTHMKTMRFKMGSGGD---YFRTVYGVGYVLE 228 >UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria RepID=Q1NLC6_9DELT Length = 298 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 2/225 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L ++D+ I + L+ LE G + A +L PDL+ILDL LPDGDG+ Sbjct: 73 ATLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGL 132 Query: 62 EFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 EF L+ +PVI+L+AR + SDK+ L+ GADDY+ KPF EL AR++ LR + Sbjct: 133 EFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANP 192 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 L++ ++ +DL + + +EV+LT EF+LLA L+ N ++T+ ++ ++ Sbjct: 193 GAGTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRL 252 Query: 181 W-GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 W S + +++ HLRQK+E+ P++P H +T G GYRFM Sbjct: 253 WRDSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRFM 297 >UniRef50_Q2W608 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W608_MAGSA Length = 228 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 103/223 (46%), Positives = 142/223 (63%), Gaps = 1/223 (0%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M+ +L+V+DE IR+FLR +L +G V EAE+ GL PDL+ILDLGLPD DG Sbjct: 1 MSRILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAACPDLLILDLGLPDMDG 60 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E I +RQ +P+IVLS R++E DK+ ALD GA+DY++KPFG+ EL AR+R LR Sbjct: 61 QEIISAVRQDCDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLR-PH 119 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 +V+ + +DL V+ + E+HL+ E+ LLA + VLT + +L V Sbjct: 120 LPKEGGQVVESGSLKIDLDRLVVRKAGSEIHLSRKEWDLLAFFARHPDHVLTHKHILKGV 179 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WGP V+ + YLR+Y+ LRQKLE DPARPR +T+ G+GYR Sbjct: 180 WGPAHVDDTAYLRVYVNQLRQKLEDDPARPRLIVTDPGVGYRL 222 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 2/223 (0%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +LIVEDE I RF++ LE +G V + + GL +A DLIILD+ LP +G+ Sbjct: 4 KKILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGM 63 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-HS 120 E +R LRQ S +PVI+L+A+ E DK+ LD GA+DY++KPF I EL AR+RV + + Sbjct: 64 EVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123 Query: 121 ATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 + ++ + +D+ ++ + LT EF LL L+ N L++ +L +V Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + + ++ + +Y+ +LR K+ D ++ T G+GY+F Sbjct: 184 WGYDYLGDTNIVDVYIRYLRSKI-DDKFNKKYIYTIRGLGYQF 225 >UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AEE3 Length = 238 Score = 301 bits (773), Expect = 9e-81, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L+++DE+ I + L +G V + L + K DL+ILD+ +P DGI Sbjct: 11 PRILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDLEKFKIDLVILDMMMPGVDGI 70 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + + +R+ +PVI +SA++ + DKI L GADDY++KPF EL AR++ LRR+ Sbjct: 71 QALEMIREKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRRYQV 130 Query: 122 TTAP----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + P + +++ +D+ +D +++ V +T IE+ +L +L ++ G V + + Sbjct: 131 YSKPIGVDNSIIQANDLLIDTNKKMVSVDNRPVAVTKIEYEILVLLASHPGTVFSTEDIY 190 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 ++W A ++ + +++ LR+K+E+ P PRH IT GIGY+F L Sbjct: 191 TKIWHEEATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGYKFEL 238 >UniRef50_D2R313 Two component transcriptional regulator, winged helix family n=32 Tax=Bacteria RepID=D2R313_9PLAN Length = 235 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 115/220 (52%), Positives = 156/220 (70%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 VLI+EDE IR+ LR +L +G R+ EA + GL A + PDLI+LDLGLPD DG E Sbjct: 13 VLIIEDEAPIRKMLRASLTSEGYRIQEASSAAEGLKIATSPPPDLILLDLGLPDRDGQEV 72 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 + LR+W P+I+LSAR +ES KI ALD GADDY++KPF +GEL AR+R ALR T Sbjct: 73 LEQLREWYTSPIIILSARDQESQKIKALDHGADDYVTKPFSMGELLARMRTALRHSHRTG 132 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGP 183 D+ VD A+R+++R +EEVHLTP+E++LL ++ +AGKVLT R LL +VWGP Sbjct: 133 TEATATTIGDLKVDFASRLVYRKQEEVHLTPLEYKLLITMIKHAGKVLTHRFLLREVWGP 192 Query: 184 NAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +HYLR+++ LR+K+E DPARP++ +TE G+GYRF Sbjct: 193 QDSQENHYLRVFVAGLRRKIEVDPARPQYILTEQGVGYRF 232 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 80/219 (36%), Positives = 127/219 (57%), Gaps = 4/219 (1%) Query: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 LIVED++ + L +G V A+ + L +A T D+IILD+ +P DG++ Sbjct: 6 LIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVKVC 65 Query: 65 RDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTA 124 + LR S +P+I+L+A+S+ DK+ L+AGADDY++KPF EL R++ LRR++ Sbjct: 66 KQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKVQE 125 Query: 125 PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPN 184 ++K D+T+DL + + ++LTP EF LL VL N K + + LLN+VWG Sbjct: 126 EKIVLK--DLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIA 183 Query: 185 AVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + S+ + +Y+ ++R KLE P P+ +T G GY Sbjct: 184 SDYDSNIVDVYIKNIRNKLEDKP--PKLILTIRGRGYML 220 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 10/232 (4%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGD 59 VL++ED+ + + L + V A T GL + DL+ILDL LPD D Sbjct: 9 KTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMD 68 Query: 60 GIEFIRDLRQWSA-----VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRV 114 G++ + +RQ +I+L+A+ + +D++ L+ GADDY+SKPF EL AR+R Sbjct: 69 GMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRA 128 Query: 115 ALRRHSAT--TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 +RRH + + F + V + + +E V LT +F+LL ++GKVL+ Sbjct: 129 VMRRHDLPLHQQKEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSGKVLS 188 Query: 173 QRQLLNQVWGPNAVEH-SHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + QL + + ++ ++ + +++ LR +E +P +P+ IT G+GY+F Sbjct: 189 REQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 240 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 1 MT--NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M ++ IV+D+ IR+ + L+ +G E+ + + PDL +LD+ LP Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 +G EF R +R S P+I++SAR EE DKI L+ G+DDYL+KPF EL AR+ AL+R Sbjct: 61 NGYEFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR 120 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + S + +D R+++ EEV +T EF++L++L + + ++ +LL+ Sbjct: 121 WKQMKSHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELLS 180 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +WG + + + +R+KL++ P T G GYR Sbjct: 181 LIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRL 220 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA-ATRKPDLIILDLGLPDGDGI 61 VL+V+DE +R+ ++ L V EAE ++ + + LIILD+ +P DG Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + +++R++S VP+I+L+A+S+E D++ + G D+Y+SKPF L AR+ +RR Sbjct: 65 QVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRS-- 122 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 D ++ + +D AA + + + L+ EF LL + N G L++ ++LN VW Sbjct: 123 IQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNVW 182 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 + + + ++ LR K+ + T G+GY+F + Sbjct: 183 NYDYFGDARTIDTHVKKLRSKMGDKGD---YIKTIWGMGYKFEV 223 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 113/225 (50%), Gaps = 6/225 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +L++ED+ I + L+ +G GL A KPD I+LDL LP DG+ Sbjct: 3 KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGL 62 Query: 62 EFIRDLRQW---SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 R ++Q SA PV++++A+ EE+D++ L+ GADDY+ KPF E+ AR++ LRR Sbjct: 63 TVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR 122 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + VT+D+ LT EF LL L+ AG+VL + LLN Sbjct: 123 RETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLN 182 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + +++ LR+K+ + A T IGYRF Sbjct: 183 TVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRF 224 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 5/229 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L+++DE +I R + + G AE GL+ A PDL+I+D+ +P DG Sbjct: 1 MKKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 R +R+ PVI LSA+ + DK AG DDY+ KPF EL + LRR Sbjct: 61 FTTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRA 120 Query: 120 SATTAP----DPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 S AP ++ +D + + E + LTP EF++ L ++ G VL++ Q Sbjct: 121 SMAAAPVAPRGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQ 180 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 L+ WG V + + +++ LR+K+E DP+ PR T GIGYRF Sbjct: 181 LVEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFE 229 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 8/230 (3%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGD 59 M +L+ +DE+ IR LR LE G V EA ++ L T+ D+ +LD+ +P+ D Sbjct: 1 MPYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMD 60 Query: 60 GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR- 118 G + ++ LR+ S VPVIV+SA+ ++ +KI L+ GADDY+ KPF E AR+ +RR Sbjct: 61 GYQVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRL 120 Query: 119 ----HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174 + P +++ ++ +D A + E V LT +E+R++A+ + + G+V T++ Sbjct: 121 KGMAAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQ 180 Query: 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 Q+ W + V + + + M LR KL D T G+GYR Sbjct: 181 QIYECGWDEDYVAAENSVMVCMSRLRSKLGDDGQEA--IKTIRGLGYRLE 228 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 135/232 (58%), Gaps = 9/232 (3%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP-DLIILDLGLPDG 58 MT +LI++D++A++ LR E + V A T G+ A P D+++LD+ LPD Sbjct: 1 MTHRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDI 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 DG E ++ +R S VPVI+L+AR +++D+I L+ GADDY+ KPF EL AR++ LRR Sbjct: 61 DGFETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRR 120 Query: 119 HSATTAPDPL-------VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVL 171 +A+ P+ + F V +D A RV+ + E+ +T +E +L L+++ G L Sbjct: 121 ATASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPL 180 Query: 172 TQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 T+ +LL+ G + + +++ +R+KLE DP+ PR+ T G GY + Sbjct: 181 TRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMW 232 >UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97MA9_CLOAB Length = 235 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 135/229 (58%), Gaps = 5/229 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 + +L+V+DE++I + L T L+ +G V + G+ + P++IILD+ LPD DG Sbjct: 7 SKILLVDDEESILKLLTTVLKKEGFSNVITSTNGMDGVKKCRENAPEIIILDIMLPDIDG 66 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR-- 118 E R +R +S+VP++ LSA+SE++DKI L GADDY++KPF E+ R++ L+R Sbjct: 67 FEVFRQIRNFSSVPIMFLSAKSEDTDKIIGLGLGADDYITKPFSPKEVALRVKAHLKRIE 126 Query: 119 --HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + T + ++K T+D I + ++ L E LL L+ N +L++ ++ Sbjct: 127 MVKKSLTNRENIIKTEHFTIDFEKGEIIKNDKSTILRAKELLLLKYLVENKNIILSKEKI 186 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +N VW + V + + + +++ LRQKLE DP+ P++ +T G+GY+ L Sbjct: 187 VNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKLKL 235 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL+V+DE+ I +R LE +G +V + L + PDL+ILDL LP G++ Sbjct: 11 KVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGMD 70 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +++ ++P+I+++A+S E++ + L+ GADDY+ KPF EL AR+R LRR Sbjct: 71 LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKEG 130 Query: 123 TAPDPL---VKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + ++ ++L A EV LT IE+++L + + N G T+ +LL++ Sbjct: 131 EEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDKLLDR 190 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG + + + + LR KL + R T GIGYRF Sbjct: 191 VWGKDIYVTDRAVDVNIKRLRDKLGDEKER---LETIRGIGYRF 231 >UniRef50_C9XRU4 Two-component system response regulator n=12 Tax=Clostridium RepID=C9XRU4_CLODC Length = 278 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 130/227 (57%), Gaps = 4/227 (1%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMR-VFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 +L+V+DE+ I + L DG + + +A + PD++ILD+ LPD DG Sbjct: 48 KKILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAISLCKIACPDVVILDIMLPDIDG 107 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 IE + +R++S ++ LS+++++ DKI L +G DDY++KPF E+ R++ LRR Sbjct: 108 IEVCKKIREFSYCSILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQQ 167 Query: 121 AT---TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 + ++K D+T+D+ +++ E+ LT E+ LL+ + N K++ + +L Sbjct: 168 YQSIVPSDSAVIKIGDITIDIEGNRVYKDRNEIELTGREYHLLSYMAQNVNKIIGKERLY 227 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 QVWG + + + +++ H+R+K+E +P+ P+ IT G+GY+ + Sbjct: 228 EQVWGVYSSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKLV 274 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 8/224 (3%) Query: 1 MT--NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG 58 M ++L+VED+Q I+ ++ L V A G+ + + DLI+LD+ +P+ Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 59 DGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 +G E + +R S VP+I+L+A EE D++ D G DDY++KPF L R+ LRR Sbjct: 61 NGFEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 120 Query: 119 HSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLN 178 + L+ F +V +D+ A ++ + E+ LT EF +L +L N KVLT+ ++ Sbjct: 121 SYDKNVNNHLI-FKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVE 179 Query: 179 QVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222 +VWG + + + ++ +LR+KL + T GIGY+ Sbjct: 180 KVWGYDYFGETRIIDTHIKNLRKKL-----AIPYIKTIKGIGYK 218 >UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostridiales RepID=C9XR57_CLODC Length = 244 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 131/228 (57%), Gaps = 5/228 (2%) Query: 1 MT-NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK-PDLIILDLGLPDG 58 M +LI+EDE IR F+ L+ +G + EA T + + + T + +LD+ LPD Sbjct: 13 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDI 72 Query: 59 DGIEFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 GIE + +R+ + V +I+L+A+++E DKI +GADDY+ KPF I EL R+ LR Sbjct: 73 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLR 132 Query: 118 RHSA--TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 R + ++ + +D+ R + + +E+ LTP EF ++ L++NA + L++ Q Sbjct: 133 RVAKDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQ 192 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 +L++VWG N + + + + +R K+E DP++P++ T G GY F Sbjct: 193 ILDEVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCF 240 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 126/227 (55%), Gaps = 8/227 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M VLIVED++ IR+ L+ L + + E + K DL ILDL LP +G Sbjct: 1 MERVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNG 60 Query: 61 IEFIRDLRQW---SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 + ++ +R +PVI+LSA+ +E DKI LD GADDYL+KPF + EL AR+R LR Sbjct: 61 YDILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLR 120 Query: 118 RHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLL 177 R + L++ + +DL R++ EE V LT EF LL L N G+ +++ +L+ Sbjct: 121 RSKK---DERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELI 177 Query: 178 NQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 NQ+WG + + S L +++ LR+KL + A + +GYR + Sbjct: 178 NQIWGYDFIGESRTLDVHINSLRKKLGNEYAH--WIQSVRQVGYRLV 222 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 8/229 (3%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 VL++EDE + R L L +G + GL A R DLIILD+ LP +G E Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 63 FIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + LRQ P+I+L+AR+ E + + L GADDY++KPFG+ EL AR+ LRR Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 122 T-----TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQL 176 + ++ D+++ + E V L P EF +L L+ G V+T+ L Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 +N VWG + + + +++ LR+KLE + + G+GY+ ++ Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLEL--GQSVQIESIRGVGYKLVM 230 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 9/231 (3%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M +L++ED+ I +R +L+ + + GL PD++ILDL LPD DG Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 61 IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 IE R +R+ P+ +++AR+EE D+I L+ GADDY++KPF + EL+ R+ V RR Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 120 SATT-------APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLT 172 A +++ + +D R + + V+++ EF +L ++ + GKV + Sbjct: 121 DKKAGIKPNVGASGEIIR-GALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFS 179 Query: 173 QRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +L VWG + ++ +R KLE++ A+P T GIGYRF Sbjct: 180 REMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRF 230 >UniRef50_D2LY16 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillus RepID=D2LY16_BACS4 Length = 228 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 6/223 (2%) Query: 6 IVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIR 65 +VED + IR + L +G V A + + P +ILDL LP G E R Sbjct: 9 VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLMLPKLSGEEVCR 68 Query: 66 DLR--QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 +R + + + +I+L+A+ KI L GADDY+ KPF EL AR+ LRR Sbjct: 69 WIRSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRSGQFC 128 Query: 124 APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW-G 182 + + + + V+ + V+LT EF LL + N VL++ QL+ Q+ Sbjct: 129 QK---ISLNGLIIQPRKGVVLLNGKPVNLTKYEFNLLFYFMENPNIVLSREQLIQQIHPH 185 Query: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 + + ++ LR+K+E P++P+ T G+GYRF++ Sbjct: 186 TDVDILDRTIDAHIKKLREKIEDVPSKPKKIQTVRGMGYRFVV 228 >UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA Length = 230 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 + I +D++AIR L L+ +G + A+ Q L A+T DL+ILDL +P GIE Sbjct: 7 ICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLMMPVMGGIEA 66 Query: 64 IRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATT 123 ++R+ +P+++L+A++ + D + + GADDY+ KPF E+ R++ LRR+ Sbjct: 67 CIEIRKTQFMPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLLRRYRDYG 126 Query: 124 APD----PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 + + F +VT+DL R + E + LTP EF +LA + + +VLT Q+ Sbjct: 127 SDRADLTSTLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVLTVEQIYEA 186 Query: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 VWG A E + + +++ +R+KLE P +P T G+GYR Sbjct: 187 VWGEAAFEVDNTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230 >UniRef50_B8GBC5 Two component transcriptional regulator, winged helix family n=4 Tax=Chloroflexi (class) RepID=B8GBC5_CHLAD Length = 227 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 134/223 (60%), Gaps = 5/223 (2%) Query: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 +L+V+D+ ++ +R LE +G RV + + + ++PDL+ILD+ LPD DG+ Sbjct: 6 TILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQRPDLVILDIMLPDLDGLT 65 Query: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 + +R++++ P+++L+A++ D I LD GADDYL+KPF EL AR+R LRR + Sbjct: 66 VCQRVREFASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRRVPSV 125 Query: 123 TAPDPLVKFSD--VTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 P + + +T++ R + + LTP E++LL VL AG V+T QLL V Sbjct: 126 NRP---LTVGNGLITINPRQREVRVRGTIIDLTPTEYQLLMVLAEQAGAVVTHEQLLRAV 182 Query: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 WG + YL++Y+ HLR+K+E DP +P+ +TE G+GYR Sbjct: 183 WGNEPNRDNDYLKVYIWHLRRKIEFDPRQPQLLLTEWGVGYRL 225 >UniRef50_Q188S4 Putative lantibiotic resistance two-component response regulator n=6 Tax=Clostridium difficile RepID=Q188S4_CLOD6 Length = 230 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 6/228 (2%) Query: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 M+ +LI++DE + L L+ G V A Q G+ + PDLIILD+ +P +G Sbjct: 1 MSKILIIDDEMDLVMLLEDELKAKGHEVLIAYDGQAGIELSKQE-PDLIILDIMMPKMNG 59 Query: 61 IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 E + +R P+I LSA+ E+DKI L G DDY++KPFG+ EL AR+ LRR Sbjct: 60 FEVCQAIRDDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREK 119 Query: 121 ATT-----APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQ 175 + + F + + + R I + + LT IE+ ++ +L +AG+V ++ Q Sbjct: 120 RSQYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQ 179 Query: 176 LLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223 + +VWG ++ S + + +R K + T GIGY++ Sbjct: 180 IYEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGYKW 227 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61 +++L++ED+ I+ + L +G +V A G+ + DL+ILD+ +P+ DG Sbjct: 3 SSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLDGY 62 Query: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 + +R+ S+VP+I L+A ++E D++ D DDY++KPF L R+ LRR + Sbjct: 63 GVCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNK 122 Query: 122 TTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW 181 T D + F + +DL + E + LT EF +L L+ +V+T+ LL+ +W Sbjct: 123 T-INDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIW 181 Query: 182 GPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 G + + + ++ ++R+K+ + P + T GIGY Sbjct: 182 GYDYYGDTRIVDAHIKNIRKKI----SLP-YIKTVKGIGYTLE 219 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.222 0.882 Lambda K H 0.267 0.0681 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,466,210,726 Number of Sequences: 3077464 Number of extensions: 184268553 Number of successful extensions: 516236 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 34245 Number of HSP's successfully gapped in prelim test: 17496 Number of HSP's that attempted gapping in prelim test: 405149 Number of HSP's gapped (non-prelim): 60684 length of query: 225 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 101 effective length of database: 658,790,820 effective search space: 66537872820 effective search space used: 66537872820 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 92 (39.3 bits)