Phyre 2 alignment of P25798 with c1yy7A_

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Job Description | P25798
Confidence | 20.40% | Date | Thu Jan 5 11:42:39 GMT 2012
Rank | 60 | Aligned Residues | 34
% Identity | 21% | Template | c1yy7A_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:stringent starvation protein a; | PDBTitle: crystal structure of stringent starvation protein a (sspa),2 an rna polymerase-associated transcription factor
Resolution | 2.02 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | A | K | A | P | D | Y | R | T | L | F | S | N | L | S | D | Q | D | G | G | A | I | V | S | Q | L | T | Q | M | N | I | P | Y | R | F
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | N | K | R | S | V | M | T | L | F | S | G | P | T | D | I | F | S | H | Q | V | R | I | V | L | A | E | K | G | V | S | V | E | I
Template Known Secondary structure |  | G | G | G | S | S | S |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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