Phyre 2 Results for P25798

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P25798
Date | Thu Jan 5 11:42:39 GMT 2012
Unique Job ID | a0377b43ee3f9501

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2y9jt_
Top template information
PDB header:protein transport Chain: T: PDB Molecule:protein prgh; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution
Confidence and coverage
Confidence: | 100.0% | Coverage: | 30%
163 residues ( 30% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | A | T | A | A | Q | T | K | S | L | E | W | L | N | R | L | R | A | N | P | K | I | P | L | I | V | A | G | S | A | A | V | A | V | M | V | A | L | I | L | W | A | K | A | P | D | Y | R | T | L | F | S | N | L | S | D | Q | D | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | G | A | I | V | S | Q | L | T | Q | M | N | I | P | Y | R | F | S | E | A | S | G | A | I | E | V | P | A | D | K | V | H | E | L | R | L | R | L | A | Q | Q | G | L | P | K | G | G | A | V | G | F | E | L | L | D | Q | E | K | F | G | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | S | Q | F | S | E | Q | V | N | Y | Q | R | A | L | E | G | E | L | S | R | T | I | E | T | I | G | P | V | K | G | A | R | V | H | L | A | M | P | K | P | S | L | F | V | R | E | Q | K | S | P | S | A | S | V | T | V | N | L | L | P | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | R | A | L | D | E | G | Q | I | S | A | I | V | H | L | V | S | S | A | V | A | G | L | P | P | G | N | V | T | L | V | D | Q | G | G | H | L | L | T | Q | S | N | T | S | G | R | D | L | N | D | A | Q | L | K | Y | A | S | D | V | E | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | R | I | Q | R | R | I | E | A | I | L | S | P | I | V | G | N | G | N | I | H | A | Q | V | T | A | Q | L | D | F | A | S | K | E | Q | T | E | E | Q | Y | R | P | N | G | D | E | S | H | A | A | L | R | S | R | Q | L | N | E | S | E | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | S | G | S | G | Y | P | G | G | V | P | G | A | L | S | N | Q | P | A | P | A | N | N | A | P | I | S | T | P | P | A | N | Q | N | N | R | Q | Q | Q | A | S | T | T | S | N | S | G | P | R | S | T | Q | R | N | E | T | S | N | Y | E | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | D | R | T | I | R | H | T | K | M | N | V | G | D | V | Q | R | L | S | V | A | V | V | V | N | Y | K | T | L | P | D | G | K | P | L | P | L | S | N | E | Q | M | K | Q | I | E | D | L | T | R | E | A | M | G | F | S | E | K | R | G | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | S | L | N | V | V | N | S | P | F | N | S | S | D | E | S | G | G | E | L | P | F | W | Q | Q | Q | A | F | I | D | Q | L | L | A | A | G | R | W | L | L | V | L | L | V | A | W | L | L | W | R | K | A | V | R | P | Q | L | T | R | R | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | E | A | M | K | A | V | Q | Q | Q | A | Q | A | R | E | E | V | E | D | A | V | E | V | R | L | S | K | D | E | Q | L | Q | Q | R | R | A | N | Q | R | L | G | A | E | V | M | S | Q | R | I | R | E | M | S | D | N | D | P | R | V | V | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | .
Sequence |  | L | V | I | R | Q | W | I | N | N | D | H | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2y9jt_ |

### PDB 2y9j chain T

Region: 49 - 212
Aligned: 163
Modelled: 164
Confidence: 100.0%
Identity: 21%
PDB header:protein transport
Chain: T: PDB Molecule:protein prgh;
PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution

Phyre2
2 |
| c1yj7A_ |

### PDB 1yj7 chain A

Region: 49 - 214
Aligned: 148
Modelled: 166
Confidence: 100.0%
Identity: 24%
PDB header:protein transport
Chain: A: PDB Molecule:escj;
PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj

Phyre2
3 |
| c2hfvA_ |

### PDB 2hfv chain A

Region: 45 - 102
Aligned: 58
Modelled: 58
Confidence: 92.5%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rpa1041;
PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90.

Phyre2
4 |
| d2hfva1 |

### PDB 2hfv chain A domain 1

Region: 48 - 102
Aligned: 55
Modelled: 55
Confidence: 86.7%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: GlnB-like
Family: RPA1041-like

Phyre2
5 |
| d1yqha1 |

### PDB 1yqh chain A domain 1

Region: 58 - 104
Aligned: 47
Modelled: 47
Confidence: 80.7%
Identity: 13%
Fold: Ferredoxin-like
Superfamily: MTH1187/YkoF-like
Family: MTH1187-like

Phyre2
6 |
| d1lxna_ |

### PDB 1lxn chain A

Region: 57 - 104
Aligned: 48
Modelled: 48
Confidence: 79.1%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: MTH1187/YkoF-like
Family: MTH1187-like

Phyre2
7 |
| d1vk8a_ |

### PDB 1vk8 chain A

Region: 58 - 93
Aligned: 36
Modelled: 36
Confidence: 78.0%
Identity: 6%
Fold: Ferredoxin-like
Superfamily: MTH1187/YkoF-like
Family: MTH1187-like

Phyre2
8 |
| d1lxja_ |

### PDB 1lxj chain A

Region: 57 - 104
Aligned: 48
Modelled: 48
Confidence: 77.8%
Identity: 17%
Fold: Ferredoxin-like
Superfamily: MTH1187/YkoF-like
Family: MTH1187-like

Phyre2
9 |
| d2iboa1 |

### PDB 2ibo chain A domain 1

Region: 58 - 93
Aligned: 36
Modelled: 33
Confidence: 71.4%
Identity: 8%
Fold: Ferredoxin-like
Superfamily: MTH1187/YkoF-like
Family: MTH1187-like

Phyre2
10 |
| c2epiA_ |

### PDB 2epi chain A

Region: 57 - 93
Aligned: 37
Modelled: 37
Confidence: 63.4%
Identity: 5%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0045 protein mj1052;
PDBTitle: crystal structure pf hypothetical protein mj1052 from2 methanocaldococcus jannascii (form 2)

Phyre2
11 |
| c2rddB_ |

### PDB 2rdd chain B

Region: 453 - 488
Aligned: 36
Modelled: 36
Confidence: 60.4%
Identity: 19%
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.

Phyre2
12 |
| c1oy8A_ |

### PDB 1oy8 chain A

Region: 136 - 271
Aligned: 115
Modelled: 136
Confidence: 54.5%
Identity: 12%
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump

Phyre2
13 |
| c2flzC_ |

### PDB 2flz chain C

Region: 129 - 210
Aligned: 82
Modelled: 82
Confidence: 53.9%
Identity: 12%
PDB header:hydrolase
Chain: C: PDB Molecule:cis-3-chloroacrylic acid dehalogenase;
PDBTitle: the x-ray structure of cis-3-chloroacrylic acid dehalogenase (cis-2 caad) with a sulfate ion bound in the active site

Phyre2
14 |
| d2yzca1 |

### PDB 2yzc chain A domain 1

Region: 114 - 176
Aligned: 63
Modelled: 63
Confidence: 52.2%
Identity: 19%
Fold: T-fold
Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like
Family: Urate oxidase (uricase)

Phyre2
15 |
| d1b6ga_ |

### PDB 1b6g chain A

Region: 534 - 550
Aligned: 17
Modelled: 17
Confidence: 48.1%
Identity: 6%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Haloalkane dehalogenase

Phyre2
16 |
| c2h7xA_ |

### PDB 2h7x chain A

Region: 531 - 549
Aligned: 19
Modelled: 19
Confidence: 47.9%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:type i polyketide synthase pikaiv;
PDBTitle: pikromycin thioesterase adduct with reduced triketide2 affinity label

Phyre2
17 |
| d2h7xa1 |

### PDB 2h7x chain A domain 1

Region: 531 - 549
Aligned: 19
Modelled: 19
Confidence: 41.8%
Identity: 21%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases

Phyre2
18 |
| c3g7sA_ |

### PDB 3g7s chain A

Region: 135 - 212
Aligned: 60
Modelled: 78
Confidence: 40.8%
Identity: 22%
PDB header:ligase
Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1);
PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus

Phyre2
19 |
| d2b61a1 |

### PDB 2b61 chain A domain 1

Region: 534 - 550
Aligned: 17
Modelled: 17
Confidence: 40.4%
Identity: 18%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: O-acetyltransferase

Phyre2
20 |
| c3hd7A_ |

### PDB 3hd7 chain A

Region: 13 - 44
Aligned: 28
Modelled: 32
Confidence: 37.8%
Identity: 18%
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2y9jt_ |
|  | 100.0 | 21 | PDB header:protein transport Chain: T: PDB Molecule:protein prgh; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution
2 | c1yj7A_ |
|  | 100.0 | 24 | PDB header:protein transport Chain: A: PDB Molecule:escj; PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj
3 | c2hfvA_ |
|  | 92.5 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90.
4 | d2hfva1 |
|  | 86.7 | 24 | Fold:Ferredoxin-like Superfamily:GlnB-like Family:RPA1041-like
5 | d1yqha1 |
|  | 80.7 | 13 | Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like
6 | d1lxna_ |
|  | 79.1 | 23 | Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like
7 | d1vk8a_ |
|  | 78.0 | 6 | Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like
8 | d1lxja_ |
|  | 77.8 | 17 | Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like
9 | d2iboa1 |
|  | 71.4 | 8 | Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like
10 | c2epiA_ |
|  | 63.4 | 5 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0045 protein mj1052; PDBTitle: crystal structure pf hypothetical protein mj1052 from2 methanocaldococcus jannascii (form 2)
11 | c2rddB_ |
|  | 60.4 | 19 | PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
12 | c1oy8A_ |
|  | 54.5 | 12 | PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
13 | c2flzC_ |
|  | 53.9 | 12 | PDB header:hydrolase Chain: C: PDB Molecule:cis-3-chloroacrylic acid dehalogenase; PDBTitle: the x-ray structure of cis-3-chloroacrylic acid dehalogenase (cis-2 caad) with a sulfate ion bound in the active site
14 | d2yzca1 |
|  | 52.2 | 19 | Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase)
15 | d1b6ga_ |
|  | 48.1 | 6 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloalkane dehalogenase
16 | c2h7xA_ |
|  | 47.9 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:type i polyketide synthase pikaiv; PDBTitle: pikromycin thioesterase adduct with reduced triketide2 affinity label
17 | d2h7xa1 |
|  | 41.8 | 21 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases
18 | c3g7sA_ |
|  | 40.8 | 22 | PDB header:ligase Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1); PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus
19 | d2b61a1 |
|  | 40.4 | 18 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase
20 | c3hd7A_ |
|  | 37.8 | 18 | PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
21 | c3n4dF_ |
| not modelled | 36.4 | 16 | PDB header:hydrolase Chain: F: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of cg10062 inactivated by(r)-oxirane-2-carboxylate
22 | d1cr6a2 |
| not modelled | 35.1 | 15 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Epoxide hydrolase
23 | c1zhvA_ |
| not modelled | 33.7 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu0741; PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8.
24 | c2xuaH_ |
| not modelled | 33.2 | 0 | PDB header:hydrolase Chain: H: PDB Molecule:3-oxoadipate enol-lactonase; PDBTitle: crystal structure of the enol-lactonase from burkholderia2 xenovorans lb400
25 | d1otfa_ |
| not modelled | 33.0 | 14 | Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like
26 | d1zhva2 |
| not modelled | 32.8 | 19 | Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like
27 | c3bf7B_ |
| not modelled | 32.5 | 26 | PDB header:hydrolase Chain: B: PDB Molecule:esterase ybff; PDBTitle: 1.1 resolution structure of ybff, a new esterase from2 escherichia coli: a unique substrate-binding crevice3 generated by domain arrangement
28 | c3etcB_ |
| not modelled | 31.7 | 14 | PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298
29 | d1gksa_ |
| not modelled | 30.1 | 10 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
30 | d1r3da_ |
| not modelled | 29.8 | 19 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hypothetical protein VC1974
31 | c2yzbA_ |
| not modelled | 29.3 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:uricase; PDBTitle: crystal structure of uricase from arthrobacter globiformis2 in complex with uric acid (substrate)
32 | c3lcrA_ |
| not modelled | 28.7 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:tautomycetin biosynthetic pks; PDBTitle: thioesterase from tautomycetin biosynthhetic pathway
33 | c2aj1A_ |
| not modelled | 28.5 | 28 | PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada
34 | d1ic8a2 |
| not modelled | 28.2 | 15 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:POU-specific domain
35 | c3l80A_ |
| not modelled | 27.0 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein smu.1393c; PDBTitle: crystal structure of smu.1393c from streptococcus mutans ua159
36 | c3gacD_ |
| not modelled | 26.8 | 13 | PDB header:cytokine Chain: D: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: structure of mif with hpp
37 | c1y37A_ |
| not modelled | 26.8 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:fluoroacetate dehalogenase; PDBTitle: structure of fluoroacetate dehalogenase from burkholderia sp. fa1
38 | d1qlwa_ |
| not modelled | 26.2 | 39 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:A novel bacterial esterase
39 | d1bjpa_ |
| not modelled | 26.1 | 25 | Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like
40 | c2kncB_ |
| not modelled | 25.9 | 30 | PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
41 | c3fwtA_ |
| not modelled | 25.6 | 15 | PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: crystal structure of leishmania major mif2
42 | d1pg4a_ |
| not modelled | 25.6 | 17 | Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like
43 | c3ol4B_ |
| not modelled | 25.5 | 23 | PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
44 | d1mo2a_ |
| not modelled | 25.3 | 22 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases
45 | c1mo2A_ |
| not modelled | 25.3 | 22 | PDB header:transferase Chain: A: PDB Molecule:erythronolide synthase, modules 5 and 6; PDBTitle: thioesterase domain from 6-deoxyerythronolide synthase2 (debs te), ph 8.5
46 | c3ry0A_ |
| not modelled | 25.1 | 25 | PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway
47 | c3fobA_ |
| not modelled | 25.1 | 0 | PDB header:oxidoreductase Chain: A: PDB Molecule:bromoperoxidase; PDBTitle: crystal structure of bromoperoxidase from bacillus anthracis
48 | d2rhwa1 |
| not modelled | 24.7 | 0 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carbon-carbon bond hydrolase
49 | c1j2gC_ |
| not modelled | 24.6 | 10 | PDB header:oxidoreductase Chain: C: PDB Molecule:uricase; PDBTitle: crystal structure of urate oxidase from bacillus sp. tb-90 co-2 crystallized with 8-azaxanthine
50 | c2xmzA_ |
| not modelled | 24.6 | 10 | PDB header:lyase Chain: A: PDB Molecule:hydrolase, alpha/beta hydrolase fold family; PDBTitle: structure of menh from s. aureus
51 | c2vavL_ |
| not modelled | 24.3 | 13 | PDB header:transferase Chain: L: PDB Molecule:acetyl-coa--deacetylcephalosporin c PDBTitle: crystal structure of deacetylcephalosporin c2 acetyltransferase (dac-soak)
52 | d2hmfa2 |
| not modelled | 23.0 | 8 | Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like
53 | c2xczA_ |
| not modelled | 22.5 | 13 | PDB header:immune system Chain: A: PDB Molecule:possible atls1-like light-inducible protein; PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus
54 | d1u1ia1 |
| not modelled | 22.3 | 12 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
55 | c2op8A_ |
| not modelled | 21.8 | 33 | PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase
56 | d1uaaa2 |
| not modelled | 21.6 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain
57 | c2kt2A_ |
| not modelled | 21.4 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase
58 | d1eh1a_ |
| not modelled | 21.0 | 16 | Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF
59 | d2vata1 |
| not modelled | 20.8 | 13 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase
60 | c1yy7A_ |
| not modelled | 20.4 | 21 | PDB header:transcription Chain: A: PDB Molecule:stringent starvation protein a; PDBTitle: crystal structure of stringent starvation protein a (sspa),2 an rna polymerase-associated transcription factor
61 | d1is1a_ |
| not modelled | 20.3 | 11 | Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF
62 | c1cr6A_ |
| not modelled | 20.2 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase; PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor
63 | c2ronA_ |
| not modelled | 20.1 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:surfactin synthetase thioesterase subunit; PDBTitle: the external thioesterase of the surfactin-synthetase
64 | d1dd5a_ |
| not modelled | 20.0 | 5 | Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF
65 | c3mlcC_ |
| not modelled | 20.0 | 13 | PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate
66 | c2kkhA_ |
| not modelled | 19.8 | 17 | PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4
67 | d1w36b2 |
| not modelled | 19.7 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain
68 | d1z3ea1 |
| not modelled | 19.4 | 19 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like
69 | d1uk8a_ |
| not modelled | 19.1 | 5 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carbon-carbon bond hydrolase
70 | c2cjpA_ |
| not modelled | 18.7 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase; PDBTitle: structure of potato (solanum tuberosum) epoxide hydrolase i2 (steh1)
71 | d1ek8a_ |
| not modelled | 18.7 | 13 | Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF
72 | c2f06B_ |
| not modelled | 18.3 | 6 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron
73 | c3qyjB_ |
| not modelled | 18.2 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:alr0039 protein; PDBTitle: crystal structure of alr0039, a putative alpha/beta hydrolase from2 nostoc sp pcc 7120.
74 | c2rogA_ |
| not modelled | 18.2 | 16 | PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells
75 | c3b64A_ |
| not modelled | 18.2 | 14 | PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major
76 | d1a8qa_ |
| not modelled | 18.0 | 13 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase
77 | c3h3yF_ |
| not modelled | 17.8 | 12 | PDB header:viral protein Chain: F: PDB Molecule:baseplate structural protein gp6; PDBTitle: fitting of the gp6 crystal structure into 3d cryo-em2 reconstruction of bacteriophage t4 star-shaped baseplate
78 | c3a2nF_ |
| not modelled | 17.4 | 11 | PDB header:hydrolase Chain: F: PDB Molecule:haloalkane dehalogenase; PDBTitle: crystal structure of dbja (wild type type ii p21)
79 | c2g29A_ |
| not modelled | 17.3 | 10 | PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803
80 | d1osda_ |
| not modelled | 17.2 | 17 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
81 | c2k2pA_ |
| not modelled | 17.1 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183
82 | c3l78A_ |
| not modelled | 17.0 | 17 | PDB header:transcription Chain: A: PDB Molecule:regulatory protein spx; PDBTitle: the crystal structure of smu.1142c from streptococcus mutans ua159
83 | d1gyxa_ |
| not modelled | 17.0 | 16 | Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like
84 | c3mb2G_ |
| not modelled | 17.0 | 25 | PDB header:isomerase Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily
85 | d1sb6a_ |
| not modelled | 16.6 | 10 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
86 | d2aw0a_ |
| not modelled | 16.4 | 33 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
87 | c2dahA_ |
| not modelled | 16.2 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3
88 | c2l3mA_ |
| not modelled | 16.2 | 21 | PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames
89 | d2qifa1 |
| not modelled | 16.1 | 16 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
90 | d2pl5a1 |
| not modelled | 16.1 | 6 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase
91 | d2ddha2 |
| not modelled | 16.0 | 23 | Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:acyl-CoA oxidase C-terminal domains
92 | d1q8la_ |
| not modelled | 16.0 | 20 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
93 | c1yg0A_ |
| not modelled | 16.0 | 17 | PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori
94 | d1n6za_ |
| not modelled | 15.8 | 15 | Fold:Hypothetical protein Yml108w Superfamily:Hypothetical protein Yml108w Family:Hypothetical protein Yml108w
95 | c1sr9A_ |
| not modelled | 15.7 | 22 | PDB header:transferase Chain: A: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of leua from mycobacterium tuberculosis
96 | c2l9bA_ |
| not modelled | 15.6 | 19 | PDB header:transcription Chain: A: PDB Molecule:mrna 3'-end-processing protein rna15; PDBTitle: heterodimer between rna14p monkeytail domain and rna15p hinge domain2 of the yeast cf ia complex
97 | c3fsgC_ |
| not modelled | 15.6 | 5 | PDB header:hydrolase Chain: C: PDB Molecule:alpha/beta superfamily hydrolase; PDBTitle: crystal structure of alpha/beta superfamily hydrolase from oenococcus2 oeni psu-1
98 | d1pyya1 |
| not modelled | 15.4 | 13 | Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
99 | d2i52a1 |
| not modelled | 15.4 | 17 | Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0