Phyre 2 alignment of P25798 with c2xczA_

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Job Description | P25798
Confidence | 22.53% | Date | Thu Jan 5 11:42:39 GMT 2012
Rank | 53 | Aligned Residues | 80
% Identity | 13% | Template | c2xczA_
PDB info | PDB header:immune system | Chain: A: PDB Molecule:possible atls1-like light-inducible protein; | PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus
Resolution | 1.64 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |  | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |  |  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Q | R | A | L | E | G | E | L | S | R | T | I | E | T | I | G | P | V | K | G | A | R | V | H | L | A | M | . | P | K | P | S | L | F | V | R | E | Q | K | S | P | S | A | S | V | T | V | N | L | L | P | G | . | . | R | A | L | D | E | G | Q | I | S | A | I | V | H | L | V | S | S | A | V | A | G | L | P | P | G | N
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Template Sequence |  | A | N | S | L | L | Q | E | L | S | S | K | L | A | E | L | L | G | K | P | E | K | Y | V | M | T | S | L | Q | C | G | V | P | M | T | F | S | G | N | T | E | P | T | C | Y | V | E | V | K | S | I | G | A | L | D | G | S | R | T | Q | E | V | S | E | L | V | C | G | H | I | E | Q | N | L | . | G | I | P | A | D | R
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  | G | G | G |  |  |  |  |  |  |  | S |  |  |  |  | B | T | T | B |  | S | S |  |  |  |  |  |  |  |  | S | S |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  | G | G | G
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |  | . | . | 90 | . | . | .
|  | 207 | . | . | 210
Predicted Secondary structure |  |  |  |  |
Query SS confidence |  |  |  |  |
Query Sequence |  | V | T | L | V
Query Conservation |  |  |  |  |
Alig confidence |  |  |  |  |
Template Conservation |  |  |  |  |
Template Sequence |  | I | Y | I | G
Template Known Secondary structure |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |
Template SS confidence |  |  |  |  |
|  | 94 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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