12/01/2012 21:45:35 : INFO  : Run start: Thu Jan 12 21:45:33 GMT 2012
12/01/2012 21:45:39 : INFO  : Initialised job
12/01/2012 21:45:41 : INFO  : Renaming log file 'phyre2_20120112_214533.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/a0377b43ee3f9501/phyre_20120112_214533.log'
12/01/2012 21:45:42 : INFO  : Initialised job:
Sequence
>batch____
MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG
GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGI
SQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPG
RALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDVEG
RIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQ
SGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNYEV
DRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQMKQIEDLTREAMGFSEKRGD
SLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRA
EAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVA
LVIRQWINNDHE

12/01/2012 21:45:43 : INFO  : Checked sequence
12/01/2012 21:45:46 : INFO  : Finding homologues with PSI-BLAST
12/01/2012 21:45:48 : INFO  : PSI-BLAST 3 iterations
12/01/2012 21:48:10 : INFO  : PSI-BLAST 5 iterations
12/01/2012 21:49:37 : INFO  : Finished PSI-BLAST
12/01/2012 21:49:40 : INFO  : Running Buildali to generate a3m file
12/01/2012 21:59:09 : INFO  : Converting to HMM
12/01/2012 21:59:15 : INFO  : Calibrating HMM
12/01/2012 21:59:35 : INFO  : Searching HMM database
12/01/2012 22:09:08 : INFO  : Finished buildali
12/01/2012 22:09:11 : INFO  : Predicting secondary structure
12/01/2012 22:09:21 : INFO  : Predicted secondary structure (PSI-Pred)
12/01/2012 22:09:23 : INFO  : Predicting Disordered regions
12/01/2012 22:09:28 : INFO  : Predicted Disorder (Disopred)
12/01/2012 22:09:30 : INFO  : Running memsat_svm check
12/01/2012 22:12:50 : INFO  : Running memsat_svm full
12/01/2012 22:18:17 : INFO  : Predicted Transmembrane (memsat_svm) ID 'a0377b43ee3f9501'
12/01/2012 22:18:19 : INFO  : Initialising fold library search
12/01/2012 22:18:24 : INFO  : Initialised search input
12/01/2012 22:18:27 : INFO  : Building Ensemble models
12/01/2012 22:18:32 : INFO  : Building hh.c2y9jt_.model.1.pdb
12/01/2012 22:18:54 : INFO  : Building hh.c1yj7A_.model.2.pdb
12/01/2012 22:19:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a0377b43ee3f9501/hh.c1yj7A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a0377b43ee3f9501/c1yj7A_.2.pdb
12/01/2012 22:19:15 : INFO  : Building hh.c2rddB_.model.3.pdb
12/01/2012 22:19:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a0377b43ee3f9501/hh.c2rddB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a0377b43ee3f9501/c2rddB_.11.pdb
12/01/2012 22:19:39 : INFO  : Building hh.c1oy8A_.model.4.pdb
12/01/2012 22:19:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a0377b43ee3f9501/hh.c1oy8A_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a0377b43ee3f9501/c1oy8A_.12.pdb
12/01/2012 22:20:02 : INFO  : Building c2y9jt_.1.pdb
12/01/2012 22:20:22 : INFO  : Building c1yj7A_.2.pdb
12/01/2012 22:20:43 : INFO  : Building c2hfvA_.3.pdb
12/01/2012 22:21:02 : INFO  : Building d2hfva1.4.pdb
12/01/2012 22:21:21 : INFO  : Building d1yqha1.5.pdb
12/01/2012 22:21:42 : INFO  : Building d1lxna_.6.pdb
12/01/2012 22:22:00 : INFO  : Building d1vk8a_.7.pdb
12/01/2012 22:22:20 : INFO  : Building d1lxja_.8.pdb
12/01/2012 22:22:39 : INFO  : Building d2iboa1.9.pdb
12/01/2012 22:22:59 : INFO  : Building c2epiA_.10.pdb
12/01/2012 22:23:19 : INFO  : Building c2rddB_.11.pdb
12/01/2012 22:23:38 : INFO  : Building c1oy8A_.12.pdb
12/01/2012 22:23:57 : INFO  : Building c2flzC_.13.pdb
12/01/2012 22:24:15 : INFO  : Building d2yzca1.14.pdb
12/01/2012 22:24:33 : INFO  : Building d1b6ga_.15.pdb
12/01/2012 22:24:53 : INFO  : Building c2h7xA_.16.pdb
12/01/2012 22:25:12 : INFO  : Building d2h7xa1.17.pdb
12/01/2012 22:25:30 : INFO  : Building c3g7sA_.18.pdb
12/01/2012 22:25:49 : INFO  : Building d2b61a1.19.pdb
12/01/2012 22:26:09 : INFO  : Building c3hd7A_.20.pdb
12/01/2012 22:26:39 : INFO  : Finished HH model building
12/01/2012 22:26:41 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
12/01/2012 22:28:06 : INFO  : html domain output complete ID 'a0377b43ee3f9501'
12/01/2012 22:43:30 : INFO  : Run end  : Thu Jan 12 22:43:28 GMT 2012
