BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (440 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q6D445 Chromosome partition protein mukF n=8 Tax=Gammap... 750 0.0 UniRef50_Q65TL7 Chromosome partition protein mukF n=96 Tax=Gamma... 623 e-177 UniRef50_B7VMH0 Chromosome partition protein mukF n=179 Tax=Gamm... 565 e-159 UniRef50_A9G7H5 MukF protein n=2 Tax=Proteobacteria RepID=A9G7H5... 126 2e-27 >UniRef50_Q6D445 Chromosome partition protein mukF n=8 Tax=Gammaproteobacteria RepID=MUKF_ERWCT Length = 441 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/441 (83%), Positives = 407/441 (92%), Gaps = 1/441 (0%) Query: 1 MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVS 60 MS+FSQTVPELVAWARKNDFSISLP +RL+FL+A+ATLNGER+DGEMSEGEL+DAFRHVS Sbjct: 1 MSDFSQTVPELVAWARKNDFSISLPTERLAFLMAIATLNGERMDGEMSEGELIDAFRHVS 60 Query: 61 DAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF 120 F+QTSETI +RANNAIND+VRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF Sbjct: 61 QGFDQTSETITIRANNAINDLVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF 120 Query: 121 STLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDE 180 STLRLSMQLSIVA EL RAADAAEE GDEFHWHRNV+APLKYSVAEIFDSIDL+QR+MDE Sbjct: 121 STLRLSMQLSIVAQELSRAADAAEEDGDEFHWHRNVFAPLKYSVAEIFDSIDLSQRVMDE 180 Query: 181 QQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDAT 240 QQQ VKDDIA LLN+DWRAAISSCE LL+ETS TLRELQDTLEAAGDKLQ +LL IQD Sbjct: 181 QQQGVKDDIAALLNQDWRAAISSCEQLLTETSSTLRELQDTLEAAGDKLQTSLLSIQDTI 240 Query: 241 MTH-DDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQ 299 M + +L FVD+LVFDLQ+KLDRI+SWGQQ+IDLWIGYDRHVHKFIRTAIDMDKNRVFAQ Sbjct: 241 MNNPHNLEFVDKLVFDLQNKLDRIVSWGQQTIDLWIGYDRHVHKFIRTAIDMDKNRVFAQ 300 Query: 300 RLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIREQLA 359 RLRQSVQ+YFD PWALT+ANADRLLDMRDEE+ LR EEVTGELP +LEYEEF+E+REQL Sbjct: 301 RLRQSVQSYFDNPWALTFANADRLLDMRDEELTLRSEEVTGELPPELEYEEFSEMREQLI 360 Query: 360 AIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFTGLP 419 A++E+ L YK +Q+PLDL V+REYL+QYPR+RHFDVARIV+DQAVRLGVA DFTGLP Sbjct: 361 ALVEQALHKYKAQQIPLDLSEVMREYLAQYPRSRHFDVARIVVDQAVRLGVADTDFTGLP 420 Query: 420 AKWQPINDYGAKVQAHVIDKY 440 A WQ IN+YGAKVQAHVIDKY Sbjct: 421 ALWQAINEYGAKVQAHVIDKY 441 >UniRef50_Q65TL7 Chromosome partition protein mukF n=96 Tax=Gammaproteobacteria RepID=MUKF_MANSM Length = 445 Score = 623 bits (1606), Expect = e-177, Method: Compositional matrix adjust. Identities = 294/444 (66%), Positives = 367/444 (82%), Gaps = 4/444 (0%) Query: 1 MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVS 60 M E SQT+PELV+WA++ +FS++LP +RL+FLLA+A N ER DGEM E +LVD FRHVS Sbjct: 1 MLETSQTIPELVSWAKEREFSLNLPTERLAFLLAIAIYNAERFDGEMVESDLVDIFRHVS 60 Query: 61 DAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF 120 + FEQ+ ETI RANNAIN++V+QR LNRF+SE E +IYRLTPLG+G++DYYIRQREF Sbjct: 61 NEFEQSKETIATRANNAINELVKQRFLNRFSSEFTESLSIYRLTPLGVGVSDYYIRQREF 120 Query: 121 STLRLSMQLSIVAGELKRAADAAEEGG----DEFHWHRNVYAPLKYSVAEIFDSIDLTQR 176 S LRLS+QL+IVA E++RA++ AEEG DE++W RNV+APLKYSVAEIFDSIDL+QR Sbjct: 121 SALRLSVQLAIVANEIQRASELAEEGTAKQEDEYYWRRNVFAPLKYSVAEIFDSIDLSQR 180 Query: 177 LMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI 236 +MDE QQ +K++IA+LL KDW+AAI+SCE LL ETSG LRELQDTL AAGDKLQ LLRI Sbjct: 181 IMDENQQSIKEEIAELLTKDWQAAIASCERLLDETSGNLRELQDTLNAAGDKLQEQLLRI 240 Query: 237 QDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRV 296 QD + DDL+F+D+L+ DLQ+KLDRIISWGQQ+IDLWIGYDRHVHKFIRTAIDMDKNRV Sbjct: 241 QDCVIGRDDLYFIDQLITDLQAKLDRIISWGQQAIDLWIGYDRHVHKFIRTAIDMDKNRV 300 Query: 297 FAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIRE 356 F+QRLRQS+ YFD PW L A A+RL+D+RDEE+ALRDE+ GELPE+LEYE+ +++ + Sbjct: 301 FSQRLRQSIHNYFDMPWYLWTAQAERLIDLRDEELALRDEDALGELPEELEYEQLSDLHD 360 Query: 357 QLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFT 416 Q+ ++ L + R P+DL LV++E L YP ARHFDVARI++DQAVRLG+A AD + Sbjct: 361 QIVDYMQNLLIAQRERNQPIDLSLVLKEQLEGYPLARHFDVARIIVDQAVRLGMASADLS 420 Query: 417 GLPAKWQPINDYGAKVQAHVIDKY 440 G +WQ IN+ GA+VQAHVID+Y Sbjct: 421 GTYPQWQEINNRGAEVQAHVIDEY 444 >UniRef50_B7VMH0 Chromosome partition protein mukF n=179 Tax=Gammaproteobacteria RepID=MUKF_VIBSL Length = 445 Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust. Identities = 270/445 (60%), Positives = 346/445 (77%), Gaps = 5/445 (1%) Query: 1 MSEFSQT-----VPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDA 55 MSE +QT + ELV W +++DFS++LP +RL+FL+A+A L+ ER D E+ EGEL DA Sbjct: 1 MSEMTQTAEEQPIDELVGWVKQHDFSLNLPPERLAFLIAIAVLSNERFDEELGEGELHDA 60 Query: 56 FRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYI 115 F V+ FE T E RANNAIN++V+Q+L++RFTSE +G +IYRL+PL IGI+DYY+ Sbjct: 61 FTIVTRLFEDTGEASAFRANNAINELVKQKLISRFTSEITDGASIYRLSPLAIGISDYYL 120 Query: 116 RQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQ 175 R R+FS L+LS+QLS+VA E+ +A +AA++GG HW RNVY LKYSV EIFD IDL Q Sbjct: 121 RHRQFSKLKLSIQLSMVADEMAKAIEAAQKGGTPGHWRRNVYGVLKYSVGEIFDQIDLNQ 180 Query: 176 RLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLR 235 R+MDEQQQ VK IA LLNKDWR AI++CE LLSETS TL+ELQDTL+AAGD+LQ +L Sbjct: 181 RVMDEQQQTVKQQIADLLNKDWREAINNCESLLSETSATLKELQDTLQAAGDELQTQILD 240 Query: 236 IQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNR 295 IQ+ D+L FV +F LQ KLDRI SWGQQ+IDLWIGYDRHVHKFIRTAIDMDKNR Sbjct: 241 IQEIVYGDDELEFVGETLFGLQMKLDRITSWGQQAIDLWIGYDRHVHKFIRTAIDMDKNR 300 Query: 296 VFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIR 355 F+QRLRQSV YFD PW LTYA+A++L D+RDE + LRD+EV G+ P D+EYEEF ++ Sbjct: 301 AFSQRLRQSVTDYFDAPWLLTYADAEKLTDLRDEALVLRDDEVMGQAPIDVEYEEFEQVN 360 Query: 356 EQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADF 415 + L+ I + L +K + P+DLGLV+R+YL+ +PR HFD+ARIV+DQAVRLG +++D+ Sbjct: 361 DLLSERIGDMLKAHKQQGAPIDLGLVLRDYLAAHPRTHHFDLARIVVDQAVRLGYSESDY 420 Query: 416 TGLPAKWQPINDYGAKVQAHVIDKY 440 + WQ IND+GAKVQA+VI+KY Sbjct: 421 QAIQPDWQAINDFGAKVQANVINKY 445 >UniRef50_A9G7H5 MukF protein n=2 Tax=Proteobacteria RepID=A9G7H5_SORC5 Length = 441 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 133/285 (46%), Gaps = 7/285 (2%) Query: 49 EGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGI 108 E LVD F V D + +E RA +AI + QR+L R Y LT L Sbjct: 54 EDALVDLFEQVCDVVDPGAENPRKRATHAIQRLREQRMLARVDGAGLVRAGEYALTRLAA 113 Query: 109 GITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIF 168 + +Y++ + L++ + +L AA + + W V PL+ +VA++ Sbjct: 114 AVVEYFLADEALTRESLTLLTGTLRAQLAEILAAARKAEGDGAWRAEVAGPLRVTVADLV 173 Query: 169 DSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDK 228 I+ QR +D QQ++V+ +IA LL+ DW +A+ C+ LL +GTLREL + L Sbjct: 174 AGIERRQRGLDAQQEEVQAEIATLLSADWFSAVDGCQGLLDAMAGTLRELNEILLRDTHH 233 Query: 229 LQANLLRIQ---DATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFI 285 A L IQ A D R++ +DRI +WG W Y ++VH+++ Sbjct: 234 FVALLQEIQALATAASNADAEATAQRMI----EHVDRIAAWGAARQRAWSEYYQYVHRYL 289 Query: 286 RTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEE 330 R + +D R +QRLR + + P+ L A A + +R E Sbjct: 290 RDVVRLDPERALSQRLRDQLAAWPSRPFHLVTARAPSIRLLRPLE 334 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q6D445 Chromosome partition protein mukF n=8 Tax=Gammap... 666 0.0 UniRef50_B7VMH0 Chromosome partition protein mukF n=179 Tax=Gamm... 661 0.0 UniRef50_Q65TL7 Chromosome partition protein mukF n=96 Tax=Gamma... 654 0.0 UniRef50_A9G7H5 MukF protein n=2 Tax=Proteobacteria RepID=A9G7H5... 359 1e-97 Sequences not found previously or not previously below threshold: UniRef50_A9MTC8 Putative uncharacterized protein n=1 Tax=Salmone... 72 5e-11 UniRef50_A0KX06 Putative uncharacterized protein n=1 Tax=Shewane... 70 1e-10 UniRef50_Q1VBQ0 Putative uncharacterized protein n=1 Tax=Vibrio ... 64 1e-08 UniRef50_A9UQJ6 Predicted protein n=1 Tax=Monosiga brevicollis R... 44 0.009 UniRef50_D0LJJ0 Pyridoxal-dependent decarboxylase n=1 Tax=Halian... 44 0.009 UniRef50_Q4RH39 Chromosome undetermined SCAF15069, whole genome ... 44 0.014 >UniRef50_Q6D445 Chromosome partition protein mukF n=8 Tax=Gammaproteobacteria RepID=MUKF_ERWCT Length = 441 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 369/441 (83%), Positives = 407/441 (92%), Gaps = 1/441 (0%) Query: 1 MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVS 60 MS+FSQTVPELVAWARKNDFSISLP +RL+FL+A+ATLNGER+DGEMSEGEL+DAFRHVS Sbjct: 1 MSDFSQTVPELVAWARKNDFSISLPTERLAFLMAIATLNGERMDGEMSEGELIDAFRHVS 60 Query: 61 DAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF 120 F+QTSETI +RANNAIND+VRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF Sbjct: 61 QGFDQTSETITIRANNAINDLVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF 120 Query: 121 STLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDE 180 STLRLSMQLSIVA EL RAADAAEE GDEFHWHRNV+APLKYSVAEIFDSIDL+QR+MDE Sbjct: 121 STLRLSMQLSIVAQELSRAADAAEEDGDEFHWHRNVFAPLKYSVAEIFDSIDLSQRVMDE 180 Query: 181 QQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDAT 240 QQQ VKDDIA LLN+DWRAAISSCE LL+ETS TLRELQDTLEAAGDKLQ +LL IQD Sbjct: 181 QQQGVKDDIAALLNQDWRAAISSCEQLLTETSSTLRELQDTLEAAGDKLQTSLLSIQDTI 240 Query: 241 MTH-DDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQ 299 M + +L FVD+LVFDLQ+KLDRI+SWGQQ+IDLWIGYDRHVHKFIRTAIDMDKNRVFAQ Sbjct: 241 MNNPHNLEFVDKLVFDLQNKLDRIVSWGQQTIDLWIGYDRHVHKFIRTAIDMDKNRVFAQ 300 Query: 300 RLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIREQLA 359 RLRQSVQ+YFD PWALT+ANADRLLDMRDEE+ LR EEVTGELP +LEYEEF+E+REQL Sbjct: 301 RLRQSVQSYFDNPWALTFANADRLLDMRDEELTLRSEEVTGELPPELEYEEFSEMREQLI 360 Query: 360 AIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFTGLP 419 A++E+ L YK +Q+PLDL V+REYL+QYPR+RHFDVARIV+DQAVRLGVA DFTGLP Sbjct: 361 ALVEQALHKYKAQQIPLDLSEVMREYLAQYPRSRHFDVARIVVDQAVRLGVADTDFTGLP 420 Query: 420 AKWQPINDYGAKVQAHVIDKY 440 A WQ IN+YGAKVQAHVIDKY Sbjct: 421 ALWQAINEYGAKVQAHVIDKY 441 >UniRef50_B7VMH0 Chromosome partition protein mukF n=179 Tax=Gammaproteobacteria RepID=MUKF_VIBSL Length = 445 Score = 661 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 270/445 (60%), Positives = 346/445 (77%), Gaps = 5/445 (1%) Query: 1 MSEFSQT-----VPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDA 55 MSE +QT + ELV W +++DFS++LP +RL+FL+A+A L+ ER D E+ EGEL DA Sbjct: 1 MSEMTQTAEEQPIDELVGWVKQHDFSLNLPPERLAFLIAIAVLSNERFDEELGEGELHDA 60 Query: 56 FRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYI 115 F V+ FE T E RANNAIN++V+Q+L++RFTSE +G +IYRL+PL IGI+DYY+ Sbjct: 61 FTIVTRLFEDTGEASAFRANNAINELVKQKLISRFTSEITDGASIYRLSPLAIGISDYYL 120 Query: 116 RQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQ 175 R R+FS L+LS+QLS+VA E+ +A +AA++GG HW RNVY LKYSV EIFD IDL Q Sbjct: 121 RHRQFSKLKLSIQLSMVADEMAKAIEAAQKGGTPGHWRRNVYGVLKYSVGEIFDQIDLNQ 180 Query: 176 RLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLR 235 R+MDEQQQ VK IA LLNKDWR AI++CE LLSETS TL+ELQDTL+AAGD+LQ +L Sbjct: 181 RVMDEQQQTVKQQIADLLNKDWREAINNCESLLSETSATLKELQDTLQAAGDELQTQILD 240 Query: 236 IQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNR 295 IQ+ D+L FV +F LQ KLDRI SWGQQ+IDLWIGYDRHVHKFIRTAIDMDKNR Sbjct: 241 IQEIVYGDDELEFVGETLFGLQMKLDRITSWGQQAIDLWIGYDRHVHKFIRTAIDMDKNR 300 Query: 296 VFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIR 355 F+QRLRQSV YFD PW LTYA+A++L D+RDE + LRD+EV G+ P D+EYEEF ++ Sbjct: 301 AFSQRLRQSVTDYFDAPWLLTYADAEKLTDLRDEALVLRDDEVMGQAPIDVEYEEFEQVN 360 Query: 356 EQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADF 415 + L+ I + L +K + P+DLGLV+R+YL+ +PR HFD+ARIV+DQAVRLG +++D+ Sbjct: 361 DLLSERIGDMLKAHKQQGAPIDLGLVLRDYLAAHPRTHHFDLARIVVDQAVRLGYSESDY 420 Query: 416 TGLPAKWQPINDYGAKVQAHVIDKY 440 + WQ IND+GAKVQA+VI+KY Sbjct: 421 QAIQPDWQAINDFGAKVQANVINKY 445 >UniRef50_Q65TL7 Chromosome partition protein mukF n=96 Tax=Gammaproteobacteria RepID=MUKF_MANSM Length = 445 Score = 654 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 294/444 (66%), Positives = 367/444 (82%), Gaps = 4/444 (0%) Query: 1 MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVS 60 M E SQT+PELV+WA++ +FS++LP +RL+FLLA+A N ER DGEM E +LVD FRHVS Sbjct: 1 MLETSQTIPELVSWAKEREFSLNLPTERLAFLLAIAIYNAERFDGEMVESDLVDIFRHVS 60 Query: 61 DAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF 120 + FEQ+ ETI RANNAIN++V+QR LNRF+SE E +IYRLTPLG+G++DYYIRQREF Sbjct: 61 NEFEQSKETIATRANNAINELVKQRFLNRFSSEFTESLSIYRLTPLGVGVSDYYIRQREF 120 Query: 121 STLRLSMQLSIVAGELKRAADAAEEG----GDEFHWHRNVYAPLKYSVAEIFDSIDLTQR 176 S LRLS+QL+IVA E++RA++ AEEG DE++W RNV+APLKYSVAEIFDSIDL+QR Sbjct: 121 SALRLSVQLAIVANEIQRASELAEEGTAKQEDEYYWRRNVFAPLKYSVAEIFDSIDLSQR 180 Query: 177 LMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI 236 +MDE QQ +K++IA+LL KDW+AAI+SCE LL ETSG LRELQDTL AAGDKLQ LLRI Sbjct: 181 IMDENQQSIKEEIAELLTKDWQAAIASCERLLDETSGNLRELQDTLNAAGDKLQEQLLRI 240 Query: 237 QDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRV 296 QD + DDL+F+D+L+ DLQ+KLDRIISWGQQ+IDLWIGYDRHVHKFIRTAIDMDKNRV Sbjct: 241 QDCVIGRDDLYFIDQLITDLQAKLDRIISWGQQAIDLWIGYDRHVHKFIRTAIDMDKNRV 300 Query: 297 FAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIRE 356 F+QRLRQS+ YFD PW L A A+RL+D+RDEE+ALRDE+ GELPE+LEYE+ +++ + Sbjct: 301 FSQRLRQSIHNYFDMPWYLWTAQAERLIDLRDEELALRDEDALGELPEELEYEQLSDLHD 360 Query: 357 QLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFT 416 Q+ ++ L + R P+DL LV++E L YP ARHFDVARI++DQAVRLG+A AD + Sbjct: 361 QIVDYMQNLLIAQRERNQPIDLSLVLKEQLEGYPLARHFDVARIIVDQAVRLGMASADLS 420 Query: 417 GLPAKWQPINDYGAKVQAHVIDKY 440 G +WQ IN+ GA+VQAHVID+Y Sbjct: 421 GTYPQWQEINNRGAEVQAHVIDEY 444 >UniRef50_A9G7H5 MukF protein n=2 Tax=Proteobacteria RepID=A9G7H5_SORC5 Length = 441 Score = 359 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 146/323 (45%), Gaps = 7/323 (2%) Query: 11 LVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSETI 70 ++A ++ ++ L L FL + + E LVD F V D + +E Sbjct: 16 VIAALARDRVTLDLKTVDLCFLAGLYLRADKAALASFEEDALVDLFEQVCDVVDPGAENP 75 Query: 71 GVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREFSTLRLSMQLS 130 RA +AI + QR+L R Y LT L + +Y++ + L++ Sbjct: 76 RKRATHAIQRLREQRMLARVDGAGLVRAGEYALTRLAAAVVEYFLADEALTRESLTLLTG 135 Query: 131 IVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIA 190 + +L AA + + W V PL+ +VA++ I+ QR +D QQ++V+ +IA Sbjct: 136 TLRAQLAEILAAARKAEGDGAWRAEVAGPLRVTVADLVAGIERRQRGLDAQQEEVQAEIA 195 Query: 191 QLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQ---DATMTHDDLH 247 LL+ DW +A+ C+ LL +GTLREL + L A L IQ A D Sbjct: 196 TLLSADWFSAVDGCQGLLDAMAGTLRELNEILLRDTHHFVALLQEIQALATAASNADAEA 255 Query: 248 FVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQRLRQSVQT 307 R++ +DRI +WG W Y ++VH+++R + +D R +QRLR + Sbjct: 256 TAQRMI----EHVDRIAAWGAARQRAWSEYYQYVHRYLRDVVRLDPERALSQRLRDQLAA 311 Query: 308 YFDEPWALTYANADRLLDMRDEE 330 + P+ L A A + +R E Sbjct: 312 WPSRPFHLVTARAPSIRLLRPLE 334 >UniRef50_A9MTC8 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 RepID=A9MTC8_SALPB Length = 466 Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 79/455 (17%), Positives = 168/455 (36%), Gaps = 47/455 (10%) Query: 3 EFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMS-----------EGE 51 +F+ + ++ K ++ L + S+L A+A E E + E Sbjct: 10 QFTSPLSCILLKISKYQPNLHLTPNEFSYLAAMAMWGMEESGVESNSEHYFVQSGYDETT 69 Query: 52 LVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGIT 111 R+V + + T VR NN + + Q LL+ A+ YRLT L + Sbjct: 70 CHSIIRYVDERINEDPNTSDVRVNNFLKRALEQGLLSLAGMSVADVGGTYRLTQLAHDLL 129 Query: 112 DYYIRQREFS-TLRLSMQLSIVAGELKRAADAAEEGG--DEFHW--HRNVYAPLKYSVAE 166 + + E LS + + EL + +A G + W ++ P S+ + Sbjct: 130 KPFQQSDELEDKETLSQRYLRIDQELS-SLNADRNGEKITDSEWLVKVELFLP---SLKD 185 Query: 167 IFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAG 226 + + Q + + ++ +I + I ++ +G + +L+ + Sbjct: 186 LLTGVFKNQEFLISKFHSMRSEIQTEIGISLEMEIQQLLEIIRTLAGQINDLRMLVMNRA 245 Query: 227 DKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIR 286 D + L +Q+ + + + L L + + S+ G+ V IR Sbjct: 246 DAVLMQLEILQNTVVQKGGAQRLKNTLSSLFGSLMDVREFANHSLRDLSGFFSSVLDRIR 305 Query: 287 TAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMR---------DEEMAL---R 334 I +D N + ++++ + W+L + +L+ +R D + L Sbjct: 306 IRIALDPNANLGYLIDRTIELFGRSSWSLALPSTVKLMQLREWDTPPPPADNALFLDDND 365 Query: 335 DEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYP--RA 392 DEE+ E+P + E F +E+ L + P+ V+R LS++P Sbjct: 366 DEELVREMPA-FQLESFAR------EFVEKAL----SDNKPVSNVSVIRNILSKFPFNET 414 Query: 393 RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPIND 427 F +A+ I + ++ + + +W +++ Sbjct: 415 DRFRLAQCTIKELMK--QSDNIQDDISPEWVLMDE 447 >UniRef50_A0KX06 Putative uncharacterized protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0KX06_SHESA Length = 352 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 63/346 (18%), Positives = 125/346 (36%), Gaps = 10/346 (2%) Query: 99 AIYRLTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYA 158 YRLT L + + LS + V E+ + D+ W + A Sbjct: 12 GFYRLTQLSHDLLKPFTGDTLIQKESLSQRY--VRLEILLGNLLVLKIEDDEEWANEIKA 69 Query: 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218 L S ++ D I+ Q + + Q + I + + L+ E +G +R+L Sbjct: 70 QLP-SFRDLLDGINKNQEALIKGFQLQRSSIQSAASGSLAQQMQHLIELIDEIAGQIRDL 128 Query: 219 QDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYD 278 + + D + + L I++ + + + D+ +LD I + S+ + Sbjct: 129 KSLILNGADNVLSLLHEIKEMAHNRNAPIRLTNAMADIHDQLDSIRQFSGHSLLELAEFF 188 Query: 279 RHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEV 338 V IR I +D N + ++V PW+++ D ++++RD E E Sbjct: 189 EQVLSTIRLKITLDPNANLNLLIEKAVLQMDRMPWSISILAPDPVVELRDWEAPPPPLEN 248 Query: 339 TGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYP---RARHF 395 D E + L + + +A +D+ V + LS + RH Sbjct: 249 ELPNDGDPEVILRKTPSDYLEKLAKGLVARMYESDNEVDISKVADQILSNEEFQYKDRH- 307 Query: 396 DVARIVIDQAVRLGVAQADFTGLPAKW-QPINDYGAKVQAHVIDKY 440 + + D+ ++ G +W Q +D +++ KY Sbjct: 308 RLLFFIFDELIKNG--DWTRPAYHPEWVQLAHDNNVEIEQQWFKKY 351 >UniRef50_Q1VBQ0 Putative uncharacterized protein n=1 Tax=Vibrio alginolyticus 12G01 RepID=Q1VBQ0_VIBAL Length = 477 Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 72/396 (18%), Positives = 146/396 (36%), Gaps = 21/396 (5%) Query: 41 ERLDGEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAI 100 + D E G R+V + + R +N + V QRL+ + + + Sbjct: 75 QSFDEETVRG----IVRYVDNYAGREEGYTDSRVSNLLKWGVEQRLMTLAGTSVRDEDPQ 130 Query: 101 YRLTPLGIGITDYYIRQREF-STLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAP 159 YRLT L + Y +F LS + + L A E + W +V + Sbjct: 131 YRLTQLAHDLLKPYFNDDDFDQQESLSQRYKRIEVLLGELN--AIEVEEPQAWFESVRSY 188 Query: 160 LKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQ 219 L ++ ++ + + Q L+ Q + DI + + +++ L E + +L+ Sbjct: 189 LP-TLKDLLEGVSKNQELLIAQFGNERQDITKQITNSIVEDMTALLLFADELMKQINDLK 247 Query: 220 DTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDR 279 + D++ L +Q + + +++ L+R + S+ + + Sbjct: 248 TLILIGADQVLMQLAVLQQTAAARSAPSRLQSGLEEIEVFLERTCEFANMSLIDLVSFLE 307 Query: 280 HVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVT 339 + + IR + +D N +Q + +++ W L +R L MR E + V Sbjct: 308 RLMQNIRLRLTLDPNANLSQLIDSAIELTRGNSWGLALPFQERCLQMR--EWSPPPPPVD 365 Query: 340 GELPEDLEYEEFNEIR--------EQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPR 391 LP LE E + +R E I+E +L ++P L +++ + + Sbjct: 366 DSLPV-LEAEGAHVVRQNPTHLLQELANQIVERELDSKHRIELPDLLSRILKPQDNGFNE 424 Query: 392 ARHFDVARIVIDQAVRLGVAQADFTGLPAKWQPIND 427 A +A + + D + W PI+D Sbjct: 425 ADRHRLAVLTLKTITSKAPMPGD--QVQPGWVPIDD 458 >UniRef50_A9UQJ6 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UQJ6_MONBE Length = 1248 Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 108/265 (40%), Gaps = 23/265 (8%) Query: 116 RQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYA---PLKYSVAEIFDSID 172 +Q + +L ++S + GEL+ A+ + + + + L+ + A + ++ Sbjct: 415 QQDSATVEKLRGEISALKGELQ-ASKFVQHEQPNWSERQQLEGQLEALQKANASLQADLE 473 Query: 173 LTQRLMDEQQQQVKDDI--AQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQ 230 + Q QV++++ A LN+ ++++ E ++E T+ EL++ L A D LQ Sbjct: 474 AAS-VRPSQMAQVEEELLDAVSLNRALEESVAARETKIAEMEVTMDELRNQLSIAQDCLQ 532 Query: 231 ANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAID 290 R + + + DLQ+ R + +Q+ D + ++ I+ D Sbjct: 533 DEQQRHELTQLK------LTETQTDLQA-AQRATTREKQARDAFEHELLLKNRAIKDLTD 585 Query: 291 -MDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYE 349 + + Q+LR ++ ANADR+ D+R + L D T + + Sbjct: 586 DLQQAHAQRQKLRTQLEQ--------ATANADRVADVRALQQRLEDAHATHRAQMEKKER 637 Query: 350 EFNEIREQLAAIIEEQLAVYKTRQV 374 E + L + + ++R Sbjct: 638 EIKALHNSLLQFQIQLKRIQESRNA 662 >UniRef50_D0LJJ0 Pyridoxal-dependent decarboxylase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJJ0_HALO1 Length = 529 Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 2/113 (1%) Query: 315 LTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQV 374 + ++N + DEE+ DE+ T E P + E F ++ +L I ++ + R V Sbjct: 1 MIFSNCELPALFSDEELDF-DEDFTREAPASIAPERFRDMGHRLVDRISGHMSGMRERPV 59 Query: 375 PLDLGL-VVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFTGLPAKWQPIN 426 GL VRE L P A V+++A L + + T P W ++ Sbjct: 60 AKQHGLETVREALGSMPLPESGMAAEEVLERATSLLMEHSVMTAHPRFWAYVH 112 >UniRef50_Q4RH39 Chromosome undetermined SCAF15069, whole genome shotgun sequence. (Fragment) n=5 Tax=Tetraodontidae RepID=Q4RH39_TETNG Length = 752 Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 16/159 (10%) Query: 153 HRNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDW-RAAISSCELLLSET 211 RNV + L+ +V + + Q + E QQ + ++A K+W + + + ++L + Sbjct: 224 QRNVLSTLQKTVEDTSQVVQKLQNVYQELQQTARQNLAD---KEWLKEKVQNLQVLAANN 280 Query: 212 SGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSI 271 S +R + LE+ G +L + +IQ+ + + L R + D Q D I S Sbjct: 281 SALVRFNGEALESLGFQLGKLVNKIQNTSALTEGLEQSLRELMDHQRDHDNITS------ 334 Query: 272 DLWIGYDRHVHKFIRTAIDMDK---NRVFAQRLRQSVQT 307 +D + R DMD+ N F+ ++ ++ + Sbjct: 335 ---SKFDNMEVRLDRHEYDMDRLTGNLSFSAQVLGTITS 370 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q6D445 Chromosome partition protein mukF n=8 Tax=Gammap... 543 e-153 UniRef50_B7VMH0 Chromosome partition protein mukF n=179 Tax=Gamm... 541 e-152 UniRef50_Q65TL7 Chromosome partition protein mukF n=96 Tax=Gamma... 529 e-148 UniRef50_A9MTC8 Putative uncharacterized protein n=1 Tax=Salmone... 413 e-114 UniRef50_Q1VBQ0 Putative uncharacterized protein n=1 Tax=Vibrio ... 371 e-101 UniRef50_A0KX06 Putative uncharacterized protein n=1 Tax=Shewane... 344 3e-93 UniRef50_A9G7H5 MukF protein n=2 Tax=Proteobacteria RepID=A9G7H5... 344 5e-93 Sequences not found previously or not previously below threshold: UniRef50_C8X2Y0 Putative uncharacterized protein n=1 Tax=Desulfo... 47 0.002 UniRef50_C6J1G9 Methyl-accepting chemotaxis sensory transducer n... 44 0.014 UniRef50_C5L5J0 Kinesin-II 95 kDa subunit, putative n=4 Tax=Perk... 41 0.067 >UniRef50_Q6D445 Chromosome partition protein mukF n=8 Tax=Gammaproteobacteria RepID=MUKF_ERWCT Length = 441 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 369/441 (83%), Positives = 407/441 (92%), Gaps = 1/441 (0%) Query: 1 MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVS 60 MS+FSQTVPELVAWARKNDFSISLP +RL+FL+A+ATLNGER+DGEMSEGEL+DAFRHVS Sbjct: 1 MSDFSQTVPELVAWARKNDFSISLPTERLAFLMAIATLNGERMDGEMSEGELIDAFRHVS 60 Query: 61 DAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF 120 F+QTSETI +RANNAIND+VRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF Sbjct: 61 QGFDQTSETITIRANNAINDLVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF 120 Query: 121 STLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDE 180 STLRLSMQLSIVA EL RAADAAEE GDEFHWHRNV+APLKYSVAEIFDSIDL+QR+MDE Sbjct: 121 STLRLSMQLSIVAQELSRAADAAEEDGDEFHWHRNVFAPLKYSVAEIFDSIDLSQRVMDE 180 Query: 181 QQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDAT 240 QQQ VKDDIA LLN+DWRAAISSCE LL+ETS TLRELQDTLEAAGDKLQ +LL IQD Sbjct: 181 QQQGVKDDIAALLNQDWRAAISSCEQLLTETSSTLRELQDTLEAAGDKLQTSLLSIQDTI 240 Query: 241 MTH-DDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQ 299 M + +L FVD+LVFDLQ+KLDRI+SWGQQ+IDLWIGYDRHVHKFIRTAIDMDKNRVFAQ Sbjct: 241 MNNPHNLEFVDKLVFDLQNKLDRIVSWGQQTIDLWIGYDRHVHKFIRTAIDMDKNRVFAQ 300 Query: 300 RLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIREQLA 359 RLRQSVQ+YFD PWALT+ANADRLLDMRDEE+ LR EEVTGELP +LEYEEF+E+REQL Sbjct: 301 RLRQSVQSYFDNPWALTFANADRLLDMRDEELTLRSEEVTGELPPELEYEEFSEMREQLI 360 Query: 360 AIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFTGLP 419 A++E+ L YK +Q+PLDL V+REYL+QYPR+RHFDVARIV+DQAVRLGVA DFTGLP Sbjct: 361 ALVEQALHKYKAQQIPLDLSEVMREYLAQYPRSRHFDVARIVVDQAVRLGVADTDFTGLP 420 Query: 420 AKWQPINDYGAKVQAHVIDKY 440 A WQ IN+YGAKVQAHVIDKY Sbjct: 421 ALWQAINEYGAKVQAHVIDKY 441 >UniRef50_B7VMH0 Chromosome partition protein mukF n=179 Tax=Gammaproteobacteria RepID=MUKF_VIBSL Length = 445 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 269/445 (60%), Positives = 345/445 (77%), Gaps = 5/445 (1%) Query: 1 MSEFSQ-----TVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDA 55 MSE +Q + ELV W +++DFS++LP +RL+FL+A+A L+ ER D E+ EGEL DA Sbjct: 1 MSEMTQTAEEQPIDELVGWVKQHDFSLNLPPERLAFLIAIAVLSNERFDEELGEGELHDA 60 Query: 56 FRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYI 115 F V+ FE T E RANNAIN++V+Q+L++RFTSE +G +IYRL+PL IGI+DYY+ Sbjct: 61 FTIVTRLFEDTGEASAFRANNAINELVKQKLISRFTSEITDGASIYRLSPLAIGISDYYL 120 Query: 116 RQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQ 175 R R+FS L+LS+QLS+VA E+ +A +AA++GG HW RNVY LKYSV EIFD IDL Q Sbjct: 121 RHRQFSKLKLSIQLSMVADEMAKAIEAAQKGGTPGHWRRNVYGVLKYSVGEIFDQIDLNQ 180 Query: 176 RLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLR 235 R+MDEQQQ VK IA LLNKDWR AI++CE LLSETS TL+ELQDTL+AAGD+LQ +L Sbjct: 181 RVMDEQQQTVKQQIADLLNKDWREAINNCESLLSETSATLKELQDTLQAAGDELQTQILD 240 Query: 236 IQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNR 295 IQ+ D+L FV +F LQ KLDRI SWGQQ+IDLWIGYDRHVHKFIRTAIDMDKNR Sbjct: 241 IQEIVYGDDELEFVGETLFGLQMKLDRITSWGQQAIDLWIGYDRHVHKFIRTAIDMDKNR 300 Query: 296 VFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIR 355 F+QRLRQSV YFD PW LTYA+A++L D+RDE + LRD+EV G+ P D+EYEEF ++ Sbjct: 301 AFSQRLRQSVTDYFDAPWLLTYADAEKLTDLRDEALVLRDDEVMGQAPIDVEYEEFEQVN 360 Query: 356 EQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADF 415 + L+ I + L +K + P+DLGLV+R+YL+ +PR HFD+ARIV+DQAVRLG +++D+ Sbjct: 361 DLLSERIGDMLKAHKQQGAPIDLGLVLRDYLAAHPRTHHFDLARIVVDQAVRLGYSESDY 420 Query: 416 TGLPAKWQPINDYGAKVQAHVIDKY 440 + WQ IND+GAKVQA+VI+KY Sbjct: 421 QAIQPDWQAINDFGAKVQANVINKY 445 >UniRef50_Q65TL7 Chromosome partition protein mukF n=96 Tax=Gammaproteobacteria RepID=MUKF_MANSM Length = 445 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 294/444 (66%), Positives = 367/444 (82%), Gaps = 4/444 (0%) Query: 1 MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVS 60 M E SQT+PELV+WA++ +FS++LP +RL+FLLA+A N ER DGEM E +LVD FRHVS Sbjct: 1 MLETSQTIPELVSWAKEREFSLNLPTERLAFLLAIAIYNAERFDGEMVESDLVDIFRHVS 60 Query: 61 DAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF 120 + FEQ+ ETI RANNAIN++V+QR LNRF+SE E +IYRLTPLG+G++DYYIRQREF Sbjct: 61 NEFEQSKETIATRANNAINELVKQRFLNRFSSEFTESLSIYRLTPLGVGVSDYYIRQREF 120 Query: 121 STLRLSMQLSIVAGELKRAADAAEEG----GDEFHWHRNVYAPLKYSVAEIFDSIDLTQR 176 S LRLS+QL+IVA E++RA++ AEEG DE++W RNV+APLKYSVAEIFDSIDL+QR Sbjct: 121 SALRLSVQLAIVANEIQRASELAEEGTAKQEDEYYWRRNVFAPLKYSVAEIFDSIDLSQR 180 Query: 177 LMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI 236 +MDE QQ +K++IA+LL KDW+AAI+SCE LL ETSG LRELQDTL AAGDKLQ LLRI Sbjct: 181 IMDENQQSIKEEIAELLTKDWQAAIASCERLLDETSGNLRELQDTLNAAGDKLQEQLLRI 240 Query: 237 QDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRV 296 QD + DDL+F+D+L+ DLQ+KLDRIISWGQQ+IDLWIGYDRHVHKFIRTAIDMDKNRV Sbjct: 241 QDCVIGRDDLYFIDQLITDLQAKLDRIISWGQQAIDLWIGYDRHVHKFIRTAIDMDKNRV 300 Query: 297 FAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIRE 356 F+QRLRQS+ YFD PW L A A+RL+D+RDEE+ALRDE+ GELPE+LEYE+ +++ + Sbjct: 301 FSQRLRQSIHNYFDMPWYLWTAQAERLIDLRDEELALRDEDALGELPEELEYEQLSDLHD 360 Query: 357 QLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFT 416 Q+ ++ L + R P+DL LV++E L YP ARHFDVARI++DQAVRLG+A AD + Sbjct: 361 QIVDYMQNLLIAQRERNQPIDLSLVLKEQLEGYPLARHFDVARIIVDQAVRLGMASADLS 420 Query: 417 GLPAKWQPINDYGAKVQAHVIDKY 440 G +WQ IN+ GA+VQAHVID+Y Sbjct: 421 GTYPQWQEINNRGAEVQAHVIDEY 444 >UniRef50_A9MTC8 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 RepID=A9MTC8_SALPB Length = 466 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 74/453 (16%), Positives = 167/453 (36%), Gaps = 22/453 (4%) Query: 3 EFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMS-----------EGE 51 +F+ + ++ K ++ L + S+L A+A E E + E Sbjct: 10 QFTSPLSCILLKISKYQPNLHLTPNEFSYLAAMAMWGMEESGVESNSEHYFVQSGYDETT 69 Query: 52 LVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGIT 111 R+V + + T VR NN + + Q LL+ A+ YRLT L + Sbjct: 70 CHSIIRYVDERINEDPNTSDVRVNNFLKRALEQGLLSLAGMSVADVGGTYRLTQLAHDLL 129 Query: 112 DYYIRQREFS-TLRLSMQLSIVAGELKRAADAAEEGG--DEFHWHRNVYAPLKYSVAEIF 168 + + E LS + + EL + +A G + W V L S+ ++ Sbjct: 130 KPFQQSDELEDKETLSQRYLRIDQELS-SLNADRNGEKITDSEWLVKVELFLP-SLKDLL 187 Query: 169 DSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDK 228 + Q + + ++ +I + I ++ +G + +L+ + D Sbjct: 188 TGVFKNQEFLISKFHSMRSEIQTEIGISLEMEIQQLLEIIRTLAGQINDLRMLVMNRADA 247 Query: 229 LQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTA 288 + L +Q+ + + + L L + + S+ G+ V IR Sbjct: 248 VLMQLEILQNTVVQKGGAQRLKNTLSSLFGSLMDVREFANHSLRDLSGFFSSVLDRIRIR 307 Query: 289 IDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEY 348 I +D N + ++++ + W+L + +L+ +R+ + + L ++ + Sbjct: 308 IALDPNANLGYLIDRTIELFGRSSWSLALPSTVKLMQLREWDTPPPPADNALFLDDNDDE 367 Query: 349 EE-FNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYP--RARHFDVARIVIDQA 405 E QL + E + + P+ V+R LS++P F +A+ I + Sbjct: 368 ELVREMPAFQLESFAREFVEKALSDNKPVSNVSVIRNILSKFPFNETDRFRLAQCTIKEL 427 Query: 406 VRLGVAQADFTGLPAKWQPINDY-GAKVQAHVI 437 ++ + + +W +++ +++ + Sbjct: 428 MK--QSDNIQDDISPEWVLMDESANYEIEEQWL 458 >UniRef50_Q1VBQ0 Putative uncharacterized protein n=1 Tax=Vibrio alginolyticus 12G01 RepID=Q1VBQ0_VIBAL Length = 477 Score = 371 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 76/452 (16%), Positives = 165/452 (36%), Gaps = 24/452 (5%) Query: 3 EFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLD------GEMSEGELVDAF 56 + + +V +L+ + + D+ +L A+ + + D E + Sbjct: 27 QSASSVNQLLNNLLVAGARLEIDPDQYLYLAAIHAWDRDADDTMNLVQQSFDEETVRGIV 86 Query: 57 RHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIR 116 R+V + + R +N + V QRL+ + + + YRLT L + Y Sbjct: 87 RYVDNYAGREEGYTDSRVSNLLKWGVEQRLMTLAGTSVRDEDPQYRLTQLAHDLLKPYFN 146 Query: 117 QREF-STLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQ 175 +F LS + + L A E + W +V + L ++ ++ + + Q Sbjct: 147 DDDFDQQESLSQRYKRIEVLLGELN--AIEVEEPQAWFESVRSYLP-TLKDLLEGVSKNQ 203 Query: 176 RLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLR 235 L+ Q + DI + + +++ L E + +L+ + D++ L Sbjct: 204 ELLIAQFGNERQDITKQITNSIVEDMTALLLFADELMKQINDLKTLILIGADQVLMQLAV 263 Query: 236 IQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNR 295 +Q + + +++ L+R + S+ + + + + IR + +D N Sbjct: 264 LQQTAAARSAPSRLQSGLEEIEVFLERTCEFANMSLIDLVSFLERLMQNIRLRLTLDPNA 323 Query: 296 VFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPEDLEYEEFNEIR 355 +Q + +++ W L +R L MR E + V LP LE E + +R Sbjct: 324 NLSQLIDSAIELTRGNSWGLALPFQERCLQMR--EWSPPPPPVDDSLPV-LEAEGAHVVR 380 Query: 356 --------EQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVR 407 E I+E +L ++P L +++ + + A +A + + Sbjct: 381 QNPTHLLQELANQIVERELDSKHRIELPDLLSRILKPQDNGFNEADRHRLAVLTLKTITS 440 Query: 408 LGVAQADFTGLPAKWQPI-NDYGAKVQAHVID 438 D + W PI +D ++ + Sbjct: 441 KAPMPGDQ--VQPGWVPIDDDNNLYIENIWVQ 470 >UniRef50_A0KX06 Putative uncharacterized protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0KX06_SHESA Length = 352 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 62/354 (17%), Positives = 125/354 (35%), Gaps = 8/354 (2%) Query: 90 FTSEQAEGNAIYRLTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDE 149 S + YRLT L + + LS + V E+ + D+ Sbjct: 3 AGSSLRNADGFYRLTQLSHDLLKPFTGDTLIQKESLSQRY--VRLEILLGNLLVLKIEDD 60 Query: 150 FHWHRNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLS 209 W + A L S ++ D I+ Q + + Q + I + + L+ Sbjct: 61 EEWANEIKAQLP-SFRDLLDGINKNQEALIKGFQLQRSSIQSAASGSLAQQMQHLIELID 119 Query: 210 ETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQ 269 E +G +R+L+ + D + + L I++ + + + D+ +LD I + Sbjct: 120 EIAGQIRDLKSLILNGADNVLSLLHEIKEMAHNRNAPIRLTNAMADIHDQLDSIRQFSGH 179 Query: 270 SIDLWIGYDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDE 329 S+ + V IR I +D N + ++V PW+++ D ++++RD Sbjct: 180 SLLELAEFFEQVLSTIRLKITLDPNANLNLLIEKAVLQMDRMPWSISILAPDPVVELRDW 239 Query: 330 EMALRDEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQ- 388 E E D E + L + + +A +D+ V + LS Sbjct: 240 EAPPPPLENELPNDGDPEVILRKTPSDYLEKLAKGLVARMYESDNEVDISKVADQILSNE 299 Query: 389 -YPRARHFDVARIVIDQAVRLGVAQADFTGLPAKW-QPINDYGAKVQAHVIDKY 440 + + + D+ ++ G +W Q +D +++ KY Sbjct: 300 EFQYKDRHRLLFFIFDELIKNG--DWTRPAYHPEWVQLAHDNNVEIEQQWFKKY 351 >UniRef50_A9G7H5 MukF protein n=2 Tax=Proteobacteria RepID=A9G7H5_SORC5 Length = 441 Score = 344 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 104/436 (23%), Positives = 178/436 (40%), Gaps = 19/436 (4%) Query: 9 PELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSE 68 ++A ++ ++ L L FL + + E LVD F V D + +E Sbjct: 14 SRVIAALARDRVTLDLKTVDLCFLAGLYLRADKAALASFEEDALVDLFEQVCDVVDPGAE 73 Query: 69 TIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREFSTLRLSMQ 128 RA +AI + QR+L R Y LT L + +Y++ + L++ Sbjct: 74 NPRKRATHAIQRLREQRMLARVDGAGLVRAGEYALTRLAAAVVEYFLADEALTRESLTLL 133 Query: 129 LSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDD 188 + +L AA + + W V PL+ +VA++ I+ QR +D QQ++V+ + Sbjct: 134 TGTLRAQLAEILAAARKAEGDGAWRAEVAGPLRVTVADLVAGIERRQRGLDAQQEEVQAE 193 Query: 189 IAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQ---DATMTHDD 245 IA LL+ DW +A+ C+ LL +GTLREL + L A L IQ A D Sbjct: 194 IATLLSADWFSAVDGCQGLLDAMAGTLRELNEILLRDTHHFVALLQEIQALATAASNADA 253 Query: 246 LHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQRLRQSV 305 R++ +DRI +WG W Y ++VH+++R + +D R +QRLR + Sbjct: 254 EATAQRMI----EHVDRIAAWGAARQRAWSEYYQYVHRYLRDVVRLDPERALSQRLRDQL 309 Query: 306 QTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGE---LPEDLEYEEFNEIREQLAAII 362 + P+ L A A + +R E + V + E + + A++ Sbjct: 310 AAWPSRPFHLVTARAPSIRLLRPLEARVERPPVARPRADREAAPAWVEPERLVADIEALV 369 Query: 363 EEQLAVYKTRQVPLDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFTGLPAKW 422 E L + L V L P + + D R +++ W Sbjct: 370 ERAL-----DEGAATLAEVSSRVLPSLPEPVRYAATGRIADAVARRARVRSERER---PW 421 Query: 423 QPINDYGAKVQAHVID 438 P+ D +++ +D Sbjct: 422 APVLDR-IEIEEWAVD 436 >UniRef50_C8X2Y0 Putative uncharacterized protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X2Y0_DESRD Length = 469 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 53/411 (12%), Positives = 118/411 (28%), Gaps = 32/411 (7%) Query: 22 ISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDM 81 + L L+ L + + +++ EL D E + I + Sbjct: 32 LGLAPQHLAVLGWLRHWEEQTARQTITDRELSIQISRAVDLLGLGDEASAPKT--IIERL 89 Query: 82 VRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAAD 141 + RLL S+ A Y LT LG + + + +F T L ++ LK Sbjct: 90 MHFRLLRNAISQSARH--EYCLTRLGRNLARDLLEEVQFGTEDLCALINYAFTGLKEITS 147 Query: 142 AAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAI 201 ++ + ++ I+ E ++ I +L + A+ Sbjct: 148 RRDQSDLPHFLAYQFLGANREAIEYKLQGIE-------EGILTLEKRIKELAGGKDQEAL 200 Query: 202 SSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLD 261 + + EL ++ + + H + + LV L Sbjct: 201 DQAVQAIQANRAYVEELVAAIQEGS-SFLPLQRLLTECREAHLNEPHLLALVDRSLDFLH 259 Query: 262 RIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANAD 321 I Q + + + + + + ++ + P + Sbjct: 260 GISEQVDQLLVHVVDFIHQCLNYQTIIGSLSTRDRLCALQQALLKQALNHPAHMPTLATP 319 Query: 322 RLLDM-RDEEM------ALRDEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQV 374 R + D A D+ L + + E + A ++ + ++ Sbjct: 320 RCKTLAMDWSAEAQNRPAYADQHALQALSDFVPQEVRRQDAPWKEAFVDHARSQWRAVSA 379 Query: 375 P-LDLGLVVREYLSQYPRARHFDVARIVIDQAVRLGVAQADFTGLPAKWQP 424 +DL ++E L+ +P A F + + +W+P Sbjct: 380 SGVDLASWLQELLAPFPDADQFPLLGL------------WYLLQDWPQWEP 418 >UniRef50_C6J1G9 Methyl-accepting chemotaxis sensory transducer n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1G9_9BACL Length = 546 Score = 43.6 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 95/268 (35%), Gaps = 20/268 (7%) Query: 106 LGIGITDYYIR-----QREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPL 160 LG+GIT Y+ + F LS L +A A AA ++V + Sbjct: 118 LGMGITIYFFNVPFYHDKLFPRESLSYLLLFLAFLTVALAFAARFSE---RLQKDVLSQQ 174 Query: 161 KYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQD 220 + + ++ + L+ + Q + D+ L+ R ++ + E + T + Sbjct: 175 Q----DTMEAKRRSDELLSKLQASL--DVLGRLSTQLRENVTVTGSISKEITTTFGSVSS 228 Query: 221 TLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRH 280 TLE LQ+ +Q+ + + + +L S + ++ + +H Sbjct: 229 TLERQTLGLQSTTQSVQEVGGAVEVTAEISARLQELSSDMLHNTEAAGAKMNALSVHIQH 288 Query: 281 VHKFIRTAID-MDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVT 339 + + I + M K R +++ Q V T A + L E A E Sbjct: 289 LQQIITDTVTQMQKLRDQNEQVSQIVDTIHGIS-----AQTNLLAMNAAIEAAHAGEHGK 343 Query: 340 GELPEDLEYEEFNEIREQLAAIIEEQLA 367 G LE + E +Q I + LA Sbjct: 344 GFAVVSLEIRKLAENSQQATQRINDILA 371 >UniRef50_C5L5J0 Kinesin-II 95 kDa subunit, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5L5J0_9ALVE Length = 692 Score = 41.3 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 9/157 (5%) Query: 117 QREFSTLR--LSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLT 174 Q E S L+ L++Q +VA + A +V+ P + + +I D + Sbjct: 340 QEEISRLKSQLAVQTGMVAEGVG-GAPREVTVEKIVEKIVHVHGPSEEEIEQIKDKMAKD 398 Query: 175 QRLMDEQQQQVKDDIAQLLNK------DWRAAISSCELLLSETSGTLRELQDTLEAAGDK 228 Q+ + ++ + + I +K + + E + +L D L+ DK Sbjct: 399 QQEVHKKFEAERQKILAEKSKTEQERQSLLSELQRKEEQGEKQREQQVQLLDKLKQMEDK 458 Query: 229 LQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIIS 265 + IQ A + +L R + + + +RI + Sbjct: 459 MLMGTKVIQQAAVQEKELKKAKRALQKKKEEEERIRA 495 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.306 0.124 0.290 Lambda K H 0.267 0.0381 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,996,364,183 Number of Sequences: 3077464 Number of extensions: 68989388 Number of successful extensions: 274294 Number of sequences better than 1.0e-01: 53 Number of HSP's better than 0.1 without gapping: 17 Number of HSP's successfully gapped in prelim test: 88 Number of HSP's that attempted gapping in prelim test: 274180 Number of HSP's gapped (non-prelim): 152 length of query: 440 length of database: 1,040,396,356 effective HSP length: 132 effective length of query: 308 effective length of database: 634,171,108 effective search space: 195324701264 effective search space used: 195324701264 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 94 (40.9 bits)