BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (132 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B4THW6 Hydrogenase-1 operon protein HyaE2 n=32 Tax=Salm... 77 2e-13 UniRef50_Q0A721 Hydrogenase-1 expression HyaE n=1 Tax=Alkalilimn... 64 1e-09 UniRef50_P31910 Hydrogenase expression/formation protein hoxO n=... 60 3e-08 UniRef50_P95498 HupG protein n=1 Tax=Pseudomonas hydrogenovora R... 57 3e-07 UniRef50_A4JRF8 Hydrogenase-1 expression HyaE n=2 Tax=Burkholder... 55 8e-07 UniRef50_A1KC54 Hydrogenase-1 operon protein hyaE n=1 Tax=Azoarc... 54 1e-06 UniRef50_C7I143 Hydrogenase-1 expression HyaE n=1 Tax=Thiomonas ... 52 7e-06 UniRef50_Q478M0 Hydrogenase-1 expression HyaE n=1 Tax=Dechloromo... 51 1e-05 UniRef50_D2LGL7 Hydrogenase-1 expression HyaE n=1 Tax=Rhodomicro... 49 4e-05 UniRef50_B2JX96 Hydrogenase-1 expression HyaE n=1 Tax=Burkholder... 49 4e-05 UniRef50_P48339 Hydrogenase expression/formation protein hupG n=... 47 2e-04 UniRef50_P40593 Hydrogenase expression/formation protein hoxO n=... 45 6e-04 UniRef50_Q6LB95 Hydrogenase-related protein O n=1 Tax=Oligotroph... 44 0.002 UniRef50_P28149 Hydrogenase expression/formation protein hupG n=... 40 0.021 >UniRef50_B4THW6 Hydrogenase-1 operon protein HyaE2 n=32 Tax=Salmonella enterica RepID=B4THW6_SALHS Length = 136 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 57/99 (57%) Query: 17 RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIAD 76 +G+ L + P +VLL SDP + PEV+D+ V+I E+L++FP ++ A AD Sbjct: 15 KGFLVTDAQTLPSLINAHPTVLVLLQSDPNKHPEVADSWVIIPEILKQFPATSYTAAFAD 74 Query: 77 LEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAE 115 EQSE I + + ++PA L+F + G L G++ W E Sbjct: 75 SEQSELIAREYRILKYPALLIFRQHRFVGSLAGLYSWQE 113 >UniRef50_Q0A721 Hydrogenase-1 expression HyaE n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A721_ALHEH Length = 145 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 1/109 (0%) Query: 17 RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIAD 76 G V+E+ +++W QA + ++LL+ DP R E D V++ ELL Q A+ Sbjct: 13 HGLPRVNEAGVEEWAEQAGEAMLLLAGDPGRVRESGDFAVVLPELLTAMGGRL-QAAVVS 71 Query: 77 LEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 + +A+G RFGV R+PA +V G Y G + G+ W + + L+E Sbjct: 72 QDSEKAVGRRFGVRRWPALVVLRDGGYLGCIEGMRDWLVFLEELNRLLE 120 >UniRef50_P31910 Hydrogenase expression/formation protein hoxO n=3 Tax=Burkholderiales RepID=HOXO_RALEH Length = 161 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Query: 22 VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQS 80 V + +DDWL D V+ ++ DP R PE D V++ EL R F + + VA + E Sbjct: 34 VDQDSIDDWLAGGGDCVLFIAGDPVRFPECVDVAVVLPELQRVFFNGFRIGVAKREREHE 93 Query: 81 EAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMR 121 + + +RFG R P+ + G Y V+ G+ W E + +R Sbjct: 94 DVLANRFGTQRRPSLVFLRDGAYVSVIAGMRDWDEYVREVR 134 >UniRef50_P95498 HupG protein n=1 Tax=Pseudomonas hydrogenovora RepID=P95498_9PSED Length = 160 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Query: 22 VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE 81 V + +D WL GV+L++ DP R PE D V++ EL R +++ I E E Sbjct: 35 VDPASIDSWLAAEGFGVLLIAGDPVRFPESLDVAVVLPEL-RAACGQQFRIGIVRAEHEE 93 Query: 82 AIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 A+ RFG R P + G Y G L G+ W + ++ + + E R Sbjct: 94 ALAARFGARRRPTLVCVRDGGYLGELAGMLDWDDYVSQLTAIFERPASR 142 >UniRef50_A4JRF8 Hydrogenase-1 expression HyaE n=2 Tax=Burkholderiales RepID=A4JRF8_BURVG Length = 177 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 6/133 (4%) Query: 3 NDTPFDALWQRMLARGW-TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGEL 61 D P A+ QR++ + T V E LD WL + VVLL DP R PE D ++ EL Sbjct: 30 QDCP--AVVQRLIEQAHATFVDEHTLDGWLADGGECVVLLMGDPVRFPESLDVAAVLPEL 87 Query: 62 LREFP---DYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELIN 118 ++A+A AI RFG R+PA L G Y VL+G+ W + + Sbjct: 88 AHVAAVRFGRALRLAVATRAGENAIARRFGSLRWPALLWLRDGQYVTVLSGMMDWDDYVK 147 Query: 119 LMRGLVEPQQERA 131 + + RA Sbjct: 148 CVADALAGPTTRA 160 >UniRef50_A1KC54 Hydrogenase-1 operon protein hyaE n=1 Tax=Azoarcus sp. BH72 RepID=A1KC54_AZOSB Length = 152 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 1 MSNDTPFDALWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIG 59 M++ + QR+ R G+ + S L + V+LL+ DP R PE D V++ Sbjct: 1 MTSPDALENALQRLAQRDGFQRLEASDLPAFAAAPGTAVLLLTDDPVRCPEAWDMVVVLP 60 Query: 60 ELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF------TGGNYRGVLNGIHPW 113 E L+ P + A+A E S AI FG+ R+PA LV G +Y G L G+ W Sbjct: 61 EALKAVPGL--RPAVAAPEASRAIAAGFGITRYPALLVLRGEGAAPGHDYVGALEGMRDW 118 Query: 114 AELINLMRGLVEPQQER 130 L+ + L R Sbjct: 119 QVLVQSLATLAAAPAGR 135 >UniRef50_C7I143 Hydrogenase-1 expression HyaE n=1 Tax=Thiomonas intermedia K12 RepID=C7I143_THIIN Length = 136 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 1/108 (0%) Query: 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADL 77 G+ V+ LD L A + V+ + DP TPE +D V++ EL+R F +A Sbjct: 14 GYPRVTAKTLDAMLQTAENTVLFFTEDPATTPEANDVAVVLPELVRHFRGRIAPAVVAR- 72 Query: 78 EQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 E A+ +G +PA + Y G ++ I WA+ + ++G ++ Sbjct: 73 EDERALQALYGFNHWPALVFLRKDRYLGAISKIQDWADYLEQIQGFLD 120 >UniRef50_Q478M0 Hydrogenase-1 expression HyaE n=1 Tax=Dechloromonas aromatica RCB RepID=Q478M0_DECAR Length = 152 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 11/111 (9%) Query: 25 SRLDDWLTQAPDGV--VLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA--IADLEQS 80 R+D+ + P G+ +LL+ DP+R EV D V++ E L+ Q+A +A + + Sbjct: 29 CRVDNSKPEFPAGLTALLLTEDPQRNLEVLDACVILPEALKPV---AAQIARWVAGPDFA 85 Query: 81 EAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW----AELINLMRGLVEPQ 127 A+ ++GV R PA + G + G+LNGI W +E+ L+ G V+P+ Sbjct: 86 PALMAQYGVPRAPAVVFLRDGQFVGILNGIRDWGEYQSEVARLLNGPVQPK 136 >UniRef50_D2LGL7 Hydrogenase-1 expression HyaE n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL7_RHOVA Length = 150 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%) Query: 17 RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIAD 76 G+T V+E+ LD +L D V+ D R E +D V++ ELL+ FP VA A Sbjct: 13 HGFTTVTEATLDAFLAAHADSVLFFPGDTDRLVESADVAVILPELLKSFP----HVAPAL 68 Query: 77 LEQSE--AIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELI 117 +E++ + RF FPA + G Y G + + W E + Sbjct: 69 VEKASERPLQLRFRFNAFPALVFLRGDGYLGAITRVLNWPEYM 111 >UniRef50_B2JX96 Hydrogenase-1 expression HyaE n=1 Tax=Burkholderia phymatum STM815 RepID=B2JX96_BURP8 Length = 148 Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 7 FDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLS-SDPKRTPEVSDNPVMIGELLREF 65 + L + +L +G+ + D A +V L +P R E D V++ E++R+F Sbjct: 12 LECLRELLLKQGFLEQQNNTFDRIAVGARTPLVTLPLGNPARHSEFLDLTVVLPEIVRQF 71 Query: 66 PDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIH 111 +++ A A S AI +RFGV R PA + G Y G + G+ Sbjct: 72 GPDSFRAAFATPPASAAIANRFGVLRRPALIFLREGCYLGAIEGLR 117 >UniRef50_P48339 Hydrogenase expression/formation protein hupG n=4 Tax=Bradyrhizobium RepID=HUPG_BRAJA Length = 148 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 8/122 (6%) Query: 17 RGWTPVSESRLDDWLTQAPDG----VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQV 72 G V + +D +L A + V+L + DP R PE +D V++ EL+ F Sbjct: 13 HGLNEVDAATVDHFLGAADEAGAIAVLLSAGDPNRFPEATDVAVVLPELIAAFGGRLRGA 72 Query: 73 AIADLEQSEAIGDRFGVFRFPATLVFTG-GNYRGVLNGIHPWAELINLMRGLVE-PQQER 130 IA ++S A+G RFGV R TL+F G G++ I W+ ++ + L++ P+ + Sbjct: 73 VIARGDES-ALGQRFGV-RVQPTLIFVAKGETLGLIAKIQDWSVYVDRITKLIDRPRGQS 130 Query: 131 AS 132 A+ Sbjct: 131 AA 132 >UniRef50_P40593 Hydrogenase expression/formation protein hoxO n=4 Tax=Gammaproteobacteria RepID=HOXO_AZOVI Length = 148 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 10 LWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY 68 L QR+ G+ + LD + P V+ + DP+R PE D V++ EL++ FP Sbjct: 5 LIQRLTTTLGYPLLDADGLDRQVRTQPFSVLFFAGDPQRFPEALDVAVILPELVKAFPQL 64 Query: 69 TWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 + IA +++ G R+G +P+ + G Y G L+ + W E + + ++ + Sbjct: 65 APAL-IAGADEARLQG-RYGFSVWPSLVFLAGERYLGCLSRVLDWGEYLERIPAILAGEN 122 Query: 129 E 129 E Sbjct: 123 E 123 >UniRef50_Q6LB95 Hydrogenase-related protein O n=1 Tax=Oligotropha carboxidovorans OM5 RepID=Q6LB95_OLICO Length = 127 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Query: 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADL 77 G+ + + DD+ + + VV L+ DP + E D ++ EL++ F Y ++ A+ D Sbjct: 13 GYPLLDAASYDDFASAKGERVVFLTGDPVKNLETDDVAAILPELVQAF-QYRFKPAVVDR 71 Query: 78 EQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 +++ +R+ V+ P+ L G G + + W + ++ ++ +++ Q Sbjct: 72 AIEQSLRERYDVWPTPSLLFLRDGALIGAVPKVREWPDYLSEIKSILDRPQ 122 >UniRef50_P28149 Hydrogenase expression/formation protein hupG n=2 Tax=Rhizobium RepID=HUPG_RHILV Length = 149 Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 6/123 (4%) Query: 9 ALWQRMLARGWTPV-SESRLDDWLTQA---PDGVVLL-SSDPKRTPEVSDNPVMIGELLR 63 AL + + R PV E+ +D +L A PD VL + DP + PE D V++ EL++ Sbjct: 4 ALVRALNERAHLPVVDETNIDAFLAPAAGEPDNAVLFFTGDPAQRPEADDVAVVLPELMQ 63 Query: 64 EFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGL 123 F + A+ + + RF V P+ +V GVL I W+E + + Sbjct: 64 VF-RGRLRGAVVRRATEDKLKARFNVVVMPSLVVTRRDQPVGVLGKIRDWSEYVEKISAW 122 Query: 124 VEP 126 + P Sbjct: 123 LSP 125 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A4JRF8 Hydrogenase-1 expression HyaE n=2 Tax=Burkholder... 144 7e-34 UniRef50_Q0A721 Hydrogenase-1 expression HyaE n=1 Tax=Alkalilimn... 137 9e-32 UniRef50_P31910 Hydrogenase expression/formation protein hoxO n=... 135 3e-31 UniRef50_B4THW6 Hydrogenase-1 operon protein HyaE2 n=32 Tax=Salm... 133 2e-30 UniRef50_P95498 HupG protein n=1 Tax=Pseudomonas hydrogenovora R... 130 1e-29 UniRef50_P40593 Hydrogenase expression/formation protein hoxO n=... 127 1e-28 UniRef50_B2JX96 Hydrogenase-1 expression HyaE n=1 Tax=Burkholder... 126 2e-28 UniRef50_A1KC54 Hydrogenase-1 operon protein hyaE n=1 Tax=Azoarc... 125 4e-28 UniRef50_P48339 Hydrogenase expression/formation protein hupG n=... 125 5e-28 UniRef50_C7I143 Hydrogenase-1 expression HyaE n=1 Tax=Thiomonas ... 125 5e-28 UniRef50_D2LGL7 Hydrogenase-1 expression HyaE n=1 Tax=Rhodomicro... 115 3e-25 UniRef50_Q478M0 Hydrogenase-1 expression HyaE n=1 Tax=Dechloromo... 103 2e-21 Sequences not found previously or not previously below threshold: UniRef50_A0P1N5 HupG protein n=1 Tax=Labrenzia aggregata IAM 126... 101 9e-21 UniRef50_Q6LB95 Hydrogenase-related protein O n=1 Tax=Oligotroph... 97 2e-19 UniRef50_P28149 Hydrogenase expression/formation protein hupG n=... 92 4e-18 UniRef50_C8S275 Hydrogenase-1 expression HyaE n=1 Tax=Rhodobacte... 85 6e-16 UniRef50_Q07S96 Hydrogenase-1 expression HyaE n=6 Tax=Rhodopseud... 83 3e-15 UniRef50_Q03006 Hydrogenase expression/formation protein hupG n=... 81 1e-14 UniRef50_A5FVC9 Hydrogenase-1 expression HyaE n=1 Tax=Acidiphili... 78 8e-14 UniRef50_A7IHC9 Hydrogenase-1 expression HyaE n=3 Tax=Xanthobact... 68 1e-10 UniRef50_B2IJ34 Hydrogenase-1 expression HyaE n=1 Tax=Beijerinck... 55 1e-06 UniRef50_A7BI71 Putative uncharacterized protein hupG n=1 Tax=Hy... 51 1e-05 UniRef50_O66899 Uncharacterized protein aq_668 n=2 Tax=Aquificac... 46 4e-04 UniRef50_A5GCZ6 Thioredoxin domain protein n=5 Tax=Geobacter Rep... 40 0.017 UniRef50_UPI0001C3605D thioredoxin n=1 Tax=Clostridium hathewayi... 39 0.037 UniRef50_C6WZN3 Thioredoxin C-2 n=11 Tax=Bacteroidetes RepID=C6W... 39 0.037 UniRef50_Q67S09 Thioredoxin n=1 Tax=Symbiobacterium thermophilum... 38 0.063 >UniRef50_A4JRF8 Hydrogenase-1 expression HyaE n=2 Tax=Burkholderiales RepID=A4JRF8_BURVG Length = 177 Score = 144 bits (364), Expect = 7e-34, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 6/133 (4%) Query: 3 NDTPFDALWQRMLARGW-TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGEL 61 D P A+ QR++ + T V E LD WL + VVLL DP R PE D ++ EL Sbjct: 30 QDCP--AVVQRLIEQAHATFVDEHTLDGWLADGGECVVLLMGDPVRFPESLDVAAVLPEL 87 Query: 62 LREF---PDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELIN 118 ++A+A AI RFG R+PA L G Y VL+G+ W + + Sbjct: 88 AHVAAVRFGRALRLAVATRAGENAIARRFGSLRWPALLWLRDGQYVTVLSGMMDWDDYVK 147 Query: 119 LMRGLVEPQQERA 131 + + RA Sbjct: 148 CVADALAGPTTRA 160 >UniRef50_Q0A721 Hydrogenase-1 expression HyaE n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A721_ALHEH Length = 145 Score = 137 bits (346), Expect = 9e-32, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 12 QRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQ 71 Q G V+E+ +++W QA + ++LL+ DP R E D V++ ELL Q Sbjct: 8 QLTEEHGLPRVNEAGVEEWAEQAGEAMLLLAGDPGRVRESGDFAVVLPELLTAMGGRL-Q 66 Query: 72 VAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 A+ + +A+G RFGV R+PA +V G Y G + G+ W + + L+E R Sbjct: 67 AAVVSQDSEKAVGRRFGVRRWPALVVLRDGGYLGCIEGMRDWLVFLEELNRLLEGPVRR 125 >UniRef50_P31910 Hydrogenase expression/formation protein hoxO n=3 Tax=Burkholderiales RepID=HOXO_RALEH Length = 161 Score = 135 bits (341), Expect = 3e-31, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%) Query: 5 TPFDALWQRML-ARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLR 63 + +R++ V + +DDWL D V+ ++ DP R PE D V++ EL R Sbjct: 16 DAVPPVIERLVEQHQAAWVDQDSIDDWLAGGGDCVLFIAGDPVRFPECVDVAVVLPELQR 75 Query: 64 EFP-DYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRG 122 F + VA + E + + +RFG R P+ + G Y V+ G+ W E + +R Sbjct: 76 VFFNGFRIGVAKREREHEDVLANRFGTQRRPSLVFLRDGAYVSVIAGMRDWDEYVREVRR 135 Query: 123 LVEPQQER 130 + R Sbjct: 136 ALAMPTSR 143 >UniRef50_B4THW6 Hydrogenase-1 operon protein HyaE2 n=32 Tax=Salmonella enterica RepID=B4THW6_SALHS Length = 136 Score = 133 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 62/117 (52%) Query: 14 MLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA 73 + +G+ L + P +VLL SDP + PEV+D+ V+I E+L++FP ++ A Sbjct: 12 LADKGFLVTDAQTLPSLINAHPTVLVLLQSDPNKHPEVADSWVIIPEILKQFPATSYTAA 71 Query: 74 IADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 AD EQSE I + + ++PA L+F + G L G++ W E + L+ R Sbjct: 72 FADSEQSELIAREYRILKYPALLIFRQHRFVGSLAGLYSWQEYSQRVAALLTTPGYR 128 >UniRef50_P95498 HupG protein n=1 Tax=Pseudomonas hydrogenovora RepID=P95498_9PSED Length = 160 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Query: 22 VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE 81 V + +D WL GV+L++ DP R PE D V++ EL R +++ I E E Sbjct: 35 VDPASIDSWLAAEGFGVLLIAGDPVRFPESLDVAVVLPEL-RAACGQQFRIGIVRAEHEE 93 Query: 82 AIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 A+ RFG R P + G Y G L G+ W + ++ + + E R Sbjct: 94 ALAARFGARRRPTLVCVRDGGYLGELAGMLDWDDYVSQLTAIFERPASR 142 >UniRef50_P40593 Hydrogenase expression/formation protein hoxO n=4 Tax=Gammaproteobacteria RepID=HOXO_AZOVI Length = 148 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 10 LWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY 68 L QR+ G+ + LD + P V+ + DP+R PE D V++ EL++ FP Sbjct: 5 LIQRLTTTLGYPLLDADGLDRQVRTQPFSVLFFAGDPQRFPEALDVAVILPELVKAFPQL 64 Query: 69 TWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 IA +++ G R+G +P+ + G Y G L+ + W E + + ++ + Sbjct: 65 AP-ALIAGADEARLQG-RYGFSVWPSLVFLAGERYLGCLSRVLDWGEYLERIPAILAGEN 122 Query: 129 E 129 E Sbjct: 123 E 123 >UniRef50_B2JX96 Hydrogenase-1 expression HyaE n=1 Tax=Burkholderia phymatum STM815 RepID=B2JX96_BURP8 Length = 148 Score = 126 bits (316), Expect = 2e-28, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Query: 7 FDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLS-SDPKRTPEVSDNPVMIGELLREF 65 + L + +L +G+ + D A +V L +P R E D V++ E++R+F Sbjct: 12 LECLRELLLKQGFLEQQNNTFDRIAVGARTPLVTLPLGNPARHSEFLDLTVVLPEIVRQF 71 Query: 66 PDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGL 123 +++ A A S AI +RFGV R PA + G Y G + G+ + + + Sbjct: 72 GPDSFRAAFATPPASAAIANRFGVLRRPALIFLREGCYLGAIEGLRDREDYLQCFTRI 129 >UniRef50_A1KC54 Hydrogenase-1 operon protein hyaE n=1 Tax=Azoarcus sp. BH72 RepID=A1KC54_AZOSB Length = 152 Score = 125 bits (314), Expect = 4e-28, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 1 MSNDTPFDALWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIG 59 M++ + QR+ R G+ + S L + V+LL+ DP R PE D V++ Sbjct: 1 MTSPDALENALQRLAQRDGFQRLEASDLPAFAAAPGTAVLLLTDDPVRCPEAWDMVVVLP 60 Query: 60 ELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT------GGNYRGVLNGIHPW 113 E L+ P + A+A E S AI FG+ R+PA LV G +Y G L G+ W Sbjct: 61 EALKAVPGL--RPAVAAPEASRAIAAGFGITRYPALLVLRGEGAAPGHDYVGALEGMRDW 118 Query: 114 AELINLMRGLVEPQQER 130 L+ + L R Sbjct: 119 QVLVQSLATLAAAPAGR 135 >UniRef50_P48339 Hydrogenase expression/formation protein hupG n=4 Tax=Bradyrhizobium RepID=HUPG_BRAJA Length = 148 Score = 125 bits (313), Expect = 5e-28, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 14 MLARGWTPVSESRLDDWLTQAPDG----VVLLSSDPKRTPEVSDNPVMIGELLREFPDYT 69 + G V + +D +L A + V+L + DP R PE +D V++ EL+ F Sbjct: 10 LTRHGLNEVDAATVDHFLGAADEAGAIAVLLSAGDPNRFPEATDVAVVLPELIAAFGGRL 69 Query: 70 WQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 IA ++S A+G RFGV P + G G++ I W+ ++ + L++ + Sbjct: 70 RGAVIARGDES-ALGQRFGVRVQPTLIFVAKGETLGLIAKIQDWSVYVDRITKLIDRPRG 128 Query: 130 RAS 132 +++ Sbjct: 129 QSA 131 >UniRef50_C7I143 Hydrogenase-1 expression HyaE n=1 Tax=Thiomonas intermedia K12 RepID=C7I143_THIIN Length = 136 Score = 125 bits (313), Expect = 5e-28, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 10 LWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY 68 L R+ G+ V+ LD L A + V+ + DP TPE +D V++ EL+R F Sbjct: 5 LIDRLTDTLGYPRVTAKTLDAMLQTAENTVLFFTEDPATTPEANDVAVVLPELVRHFRGR 64 Query: 69 TWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 +A E A+ +G +PA + Y G ++ I WA+ + ++G ++ Sbjct: 65 IAPAVVAR-EDERALQALYGFNHWPALVFLRKDRYLGAISKIQDWADYLEQIQGFLDA 121 >UniRef50_D2LGL7 Hydrogenase-1 expression HyaE n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL7_RHOVA Length = 150 Score = 115 bits (289), Expect = 3e-25, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Query: 15 LARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAI 74 G+T V+E+ LD +L D V+ D R E +D V++ ELL+ FP A+ Sbjct: 11 ARHGFTTVTEATLDAFLAAHADSVLFFPGDTDRLVESADVAVILPELLKSFPHVAP--AL 68 Query: 75 ADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 + + RF FPA + G Y G + + W E + + ++ + Sbjct: 69 VEKASERPLQLRFRFNAFPALVFLRGDGYLGAITRVLNWPEYMREIGAILASE 121 >UniRef50_Q478M0 Hydrogenase-1 expression HyaE n=1 Tax=Dechloromonas aromatica RCB RepID=Q478M0_DECAR Length = 152 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 2 SNDTPFDALWQRMLA-RGWTPVSESRLDDWLTQAPDGV--VLLSSDPKRTPEVSDNPVMI 58 ++ + RM G+ R+D+ + P G+ +LL+ DP+R EV D V++ Sbjct: 10 TSLEKLETAIGRMQQKHGF-----CRVDNSKPEFPAGLTALLLTEDPQRNLEVLDACVIL 64 Query: 59 GELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELIN 118 E L+ + +A + + A+ ++GV R PA + G + G+LNGI W E + Sbjct: 65 PEALKPVAAQIAR-WVAGPDFAPALMAQYGVPRAPAVVFLRDGQFVGILNGIRDWGEYQS 123 Query: 119 LMRGLVEPQQE 129 + L+ + Sbjct: 124 EVARLLNGPVQ 134 >UniRef50_A0P1N5 HupG protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1N5_9RHOB Length = 144 Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 7 FDALWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREF 65 F L Q ++ R G+ VS L +V D +R E +D V++ EL + Sbjct: 2 FSPLLQSIIDREGYEVVSHETLASTAQAHEFAMVFFPGDAERLAESNDVAVVLPELGKAL 61 Query: 66 PDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 + + + + + R+ FPA + G+Y GVL GI WA+ + + ++ Sbjct: 62 MGRVATLVV-ERDSERELQRRYLFNAFPAIVFLRRGDYLGVLQGILDWADYLEQIPDILG 120 Query: 126 PQ 127 + Sbjct: 121 RE 122 >UniRef50_Q6LB95 Hydrogenase-related protein O n=1 Tax=Oligotropha carboxidovorans OM5 RepID=Q6LB95_OLICO Length = 127 Score = 97.0 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 60/124 (48%), Gaps = 2/124 (1%) Query: 10 LWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY 68 +R+ G+ + + DD+ + + VV L+ DP + E D ++ EL++ F Y Sbjct: 4 AIKRLTNDLGYPLLDAASYDDFASAKGERVVFLTGDPVKNLETDDVAAILPELVQAF-QY 62 Query: 69 TWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 ++ A+ D +++ +R+ V+ P+ L G G + + W + ++ ++ +++ Q Sbjct: 63 RFKPAVVDRAIEQSLRERYDVWPTPSLLFLRDGALIGAVPKVREWPDYLSEIKSILDRPQ 122 Query: 129 ERAS 132 + Sbjct: 123 PATA 126 >UniRef50_P28149 Hydrogenase expression/formation protein hupG n=2 Tax=Rhizobium RepID=HUPG_RHILV Length = 149 Score = 92.4 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 6/123 (4%) Query: 9 ALWQRMLARGW-TPVSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLR 63 AL + + R V E+ +D +L + + V+ + DP + PE D V++ EL++ Sbjct: 4 ALVRALNERAHLPVVDETNIDAFLAPAAGEPDNAVLFFTGDPAQRPEADDVAVVLPELMQ 63 Query: 64 EFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGL 123 F A+ + + RF V P+ +V GVL I W+E + + Sbjct: 64 VFRGRLRG-AVVRRATEDKLKARFNVVVMPSLVVTRRDQPVGVLGKIRDWSEYVEKISAW 122 Query: 124 VEP 126 + P Sbjct: 123 LSP 125 >UniRef50_C8S275 Hydrogenase-1 expression HyaE n=1 Tax=Rhodobacter sp. SW2 RepID=C8S275_9RHOB Length = 143 Score = 85.1 bits (209), Expect = 6e-16, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 2 SNDTPFDALWQRMLAR-GWTPVSE-SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIG 59 + L R+ GW ++ S ++ + + + DP R E +D V++ Sbjct: 11 TKPAGLHPLIARLTTDLGWPRLANLSDAAEFTARPGAHCLFIPGDPARNLETADAAVILP 70 Query: 60 ELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINL 119 EL F + A+ D A+ + + P L F G Y G + I W + I Sbjct: 71 ELRMAF-QRAFDCAVVDDAIEAALRETHRALKTPGFLFFREGRYLGAVEKIRDWDDYIAR 129 Query: 120 MRGLV 124 + ++ Sbjct: 130 ITHIL 134 >UniRef50_Q07S96 Hydrogenase-1 expression HyaE n=6 Tax=Rhodopseudomonas palustris RepID=Q07S96_RHOP5 Length = 135 Score = 82.8 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 40 LLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT 99 D R PE +D V++ +L++ FP AI E + RFGV P+ + Sbjct: 38 FFRGDLARWPETADLAVVLPQLIKAFPGRL-TAAIVAAEAERDLMRRFGVSVCPSLALVR 96 Query: 100 GGNYRGVLNGIHPWAELINLMRGLVEPQQERAS 132 G GV+ I W+ + + ++ RA+ Sbjct: 97 PGRTLGVIPKIQDWSSYVARITAMLADDDLRAA 129 >UniRef50_Q03006 Hydrogenase expression/formation protein hupG n=10 Tax=Rhodobacteraceae RepID=HUPG_RHOCA Length = 138 Score = 81.2 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 10 LWQRMLAR-GWTPV-SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD 67 L R+ GW + + L ++ T+ + + D R E D V++ EL R+ Sbjct: 19 LVARLTTEFGWPRLENAHDLREFTTRPGAHCLFVPGDAARNLETPDAAVVLPEL-RQAFQ 77 Query: 68 YTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 + A+ + + V + P+ L F G++ G + I W + I ++ + Sbjct: 78 NAFDCAVVGDGIETELRETTRVLKTPSFLFFRDGDFLGGIEKIRDWDDYIARTSHILAAK 137 Query: 128 Q 128 Sbjct: 138 G 138 >UniRef50_A5FVC9 Hydrogenase-1 expression HyaE n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FVC9_ACICJ Length = 132 Score = 78.2 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 17 RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIAD 76 G + L+ L + +VL + DP R E+ D V++ EL + F ++ A+ D Sbjct: 14 EGVRELGGDGLEAALAE-GTTLVLFTGDPARHREIDDVAVIVPELAKAFAGR-FRCAMVD 71 Query: 77 LEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 ++ A RF V P ++ G G + + WAE + + G+++ Sbjct: 72 PDRERAAAARFRVVVRPTLVLVHEGAMIGSVARMRSWAEYLEAIGGMLDR 121 >UniRef50_A7IHC9 Hydrogenase-1 expression HyaE n=3 Tax=Xanthobacteraceae RepID=A7IHC9_XANP2 Length = 136 Score = 67.8 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%) Query: 10 LWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT 69 + + + R W + D A D + L + K E D V++ EL++ Sbjct: 15 VRRLVSERAWPYLEAPE-DTARLDARDHFLFLPAHGKAHLESPDIAVVLPELVKALGGEA 73 Query: 70 -WQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 A+A + A+ D PA +V G G ++ + W E + + L++ Sbjct: 74 VLGGAVAGPKTEAALRDAL-SLALPAIVVVRAGLPVGAISRMRDWDEYLERLGALLKTPS 132 >UniRef50_B2IJ34 Hydrogenase-1 expression HyaE n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJ34_BEII9 Length = 131 Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 9/122 (7%) Query: 10 LWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP--- 66 L +R++ P+ E+ L A ++ L S ++ E D ++ +LL+ Sbjct: 9 LVRRLVEEHRMPLVETDLP----PAGLRLLFLPSHERQHLETPDIAAVLPDLLQVCRKLL 64 Query: 67 --DYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 + A+A +G PA +V G GV+ + WA+ + + ++ Sbjct: 65 PEGVNIEGAVAGSALEARLGAAIDGLSLPALIVMDGQTPIGVIARMRDWADYLARFKAIL 124 Query: 125 EP 126 P Sbjct: 125 AP 126 >UniRef50_A7BI71 Putative uncharacterized protein hupG n=1 Tax=Hydrogenobacter thermophilus RepID=A7BI71_HYDTH Length = 103 Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 6/99 (6%) Query: 27 LDDWLTQAPDGVVLLSSDPKR--TPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIG 84 L+ L + + + S+ K+ E+ D V++ EL R F +I E E + Sbjct: 9 LESMLAEGKTLALYVYSESKKDTLRELFDTQVVVPELERAFDSKVEFYSINADEHPEIL- 67 Query: 85 DRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGL 123 R+ + P+ ++F G L GI W E + + L Sbjct: 68 RRY---KLPSLVLFKEGVEVSKLEGIKAWNEYVEALSCL 103 >UniRef50_O66899 Uncharacterized protein aq_668 n=2 Tax=Aquificaceae RepID=Y668_AQUAE Length = 112 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 9/110 (8%) Query: 17 RGWTPVSESRLDDWLTQAPDGVVLLSSDP--KRTPEVSDNPVMIGELLREFPDYTWQVAI 74 + ++E L + + + V+ + S+ + E+ D V+ EL + F + Sbjct: 8 QNLKRINEEDLRNLMEKGETFVLYVRSERLYDKVKEIFDVDVVFPELAKSFEGIPFYWGD 67 Query: 75 ADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 AD + + P+ L+F G L GI WAE ++ + Sbjct: 68 ADELKELNVIP-------PSVLIFKEGKPVEFLQGIKTWAEYTRKLKESL 110 >UniRef50_A5GCZ6 Thioredoxin domain protein n=5 Tax=Geobacter RepID=A5GCZ6_GEOUR Length = 150 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Query: 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS 80 +++ D ++++ P V+ P P + + E+ RE V + E++ Sbjct: 48 ELTDRSFDSFVSRYPGPVLAEFWAPW-UPHCRNFAPAVREIARELAGKAA-VVQVNTEEN 105 Query: 81 EAIGDRFGVFRFPATLVFTGGNYRGVLNGIHP 112 + +RFG+ PA L+ G L+G Sbjct: 106 PLLSNRFGIRSIPALLILKKGTVLATLSGAQE 137 >UniRef50_UPI0001C3605D thioredoxin n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3605D Length = 103 Score = 39.3 bits (90), Expect = 0.037, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 57 MIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAEL 116 ++ ++ +EF D + D +Q++ + +GV +P ++ G G L G+ + Sbjct: 37 VLKDVEKEFGDDL-TILKVDFDQNKDLTAEYGVTGYPTLVLLKEGEEVGRLQGLQQKPVI 95 Query: 117 INLM 120 I L+ Sbjct: 96 IKLV 99 >UniRef50_C6WZN3 Thioredoxin C-2 n=11 Tax=Bacteroidetes RepID=C6WZN3_FLAB3 Length = 101 Score = 39.3 bits (90), Expect = 0.037, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 62 LREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMR 121 ++E ++ D++Q AI +GV P VF G +G+H +N + Sbjct: 37 VKENIGDLARIVKIDVDQFPAIAAEYGVRGVPTLAVFRNGEMLWKESGVHD----VNTLT 92 Query: 122 GLV 124 GL+ Sbjct: 93 GLL 95 >UniRef50_Q67S09 Thioredoxin n=1 Tax=Symbiobacterium thermophilum RepID=Q67S09_SYMTH Length = 108 Score = 38.5 bits (88), Expect = 0.063, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%) Query: 20 TPVSESRLDDWLTQAPDGVVLLSSD--PKRTPEVSDNPVMIGELLREFPDYTWQVAIADL 77 ++ D+ + + P +V ++D P + D E FP+ + A+ D Sbjct: 2 QRLTAETFDEAVREHPHLIVNFTADWCPD-CRRIKDAYAGFPE---RFPEIAF--AVVDT 55 Query: 78 EQSEAIGDRFGVFRFPATLVFTGGN 102 E+S + +RF V P+ LVF G Sbjct: 56 EESPDLAERFDVRGIPSLLVFRDGE 80 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P31910 Hydrogenase expression/formation protein hoxO n=... 144 9e-34 UniRef50_A4JRF8 Hydrogenase-1 expression HyaE n=2 Tax=Burkholder... 142 3e-33 UniRef50_Q0A721 Hydrogenase-1 expression HyaE n=1 Tax=Alkalilimn... 138 4e-32 UniRef50_P95498 HupG protein n=1 Tax=Pseudomonas hydrogenovora R... 135 3e-31 UniRef50_B4THW6 Hydrogenase-1 operon protein HyaE2 n=32 Tax=Salm... 135 6e-31 UniRef50_C8S275 Hydrogenase-1 expression HyaE n=1 Tax=Rhodobacte... 132 3e-30 UniRef50_Q03006 Hydrogenase expression/formation protein hupG n=... 132 4e-30 UniRef50_P40593 Hydrogenase expression/formation protein hoxO n=... 132 5e-30 UniRef50_Q6LB95 Hydrogenase-related protein O n=1 Tax=Oligotroph... 131 6e-30 UniRef50_C7I143 Hydrogenase-1 expression HyaE n=1 Tax=Thiomonas ... 130 1e-29 UniRef50_P48339 Hydrogenase expression/formation protein hupG n=... 125 3e-28 UniRef50_A0P1N5 HupG protein n=1 Tax=Labrenzia aggregata IAM 126... 124 8e-28 UniRef50_A1KC54 Hydrogenase-1 operon protein hyaE n=1 Tax=Azoarc... 124 8e-28 UniRef50_B2JX96 Hydrogenase-1 expression HyaE n=1 Tax=Burkholder... 123 2e-27 UniRef50_D2LGL7 Hydrogenase-1 expression HyaE n=1 Tax=Rhodomicro... 123 2e-27 UniRef50_P28149 Hydrogenase expression/formation protein hupG n=... 121 6e-27 UniRef50_Q478M0 Hydrogenase-1 expression HyaE n=1 Tax=Dechloromo... 115 4e-25 UniRef50_Q07S96 Hydrogenase-1 expression HyaE n=6 Tax=Rhodopseud... 105 5e-22 UniRef50_A7IHC9 Hydrogenase-1 expression HyaE n=3 Tax=Xanthobact... 105 5e-22 UniRef50_A5FVC9 Hydrogenase-1 expression HyaE n=1 Tax=Acidiphili... 102 3e-21 UniRef50_B2IJ34 Hydrogenase-1 expression HyaE n=1 Tax=Beijerinck... 102 5e-21 UniRef50_O66899 Uncharacterized protein aq_668 n=2 Tax=Aquificac... 99 6e-20 UniRef50_A7BI71 Putative uncharacterized protein hupG n=1 Tax=Hy... 87 2e-16 Sequences not found previously or not previously below threshold: UniRef50_O28984 Thioredoxin (Trx-3) n=3 Tax=cellular organisms R... 45 7e-04 UniRef50_Q67S09 Thioredoxin n=1 Tax=Symbiobacterium thermophilum... 45 0.001 UniRef50_UPI000178964F Thioredoxin domain protein n=1 Tax=Geobac... 43 0.002 UniRef50_C6D5I5 Thioredoxin n=2 Tax=Bacilli RepID=C6D5I5_PAESJ 43 0.003 UniRef50_P66929 Thioredoxin n=59 Tax=Bacteria RepID=THIO_HELPJ 43 0.004 UniRef50_B1VJ29 Thioredoxin n=2 Tax=Corynebacterium RepID=B1VJ29... 43 0.004 UniRef50_UPI000169923D putative thioredoxin protein n=1 Tax=Endo... 42 0.004 UniRef50_C9LNQ1 Thioredoxin n=1 Tax=Dialister invisus DSM 15470 ... 42 0.006 UniRef50_A7B427 Putative uncharacterized protein n=1 Tax=Ruminoc... 42 0.008 UniRef50_Q5QY72 Thioredoxin domain-containing protein n=2 Tax=Id... 42 0.009 UniRef50_A9IGC2 Putative thioredoxin n=6 Tax=Bordetella RepID=A9... 41 0.009 UniRef50_C6CV88 Thioredoxin domain protein n=2 Tax=Paenibacillus... 41 0.010 UniRef50_UPI0001C3605D thioredoxin n=1 Tax=Clostridium hathewayi... 41 0.012 UniRef50_A6LXL9 Thioredoxin n=5 Tax=Clostridium RepID=A6LXL9_CLOB8 41 0.012 UniRef50_C2MCP9 Thioredoxin n=7 Tax=Bacteroidales RepID=C2MCP9_9... 41 0.012 UniRef50_Q9Y955 Thioredoxin n=1 Tax=Aeropyrum pernix RepID=Q9Y95... 40 0.016 UniRef50_A8GAW9 Thioredoxin domain n=9 Tax=Gammaproteobacteria R... 40 0.017 UniRef50_C0QLX1 TrxA1 n=1 Tax=Desulfobacterium autotrophicum HRM... 40 0.021 UniRef50_Q7URA6 Probable thioredoxin n=1 Tax=Rhodopirellula balt... 40 0.023 UniRef50_B9ZL80 Thioredoxin n=1 Tax=Thioalkalivibrio sp. K90mix ... 40 0.025 UniRef50_Q5UWA6 Thioredoxin n=1 Tax=Haloarcula marismortui RepID... 40 0.028 UniRef50_B7PHA0 Protein disulfide isomerase, putative n=1 Tax=Ix... 40 0.029 UniRef50_D2RFL9 Thioredoxin n=2 Tax=Archaeoglobaceae RepID=D2RFL... 39 0.047 UniRef50_P77395 Uncharacterized protein ybbN n=157 Tax=Enterobac... 39 0.056 UniRef50_Q72IL5 Thioredoxin n=3 Tax=Thermus RepID=Q72IL5_THET2 38 0.075 UniRef50_B8GTW1 Thioredoxin n=1 Tax=Thioalkalivibrio sp. HL-EbGR... 38 0.086 >UniRef50_P31910 Hydrogenase expression/formation protein hoxO n=3 Tax=Burkholderiales RepID=HOXO_RALEH Length = 161 Score = 144 bits (363), Expect = 9e-34, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%) Query: 5 TPFDALWQRMLA-RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLR 63 + +R++ V + +DDWL D V+ ++ DP R PE D V++ EL R Sbjct: 16 DAVPPVIERLVEQHQAAWVDQDSIDDWLAGGGDCVLFIAGDPVRFPECVDVAVVLPELQR 75 Query: 64 EFP-DYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRG 122 F + VA + E + + +RFG R P+ + G Y V+ G+ W E + +R Sbjct: 76 VFFNGFRIGVAKREREHEDVLANRFGTQRRPSLVFLRDGAYVSVIAGMRDWDEYVREVRR 135 Query: 123 LVEPQQER 130 + R Sbjct: 136 ALAMPTSR 143 >UniRef50_A4JRF8 Hydrogenase-1 expression HyaE n=2 Tax=Burkholderiales RepID=A4JRF8_BURVG Length = 177 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 4/128 (3%) Query: 8 DALWQRMLARGW-TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREF- 65 A+ QR++ + T V E LD WL + VVLL DP R PE D ++ EL Sbjct: 33 PAVVQRLIEQAHATFVDEHTLDGWLADGGECVVLLMGDPVRFPESLDVAAVLPELAHVAA 92 Query: 66 --PDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGL 123 ++A+A AI RFG R+PA L G Y VL+G+ W + + + Sbjct: 93 VRFGRALRLAVATRAGENAIARRFGSLRWPALLWLRDGQYVTVLSGMMDWDDYVKCVADA 152 Query: 124 VEPQQERA 131 + RA Sbjct: 153 LAGPTTRA 160 >UniRef50_Q0A721 Hydrogenase-1 expression HyaE n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A721_ALHEH Length = 145 Score = 138 bits (348), Expect = 4e-32, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 10 LWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT 69 L Q G V+E+ +++W QA + ++LL+ DP R E D V++ ELL Sbjct: 6 LDQLTEEHGLPRVNEAGVEEWAEQAGEAMLLLAGDPGRVRESGDFAVVLPELLTAMGGRL 65 Query: 70 WQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 Q A+ + +A+G RFGV R+PA +V G Y G + G+ W + + L+E Sbjct: 66 -QAAVVSQDSEKAVGRRFGVRRWPALVVLRDGGYLGCIEGMRDWLVFLEELNRLLEGPVR 124 Query: 130 R 130 R Sbjct: 125 R 125 >UniRef50_P95498 HupG protein n=1 Tax=Pseudomonas hydrogenovora RepID=P95498_9PSED Length = 160 Score = 135 bits (341), Expect = 3e-31, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 2/126 (1%) Query: 6 PFDALWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLRE 64 L R+L + V + +D WL GV+L++ DP R PE D V++ EL R Sbjct: 18 AVPPLIARLLDQFEAQWVDPASIDSWLAAEGFGVLLIAGDPVRFPESLDVAVVLPEL-RA 76 Query: 65 FPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 +++ I E EA+ RFG R P + G Y G L G+ W + ++ + + Sbjct: 77 ACGQQFRIGIVRAEHEEALAARFGARRRPTLVCVRDGGYLGELAGMLDWDDYVSQLTAIF 136 Query: 125 EPQQER 130 E R Sbjct: 137 ERPASR 142 >UniRef50_B4THW6 Hydrogenase-1 operon protein HyaE2 n=32 Tax=Salmonella enterica RepID=B4THW6_SALHS Length = 136 Score = 135 bits (339), Expect = 6e-31, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 62/117 (52%) Query: 14 MLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA 73 + +G+ L + P +VLL SDP + PEV+D+ V+I E+L++FP ++ A Sbjct: 12 LADKGFLVTDAQTLPSLINAHPTVLVLLQSDPNKHPEVADSWVIIPEILKQFPATSYTAA 71 Query: 74 IADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 AD EQSE I + + ++PA L+F + G L G++ W E + L+ R Sbjct: 72 FADSEQSELIAREYRILKYPALLIFRQHRFVGSLAGLYSWQEYSQRVAALLTTPGYR 128 >UniRef50_C8S275 Hydrogenase-1 expression HyaE n=1 Tax=Rhodobacter sp. SW2 RepID=C8S275_9RHOB Length = 143 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 3/126 (2%) Query: 2 SNDTPFDALWQRMLAR-GWTPVSE-SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIG 59 + L R+ GW ++ S ++ + + + DP R E +D V++ Sbjct: 11 TKPAGLHPLIARLTTDLGWPRLANLSDAAEFTARPGAHCLFIPGDPARNLETADAAVILP 70 Query: 60 ELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINL 119 EL F + A+ D A+ + + P L F G Y G + I W + I Sbjct: 71 ELRMAF-QRAFDCAVVDDAIEAALRETHRALKTPGFLFFREGRYLGAVEKIRDWDDYIAR 129 Query: 120 MRGLVE 125 + ++ Sbjct: 130 ITHILG 135 >UniRef50_Q03006 Hydrogenase expression/formation protein hupG n=10 Tax=Rhodobacteraceae RepID=HUPG_RHOCA Length = 138 Score = 132 bits (331), Expect = 4e-30, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 8 DALWQRMLAR-GWTPV-SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREF 65 L R+ GW + + L ++ T+ + + D R E D V++ EL + F Sbjct: 17 HPLVARLTTEFGWPRLENAHDLREFTTRPGAHCLFVPGDAARNLETPDAAVVLPELRQAF 76 Query: 66 PDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 + A+ + + V + P+ L F G++ G + I W + I ++ Sbjct: 77 -QNAFDCAVVGDGIETELRETTRVLKTPSFLFFRDGDFLGGIEKIRDWDDYIARTSHILA 135 Query: 126 PQQ 128 + Sbjct: 136 AKG 138 >UniRef50_P40593 Hydrogenase expression/formation protein hoxO n=4 Tax=Gammaproteobacteria RepID=HOXO_AZOVI Length = 148 Score = 132 bits (331), Expect = 5e-30, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 7 FDALWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREF 65 L QR+ G+ + LD + P V+ + DP+R PE D V++ EL++ F Sbjct: 2 IHPLIQRLTTTLGYPLLDADGLDRQVRTQPFSVLFFAGDPQRFPEALDVAVILPELVKAF 61 Query: 66 PDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 P A+ + R+G +P+ + G Y G L+ + W E + + ++ Sbjct: 62 PQLA--PALIAGADEARLQGRYGFSVWPSLVFLAGERYLGCLSRVLDWGEYLERIPAILA 119 Query: 126 PQQE 129 + E Sbjct: 120 GENE 123 >UniRef50_Q6LB95 Hydrogenase-related protein O n=1 Tax=Oligotropha carboxidovorans OM5 RepID=Q6LB95_OLICO Length = 127 Score = 131 bits (330), Expect = 6e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 60/127 (47%), Gaps = 2/127 (1%) Query: 7 FDALWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREF 65 +R+ G+ + + DD+ + + VV L+ DP + E D ++ EL++ F Sbjct: 1 MSKAIKRLTNDLGYPLLDAASYDDFASAKGERVVFLTGDPVKNLETDDVAAILPELVQAF 60 Query: 66 PDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 Y ++ A+ D +++ +R+ V+ P+ L G G + + W + ++ ++ +++ Sbjct: 61 -QYRFKPAVVDRAIEQSLRERYDVWPTPSLLFLRDGALIGAVPKVREWPDYLSEIKSILD 119 Query: 126 PQQERAS 132 Q + Sbjct: 120 RPQPATA 126 >UniRef50_C7I143 Hydrogenase-1 expression HyaE n=1 Tax=Thiomonas intermedia K12 RepID=C7I143_THIIN Length = 136 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 8 DALWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP 66 L R+ G+ V+ LD L A + V+ + DP TPE +D V++ EL+R F Sbjct: 3 SPLIDRLTDTLGYPRVTAKTLDAMLQTAENTVLFFTEDPATTPEANDVAVVLPELVRHFR 62 Query: 67 DYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 A+ E A+ +G +PA + Y G ++ I WA+ + ++G ++ Sbjct: 63 GRIA-PAVVAREDERALQALYGFNHWPALVFLRKDRYLGAISKIQDWADYLEQIQGFLDA 121 >UniRef50_P48339 Hydrogenase expression/formation protein hupG n=4 Tax=Bradyrhizobium RepID=HUPG_BRAJA Length = 148 Score = 125 bits (315), Expect = 3e-28, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 5/123 (4%) Query: 14 MLARGWTPVSESRLDDWLTQAPDG----VVLLSSDPKRTPEVSDNPVMIGELLREFPDYT 69 + G V + +D +L A + V+L + DP R PE +D V++ EL+ F Sbjct: 10 LTRHGLNEVDAATVDHFLGAADEAGAIAVLLSAGDPNRFPEATDVAVVLPELIAAFGGRL 69 Query: 70 WQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 IA + A+G RFGV P + G G++ I W+ ++ + L++ + Sbjct: 70 RGAVIARGD-ESALGQRFGVRVQPTLIFVAKGETLGLIAKIQDWSVYVDRITKLIDRPRG 128 Query: 130 RAS 132 +++ Sbjct: 129 QSA 131 >UniRef50_A0P1N5 HupG protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1N5_9RHOB Length = 144 Score = 124 bits (312), Expect = 8e-28, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 7 FDALWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREF 65 F L Q ++ R G+ VS L +V D +R E +D V++ EL + Sbjct: 2 FSPLLQSIIDREGYEVVSHETLASTAQAHEFAMVFFPGDAERLAESNDVAVVLPELGKAL 61 Query: 66 PDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 + + + + + R+ FPA + G+Y GVL GI WA+ + + ++ Sbjct: 62 MGRVATL-VVERDSERELQRRYLFNAFPAIVFLRRGDYLGVLQGILDWADYLEQIPDILG 120 Query: 126 PQ 127 + Sbjct: 121 RE 122 >UniRef50_A1KC54 Hydrogenase-1 operon protein hyaE n=1 Tax=Azoarcus sp. BH72 RepID=A1KC54_AZOSB Length = 152 Score = 124 bits (312), Expect = 8e-28, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 1 MSNDTPFDALWQRMLAR-GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIG 59 M++ + QR+ R G+ + S L + V+LL+ DP R PE D V++ Sbjct: 1 MTSPDALENALQRLAQRDGFQRLEASDLPAFAAAPGTAVLLLTDDPVRCPEAWDMVVVLP 60 Query: 60 ELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT------GGNYRGVLNGIHPW 113 E L+ P + A+A E S AI FG+ R+PA LV G +Y G L G+ W Sbjct: 61 EALKAVPG--LRPAVAAPEASRAIAAGFGITRYPALLVLRGEGAAPGHDYVGALEGMRDW 118 Query: 114 AELINLMRGLVEPQQER 130 L+ + L R Sbjct: 119 QVLVQSLATLAAAPAGR 135 >UniRef50_B2JX96 Hydrogenase-1 expression HyaE n=1 Tax=Burkholderia phymatum STM815 RepID=B2JX96_BURP8 Length = 148 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Query: 7 FDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLS-SDPKRTPEVSDNPVMIGELLREF 65 + L + +L +G+ + D A +V L +P R E D V++ E++R+F Sbjct: 12 LECLRELLLKQGFLEQQNNTFDRIAVGARTPLVTLPLGNPARHSEFLDLTVVLPEIVRQF 71 Query: 66 PDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGL 123 +++ A A S AI +RFGV R PA + G Y G + G+ + + + Sbjct: 72 GPDSFRAAFATPPASAAIANRFGVLRRPALIFLREGCYLGAIEGLRDREDYLQCFTRI 129 >UniRef50_D2LGL7 Hydrogenase-1 expression HyaE n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL7_RHOVA Length = 150 Score = 123 bits (308), Expect = 2e-27, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 8 DALWQRM-LARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP 66 + + + G+T V+E+ LD +L D V+ D R E +D V++ ELL+ FP Sbjct: 3 SPMIEALPARHGFTTVTEATLDAFLAAHADSVLFFPGDTDRLVESADVAVILPELLKSFP 62 Query: 67 DYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 A+ + + RF FPA + G Y G + + W E + + ++ Sbjct: 63 HVA--PALVEKASERPLQLRFRFNAFPALVFLRGDGYLGAITRVLNWPEYMREIGAILAS 120 Query: 127 Q 127 + Sbjct: 121 E 121 >UniRef50_P28149 Hydrogenase expression/formation protein hupG n=2 Tax=Rhizobium RepID=HUPG_RHILV Length = 149 Score = 121 bits (304), Expect = 6e-27, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 8 DALWQRMLARGW-TPVSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELL 62 AL + + R V E+ +D +L + + V+ + DP + PE D V++ EL+ Sbjct: 3 SALVRALNERAHLPVVDETNIDAFLAPAAGEPDNAVLFFTGDPAQRPEADDVAVVLPELM 62 Query: 63 REFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRG 122 + F + A+ + + RF V P+ +V GVL I W+E + + Sbjct: 63 QVFRGRL-RGAVVRRATEDKLKARFNVVVMPSLVVTRRDQPVGVLGKIRDWSEYVEKISA 121 Query: 123 LVEPQQE 129 + P Sbjct: 122 WLSPDVP 128 >UniRef50_Q478M0 Hydrogenase-1 expression HyaE n=1 Tax=Dechloromonas aromatica RCB RepID=Q478M0_DECAR Length = 152 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 2 SNDTPFDALWQRMLA-RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGE 60 ++ + RM G+ V S+ ++ A +LL+ DP+R EV D V++ E Sbjct: 10 TSLEKLETAIGRMQQKHGFCRVDNSK-PEF--PAGLTALLLTEDPQRNLEVLDACVILPE 66 Query: 61 LLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLM 120 L+ + +A + + A+ ++GV R PA + G + G+LNGI W E + + Sbjct: 67 ALKPVAAQIARW-VAGPDFAPALMAQYGVPRAPAVVFLRDGQFVGILNGIRDWGEYQSEV 125 Query: 121 RGLVEPQQE 129 L+ + Sbjct: 126 ARLLNGPVQ 134 >UniRef50_Q07S96 Hydrogenase-1 expression HyaE n=6 Tax=Rhodopseudomonas palustris RepID=Q07S96_RHOP5 Length = 135 Score = 105 bits (261), Expect = 5e-22, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 40 LLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT 99 D R PE +D V++ +L++ FP AI E + RFGV P+ + Sbjct: 38 FFRGDLARWPETADLAVVLPQLIKAFPGRL-TAAIVAAEAERDLMRRFGVSVCPSLALVR 96 Query: 100 GGNYRGVLNGIHPWAELINLMRGLVEPQQERAS 132 G GV+ I W+ + + ++ RA+ Sbjct: 97 PGRTLGVIPKIQDWSSYVARITAMLADDDLRAA 129 >UniRef50_A7IHC9 Hydrogenase-1 expression HyaE n=3 Tax=Xanthobacteraceae RepID=A7IHC9_XANP2 Length = 136 Score = 105 bits (261), Expect = 5e-22, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 4/130 (3%) Query: 4 DTPFDALWQRML-ARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELL 62 D L +R++ R W + D A D + L + K E D V++ EL+ Sbjct: 8 DPNLHPLVRRLVSERAWPYLEAPE-DTARLDARDHFLFLPAHGKAHLESPDIAVVLPELV 66 Query: 63 REFPDYT-WQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMR 121 + A+A + A+ D PA +V G G ++ + W E + + Sbjct: 67 KALGGEAVLGGAVAGPKTEAALRDAL-SLALPAIVVVRAGLPVGAISRMRDWDEYLERLG 125 Query: 122 GLVEPQQERA 131 L++ Sbjct: 126 ALLKTPSAAT 135 >UniRef50_A5FVC9 Hydrogenase-1 expression HyaE n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FVC9_ACICJ Length = 132 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 17 RGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIAD 76 G + L+ L + +VL + DP R E+ D V++ EL + F ++ A+ D Sbjct: 14 EGVRELGGDGLEAALAE-GTTLVLFTGDPARHREIDDVAVIVPELAKAFAGR-FRCAMVD 71 Query: 77 LEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 ++ A RF V P ++ G G + + WAE + + G+++ Sbjct: 72 PDRERAAAARFRVVVRPTLVLVHEGAMIGSVARMRSWAEYLEAIGGMLDR 121 >UniRef50_B2IJ34 Hydrogenase-1 expression HyaE n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJ34_BEII9 Length = 131 Score = 102 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 9/123 (7%) Query: 9 ALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP-- 66 L +R++ P+ E+ L A ++ L S ++ E D ++ +LL+ Sbjct: 8 PLVRRLVEEHRMPLVETDLP----PAGLRLLFLPSHERQHLETPDIAAVLPDLLQVCRKL 63 Query: 67 ---DYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGL 123 + A+A +G PA +V G GV+ + WA+ + + + Sbjct: 64 LPEGVNIEGAVAGSALEARLGAAIDGLSLPALIVMDGQTPIGVIARMRDWADYLARFKAI 123 Query: 124 VEP 126 + P Sbjct: 124 LAP 126 >UniRef50_O66899 Uncharacterized protein aq_668 n=2 Tax=Aquificaceae RepID=Y668_AQUAE Length = 112 Score = 98.6 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 9/110 (8%) Query: 17 RGWTPVSESRLDDWLTQAPDGVVLLSSDP--KRTPEVSDNPVMIGELLREFPDYTWQVAI 74 + ++E L + + + V+ + S+ + E+ D V+ EL + F + Sbjct: 8 QNLKRINEEDLRNLMEKGETFVLYVRSERLYDKVKEIFDVDVVFPELAKSFEGIPFYWGD 67 Query: 75 ADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 AD + + P+ L+F G L GI WAE ++ + Sbjct: 68 ADELKELNVIP-------PSVLIFKEGKPVEFLQGIKTWAEYTRKLKESL 110 >UniRef50_A7BI71 Putative uncharacterized protein hupG n=1 Tax=Hydrogenobacter thermophilus RepID=A7BI71_HYDTH Length = 103 Score = 87.0 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 6/100 (6%) Query: 26 RLDDWLTQAPDGVVLLSSDPKR--TPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAI 83 L+ L + + + S+ K+ E+ D V++ EL R F +I E E + Sbjct: 8 ELESMLAEGKTLALYVYSESKKDTLRELFDTQVVVPELERAFDSKVEFYSINADEHPEIL 67 Query: 84 GDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGL 123 ++ P+ ++F G L GI W E + + L Sbjct: 68 RR----YKLPSLVLFKEGVEVSKLEGIKAWNEYVEALSCL 103 >UniRef50_O28984 Thioredoxin (Trx-3) n=3 Tax=cellular organisms RepID=O28984_ARCFU Length = 134 Score = 45.0 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%) Query: 22 VSESRLDDWLTQAPDGVVLLSSD---PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE 78 ++ S D+ L + VV ++ P + +I EL +E+ + E Sbjct: 35 LNSSNFDETLKNNENVVVDFWAEWCMPCKM-----IAPVIEELAKEYAGKVVFGKLNTDE 89 Query: 79 QSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 I R+G+ P + F G L G P +EL ++ + Sbjct: 90 NPT-IAARYGISAIPTLIFFKKGKPVDQLVGAMPKSELKRWVQRNL 134 >UniRef50_Q67S09 Thioredoxin n=1 Tax=Symbiobacterium thermophilum RepID=Q67S09_SYMTH Length = 108 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 8/87 (9%) Query: 20 TPVSESRLDDWLTQAPDGVVLLSSD--PKRTPEVSDNPVMIGELLREFPDYTWQVAIADL 77 ++ D+ + + P +V ++D P + D E FP+ + A+ D Sbjct: 2 QRLTAETFDEAVREHPHLIVNFTADWCPD-CRRIKDAYAGFPE---RFPEIAF--AVVDT 55 Query: 78 EQSEAIGDRFGVFRFPATLVFTGGNYR 104 E+S + +RF V P+ LVF G Sbjct: 56 EESPDLAERFDVRGIPSLLVFRDGELI 82 >UniRef50_UPI000178964F Thioredoxin domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178964F Length = 106 Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 3/107 (2%) Query: 19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE 78 + + Q +V + P ++ EL RE + D + Sbjct: 3 LPRLDAGSFQSSINQNGVTLVEFGA--AWCPPCKVLLPILEELSREEAGRLDIYQV-DCD 59 Query: 79 QSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 +S + +FG+ P +VF G L G+ P + + V Sbjct: 60 ESPELAAQFGIMSMPTVIVFHNGEPADKLIGLRPKSVYQAALGRYVS 106 >UniRef50_C6D5I5 Thioredoxin n=2 Tax=Bacilli RepID=C6D5I5_PAESJ Length = 103 Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 57 MIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAEL 116 ++ EL E +A ++++ + +FGV P ++F G + G+ L Sbjct: 37 IVEELATELEGQA-TIAKINVDEEPELASQFGVMSIPTLILFKDGQPVDKMVGVQSKDAL 95 Query: 117 INLMRGLV 124 + G + Sbjct: 96 KAKISGQL 103 >UniRef50_P66929 Thioredoxin n=59 Tax=Bacteria RepID=THIO_HELPJ Length = 106 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 57 MIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAEL 116 +I EL E+ + EQ E + +FG+ P L G L G+ L Sbjct: 39 VIDELASEYEGKAKICKVNTDEQEE-LSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVAL 97 Query: 117 INLMRGLVE 125 + L+ Sbjct: 98 KEQLNKLLG 106 >UniRef50_B1VJ29 Thioredoxin n=2 Tax=Corynebacterium RepID=B1VJ29_CORU7 Length = 107 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 58 IGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELI 117 + EL E VA ++++ A+ F V PA +VF G G+ P L+ Sbjct: 42 LEELAEEMDGRAV-VAKVNVDEERALAAMFQVMSIPALMVFKDGKKVAEFTGLQPKGTLV 100 Query: 118 NLMRGL 123 + L Sbjct: 101 EKLESL 106 >UniRef50_UPI000169923D putative thioredoxin protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169923D Length = 214 Score = 42.3 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 61 LLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLM 120 L + V++ EQ +A+ RFGV P+ +F G G+ A+ ++ Sbjct: 30 LANSYRGRFLLVSVNTDEQ-KALAARFGVRTLPSLKLFLKGECVEEYQGMQAEADYPQMI 88 Query: 121 RGLVEPQQERAS 132 + Q ++ + Sbjct: 89 DRHLGRQLDQTA 100 >UniRef50_C9LNQ1 Thioredoxin n=1 Tax=Dialister invisus DSM 15470 RepID=C9LNQ1_9FIRM Length = 110 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 1/73 (1%) Query: 54 NPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW 113 ++ ++ D+++ + + F + P +VF G ++G P Sbjct: 39 MAPVLESAEQQL-GDKINFVKVDVDEQQQLAAEFDIMSIPTLVVFKDGKPVKRMSGYRPL 97 Query: 114 AELINLMRGLVEP 126 + ++ VE Sbjct: 98 DTFVEELKSAVES 110 >UniRef50_A7B427 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B427_RUMGN Length = 103 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 6/102 (5%) Query: 21 PVSESRLDDWLTQAPDGVV--LLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE 78 V+ + ++ V+ + + + D ++ E+ +E+ I ++E Sbjct: 4 RVTAKNYPQEVLRSETPVLVEFFAVWCGKCAMMED---VLDEIAKEYDGRVKVCQI-EIE 59 Query: 79 QSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLM 120 +S + F V PA +VF G NG+ LI ++ Sbjct: 60 ESAVLAAEFEVGIVPAFVVFRDGKPVNYANGVLAKDVLIRML 101 >UniRef50_Q5QY72 Thioredoxin domain-containing protein n=2 Tax=Idiomarina RepID=Q5QY72_IDILO Length = 283 Score = 41.6 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 1/72 (1%) Query: 57 MIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAEL 116 ++ +L ++ D I EQ E + +FG+ P F G G+ E+ Sbjct: 45 VLEKLAMQYSDQVILAKINCDEQQE-LAAQFGIRSLPTVAFFKDGQPVDSFGGVKTEGEI 103 Query: 117 INLMRGLVEPQQ 128 ++ + Sbjct: 104 QEILTKHLPSPS 115 >UniRef50_A9IGC2 Putative thioredoxin n=6 Tax=Bordetella RepID=A9IGC2_BORPD Length = 132 Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 5/112 (4%) Query: 21 PVSESRLDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADL 77 PV + D + +AP V L + ++ + D AD+ Sbjct: 20 PVGSADFDQAVVEAPGDDLRCVFLWGQNCYNCNLFKQAALLH--RQALLDLGLTWFQADV 77 Query: 78 EQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 EA+G RF + P +++ GG G + G + L++ Sbjct: 78 YADEALGRRFSLHGVPTFVLYRGGRRLGRITGWPGLPRFTEAIGRLLKNPSG 129 >UniRef50_C6CV88 Thioredoxin domain protein n=2 Tax=Paenibacillus RepID=C6CV88_PAESJ Length = 105 Score = 41.2 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 56 VMIGEL--LREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW 113 V++ L L++ + D ++S I FGV P +VF G G+ P Sbjct: 35 VLLPILDELQQEEGERVSILQVDCDESPEIASEFGVMSMPTVIVFHNGEPVDKYIGLRPK 94 Query: 114 AELINLMRG 122 + Sbjct: 95 DVYQQAIAR 103 >UniRef50_UPI0001C3605D thioredoxin n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3605D Length = 103 Score = 41.2 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 57 MIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIH 111 ++ ++ +EF + D +Q++ + +GV +P ++ G G L G+ Sbjct: 37 VLKDVEKEF-GDDLTILKVDFDQNKDLTAEYGVTGYPTLVLLKEGEEVGRLQGLQ 90 >UniRef50_A6LXL9 Thioredoxin n=5 Tax=Clostridium RepID=A6LXL9_CLOB8 Length = 105 Score = 41.2 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 54 NPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW 113 + E E + D++ SE I +++G++ P +VF G L G P Sbjct: 36 LAPVFEEASMEARGKAKFFKV-DIDASERIAEKYGIYAVPTMIVFKDGKPVENLAGFMPK 94 Query: 114 AELINLMRGLV 124 ++N + + Sbjct: 95 QNILNKINAHL 105 >UniRef50_C2MCP9 Thioredoxin n=7 Tax=Bacteroidales RepID=C2MCP9_9PORP Length = 105 Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 57 MIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAEL 116 MI EL EF + E S+ + ++G+ P L F GG L G A+L Sbjct: 38 MIDELAEEFNGKIIIGKVNVDENSD-LPSQYGIRNIPTILFFKGGEMVSKLVGAQSKAKL 96 Query: 117 INLMRGLVE 125 + L++ Sbjct: 97 QEEAQKLLD 105 >UniRef50_Q9Y955 Thioredoxin n=1 Tax=Aeropyrum pernix RepID=Q9Y955_AERPE Length = 159 Score = 40.4 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 10/120 (8%) Query: 10 LWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT 69 + R ++ + L L+Q V+L ++ E +++ ++L Sbjct: 32 IISRRSSQILVDIDNENLPKVLSQHRVAVILFTA------EWCGRCILMQDILTRIASRL 85 Query: 70 WQVAIA----DLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 ++ I D++++ ++ +R+GV P TL+ G L G +L+ + + Sbjct: 86 FRDDIVFGRVDVDRAFSLAERYGVQHIPTTLIIVEGRVVDALVGSVSEEKLLERINRELT 145 >UniRef50_A8GAW9 Thioredoxin domain n=9 Tax=Gammaproteobacteria RepID=A8GAW9_SERP5 Length = 294 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 14 MLARGWTPVSESRLDDWLTQAPD--GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQ 71 MLA+ ++E+ L L Q+ V SD + ++ +L E+ + Sbjct: 11 MLAQAVVDINETNLHQTLEQSMSMPVVFYFWSDRSQH--CLQLTPILDKLAAEYAGQ-FL 67 Query: 72 VAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNG 109 +A D + +AI +FG+ P +F G G Sbjct: 68 LAKVDCDAEQAIAAQFGLRSLPTVYLFKDGQPVDGFQG 105 >UniRef50_C0QLX1 TrxA1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLX1_DESAH Length = 148 Score = 40.0 bits (92), Expect = 0.021, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 57 MIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAEL 116 ++ L + + ++ +++++ + R+ + P+ + F G G E+ Sbjct: 82 VLSGLAKAYAGRI-KIVKVNVDENASTAARYRIMSLPSLVFFKAGKVVDSTVGALSRGEI 140 Query: 117 INLMRGLV 124 ++ L+ Sbjct: 141 ETRLKPLL 148 >UniRef50_Q7URA6 Probable thioredoxin n=1 Tax=Rhodopirellula baltica RepID=Q7URA6_RHOBA Length = 506 Score = 40.0 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 19/53 (35%) Query: 75 ADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 +++ + RFG+ P +V G L G+ +EL + Sbjct: 80 VNVDNEAHLTRRFGIRSTPTYVVLREGKEVTRLLGVQTVSELTAALNQSAAGP 132 >UniRef50_B9ZL80 Thioredoxin n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZL80_9GAMM Length = 291 Score = 40.0 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 70 WQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 +++A + ++ +A+ ++GV P +VF G G+ P + ++ +E + Sbjct: 63 FRLAKVNSDEQQALAQQYGVRSLPTVMVFRHGKPVDQFMGVQPEPNIRAMIDRYLEKPSD 122 Query: 130 R 130 R Sbjct: 123 R 123 >UniRef50_Q5UWA6 Thioredoxin n=1 Tax=Haloarcula marismortui RepID=Q5UWA6_HALMA Length = 136 Score = 39.6 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 59 GELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIH 111 + R VA D++ ++ + ++GV P L+F G L G+ Sbjct: 71 PVVERIAAGTAATVAKVDIDANQQLAAKYGVRSVPTLLLFVDGEPVERLVGMQ 123 >UniRef50_B7PHA0 Protein disulfide isomerase, putative n=1 Tax=Ixodes scapularis RepID=B7PHA0_IXOSC Length = 395 Score = 39.6 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 10/97 (10%) Query: 20 TPVSESRLDDWLTQAPDGVVLLS---SDPKRTPEVSDNPVMIGELLREFPDYTW-QVAIA 75 +S S + + Q V + KR D +L R+F T +VA Sbjct: 287 MELSASNFEGVVAQGVTFVKFFAPWCGHCKRLAPTWD------DLARKFAARTEVKVAKV 340 Query: 76 DLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHP 112 D EA+ + V +P ++F G NG Sbjct: 341 DCTVYEALCNSHEVQGYPTLVLFKDGKRAAEFNGARD 377 >UniRef50_D2RFL9 Thioredoxin n=2 Tax=Archaeoglobaceae RepID=D2RFL9_ARCPR Length = 130 Score = 38.9 bits (89), Expect = 0.047, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 9/106 (8%) Query: 22 VSESRLDDWLTQAPDGVVLLSSD---PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE 78 + + ++ + + VV ++ P + +I EL +E+ + E Sbjct: 31 LDSTNFKKFIEENENVVVDFWAEWCGPCKL-----ISPIIDELAKEYAGKVAFGKLNIDE 85 Query: 79 QSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 I ++G+ P + F G ++ G +P +EL + + Sbjct: 86 -DRTIAMQYGISAIPTLIFFKKGKAVSMIVGAYPKSELKRWIEKYL 130 >UniRef50_P77395 Uncharacterized protein ybbN n=157 Tax=Enterobacteriaceae RepID=YBBN_ECOLI Length = 284 Score = 38.9 bits (89), Expect = 0.056, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 5/117 (4%) Query: 14 MLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA 73 M ++ES L L Q+ VL +R+ ++ L ++ + +A Sbjct: 1 MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ-FILA 59 Query: 74 IADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 D + + I +FG+ P +F G G P +R L++ R Sbjct: 60 KLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQP----EEAIRALLDKVLPR 112 >UniRef50_Q72IL5 Thioredoxin n=3 Tax=Thermus RepID=Q72IL5_THET2 Length = 140 Score = 38.5 bits (88), Expect = 0.075, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 1/70 (1%) Query: 57 MIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAEL 116 ++ EL RE V + E + R+GV P ++F G G P L Sbjct: 71 ILEELAREHAGRLKVVKVNVDEHP-GLAARYGVRSVPTLVLFRRGAPVATWVGASPKRVL 129 Query: 117 INLMRGLVEP 126 +R +E Sbjct: 130 EERLRPYLEG 139 >UniRef50_B8GTW1 Thioredoxin n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTW1_THISH Length = 286 Score = 38.1 bits (87), Expect = 0.086, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 57 MIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAEL 116 ++ +L + + +A + ++ +A+ R+G+ P ++F G G+ P Sbjct: 46 VLAKLAAAYGGR-FILAKINSDEQQALASRYGIRSLPTVMLFRHGKPVDQFMGVQP---- 100 Query: 117 INLMRGLVEPQQERAS 132 + +R L+E R S Sbjct: 101 ESTIRALLEKHLPRPS 116 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.136 0.356 Lambda K H 0.267 0.0421 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 721,951,999 Number of Sequences: 3077464 Number of extensions: 24478202 Number of successful extensions: 84629 Number of sequences better than 1.0e-01: 60 Number of HSP's better than 0.1 without gapping: 55 Number of HSP's successfully gapped in prelim test: 54 Number of HSP's that attempted gapping in prelim test: 84505 Number of HSP's gapped (non-prelim): 119 length of query: 132 length of database: 1,040,396,356 effective HSP length: 97 effective length of query: 35 effective length of database: 741,882,348 effective search space: 25965882180 effective search space used: 25965882180 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 87 (38.1 bits)