BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (94 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga... 155 4e-37 UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G... 153 2e-36 UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr... 142 3e-33 UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel... 139 3e-32 UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba... 138 4e-32 UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr... 129 3e-29 UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr... 114 8e-25 UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr... 114 1e-24 UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par... 110 1e-23 UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 T... 107 9e-23 UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr... 107 1e-22 UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr... 106 2e-22 UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr... 101 9e-21 UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al... 100 1e-20 UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce... 99 3e-20 UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al... 99 6e-20 UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr... 98 8e-20 UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr... 97 2e-19 UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al... 97 2e-19 UniRef50_UPI0001699D1F integration host factor, beta subunit n=1... 93 3e-18 UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr... 91 9e-18 UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr... 89 4e-17 UniRef50_A6B8A7 Integration host factor beta-subunit n=1 Tax=Vib... 86 4e-16 UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T... 86 5e-16 UniRef50_A8PM48 Integration host factor, beta subunit n=1 Tax=Ri... 84 1e-15 UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T... 84 2e-15 UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba... 83 2e-15 UniRef50_A0L712 Histone family protein DNA-binding protein n=5 T... 81 1e-14 UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ... 79 6e-14 UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding p... 78 9e-14 UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID... 77 2e-13 UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D... 77 2e-13 UniRef50_A3ER44 Putative integration host factor, beta-subunit n... 76 3e-13 UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID... 75 5e-13 UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D... 75 5e-13 UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p... 75 6e-13 UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctom... 75 7e-13 UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi... 75 7e-13 UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH... 75 7e-13 UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C... 74 1e-12 UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ... 74 2e-12 UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep... 74 2e-12 UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ... 73 2e-12 UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH 73 2e-12 UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc... 73 3e-12 UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ... 72 4e-12 UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Cur... 72 4e-12 UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D... 72 7e-12 UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T... 72 7e-12 UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT 72 7e-12 UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ... 72 8e-12 UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ... 71 1e-11 UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios... 71 1e-11 UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T... 71 1e-11 UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube... 70 2e-11 UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ... 70 2e-11 UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia... 70 2e-11 UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa... 70 2e-11 UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T... 70 3e-11 UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti... 70 3e-11 UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=... 69 3e-11 UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T... 69 3e-11 UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ... 69 3e-11 UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 T... 69 4e-11 UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH 69 5e-11 UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie... 69 6e-11 UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta... 69 7e-11 UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=P... 68 9e-11 UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T... 68 1e-10 UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R... 68 1e-10 UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu... 68 1e-10 UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T... 67 1e-10 UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re... 67 2e-10 UniRef50_Q1V1Q3 Integration host factor beta-subunit (IHF-beta) ... 67 2e-10 UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T... 67 2e-10 UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_... 67 2e-10 UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T... 67 2e-10 UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 T... 67 2e-10 UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso... 67 2e-10 UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II... 67 3e-10 UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ... 66 3e-10 UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopi... 66 3e-10 UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID... 66 3e-10 UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi... 66 3e-10 UniRef50_C6XFR8 Integration host factor, beta subunit n=1 Tax=Ca... 66 4e-10 UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter... 65 5e-10 UniRef50_B6BR84 Integration host factor beta-subunit n=3 Tax=roo... 65 5e-10 UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ... 65 5e-10 UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo... 65 5e-10 UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact... 65 5e-10 UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria Re... 65 5e-10 UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T... 65 6e-10 UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri... 65 6e-10 UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T... 65 6e-10 UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T... 65 7e-10 UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 ... 65 7e-10 UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A... 65 8e-10 UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re... 65 9e-10 UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a... 65 1e-09 UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba... 64 1e-09 UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T... 64 1e-09 UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T... 64 1e-09 UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T... 64 1e-09 UniRef50_D0RRC9 Integration host factor subunit beta (IHF-beta) ... 64 1e-09 UniRef50_Q6ANC3 Related to integration host factor, alpha subuni... 64 2e-09 UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Ta... 64 2e-09 UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet... 63 2e-09 UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T... 63 2e-09 UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil... 63 3e-09 UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida... 63 3e-09 UniRef50_B8II37 Histone family protein DNA-binding protein n=1 T... 63 3e-09 UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI... 63 3e-09 UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A... 63 3e-09 UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T... 63 3e-09 UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T... 63 4e-09 UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria Re... 62 4e-09 UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ... 62 4e-09 UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T... 62 5e-09 UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=... 62 5e-09 UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria... 62 5e-09 UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 T... 62 6e-09 UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr... 62 7e-09 UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha... 62 7e-09 UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr... 62 7e-09 UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1... 61 9e-09 UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ... 61 9e-09 UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph... 61 9e-09 UniRef50_UPI0000382BC5 COG0776: Bacterial nucleoid DNA-binding p... 61 1e-08 UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re... 61 1e-08 UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla... 61 1e-08 UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B... 60 1e-08 UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T... 60 2e-08 UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0... 60 2e-08 UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T... 60 2e-08 UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D... 60 2e-08 UniRef50_O67923 Integration host factor beta subunit n=2 Tax=Aqu... 60 2e-08 UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales Rep... 60 2e-08 UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabac... 60 2e-08 UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ... 60 2e-08 UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T... 60 2e-08 UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T... 60 3e-08 UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga... 60 3e-08 UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G... 60 3e-08 UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=D... 60 3e-08 UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 T... 60 3e-08 UniRef50_C8PNN7 DNA-binding protein, HU family n=1 Tax=Treponema... 60 3e-08 UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2... 59 4e-08 UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteob... 59 4e-08 UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D... 59 5e-08 UniRef50_B5JEX1 DNA-binding protein HU n=1 Tax=Verrucomicrobiae ... 59 5e-08 UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A... 59 5e-08 UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabac... 59 6e-08 UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R... 59 7e-08 UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete... 58 7e-08 UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand... 58 8e-08 UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace... 58 9e-08 UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium Re... 58 9e-08 UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabac... 58 1e-07 UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l... 58 1e-07 UniRef50_Q57267 DNA-binding protein HU n=41 Tax=Borrelia RepID=D... 58 1e-07 UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabac... 57 1e-07 UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G... 57 1e-07 UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri... 57 1e-07 UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter... 57 2e-07 UniRef50_A3RUQ6 DNA-binding protein HU n=4 Tax=Betaproteobacteri... 57 2e-07 UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T... 57 2e-07 UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin... 57 2e-07 UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto... 57 3e-07 UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P... 57 3e-07 UniRef50_B2ILK2 Histone family protein DNA-binding protein n=10 ... 56 3e-07 UniRef50_B3DWZ9 Bacterial nucleoid DNA-binding protein n=1 Tax=M... 56 3e-07 UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 ... 56 3e-07 UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s... 56 3e-07 UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium Rep... 56 4e-07 UniRef50_B9XSG3 Histone family protein DNA-binding protein n=4 T... 56 4e-07 UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D... 56 4e-07 UniRef50_C6JJT3 Predicted protein n=4 Tax=Fusobacterium RepID=C6... 55 5e-07 UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th... 55 6e-07 UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B... 55 6e-07 UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=... 55 6e-07 UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 T... 55 7e-07 UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T... 55 7e-07 UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=K... 55 8e-07 UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 ... 55 8e-07 UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone... 55 8e-07 UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ... 55 8e-07 UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=B... 55 8e-07 UniRef50_C1DT75 DNA-binding protein HU 1 (DNA-binding protein II... 55 9e-07 UniRef50_P64387 Probable DNA-binding protein HU n=12 Tax=Chlamyd... 55 1e-06 UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=R... 55 1e-06 UniRef50_C1EA69 Predicted protein n=2 Tax=Micromonas RepID=C1EA6... 54 1e-06 UniRef50_B2V9T2 Histone family protein DNA-binding protein n=3 T... 54 1e-06 UniRef50_Q12P41 Histone-like DNA-binding protein n=9 Tax=Shewane... 54 1e-06 UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ... 54 1e-06 UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T... 54 1e-06 UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 ... 54 2e-06 UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R... 54 2e-06 UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae Re... 54 2e-06 UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 54 2e-06 UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide... 54 2e-06 UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T... 54 2e-06 UniRef50_C6HZV1 Putative integration host factor, alpha subunit ... 54 2e-06 UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein... 53 2e-06 UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 ... 53 2e-06 UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococc... 53 3e-06 UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 53 3e-06 UniRef50_D2QT12 Histone family protein DNA-binding protein n=17 ... 53 3e-06 UniRef50_C7H232 DNA binding protein HU n=3 Tax=Ruminococcaceae R... 53 3e-06 UniRef50_Q2SSG4 DNA-binding protein, HU n=1 Tax=Mycoplasma capri... 53 3e-06 UniRef50_Q11NU3 DNA-binding protein HU n=74 Tax=Bacteroidetes Re... 53 3e-06 UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T... 53 3e-06 UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A... 52 4e-06 UniRef50_B4U8N4 Histone family protein DNA-binding protein n=1 T... 52 5e-06 UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 T... 52 5e-06 UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=C... 52 5e-06 UniRef50_Q4A8U1 Bacterial nucleoid DNA-binding protein n=5 Tax=M... 52 5e-06 UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell... 52 5e-06 UniRef50_B1A4K2 Integration host factor subunit A-like protein n... 52 6e-06 UniRef50_Q73M03 DNA-binding protein, HU family n=1 Tax=Treponema... 52 6e-06 UniRef50_B4U6N1 Histone family protein DNA-binding protein n=1 T... 52 6e-06 UniRef50_Q8I3A2 Bacterial histone-like protein n=5 Tax=Plasmodiu... 52 6e-06 UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus... 52 6e-06 UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ... 52 6e-06 UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R... 52 7e-06 UniRef50_A3EV93 Putative integration host factor, alpha subunit ... 52 7e-06 UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteri... 52 7e-06 UniRef50_C3Q103 DNA-binding protein HU n=2 Tax=Bacteroides RepID... 52 7e-06 UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 T... 52 8e-06 UniRef50_C8X523 Histone family protein DNA-binding protein n=2 T... 52 8e-06 UniRef50_B3DZP2 Bacterial nucleoid DNA-binding protein n=2 Tax=V... 51 9e-06 UniRef50_B7J8S4 DNA-binding protein HU family protein n=1 Tax=Ac... 51 9e-06 UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptun... 51 1e-05 UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen... 51 1e-05 UniRef50_C6ZBE9 DNA binding protein HU n=7 Tax=Bacteroides RepID... 51 1e-05 UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 T... 51 1e-05 UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T... 51 1e-05 UniRef50_C3CT70 DNA-binding protein HU n=1 Tax=Bacillus thuringi... 51 1e-05 UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytop... 51 1e-05 UniRef50_B6YQX6 DNA-binding protein HU n=1 Tax=Candidatus Azobac... 51 1e-05 UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=... 51 1e-05 UniRef50_O67461 DNA-binding protein HU n=3 Tax=Aquificaceae RepI... 51 1e-05 UniRef50_A8PMN2 Integration host factor subunit alpha (IHF-alpha... 50 2e-05 UniRef50_A4MZU5 Integration host factor alpha-subunit n=1 Tax=Ha... 50 2e-05 UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID... 50 2e-05 UniRef50_C6IN85 DNA-binding protein HU n=2 Tax=Bacteroides RepID... 50 2e-05 UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepI... 50 2e-05 UniRef50_Q9ZL08 DNA-binding protein HU n=24 Tax=Epsilonproteobac... 50 2e-05 UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacte... 50 2e-05 UniRef50_C7LTK6 Histone family protein DNA-binding protein n=1 T... 50 2e-05 UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale... 50 3e-05 >UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria RepID=IHFB_AERS4 Length = 94 Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 73/92 (79%), Positives = 81/92 (88%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKS+LIE+LA + H+PAK VE A+KE+LE MASTL G+RIEIRGFGSFSLHYRAPR Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTGDKVEL GKYVPHFKPGKELR+R NI Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVNI 92 >UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=Gammaproteobacteria RepID=IHFB_SHEDO Length = 95 Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/91 (79%), Positives = 81/91 (89%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE+LAT+QS + AK VE A+KEMLE MA+TL G+RIEIRGFGSFSLHYRAPRT Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG VEL+GKYVPHFKPGKELR+R + Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERVD 91 >UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria RepID=IHFB_PSEPK Length = 100 Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 67/91 (73%), Positives = 74/91 (81%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIER+ T Q + +K VE A+K MLE M+ LA G+RIEIRGFGSFSLHYRAPR Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG V LEGK+VPHFKPGKELRDR N Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVN 91 >UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms RepID=IHFB_HALHL Length = 102 Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 66/91 (72%), Positives = 76/91 (83%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE +A++Q H+ K VEDAVK+MLEHM+ TLA G+RIEIRGFGSFSLH+R R Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ V L KYVPHFKPGKELR+R N Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERVN 91 >UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria RepID=IHFB_THISH Length = 96 Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 66/91 (72%), Positives = 75/91 (82%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE LA +QSH+ K VE +VK MLEH++ LA G+RIEIRGFGSFSLH+R PR Sbjct: 1 MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ V L GKYVPHFKPGKELR+R N Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERVN 91 >UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria RepID=IHFB_MANSM Length = 94 Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 60/92 (65%), Positives = 72/92 (78%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE L + I K+VE+AVKE+LEHM+ L G+RIEIRGFGSFSLH+R PR Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG +V+L+ K VPHFK GKELR+R + Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERVDF 92 >UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria RepID=IHFB_BORPD Length = 119 Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 55/94 (58%), Positives = 69/94 (73%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI LA + + A+ + AVK ML+ M LA G+RIEIRGFGSFSL R+PR Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPK+G++V + GK VPHFK GKELR+R ++ G Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVDLAG 94 >UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria RepID=IHFB_HERAR Length = 101 Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/91 (60%), Positives = 69/91 (75%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI RLA + + AK + AVK +L+ M+ LA G+RIEIRGFGSF+L+ R PR Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPK+GDKV + K VPHFKPGK+LR+R + Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERVD 91 >UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQA5_9PROT Length = 113 Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 48/91 (52%), Positives = 69/91 (75%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL+++LA + H+ K VE V + +H+++ L QG+R+E+RGFG+FS+ YR RT Sbjct: 1 MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ VE+E K+VP FK GKE+R+R N Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERLN 91 >UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6T8_9PROT Length = 100 Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 48/88 (54%), Positives = 67/88 (76%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +S+LI +LA Q ++ AK VE V+ +L+ +A+T+++G R+EIRGFGSF L+YR PR Sbjct: 6 MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 65 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNPKTG K+E+ KY P FKPGK L++ Sbjct: 66 GRNPKTGAKIEVAAKYHPRFKPGKALKE 93 >UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria RepID=IHFB_NITEC Length = 105 Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 53/88 (60%), Positives = 67/88 (76%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI +LA + + AK E VK +L+ MA +LA+GERIEIRGFGSF L+YR R Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNPK+G+KV + KYVPHFK GK++R+ Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRE 88 >UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria RepID=IHFB_BURTA Length = 107 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 51/91 (56%), Positives = 69/91 (75%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSEL+ +LA++ + K + AVK ML+ M+ L++G RIEIRGFGSF L+ R R Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPK+G+KV++ K+VPHFKPGKELR+R + Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERVD 91 >UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria RepID=IHFB_RALEJ Length = 137 Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 49/91 (53%), Positives = 66/91 (72%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSEL+E+LA + + + + +VK +L+ M+ LA G RIEIRGFGSF L+ R PR Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPK+G++V + K VPHFK GKELR+R + Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVD 91 >UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria RepID=IHFB_OLICO Length = 106 Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 47/94 (50%), Positives = 67/94 (71%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++R+A H+ + VE+ V +LE + S LA+G+R+E+RGFG+FS+ +R R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNP+TG+ V +E K VP FK GKE+R+R N G Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRDG 94 >UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms RepID=IHFB_CAUCN Length = 96 Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 49/94 (52%), Positives = 61/94 (64%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI RLA + H+ K VE V +LE M L G R+E+RGFG+ S+ R RT Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNP+TG+ V++ K+VP FK GKELR R N G Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLNADG 94 >UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria RepID=IHFB_SINMW Length = 103 Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 45/91 (49%), Positives = 64/91 (70%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ +A + H+ + VE+ V +L+ + LA G R+E+RGFG+FS+ R R+ Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TGD V +E K+VP FK GKELR+R N Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLN 91 >UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria RepID=IHFB_RHOCS Length = 93 Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 64/91 (70%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI RLA + H+ + VE V + + + LA+G+R+E+RGFG+FS+ R R Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ V++ K++P FK GK+LR+R N Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLN 91 >UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria RepID=IHFB_PARL1 Length = 110 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 45/91 (49%), Positives = 64/91 (70%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL+ RLA H+ + VE V + + +++ LA+G+R+E+RGFG+FS+ R RT Sbjct: 1 MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ V ++ K VP FK GKELR+R N Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERLN 91 >UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria RepID=IHFB_BRUMB Length = 94 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 66/91 (72%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ +A++ H+ + V + V + + + + LA+G R+E+RGFG+FS+ R R+ Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ V++E K+VP FK GK+LRDR N Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLN 91 >UniRef50_UPI0001699D1F integration host factor, beta subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699D1F Length = 122 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 43/67 (64%), Positives = 51/67 (76%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE + QSH+ + +E A+K M+E M+ L+ GERIEIRGFGSFSLHYR PR Sbjct: 1 MTKSELIEIVRKDQSHLAYRDIELAIKCMIEQMSQALSSGERIEIRGFGSFSLHYRPPRM 60 Query: 61 GRNPKTG 67 GRNPK G Sbjct: 61 GRNPKNG 67 >UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria RepID=Q1D6M8_MYXXD Length = 127 Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 43/91 (47%), Positives = 58/91 (63%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+SELIER+ + +H+P + VE V + E M+ L G RIE+RGFG F + R RT Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG +V + + F GK+LR+R N Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERLN 91 >UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium tumefaciens RepID=IHFB_AGRT9 Length = 102 Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 62/91 (68%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ +A + ++ + E+AV +L+ + L +GER++IR FG+F + +R R+ Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP G+ V +E K+VP F+ GKE+RDR N Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLN 91 >UniRef50_A6B8A7 Integration host factor beta-subunit n=1 Tax=Vibrio parahaemolyticus AQ3810 RepID=A6B8A7_VIBPA Length = 89 Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 39/51 (76%), Positives = 45/51 (88%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSF 51 MTKSELIERL +Q+H+ AK VEDAVK++LEHMASTL G+RIEIRGFGSF Sbjct: 1 MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSF 51 >UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE Length = 112 Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++LIE ++ + + K E V+ + + + +L G++IEIRGFGSF R PR Sbjct: 1 MTKADLIEEVS-RVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG +VE+ K +P+FKP KEL+D N Sbjct: 60 GRNPKTGARVEVPAKKIPYFKPSKELKDVVN 90 >UniRef50_A8PM48 Integration host factor, beta subunit n=1 Tax=Rickettsiella grylli RepID=A8PM48_9COXI Length = 100 Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 57/91 (62%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI +L + + A TV+ +V+ +++ + TL QG RIEIRGFGSFSLHY A R+ Sbjct: 1 MLKSELINQLILKFPQLQASTVKKSVEHLIQLLEQTLHQGHRIEIRGFGSFSLHYNAARS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 NPKT + KY HFK GK L+ N Sbjct: 61 AFNPKTKEHFLAPEKYRIHFKMGKTLKYCMN 91 >UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=A0LI64_SYNFM Length = 96 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE LA + I K E AV + M + L + +R+EIRGFGSF + Sbjct: 1 MTKSELIETLAKAEG-ITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ +E+ K +P FK GKEL++R N Sbjct: 60 GRNPKTGELIEVNSKKLPFFKVGKELKERVN 90 >UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria RepID=Q3A4K6_PELCD Length = 92 Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ LA ++ + K E+ V +L+ M+ TL +G RIEIRGFGS + Sbjct: 1 MNKSELIDALA-EKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+++E++ K +P FK GKELR+R N Sbjct: 60 GRNPKTGEEIEVKPKKLPFFKVGKELRERIN 90 >UniRef50_A0L712 Histone family protein DNA-binding protein n=5 Tax=Magnetococcus sp. MC-1 RepID=A0L712_MAGSM Length = 91 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI +A Q+ + + V + + LA+GER+E+RGFG F R PR Sbjct: 1 MTKSELILTIAAQKG-LTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRA 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+KV +E K HFKPG ++R R + Sbjct: 60 ARNPKTGEKVAVESKTAVHFKPGLDMRKRVD 90 >UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria RepID=B1I182_DESAP Length = 91 Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 59/88 (67%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A +++++ K E A+ MLE + L+ G+++++ GFG+F RA R Sbjct: 1 MNKAELISSVA-EKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG+++++ VP FK GKELR+ Sbjct: 60 GRNPQTGEEIDIAATKVPVFKAGKELRE 87 >UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding protein n=8 Tax=Rhizobiales RepID=C5B6T6_METEA Length = 163 Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 52/89 (58%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +SEL+ RLA Q H+ K E V +L + L G+R+EIRGFG+FS R Sbjct: 59 MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 GRNP+TG+ V + K F+PGK +R R Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQR 147 >UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD Length = 90 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI +A +Q+ + K AV + E + L +G ++++ GFGSF + R+ R Sbjct: 1 MNKTDLINAVA-EQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+++E+ P FKPGK+L+D N Sbjct: 60 GRNPQTGEEIEIPATKNPAFKPGKQLKDAVN 90 >UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC Length = 90 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI +A +Q+ + K AV + E + ++LA+GE++++ GFG+F + RA R Sbjct: 1 MNKTDLINAVA-EQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG ++++ VP FK GK L+D Sbjct: 60 GRNPQTGKEIDIPASKVPAFKAGKALKD 87 >UniRef50_A3ER44 Putative integration host factor, beta-subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ER44_9BACT Length = 98 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 56/89 (62%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+ +LI+R+A + + I + V ++ E M S + +GE +EIR FG F +H+R PR Sbjct: 1 MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 RNP+TG+KV + + F+PGK L+ R Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLR 89 >UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU Length = 92 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A + S + K AV + + + L G++I++ GFG+F + R+ R Sbjct: 1 MNKTELINAVA-EASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG+++E+ VP FKPGK L+D Sbjct: 60 GRNPQTGEEIEIPASKVPAFKPGKALKD 87 >UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA Length = 91 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A ++S + K E A+K ++E + L +GE++++ GFG+F RA R Sbjct: 1 MNKAELITSMA-EKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+T + + + VP FK GKE +D+ N Sbjct: 60 GRNPRTKEVINIPATTVPVFKAGKEFKDKVN 90 >UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation n=3 Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT Length = 89 Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L+ +A Q+S + K + A+ + + + +LA+G++++I GFG+F+L Y RT Sbjct: 1 MNKAQLVTAMA-QKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG +E+EG FK K L+D Sbjct: 60 GRNPQTGASIEIEGANKAVFKASKALKD 87 >UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctomycetaceae RepID=A6CAS4_9PLAN Length = 148 Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E+++ ++ + KT E V++ + + TL +RIE+R FG F + RA R Sbjct: 1 MTKKEIVKVISEEIGLTQLKTKE-IVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 RNP+TGD+V++E KYV FKPGKE+ R Sbjct: 60 ARNPRTGDRVDVEEKYVVTFKPGKEMEKR 88 >UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH73_THEYD Length = 92 Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 57/91 (62%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELIER++ + + K +E + + + M TL++GE+IEIRGF +F + R R Sbjct: 1 MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+++++ + +FK K L++ N Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEALN 91 >UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD Length = 90 Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 59/88 (67%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI ++A +++ + K + V + + +A +LAQG+ +++ GFG+F + RA R Sbjct: 1 MNKTELIHQVA-ERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG+++++ P FK GK+L+D Sbjct: 60 GRNPQTGEEIDIAATKTPAFKAGKQLKD 87 >UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6 Length = 93 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI +A ++S + K E A+K +E + L GE++++ GFG+F RA R Sbjct: 1 MNKSELITSMA-EKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+T +++ + P FK GKEL+++ N Sbjct: 60 GRNPRTKEEITIPASIAPVFKAGKELKEKVN 90 >UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJA9_9BACT Length = 95 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++L+ ++ ++ + I K V V +L + ++A+G IEIRGFG+F L R PR Sbjct: 1 MTKADLV-KIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNPKT KV + + VP FK +E ++ Sbjct: 60 GRNPKTDQKVPVPARTVPTFKFSREFKN 87 >UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH Length = 91 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+L+ + +Q S++ A+ M + S L G+ + I GFGSF + RA RT Sbjct: 1 MNKSDLVAVI-SQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ ++++ VP FK GK L++ N Sbjct: 60 GRNPQTGEAIQIKASKVPAFKAGKLLKESVN 90 >UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae RepID=B4S407_PROA2 Length = 103 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 1 MTKSELIERLATQQSHIPAKT---VEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRA 57 M+K+ L SH T E V + E + +L G+RIEIRGFGSF++ Y+ Sbjct: 1 MSKTTTKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60 Query: 58 PRTGRNPKTGDKVELEGKYVPHFKPGKELR 87 R RNP+TG+KV +E K VP FK KE + Sbjct: 61 ERLARNPRTGEKVSVEAKNVPTFKISKEFK 90 >UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH Length = 89 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ +A + +P A+ M+E + L +G+ + + GFGSF + RA R Sbjct: 1 MNKSELIDAIAAS-ADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNPKTG+++ + P F+PGK L+D Sbjct: 60 GRNPKTGEEITIPSAKTPKFRPGKALKD 87 >UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AXT3_RUMGN Length = 92 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 56/91 (61%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+S+LI+ +A + + + ++ V L+ +A L G++++ GFGSF + RA RT Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+ G ++ +E FK GKEL+D+ N Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKVN 91 >UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2 Tax=Burkholderiaceae RepID=B2AK36_CUPTR Length = 92 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 53/91 (58%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI+ +A + E A+ L + T+A+G+ + + GFGSFS R R Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+K+ ++ F+PG++ +D AN Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDAAN 91 >UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YFH2_9BURK Length = 103 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 52/89 (58%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +S+LI +LA + + I K E AV+ + + MA+ L +G RIEIR FG R T Sbjct: 1 MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 RNP+TG+K++ FK GKELR R Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSR 89 >UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN Length = 90 Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 58/88 (65%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI+ +A + + K + A++ L+ + ++L +GE +++ GFG+F ++ RA RT Sbjct: 1 MNKTDLIDAIA-NAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG ++++ VP F GK L+D Sbjct: 60 GRNPQTGAEIQIAASKVPAFVSGKALKD 87 >UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC Length = 101 Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 5/93 (5%) Query: 1 MTKSELIERLA--TQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M K++LI L+ + S I AK AV+ +L+ + + G+ IEIRGFG F +R P Sbjct: 10 MKKTDLILNLSDSSDLSKIDAKI---AVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKP 66 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 R G NPKT ++ ++ K+VP FKPGK L++ N Sbjct: 67 RQGINPKTSERTQVGEKFVPFFKPGKLLKEIVN 99 >UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT Length = 98 Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+E + + SH+ K V+ + L + +L +GE++ + GFG+F + RT Sbjct: 1 MNKTELVESV-SDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+TG+ +E+ + VP F GK LR+ ++ Sbjct: 60 GRNPRTGEALEIPARTVPKFSAGKSLREAIDL 91 >UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root RepID=DBH2_BACSU Length = 92 Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI ++A +Q + K +V+++ + ++ L GE++ I GFG+F + RA R Sbjct: 1 MNKTELIAKVAEKQG-VSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG+++++ P FKP K L+D Sbjct: 60 GRNPQTGEEIDIPATKAPAFKPAKALKD 87 >UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms RepID=DBHA_AERHY Length = 90 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 59/88 (67%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L++ +A + + + + A++E++ + +L +G+ +++ GFG+F +++RA RT Sbjct: 1 MNKAQLVDAIAAK-ADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG ++++ VP F GK L+D Sbjct: 60 GRNPQTGKEIQIAAANVPSFVAGKALKD 87 >UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae RepID=Q8SME4_CYAME Length = 112 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 58/91 (63%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A ++ + K V + + E+L +A L G+++++ GFG+FS YRA R Sbjct: 1 MDKTELISAVA-EKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARD 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+++ + ++V F PG +L+ + Sbjct: 60 GRNPRTGERLIIPERHVVVFSPGSDLKQQVQ 90 >UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria RepID=B1Y0T8_LEPCP Length = 116 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 60/91 (65%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + KSELIE +A +++ I A++ ++ + STL +G+ + + GFG+F++ RA R+ Sbjct: 27 VNKSELIEHIA-EKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARS 85 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG ++++ VP F+PGK L+D N Sbjct: 86 GRNPRTGAVIKIKSSKVPKFRPGKALKDSLN 116 >UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2T0_SALRD Length = 100 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 57/88 (64%), Gaps = 5/88 (5%) Query: 1 MTKSELIERLA--TQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 MTK++LI+++A T + I + V V+ + + + +G RIE+R FG F + +RAP Sbjct: 3 MTKADLIDQIADGTGLTKIETRAV---VEGFMTAVRGAMKEGRRIELREFGVFEVQHRAP 59 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKEL 86 RTGRNP+T + VE+E +Y P F+P +L Sbjct: 60 RTGRNPQTNEPVEIEDRYKPVFRPSDKL 87 >UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms RepID=DBH_GUITH Length = 93 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 1 MTKSELIERLATQQSHIPAKT-VEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPR 59 M KS+LI ++A + +KT +E + MLE + T+A GE++ + GFGSF R R Sbjct: 1 MNKSQLISKIAYYTKY--SKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAR 58 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+K+ L +P F G R++ N Sbjct: 59 EGRNPRTGEKLFLPASRIPTFSVGNFFRNKVN 90 >UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia RepID=Q2J6X1_FRASC Length = 94 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+L++R+A QQ AV + + + +A GE++ I GFG F RA RT Sbjct: 1 MNKSQLVDRIA-QQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 GRNP TG+ V + VP F+PG E + Sbjct: 60 GRNPATGEPVHVAASVVPKFRPGSEFK 86 >UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMW2_9FIRM Length = 91 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ +A +++ + K E AV + E + L +G+++++ GFG+F + R+ R Sbjct: 1 MNKNELVASVA-EKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARA 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+T + +++ P FK GK L+D N Sbjct: 60 GRNPRTNETIQIPASKNPAFKAGKALKDAVN 90 >UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA Length = 97 Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++++E + Q +PAK V+++LE + S+L G+ + I GFG F + ++ R Sbjct: 3 LTKAQIVEEIHNQLG-LPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRR 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TGD + L+ + V F LRDR N Sbjct: 62 GRNPATGDSIILDARKVVTFTCSGVLRDRIN 92 >UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A906_GEMAT Length = 110 Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 5/92 (5%) Query: 1 MTKSELIERLATQQSH-----IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHY 55 MTK++L+E + + + I K V L+ + L + + IE+RGFG+F + Sbjct: 1 MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60 Query: 56 RAPRTGRNPKTGDKVELEGKYVPHFKPGKELR 87 R R RNP+TG VE+ + VP FKP KELR Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELR 92 >UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHM4_DESMR Length = 92 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+ + ++ ++ + + V E + L G+R+E+RGFGSF++ T Sbjct: 1 MNKGELIKAVG-EKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG KVE++ K +P FK G++ ++ N Sbjct: 60 GRNPKTGIKVEVKPKKIPFFKTGRDFKNYLN 90 >UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK7_DESVV Length = 91 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+EL+E++ + E A+ + +A +A GE + GFGSF + RA R Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG+++ + V F PGK L+D Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKD 88 >UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=Q0AI99_NITEC Length = 90 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELIE +A + + I +A+ L + L++ + + + GFG+F + RA RT Sbjct: 1 MNKSELIEAIA-RHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +++++ VP F GK L+D N Sbjct: 60 GRNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90 >UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 Tax=Methylobacterium sp. 4-46 RepID=B0UCA4_METS4 Length = 102 Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 53/91 (58%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +++LI+R+A H+P + V+ +L+ + L +G+RIE+RGFG R R Sbjct: 1 MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+ VE+ K F+ +E+ +R N Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERLN 91 >UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH Length = 91 Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI L Q++ + + V+ + + LA ER+EIRG SF + T Sbjct: 1 MNKLELISVLK-QRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG KV + K +P FK GKEL++R + Sbjct: 60 GRNPKTGAKVTIPAKKLPFFKCGKELKERVDF 91 >UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi RepID=A5CCR4_ORITB Length = 125 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 49/91 (53%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K+E + + +++ +E A+ +L + + G I I GFGSF + +RA R Sbjct: 34 LNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAARD 93 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NPKTG K+ + Y FKPGK L+D N Sbjct: 94 GHNPKTGAKIIIPESYQVVFKPGKTLKDACN 124 >UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EUM1_9BACT Length = 102 Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 47/88 (53%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TKSELI+ L + + K V + V ++ + +A+G + I GFG F RA RT Sbjct: 9 LTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAART 68 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP TG +++ P F GK +D Sbjct: 69 GRNPATGAVIKIAATTTPRFAAGKAFKD 96 >UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=Planctomycetaceae RepID=C1ZKD3_PLALI Length = 171 Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E+++ ++ + KT ++ V++ + + TL RIE+R FG F + RA R Sbjct: 1 MTKKEIVKAISDEIGLTQLKT-KEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 RNP+TGDKV + K+V FKPGKE+ ++ Sbjct: 60 ARNPRTGDKVFVPEKFVVTFKPGKEMEEK 88 >UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS Length = 116 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK E+++ +A+Q KT + V+E+++ +++ + +G IE+RGFG F R R Sbjct: 8 ITKKEIVDEIASQTGFTQVKT-KVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERR 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+ V + K P F+P K+L ++ N Sbjct: 67 TRNPKTGELVNIPAKVRPVFEPSKDLIEKIN 97 >UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS Length = 92 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+ +A Q A+T E + +LE + +++G+ +++ GFGSF RA RT Sbjct: 1 MNKQELIDAVAAQTGASKAQTGE-TLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ +++ F GK +D N Sbjct: 60 GRNPKTGETIKIPAAKTVKFTAGKAFKDAVN 90 >UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJS4_TERTT Length = 93 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L+++L T + +D V+ ++E + + LA+GER+++ G GSFS+ +R T Sbjct: 1 MRKTDLVKQLCTL-GELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 G NP+TG+ + + K FK GK LRD Sbjct: 60 GINPQTGEALRIAAKNQIFFKAGKRLRD 87 >UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum ferrodiazotrophum RepID=C6HU01_9BACT Length = 99 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 48/88 (54%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKS+L RLA + I + L+ M LA G+ +EIR FG +H +APR Sbjct: 1 MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNPKTG V + + FK G+ L++ Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKN 88 >UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5 Length = 90 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ +A + +P A+ ++E + L G+ + + GFG+FS+ R R Sbjct: 1 MNKSELIDAIAAS-ADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +E+ P FK GK L++ N Sbjct: 60 GRNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90 >UniRef50_Q1V1Q3 Integration host factor beta-subunit (IHF-beta) n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1V1Q3_PELUB Length = 96 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 52/91 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + KS+L+++LA + K +E +L + L +G+R+E+RGFG FS + + R Sbjct: 3 IVKSKLLKQLANNYPNFLKKDLEKFTDIILTEIKQALKRGDRVELRGFGMFSTNIQKARI 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+KV K HFK KE+ + N Sbjct: 63 SRNPKTGEKVNTPEKKTIHFKMSKEMFKKLN 93 >UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 Tax=Cystobacterineae RepID=A7H8A7_ANADF Length = 126 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+LI L ++ + K E ++ + + M L +GE IEIRG G+F + + Sbjct: 1 MLKSDLINILVVKRG-VTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ + ++ K F+ GKELRDR N Sbjct: 60 GRNPKTGEVIPVKPKRGILFRTGKELRDRVN 90 >UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8 Length = 96 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++L++++A Q + + K V+ V +L + LA G ++++ GFG+F + R RT Sbjct: 6 VTKADLVDQVA-QATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKART 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 G P T +K+++ P FKPGK L+D+ Sbjct: 65 GVKPGTKEKIKIPATQYPAFKPGKALKDK 93 >UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A1AW42_RUTMC Length = 91 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 5/93 (5%) Query: 1 MTKSELIER--LATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M KSELI+ LA S + A A+ + + +A + +++ GFGSF + RA Sbjct: 1 MNKSELIDAIALAANLSKVDA---SRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAA 57 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RTGRNP+TG ++++ V FK GK L++ N Sbjct: 58 RTGRNPQTGATIQIKASKVAAFKAGKALKEAVN 90 >UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMR7_AKKM8 Length = 101 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 58/91 (63%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +L+ +++ + ++ V D V+ ++ ++STLA+G+R+ IR FG+F + P+ Sbjct: 5 LTKRDLVNKISAE-TNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVKPKV 63 Query: 61 GRNPKTGDK-VELEGKYVPHFKPGKELRDRA 90 GRNPK D+ V + + V FK GKEL+D+ Sbjct: 64 GRNPKNPDQDVPIPARSVVKFKVGKELKDQV 94 >UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani RepID=Q3J6Y8_NITOC Length = 94 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ ++++ T + AV + + + L++ R+ + GFGSFS+ RA R+ Sbjct: 1 MNKTELVN-FVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARS 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GR+P++G+ + ++ K P FKP K L++ Sbjct: 60 GRHPQSGEVIIIQAKSAPTFKPSKALKE 87 >UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=1 Tax=Persephonella marina EX-H1 RepID=C0QP77_PERMH Length = 95 Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 51/89 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+L+ L + ++ K + + E M L++G+++EIRG GSF + + R Sbjct: 1 MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 RNPKTG VE+ K V HFK GK L+ + Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKK 89 >UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales RepID=A6TJN4_ALKMQ Length = 92 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 2/93 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L+ ++A ++S + K E A+ +E + L G+++++ GFG+F + R PR Sbjct: 1 MNKADLVAKMA-EKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQ 59 Query: 61 GRNPKTGDKV-ELEGKYVPHFKPGKELRDRANI 92 GRNP+ ++V E+ P FK GK L+++ N+ Sbjct: 60 GRNPRNPEQVIEIPASKAPVFKAGKTLKEKINV 92 >UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2Z0_9PLAN Length = 159 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK E+++ ++ + KT E V++ + TL + RIE+R FG F + RA R Sbjct: 20 VTKKEIVKTISEEIGLTQLKTKE-IVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARK 78 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+KV + K+V FKPGKE+ +R Sbjct: 79 ARNPRTGEKVYVPSKFVVTFKPGKEMEERV 108 >UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO Length = 91 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 K +LI ++A + + + K AV + + L++GE++++ GFG+F + RA R G Sbjct: 3 NKQDLIAKVA-EATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRD 88 RNP+TG ++++ VP FK GK L+D Sbjct: 62 RNPQTGAEIKIAASKVPAFKAGKALKD 88 >UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms RepID=DBH_XYLFT Length = 94 Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%) Query: 1 MTKSELIERLATQQ--SHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M K+ELI+ +A S + A DAV + + L +G+ + + GFG+F + RA Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAV---VNEITEALKEGDSVTLVGFGTFQVRQRAE 57 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRD 88 R GRNPKTG+ + + P FKPGK L+D Sbjct: 58 RPGRNPKTGEPIMIAASNNPSFKPGKALKD 87 >UniRef50_C6XFR8 Integration host factor, beta subunit n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFR8_LIBAP Length = 100 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/91 (43%), Positives = 52/91 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R Sbjct: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 R P + +E K VP F+ GK L++R N Sbjct: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91 >UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria RepID=Q5ZUE2_LEGPH Length = 100 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 7/91 (7%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMAST---LAQGERIEIRGFGSFSLHYRA 57 M KSEL++ +A+ A DA + + MA+ L +G+++ I GFGSFS R+ Sbjct: 9 MNKSELVDAIASGSGLTKA----DASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRS 64 Query: 58 PRTGRNPKTGDKVELEGKYVPHFKPGKELRD 88 RTGRNP+TG ++++ V FK GK L++ Sbjct: 65 ARTGRNPQTGKTIQIKASRVAKFKAGKNLKE 95 >UniRef50_B6BR84 Integration host factor beta-subunit n=3 Tax=root RepID=B6BR84_9RICK Length = 97 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 53/91 (58%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + KS+L+++L+ + K +E +L + + L +G+R+E+RGFG FS + + R Sbjct: 3 IVKSKLLKQLSDNYPNFLKKDLEKFTNIILGEIKNALKRGDRVELRGFGVFSTNIQKARI 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+KV K HFK K+L + N Sbjct: 63 SRNPKTGEKVNTPQKKTIHFKMSKDLFKKLN 93 >UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales RepID=A4X4D0_SALTO Length = 237 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K+ELIE LA + KT A+ +L + + + +GE++ I GFG+F R RT Sbjct: 18 VNKAELIETLAVRLGD--RKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGART 75 Query: 61 GRNPKTGDKVELEGKYVPHFKPG 83 RNP+TG+ V+++ VP F+PG Sbjct: 76 ARNPRTGEAVKVKKTSVPTFRPG 98 >UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VZ6_DESDG Length = 95 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 1 MTKSEL----IERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYR 56 MTK+EL +E LA K V D + L+ + LA G+ + + GFG+F + R Sbjct: 1 MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60 Query: 57 APRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 R GRNPKTG+ VE+ F PGK L++ N Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN 95 >UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria RepID=Q7WX14_RALEH Length = 114 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 52/91 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+ELIE +A + E+A+ L + +A+G+ + + GFG+FS RA R Sbjct: 22 MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+++++E FK G+ R+ N Sbjct: 82 ARNPRTGEEIKVEAARTVKFKAGQRFREAVN 112 >UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q2LW81_SYNAS Length = 91 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 2/88 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +L+E A + K ++ V +L+ M L +GE + + GFG+F + R+ RT Sbjct: 1 MNKGDLVE--AVTKVVGKKKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSART 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG ++++ K VP F GK+L++ Sbjct: 59 GRNPQTGKPIKIKAKKVPKFTAGKKLKE 86 >UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS Length = 124 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK LI+ +A + ++ V++ L+ + L +G IEIRGFG+F+ R R Sbjct: 4 ITKQSLIQEIAKSTGFV-RNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARP 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+ V ++ + VP FK +++D+ N Sbjct: 63 ARNPRTGETVLIDERLVPTFKFSNDIKDKIN 93 >UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria RepID=DBH5_RHILE Length = 91 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ +A +++ + AV + + + + L I + GFGSF++ +RA Sbjct: 1 MNKNELVSAVA-EKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG +V++ + VP F PGK L+D N Sbjct: 60 GRNPSTGAEVDIPARNVPKFTPGKGLKDAVN 90 >UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular organisms RepID=B1Y4B9_LEPCP Length = 131 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE LA Q + A+ + +L+ + +T+ +G + + GFGSF H RA R Sbjct: 1 MNKAELIEVLAKQHTLSKAEAAR-ILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARN 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 G NP TGDK+++ +P F PG + Sbjct: 60 GVNPGTGDKIKIAAVKLPKFTPGTAFK 86 >UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W7Q9_KINRD Length = 179 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 2/88 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+E+++ L + K AV+ ++E + T+A+G+++ I GFG+F R RT Sbjct: 1 MNKAEMVDALEARLGG--RKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNART 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG+ V+++ VP F+PG ++ Sbjct: 59 GRNPRTGEAVKIKKTSVPRFRPGTAFKE 86 >UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=A0LVA1_ACIC1 Length = 163 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A + KT +AV+ +++ + T+A+GE++ I GFG F RA R Sbjct: 1 MNKAELITAVAARIGD--KKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARM 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 RNP TG++V ++ VP F+ G L+ Sbjct: 59 ARNPATGERVRVKKTSVPKFRAGTRLK 85 >UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria RepID=Q2W5P8_MAGSA Length = 117 Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +L+ ++A + S + ++ + + S L G+ + + GFGSFS+ RA + Sbjct: 27 MNKQDLVNKVA-ELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKE 85 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +++ P F GK L+D N Sbjct: 86 GRNPRTGATIKIAASKAPKFTAGKGLKDAVN 116 >UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE Length = 92 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K E +E LA + + + A+ +L+ + +A GE++ GFGSF + RA RT Sbjct: 1 MNKGEFVEALA-DRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +++ VP F G L+ N Sbjct: 60 GRNPQTGASIKIAASRVPKFSAGATLKTAIN 90 >UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation n=34 Tax=root RepID=B3R809_CUPTR Length = 92 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 51/91 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+ELI+ +A + E A+ L + +A+G+ + + GFG+FS R R Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+++++E FK G++ +D N Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91 >UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria RepID=IHFA_NITOC Length = 99 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+++ E L Q+ + + ++ V+ E + L QGE +++ GFG+F L + R Sbjct: 3 LTKADMTETL-YQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPKTG+++ + + V F+PG++L+ R Y Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARVEAY 94 >UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 Tax=Desulfuromonadales RepID=B3EBV2_GEOLS Length = 93 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++LI+ +A QQ HI K V+E++ + +TL GE ++I FG F + + R Sbjct: 3 LTKNKLIQLVAEQQ-HITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARR 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ + +E + V FKP LR N Sbjct: 62 GRNPQTGEAITIEPRKVISFKPSVLLRQAIN 92 >UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT Length = 93 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 49/88 (55%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +LI +A + K ++ AV MLE + L + R+EIRGFGSFS+ R RT Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 +NP+TG + + + HF K L+D Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKD 88 >UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB6_THET1 Length = 84 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 51/72 (70%), Gaps = 1/72 (1%) Query: 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGR 62 K+ELI ++A +++ + V+ +EML + S+L +GE + IRGFG+F + R+PR GR Sbjct: 4 KTELINQVA-ERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGR 62 Query: 63 NPKTGDKVELEG 74 NP+TG+++E+ G Sbjct: 63 NPRTGEEIEIPG 74 >UniRef50_D0RRC9 Integration host factor subunit beta (IHF-beta) n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRC9_9RICK Length = 103 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 51/91 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 KS++++ L IP VE ++ + +++++ L++G IEIRG G+F + R Sbjct: 6 FVKSDIVKDLQGHFQKIPNNNVEHIIESIFKYLSNALSEGRNIEIRGLGTFKVKKMPARN 65 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+ +++E K +K K L R N Sbjct: 66 ARNPKTGETIQIEEKNKVKWKSSKLLNYRIN 96 >UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2 Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS Length = 103 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ E+ E L Q + + V L M L +GE I++ FG+F++ +APRT Sbjct: 13 LTRKEIAEELTGQLGY-SQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRT 71 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ + + + F+P K+LR++ N Sbjct: 72 GRNPRTGEPITITKRQAVSFRPSKKLREQVN 102 >UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Tax=Bacteria RepID=Q6KHG3_MYCMO Length = 108 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +LI +A Q+ K VE+ V LE ++S L ++I + FG F + RA R+ Sbjct: 18 ITKKDLIATIAENQNK-SKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARS 76 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NPKT + ++++ FK K L+D+ N Sbjct: 77 GINPKTSEIIQIKATKSVKFKVSKSLKDQVN 107 >UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BW86_GRABC Length = 101 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++LI+++A A TV+ V +E +++TL GE + I G G F + RA R Sbjct: 1 MNHADLIDKIAKSTDQTKA-TVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +E+ F+ GK L+D N Sbjct: 60 GRNPQTGATIEIAATRAARFRAGKALKDAVN 90 >UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UA57_9DELT Length = 92 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKT-VEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPR 59 M KSEL++ + +++ +K VE AV + L+ +A LA+ +++ I GFGSF APR Sbjct: 1 MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP G+ V++ FKPGK L++ Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKE 89 >UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F3B Length = 114 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +L+E +A + S K E AV +L+ + L QG+ +++ GFG F + R R Sbjct: 23 MNKEQLVEVVA-KSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARM 81 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRN KTG++VEL VP F G L+ N Sbjct: 82 GRNRKTGEEVELPAGKVPVFTAGITLKKALN 112 >UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q201_9BACT Length = 103 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 5/91 (5%) Query: 2 TKSELIERLA--TQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPR 59 TK +L E++A T +H+ V+ ++ L+ + L+QG RIE+R FG F + RA R Sbjct: 5 TKRDLCEKIARKTDNTHM---VVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAAR 61 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ + K V FK GK +R++ Sbjct: 62 KARNPRTGEVAFVPSKNVVVFKVGKLMREKV 92 >UniRef50_B8II37 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8II37_METNO Length = 113 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +++LI+R+A H+ E V+ +L+ M L Q ERI +RGFG+F + R R Sbjct: 1 MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NP+TG+ V + + F+ E+ R N Sbjct: 60 GHNPRTGEAVAVPARRDVRFRASTEMLHRLN 90 >UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM Length = 91 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%) Query: 25 AVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGK 84 AV LE ++ +L Q + + GFG+FS+ RA R GRNP+TG+K+ + FK G+ Sbjct: 24 AVAATLEAISESLGQSATVSLLGFGTFSVGERAAREGRNPQTGEKINISASRTIRFKAGQ 83 Query: 85 ELRDRAN 91 LR++ N Sbjct: 84 SLREKVN 90 >UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=Alphaproteobacteria RepID=IHFA_SILPO Length = 100 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 45/65 (69%) Query: 26 VKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKE 85 V+ ML HM+ L +GE+++I FG+FS+ ++ R GRNPKTG++V ++ + V F+P Sbjct: 30 VESMLNHMSDALVRGEQVKISSFGTFSVRDKSARVGRNPKTGEEVPIQPRRVLTFRPSHL 89 Query: 86 LRDRA 90 +++R Sbjct: 90 MKERV 94 >UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWH5_9PLAN Length = 180 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK E+++ ++ + KT ++ V++ + + TL + RIE+R FG F + RA R Sbjct: 57 VTKKEIVKTISEEIGLTQLKT-KEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARK 115 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG V + K+V FKPGKE+ ++ Sbjct: 116 ARNPRTGQPVYVAEKFVVTFKPGKEMEEKV 145 >UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria RepID=Q01W44_SOLUE Length = 108 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K ++I + ++ I E AV+ + E M L QG+RIE+RGFG F++ R Sbjct: 20 LIKLDIINEVV-NRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGI 78 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 GRNP+TG +V + FKPGKEL+ Sbjct: 79 GRNPRTGAEVSIPPGKAVRFKPGKELQ 105 >UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria RepID=DBH_SYNY3 Length = 100 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Query: 1 MTKSELIERLATQQSH-----IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHY 55 M K EL+ + + I K V+ + ++ + +A+GE++ + GFGSF Sbjct: 1 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60 Query: 56 RAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDR 89 R R GRNPKTGDK+ + VP F GK +D+ Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDK 94 >UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS Length = 94 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++LI+++ + + ++V+ L L G + + GFG F++ ++ R Sbjct: 3 LTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSRR 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TGD++ LE + V FKP LRD+ N Sbjct: 63 GRNPQTGDELTLEARRVVTFKPSGILRDKIN 93 >UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 Tax=Anaeromyxobacter RepID=B4UEN5_ANASK Length = 90 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++LIE++ + + V V + EH+A + + +R + GFG+F + RA R Sbjct: 1 MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 GRNP+TG ++++ FKP EL+ Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELK 87 >UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular organisms RepID=IHFA_TOLAT Length = 106 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+++ E L T+ I + ++ V+ E + L GE+++I GFG+F L + R Sbjct: 3 LTKADIAEHLFTELG-ISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG+ + + + V F+PG++L+ R Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria RepID=Q0AZ79_SYNWW Length = 110 Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ LA +++ I K + ++E + LA G++++I GFGSF + R R Sbjct: 1 MNKSELVKSLA-EKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 +P TG ++ + VP FKPGK L Sbjct: 60 VISPATGKEITVPATKVPAFKPGKSL 85 >UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QR54_PERMH Length = 96 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%) Query: 1 MTKSELIER-LATQQSHIPAKTVEDAVKEMLEHMASTLAQGE---RIEIRGFGSFSLHYR 56 MTK+E++E L + + K V D V + E + L GE +++I GFG+F + R Sbjct: 1 MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60 Query: 57 APRTGRNPKTGDKVELEGKYVPHFKPGKELRD 88 AP+ GRNPKT ++ + ++ FK GK L++ Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKE 92 >UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group RepID=DBH_RICCN Length = 99 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 8/99 (8%) Query: 1 MTKSELIERLATQ---QSHIPAKTV-----EDAVKEMLEHMASTLAQGERIEIRGFGSFS 52 M K+E I + H KT+ E A+ +L+ + S + I I GFGSF Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60 Query: 53 LHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 +H+R R GRNPKTG K++++ P F+ G+++++ N Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 99 >UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6F1_HAMD5 Length = 114 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 5/90 (5%) Query: 1 MTKSELIERLATQQ--SHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M K++LI+ +A + I A TV + + L+ + +L + E +++ GFG+F++ +R Sbjct: 1 MNKAQLIDEIAENAGITKIKANTVLNII---LDRITESLKKHESVQLVGFGTFNVKHRDA 57 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRD 88 R RNP+TG+ +EL YVP K L+D Sbjct: 58 RNARNPQTGEPIELPACYVPSLNFAKALKD 87 >UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria RepID=Q39VS3_GEOMG Length = 91 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++++E++ ++ K + V+ + + TL GE+I+I GFG+F + +A R Sbjct: 1 MTKADIVEQI-YEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRR 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TGD++ + + + FKP + L+ N Sbjct: 60 GRNPQTGDEIIISARRILTFKPSQVLKSSIN 90 >UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AA8F Length = 97 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK ELI +A +++ I VE A+ + T+A G+ I IRGFG+ S R + Sbjct: 1 MTKQELINTIA-ERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RN G V + VPHFKP K + + N Sbjct: 60 ARNITAGTSVVVPETIVPHFKPCKAFKGQVN 90 >UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria RepID=B1XSK3_POLNS Length = 106 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K+ELI +A + I E A+ +E++ + +G+ +++ GFG+F+ RA R Sbjct: 13 LNKAELIAAIA-DDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARM 71 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ +++ F GK +D N Sbjct: 72 GRNPKTGEPLKIAAAKTVKFSAGKAFKDSVN 102 >UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUL7_9CAUD Length = 92 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++E + +A+ Q +I E V ++ + + +A G +++ GFG+F + ++ R Sbjct: 1 MNRTEFVAHIASTQ-NITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP G +++E K V FK G+ L++ AN Sbjct: 60 GRNPLNGQTIQIEAKNVVKFKVGEGLKNAAN 90 >UniRef50_UPI0000382BC5 COG0776: Bacterial nucleoid DNA-binding protein n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382BC5 Length = 74 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 40 GERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 G+R+E+RGFG+FS+ R R GRNP+TG+ V + K +P FK GKE+R R N G Sbjct: 12 GDRVELRGFGAFSVKRREARRGRNPRTGESVSVSEKAIPVFKTGKEMRLRLNRAG 66 >UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI Length = 105 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 52/92 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + + +L++++A++ + KT A+ LE +A LAQG +++ GFGSF + R RT Sbjct: 7 LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 +P+TG V + + F P + LR+R + Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERLRV 98 >UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii RepID=B6KEZ7_TOXGO Length = 235 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L+ +A + +P VE V L H++++L QG+++ + FGS L R R Sbjct: 121 VTRKDLVASVAAEL-QVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERV 179 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 RNP+TG+++ + P F K L+D+ Sbjct: 180 ARNPRTGEQLTVPATTFPTFSFSKVLKDK 208 >UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria RepID=Q2W3I2_MAGSA Length = 136 Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K++L+ +A A + AV + E + S L G+ + + GFG+F++ RA Sbjct: 47 VNKNDLVTAVAGAAGLSKADAAK-AVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASE 105 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG+K+ + P FK GK L+D Sbjct: 106 GRNPRTGEKISIPASKQPKFKAGKGLKD 133 >UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A9C1_THECD Length = 159 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++ELIE +A PA V + E + + GER+ + GFG+F R RT Sbjct: 1 MNRTELIEAVAALAGSDPA-VARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 RNP+TG+ VE+ P F+ G+ +DR Sbjct: 60 ARNPRTGEPVEVPPTETPRFRAGQTFKDR 88 >UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2 Length = 96 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL+ +A ++S + E A+ ++ + TLA+GE++++ GFG+F R R Sbjct: 1 MNKSELLSSIA-KKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKARE 59 Query: 61 GRNPKT-GDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+ +K+++ P FK GK L++ N Sbjct: 60 GRNPRNPEEKIQIPASNAPVFKAGKSLKEAVN 91 >UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A4JQB1_BURVG Length = 92 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+ +A + + V+ +L+ + +++ E +++ GFG+FS R+ RT Sbjct: 1 MNKQELIDAVAAG-AGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG+++ + F GK +D N Sbjct: 60 GRNPTTGEEIAIAAANTVKFAAGKAFKDAVN 90 >UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP Length = 92 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI + +++S++ +++ ++ L + +L G +++ GFG+F ++ RA R Sbjct: 1 MNKSELIN-IISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 GRNP+TG + + P F GK + Sbjct: 60 GRNPQTGQTIHISATKTPVFISGKTFK 86 >UniRef50_O67923 Integration host factor beta subunit n=2 Tax=Aquificaceae RepID=O67923_AQUAE Length = 100 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKS++ + LA + I K V E + + + GE++E+RG G+F L + R Sbjct: 1 MTKSDIAKELARRHG-ISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRF 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 +NPKTG ++ ++ +YVP++K K LR + N Sbjct: 60 VKNPKTGIEIYVKERYVPYYKMSKLLRKKLN 90 >UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales RepID=A6L5T8_BACV8 Length = 94 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+EL ++++ + + A+T+ V+ ++ + +L +GE + +RGFGSF + RA +T Sbjct: 1 MTKAELCKKISAK-TGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RN + + +P FKP KEL N Sbjct: 60 TRNISKNTTIIIPAHNIPAFKPSKELVKLVN 90 >UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BF96_9PORP Length = 99 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+E++ R+A +Q+ + V + V+ +E + + +G + +RGFGSF + +RA + Sbjct: 1 MTKAEIVARIA-KQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RN + + +P FKP K D N Sbjct: 60 ARNISQNTTIVIPAHSIPAFKPSKAFADMVN 90 >UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA Length = 91 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ +A ++ + + + V + + L G + + GFG+F A R Sbjct: 1 MNKSELIQAIA-DEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ + + + P F+ GK L+D N Sbjct: 60 GRNPKTGEPLTIAARKTPKFRSGKALKDAVN 90 >UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ83_PELPD Length = 126 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 5/90 (5%) Query: 1 MTKSELIERLA--TQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M K+EL+ ++A + + + A+ V D + + L G+++ I GFG+FS R Sbjct: 1 MNKTELVAKIAEGAELTKVQAEKVLDI---FIASTTAALKAGDKVAIIGFGAFSAVTRKA 57 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRD 88 RTGRNP+TG +++ K F PGK L+D Sbjct: 58 RTGRNPQTGKALQIAEKTNGKFTPGKALKD 87 >UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBB5_TOLAT Length = 91 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 1 MTKSELIERLATQQSHIPAKTVED-AVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPR 59 M K+ELI +AT+ + AK + D A+ + + + L GE + I G G+FS+ +A R Sbjct: 1 MKKAELINAVATEMN--TAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAAR 58 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ VE+ K FK K L D N Sbjct: 59 LGRNPQTGETVEIAAKKTVKFKAAKALADAVN 90 >UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms RepID=DBH1_RHILE Length = 91 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ +A +++ + AV + E + S L G I + GFGSFS+ R Sbjct: 1 MNKNELVSAVA-EKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG +V++ + VP F GK L+D N Sbjct: 60 GRNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90 >UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=Gammaproteobacteria RepID=IHFA_SHEDO Length = 99 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+E+ E L + + + ++ V+ E + L GE++++ GFG+F L + R Sbjct: 3 LTKAEMAEHL-FETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 GRNPKTG+ + + + V F+PG++L+ R Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKAR 90 >UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=DBH_STRGN Length = 91 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 37/52 (71%) Query: 37 LAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRD 88 L++GE++++ GFG+F + RA R GRNP+TG + ++ VP FK GK L+D Sbjct: 37 LSKGEKVQLIGFGNFEVRERAARKGRNPQTGKETKIAASKVPAFKAGKALKD 88 >UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYJ3_9DELT Length = 97 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 46/72 (63%) Query: 20 KTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPH 79 ++ D V + + + +TL E I++ FG+F++ ++PR GRNP+TGD +E+ + + Sbjct: 24 RSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQGRNPRTGDPMEISKRSMIS 83 Query: 80 FKPGKELRDRAN 91 F+P K +R+R N Sbjct: 84 FRPSKSVRERIN 95 >UniRef50_C8PNN7 DNA-binding protein, HU family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNN7_9SPIO Length = 112 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 TK+ +++ + + H+ K + M L +GE IEIRGFG+FS+ +R R G Sbjct: 11 TKTSIVDAIYKKSDHM-LKDIHSVSDLFFAEMFQALERGETIEIRGFGTFSVQFRKGRKG 69 Query: 62 -RNPKTGDKVELEGKYVPHFKPGKEL 86 RNPKTG+ V+ V F+PGK L Sbjct: 70 MRNPKTGELVDTADHSVVVFRPGKIL 95 >UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI67_DESAH Length = 108 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+E+ ER + I T D +++ LE + TL QGE + I GFG F ++ + R Sbjct: 3 LTKTEITERFQ-KALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARK 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP T +++ L + V FK +LR+ N Sbjct: 62 GRNPATSEEMILPARRVITFKCSGKLRNLIN 92 >UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteobacteria RepID=Q1GXQ0_METFK Length = 90 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMAST----LAQGERIEIRGFGSFSLHYR 56 M KSEL+ + PA T + +L+ + S LA+G + + G G S+ R Sbjct: 1 MKKSELVALIK------PANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTER 54 Query: 57 APRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 A R GRNP+TG+ + +E K P F K L+D N Sbjct: 55 AARAGRNPRTGEIIPIEAKKTPKFSAAKALKDAVN 89 >UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=Deltaproteobacteria RepID=IHFA_MYXXD Length = 129 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+++IE + ++ K + V+ + + + TL +G++I+I GFG+F + + R Sbjct: 1 MTKADIIEGV-YEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG ++E+ + V F+P + L+ N Sbjct: 60 GRNPQTGKEIEISARRVLTFRPSQVLKSALN 90 >UniRef50_B5JEX1 DNA-binding protein HU n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JEX1_9BACT Length = 104 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +++ R+ + IP ++D V+ L+ + LA+G +E+R FG F + R R Sbjct: 5 LTKRDIVLRIFEKTKDIPQSKIQDTVQMTLDIILDALAEGRNVELRNFGVFEVQKRKARV 64 Query: 61 GRNPKTGD-KVELEGKYVPHFKPGKELR 87 GRNP + V + + V FK GK L+ Sbjct: 65 GRNPNRPETDVVIPTRAVVKFKAGKVLK 92 >UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=Alphaproteobacteria RepID=IHFA_DINSH Length = 101 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 43/65 (66%) Query: 26 VKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKE 85 V+ +L HM+ L +GE ++I FG+FS+ ++ R GRNPKTG++V + + V F+P Sbjct: 30 VESILTHMSDALVRGESVKISSFGTFSVRDKSARIGRNPKTGEEVPIHPRRVLTFRPSHL 89 Query: 86 LRDRA 90 +++R Sbjct: 90 MKERV 94 >UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B856_9PORP Length = 101 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K L+E + + + ++P V + + + +A +L + ER+ I+ FGSF L ++A R Sbjct: 1 MNKHSLVE-IISDRLNMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+ + + + F PGK L D N Sbjct: 60 VRNPKTGEPMIFQPRNSVKFVPGKHLVDLLN 90 >UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE Length = 90 Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL +A +++ + + + +L+ + L + + + + GFG+F +R RT Sbjct: 1 MRKPELAAAIA-EKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G+NP+TG V+++ FKPGK LRD N Sbjct: 60 GKNPQTGQPVKIKASNTVAFKPGKALRDAVN 90 >UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WDC5_BORBR Length = 93 Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +LI L+ ++ + E+ V + ++ L GE + G G FS RA RT Sbjct: 3 LTKKDLIATLS-YETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAART 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ VE+ F K L+D+ N Sbjct: 62 GRNPQTGEPVEIAASVAVKFSASKTLKDQVN 92 >UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4H0_HAMD5 Length = 119 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE++ + A++ E AV + + L + E ++I FG+F + +R R Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTE-AVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 RNPKTG+K++ + V F GK L+D ++ Sbjct: 60 SRNPKTGEKIKTPAREVAVFSAGKSLKDSVHLQA 93 >UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae RepID=DBH_CAMJR Length = 98 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++ I L Q + + K A ++ + LA+G+ I GFG+FS RA R Sbjct: 1 MTKADFIS-LVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 R P TG +++ V FK GK L++ Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNLKE 87 >UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium RepID=C3WGU4_9FUSO Length = 92 Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 45/91 (49%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E + L + E V + E M TL GE I I +G + RAPR Sbjct: 1 MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRL 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG++V + + F+PGK ++ N Sbjct: 61 GRNPKTGEEVNIGERKSVKFRPGKAFLEKLN 91 >UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AIP7_9PORP Length = 91 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +S+LI LA Q++ + K V+ + EM + + + +G+RI + GFGSF +++ R Sbjct: 1 MNRSQLINILA-QKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RN K G V+L + + HFK L ++ N Sbjct: 60 ARNLKNGTAVQLSPRTIIHFKCAPHLLEQMN 90 >UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX6_LEGLO Length = 92 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI + + S + E A+ ++ + LA+G+ I + GF S S+ RT Sbjct: 1 MNKKELIAAI-SNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG +E+ V FK G +L++ N Sbjct: 60 GRNPSTGQPIEIAASKVVSFKTGTKLKEAIN 90 >UniRef50_Q57267 DNA-binding protein HU n=41 Tax=Borrelia RepID=DBH_BORBU Length = 108 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 5/95 (5%) Query: 1 MTKSELIERLA----TQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYR 56 +TKS+++++++ + K + + E + S L IE R FG+F + R Sbjct: 9 VTKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 57 APR-TGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 R RNP+TG+ V++ +V +F+PGK+L++R Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103 >UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B7U9_9PORP Length = 99 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%) Query: 7 IERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKT 66 IE++ + +P TVE V+ LE ++ L G + I+ FGSF + R RNP+T Sbjct: 6 IEKITAARLGVPVTTVEPFVQAFLETVSDCLMYGHHVTIQRFGSFRRWEQTSRPVRNPRT 65 Query: 67 GDKVELEGKYVPHFKPGKELRDRAN 91 G+ LE + F PGK L ++ N Sbjct: 66 GEPCMLEPRTSVKFNPGKTLFEKMN 90 >UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=Gammaproteobacteria RepID=IHFA_PSYA2 Length = 99 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 5/93 (5%) Query: 1 MTKSELIERLATQQSHIPAKTVED--AVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 +TKS++IE L SH+ E V+ + ++ +L G+ +++ GFG+F L + Sbjct: 4 LTKSDMIEHLM---SHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNS 60 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 R GRNPKTG+ V + + V FK G++ R + + Sbjct: 61 RPGRNPKTGEPVAVSARRVVTFKTGQKFRQQVD 93 >UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae RepID=C6X423_FLAB3 Length = 96 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGE-RIEIRGFGSFSLHYRAPR 59 M KSELI+ +A + I + A++ + ++ +TL+Q + ++ + GFG+FS+ RA R Sbjct: 1 MNKSELIDAMA-NDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAAR 59 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKEL 86 G NP T +++ K V FK G +L Sbjct: 60 QGINPATKKPIKIAAKTVAKFKAGADL 86 >UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria RepID=Q121G1_POLSJ Length = 103 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++ELI+ +A + A T ++ +LE + + +G+ +++ GFG+F RA RT Sbjct: 1 MNRAELIDTIAAETDLSKAAT-GRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 G+NP+TG+ V++ VP F G + + Sbjct: 60 GKNPRTGEAVKIPATTVPKFVAGAKFK 86 >UniRef50_A3RUQ6 DNA-binding protein HU n=4 Tax=Betaproteobacteria RepID=A3RUQ6_RALSO Length = 91 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK ELI+ LA ++ + ED + + E + T+ G + I G F RA +T Sbjct: 1 MTKQELIKHLA-DKAEVTKGKAEDLLNALTETILDTVRAGNELTITDLGKFGSVERAAKT 59 Query: 61 GRNPKTGDKVELEGKYVPHF 80 GRNPKTGD + + K P F Sbjct: 60 GRNPKTGDVIAIAAKRAPKF 79 >UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX16_9DELT Length = 95 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMA-STLAQGERIEIRGFGSFSLHYRAPR 59 +TK++LI+ + Q H +K+ V E+ +A +L +GE + + GFG FS+ + R Sbjct: 3 LTKADLIQEVY--QRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSR 60 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+++ L + V FKP LR R N Sbjct: 61 RGRNPQTGEELMLAPRRVITFKPSGLLRQRVN 92 >UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis RepID=B2RHA9_PORG3 Length = 88 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++ I +A +++++ + AV E + + GE+I + GFG+FS+ RA R Sbjct: 1 MNKTDFIAAVA-EKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 G NPKT + + + V FKPG L Sbjct: 60 GINPKTKKSISIPARKVVRFKPGSTL 85 >UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BF20_STRRD Length = 106 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELIE+ A ++ + + A++ +L + + +A +++ I GFGSF + ++ RT Sbjct: 12 MNKRELIEK-AAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPART 70 Query: 61 GRNPKTGDKVELEGKYVPHFKP 82 GRNP+TG+ +E+ + FKP Sbjct: 71 GRNPQTGEPLEIAETWTAKFKP 92 >UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria RepID=IHFA_BORA1 Length = 116 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+EL E L ++ + + +D V E + LA+G+ +++ GFG+F + + PR Sbjct: 12 LTKAELAE-LLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRP 70 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 GRNPKTG+ + + + V F ++L+ Sbjct: 71 GRNPKTGETIPIAARRVVTFHASQKLK 97 >UniRef50_B2ILK2 Histone family protein DNA-binding protein n=10 Tax=Rhizobiales RepID=B2ILK2_BEII9 Length = 114 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 42/72 (58%) Query: 17 IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKY 76 +P KTVE +M+E + L +G +I I G G F + RA R GRNP TG+ ++++ Sbjct: 41 LPKKTVESLFDDMVELVGKHLKKGSKIRISGLGIFQVKKRASRQGRNPATGEAMKIKASK 100 Query: 77 VPHFKPGKELRD 88 FK ++L++ Sbjct: 101 TVGFKIARDLKE 112 >UniRef50_B3DWZ9 Bacterial nucleoid DNA-binding protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWZ9_METI4 Length = 109 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 2/92 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+ +L+ +++T+ + +P + V +E+L+ + E IE+R FG F + R R Sbjct: 1 MTRRDLVVKVSTK-TGLPQQEVAKIFEEILDVFMEVFKKKETIELRNFGVFEVTLRKARI 59 Query: 61 GRNPKTGDK-VELEGKYVPHFKPGKELRDRAN 91 GRNP+ +K + + + V FKPGKE++ N Sbjct: 60 GRNPRNPEKDILIPPRAVIRFKPGKEVKGILN 91 >UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 Tax=cellular organisms RepID=C7M6F9_CAPOD Length = 104 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+E++ +++ + + V+ V+ + + +TL G+ + +RGFGSF + RA +T Sbjct: 1 MTKAEIVSKISDKLG-LDKNDVQLTVENFMNEVINTLESGQNVYLRGFGSFIIKTRAEKT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGK 84 GRN +++ +P FKP K Sbjct: 60 GRNISKNTTLKIPAHNIPAFKPAK 83 >UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWF3_VESOH Length = 109 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 5/89 (5%) Query: 1 MTKSELIERLATQQ--SHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 +TK ++ L +H+ A ++ + + + TLA GE +++ FG+F + ++ Sbjct: 3 ITKKDIANVLVKSMDITHVQALSIT---HDFFDQIKQTLASGESVKLSSFGNFIIREKSS 59 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELR 87 R GRNPKTG+ VE+ + V FK G +L+ Sbjct: 60 RVGRNPKTGEMVEISARRVVVFKSGPKLK 88 >UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium RepID=C3WAE9_FUSMR Length = 106 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 43/91 (47%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E +E + E K LE + L +G+ + GFG F RA RT Sbjct: 1 MTKKEFVELFGAKAELKTKVEAEKLTKAFLETLEEVLVKGDSVAFIGFGKFEAAKRAERT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 NP+T +++ + V FKPGK L ++ N Sbjct: 61 CINPQTKKPMKIAARKVAKFKPGKNLLEKMN 91 >UniRef50_B9XSG3 Histone family protein DNA-binding protein n=4 Tax=Chlamydiae/Verrucomicrobia group RepID=B9XSG3_9BACT Length = 119 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 2/88 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK +L+ R++ + + + ++ K L+++A L++G+++E+R FG F + R R Sbjct: 3 MTKRDLVIRISNETGLVQQQVLDVVQK-TLDYIAEALSKGDKVELRNFGVFEVKVRKARI 61 Query: 61 GRNPKT-GDKVELEGKYVPHFKPGKELR 87 GRNP V + + V FKPGKE+R Sbjct: 62 GRNPNAPATDVPIPQRSVVKFKPGKEMR 89 >UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGM2_9BACT Length = 91 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++++E L ++ + K + V E+ + + ++I GFG+F + R R Sbjct: 1 MTKADIVE-LIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG + +E + V F+P + +D N Sbjct: 60 GRNPKTGVETVIEPRTVVVFRPSQIFKDEVN 90 >UniRef50_C6JJT3 Predicted protein n=4 Tax=Fusobacterium RepID=C6JJT3_FUSVA Length = 111 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAV-KEMLEHMASTLAQGERIEIRGFGSFSLHYRAPR 59 MTK E +E T+ + I K D + K ++ + L +GE + GFG F RA R Sbjct: 6 MTKKEFVELFGTK-AGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAAR 64 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 T NP+T +++E K V F+ GK L ++ N Sbjct: 65 TCVNPQTKKPMKVEAKKVAKFRAGKNLLEKMN 96 >UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YLD8_THEYD Length = 94 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++L+ ++ +P + V+ + E M L + E ++I GFG F++ + R Sbjct: 1 MTKADLVN-FIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNPKT VE++ + V F+P ++L+ Sbjct: 60 GRNPKTMQIVEIKPRKVVTFRPSEQLKQ 87 >UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales RepID=IHFA_POLNA Length = 123 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+ L E L +Q + + ++ + E ++ L +G+ ++I GFG+F + +APR Sbjct: 13 LTKAHLAE-LLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRP 71 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 GRNP+TG+ + +E + V F +L+++ Sbjct: 72 GRNPRTGEAIPIESRRVVTFHASHKLKEQ 100 >UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR Length = 101 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 37/70 (52%) Query: 22 VEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFK 81 E A+ +LE + S + I GFGSF + R R GRNPKTG K+ + P FK Sbjct: 30 AEKALNWVLESIISATKHQHSVNITGFGSFGIQSRKSREGRNPKTGAKMTIPAYKQPVFK 89 Query: 82 PGKELRDRAN 91 G +L++ N Sbjct: 90 AGSKLKEACN 99 >UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9H9_MAGSM Length = 109 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M LI+++A +++ A+ E V+++L+ + L++ E + + FG F++ P Sbjct: 1 MDAKGLIQQIARKRNLSIAQVTE-IVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWL 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GR+P+TG+ ++L GK VP FK ELR R N Sbjct: 60 GRHPQTGEMMKLPGKNVPFFKSDSELRKRLN 90 >UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE87_9FIRM Length = 84 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+++ +A ++ +I K E V +++ + +L+ GE +++ GFG+F L + R Sbjct: 1 MIKTDVARSIA-EKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERA 59 Query: 61 GRNPKTGDKVELEGKYVPHFK 81 RNPKTG+ V++ + P F+ Sbjct: 60 ARNPKTGETVQVPATHYPTFR 80 >UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGK9_KYTSD Length = 106 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 25 AVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGK 84 V +++ M +A G + + GFG+F RAPRTGRNP+TG+ V + G P F+P Sbjct: 23 CVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRTGRNPRTGEVVRIPGTAGPRFRPSP 82 Query: 85 ELR 87 R Sbjct: 83 MFR 85 >UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 Tax=cellular organisms RepID=B9LTH2_HALLT Length = 206 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 11/75 (14%) Query: 23 EDAVKEMLEHM--AST--LAQGERI-------EIRGFGSFSLHYRAPRTGRNPKTGDKVE 71 ED K LE A+T L +G+R+ E +GFG+FS+ R+ RTGRNP+TG +++ Sbjct: 127 EDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNPQTGKEIQ 186 Query: 72 LEGKYVPHFKPGKEL 86 + K V FK G EL Sbjct: 187 IAAKNVVKFKAGAEL 201 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE +A++ S + + A+ + L +G+ + GFGSFS+ R+ RT Sbjct: 1 MNKAELIESMASE-SGLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSART 59 Query: 61 GRNPKT 66 GRNP + Sbjct: 60 GRNPSS 65 >UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5 Length = 113 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE++ + A++ E AV + + +L + E ++I F +F + +R+ R Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTE-AVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERM 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 R+PKTG+K++ + VP F GK L+ Sbjct: 60 SRHPKTGEKIKTPAREVPVFSAGKRLK 86 >UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG Length = 101 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL +A +++ + + + +L+ + L + + + + GFG+F +R RT Sbjct: 1 MRKPELAAVIA-EKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGART 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G+NP+TG+ V+++ FKPGK L+D N Sbjct: 59 GKNPQTGEPVKIKASNTVAFKPGKNLKDSVN 89 >UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=Bacteroidales RepID=C7XFY9_9PORP Length = 98 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + EL++ L +++ +P V V + +A + +GE I ++GFGSF ++ R Sbjct: 8 MNRGELVQSL-VEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG++V + + FK G +L N Sbjct: 67 ARNPKTGEEVMITPRVSVKFKAGSDLLKELN 97 >UniRef50_C1DT75 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=3 Tax=Sulfurihydrogenibium RepID=C1DT75_SULAA Length = 100 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 43/72 (59%) Query: 20 KTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPH 79 K V D + E++ + + +G+++ I GFG+F + R + GRNPKTG++ + + Sbjct: 27 KIVNDTFDMISEYLTTDIKEGKKVMISGFGTFIIKRRKGKVGRNPKTGEEKLIPDRLGIS 86 Query: 80 FKPGKELRDRAN 91 FK GKEL+ + N Sbjct: 87 FKAGKELKKKIN 98 >UniRef50_P64387 Probable DNA-binding protein HU n=12 Tax=Chlamydiaceae RepID=DBH_CHLMU Length = 100 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK +LI ++ Q I V ++ L+ M L QG+R+E R FG + R P+ Sbjct: 4 MTKKKLISTIS-QDHKIHPNHVRTVIQNFLDKMTDALVQGDRLEFRDFGVLQVVERKPKV 62 Query: 61 GRNPKTGD-KVELEGKYVPHFKPGKELR 87 GRNPK + + + F PGK ++ Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMK 90 >UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEN1_RHOVA Length = 245 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+++L E + ++ +P + V+ +L+ + L +GE I++ FGSF L ++ R Sbjct: 20 LTRADLAEAV-FEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERV 78 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ V + + V FK ++DR N Sbjct: 79 GRNPKTGEIVPITPRRVIVFKASNIMKDRIN 109 >UniRef50_C1EA69 Predicted protein n=2 Tax=Micromonas RepID=C1EA69_9CHLO Length = 118 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 10 LATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKT-GD 68 L ++ I K E A+K +L + + GER+ +GFGSF RA RTG NP+ Sbjct: 35 LMASEAGISKKQAEIALKSLLAGIEGAVVAGERVTFQGFGSFESVARAARTGVNPQNPTQ 94 Query: 69 KVELEGKYVPHFKPGKELRDRAN 91 K+++ P FK G + N Sbjct: 95 KIKIPASMAPKFKAGSAFKSAVN 117 >UniRef50_B2V9T2 Histone family protein DNA-binding protein n=3 Tax=Sulfurihydrogenibium RepID=B2V9T2_SULSY Length = 99 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 8/88 (9%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFS-LHYRAPR 59 M K ++++ + + + K+++D V E+ E MA LA+GE+IEIR GSF L + P Sbjct: 1 MKKPDIVKYIKEKHPEMDLKSIKDVVDEIFEVMAEALAKGEKIEIRKIGSFRVLKRKKPL 60 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELR 87 GR + K HFKPGK L+ Sbjct: 61 KGRKRVSYSK-------TVHFKPGKVLK 81 >UniRef50_Q12P41 Histone-like DNA-binding protein n=9 Tax=Shewanella RepID=Q12P41_SHEDO Length = 94 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +LI ++ Q +T + ++++L + L +GE++ + FG+F L YR P+ Sbjct: 1 MNKQQLIASMSRQLQQSQRQTKME-LEQVLASIKQALIEGEKVFLPQFGTFELSYRLPQI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 R+P+TG +E+EG+ VP K L+ N Sbjct: 60 ARHPQTGASIEVEGQNVPRIKFSPNLKAALN 90 >UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN Length = 92 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 TK+EL+ +A +++ I +DA++ +E + +L G+ + + GFG+F RA T Sbjct: 3 TKAELVTAIA-EKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTA 61 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+ V F+ G+ L+ N Sbjct: 62 RNPRTGETVNRPASKTARFQVGEGLKSSLN 91 >UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WS11_RHOS5 Length = 90 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + KS+L+ +A ++ + V+ + E ++ +A+ + G+ I + GFGSF +R RT Sbjct: 4 LNKSDLVSTVA-EKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPART 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGK 84 GRNP+TG+ V + F P + Sbjct: 63 GRNPRTGEAVAIPASTSIGFTPSR 86 >UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 Tax=cellular organisms RepID=Q4ZXI2_PSEU2 Length = 93 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +LI +A + P T A++++ +A L +G I + G + R RT Sbjct: 3 LTKDQLIADIA-EAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPART 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG +E+ K V F P K L D N Sbjct: 62 GRNPSTGAAIEIAAKKVIKFVPAKVLTDSIN 92 >UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales RepID=IHFA_RHOP2 Length = 123 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 40/69 (57%) Query: 26 VKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKE 85 V+ +L+ + L +GE +++ FGSF + + R GRNPKTG +V + + V FKP Sbjct: 32 VELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIGRNPKTGTEVPISPRRVMVFKPSAI 91 Query: 86 LRDRANIYG 94 L+ R N G Sbjct: 92 LKQRINANG 100 >UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae RepID=C9M6K0_9BACT Length = 131 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 2/92 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+EL+E + + + AV ++ ++ L+QG ++++ GFG+F + R+ RT Sbjct: 21 VTKTELVE-FVRENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSART 79 Query: 61 GRNPKTGDK-VELEGKYVPHFKPGKELRDRAN 91 GRNP+ K V + K VP FK GK LR + Sbjct: 80 GRNPQDPTKTVHIPAKKVPVFKAGKLLRSAVD 111 >UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH Length = 90 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%) Query: 1 MTKSELIERLATQQS--HIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 MTK ELI+RLA + + + V DA+++++ LA G I + G F L +A Sbjct: 1 MTKQELIQRLAERANVGKVETLLVVDALEQLIRE---ELAAGGEIPLARTGKFRLREQAA 57 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRD 88 R GRNPKTG+ V + + F P K L+D Sbjct: 58 RMGRNPKTGESVMIPARRKIVFTPAKALKD 87 >UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides RepID=C6IB23_9BACE Length = 96 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +LI +A + S++ + + V+ ++E +A L QGE + + GFG+F + R R Sbjct: 1 MKKIDLIRSIAVK-SNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 G N TG+ + + GK FKPG ++ Sbjct: 60 GYNLSTGEIMTIPGKKTVRFKPGAKM 85 >UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q397_CATAD Length = 167 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 7/92 (7%) Query: 1 MTKSELIERLATQQS--HIPAKTVEDAVKE-MLEHMASTLAQGERIEIRGFGSFSLHYRA 57 + K++L +A Q S A+ DAV + ++ H+A+ GER++I GFG+F RA Sbjct: 2 VNKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAA----GERVQILGFGTFDSVQRA 57 Query: 58 PRTGRNPKTGDKVELEGKYVPHFKPGKELRDR 89 R GRNP+TG +++ P F G+ R R Sbjct: 58 ARLGRNPQTGAAIQVPAGTSPRFHAGQTFRTR 89 >UniRef50_C6HZV1 Putative integration host factor, alpha subunit HimA like protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZV1_9BACT Length = 104 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 2/84 (2%) Query: 1 MTKSELIERLATQQSHI--PAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M +++++E I P K V +A+ ++E + +++ GE +++ GFG+F + R Sbjct: 1 MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60 Query: 59 RTGRNPKTGDKVELEGKYVPHFKP 82 R GRNPKTG+ + ++ V F+P Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRP 84 >UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7A84 Length = 88 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI+ +A + + + A+ +++ + T+ +GE I + GFGSF + R R Sbjct: 1 MNKTELIKEVALK-GKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERN 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 G NP TG + + K F+PG ++R Sbjct: 60 GHNPSTGGSMVIPAKRQVKFRPGSKMR 86 >UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 Tax=Proteobacteria RepID=A1WDL1_ACISJ Length = 91 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + +LI+ +A A T + ++ + + +A+G +++ GFG+F A RT Sbjct: 1 MNRQDLIDAIAEDTEASKAATTR-FLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNPKTG +++ + P F PG +D Sbjct: 60 GRNPKTGAPIKIPSTHKPKFTPGATFKD 87 >UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JSK6_RHOER Length = 183 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI+ L T++ +T DAV+ +++ + + +GE + I GFG F RA R Sbjct: 1 MNKAELIDVL-TEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 RNP+TG+ V+++ VP F+PG + + Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFK 86 >UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZA3_PELTS Length = 92 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 19 AKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVP 78 AK DAV E + + A + +RGFG+F + R+PR GR+ +TG + + K V Sbjct: 22 AKRALDAVTEAITFAS---ANHNTVRLRGFGAFIIRDRSPRAGRDIRTGQPISIPAKKVI 78 Query: 79 HFKPGKELR 87 FKPGK LR Sbjct: 79 VFKPGKALR 87 >UniRef50_D2QT12 Histone family protein DNA-binding protein n=17 Tax=Bacteroidetes RepID=D2QT12_9SPHI Length = 100 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+++I + + ++ I V + ++ + +LA+GE I +RGFGSF RA + Sbjct: 1 MTKADVIAEI-SDKTGIDKAEVTNTLETFFSVVKDSLAEGENIYVRGFGSFINKKRAKKV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGK 84 RN + ++ ++P FKP K Sbjct: 60 ARNISKNTAMVIDEHFIPSFKPAK 83 >UniRef50_C7H232 DNA binding protein HU n=3 Tax=Ruminococcaceae RepID=C7H232_9FIRM Length = 103 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+S++IE +A + A+ VE + + + +A L E++ I GFG F + R P+ Sbjct: 1 MTRSQMIETVARKTGFTEAQ-VETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKA 59 Query: 61 GRNPKTGDKVELEGKYVPHFK 81 NPKT LE +P FK Sbjct: 60 YTNPKTKVSSRLESTSIPGFK 80 >UniRef50_Q2SSG4 DNA-binding protein, HU n=1 Tax=Mycoplasma capricolum subsp. capricolum ATCC 27343 RepID=Q2SSG4_MYCCT Length = 92 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK ELI ++A + + + K V VK++ E ++ L + + I FG F++ + R Sbjct: 1 MTKKELINKIALE-TEVSKKEVNLIVKKVFELISKNLLDKKEVLISDFGKFTILQKVSRK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 G NP T K+ + FKP K+L++ Sbjct: 60 GVNPITRQKMVIPASKTVKFKPSKQLKE 87 >UniRef50_Q11NU3 DNA-binding protein HU n=74 Tax=Bacteroidetes RepID=Q11NU3_CYTH3 Length = 110 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+++I +A +++ I V V+ + + ++++G I +RGFGSF RA + Sbjct: 1 MTKADVINEIA-EKTGIDKADVTTTVEAFFKVVKDSMSEGHNIYVRGFGSFINKKRARKV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGK 84 RN + ++ Y+P FKP K Sbjct: 60 ARNISKNTAIIIDEHYIPSFKPAK 83 >UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio RepID=B8DML6_DESVM Length = 95 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 1 MTKSELIERL--ATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 +TK+E + L A + + E A +A +A G + + G G+FS+ RA Sbjct: 2 LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RTGRNP+TG + + + F K L D N Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTLVDGLN 94 >UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=Alphaproteobacteria RepID=IHFA_BRASO Length = 119 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 26 VKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKE 85 V+ +L+ + L +GE +++ FGSF + + R GRNPKTG +V + + V FKP Sbjct: 32 VELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIGRNPKTGTEVPISPRRVMVFKPSAI 91 Query: 86 LRDRAN 91 L+ R N Sbjct: 92 LKQRIN 97 >UniRef50_B4U8N4 Histone family protein DNA-binding protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U8N4_HYDS0 Length = 99 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS++I+++ + ++ K ++ ++ L+ + L Q ERIE+R G F L + + Sbjct: 1 MKKSDIIKQI-DKYTNYSQKDIKLVIEYFLDAIMEGLIQDERIELRRLGIFLLKKKPSKM 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 NP+TG + + +Y+P+FK GK ++ N Sbjct: 60 VINPRTGVQTLVSERYLPYFKMGKYIKKELN 90 >UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LFF2_RHOVA Length = 126 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 7 IERLATQ--QSH-IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRN 63 + +LAT+ ++H + K + + E + + L +G RI I G G+ + RA RTGRN Sbjct: 40 LRQLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTGRN 99 Query: 64 PKTGDKVELEGKYVPHFKPGKELRD 88 P TG+ +E++ F+ K+L + Sbjct: 100 PATGEAIEIKASKKVAFRAAKDLSE 124 >UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0E2_PHYMT Length = 96 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 5/90 (5%) Query: 1 MTKSELIERLA--TQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M K E I++L+ + + K + +AV ++ + L Q E+I I GFG+F + R+ Sbjct: 1 MNKIEFIKQLSDKLETTEKEGKKIINAV---IDVIRINLLQNEKILITGFGTFCVKTRSE 57 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRD 88 R G++PKT + +++ K +P FK K +D Sbjct: 58 REGKHPKTREIIKIPAKKIPSFKMSKRFKD 87 >UniRef50_Q4A8U1 Bacterial nucleoid DNA-binding protein n=5 Tax=Mycoplasma RepID=Q4A8U1_MYCH7 Length = 96 Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELIE++A + +++P K +E + E A + + ++ I FG+F ++ + Sbjct: 7 MNKKELIEQIAIK-TNLPIKNIELVLNEFFGITADVVKKQGKLVINSFGTFQGVFKPASS 65 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 NP T ++ + K FKP K L+D Sbjct: 66 SFNPLTKTQITVNAKTTVRFKPSKVLKD 93 >UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella RepID=A1S612_SHEAM Length = 91 Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 26 VKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKE 85 ++++L + L +GE + + FG+F L Y PR RNPKTG+ +E+ G P FKP Sbjct: 25 LEQILASIRQALEEGETLYLPQFGTFELRYHLPRQVRNPKTGELMEVAGFNQPSFKPAPA 84 Query: 86 LRD 88 L+ Sbjct: 85 LKQ 87 >UniRef50_B1A4K2 Integration host factor subunit A-like protein n=2 Tax=Gammaproteobacteria RepID=B1A4K2_9GAMM Length = 112 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 19 AKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVP 78 A+T+ D + + TLAQGE +++ GFG+F L + R GRNPKT VE+ + V Sbjct: 23 ARTIVD---RFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARPGRNPKTKVPVEITARRVV 79 Query: 79 HFKPGKELRDRAN 91 F + L+ N Sbjct: 80 TFHASQSLKGHCN 92 >UniRef50_Q73M03 DNA-binding protein, HU family n=1 Tax=Treponema denticola RepID=Q73M03_TREDE Length = 106 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFS---LHYRAP 58 +K ++I+ + K + L+ ++ L QG +EIRG GSF LH R Sbjct: 6 SKIDIIDSVYRNNPQYQLKQINAIANLFLDELSVLLQQGIPVEIRGLGSFDFAVLHGR-- 63 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRD 88 + RNPKTG+ V + FKPGKEL++ Sbjct: 64 KNARNPKTGEAVLTADRCKVRFKPGKELKE 93 >UniRef50_B4U6N1 Histone family protein DNA-binding protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6N1_HYDS0 Length = 102 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 6/97 (6%) Query: 1 MTKSELIE----RLATQQSHIPAKTVEDAVKEMLEHMASTLAQGE--RIEIRGFGSFSLH 54 M K +L++ +L Q + + + V + L + + + +I++ GFG+F + Sbjct: 1 MRKKDLLDQVMIKLQKQNTKLKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIK 60 Query: 55 YRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 R PR GRNPKTGD ++ +Y FKP + + N Sbjct: 61 ERKPRIGRNPKTGDLYKIPPRYNLTFKPSQNFVLQVN 97 >UniRef50_Q8I3A2 Bacterial histone-like protein n=5 Tax=Plasmodium RepID=Q8I3A2_PLAF7 Length = 189 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK ++IE ++ + KTVE + + +++ L E+I I FG F +R R Sbjct: 58 ITKKQIIEEVSMETKE-NKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMFYNIFRKKRC 116 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 +N +T + +E+E ++PHFK K ++ Sbjct: 117 IKNLRTKEDIEIESSHMPHFKFSKVFKE 144 >UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus Pelagibacter RepID=Q4FLU7_PELUB Length = 102 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 1 MTKSELIERLATQQSHIPAKTV-EDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPR 59 +TK +LI + Q +K + E+ + + L + L +++++ FG+FS+ + R Sbjct: 8 LTKKDLINSIYMQIGF--SKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSR 65 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKT ++ + + V FK KE +D N Sbjct: 66 IGRNPKTKEQTTISNRDVVLFKASKEFKDLVN 97 >UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae RepID=Q1DCD2_MYXXD Length = 89 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+EL+E +A Q + + K+ + + ++ + + R GFG++S+ R R Sbjct: 1 MTKAELVEVVAAQ-TRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 RNP+T + ++L+ F+P KEL++ Sbjct: 60 IRNPQTNEMMKLKASKTIGFRPAKELKN 87 >UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA Length = 88 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL + +A S + AV + E +A+ +++ I GFG+FS R R Sbjct: 1 MNKGELTKAVAAA-SGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP T + +++ K FKP L+D Sbjct: 60 GRNPATKETIKIPEKTSLAFKPASALKD 87 >UniRef50_A3EV93 Putative integration host factor, alpha subunit HimA like n=2 Tax=Leptospirillum sp. Group II RepID=A3EV93_9BACT Length = 98 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%) Query: 1 MTKSELIERLA--TQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M + ++++R+ + S AK V +LE +++TL GE ++I GFG+F + Sbjct: 1 MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKEL 86 R GRNPKTG+ V + + F P + L Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSL 88 >UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteria RepID=Q3SRD9_NITWN Length = 99 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 39/69 (56%) Query: 20 KTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPH 79 K E + +M+ + L +G+RI I G G + RA R GRNP TG++++++ Sbjct: 29 KAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARKGRNPATGEEIQIKASKKVA 88 Query: 80 FKPGKELRD 88 F+ KEL++ Sbjct: 89 FRAAKELKE 97 >UniRef50_C3Q103 DNA-binding protein HU n=2 Tax=Bacteroides RepID=C3Q103_9BACE Length = 92 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+++A + + I V ++ L+ +A G + IRGFG+ S + + Sbjct: 1 MRKEELIKQVA-ESTGIAICEVRTVIEAALKETVDAVANGRTLYIRGFGTLSPKHYKRKV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 RN + + + Y PHFKP K ++R Sbjct: 60 ARNIHKNETIVIAEHYTPHFKPAKSFKNR 88 >UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 Tax=Beijerinckiaceae RepID=B2ICU5_BEII9 Length = 122 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 T+++L++ + T S + + + LE ++ L +GE +++R FG FS+ + R G Sbjct: 21 TRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG 80 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG +V ++ + V FK L N Sbjct: 81 RNPRTGVEVPIKPRRVLTFKASPVLAASVN 110 >UniRef50_C8X523 Histone family protein DNA-binding protein n=2 Tax=Desulfovibrionales RepID=C8X523_DESRD Length = 98 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+++++ + Q A+ V++ V++ML+ M ++ + + I GFG F + + PR Sbjct: 6 LTKADIVDAIYEQGQRSRAE-VKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRK 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+T + + L G+ V F+ + R N Sbjct: 65 GRNPQTEEAITLPGRTVVVFRLSRRFRAELN 95 >UniRef50_B3DZP2 Bacterial nucleoid DNA-binding protein n=2 Tax=Verrucomicrobia RepID=B3DZP2_METI4 Length = 99 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 3 KSELIERLATQQSHIPAKTV-EDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 K+ L+E + K + E +V ++ + + + + +++ GFG+F + R R G Sbjct: 11 KASLVEVVQKNMGKDTTKALAEKSVDAVINGLKTGVLKNGIVQLIGFGTFRVITRKARMG 70 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDR 89 NPKTG+K++++ F PGKEL+++ Sbjct: 71 VNPKTGEKIKIKASKTVRFSPGKELKEK 98 >UniRef50_B7J8S4 DNA-binding protein HU family protein n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J8S4_ACIF2 Length = 91 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 39/62 (62%) Query: 23 EDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKP 82 ED V+ ++E + +++G ++ I FG+F +RA R GRNP+TG ++E+ + V FK Sbjct: 27 EDIVQHLVESIVELVSEGHKVRIHQFGTFQQIHRAARMGRNPQTGGELEIPERKVLTFKA 86 Query: 83 GK 84 K Sbjct: 87 SK 88 >UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZC9_HYPNA Length = 91 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 43/78 (55%) Query: 12 TQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVE 71 ++ +P K E V + ++ M L +G+++ I G G + R GRNP TG++++ Sbjct: 12 SEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKGRNPATGEEIK 71 Query: 72 LEGKYVPHFKPGKELRDR 89 ++ F+P K+L++R Sbjct: 72 IKASKKVAFRPSKDLKER 89 >UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9J7_9PORP Length = 90 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++ I+ +A ++ + K + + ++E + + +GER+ + GFGSF + RA R Sbjct: 1 MNKTDFIKTVA-DKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 G NP++G ++++ FKP L Sbjct: 60 GINPRSGKTIDIKASKSIKFKPSTAL 85 >UniRef50_C6ZBE9 DNA binding protein HU n=7 Tax=Bacteroides RepID=C6ZBE9_9BACE Length = 90 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI ++ ++++ P K V + + + ++ L + + + I+ FG+F + R Sbjct: 1 MNKTDLI-KMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARI 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 RNP TG+ VE+ K V FKP K + Sbjct: 59 ARNPATGEPVEVPEKEVVKFKPSKNI 84 >UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=B2IE05_BEII9 Length = 171 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%) Query: 17 IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKY 76 I K + V E+L + L +GE + + FG+F + + R GRNP+TG + + Sbjct: 87 ISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRIGRNPRTGVAAVIPPRR 146 Query: 77 VPHFKPGKELRDRAN 91 V FK K L DR N Sbjct: 147 VLKFKASKVLLDRLN 161 >UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi (class) RepID=A9AXB4_HERA2 Length = 95 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K E I +A +++ I K V ML+ ++ L GE++ + GFG+F + R R Sbjct: 1 MQKIEFIAEVA-ERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 G NPKT +++ +E P F L+ Sbjct: 60 GVNPKTRERMTIEATKTPGFSASNSLK 86 >UniRef50_C3CT70 DNA-binding protein HU n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CT70_BACTU Length = 94 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+E++ +++ + + AV + + L GE++ ++GFG F R R Sbjct: 1 MNKNELLEKMK-ERNRLSKSENQLAVDTFINIIYEALQNGEKVSLKGFGQFVTKERKSRN 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 R P + +V + K +P F+PG+E +++ Sbjct: 60 IRIPSSEKEVRVPAKEIPAFEPGEEFKNKV 89 >UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytoplasma RepID=Q2NIZ7_AYWBP Length = 106 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGE---RIEIRGFGSFSLHYRA 57 M K + + +LA +++ I K + +E + T + E ++ + GFG+F YR Sbjct: 1 MNKLKFLRKLA-EKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRN 59 Query: 58 PRTGRNPKTGDKVELEGKYVPHFKPGKELR 87 R G+NP+TG + + K VP FK K L+ Sbjct: 60 AREGKNPRTGKTIYIPAKKVPTFKFSKLLK 89 >UniRef50_B6YQX6 DNA-binding protein HU n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YQX6_AZOPC Length = 102 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E++ +A + + I ++V ++E + + +L+ GE I +R FG+F RA + Sbjct: 1 MTKKEIVVTIA-ENTGIDRESVLAVIEEFMREVTFSLSSGENIYLRFFGTFKAKKRAAKP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RN K + L +YVPHFKP +++ Sbjct: 60 ARNIKKNTTIFLPERYVPHFKPSDYFKNKV 89 >UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q602W2_METCA Length = 95 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMAS-TLAQGERIEIRGFGSFSLHYRAPR 59 M +S+LI + + KTV V L ++A LA G+ + I G ++ RA R Sbjct: 1 MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDR 89 TGRNP+TG+ VE+ K V K L++R Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKER 90 >UniRef50_O67461 DNA-binding protein HU n=3 Tax=Aquificaceae RepID=DBH_AQUAE Length = 94 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%) Query: 1 MTKSELIERLATQ-----QSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHY 55 MTK E+ E + + I K V + V E+ + L +GE+++I GFG+F + Sbjct: 1 MTKKEIAEEIYDRLIRDYNVKIQKKEVYNLVSEVFTIIQECLLKGEKVKISGFGTFVVKT 60 Query: 56 RAPRTGRNPKTGDKVELEGKYVPHFKPGKEL 86 R P+ G N K + VE+ + + FKP K Sbjct: 61 RKPKKGMNIKKREIVEVPERKIVLFKPSKNF 91 >UniRef50_A8PMN2 Integration host factor subunit alpha (IHF-alpha) n=1 Tax=Rickettsiella grylli RepID=A8PMN2_9COXI Length = 102 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++LI L Q+S + V E + L QGE ++I G G F + R Sbjct: 4 LTKADLIHSLRQQESSLSRLVANKLVDAFFEQIMFALEQGESVKISGLGRFRRRLKKERP 63 Query: 61 GRNPKTGDKVELEGKYVPHFK 81 GRNP+TG ++ + V F+ Sbjct: 64 GRNPQTGVTTQVSSRNVVLFQ 84 >UniRef50_A4MZU5 Integration host factor alpha-subunit n=1 Tax=Haemophilus influenzae 22.1-21 RepID=A4MZU5_HAEIN Length = 91 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK ++IE L+ + H+ + ++ V+ LE + S+L G+ +++ GFG+F L ++ R Sbjct: 4 ITKLDIIEYLS-DKYHLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGK 84 GRNPK + + H GK Sbjct: 63 GRNPKQVMLCQFLRAELSHLNLGK 86 >UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID=DBH_DEIRA Length = 122 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K++L+E +A Q+ + K E+A+ MLE + S L G+ + + G G+ S+ A RT Sbjct: 34 VAKTQLVEMVA-DQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAART 92 Query: 61 GRNPKTGDKVEL-EGKYVPHFKPGKELR 87 G P T +K+++ GK V FK L+ Sbjct: 93 GVRPGTSEKIQIPAGKKV-AFKVASTLK 119 >UniRef50_C6IN85 DNA-binding protein HU n=2 Tax=Bacteroides RepID=C6IN85_9BACE Length = 95 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+++I R+ +++ I +TV ++ ++ + L + + +RGFG+FSL RA + Sbjct: 1 MTKADIINRV-SEELGIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 +N + + + + +PHFKP + Sbjct: 60 AQNIQQHTTICIPARKIPHFKPSESF 85 >UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepID=Q2SRR9_MYCCT Length = 90 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 37/66 (56%) Query: 23 EDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKP 82 E V + + ++ L +G+ + + GFG F + R+ R G NP TG+K+ + FKP Sbjct: 22 EKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREGVNPSTGEKIIIPASRSARFKP 81 Query: 83 GKELRD 88 K+L++ Sbjct: 82 AKQLKE 87 >UniRef50_Q9ZL08 DNA-binding protein HU n=24 Tax=Epsilonproteobacteria RepID=DBH_HELPJ Length = 94 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+E I+ + + + E+A+ + + L++GE +E+ GFG F + + Sbjct: 1 MNKAEFIDLVKKAGKYNSKREAEEAINAFTLAVETALSKGESVELVGFGKFETAEQKGKE 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 G+ P + + E K VP FKPGK L+ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQK 89 >UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU3_9FIRM Length = 95 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K L + L+ Q ++ K AV + M+ LA ++I FG F + R R Sbjct: 5 VNKESLTQTLSIQL-NMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRM 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NP T +++ ++ +P F+P + L+++ N Sbjct: 64 GINPVTKERMMIQATKLPKFRPSQTLKNKCN 94 >UniRef50_C7LTK6 Histone family protein DNA-binding protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTK6_DESBD Length = 109 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 37 LAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 LA+G+ I + G GSFS+ A R GRNP+TG+ + + + HFK K LR+ N Sbjct: 54 LAKGQGISLPGLGSFSVMLHAARMGRNPRTGETIAIPARRRIHFKTCKGLRELLN 108 >UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales RepID=A6LB49_PARD8 Length = 94 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 5/93 (5%) Query: 1 MTKSELIERLA--TQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M K+ELIE LA T AK V DA +E + +++ E I + GFG+ + Sbjct: 1 MNKAELIEALADKTGLQKQEAKKVLDA---YIEIVTERMSENEEIVLVGFGTLIPRPQTQ 57 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 R RNPKTG V + + FKPGK L + N Sbjct: 58 RLARNPKTGTPVMIPARTTVKFKPGKFLLEAMN 90 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel... 136 2e-31 UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr... 130 9e-30 UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba... 130 1e-29 UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al... 129 4e-29 UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr... 127 1e-28 UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga... 126 3e-28 UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par... 125 5e-28 UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr... 124 1e-27 UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G... 122 2e-27 UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID... 122 3e-27 UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al... 122 3e-27 UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr... 122 4e-27 UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr... 122 4e-27 UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr... 122 5e-27 UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID... 121 8e-27 UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr... 120 1e-26 UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr... 120 1e-26 UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce... 119 2e-26 UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr... 118 6e-26 UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al... 118 6e-26 UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr... 117 8e-26 UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH... 116 2e-25 UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D... 115 5e-25 UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT 115 6e-25 UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr... 114 7e-25 UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep... 114 7e-25 UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa... 114 8e-25 UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ... 114 1e-24 UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie... 113 2e-24 UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi... 113 2e-24 UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH 113 2e-24 UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B... 112 3e-24 UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A... 112 4e-24 UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T... 110 1e-23 UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri... 110 1e-23 UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact... 110 1e-23 UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re... 110 1e-23 UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ... 110 1e-23 UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T... 110 2e-23 UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc... 109 2e-23 UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D... 109 3e-23 UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ... 109 4e-23 UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding p... 109 4e-23 UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba... 108 6e-23 UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D... 108 6e-23 UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia... 108 7e-23 UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter... 107 8e-23 UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ... 107 8e-23 UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 T... 107 9e-23 UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l... 107 1e-22 UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T... 107 1e-22 UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ... 107 1e-22 UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D... 107 1e-22 UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T... 107 2e-22 UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a... 106 2e-22 UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C... 106 2e-22 UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T... 106 2e-22 UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P... 106 2e-22 UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R... 105 3e-22 UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios... 105 3e-22 UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo... 105 4e-22 UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH 105 4e-22 UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete... 105 5e-22 UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re... 104 8e-22 UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T... 104 9e-22 UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=... 104 1e-21 UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ... 104 1e-21 UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ... 104 1e-21 UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID... 104 1e-21 UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba... 104 1e-21 UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha... 104 1e-21 UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T... 103 2e-21 UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ... 103 2e-21 UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R... 103 2e-21 UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil... 103 2e-21 UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 T... 103 2e-21 UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti... 102 3e-21 UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re... 102 3e-21 UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube... 102 3e-21 UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T... 102 4e-21 UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ... 102 5e-21 UniRef50_A0L712 Histone family protein DNA-binding protein n=5 T... 101 7e-21 UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale... 101 9e-21 UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 T... 101 9e-21 UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=P... 101 1e-20 UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi... 100 1e-20 UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T... 100 1e-20 UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopi... 100 1e-20 UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu... 100 2e-20 UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ... 100 3e-20 UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T... 99 3e-20 UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ... 99 4e-20 UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T... 99 4e-20 UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI... 99 4e-20 UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p... 99 4e-20 UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G... 99 4e-20 UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R... 99 4e-20 UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T... 99 4e-20 UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II... 99 5e-20 UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 T... 99 5e-20 UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga... 99 5e-20 UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto... 99 5e-20 UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T... 99 5e-20 UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T... 99 5e-20 UniRef50_Q6ANC3 Related to integration host factor, alpha subuni... 99 6e-20 UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand... 99 6e-20 UniRef50_A8PM48 Integration host factor, beta subunit n=1 Tax=Ri... 98 7e-20 UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ... 98 7e-20 UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctom... 98 8e-20 UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T... 98 9e-20 UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr... 98 9e-20 UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T... 98 9e-20 UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G... 98 1e-19 UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ... 98 1e-19 UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr... 98 1e-19 UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso... 97 1e-19 UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabac... 97 1e-19 UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B... 97 1e-19 UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta... 97 1e-19 UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T... 97 1e-19 UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 T... 97 1e-19 UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacterida... 97 1e-19 UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin... 97 1e-19 UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla... 97 2e-19 UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria... 97 2e-19 UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T... 97 2e-19 UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T... 97 2e-19 UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0... 97 2e-19 UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A... 97 2e-19 UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria Re... 97 2e-19 UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 ... 97 2e-19 UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A... 97 2e-19 UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter... 96 3e-19 UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=... 96 3e-19 UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteob... 96 4e-19 UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium Re... 96 4e-19 UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=ro... 96 4e-19 UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T... 95 6e-19 UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D... 95 6e-19 UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone... 95 6e-19 UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 T... 95 7e-19 UniRef50_A3ER44 Putative integration host factor, beta-subunit n... 95 7e-19 UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ... 95 7e-19 UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein... 95 8e-19 UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A... 95 8e-19 UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T... 95 8e-19 UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_... 95 9e-19 UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabac... 95 9e-19 UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria... 94 9e-19 UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bactero... 94 9e-19 UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T... 94 1e-18 UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T... 94 1e-18 UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T... 94 1e-18 UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D... 94 1e-18 UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Ta... 94 1e-18 UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria Re... 94 1e-18 UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 T... 94 2e-18 UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace... 94 2e-18 UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=... 94 2e-18 UniRef50_B1A4K2 Integration host factor subunit A-like protein n... 94 2e-18 UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 T... 94 2e-18 UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 94 2e-18 UniRef50_B8II37 Histone family protein DNA-binding protein n=1 T... 93 2e-18 UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ... 93 3e-18 UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph... 93 3e-18 UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T... 93 3e-18 UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Cur... 92 4e-18 UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=B... 92 4e-18 UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 ... 92 5e-18 UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 T... 92 6e-18 UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T... 92 7e-18 UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=R... 92 7e-18 UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacte... 92 7e-18 UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=K... 92 7e-18 UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th... 92 7e-18 UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellul... 91 8e-18 UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T... 91 9e-18 UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=A... 91 9e-18 UniRef50_Q1V1Q3 Integration host factor beta-subunit (IHF-beta) ... 91 9e-18 UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide... 91 1e-17 UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ... 91 1e-17 UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet... 91 1e-17 UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T... 91 1e-17 UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T... 91 1e-17 UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida... 91 2e-17 UniRef50_C6HZV1 Putative integration host factor, alpha subunit ... 91 2e-17 UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R... 90 2e-17 UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1... 90 2e-17 UniRef50_A3EV93 Putative integration host factor, alpha subunit ... 90 2e-17 UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s... 90 3e-17 UniRef50_UPI0001699D1F integration host factor, beta subunit n=1... 89 3e-17 UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen... 89 3e-17 UniRef50_B6BR84 Integration host factor beta-subunit n=3 Tax=roo... 89 4e-17 UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=... 89 5e-17 UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S... 89 5e-17 UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=D... 89 5e-17 UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2... 89 5e-17 UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 89 5e-17 UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfo... 89 6e-17 UniRef50_B7JAF9 Integration host factor, alpha subunit, putative... 89 6e-17 UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus... 88 8e-17 UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 ... 88 8e-17 UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabac... 88 8e-17 UniRef50_Q57267 DNA-binding protein HU n=41 Tax=Borrelia RepID=D... 88 9e-17 UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T... 88 1e-16 UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabac... 88 1e-16 UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell... 88 1e-16 UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales Rep... 87 1e-16 UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 T... 87 1e-16 UniRef50_B7J8S4 DNA-binding protein HU family protein n=1 Tax=Ac... 87 1e-16 UniRef50_A8PMN2 Integration host factor subunit alpha (IHF-alpha... 87 1e-16 UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 T... 87 1e-16 UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobact... 87 2e-16 UniRef50_C8X523 Histone family protein DNA-binding protein n=2 T... 87 2e-16 UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium Rep... 87 2e-16 UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 ... 87 2e-16 UniRef50_B5JEX1 DNA-binding protein HU n=1 Tax=Verrucomicrobiae ... 86 2e-16 UniRef50_C6JJT3 Predicted protein n=4 Tax=Fusobacterium RepID=C6... 86 3e-16 UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepI... 86 3e-16 UniRef50_Q98RC2 DNA-BINDING PROTEIN HU n=2 Tax=Mycoplasma RepID=... 86 3e-16 UniRef50_C7LTK6 Histone family protein DNA-binding protein n=1 T... 86 3e-16 UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 ... 86 3e-16 UniRef50_D0RRC9 Integration host factor subunit beta (IHF-beta) ... 86 4e-16 UniRef50_B3DWZ9 Bacterial nucleoid DNA-binding protein n=1 Tax=M... 86 4e-16 UniRef50_B4U6N1 Histone family protein DNA-binding protein n=1 T... 86 4e-16 UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae Re... 86 5e-16 UniRef50_C8PNN7 DNA-binding protein, HU family n=1 Tax=Treponema... 85 5e-16 UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 T... 85 6e-16 UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=A... 85 6e-16 UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus... 85 7e-16 UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptun... 85 7e-16 UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaprote... 85 7e-16 UniRef50_B9XSG3 Histone family protein DNA-binding protein n=4 T... 84 9e-16 UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. S... 84 1e-15 UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococc... 84 1e-15 UniRef50_UPI0001BC59DB DNA-binding protein HU n=1 Tax=Fusobacter... 84 1e-15 UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri... 84 1e-15 UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 ... 84 1e-15 UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytop... 84 2e-15 UniRef50_O67923 Integration host factor beta subunit n=2 Tax=Aqu... 84 2e-15 UniRef50_B3DZP2 Bacterial nucleoid DNA-binding protein n=2 Tax=V... 84 2e-15 UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylo... 84 2e-15 UniRef50_C6IN85 DNA-binding protein HU n=2 Tax=Bacteroides RepID... 84 2e-15 Sequences not found previously or not previously below threshold: UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Des... 93 3e-18 UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 T... 86 4e-16 UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Ca... 86 5e-16 UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidale... 86 5e-16 UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bactero... 85 6e-16 UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 ... 84 1e-15 UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=... 84 1e-15 >UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms RepID=IHFB_HALHL Length = 102 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 66/91 (72%), Positives = 76/91 (83%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE +A++Q H+ K VEDAVK+MLEHM+ TLA G+RIEIRGFGSFSLH+R R Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ V L KYVPHFKPGKELR+R N Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERVN 91 >UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria RepID=IHFB_BORPD Length = 119 Score = 130 bits (329), Expect = 9e-30, Method: Composition-based stats. Identities = 55/94 (58%), Positives = 69/94 (73%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI LA + + A+ + AVK ML+ M LA G+RIEIRGFGSFSL R+PR Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPK+G++V + GK VPHFK GKELR+R ++ G Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVDLAG 94 >UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria RepID=IHFB_THISH Length = 96 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 66/92 (71%), Positives = 75/92 (81%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE LA +QSH+ K VE +VK MLEH++ LA G+RIEIRGFGSFSLH+R PR Sbjct: 1 MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG+ V L GKYVPHFKPGKELR+R N Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERVNA 92 >UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria RepID=IHFB_OLICO Length = 106 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 47/94 (50%), Positives = 67/94 (71%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++R+A H+ + VE+ V +LE + S LA+G+R+E+RGFG+FS+ +R R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNP+TG+ V +E K VP FK GKE+R+R N G Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRDG 94 >UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria RepID=IHFB_PSEPK Length = 100 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 67/93 (72%), Positives = 74/93 (79%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIER+ T Q + +K VE A+K MLE M+ LA G+RIEIRGFGSFSLHYRAPR Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPKTG V LEGK+VPHFKPGKELRDR N Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVNED 93 >UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria RepID=IHFB_AERS4 Length = 94 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 73/92 (79%), Positives = 81/92 (88%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKS+LIE+LA + H+PAK VE A+KE+LE MASTL G+RIEIRGFGSFSLHYRAPR Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTGDKVEL GKYVPHFKPGKELR+R NI Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVNI 92 >UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQA5_9PROT Length = 113 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 48/91 (52%), Positives = 69/91 (75%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL+++LA + H+ K VE V + +H+++ L QG+R+E+RGFG+FS+ YR RT Sbjct: 1 MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ VE+E K+VP FK GKE+R+R N Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERLN 91 >UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria RepID=IHFB_RALEJ Length = 137 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 49/93 (52%), Positives = 66/93 (70%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSEL+E+LA + + + + +VK +L+ M+ LA G RIEIRGFGSF L+ R PR Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPK+G++V + K VPHFK GKELR+R + Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVDRN 93 >UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=Gammaproteobacteria RepID=IHFB_SHEDO Length = 95 Score = 122 bits (308), Expect = 2e-27, Method: Composition-based stats. Identities = 72/92 (78%), Positives = 81/92 (88%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE+LAT+QS + AK VE A+KEMLE MA+TL G+RIEIRGFGSFSLHYRAPRT Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG VEL+GKYVPHFKPGKELR+R + Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERVDA 92 >UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD Length = 90 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI +A Q + + K AV + E + L +G ++++ GFGSF + R+ R Sbjct: 1 MNKTDLINAVAEQ-AELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+++E+ P FKPGK+L+D N Sbjct: 60 GRNPQTGEEIEIPATKNPAFKPGKQLKDAVN 90 >UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria RepID=IHFB_SINMW Length = 103 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 64/91 (70%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ +A + H+ + VE+ V +L+ + LA G R+E+RGFG+FS+ R R+ Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TGD V +E K+VP FK GKELR+R N Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLN 91 >UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria RepID=IHFB_BURTA Length = 107 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 51/91 (56%), Positives = 69/91 (75%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSEL+ +LA++ + K + AVK ML+ M+ L++G RIEIRGFGSF L+ R R Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPK+G+KV++ K+VPHFKPGKELR+R + Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERVD 91 >UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria RepID=IHFB_PARL1 Length = 110 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 64/91 (70%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL+ RLA H+ + VE V + + +++ LA+G+R+E+RGFG+FS+ R RT Sbjct: 1 MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ V ++ K VP FK GKELR+R N Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERLN 91 >UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria RepID=IHFB_HERAR Length = 101 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 55/92 (59%), Positives = 69/92 (75%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI RLA + + AK + AVK +L+ M+ LA G+RIEIRGFGSF+L+ R PR Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPK+GDKV + K VPHFKPGK+LR+R + Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERVDA 92 >UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU Length = 92 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A + S + K AV + + + L G++I++ GFG+F + R+ R Sbjct: 1 MNKTELINAVA-EASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++E+ VP FKPGK L+D Sbjct: 60 GRNPQTGEEIEIPASKVPAFKPGKALKDAV 89 >UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria RepID=IHFB_RHOCS Length = 93 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 44/93 (47%), Positives = 64/93 (68%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI RLA + H+ + VE V + + + LA+G+R+E+RGFG+FS+ R R Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+TG+ V++ K++P FK GK+LR+R N Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLNTD 93 >UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria RepID=Q1D6M8_MYXXD Length = 127 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 43/92 (46%), Positives = 58/92 (63%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+SELIER+ + +H+P + VE V + E M+ L G RIE+RGFG F + R RT Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG +V + + F GK+LR+R N Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERLNA 92 >UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms RepID=IHFB_CAUCN Length = 96 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 49/94 (52%), Positives = 61/94 (64%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI RLA + H+ K VE V +LE M L G R+E+RGFG+ S+ R RT Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNP+TG+ V++ K+VP FK GKELR R N G Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLNADG 94 >UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria RepID=IHFB_NITEC Length = 105 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 53/91 (58%), Positives = 68/91 (74%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI +LA + + AK E VK +L+ MA +LA+GERIEIRGFGSF L+YR R Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPK+G+KV + KYVPHFK GK++R+ + Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELID 91 >UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria RepID=IHFB_BRUMB Length = 94 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 42/91 (46%), Positives = 66/91 (72%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ +A++ H+ + V + V + + + + LA+G R+E+RGFG+FS+ R R+ Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ V++E K+VP FK GK+LRDR N Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLN 91 >UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria RepID=IHFB_MANSM Length = 94 Score = 117 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 60/94 (63%), Positives = 72/94 (76%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE L + I K+VE+AVKE+LEHM+ L G+RIEIRGFGSFSLH+R PR Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPKTG +V+L+ K VPHFK GKELR+R + Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERVDFNA 94 >UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD Length = 90 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI ++A +++ + K + V + + +A +LAQG+ +++ GFG+F + RA R Sbjct: 1 MNKTELIHQVA-ERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++++ P FK GK+L+D Sbjct: 60 GRNPQTGEEIDIAATKTPAFKAGKQLKDAV 89 >UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC Length = 90 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI +A Q + + K AV + E + ++LA+GE++++ GFG+F + RA R Sbjct: 1 MNKTDLINAVAEQ-ADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ VP FK GK L+D Sbjct: 60 GRNPQTGKEIDIPASKVPAFKAGKALKDAV 89 >UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT Length = 98 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+E ++ SH+ K V+ + L + +L +GE++ + GFG+F + RT Sbjct: 1 MNKTELVESVS-DSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+TG+ +E+ + VP F GK LR+ ++ Sbjct: 60 GRNPRTGEALEIPARTVPKFSAGKSLREAIDLA 92 >UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium tumefaciens RepID=IHFB_AGRT9 Length = 102 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 39/93 (41%), Positives = 62/93 (66%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ +A + ++ + E+AV +L+ + L +GER++IR FG+F + +R R+ Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP G+ V +E K+VP F+ GKE+RDR N Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLNTA 93 >UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH Length = 91 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+L+ ++ Q S++ A+ M + S L G+ + I GFGSF + RA RT Sbjct: 1 MNKSDLVAVIS-QISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ ++++ VP FK GK L++ N Sbjct: 60 GRNPQTGEAIQIKASKVPAFKAGKLLKESVN 90 >UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMW2_9FIRM Length = 91 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ +A +++ + K E AV + E + L +G+++++ GFG+F + R+ R Sbjct: 1 MNKNELVASVA-EKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARA 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+T + +++ P FK GK L+D N Sbjct: 60 GRNPRTNETIQIPASKNPAFKAGKALKDAVNA 91 >UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria RepID=B1I182_DESAP Length = 91 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A +++++ K E A+ MLE + L+ G+++++ GFG+F RA R Sbjct: 1 MNKAELISSVA-EKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++++ VP FK GKELR+ Sbjct: 60 GRNPQTGEEIDIAATKVPVFKAGKELRESV 89 >UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi RepID=A5CCR4_ORITB Length = 125 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 49/91 (53%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K+E + + +++ +E A+ +L + + G I I GFGSF + +RA R Sbjct: 34 LNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAARD 93 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NPKTG K+ + Y FKPGK L+D N Sbjct: 94 GHNPKTGAKIIIPESYQVVFKPGKTLKDACN 124 >UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms RepID=DBH_XYLFT Length = 94 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI+ +A +++ A+ ++ + L +G+ + + GFG+F + RA R Sbjct: 1 MNKTELIDGVAA-AANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG+ + + P FKPGK L+D Sbjct: 60 GRNPKTGEPIMIAASNNPSFKPGKALKDAV 89 >UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH Length = 89 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ +A + +P A+ M+E + L +G+ + + GFGSF + RA R Sbjct: 1 MNKSELIDAIAA-SADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG+++ + P F+PGK L+D Sbjct: 60 GRNPKTGEEITIPSAKTPKFRPGKALKDAL 89 >UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria RepID=Q2W3I2_MAGSA Length = 136 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K++L+ +A + + AV + E + S L G+ + + GFG+F++ RA Sbjct: 47 VNKNDLVTAVAG-AAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASE 105 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+K+ + P FK GK L+D Sbjct: 106 GRNPRTGEKISIPASKQPKFKAGKGLKDGI 135 >UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria RepID=Q2W5P8_MAGSA Length = 117 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +L+ ++A + S + ++ + + S L G+ + + GFGSFS+ RA + Sbjct: 27 MNKQDLVNKVA-ELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKE 85 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +++ P F GK L+D N Sbjct: 86 GRNPRTGATIKIAASKAPKFTAGKGLKDAVN 116 >UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK7_DESVV Length = 91 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 50/90 (55%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+EL+E++ + E A+ + +A +A GE + GFGSF + RA R Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++ + V F PGK L+D Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAV 90 >UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria RepID=DBH5_RHILE Length = 91 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ +A +++ + AV + + + + L I + GFGSF++ +RA Sbjct: 1 MNKNELVSAVA-EKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG +V++ + VP F PGK L+D N Sbjct: 60 GRNPSTGAEVDIPARNVPKFTPGKGLKDAVN 90 >UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria RepID=Q7WX14_RALEH Length = 114 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 52/91 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+ELIE +A + E+A+ L + +A+G+ + + GFG+FS RA R Sbjct: 22 MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+++++E FK G+ R+ N Sbjct: 82 ARNPRTGEEIKVEAARTVKFKAGQRFREAVN 112 >UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5 Length = 90 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ +A + +P A+ ++E + L G+ + + GFG+FS+ R R Sbjct: 1 MNKSELIDAIAA-SADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +E+ P FK GK L++ N Sbjct: 60 GRNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90 >UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root RepID=DBH2_BACSU Length = 92 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI ++A +Q + K +V+++ + ++ L GE++ I GFG+F + RA R Sbjct: 1 MNKTELIAKVAEKQ-GVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++++ P FKP K L+D Sbjct: 60 GRNPQTGEEIDIPATKAPAFKPAKALKDAV 89 >UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE Length = 112 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++LIE ++ + + K E V+ + + + +L G++IEIRGFGSF R PR Sbjct: 1 MTKADLIEEVS-RVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG +VE+ K +P+FKP KEL+D N Sbjct: 60 GRNPKTGARVEVPAKKIPYFKPSKELKDVVN 90 >UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AXT3_RUMGN Length = 92 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 56/92 (60%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+S+LI+ +A + + + ++ V L+ +A L G++++ GFGSF + RA RT Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+ G ++ +E FK GKEL+D+ N Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKVNA 92 >UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=Deltaproteobacteria RepID=IHFA_MYXXD Length = 129 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+++IE + ++ K + V+ + + + TL +G++I+I GFG+F + + R Sbjct: 1 MTKADIIEGVY-EKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG ++E+ + V F+P + L+ N Sbjct: 60 GRNPQTGKEIEISARRVLTFRPSQVLKSALN 90 >UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales RepID=A6TJN4_ALKMQ Length = 92 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 2/93 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L+ ++A ++S + K E A+ +E + L G+++++ GFG+F + R PR Sbjct: 1 MNKADLVAKMA-EKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQ 59 Query: 61 GRNPKTGDK-VELEGKYVPHFKPGKELRDRANI 92 GRNP+ ++ +E+ P FK GK L+++ N+ Sbjct: 60 GRNPRNPEQVIEIPASKAPVFKAGKTLKEKINV 92 >UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding protein n=8 Tax=Rhizobiales RepID=C5B6T6_METEA Length = 163 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 52/90 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +SEL+ RLA Q H+ K E V +L + L G+R+EIRGFG+FS R Sbjct: 59 MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+ V + K F+PGK +R R Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQRL 148 >UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria RepID=Q3A4K6_PELCD Length = 92 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ LA ++ + K E+ V +L+ M+ TL +G RIEIRGFGS + Sbjct: 1 MNKSELIDALAEKK-GLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+++E++ K +P FK GKELR+R N Sbjct: 60 GRNPKTGEEIEVKPKKLPFFKVGKELRERIN 90 >UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA Length = 91 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A ++S + K E A+K ++E + L +GE++++ GFG+F RA R Sbjct: 1 MNKAELITSMA-EKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+T + + + VP FK GKE +D+ N Sbjct: 60 GRNPRTKEVINIPATTVPVFKAGKEFKDKVN 90 >UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia RepID=Q2J6X1_FRASC Length = 94 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+L++R+A Q AV + + + +A GE++ I GFG F RA RT Sbjct: 1 MNKSQLVDRIAQQIEG-GRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP TG+ V + VP F+PG E + Sbjct: 60 GRNPATGEPVHVAASVVPKFRPGSEFKSSV 89 >UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria RepID=Q5ZUE2_LEGPH Length = 100 Score = 107 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ +A+ S + ++ + + L +G+++ I GFGSFS R+ RT Sbjct: 9 MNKSELVDAIAS-GSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSART 67 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ V FK GK L++ Sbjct: 68 GRNPQTGKTIQIKASRVAKFKAGKNLKEAV 97 >UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=Q0AI99_NITEC Length = 90 Score = 107 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELIE +A + + I +A+ L + L++ + + + GFG+F + RA RT Sbjct: 1 MNKSELIEAIA-RHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +++++ VP F GK L+D N Sbjct: 60 GRNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90 >UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6T8_9PROT Length = 100 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 48/88 (54%), Positives = 67/88 (76%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +S+LI +LA Q ++ AK VE V+ +L+ +A+T+++G R+EIRGFGSF L+YR PR Sbjct: 6 MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 65 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNPKTG K+E+ KY P FKPGK L++ Sbjct: 66 GRNPKTGAKIEVAAKYHPRFKPGKALKE 93 >UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX6_LEGLO Length = 92 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI ++ S + E A+ ++ + LA+G+ I + GF S S+ RT Sbjct: 1 MNKKELIAAIS-NTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG +E+ V FK G +L++ N Sbjct: 60 GRNPSTGQPIEIAASKVVSFKTGTKLKEAIN 90 >UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A1AW42_RUTMC Length = 91 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ +A +++ A+ + + +A + +++ GFGSF + RA RT Sbjct: 1 MNKSELIDAIAL-AANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG ++++ V FK GK L++ N Sbjct: 60 GRNPQTGATIQIKASKVAAFKAGKALKEAVN 90 >UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA Length = 91 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ +A + + + + + V + + L G + + GFG+F A R Sbjct: 1 MNKSELIQAIADE-AELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ + + + P F+ GK L+D N Sbjct: 60 GRNPKTGEPLTIAARKTPKFRSGKALKDAVN 90 >UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN Length = 90 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI+ +A + + K + A++ L+ + ++L +GE +++ GFG+F ++ RA RT Sbjct: 1 MNKTDLIDAIA-NAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ VP F GK L+D Sbjct: 60 GRNPQTGAEIQIAASKVPAFVSGKALKDAI 89 >UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A4JQB1_BURVG Length = 92 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+ +A + + V+ +L+ + +++ E +++ GFG+FS R+ RT Sbjct: 1 MNKQELIDAVAA-GAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG+++ + F GK +D N Sbjct: 60 GRNPTTGEEIAIAAANTVKFAAGKAFKDAVN 90 >UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation n=34 Tax=root RepID=B3R809_CUPTR Length = 92 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 51/91 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+ELI+ +A + E A+ L + +A+G+ + + GFG+FS R R Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+++++E FK G++ +D N Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91 >UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6 Length = 93 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI +A ++S + K E A+K +E + L GE++++ GFG+F RA R Sbjct: 1 MNKSELITSMA-EKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+T +++ + P FK GKEL+++ N Sbjct: 60 GRNPRTKEEITIPASIAPVFKAGKELKEKVNKN 92 >UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A9C1_THECD Length = 159 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++ELIE +A + V + E + + GER+ + GFG+F R RT Sbjct: 1 MNRTELIEAVAA-LAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ VE+ P F+ G+ +DR Sbjct: 60 ARNPRTGEPVEVPPTETPRFRAGQTFKDRV 89 >UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria RepID=IHFA_BORA1 Length = 116 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+EL E L ++ + + +D V E + LA+G+ +++ GFG+F + + PR Sbjct: 12 LTKAELAELL-FERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRP 70 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPKTG+ + + + V F ++L+ G Sbjct: 71 GRNPKTGETIPIAARRVVTFHASQKLKSTVEQSG 104 >UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS Length = 92 Score = 105 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+ +A Q + + + +LE + +++G+ +++ GFGSF RA RT Sbjct: 1 MNKQELIDAVAAQ-TGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ +++ F GK +D N Sbjct: 60 GRNPKTGETIKIPAAKTVKFTAGKAFKDAVN 90 >UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae RepID=Q8SME4_CYAME Length = 112 Score = 105 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A ++ + K V + + E+L +A L G+++++ GFG+FS YRA R Sbjct: 1 MDKTELISAVA-EKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARD 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++ + ++V F PG +L+ + Sbjct: 60 GRNPRTGERLIIPERHVVVFSPGSDLKQQV 89 >UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VZ6_DESDG Length = 95 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 1 MTKSEL----IERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYR 56 MTK+EL +E LA K V D + L+ + LA G+ + + GFG+F + R Sbjct: 1 MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60 Query: 57 APRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 R GRNPKTG+ VE+ F PGK L++ N Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN 95 >UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH Length = 91 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI L Q++ + + V+ + + LA ER+EIRG SF + T Sbjct: 1 MNKLELISVL-KQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG KV + K +P FK GKEL++R + Sbjct: 60 GRNPKTGAKVTIPAKKLPFFKCGKELKERVDF 91 >UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WDC5_BORBR Length = 93 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +LI L+ + + + E+ V + ++ L GE + G G FS RA RT Sbjct: 3 LTKKDLIATLSYE-TGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAART 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+TG+ VE+ F K L+D+ N Sbjct: 62 GRNPQTGEPVEIAASVAVKFSASKTLKDQVNA 93 >UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI Length = 105 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 51/90 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + + +L++++A++ + KT A+ LE +A LAQG +++ GFGSF + R RT Sbjct: 7 LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 +P+TG V + + F P + LR+R Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERL 96 >UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT Length = 93 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 49/90 (54%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +LI +A + K ++ AV MLE + L + R+EIRGFGSFS+ R RT Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 +NP+TG + + + HF K L+D Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGL 90 >UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular organisms RepID=IHFA_TOLAT Length = 106 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+++ E L T+ I + ++ V+ E + L GE+++I GFG+F L + R Sbjct: 3 LTKADIAEHLFTEL-GISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG+ + + + V F+PG++L+ R Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2 Tax=Burkholderiaceae RepID=B2AK36_CUPTR Length = 92 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 53/92 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI+ +A + E A+ L + T+A+G+ + + GFGSFS R R Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 RNP+TG+K+ ++ F+PG++ +D AN Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDAANA 92 >UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms RepID=DBHA_AERHY Length = 90 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L++ +A + + + + A++E++ + +L +G+ +++ GFG+F +++RA RT Sbjct: 1 MNKAQLVDAIAAK-ADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ VP F GK L+D Sbjct: 60 GRNPQTGKEIQIAAANVPSFVAGKALKDAV 89 >UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO Length = 91 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 K +LI ++A + + + K AV + + L++GE++++ GFG+F + RA R G Sbjct: 3 NKQDLIAKVA-EATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG ++++ VP FK GK L+D Sbjct: 62 RNPQTGAEIKIAASKVPAFKAGKALKDAV 90 >UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria RepID=IHFA_NITOC Length = 99 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+++ E L + + + ++ V+ E + L QGE +++ GFG+F L + R Sbjct: 3 LTKADMTETLYQEL-GLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPKTG+++ + + V F+PG++L+ R Y Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARVEAYA 95 >UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6F1_HAMD5 Length = 114 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI+ +A + + I + +L+ + +L + E +++ GFG+F++ +R R Sbjct: 1 MNKAQLIDEIA-ENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARN 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ +EL YVP K L+D Sbjct: 60 ARNPQTGEPIELPACYVPSLNFAKALKDAL 89 >UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX16_9DELT Length = 95 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++LI+ + + ++ + V+ L +L +GE + + GFG FS+ + R Sbjct: 3 LTKADLIQEVYQRH-NLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRR 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+++ L + V FKP LR R N Sbjct: 62 GRNPQTGEELMLAPRRVITFKPSGLLRQRVN 92 >UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS Length = 94 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 52/92 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++LI+++ + + ++V+ L L G + + GFG F++ ++ R Sbjct: 3 LTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSRR 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+TGD++ LE + V FKP LRD+ N Sbjct: 63 GRNPQTGDELTLEARRVVTFKPSGILRDKINA 94 >UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE Length = 90 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL +A +++ + + + +L+ + L + + + + GFG+F +R RT Sbjct: 1 MRKPELAAAIA-EKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G+NP+TG V+++ FKPGK LRD N Sbjct: 60 GKNPQTGQPVKIKASNTVAFKPGKALRDAVN 90 >UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F3B Length = 114 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +L+E +A + S K E AV +L+ + L QG+ +++ GFG F + R R Sbjct: 23 MNKEQLVEVVA-KSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARM 81 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRN KTG++VEL VP F G L+ N Sbjct: 82 GRNRKTGEEVELPAGKVPVFTAGITLKKALNR 113 >UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 Tax=Methylobacterium sp. 4-46 RepID=B0UCA4_METS4 Length = 102 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 53/91 (58%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +++LI+R+A H+P + V+ +L+ + L +G+RIE+RGFG R R Sbjct: 1 MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+ VE+ K F+ +E+ +R N Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERLN 91 >UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A906_GEMAT Length = 110 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 5/95 (5%) Query: 1 MTKSELIERLATQQSH-----IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHY 55 MTK++L+E + + + I K V L+ + L + + IE+RGFG+F + Sbjct: 1 MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60 Query: 56 RAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 R R RNP+TG VE+ + VP FKP KELR Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMV 95 >UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE Length = 92 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K E +E LA + + + A+ +L+ + +A GE++ GFGSF + RA RT Sbjct: 1 MNKGEFVEALADRL-DVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +++ VP F G L+ N Sbjct: 60 GRNPQTGASIKIAASRVPKFSAGATLKTAIN 90 >UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2T0_SALRD Length = 100 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++LI+++A + + V+ + + + +G RIE+R FG F + +RAPRT Sbjct: 3 MTKADLIDQIA-DGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+T + VE+E +Y P F+P +L + + Sbjct: 62 GRNPQTNEPVEIEDRYKPVFRPSDKLSEAVDAA 94 >UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 Tax=Anaeromyxobacter RepID=B4UEN5_ANASK Length = 90 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 50/90 (55%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++LIE++ + + V V + EH+A + + +R + GFG+F + RA R Sbjct: 1 MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ FKP EL+ Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90 >UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms RepID=DBH_GUITH Length = 93 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+LI ++A + +E + MLE + T+A GE++ + GFGSF R R Sbjct: 1 MNKSQLISKIAY-YTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+K+ L +P F G R++ N Sbjct: 60 GRNPRTGEKLFLPASRIPTFSVGNFFRNKVN 90 >UniRef50_A0L712 Histone family protein DNA-binding protein n=5 Tax=Magnetococcus sp. MC-1 RepID=A0L712_MAGSM Length = 91 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI +A Q+ + + V + + LA+GER+E+RGFG F R PR Sbjct: 1 MTKSELILTIAAQK-GLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRA 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+KV +E K HFKPG ++R R + Sbjct: 60 ARNPKTGEKVAVESKTAVHFKPGLDMRKRVD 90 >UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales RepID=A6LB49_PARD8 Length = 94 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE LA ++ + + + + +E + +++ E I + GFG+ + R Sbjct: 1 MNKAELIEALA-DKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRL 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 RNPKTG V + + FKPGK L + N + Sbjct: 60 ARNPKTGTPVMIPARTTVKFKPGKFLLEAMNAH 92 >UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVU7_ALIAD Length = 90 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL+ + + +P V + E L GE + + G F R+ R Sbjct: 1 MNKGELVAEVQAR-VGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARR 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+ +++ K F+P L+ R N Sbjct: 60 QRNPQTGEMIDVPEKATVRFRPSGALKGRVN 90 >UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=Planctomycetaceae RepID=C1ZKD3_PLALI Length = 171 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E+++ ++ + + ++ V++ + + TL RIE+R FG F + RA R Sbjct: 1 MTKKEIVKAISDEI-GLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TGDKV + K+V FKPGKE+ ++ Sbjct: 60 ARNPRTGDKVFVPEKFVVTFKPGKEMEEKV 89 >UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH73_THEYD Length = 92 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 57/91 (62%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELIER++ + + K +E + + + M TL++GE+IEIRGF +F + R R Sbjct: 1 MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+++++ + +FK K L++ N Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEALN 91 >UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 Tax=Cystobacterineae RepID=A7H8A7_ANADF Length = 126 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+LI L ++ + K E ++ + + M L +GE IEIRG G+F + + Sbjct: 1 MLKSDLINILVVKR-GVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG+ + ++ K F+ GKELRDR N Sbjct: 60 GRNPKTGEVIPVKPKRGILFRTGKELRDRVNR 91 >UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2Z0_9PLAN Length = 159 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK E+++ ++ + + ++ V++ + TL + RIE+R FG F + RA R Sbjct: 20 VTKKEIVKTISEEI-GLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARK 78 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+KV + K+V FKPGKE+ +R Sbjct: 79 ARNPRTGEKVYVPSKFVVTFKPGKEMEERV 108 >UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJS4_TERTT Length = 93 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L+++L T + +D V+ ++E + + LA+GER+++ G GSFS+ +R T Sbjct: 1 MRKTDLVKQLCT-LGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 G NP+TG+ + + K FK GK LRD Sbjct: 60 GINPQTGEALRIAAKNQIFFKAGKRLRD 87 >UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG Length = 101 Score = 99.8 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL +A +++ + + + +L+ + L + + + + GFG+F +R RT Sbjct: 1 MRKPELAAVIA-EKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGART 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G+NP+TG+ V+++ FKPGK L+D N Sbjct: 59 GKNPQTGEPVKIKASNTVAFKPGKNLKDSVN 89 >UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWH5_9PLAN Length = 180 Score = 99.4 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK E+++ ++ + + ++ V++ + + TL + RIE+R FG F + RA R Sbjct: 57 VTKKEIVKTISEEI-GLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARK 115 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG V + K+V FKPGKE+ ++ Sbjct: 116 ARNPRTGQPVYVAEKFVVTFKPGKEMEEKV 145 >UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria RepID=B1XSK3_POLNS Length = 106 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K+ELI +A + I E A+ +E++ + +G+ +++ GFG+F+ RA R Sbjct: 13 LNKAELIAAIADD-AEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARM 71 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ +++ F GK +D N Sbjct: 72 GRNPKTGEPLKIAAAKTVKFSAGKAFKDSVN 102 >UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum ferrodiazotrophum RepID=C6HU01_9BACT Length = 99 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 48/89 (53%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKS+L RLA + I + L+ M LA G+ +EIR FG +H +APR Sbjct: 1 MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 GRNPKTG V + + FK G+ L++ Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNA 89 >UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM Length = 91 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M EL +++ ++ + AV LE ++ +L Q + + GFG+FS+ RA R Sbjct: 1 MNLGEL-KKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+K+ + FK G+ LR++ N Sbjct: 60 GRNPQTGEKINISASRTIRFKAGQSLREKVN 90 >UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation n=3 Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT Length = 89 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L+ +A Q+S + K + A+ + + + +LA+G++++I GFG+F+L Y RT Sbjct: 1 MNKAQLVTAMA-QKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG +E+EG FK K L+D Sbjct: 60 GRNPQTGASIEIEGANKAVFKASKALKDVL 89 >UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=Gammaproteobacteria RepID=IHFA_SHEDO Length = 99 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+E+ E L + + + ++ V+ E + L GE++++ GFG+F L + R Sbjct: 3 LTKAEMAEHL-FETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG+ + + + V F+PG++L+ R Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales RepID=IHFA_RHOP2 Length = 123 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L E + Q+ + V+ +L+ + L +GE +++ FGSF + + R Sbjct: 8 VTRVDLCEAVY-QKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRI 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPKTG +V + + V FKP L+ R N G Sbjct: 67 GRNPKTGTEVPISPRRVMVFKPSAILKQRINANG 100 >UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UA57_9DELT Length = 92 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQS-HIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPR 59 M KSEL++ + +++ VE AV + L+ +A LA+ +++ I GFGSF APR Sbjct: 1 MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP G+ V++ FKPGK L++ Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAV 91 >UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=1 Tax=Persephonella marina EX-H1 RepID=C0QP77_PERMH Length = 95 Score = 99.0 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 51/90 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+L+ L + ++ K + + E M L++G+++EIRG GSF + + R Sbjct: 1 MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNPKTG VE+ K V HFK GK L+ + Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKKL 90 >UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=B2IE05_BEII9 Length = 171 Score = 98.6 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L + I K + V E+L + L +GE + + FG+F + + R Sbjct: 72 VTRKDLASSVY-DCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRI 130 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG + + V FK K L DR N Sbjct: 131 GRNPRTGVAAVIPPRRVLKFKASKVLLDRLN 161 >UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms RepID=DBH1_RHILE Length = 91 Score = 98.6 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ +A +++ + AV + E + S L G I + GFGSFS+ R Sbjct: 1 MNKNELVSAVA-EKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG +V++ + VP F GK L+D N Sbjct: 60 GRNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90 >UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BF20_STRRD Length = 106 Score = 98.6 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELIE+ A + + + + A++ +L + + +A +++ I GFGSF + ++ RT Sbjct: 12 MNKRELIEKAAAE-AGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPART 70 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 GRNP+TG+ +E+ + FKP Sbjct: 71 GRNPQTGEPLEIAETWTAKFKPSPGF 96 >UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA Length = 97 Score = 98.6 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++++E + Q +PAK V+++LE + S+L G+ + I GFG F + ++ R Sbjct: 3 LTKAQIVEEIHNQL-GLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRR 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP TGD + L+ + V F LRDR N Sbjct: 62 GRNPATGDSIILDARKVVTFTCSGVLRDRINSN 94 >UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=A0LI64_SYNFM Length = 96 Score = 98.6 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE LA + I K E AV + M + L + +R+EIRGFGSF + Sbjct: 1 MTKSELIETLA-KAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ +E+ K +P FK GKEL++R N Sbjct: 60 GRNPKTGELIEVNSKKLPFFKVGKELKERVN 90 >UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2 Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS Length = 103 Score = 98.6 bits (245), Expect = 6e-20, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ E+ E L Q + V L M L +GE I++ FG+F++ +APRT Sbjct: 13 LTRKEIAEELTGQL-GYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRT 71 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ + + + F+P K+LR++ N Sbjct: 72 GRNPRTGEPITITKRQAVSFRPSKKLREQVN 102 >UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4H0_HAMD5 Length = 119 Score = 98.6 bits (245), Expect = 6e-20, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE++ +S + +AV + + L + E ++I FG+F + +R R Sbjct: 1 MNKTELIEQV-RDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 RNPKTG+K++ + V F GK L+D ++ Sbjct: 60 SRNPKTGEKIKTPAREVAVFSAGKSLKDSVHLQA 93 >UniRef50_A8PM48 Integration host factor, beta subunit n=1 Tax=Rickettsiella grylli RepID=A8PM48_9COXI Length = 100 Score = 98.2 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 44/91 (48%), Positives = 57/91 (62%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI +L + + A TV+ +V+ +++ + TL QG RIEIRGFGSFSLHY A R+ Sbjct: 1 MLKSELINQLILKFPQLQASTVKKSVEHLIQLLEQTLHQGHRIEIRGFGSFSLHYNAARS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 NPKT + KY HFK GK L+ N Sbjct: 61 AFNPKTKEHFLAPEKYRIHFKMGKTLKYCMN 91 >UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae RepID=B4S407_PROA2 Length = 103 Score = 98.2 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 TK++L+ ++ + + E V + E + +L G+RIEIRGFGSF++ Y+ R Sbjct: 6 TKADLVNTIS-HTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERLA 64 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+KV +E K VP FK KE + Sbjct: 65 RNPRTGEKVSVEAKNVPTFKISKEFKHAV 93 >UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctomycetaceae RepID=A6CAS4_9PLAN Length = 148 Score = 97.8 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E+++ ++ + + ++ V++ + + TL +RIE+R FG F + RA R Sbjct: 1 MTKKEIVKVISEEI-GLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TGD+V++E KYV FKPGKE+ R Sbjct: 60 ARNPRTGDRVDVEEKYVVTFKPGKEMEKRV 89 >UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC Length = 101 Score = 97.8 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI L+ S + + AV+ +L+ + + G+ IEIRGFG F +R PR Sbjct: 10 MKKTDLILNLS-DSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQ 68 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NPKT ++ ++ K+VP FKPGK L++ N Sbjct: 69 GINPKTSERTQVGEKFVPFFKPGKLLKEIVN 99 >UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria RepID=Q39VS3_GEOMG Length = 91 Score = 97.8 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++++E++ ++ K + V+ + + TL GE+I+I GFG+F + +A R Sbjct: 1 MTKADIVEQIY-EKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRR 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TGD++ + + + FKP + L+ N Sbjct: 60 GRNPQTGDEIIISARRILTFKPSQVLKSSIN 90 >UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS Length = 124 Score = 97.8 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK LI+ +A + + ++ V++ L+ + L +G IEIRGFG+F+ R R Sbjct: 4 ITKQSLIQEIA-KSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARP 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+ V ++ + VP FK +++D+ N Sbjct: 63 ARNPRTGETVLIDERLVPTFKFSNDIKDKIN 93 >UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=Gammaproteobacteria RepID=IHFA_PSYA2 Length = 99 Score = 97.8 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TKS++IE L + ++ + V+ + ++ +L G+ +++ GFG+F L + R Sbjct: 4 LTKSDMIEHLMSHL-NLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRP 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ V + + V FK G++ R + + Sbjct: 63 GRNPKTGEPVAVSARRVVTFKTGQKFRQQVD 93 >UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJA9_9BACT Length = 95 Score = 97.8 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++L++ ++ + + I K V V +L + ++A+G IEIRGFG+F L R PR Sbjct: 1 MTKADLVKIIS-ENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKT KV + + VP FK +E ++ Sbjct: 60 GRNPKTDQKVPVPARTVPTFKFSREFKNAV 89 >UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group RepID=DBH_RICCN Length = 99 Score = 97.8 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 8/99 (8%) Query: 1 MTKSELIERL--------ATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFS 52 M K+E I + + E A+ +L+ + S + I I GFGSF Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60 Query: 53 LHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 +H+R R GRNPKTG K++++ P F+ G+++++ N Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 99 >UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani RepID=Q3J6Y8_NITOC Length = 94 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ + + +++ T + AV + + + L++ R+ + GFGSFS+ RA R+ Sbjct: 1 MNKTELVNFVVLK-ANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARS 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GR+P++G+ + ++ K P FKP K L++ Sbjct: 60 GRHPQSGEVIIIQAKSAPTFKPSKALKEIV 89 >UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B7U9_9PORP Length = 99 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + + IE++ + +P TVE V+ LE ++ L G + I+ FGSF + R Sbjct: 1 MNRKD-IEKITAARLGVPVTTVEPFVQAFLETVSDCLMYGHHVTIQRFGSFRRWEQTSRP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 RNP+TG+ LE + F PGK L ++ N Sbjct: 60 VRNPRTGEPCMLEPRTSVKFNPGKTLFEKMNTD 92 >UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales RepID=IHFA_POLNA Length = 123 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+ L E L Q + + ++ + E ++ L +G+ ++I GFG+F + +APR Sbjct: 13 LTKAHLAELLFEQI-GLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRP 71 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+ + +E + V F +L+++ Sbjct: 72 GRNPRTGEAIPIESRRVVTFHASHKLKEQI 101 >UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EUM1_9BACT Length = 102 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 47/90 (52%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TKSELI+ L + + K V + V ++ + +A+G + I GFG F RA RT Sbjct: 9 LTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAART 68 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP TG +++ P F GK +D Sbjct: 69 GRNPATGAVIKIAATTTPRFAAGKAFKDSV 98 >UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria RepID=B1Y0T8_LEPCP Length = 116 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 60/91 (65%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + KSELIE +A +++ I A++ ++ + STL +G+ + + GFG+F++ RA R+ Sbjct: 27 VNKSELIEHIA-EKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARS 85 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG ++++ VP F+PGK L+D N Sbjct: 86 GRNPRTGAVIKIKSSKVPKFRPGKALKDSLN 116 >UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BPZ9_RALP1 Length = 94 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + +L + +A + S+ + V + + + +A G+ ++I GFG+FS R R Sbjct: 1 MNRKDLAKAIADR-SNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARN 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 G NP TG+++++ F G LR N Sbjct: 60 GHNPGTGEEIQVPAVTTVRFSAGSRLRQAVNRE 92 >UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacteridae RepID=DBH1_BIFLO Length = 93 Score = 97.1 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 KS+L+ ++A Q+S++ E AV + + GE +++ G S RA RTG Sbjct: 4 NKSDLVSKIA-QKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTG 62 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+++++ Y G L+ Sbjct: 63 RNPRTGEQIDIPASYGVRISAGSLLKKAV 91 >UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis RepID=B2RHA9_PORG3 Length = 88 Score = 97.1 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++ I +A +++++ + AV E + + GE+I + GFG+FS+ RA R Sbjct: 1 MNKTDFIAAVA-EKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 G NPKT + + + V FKPG L Sbjct: 60 GINPKTKKSISIPARKVVRFKPGSTL 85 >UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii RepID=B6KEZ7_TOXGO Length = 235 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L+ +A + +P VE V L H++++L QG+++ + FGS L R R Sbjct: 121 VTRKDLVASVAAEL-QVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERV 179 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+++ + P F K L+D+ Sbjct: 180 ARNPRTGEQLTVPATTFPTFSFSKVLKDKV 209 >UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria RepID=Q0AZ79_SYNWW Length = 110 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ LA +++ I K + ++E + LA G++++I GFGSF + R R Sbjct: 1 MNKSELVKSLA-EKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 +P TG ++ + VP FKPGK L Sbjct: 60 VISPATGKEITVPATKVPAFKPGKSL 85 >UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q397_CATAD Length = 167 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K++L +A Q S V + + + +A GER++I GFG+F RA R Sbjct: 2 VNKADLAAEVAEQMSGAEP-DARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARL 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG +++ P F G+ R R Sbjct: 61 GRNPQTGAAIQVPAGTSPRFHAGQTFRTRV 90 >UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WS11_RHOS5 Length = 90 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + KS+L+ +A ++ + V+ + E ++ +A+ + G+ I + GFGSF +R RT Sbjct: 4 LNKSDLVSTVA-EKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPART 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKE 85 GRNP+TG+ V + F P + Sbjct: 63 GRNPRTGEAVAIPASTSIGFTPSRR 87 >UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2 Length = 96 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL+ +A ++S + E A+ ++ + TLA+GE++++ GFG+F R R Sbjct: 1 MNKSELLSSIA-KKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKARE 59 Query: 61 GRNPKT-GDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+ +K+++ P FK GK L++ N Sbjct: 60 GRNPRNPEEKIQIPASNAPVFKAGKSLKEAVN 91 >UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=Alphaproteobacteria RepID=IHFA_SILPO Length = 100 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L E + + + V+ ML HM+ L +GE+++I FG+FS+ ++ R Sbjct: 6 LTRMDLSEAVFRE-VGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARV 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG++V ++ + V F+P +++R Sbjct: 65 GRNPKTGEEVPIQPRRVLTFRPSHLMKERV 94 >UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria RepID=DBH_SYNY3 Length = 100 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Query: 1 MTKSELIERLATQQSH-----IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHY 55 M K EL+ + + I K V+ + ++ + +A+GE++ + GFGSF Sbjct: 1 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60 Query: 56 RAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 R R GRNPKTGDK+ + VP F GK +D+ Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 95 >UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 Tax=Bacteria RepID=D2Q2Y1_9ACTO Length = 97 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++EL+ +A + + IP E + + + + + +G+++ + G S RAPRT Sbjct: 1 MNRNELVAGVAAK-AGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 GRNP+TG+ + + Y G L+ Sbjct: 60 GRNPQTGEPLSIPAGYSVRLSCGSRLKAA 88 >UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=Alphaproteobacteria RepID=IHFA_DINSH Length = 101 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L + + + + V+ +L HM+ L +GE ++I FG+FS+ ++ R Sbjct: 6 LTRMDLSDAVFRE-VGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARI 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG++V + + V F+P +++R Sbjct: 65 GRNPKTGEEVPIHPRRVLTFRPSHLMKERV 94 >UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria RepID=Q121G1_POLSJ Length = 103 Score = 96.3 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++ELI+ +A + + + ++ +LE + + +G+ +++ GFG+F RA RT Sbjct: 1 MNRAELIDTIAAE-TDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G+NP+TG+ V++ VP F G + + + Sbjct: 60 GKNPRTGEAVKIPATTVPKFVAGAKFKAVVD 90 >UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHM4_DESMR Length = 92 Score = 95.9 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+ + ++ ++ + + V E + L G+R+E+RGFGSF++ T Sbjct: 1 MNKGELIKAV-GEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPKTG KVE++ K +P FK G++ ++ N Sbjct: 60 GRNPKTGIKVEVKPKKIPFFKTGRDFKNYLNRE 92 >UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteobacteria RepID=Q1GXQ0_METFK Length = 90 Score = 95.9 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL+ + + ++ A E + + + LA+G + + G G S+ RA R Sbjct: 1 MKKSELVALI--KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARA 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ + +E K P F K L+D N Sbjct: 59 GRNPRTGEIIPIEAKKTPKFSAAKALKDAVN 89 >UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium RepID=C3WGU4_9FUSO Length = 92 Score = 95.9 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 45/91 (49%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E + L + E V + E M TL GE I I +G + RAPR Sbjct: 1 MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRL 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG++V + + F+PGK ++ N Sbjct: 61 GRNPKTGEEVNIGERKSVKFRPGKAFLEKLN 91 >UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=root RepID=Q1V2L3_PELUB Length = 91 Score = 95.5 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +LI +L+ ++ E + + L + ++I GFG++ + R R Sbjct: 1 MNKKQLIAQLSGSL-NLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+++++ F P K L++ N Sbjct: 60 GRNPRTGEQIQIGASQKVKFLPAKALKEIFN 90 >UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 Tax=Desulfuromonadales RepID=B3EBV2_GEOLS Length = 93 Score = 95.1 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++LI+ +A QQ HI K V+E++ + +TL GE ++I FG F + + R Sbjct: 3 LTKNKLIQLVAEQQ-HITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARR 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ + +E + V FKP LR N Sbjct: 62 GRNPQTGEAITIEPRKVISFKPSVLLRQAIN 92 >UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGM2_9BACT Length = 91 Score = 95.1 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++++E + + + K + V E+ + + ++I GFG+F + R R Sbjct: 1 MTKADIVELIHEKL-GLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG + +E + V F+P + +D N Sbjct: 60 GRNPKTGVETVIEPRTVVVFRPSQIFKDEVN 90 >UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5 Length = 113 Score = 95.1 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE++ +S + +AV + + +L + E ++I F +F + +R+ R Sbjct: 1 MNKTELIEQV-RDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERM 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 R+PKTG+K++ + VP F GK L+ ++ Sbjct: 60 SRHPKTGEKIKTPAREVPVFSAGKRLKASVHLQ 92 >UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 Tax=Beijerinckiaceae RepID=B2ICU5_BEII9 Length = 122 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 T+++L++ + T S + + + LE ++ L +GE +++R FG FS+ + R G Sbjct: 21 TRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG 80 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG +V ++ + V FK L N Sbjct: 81 RNPRTGVEVPIKPRRVLTFKASPVLAASVN 110 >UniRef50_A3ER44 Putative integration host factor, beta-subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ER44_9BACT Length = 98 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 56/90 (62%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+ +LI+R+A + + I + V ++ E M S + +GE +EIR FG F +H+R PR Sbjct: 1 MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+KV + + F+PGK L+ R Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRM 90 >UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae RepID=Q1DCD2_MYXXD Length = 89 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+EL+E +A Q + + K+ + + ++ + + R GFG++S+ R R Sbjct: 1 MTKAELVEVVAAQ-TRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+T + ++L+ F+P KEL++ Sbjct: 60 IRNPQTNEMMKLKASKTIGFRPAKELKNSL 89 >UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7A84 Length = 88 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI+ +A + + + A+ +++ + T+ +GE I + GFGSF + R R Sbjct: 1 MNKTELIKEVALK-GKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERN 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 G NP TG + + K F+PG ++R Sbjct: 60 GHNPSTGGSMVIPAKRQVKFRPGSKMR 86 >UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=Alphaproteobacteria RepID=IHFA_BRASO Length = 119 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L E + Q+ + V+ +L+ + L +GE +++ FGSF + + R Sbjct: 8 VTRVDLCEAVY-QKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRI 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG +V + + V FKP L+ R N Sbjct: 67 GRNPKTGTEVPISPRRVMVFKPSAILKQRIN 97 >UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi (class) RepID=A9AXB4_HERA2 Length = 95 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K E I +A +++ I K V ML+ ++ L GE++ + GFG+F + R R Sbjct: 1 MQKIEFIAEVA-ERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 G NPKT +++ +E P F L+ Sbjct: 60 GVNPKTRERMTIEATKTPGFSASNSLK 86 >UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8 Length = 96 Score = 94.8 bits (235), Expect = 9e-19, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++L++++A Q + + K V+ V +L + LA G ++++ GFG+F + R RT Sbjct: 6 VTKADLVDQVA-QATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKART 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 G P T +K+++ P FKPGK L+D+ Sbjct: 65 GVKPGTKEKIKIPATQYPAFKPGKALKDKV 94 >UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B856_9PORP Length = 101 Score = 94.8 bits (235), Expect = 9e-19, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K L+E ++ + ++P V + + + +A +L + ER+ I+ FGSF L ++A R Sbjct: 1 MNKHSLVEIISDRL-NMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 RNPKTG+ + + + F PGK L D N Sbjct: 60 VRNPKTGEPMIFQPRNSVKFVPGKHLVDLLNRQA 93 >UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria (class) RepID=DBH1_STRCO Length = 93 Score = 94.4 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQG-ERIEIRGFGSFSLHYRAPR 59 M +SEL+ LA + + + K + + E + +++G E++ I GF +F +RA R Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAAR 59 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDR 89 T RNP+TG+ +++ Y G +L++ Sbjct: 60 TARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89 >UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7AFK0_9BACE Length = 106 Score = 94.4 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+ +A S + + + +A+GE + G G+F + R Sbjct: 1 MNKQELIKAVAA-ASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP TG + + + V F PGK LR+ Sbjct: 60 GRNPFTGLGMRIPTRKVVKFSPGKSLREAV 89 >UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio RepID=B8DML6_DESVM Length = 95 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%) Query: 1 MTKSELIERLATQQSHI--PAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 +TK+E + L + + E A +A +A G + + G G+FS+ RA Sbjct: 2 LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RTGRNP+TG + + + F K L D N Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTLVDGLN 94 >UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB6_THET1 Length = 84 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGR 62 K+ELI ++A +++ + V+ +EML + S+L +GE + IRGFG+F + R+PR GR Sbjct: 4 KTELINQVA-ERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGR 62 Query: 63 NPKTGDKVELEGKYVPHFKPGK 84 NP+TG+++E+ G F+ K Sbjct: 63 NPRTGEEIEIPGGKRVTFRMSK 84 >UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria RepID=Q01W44_SOLUE Length = 108 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K ++I + + + I E AV+ + E M L QG+RIE+RGFG F++ R Sbjct: 20 LIKLDIINEVVNR-TGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGI 78 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 GRNP+TG +V + FKPGKEL Sbjct: 79 GRNPRTGAEVSIPPGKAVRFKPGKEL 104 >UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP Length = 92 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI ++ ++S++ +++ ++ L + +L G +++ GFG+F ++ RA R Sbjct: 1 MNKSELINIIS-KKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG + + P F GK + Sbjct: 60 GRNPQTGQTIHISATKTPVFISGKTFKTAI 89 >UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Tax=Bacteria RepID=Q6KHG3_MYCMO Length = 108 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +LI +A Q+ K VE+ V LE ++S L ++I + FG F + RA R+ Sbjct: 18 ITKKDLIATIAENQNK-SKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARS 76 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 G NPKT + ++++ FK K L+D+ N Sbjct: 77 GINPKTSEIIQIKATKSVKFKVSKSLKDQVNF 108 >UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q2LW81_SYNAS Length = 91 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +L+E + K ++ V +L+ M L +GE + + GFG+F + R+ RT Sbjct: 1 MNKGDLVEAVTKVVGK--KKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSART 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ K VP F GK+L++ Sbjct: 59 GRNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88 >UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QR54_PERMH Length = 96 Score = 94.0 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 4/94 (4%) Query: 1 MTKSELIERL-ATQQSHIPAKTVEDAVKEMLEHMASTLAQGE---RIEIRGFGSFSLHYR 56 MTK+E++E + + + K V D V + E + L GE +++I GFG+F + R Sbjct: 1 MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60 Query: 57 APRTGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 AP+ GRNPKT ++ + ++ FK GK L++ Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKESL 94 >UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae RepID=DBH_CAMJR Length = 98 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++ I +A Q + + K A ++ + LA+G+ I GFG+FS RA R Sbjct: 1 MTKADFISLVA-QTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 R P TG +++ V FK GK L++ Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNLKEAV 89 >UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR Length = 101 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 8/99 (8%) Query: 1 MTKSELIERLATQQSH--------IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFS 52 M K+E I + H E A+ +LE + S + I GFGSF Sbjct: 1 MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60 Query: 53 LHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 + R R GRNPKTG K+ + P FK G +L++ N Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACN 99 >UniRef50_B1A4K2 Integration host factor subunit A-like protein n=2 Tax=Gammaproteobacteria RepID=B1A4K2_9GAMM Length = 112 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L LA V + + TLAQGE +++ GFG+F L + R Sbjct: 3 VTRKDLAYYLA-DTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKT VE+ + V F + L+ N Sbjct: 62 GRNPKTKVPVEITARRVVTFHASQSLKGHCN 92 >UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERD0_ACIF5 Length = 91 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K E + LA Q + E + + + L +I GF +F + + R Sbjct: 1 MNKLEFVAALA-QHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG ++++ K FK GKE D+ N Sbjct: 60 GRNPATGQEIDIPAKKSIKFKAGKEFADKVN 90 >UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH Length = 90 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK ELI+RLA +++++ V + + + LA G I + G F L +A R Sbjct: 1 MTKQELIQRLA-ERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARM 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG+ V + + F P K L+D Sbjct: 60 GRNPKTGESVMIPARRKIVFTPAKALKDAV 89 >UniRef50_B8II37 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8II37_METNO Length = 113 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +++LI+R+A H+ E V+ +L+ M L Q ERI +RGFG+F + R R Sbjct: 1 MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NP+TG+ V + + F+ E+ R N Sbjct: 60 GHNPRTGEAVAVPARRDVRFRASTEMLHRLN 90 >UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN Length = 92 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 TK+EL+ +A +++ I +DA++ +E + +L G+ + + GFG+F RA T Sbjct: 3 TKAELVTAIA-EKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTA 61 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+ V F+ G+ L+ N Sbjct: 62 RNPRTGETVNRPASKTARFQVGEGLKSSLN 91 >UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUL7_9CAUD Length = 92 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++E + +A+ +I E V ++ + + +A G +++ GFG+F + ++ R Sbjct: 1 MNRTEFVAHIAS-TQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP G +++E K V FK G+ L++ AN Sbjct: 60 GRNPLNGQTIQIEAKNVVKFKVGEGLKNAAN 90 >UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular organisms RepID=B1Y4B9_LEPCP Length = 131 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE LA Q + + + +L+ + +T+ +G + + GFGSF H RA R Sbjct: 1 MNKAELIEVLAKQHT-LSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARN 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NP TGDK+++ +P F PG + + Sbjct: 60 GVNPGTGDKIKIAAVKLPKFTPGTAFKAAVD 90 >UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Desulfovibrio vulgaris RepID=Q72CZ7_DESVH Length = 95 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%) Query: 1 MTKSELIERLATQQS----HIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYR 56 M + EL+ + I + VE + + A+ L +G + + G R Sbjct: 1 MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60 Query: 57 APRTGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 A R GRNP+TG+ + + + V FK GK+LR+ Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94 >UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YFH2_9BURK Length = 103 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 38/90 (42%), Positives = 52/90 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +S+LI +LA + + I K E AV+ + + MA+ L +G RIEIR FG R T Sbjct: 1 MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+K++ FK GKELR R Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSRM 90 >UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=Bacteroidales RepID=C7XFY9_9PORP Length = 98 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + EL++ L + + +P V V + +A + +GE I ++GFGSF ++ R Sbjct: 8 MNRGELVQSLVEE-TGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG++V + + FK G +L N Sbjct: 67 ARNPKTGEEVMITPRVSVKFKAGSDLLKELN 97 >UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 Tax=Proteobacteria RepID=A1WDL1_ACISJ Length = 91 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + +LI+ +A + + + ++ + + +A+G +++ GFG+F A RT Sbjct: 1 MNRQDLIDAIA-EDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG +++ + P F PG +D Sbjct: 60 GRNPKTGAPIKIPSTHKPKFTPGATFKDLV 89 >UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9H9_MAGSM Length = 109 Score = 92.1 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M LI+++A ++ ++ V + V+++L+ + L++ E + + FG F++ P Sbjct: 1 MDAKGLIQQIARKR-NLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWL 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GR+P+TG+ ++L GK VP FK ELR R N Sbjct: 60 GRHPQTGEMMKLPGKNVPFFKSDSELRKRLN 90 >UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBB5_TOLAT Length = 91 Score = 91.7 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +AT+ + ++A+ + + + L GE + I G G+FS+ +A R Sbjct: 1 MKKAELINAVATEM-NTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARL 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ VE+ K FK K L D N Sbjct: 60 GRNPQTGETVEIAAKKTVKFKAAKALADAVN 90 >UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEN1_RHOVA Length = 245 Score = 91.7 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+++L E + ++ +P + V+ +L+ + L +GE I++ FGSF L ++ R Sbjct: 20 LTRADLAEAV-FEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERV 78 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG+ V + + V FK ++DR N Sbjct: 79 GRNPKTGEIVPITPRRVIVFKASNIMKDRINA 110 >UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU3_9FIRM Length = 95 Score = 91.7 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K L + L+ Q ++ K AV + M+ LA ++I FG F + R R Sbjct: 5 VNKESLTQTLSIQL-NMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRM 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NP T +++ ++ +P F+P + L+++ N Sbjct: 64 GINPVTKERMMIQATKLPKFRPSQTLKNKCN 94 >UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGK9_KYTSD Length = 106 Score = 91.7 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L L V +++ M +A G + + GFG+F RAPRT Sbjct: 1 MNKADLARILEPIVGG--QGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRT 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 GRNP+TG+ V + G P F+P R Sbjct: 59 GRNPRTGEVVRIPGTAGPRFRPSPMFR 85 >UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YLD8_THEYD Length = 94 Score = 91.7 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++L+ + ++ +P + V+ + E M L + E ++I GFG F++ + R Sbjct: 1 MTKADLVNFI-FERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKT VE++ + V F+P ++L+ Sbjct: 60 GRNPKTMQIVEIKPRKVVTFRPSEQLKQSI 89 >UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellular organisms RepID=A5EU64_BRASB Length = 130 Score = 91.3 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 T +E+ E++A + + + V + + +A G + GFG F + R G Sbjct: 32 TANEIAEKIAAEN-DLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAREG 90 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP TG + + F P K ++D N Sbjct: 91 RNPSTGATIAIAASRKLTFTPAKAIKDSLN 120 >UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS Length = 116 Score = 91.3 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK E+++ +A+Q KT + V+E+++ +++ + +G IE+RGFG F R R Sbjct: 8 ITKKEIVDEIASQTGFTQVKT-KVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERR 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+ V + K P F+P K+L ++ N Sbjct: 67 TRNPKTGELVNIPAKVRPVFEPSKDLIEKIN 97 >UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=Alphaproteobacteria RepID=IHFA_BRUA1 Length = 107 Score = 91.3 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+++L E + ++ + V+ +L+ + + GE +++ F +F + + R Sbjct: 6 VTRADLAEAVY-RKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERI 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG++V + + V FK L+ R Sbjct: 65 GRNPKTGEEVPILPRRVMTFKASNVLKQRI 94 >UniRef50_Q1V1Q3 Integration host factor beta-subunit (IHF-beta) n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1V1Q3_PELUB Length = 96 Score = 91.3 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 51/89 (57%) Query: 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGR 62 KS+L+++LA + K +E +L + L +G+R+E+RGFG FS + + R R Sbjct: 5 KSKLLKQLANNYPNFLKKDLEKFTDIILTEIKQALKRGDRVELRGFGMFSTNIQKARISR 64 Query: 63 NPKTGDKVELEGKYVPHFKPGKELRDRAN 91 NPKTG+KV K HFK KE+ + N Sbjct: 65 NPKTGEKVNTPEKKTIHFKMSKEMFKKLN 93 >UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides RepID=C6IB23_9BACE Length = 96 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +LI +A + S++ + + V+ ++E +A L QGE + + GFG+F + R R Sbjct: 1 MKKIDLIRSIAVK-SNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 G N TG+ + + GK FKPG ++ Sbjct: 60 GYNLSTGEIMTIPGKKTVRFKPGAKM 85 >UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales RepID=A4X4D0_SALTO Length = 237 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K+ELIE LA + KT A+ +L + + + +GE++ I GFG+F R RT Sbjct: 18 VNKAELIETLAVRLG--DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGART 75 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ V+++ VP F+PG ++ Sbjct: 76 ARNPRTGEAVKVKKTSVPTFRPGTGFKEMV 105 >UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BW86_GRABC Length = 101 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++LI+++A + + TV+ V +E +++TL GE + I G G F + RA R Sbjct: 1 MNHADLIDKIA-KSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +E+ F+ GK L+D N Sbjct: 60 GRNPQTGATIEIAATRAARFRAGKALKDAVN 90 >UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W7Q9_KINRD Length = 179 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 2/90 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+E+++ L + K AV+ ++E + T+A+G+++ I GFG+F R RT Sbjct: 1 MNKAEMVDALEARLGG--RKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNART 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+ V+++ VP F+PG ++ Sbjct: 59 GRNPRTGEAVKIKKTSVPRFRPGTAFKEIV 88 >UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE87_9FIRM Length = 84 Score = 90.5 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+++ +A + +I K E V +++ + +L+ GE +++ GFG+F L + R Sbjct: 1 MIKTDVARSIAEKL-NIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERA 59 Query: 61 GRNPKTGDKVELEGKYVPHFKP 82 RNPKTG+ V++ + P F+ Sbjct: 60 ARNPKTGETVQVPATHYPTFRA 81 >UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q201_9BACT Length = 103 Score = 90.5 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 TK +L E++A + + V+ ++ L+ + L+QG RIE+R FG F + RA R Sbjct: 5 TKRDLCEKIARKTDN-THMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARKA 63 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ + K V FK GK +R++ Sbjct: 64 RNPRTGEVAFVPSKNVVVFKVGKLMREKV 92 >UniRef50_C6HZV1 Putative integration host factor, alpha subunit HimA like protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZV1_9BACT Length = 104 Score = 90.5 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 1 MTKSELIERLATQQSH--IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M +++++E +P K V +A+ ++E + +++ GE +++ GFG+F + R Sbjct: 1 MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKEL 86 R GRNPKTG+ + ++ V F+P + Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRPTRHF 88 >UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA Length = 88 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL + +A S + AV + E +A+ +++ I GFG+FS R R Sbjct: 1 MNKGELTKAVAA-ASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP T + +++ K FKP L+D Sbjct: 60 GRNPATKETIKIPEKTSLAFKPASALKD 87 >UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AA8F Length = 97 Score = 89.8 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK ELI +A +++ I VE A+ + T+A G+ I IRGFG+ S R + Sbjct: 1 MTKQELINTIA-ERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RN G V + VPHFKP K + + N Sbjct: 60 ARNITAGTSVVVPETIVPHFKPCKAFKGQVN 90 >UniRef50_A3EV93 Putative integration host factor, alpha subunit HimA like n=2 Tax=Leptospirillum sp. Group II RepID=A3EV93_9BACT Length = 98 Score = 89.8 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLAT--QQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M + ++++R+ + S AK V +LE +++TL GE ++I GFG+F + Sbjct: 1 MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRDR 89 R GRNPKTG+ V + + F P + L Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSLLKA 91 >UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWF3_VESOH Length = 109 Score = 89.8 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK ++ L I + + + TLA GE +++ FG+F + ++ R Sbjct: 3 ITKKDIANVLVKSM-DITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRV 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPKTG+ VE+ + V FK G +L+ G Sbjct: 62 GRNPKTGEMVEISARRVVVFKSGPKLKLATQKDG 95 >UniRef50_UPI0001699D1F integration host factor, beta subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699D1F Length = 122 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 43/67 (64%), Positives = 51/67 (76%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE + QSH+ + +E A+K M+E M+ L+ GERIEIRGFGSFSLHYR PR Sbjct: 1 MTKSELIEIVRKDQSHLAYRDIELAIKCMIEQMSQALSSGERIEIRGFGSFSLHYRPPRM 60 Query: 61 GRNPKTG 67 GRNPK G Sbjct: 61 GRNPKNG 67 >UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9J7_9PORP Length = 90 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++ I+ +A ++ + K + + ++E + + +GER+ + GFGSF + RA R Sbjct: 1 MNKTDFIKTVA-DKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 G NP++G ++++ FKP L Sbjct: 60 GINPRSGKTIDIKASKSIKFKPSTAL 85 >UniRef50_B6BR84 Integration host factor beta-subunit n=3 Tax=root RepID=B6BR84_9RICK Length = 97 Score = 89.4 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 52/89 (58%) Query: 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGR 62 KS+L+++L+ + K +E +L + + L +G+R+E+RGFG FS + + R R Sbjct: 5 KSKLLKQLSDNYPNFLKKDLEKFTNIILGEIKNALKRGDRVELRGFGVFSTNIQKARISR 64 Query: 63 NPKTGDKVELEGKYVPHFKPGKELRDRAN 91 NPKTG+KV K HFK K+L + N Sbjct: 65 NPKTGEKVNTPQKKTIHFKMSKDLFKKLN 93 >UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q602W2_METCA Length = 95 Score = 89.0 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSH-IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPR 59 M +S+LI + + + ++ + + LA G+ + I G ++ RA R Sbjct: 1 MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 TGRNP+TG+ VE+ K V K L++R Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERV 91 >UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S3Z3_OSTLU Length = 115 Score = 89.0 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K+ LI+ +A + +V + L+ +++T+ G+++ + FG+F+ R R Sbjct: 23 LNKTTLIDHVAKETGE-TKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARD 81 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP TG +++ P F +D Sbjct: 82 GRNPLTGAALKIPAANYPSFSASSTFKDLV 111 >UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=DBH_STRGN Length = 91 Score = 89.0 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 K +LI ++A + + K AV + + L++GE++++ GFG+F + RA R G Sbjct: 3 NKQDLIAKVAA-ATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG + ++ VP FK GK L+D Sbjct: 62 RNPQTGKETKIAASKVPAFKAGKALKDAV 90 >UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI67_DESAH Length = 108 Score = 88.6 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+E+ ER + I T D +++ LE + TL QGE + I GFG F ++ + R Sbjct: 3 LTKTEITERF-QKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARK 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP T +++ L + V FK +LR+ N Sbjct: 62 GRNPATSEEMILPARRVITFKCSGKLRNLIN 92 >UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZA3_PELTS Length = 92 Score = 88.6 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K + +E + ++ + A+ + E + A + +RGFG+F + R+PR Sbjct: 1 MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GR+ +TG + + K V FKPGK LR Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAV 90 >UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WST8_9DELT Length = 97 Score = 88.6 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 1 MTKSELIERLATQQS-----HIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHY 55 MTK +L+ + + + VE ++ + + A L G + + G G Sbjct: 1 MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60 Query: 56 RAPRTGRNPKTGDKVELEGKYVPHFKPGKEL 86 RA R GRNP+TG+ V + + V F P ++L Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKL 91 >UniRef50_B7JAF9 Integration host factor, alpha subunit, putative n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7JAF9_ACIF2 Length = 107 Score = 88.6 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK ++ L + E V EHM + + +++ GFG F++ ++ R Sbjct: 3 ITKKDVANHL-WEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG E++ + V F LR ++N Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAKSN 92 >UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus lactis RepID=Q02VJ4_LACLS Length = 103 Score = 88.2 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 6/96 (6%) Query: 1 MTKSELIERLATQQSHIPAK------TVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLH 54 + K EL + ++ + +I K + V + + L Q +I++ FG+F Sbjct: 2 VNKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKK 61 Query: 55 YRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RA R G NP+ G+++++ K VP FK GK L++ Sbjct: 62 TRASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97 >UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=A0LVA1_ACIC1 Length = 163 Score = 88.2 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A + KT +AV+ +++ + T+A+GE++ I GFG F RA R Sbjct: 1 MNKAELITAVAARIG--DKKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARM 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP TG++V ++ VP F+ G L+ Sbjct: 59 ARNPATGERVRVKKTSVPKFRAGTRLKGVV 88 >UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AIP7_9PORP Length = 91 Score = 88.2 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +S+LI LA Q++ + K V+ + EM + + + +G+RI + GFGSF +++ R Sbjct: 1 MNRSQLINILA-QKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RN K G V+L + + HFK L ++ N Sbjct: 60 ARNLKNGTAVQLSPRTIIHFKCAPHLLEQMN 90 >UniRef50_Q57267 DNA-binding protein HU n=41 Tax=Borrelia RepID=DBH_BORBU Length = 108 Score = 87.8 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 5/95 (5%) Query: 1 MTKSELIERLA----TQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYR 56 +TKS+++++++ + K + + E + S L IE R FG+F + R Sbjct: 9 VTKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 57 APR-TGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 R RNP+TG+ V++ +V +F+PGK+L++R Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103 >UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ83_PELPD Length = 126 Score = 87.8 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ ++A + + + E + + + L G+++ I GFG+FS R RT Sbjct: 1 MNKTELVAKIA-EGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP+TG +++ K F PGK L+D Sbjct: 60 GRNPQTGKALQIAEKTNGKFTPGKALKD 87 >UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BF96_9PORP Length = 99 Score = 87.8 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+E++ R+A Q + + V + V+ +E + + +G + +RGFGSF + +RA + Sbjct: 1 MTKAEIVARIAKQ-TGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RN + + +P FKP K D N Sbjct: 60 ARNISQNTTIVIPAHSIPAFKPSKAFADMVN 90 >UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella RepID=A1S612_SHEAM Length = 91 Score = 87.8 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ L + +A + + + ++++L + L +GE + + FG+F L Y PR Sbjct: 1 MNKATLTKFIA-NTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNPKTG+ +E+ G P FKP L+ Sbjct: 60 VRNPKTGELMEVAGFNQPSFKPAPALKQLI 89 >UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales RepID=A6L5T8_BACV8 Length = 94 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+EL ++++ + + A+T+ V+ ++ + +L +GE + +RGFGSF + RA +T Sbjct: 1 MTKAELCKKISAK-TGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RN + + +P FKP KEL N Sbjct: 60 TRNISKNTTIIIPAHNIPAFKPSKELVKLVN 90 >UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=A5VG36_SPHWW Length = 92 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M S+L + LA + AV + +A A+GE + + GFG F + R Sbjct: 2 MNNSDLADHLAG-ATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLARE 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG+ +++ F K ++DR N Sbjct: 61 GRNPATGETIKIAASKKLSFSVAKAVKDRLN 91 >UniRef50_B7J8S4 DNA-binding protein HU family protein n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J8S4_ACIF2 Length = 91 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 45/83 (54%) Query: 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGR 62 K +L + L + ED V+ ++E + +++G ++ I FG+F +RA R GR Sbjct: 7 KKDLAKSLVDAGLAPTVRKAEDIVQHLVESIVELVSEGHKVRIHQFGTFQQIHRAARMGR 66 Query: 63 NPKTGDKVELEGKYVPHFKPGKE 85 NP+TG ++E+ + V FK K Sbjct: 67 NPQTGGELEIPERKVLTFKASKS 89 >UniRef50_A8PMN2 Integration host factor subunit alpha (IHF-alpha) n=1 Tax=Rickettsiella grylli RepID=A8PMN2_9COXI Length = 102 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 40/83 (48%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++LI L Q+S + V E + L QGE ++I G G F + R Sbjct: 4 LTKADLIHSLRQQESSLSRLVANKLVDAFFEQIMFALEQGESVKISGLGRFRRRLKKERP 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPG 83 GRNP+TG ++ + V F+ Sbjct: 64 GRNPQTGVTTQVSSRNVVLFQAS 86 >UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYJ3_9DELT Length = 97 Score = 87.1 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L + + ++ ++ D V + + + +TL E I++ FG+F++ ++PR Sbjct: 6 LTRKDLAKAI-NEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQ 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+TGD +E+ + + F+P K +R+R N Sbjct: 65 GRNPRTGDPMEISKRSMISFRPSKSVRERINR 96 >UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobacteria RepID=A6Q378_NITSB Length = 91 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+E ++ +A +++ + K + + LE + L G+ + GFG+F+ RA R Sbjct: 1 MKKAEFVQIVA-EKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 + P T V++ V FK GK+L++ Sbjct: 60 AKVPGTDRVVKVPATRVVKFKVGKKLKEAV 89 >UniRef50_C8X523 Histone family protein DNA-binding protein n=2 Tax=Desulfovibrionales RepID=C8X523_DESRD Length = 98 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+++++ + Q V++ V++ML+ M ++ + + I GFG F + + PR Sbjct: 6 LTKADIVDAIYEQ-GQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRK 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+T + + L G+ V F+ + R N Sbjct: 65 GRNPQTEEAITLPGRTVVVFRLSRRFRAELN 95 >UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium RepID=C3WAE9_FUSMR Length = 106 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 43/91 (47%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E +E + E K LE + L +G+ + GFG F RA RT Sbjct: 1 MTKKEFVELFGAKAELKTKVEAEKLTKAFLETLEEVLVKGDSVAFIGFGKFEAAKRAERT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 NP+T +++ + V FKPGK L ++ N Sbjct: 61 CINPQTKKPMKIAARKVAKFKPGKNLLEKMN 91 >UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 Tax=Fusobacteriaceae RepID=C7N8X2_LEPBD Length = 93 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M+K E ++ A + + K E+ V + L+ + +L +G+ ++ G+G+F + RA RT Sbjct: 1 MSKKEFVDAYA-KATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAART 59 Query: 61 GRNPKTGDKVELEG 74 G NP+T +++++ Sbjct: 60 GINPQTKEEIQIPE 73 >UniRef50_B5JEX1 DNA-binding protein HU n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JEX1_9BACT Length = 104 Score = 86.3 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +++ R+ + IP ++D V+ L+ + LA+G +E+R FG F + R R Sbjct: 5 LTKRDIVLRIFEKTKDIPQSKIQDTVQMTLDIILDALAEGRNVELRNFGVFEVQKRKARV 64 Query: 61 GRNPKTGDK-VELEGKYVPHFKPGKELRDRA 90 GRNP + V + + V FK GK L+ + Sbjct: 65 GRNPNRPETDVVIPTRAVVKFKAGKVLKAKI 95 >UniRef50_C6JJT3 Predicted protein n=4 Tax=Fusobacterium RepID=C6JJT3_FUSVA Length = 111 Score = 86.3 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 44/91 (48%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E +E T+ + K ++ + L +GE + GFG F RA RT Sbjct: 6 MTKKEFVELFGTKAGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAART 65 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 NP+T +++E K V F+ GK L ++ N Sbjct: 66 CVNPQTKKPMKVEAKKVAKFRAGKNLLEKMN 96 >UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepID=Q2SRR9_MYCCT Length = 90 Score = 86.3 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK ELIE +I E V + + ++ L +G+ + + GFG F + R+ R Sbjct: 1 MTKKELIEE-IIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSRE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 G NP TG+K+ + FKP K+L++ Sbjct: 60 GVNPSTGEKIIIPASRSARFKPAKQLKESL 89 >UniRef50_Q98RC2 DNA-BINDING PROTEIN HU n=2 Tax=Mycoplasma RepID=Q98RC2_MYCPU Length = 126 Score = 86.3 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E +++++ + S I + VE + M+ + +L E++ I G+F +A R Sbjct: 36 MTKKEFMQKIS-EHSFISQRDVEAIINSMVFVIKESLISEEKVTIPMLGTFETKIKAARE 94 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G TG+K+ + K V FKP K +++ N Sbjct: 95 GIKFTTGEKILIPEKRVVKFKPTKYIKEVVN 125 >UniRef50_C7LTK6 Histone family protein DNA-binding protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTK6_DESBD Length = 109 Score = 85.9 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 27 KEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKEL 86 K + LA+G+ I + G GSFS+ A R GRNP+TG+ + + + HFK K L Sbjct: 44 KAFYAVIREALAKGQGISLPGLGSFSVMLHAARMGRNPRTGETIAIPARRRIHFKTCKGL 103 Query: 87 RDRAN 91 R+ N Sbjct: 104 RELLN 108 >UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 Tax=cellular organisms RepID=Q4ZXI2_PSEU2 Length = 93 Score = 85.9 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +LI +A + P T A++++ +A L +G I + G + R RT Sbjct: 3 LTKDQLIADIA-EAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPART 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG +E+ K V F P K L D N Sbjct: 62 GRNPSTGAAIEIAAKKVIKFVPAKVLTDSIN 92 >UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKW1_METNO Length = 90 Score = 85.9 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +L++ +A + + + + + +L G+ + + G G + R Sbjct: 1 MNKPDLLKAIAAK-AGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NP+TG +++ + VP + L D N Sbjct: 60 GHNPRTGQPLQIPARLVPKLRASTTLHDALN 90 >UniRef50_D0RRC9 Integration host factor subunit beta (IHF-beta) n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRC9_9RICK Length = 103 Score = 85.9 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 51/91 (56%) Query: 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGR 62 KS++++ L IP VE ++ + +++++ L++G IEIRG G+F + R R Sbjct: 8 KSDIVKDLQGHFQKIPNNNVEHIIESIFKYLSNALSEGRNIEIRGLGTFKVKKMPARNAR 67 Query: 63 NPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 NPKTG+ +++E K +K K L R N Sbjct: 68 NPKTGETIQIEEKNKVKWKSSKLLNYRINKD 98 >UniRef50_B3DWZ9 Bacterial nucleoid DNA-binding protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWZ9_METI4 Length = 109 Score = 85.5 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 2/93 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+ +L+ +++T+ + +P + V +E+L+ + E IE+R FG F + R R Sbjct: 1 MTRRDLVVKVSTK-TGLPQQEVAKIFEEILDVFMEVFKKKETIELRNFGVFEVTLRKARI 59 Query: 61 GRNPKTGDK-VELEGKYVPHFKPGKELRDRANI 92 GRNP+ +K + + + V FKPGKE++ N Sbjct: 60 GRNPRNPEKDILIPPRAVIRFKPGKEVKGILNA 92 >UniRef50_B4U6N1 Histone family protein DNA-binding protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6N1_HYDS0 Length = 102 Score = 85.5 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 6/97 (6%) Query: 1 MTKSELIERL----ATQQSHIPAKTVEDAVKEMLEHMASTL--AQGERIEIRGFGSFSLH 54 M K +L++++ Q + + + V + L + + + +I++ GFG+F + Sbjct: 1 MRKKDLLDQVMIKLQKQNTKLKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIK 60 Query: 55 YRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 R PR GRNPKTGD ++ +Y FKP + + N Sbjct: 61 ERKPRIGRNPKTGDLYKIPPRYNLTFKPSQNFVLQVN 97 >UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XF17_LIBAP Length = 114 Score = 85.5 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+S+L++ ++ + + K V + + + +GE I+I F +F + + R Sbjct: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRN +T +V+++ + V FK L+ R Sbjct: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 >UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidales RepID=A6LHR2_PARD8 Length = 95 Score = 85.5 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + EL++ LA + S + V+ E L + + GFG+ S + R Sbjct: 1 MNRRELVKTLADKLS-VTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPK G + + FKPGK L + N Sbjct: 60 GRNPKNGVAYMIRARKSVKFKPGKLLLKQLNA 91 >UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae RepID=C9M6K0_9BACT Length = 131 Score = 85.5 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+EL+E + + + + AV ++ ++ L+QG ++++ GFG+F + R+ RT Sbjct: 21 VTKTELVEFV-RENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSART 79 Query: 61 GRNPKTGDK-VELEGKYVPHFKPGKELRDRAN 91 GRNP+ K V + K VP FK GK LR + Sbjct: 80 GRNPQDPTKTVHIPAKKVPVFKAGKLLRSAVD 111 >UniRef50_C8PNN7 DNA-binding protein, HU family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNN7_9SPIO Length = 112 Score = 85.1 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 TK+ +++ + + H+ K + M L +GE IEIRGFG+FS+ +R R G Sbjct: 11 TKTSIVDAIYKKSDHM-LKDIHSVSDLFFAEMFQALERGETIEIRGFGTFSVQFRKGRKG 69 Query: 62 -RNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNPKTG+ V+ V F+PGK L Sbjct: 70 MRNPKTGELVDTADHSVVVFRPGKILSAAV 99 >UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMR7_AKKM8 Length = 101 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +L+ +++ + ++ V D V+ ++ ++STLA+G+R+ IR FG+F + P+ Sbjct: 5 LTKRDLVNKISAE-TNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVKPKV 63 Query: 61 GRNPKT-GDKVELEGKYVPHFKPGKELRDRA 90 GRNPK V + + V FK GKEL+D+ Sbjct: 64 GRNPKNPDQDVPIPARSVVKFKVGKELKDQV 94 >UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NU55_BACSE Length = 101 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL++ +A + + + K + ++ + + + ++ + GFG+F + + R Sbjct: 1 MNKKELVDAIAEE-TGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARR 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 G NP T +E+ K V +F+P L Sbjct: 60 GMNPSTFVPIEIPAKRVVYFRPSAYL 85 >UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=Alphaproteobacteria RepID=IHFA_AGRT5 Length = 112 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+++L E + ++ + + V+ +++ + + + +GE +++ F +F + + R Sbjct: 6 VTRADLAESV-FRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERI 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG++V + + V FK L+ R Sbjct: 65 GRNPKTGEEVPISPRRVMTFKASNVLKQRI 94 >UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus Pelagibacter RepID=Q4FLU7_PELUB Length = 102 Score = 85.1 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +LI + Q E+ + + L + L +++++ FG+FS+ + R Sbjct: 8 LTKKDLINSIYMQI-GFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRI 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKT ++ + + V FK KE +D N Sbjct: 67 GRNPKTKEQTTISNRDVVLFKASKEFKDLVN 97 >UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZC9_HYPNA Length = 91 Score = 85.1 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T L L+ +P K E V + ++ M L +G+++ I G G + R Sbjct: 2 LTLKHLAAELSEAH-EMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARK 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP TG++++++ F+P K+L++R Sbjct: 61 GRNPATGEEIKIKASKKVAFRPSKDLKERV 90 >UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaproteobacteria RepID=B9K3N0_AGRVS Length = 92 Score = 85.1 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 T +E+ +++A +Q ++P + V+ + + + G I FG F L R G Sbjct: 3 TTNEIADKIAAEQ-NLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREG 61 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP TG +++ F PGK ++D N Sbjct: 62 RNPATGATIKIAASKKLTFTPGKAVKDALN 91 >UniRef50_B9XSG3 Histone family protein DNA-binding protein n=4 Tax=Chlamydiae/Verrucomicrobia group RepID=B9XSG3_9BACT Length = 119 Score = 84.4 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK +L+ R++ + + + ++ K L+++A L++G+++E+R FG F + R R Sbjct: 3 MTKRDLVIRISNETGLVQQQVLDVVQKT-LDYIAEALSKGDKVELRNFGVFEVKVRKARI 61 Query: 61 GRNPKTGDK-VELEGKYVPHFKPGKELRDRA 90 GRNP V + + V FKPGKE+R Sbjct: 62 GRNPNAPATDVPIPQRSVVKFKPGKEMRAEV 92 >UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EV14_9RHOB Length = 94 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + S LI +A + S + V+ + + E + G I G G F RA R Sbjct: 4 LNYSGLIRAIAEETSQ-SQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERAARK 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP TG ++E+ FKP K +DR N Sbjct: 63 GRNPSTGVEIEIAASSSLSFKPAKAAKDRLNA 94 >UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 Tax=Desulfovibrionales RepID=B8DRW9_DESVM Length = 97 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+E+++ + +++ V+ V+ +L M + + + I GFG F + + R Sbjct: 6 LTKAEIVDAIY-EKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARK 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+T + + L + V F+ ++ R N Sbjct: 65 GRNPQTDETITLPPRKVVVFRLSRKFRAELN 95 >UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JSK6_RHOER Length = 183 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI+ L T++ +T DAV+ +++ + + +GE + I GFG F RA R Sbjct: 1 MNKAELIDVL-TEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 RNP+TG+ V+++ VP F+PG + + Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFK 86 >UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XGD8_DESMR Length = 100 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+++++ + +++ V+ V +LE M ++ + + + GFG F + + R Sbjct: 6 LTKADIVDYIY-EKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKARK 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+T + L + V F+ ++ R N Sbjct: 65 GRNPQTNASIMLPPRKVVVFRLSRKFRAELN 95 >UniRef50_UPI0001BC59DB DNA-binding protein HU n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC59DB Length = 94 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 43/90 (47%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+ E + L + ++ + + + + + IR FG L RAPR Sbjct: 1 MTRREFAKVLFQHGIFSSKLEADRNIEIIFQLIEKAIIEDGFFSIRHFGKIKLVERAPRM 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG+++ ++ + F+P + L +R Sbjct: 61 GRNPKTGEEINIDARKSIKFRPSRFLLERL 90 >UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae RepID=C6X423_FLAB3 Length = 96 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLA-QGERIEIRGFGSFSLHYRAPR 59 M KSELI+ +A + I + A++ + ++ +TL+ + ++ + GFG+FS+ RA R Sbjct: 1 MNKSELIDAMAND-AGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAAR 59 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKEL 86 G NP T +++ K V FK G +L Sbjct: 60 QGINPATKKPIKIAAKTVAKFKAGADL 86 >UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 Tax=cellular organisms RepID=B9LTH2_HALLT Length = 206 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%) Query: 16 HIPAKTVEDAVKEMLEHMASTLAQGERIEI-------RGFGSFSLHYRAPRTGRNPKTGD 68 + + A++ + L +G+R+ + +GFG+FS+ R+ RTGRNP+TG Sbjct: 124 GLSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNPQTGK 183 Query: 69 KVELEGKYVPHFKPGKELRDRA 90 ++++ K V FK G EL Sbjct: 184 EIQIAAKNVVKFKAGAELSKAV 205 Score = 75.1 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE +A++ S + + A+ + L +G+ + GFGSFS+ R+ RT Sbjct: 1 MNKAELIESMASE-SGLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSART 59 Query: 61 GRNPKT 66 GRNP + Sbjct: 60 GRNPSS 65 >UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytoplasma RepID=Q2NIZ7_AYWBP Length = 106 Score = 84.0 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGE---RIEIRGFGSFSLHYRA 57 M K + + +LA +++ I K + +E + T + E ++ + GFG+F YR Sbjct: 1 MNKLKFLRKLA-EKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRN 59 Query: 58 PRTGRNPKTGDKVELEGKYVPHFKPGKELR 87 R G+NP+TG + + K VP FK K L+ Sbjct: 60 AREGKNPRTGKTIYIPAKKVPTFKFSKLLK 89 >UniRef50_O67923 Integration host factor beta subunit n=2 Tax=Aquificaceae RepID=O67923_AQUAE Length = 100 Score = 84.0 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKS++ + LA + I K V E + + + GE++E+RG G+F L + R Sbjct: 1 MTKSDIAKELARRH-GISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRF 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 +NPKTG ++ ++ +YVP++K K LR + N Sbjct: 60 VKNPKTGIEIYVKERYVPYYKMSKLLRKKLN 90 >UniRef50_B3DZP2 Bacterial nucleoid DNA-binding protein n=2 Tax=Verrucomicrobia RepID=B3DZP2_METI4 Length = 99 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 2 TKSELIERLATQQSH-IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 K+ L+E + E +V ++ + + + + +++ GFG+F + R R Sbjct: 10 NKASLVEVVQKNMGKDTTKALAEKSVDAVINGLKTGVLKNGIVQLIGFGTFRVITRKARM 69 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 G NPKTG+K++++ F PGKEL+++ Sbjct: 70 GVNPKTGEKIKIKASKTVRFSPGKELKEKL 99 >UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B569_METEA Length = 140 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT +EL LA + + ++ V+ L +A LA GE ++++GFG F + R R Sbjct: 45 MTLAELESVLAGRL-GLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARR 103 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 ++P+ G ++E+ + F+P + LR+ N Sbjct: 104 RKDPRDGRELEVPARRGAVFRPSRLLREALNR 135 >UniRef50_C6IN85 DNA-binding protein HU n=2 Tax=Bacteroides RepID=C6IN85_9BACE Length = 95 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+++I R++ + I +TV ++ ++ + L + + +RGFG+FSL RA + Sbjct: 1 MTKADIINRVSEEL-GIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 +N + + + + +PHFKP + Sbjct: 60 AQNIQQHTTICIPARKIPHFKPSESF 85 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel... 124 7e-28 UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr... 124 1e-27 UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al... 123 2e-27 UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba... 121 7e-27 UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr... 119 3e-26 UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID... 118 5e-26 UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr... 118 6e-26 UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr... 117 1e-25 UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce... 116 2e-25 UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al... 116 2e-25 UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par... 115 4e-25 UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID... 115 4e-25 UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr... 115 6e-25 UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr... 115 6e-25 UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr... 113 2e-24 UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi... 113 2e-24 UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga... 113 2e-24 UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B... 113 2e-24 UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri... 112 3e-24 UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr... 112 5e-24 UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr... 112 5e-24 UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH... 111 6e-24 UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al... 111 6e-24 UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep... 111 6e-24 UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G... 111 7e-24 UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT 110 1e-23 UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A... 110 1e-23 UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa... 110 1e-23 UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ... 110 2e-23 UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D... 110 2e-23 UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie... 109 3e-23 UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr... 109 4e-23 UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH 109 4e-23 UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding p... 108 5e-23 UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ... 108 6e-23 UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re... 108 7e-23 UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T... 107 1e-22 UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter... 107 1e-22 UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc... 107 1e-22 UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D... 107 1e-22 UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T... 107 2e-22 UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact... 107 2e-22 UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T... 106 3e-22 UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr... 106 3e-22 UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete... 105 3e-22 UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P... 105 4e-22 UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ... 105 4e-22 UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ... 105 5e-22 UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia... 105 6e-22 UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T... 104 7e-22 UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T... 104 9e-22 UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D... 104 1e-21 UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti... 104 1e-21 UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l... 104 1e-21 UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R... 104 1e-21 UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ... 103 2e-21 UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 T... 103 2e-21 UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 T... 103 2e-21 UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re... 102 3e-21 UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R... 102 3e-21 UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube... 102 3e-21 UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba... 102 3e-21 UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=... 102 3e-21 UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ... 102 3e-21 UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ... 102 4e-21 UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T... 102 4e-21 UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a... 102 4e-21 UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T... 102 4e-21 UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T... 102 4e-21 UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale... 102 5e-21 UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D... 101 6e-21 UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba... 101 6e-21 UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios... 101 6e-21 UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 T... 101 7e-21 UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ... 101 9e-21 UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C... 101 9e-21 UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re... 100 1e-20 UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil... 100 2e-20 UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T... 99 3e-20 UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu... 99 3e-20 UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 T... 99 3e-20 UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha... 99 4e-20 UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R... 99 4e-20 UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo... 99 5e-20 UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=P... 99 5e-20 UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p... 98 8e-20 UniRef50_Q6ANC3 Related to integration host factor, alpha subuni... 98 9e-20 UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G... 98 9e-20 UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID... 98 9e-20 UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 T... 98 9e-20 UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria... 97 1e-19 UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopi... 97 1e-19 UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI... 97 1e-19 UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabac... 97 1e-19 UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH 97 1e-19 UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso... 97 1e-19 UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ... 97 1e-19 UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T... 97 1e-19 UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto... 97 2e-19 UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin... 97 2e-19 UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T... 97 2e-19 UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteob... 97 2e-19 UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T... 97 2e-19 UniRef50_A0L712 Histone family protein DNA-binding protein n=5 T... 97 2e-19 UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga... 97 2e-19 UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ... 97 2e-19 UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T... 96 3e-19 UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand... 96 3e-19 UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 96 3e-19 UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B... 96 4e-19 UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A... 96 4e-19 UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter... 96 4e-19 UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T... 96 4e-19 UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla... 96 5e-19 UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi... 95 5e-19 UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A... 95 6e-19 UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T... 95 6e-19 UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T... 95 6e-19 UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Des... 95 7e-19 UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ... 95 7e-19 UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=ro... 95 7e-19 UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr... 95 8e-19 UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 ... 95 8e-19 UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 T... 95 8e-19 UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G... 95 9e-19 UniRef50_C9LHL9 Putative integration host factor IHF alpha subun... 94 9e-19 UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bactero... 94 1e-18 UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0... 94 1e-18 UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ... 94 1e-18 UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctom... 94 1e-18 UniRef50_B8II37 Histone family protein DNA-binding protein n=1 T... 94 1e-18 UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A... 94 1e-18 UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T... 94 2e-18 UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D... 94 2e-18 UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr... 94 2e-18 UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 T... 94 2e-18 UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein... 94 2e-18 UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=K... 94 2e-18 UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ... 93 2e-18 UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bactero... 93 2e-18 UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T... 93 2e-18 UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T... 93 2e-18 UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T... 93 2e-18 UniRef50_B1A4K2 Integration host factor subunit A-like protein n... 93 2e-18 UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta... 93 3e-18 UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellul... 93 3e-18 UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidale... 93 3e-18 UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone... 92 3e-18 UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ... 92 3e-18 UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T... 92 4e-18 UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T... 92 4e-18 UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabac... 92 4e-18 UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfo... 92 5e-18 UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=B... 92 6e-18 UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T... 92 6e-18 UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bactero... 92 6e-18 UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R... 92 6e-18 UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace... 92 6e-18 UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph... 92 7e-18 UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D... 92 7e-18 UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria... 92 7e-18 UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 T... 92 7e-18 UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 91 8e-18 UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th... 91 1e-17 UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 ... 91 1e-17 UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T... 91 1e-17 UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=... 91 1e-17 UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacte... 91 1e-17 UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria Re... 91 1e-17 UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell... 91 1e-17 UniRef50_A8PM48 Integration host factor, beta subunit n=1 Tax=Ri... 91 2e-17 UniRef50_A3ER44 Putative integration host factor, beta-subunit n... 91 2e-17 UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II... 90 2e-17 UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T... 90 2e-17 UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium Re... 90 2e-17 UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=R... 90 2e-17 UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylo... 90 2e-17 UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_... 90 2e-17 UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T... 90 2e-17 UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Ta... 90 3e-17 UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Cur... 90 3e-17 UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ... 89 3e-17 UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 T... 89 3e-17 UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T... 89 3e-17 UniRef50_B7JAF9 Integration host factor, alpha subunit, putative... 89 4e-17 UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen... 89 5e-17 UniRef50_C8X523 Histone family protein DNA-binding protein n=2 T... 89 5e-17 UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=... 89 5e-17 UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T... 89 5e-17 UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi... 89 5e-17 UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=... 89 6e-17 UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium... 89 6e-17 UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide... 88 7e-17 UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus... 88 8e-17 UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet... 88 9e-17 UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=A... 88 9e-17 UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabac... 88 9e-17 UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobact... 88 9e-17 UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ... 88 9e-17 UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1... 87 1e-16 UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bactero... 87 1e-16 UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Ta... 87 1e-16 UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida... 87 1e-16 UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T... 87 2e-16 UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 T... 87 2e-16 UniRef50_C6HZV1 Putative integration host factor, alpha subunit ... 87 2e-16 UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacterida... 87 2e-16 UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria Re... 87 2e-16 UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 T... 87 2e-16 UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bactero... 87 2e-16 UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s... 87 2e-16 UniRef50_A6L5E9 Putative integration host factor IHF alpha subun... 87 2e-16 UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax... 86 2e-16 UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 T... 86 3e-16 UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 ... 86 3e-16 UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S... 86 4e-16 UniRef50_A7HII4 Histone family protein DNA-binding protein n=4 T... 86 4e-16 UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales Rep... 86 4e-16 UniRef50_A5CZB4 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 86 4e-16 UniRef50_A8PMN2 Integration host factor subunit alpha (IHF-alpha... 86 4e-16 UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria... 86 4e-16 UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaprote... 86 4e-16 UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bactero... 86 5e-16 UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Ca... 85 6e-16 UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomy... 85 6e-16 UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidu... 85 6e-16 UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteri... 85 6e-16 UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabac... 85 7e-16 UniRef50_UPI0001699D1F integration host factor, beta subunit n=1... 85 7e-16 UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri... 85 7e-16 UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=... 85 7e-16 UniRef50_C6XFR8 Integration host factor, beta subunit n=1 Tax=Ca... 85 7e-16 UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium Rep... 85 7e-16 UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 ... 85 7e-16 UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 ... 85 8e-16 UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2... 85 8e-16 UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T... 85 8e-16 UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococc... 85 9e-16 UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. S... 85 9e-16 UniRef50_A3EV93 Putative integration host factor, alpha subunit ... 84 1e-15 UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 ... 84 1e-15 UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=M... 84 1e-15 UniRef50_C9MQK2 Putative integration host factor IHF alpha subun... 84 1e-15 UniRef50_Q1V1Q3 Integration host factor beta-subunit (IHF-beta) ... 84 1e-15 UniRef50_D1XWL2 DNA-binding protein HU n=1 Tax=Prevotella bivia ... 84 1e-15 UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus... 84 1e-15 UniRef50_C6JJT3 Predicted protein n=4 Tax=Fusobacterium RepID=C6... 84 1e-15 UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 T... 84 1e-15 UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 ... 84 1e-15 UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=M... 84 2e-15 Sequences not found previously or not previously below threshold: >UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms RepID=IHFB_HALHL Length = 102 Score = 124 bits (313), Expect = 7e-28, Method: Composition-based stats. Identities = 66/91 (72%), Positives = 76/91 (83%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE +A++Q H+ K VEDAVK+MLEHM+ TLA G+RIEIRGFGSFSLH+R R Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ V L KYVPHFKPGKELR+R N Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERVN 91 >UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria RepID=IHFB_BORPD Length = 119 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 55/94 (58%), Positives = 69/94 (73%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI LA + + A+ + AVK ML+ M LA G+RIEIRGFGSFSL R+PR Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPK+G++V + GK VPHFK GKELR+R ++ G Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVDLAG 94 >UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria RepID=IHFB_OLICO Length = 106 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 47/94 (50%), Positives = 67/94 (71%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++R+A H+ + VE+ V +LE + S LA+G+R+E+RGFG+FS+ +R R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNP+TG+ V +E K VP FK GKE+R+R N G Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRDG 94 >UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria RepID=IHFB_THISH Length = 96 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 66/92 (71%), Positives = 75/92 (81%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE LA +QSH+ K VE +VK MLEH++ LA G+RIEIRGFGSFSLH+R PR Sbjct: 1 MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG+ V L GKYVPHFKPGKELR+R N Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERVNA 92 >UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria RepID=Q1D6M8_MYXXD Length = 127 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 43/92 (46%), Positives = 58/92 (63%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+SELIER+ + +H+P + VE V + E M+ L G RIE+RGFG F + R RT Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG +V + + F GK+LR+R N Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERLNA 92 >UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD Length = 90 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI +A Q + + K AV + E + L +G ++++ GFGSF + R+ R Sbjct: 1 MNKTDLINAVAEQ-AELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+++E+ P FKPGK+L+D N Sbjct: 60 GRNPQTGEEIEIPATKNPAFKPGKQLKDAVN 90 >UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria RepID=IHFB_RALEJ Length = 137 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 49/93 (52%), Positives = 66/93 (70%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSEL+E+LA + + + + +VK +L+ M+ LA G RIEIRGFGSF L+ R PR Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPK+G++V + K VPHFK GKELR+R + Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVDRN 93 >UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria RepID=IHFB_PSEPK Length = 100 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 67/93 (72%), Positives = 74/93 (79%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIER+ T Q + +K VE A+K MLE M+ LA G+RIEIRGFGSFSLHYRAPR Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPKTG V LEGK+VPHFKPGKELRDR N Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVNED 93 >UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms RepID=IHFB_CAUCN Length = 96 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 49/94 (52%), Positives = 61/94 (64%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI RLA + H+ K VE V +LE M L G R+E+RGFG+ S+ R RT Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNP+TG+ V++ K+VP FK GKELR R N G Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLNADG 94 >UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria RepID=IHFB_SINMW Length = 103 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 64/91 (70%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ +A + H+ + VE+ V +L+ + LA G R+E+RGFG+FS+ R R+ Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TGD V +E K+VP FK GKELR+R N Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLN 91 >UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQA5_9PROT Length = 113 Score = 115 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 48/93 (51%), Positives = 69/93 (74%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL+++LA + H+ K VE V + +H+++ L QG+R+E+RGFG+FS+ YR RT Sbjct: 1 MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+TG+ VE+E K+VP FK GKE+R+R N Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERLNKK 93 >UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU Length = 92 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A + S + K AV + + + L G++I++ GFG+F + R+ R Sbjct: 1 MNKTELINAVA-EASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++E+ VP FKPGK L+D Sbjct: 60 GRNPQTGEEIEIPASKVPAFKPGKALKDAV 89 >UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria RepID=IHFB_PARL1 Length = 110 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 64/91 (70%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL+ RLA H+ + VE V + + +++ LA+G+R+E+RGFG+FS+ R RT Sbjct: 1 MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ V ++ K VP FK GKELR+R N Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERLN 91 >UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria RepID=IHFB_HERAR Length = 101 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 55/92 (59%), Positives = 69/92 (75%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI RLA + + AK + AVK +L+ M+ LA G+RIEIRGFGSF+L+ R PR Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPK+GDKV + K VPHFKPGK+LR+R + Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERVDA 92 >UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria RepID=IHFB_BURTA Length = 107 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 51/94 (54%), Positives = 69/94 (73%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSEL+ +LA++ + K + AVK ML+ M+ L++G RIEIRGFGSF L+ R R Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPK+G+KV++ K+VPHFKPGKELR+R + Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERVDGRA 94 >UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms RepID=DBH_XYLFT Length = 94 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI+ +A +++ A+ ++ + L +G+ + + GFG+F + RA R Sbjct: 1 MNKTELIDGVAA-AANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG+ + + P FKPGK L+D Sbjct: 60 GRNPKTGEPIMIAASNNPSFKPGKALKDAV 89 >UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria RepID=IHFB_AERS4 Length = 94 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 72/91 (79%), Positives = 80/91 (87%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKS+LIE+LA + H+PAK VE A+KE+LE MASTL G+RIEIRGFGSFSLHYRAPR Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTGDKVEL GKYVPHFKPGKELR+R N Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91 >UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria RepID=Q2W3I2_MAGSA Length = 136 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K++L+ +A + + AV + E + S L G+ + + GFG+F++ RA Sbjct: 47 VNKNDLVTAVAG-AAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASE 105 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+K+ + P FK GK L+D Sbjct: 106 GRNPRTGEKISIPASKQPKFKAGKGLKDGI 135 >UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria RepID=DBH5_RHILE Length = 91 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ +A + + + AV + + + + L I + GFGSF++ +RA Sbjct: 1 MNKNELVSAVAEK-AGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG +V++ + VP F PGK L+D N Sbjct: 60 GRNPSTGAEVDIPARNVPKFTPGKGLKDAVN 90 >UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria RepID=IHFB_RHOCS Length = 93 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 44/93 (47%), Positives = 64/93 (68%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI RLA + H+ + VE V + + + LA+G+R+E+RGFG+FS+ R R Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+TG+ V++ K++P FK GK+LR+R N Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLNTD 93 >UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium tumefaciens RepID=IHFB_AGRT9 Length = 102 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 39/93 (41%), Positives = 62/93 (66%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ +A + ++ + E+AV +L+ + L +GER++IR FG+F + +R R+ Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP G+ V +E K+VP F+ GKE+RDR N Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLNTA 93 >UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD Length = 90 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI ++A +++ + K + V + + +A +LAQG+ +++ GFG+F + RA R Sbjct: 1 MNKTELIHQVA-ERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++++ P FK GK+L+D Sbjct: 60 GRNPQTGEEIDIAATKTPAFKAGKQLKDAV 89 >UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria RepID=IHFB_BRUMB Length = 94 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 42/91 (46%), Positives = 66/91 (72%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ +A++ H+ + V + V + + + + LA+G R+E+RGFG+FS+ R R+ Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ V++E K+VP FK GK+LRDR N Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLN 91 >UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH Length = 91 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+L+ ++ Q S++ A+ M + S L G+ + I GFGSF + RA RT Sbjct: 1 MNKSDLVAVIS-QISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ ++++ VP FK GK L++ N Sbjct: 60 GRNPQTGEAIQIKASKVPAFKAGKLLKESVN 90 >UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=Gammaproteobacteria RepID=IHFB_SHEDO Length = 95 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 72/92 (78%), Positives = 81/92 (88%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE+LAT+QS + AK VE A+KEMLE MA+TL G+RIEIRGFGSFSLHYRAPRT Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG VEL+GKYVPHFKPGKELR+R + Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERVDA 92 >UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT Length = 98 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+E ++ SH+ K V+ + L + +L +GE++ + GFG+F + RT Sbjct: 1 MNKTELVESVS-DSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+TG+ +E+ + VP F GK LR+ ++ Sbjct: 60 GRNPRTGEALEIPARTVPKFSAGKSLREAIDLA 92 >UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria RepID=Q2W5P8_MAGSA Length = 117 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +L+ ++A + S + ++ + + S L G+ + + GFGSFS+ RA + Sbjct: 27 MNKQDLVNKVA-ELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKE 85 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +++ P F GK L+D N Sbjct: 86 GRNPRTGATIKIAASKAPKFTAGKGLKDAVN 116 >UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMW2_9FIRM Length = 91 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ +A + + + K E AV + E + L +G+++++ GFG+F + R+ R Sbjct: 1 MNKNELVASVAEK-AGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARA 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+T + +++ P FK GK L+D N Sbjct: 60 GRNPRTNETIQIPASKNPAFKAGKALKDAVNA 91 >UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA Length = 91 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ +A + + + + + V + + L G + + GFG+F A R Sbjct: 1 MNKSELIQAIADE-AELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ + + + P F+ GK L+D N Sbjct: 60 GRNPKTGEPLTIAARKTPKFRSGKALKDAVN 90 >UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC Length = 90 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI +A Q + + K AV + E + ++LA+GE++++ GFG+F + RA R Sbjct: 1 MNKTDLINAVAEQ-ADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ VP FK GK L+D Sbjct: 60 GRNPQTGKEIDIPASKVPAFKAGKALKDAV 89 >UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi RepID=A5CCR4_ORITB Length = 125 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 49/91 (53%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K+E + + +++ +E A+ +L + + G I I GFGSF + +RA R Sbjct: 34 LNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAARD 93 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NPKTG K+ + Y FKPGK L+D N Sbjct: 94 GHNPKTGAKIIIPESYQVVFKPGKTLKDACN 124 >UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria RepID=IHFB_NITEC Length = 105 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 53/91 (58%), Positives = 68/91 (74%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI +LA + + AK E VK +L+ MA +LA+GERIEIRGFGSF L+YR R Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPK+G+KV + KYVPHFK GK++R+ + Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELID 91 >UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH Length = 89 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ +A + +P A+ M+E + L +G+ + + GFGSF + RA R Sbjct: 1 MNKSELIDAIAA-SADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG+++ + P F+PGK L+D Sbjct: 60 GRNPKTGEEITIPSAKTPKFRPGKALKDAL 89 >UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding protein n=8 Tax=Rhizobiales RepID=C5B6T6_METEA Length = 163 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 52/90 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +SEL+ RLA Q H+ K E V +L + L G+R+EIRGFG+FS R Sbjct: 59 MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+ V + K F+PGK +R R Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQRL 148 >UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria RepID=B1I182_DESAP Length = 91 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A + +++ K E A+ MLE + L+ G+++++ GFG+F RA R Sbjct: 1 MNKAELISSVAEK-TNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++++ VP FK GKELR+ Sbjct: 60 GRNPQTGEEIDIAATKVPVFKAGKELRESV 89 >UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5 Length = 90 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ +A + +P A+ ++E + L G+ + + GFG+FS+ R R Sbjct: 1 MNKSELIDAIAA-SADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +E+ P FK GK L++ N Sbjct: 60 GRNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90 >UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE Length = 112 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++LIE ++ + + K E V+ + + + +L G++IEIRGFGSF R PR Sbjct: 1 MTKADLIEEVS-RVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG +VE+ K +P+FKP KEL+D N Sbjct: 60 GRNPKTGARVEVPAKKIPYFKPSKELKDVVN 90 >UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria RepID=Q5ZUE2_LEGPH Length = 100 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ +A+ S + ++ + + L +G+++ I GFGSFS R+ RT Sbjct: 9 MNKSELVDAIAS-GSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSART 67 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ V FK GK L++ Sbjct: 68 GRNPQTGKTIQIKASRVAKFKAGKNLKEAV 97 >UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AXT3_RUMGN Length = 92 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 56/92 (60%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+S+LI+ +A + + + ++ V L+ +A L G++++ GFGSF + RA RT Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+ G ++ +E FK GKEL+D+ N Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKVNA 92 >UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=Deltaproteobacteria RepID=IHFA_MYXXD Length = 129 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+++IE + + K + V+ + + + TL +G++I+I GFG+F + + R Sbjct: 1 MTKADIIEGVYEK-VGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNP+TG ++E+ + V F+P + L+ N Sbjct: 60 GRNPQTGKEIEISARRVLTFRPSQVLKSALNGEA 93 >UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK7_DESVV Length = 91 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 50/90 (55%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+EL+E++ + E A+ + +A +A GE + GFGSF + RA R Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++ + V F PGK L+D Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAV 90 >UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria RepID=Q7WX14_RALEH Length = 114 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+ELIE +A + E+A+ L + +A+G+ + + GFG+FS RA R Sbjct: 22 MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 RNP+TG+++++E FK G+ R+ N Sbjct: 82 ARNPRTGEEIKVEAARTVKFKAGQRFREAVNQE 114 >UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A4JQB1_BURVG Length = 92 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+ +A + + V+ +L+ + +++ E +++ GFG+FS R+ RT Sbjct: 1 MNKQELIDAVAA-GAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG+++ + F GK +D N Sbjct: 60 GRNPTTGEEIAIAAANTVKFAAGKAFKDAVN 90 >UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria RepID=IHFB_MANSM Length = 94 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 60/94 (63%), Positives = 72/94 (76%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE L + I K+VE+AVKE+LEHM+ L G+RIEIRGFGSFSLH+R PR Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPKTG +V+L+ K VPHFK GKELR+R + Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERVDFNA 94 >UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WDC5_BORBR Length = 93 Score = 105 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +LI L+ + + + E+ V + ++ L GE + G G FS RA RT Sbjct: 3 LTKKDLIATLSYE-TGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAART 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+TG+ VE+ F K L+D+ N Sbjct: 62 GRNPQTGEPVEIAASVAVKFSASKTLKDQVNA 93 >UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria RepID=IHFA_BORA1 Length = 116 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+EL E L ++ + + +D V E + LA+G+ +++ GFG+F + + PR Sbjct: 12 LTKAELAELLF-ERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRP 70 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPKTG+ + + + V F ++L+ G Sbjct: 71 GRNPKTGETIPIAARRVVTFHASQKLKSTVEQSG 104 >UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=Q0AI99_NITEC Length = 90 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELIE +A + + I +A+ L + L++ + + + GFG+F + RA RT Sbjct: 1 MNKSELIEAIA-RHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +++++ VP F GK L+D N Sbjct: 60 GRNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90 >UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root RepID=DBH2_BACSU Length = 92 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI ++A +Q + K +V+++ + ++ L GE++ I GFG+F + RA R Sbjct: 1 MNKTELIAKVAEKQ-GVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++++ P FKP K L+D Sbjct: 60 GRNPQTGEEIDIPATKAPAFKPAKALKDAV 89 >UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia RepID=Q2J6X1_FRASC Length = 94 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+L++R+A Q AV + + + +A GE++ I GFG F RA RT Sbjct: 1 MNKSQLVDRIAQQIEG-GRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP TG+ V + VP F+PG E + + Sbjct: 60 GRNPATGEPVHVAASVVPKFRPGSEFKSSVSAS 92 >UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A1AW42_RUTMC Length = 91 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ +A +++ A+ + + +A + +++ GFGSF + RA RT Sbjct: 1 MNKSELIDAIAL-AANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+TG ++++ V FK GK L++ N Sbjct: 60 GRNPQTGATIQIKASKVAAFKAGKALKEAVNK 91 >UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A9C1_THECD Length = 159 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++ELIE +A + V + E + + GER+ + GFG+F R RT Sbjct: 1 MNRTELIEAVAA-LAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ VE+ P F+ G+ +DR Sbjct: 60 ARNPRTGEPVEVPPTETPRFRAGQTFKDRV 89 >UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN Length = 90 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI+ +A + + K + A++ L+ + ++L +GE +++ GFG+F ++ RA RT Sbjct: 1 MNKTDLIDAIAN-AAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ VP F GK L+D Sbjct: 60 GRNPQTGAEIQIAASKVPAFVSGKALKDAI 89 >UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A906_GEMAT Length = 110 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 5/95 (5%) Query: 1 MTKSELIERLATQQSH-----IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHY 55 MTK++L+E + + + I K V L+ + L + + IE+RGFG+F + Sbjct: 1 MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60 Query: 56 RAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 R R RNP+TG VE+ + VP FKP KELR Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMV 95 >UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX6_LEGLO Length = 92 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI ++ S + E A+ ++ + LA+G+ I + GF S S+ RT Sbjct: 1 MNKKELIAAISN-TSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG +E+ V FK G +L++ N Sbjct: 60 GRNPSTGQPIEIAASKVVSFKTGTKLKEAIN 90 >UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS Length = 92 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+ +A Q + + + +LE + +++G+ +++ GFGSF RA RT Sbjct: 1 MNKQELIDAVAAQ-TGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPKTG+ +++ F GK +D N Sbjct: 60 GRNPKTGETIKIPAAKTVKFTAGKAFKDAVNKR 92 >UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms RepID=DBHA_AERHY Length = 90 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L++ +A + + + + A++E++ + +L +G+ +++ GFG+F +++RA RT Sbjct: 1 MNKAQLVDAIAAK-ADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ VP F GK L+D Sbjct: 60 GRNPQTGKEIQIAAANVPSFVAGKALKDAV 89 >UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BPZ9_RALP1 Length = 94 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + +L + +A + S+ + V + + + +A G+ ++I GFG+FS R R Sbjct: 1 MNRKDLAKAIADR-SNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARN 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 G NP TG+++++ F G LR N Sbjct: 60 GHNPGTGEEIQVPAVTTVRFSAGSRLRQAVNRE 92 >UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 Tax=Methylobacterium sp. 4-46 RepID=B0UCA4_METS4 Length = 102 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 53/91 (58%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +++LI+R+A H+P + V+ +L+ + L +G+RIE+RGFG R R Sbjct: 1 MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+ VE+ K F+ +E+ +R N Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERLN 91 >UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI Length = 105 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 51/90 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + + +L++++A++ + KT A+ LE +A LAQG +++ GFGSF + R RT Sbjct: 7 LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 +P+TG V + + F P + LR+R Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERL 96 >UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE Length = 90 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL +A + + + + + +L+ + L + + + + GFG+F +R RT Sbjct: 1 MRKPELAAAIAEK-ADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G+NP+TG V+++ FKPGK LRD N Sbjct: 60 GKNPQTGQPVKIKASNTVAFKPGKALRDAVN 90 >UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2T0_SALRD Length = 100 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++LI+++A + + V+ + + + +G RIE+R FG F + +RAPRT Sbjct: 3 MTKADLIDQIA-DGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+T + VE+E +Y P F+P +L + + Sbjct: 62 GRNPQTNEPVEIEDRYKPVFRPSDKLSEAVDAA 94 >UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria RepID=Q3A4K6_PELCD Length = 92 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI+ LA ++ + K E+ V +L+ M+ TL +G RIEIRGFGS + Sbjct: 1 MNKSELIDALAEKK-GLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPKTG+++E++ K +P FK GKELR+R N Sbjct: 60 GRNPKTGEEIEVKPKKLPFFKVGKELRERINKS 92 >UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular organisms RepID=IHFA_TOLAT Length = 106 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+++ E L T+ I + ++ V+ E + L GE+++I GFG+F L + R Sbjct: 3 LTKADIAEHLFTEL-GISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG+ + + + V F+PG++L+ R Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales RepID=A6TJN4_ALKMQ Length = 92 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 2/92 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L+ ++A + S + K E A+ +E + L G+++++ GFG+F + R PR Sbjct: 1 MNKADLVAKMAEK-SELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQ 59 Query: 61 GRNPKTGDK-VELEGKYVPHFKPGKELRDRAN 91 GRNP+ ++ +E+ P FK GK L+++ N Sbjct: 60 GRNPRNPEQVIEIPASKAPVFKAGKTLKEKIN 91 >UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS Length = 94 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 52/92 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++LI+++ + + ++V+ L L G + + GFG F++ ++ R Sbjct: 3 LTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSRR 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+TGD++ LE + V FKP LRD+ N Sbjct: 63 GRNPQTGDELTLEARRVVTFKPSGILRDKINA 94 >UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT Length = 93 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 49/90 (54%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +LI +A + K ++ AV MLE + L + R+EIRGFGSFS+ R RT Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 +NP+TG + + + HF K L+D Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGL 90 >UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation n=34 Tax=root RepID=B3R809_CUPTR Length = 92 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 51/91 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+ELI+ +A + E A+ L + +A+G+ + + GFG+FS R R Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+++++E FK G++ +D N Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91 >UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX16_9DELT Length = 95 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++LI+ + + ++ + V+ L +L +GE + + GFG FS+ + R Sbjct: 3 LTKADLIQEVYQRH-NLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRR 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+++ L + V FKP LR R N Sbjct: 62 GRNPQTGEELMLAPRRVITFKPSGLLRQRVN 92 >UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 Tax=Cystobacterineae RepID=A7H8A7_ANADF Length = 126 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+LI L ++ + K E ++ + + M L +GE IEIRG G+F + + Sbjct: 1 MLKSDLINILVVKR-GVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG+ + ++ K F+ GKELRDR N Sbjct: 60 GRNPKTGEVIPVKPKRGILFRTGKELRDRVNR 91 >UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales RepID=A6LB49_PARD8 Length = 94 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE LA + + + + + + +E + +++ E I + GFG+ + R Sbjct: 1 MNKAELIEALADK-TGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRL 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 RNPKTG V + + FKPGK L + N + Sbjct: 60 ARNPKTGTPVMIPARTTVKFKPGKFLLEAMNAH 92 >UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA Length = 91 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A + S + K E A+K ++E + L +GE++++ GFG+F RA R Sbjct: 1 MNKAELITSMAEK-SKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+T + + + VP FK GKE +D+ N Sbjct: 60 GRNPRTKEVINIPATTVPVFKAGKEFKDKVNK 91 >UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria RepID=IHFA_NITOC Length = 99 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+++ E L + + + ++ V+ E + L QGE +++ GFG+F L + R Sbjct: 3 LTKADMTETLYQEL-GLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPKTG+++ + + V F+PG++L+ R Y Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARVEAYA 95 >UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae RepID=Q8SME4_CYAME Length = 112 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A + + K V + + E+L +A L G+++++ GFG+FS YRA R Sbjct: 1 MDKTELISAVAEK-VGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARD 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+++ + ++V F PG +L+ + Sbjct: 60 GRNPRTGERLIIPERHVVVFSPGSDLKQQV 89 >UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVU7_ALIAD Length = 90 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL+ + + +P V + E L GE + + G F R+ R Sbjct: 1 MNKGELVAEVQAR-VGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARR 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+ +++ K F+P L+ R N Sbjct: 60 QRNPQTGEMIDVPEKATVRFRPSGALKGRVN 90 >UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2 Tax=Burkholderiaceae RepID=B2AK36_CUPTR Length = 92 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 53/92 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI+ +A + E A+ L + T+A+G+ + + GFGSFS R R Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 RNP+TG+K+ ++ F+PG++ +D AN Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDAANA 92 >UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6 Length = 93 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI +A + S + K E A+K +E + L GE++++ GFG+F RA R Sbjct: 1 MNKSELITSMAEK-SKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+T +++ + P FK GKEL+++ N Sbjct: 60 GRNPRTKEEITIPASIAPVFKAGKELKEKVNKN 92 >UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE Length = 92 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K E +E LA + + + A+ +L+ + +A GE++ GFGSF + RA RT Sbjct: 1 MNKGEFVEALADRL-DVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +++ VP F G L+ N Sbjct: 60 GRNPQTGASIKIAASRVPKFSAGATLKTAIN 90 >UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F3B Length = 114 Score = 99.8 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +L+E +A + S K E AV +L+ + L QG+ +++ GFG F + R R Sbjct: 23 MNKEQLVEVVA-KSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARM 81 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRN KTG++VEL VP F G L+ N Sbjct: 82 GRNRKTGEEVELPAGKVPVFTAGITLKKALNR 113 >UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 Tax=Anaeromyxobacter RepID=B4UEN5_ANASK Length = 90 Score = 99.4 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 50/90 (55%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++LIE++ + + V V + EH+A + + +R + GFG+F + RA R Sbjct: 1 MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ FKP EL+ Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90 >UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJS4_TERTT Length = 93 Score = 99.4 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L+++L T + +D V+ ++E + + LA+GER+++ G GSFS+ +R T Sbjct: 1 MRKTDLVKQLCT-LGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 G NP+TG+ + + K FK GK LRD Sbjct: 60 GINPQTGEALRIAAKNQIFFKAGKRLRD 87 >UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=B2IE05_BEII9 Length = 171 Score = 99.4 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L + I K + V E+L + L +GE + + FG+F + + R Sbjct: 72 VTRKDLASSVY-DCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRI 130 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+TG + + V FK K L DR N Sbjct: 131 GRNPRTGVAAVIPPRRVLKFKASKVLLDRLNGD 163 >UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6F1_HAMD5 Length = 114 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI+ +A + + I + +L+ + +L + E +++ GFG+F++ +R R Sbjct: 1 MNKAQLIDEIA-ENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARN 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ +EL YVP K L+D Sbjct: 60 ARNPQTGEPIELPACYVPSLNFAKALKDAL 89 >UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales RepID=IHFA_RHOP2 Length = 123 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L E + + + V+ +L+ + L +GE +++ FGSF + + R Sbjct: 8 VTRVDLCEAVYQK-VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRI 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPKTG +V + + V FKP L+ R N G Sbjct: 67 GRNPKTGTEVPISPRRVMVFKPSAILKQRINANG 100 >UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VZ6_DESDG Length = 95 Score = 99.0 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 1 MTKSEL----IERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYR 56 MTK+EL +E LA K V D + L+ + LA G+ + + GFG+F + R Sbjct: 1 MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60 Query: 57 APRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 R GRNPKTG+ VE+ F PGK L++ N Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN 95 >UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=Planctomycetaceae RepID=C1ZKD3_PLALI Length = 171 Score = 98.6 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E+++ ++ + + ++ V++ + + TL RIE+R FG F + RA R Sbjct: 1 MTKKEIVKAISDEI-GLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TGDKV + K+V FKPGKE+ ++ Sbjct: 60 ARNPRTGDKVFVPEKFVVTFKPGKEMEEKV 89 >UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation n=3 Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT Length = 89 Score = 98.2 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L+ +A Q+S + K + A+ + + + +LA+G++++I GFG+F+L Y RT Sbjct: 1 MNKAQLVTAMA-QKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG +E+EG FK K L+D Sbjct: 60 GRNPQTGASIEIEGANKAVFKASKALKDVL 89 >UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2 Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS Length = 103 Score = 97.9 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ E+ E L Q + V L M L +GE I++ FG+F++ +APRT Sbjct: 13 LTRKEIAEELTGQL-GYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRT 71 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+TG+ + + + F+P K+LR++ N Sbjct: 72 GRNPRTGEPITITKRQAVSFRPSKKLREQVNE 103 >UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=Gammaproteobacteria RepID=IHFA_SHEDO Length = 99 Score = 97.9 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+E+ E L + + + ++ V+ E + L GE++++ GFG+F L + R Sbjct: 3 LTKAEMAEHLF-ETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPKTG+ + + + V F+PG++L+ R Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEAA 94 >UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO Length = 91 Score = 97.9 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 K +LI ++A + + + K AV + + L++GE++++ GFG+F + RA R G Sbjct: 3 NKQDLIAKVA-EATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG ++++ VP FK GK L+D Sbjct: 62 RNPQTGAEIKIAASKVPAFKAGKALKDAV 90 >UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6T8_9PROT Length = 100 Score = 97.9 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 48/89 (53%), Positives = 67/89 (75%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +S+LI +LA Q ++ AK VE V+ +L+ +A+T+++G R+EIRGFGSF L+YR PR Sbjct: 6 MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 65 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 GRNPKTG K+E+ KY P FKPGK L++ Sbjct: 66 GRNPKTGAKIEVAAKYHPRFKPGKALKEM 94 >UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria RepID=Q0AZ79_SYNWW Length = 110 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL++ LA + + I K + ++E + LA G++++I GFGSF + R R Sbjct: 1 MNKSELVKSLAEK-AEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 +P TG ++ + VP FKPGK L Sbjct: 60 VISPATGKEITVPATKVPAFKPGKSL 85 >UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2Z0_9PLAN Length = 159 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK E+++ ++ + + ++ V++ + TL + RIE+R FG F + RA R Sbjct: 20 VTKKEIVKTISEEI-GLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARK 78 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+KV + K+V FKPGKE+ +R Sbjct: 79 ARNPRTGEKVYVPSKFVVTFKPGKEMEERV 108 >UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM Length = 91 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M EL +++ ++ + AV LE ++ +L Q + + GFG+FS+ RA R Sbjct: 1 MNLGEL-KKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+K+ + FK G+ LR++ N Sbjct: 60 GRNPQTGEKINISASRTIRFKAGQSLREKVN 90 >UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B856_9PORP Length = 101 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K L+E ++ + ++P V + + + +A +L + ER+ I+ FGSF L ++A R Sbjct: 1 MNKHSLVEIISDRL-NMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 RNPKTG+ + + + F PGK L D N Sbjct: 60 VRNPKTGEPMIFQPRNSVKFVPGKHLVDLLNRQA 93 >UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH Length = 91 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI L Q++ + + V+ + + LA ER+EIRG SF + T Sbjct: 1 MNKLELISVL-KQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG KV + K +P FK GKEL++R + Sbjct: 60 GRNPKTGAKVTIPAKKLPFFKCGKELKERVD 90 >UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani RepID=Q3J6Y8_NITOC Length = 94 Score = 97.1 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ + + +++ T + AV + + + L++ R+ + GFGSFS+ RA R+ Sbjct: 1 MNKTELVNFVVLK-ANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARS 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GR+P++G+ + ++ K P FKP K L++ Sbjct: 60 GRHPQSGEVIIIQAKSAPTFKPSKALKEIV 89 >UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae RepID=B4S407_PROA2 Length = 103 Score = 97.1 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 TK++L+ ++ + + E V + E + +L G+RIEIRGFGSF++ Y+ R Sbjct: 6 TKADLVNTIS-HTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERLA 64 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+KV +E K VP FK KE + Sbjct: 65 RNPRTGEKVSVEAKNVPTFKISKEFKHAV 93 >UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UA57_9DELT Length = 92 Score = 97.1 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQS-HIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPR 59 M KSEL++ + +++ VE AV + L+ +A LA+ +++ I GFGSF APR Sbjct: 1 MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP G+ V++ FKPGK L++ Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAV 91 >UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BF20_STRRD Length = 106 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELIE+ A + + + + A++ +L + + +A +++ I GFGSF + ++ RT Sbjct: 12 MNKRELIEKAAAE-AGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPART 70 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 GRNP+TG+ +E+ + FKP Sbjct: 71 GRNPQTGEPLEIAETWTAKFKPSPGF 96 >UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis RepID=B2RHA9_PORG3 Length = 88 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++ I +A + +++ + AV E + + GE+I + GFG+FS+ RA R Sbjct: 1 MNKTDFIAAVAEK-ANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 G NPKT + + + V FKPG L Sbjct: 60 GINPKTKKSISIPARKVVRFKPGSTL 85 >UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi (class) RepID=A9AXB4_HERA2 Length = 95 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K E I +A +++ I K V ML+ ++ L GE++ + GFG+F + R R Sbjct: 1 MQKIEFIAEVA-ERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 G NPKT +++ +E P F L+ Sbjct: 60 GVNPKTRERMTIEATKTPGFSASNSLKLLV 89 >UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteobacteria RepID=Q1GXQ0_METFK Length = 90 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL+ + + ++ A E + + + LA+G + + G G S+ RA R Sbjct: 1 MKKSELVALI--KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARA 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ + +E K P F K L+D N Sbjct: 59 GRNPRTGEIIPIEAKKTPKFSAAKALKDAVN 89 >UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWH5_9PLAN Length = 180 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK E+++ ++ + + ++ V++ + + TL + RIE+R FG F + RA R Sbjct: 57 VTKKEIVKTISEEI-GLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARK 115 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG V + K+V FKPGKE+ ++ Sbjct: 116 ARNPRTGQPVYVAEKFVVTFKPGKEMEEKV 145 >UniRef50_A0L712 Histone family protein DNA-binding protein n=5 Tax=Magnetococcus sp. MC-1 RepID=A0L712_MAGSM Length = 91 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELI +A Q+ + + V + + LA+GER+E+RGFG F R PR Sbjct: 1 MTKSELILTIAAQK-GLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRA 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+KV +E K HFKPG ++R R + Sbjct: 60 ARNPKTGEKVAVESKTAVHFKPGLDMRKRVD 90 >UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms RepID=DBH1_RHILE Length = 91 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ +A + + + AV + E + S L G I + GFGSFS+ R Sbjct: 1 MNKNELVSAVAEK-AGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG +V++ + VP F GK L+D N Sbjct: 60 GRNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90 >UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG Length = 101 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL +A + + + + + +L+ + L + + + GFG+F +R RT Sbjct: 1 MRKPELAAVIAEK-ADLTKEKANQVLNAILDSITGALDKD-TVTLVGFGTFEKRHRGART 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G+NP+TG+ V+++ FKPGK L+D N Sbjct: 59 GKNPQTGEPVKIKASNTVAFKPGKNLKDSVN 89 >UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum ferrodiazotrophum RepID=C6HU01_9BACT Length = 99 Score = 95.9 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 48/89 (53%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKS+L RLA + I + L+ M LA G+ +EIR FG +H +APR Sbjct: 1 MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 GRNPKTG V + + FK G+ L++ Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNA 89 >UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4H0_HAMD5 Length = 119 Score = 95.9 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE++ +S + +AV + + L + E ++I FG+F + +R R Sbjct: 1 MNKTELIEQV-RDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 RNPKTG+K++ + V F GK L+D ++ Sbjct: 60 SRNPKTGEKIKTPAREVAVFSAGKSLKDSVHLQA 93 >UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH Length = 90 Score = 95.9 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK ELI+RLA +++++ V + + + LA G I + G F L +A R Sbjct: 1 MTKQELIQRLA-ERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARM 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG+ V + + F P K L+D Sbjct: 60 GRNPKTGESVMIPARRKIVFTPAKALKDAV 89 >UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales RepID=IHFA_POLNA Length = 123 Score = 95.9 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+ L E L Q + + ++ + E ++ L +G+ ++I GFG+F + +APR Sbjct: 13 LTKAHLAELLFEQI-GLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRP 71 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+ + +E + V F +L+++ Sbjct: 72 GRNPRTGEAIPIESRRVVTFHASHKLKEQI 101 >UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=Alphaproteobacteria RepID=IHFA_SILPO Length = 100 Score = 95.9 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L E + + + V+ ML HM+ L +GE+++I FG+FS+ ++ R Sbjct: 6 LTRMDLSEAVFRE-VGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARV 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG++V ++ + V F+P +++R Sbjct: 65 GRNPKTGEEVPIQPRRVLTFRPSHLMKERV 94 >UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria RepID=Q121G1_POLSJ Length = 103 Score = 95.9 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++ELI+ +A + + + ++ +LE + + +G+ +++ GFG+F RA RT Sbjct: 1 MNRAELIDTIAAE-TDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G+NP+TG+ V++ VP F G + + + Sbjct: 60 GKNPRTGEAVKIPATTVPKFVAGAKFKAVVD 90 >UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular organisms RepID=B1Y4B9_LEPCP Length = 131 Score = 95.5 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE LA Q + + + +L+ + +T+ +G + + GFGSF H RA R Sbjct: 1 MNKAELIEVLAKQHT-LSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARN 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NP TGDK+++ +P F PG + + Sbjct: 60 GVNPGTGDKIKIAAVKLPKFTPGTAFKAAVD 90 >UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii RepID=B6KEZ7_TOXGO Length = 235 Score = 95.5 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L+ +A + +P VE V L H++++L QG+++ + FGS L R R Sbjct: 121 VTRKDLVASVAAEL-QVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERV 179 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+++ + P F K L+D+ Sbjct: 180 ARNPRTGEQLTVPATTFPTFSFSKVLKDKV 209 >UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH73_THEYD Length = 92 Score = 95.2 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 57/92 (61%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELIER++ + + K +E + + + M TL++GE+IEIRGF +F + R R Sbjct: 1 MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 RNPKTG+++++ + +FK K L++ N Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEALNK 92 >UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=Alphaproteobacteria RepID=IHFA_DINSH Length = 101 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L + + + + V+ +L HM+ L +GE ++I FG+FS+ ++ R Sbjct: 6 LTRMDLSDAVFRE-VGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARI 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG++V + + V F+P +++R Sbjct: 65 GRNPKTGEEVPIHPRRVLTFRPSHLMKERV 94 >UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS Length = 124 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK LI+ +A + + ++ V++ L+ + L +G IEIRGFG+F+ R R Sbjct: 4 ITKQSLIQEIA-KSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARP 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+ V ++ + VP FK +++D+ N Sbjct: 63 ARNPRTGETVLIDERLVPTFKFSNDIKDKIN 93 >UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA Length = 97 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++++E + Q +PAK V+++LE + S+L G+ + I GFG F + ++ R Sbjct: 3 LTKAQIVEEIHNQL-GLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRR 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP TGD + L+ + V F LRDR N Sbjct: 62 GRNPATGDSIILDARKVVTFTCSGVLRDRINSN 94 >UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Desulfovibrio vulgaris RepID=Q72CZ7_DESVH Length = 95 Score = 95.2 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%) Query: 1 MTKSELIERLAT--QQSH--IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYR 56 M + EL+ + +++ I + VE + + A+ L +G + + G R Sbjct: 1 MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60 Query: 57 APRTGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 A R GRNP+TG+ + + + V FK GK+LR+ Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94 >UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms RepID=DBH_GUITH Length = 93 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+LI ++A + +E + MLE + T+A GE++ + GFGSF R R Sbjct: 1 MNKSQLISKIAY-YTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+TG+K+ L +P F G R++ N Sbjct: 60 GRNPRTGEKLFLPASRIPTFSVGNFFRNKVNK 91 >UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=root RepID=Q1V2L3_PELUB Length = 91 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +LI +L+ ++ E + + L + ++I GFG++ + R R Sbjct: 1 MNKKQLIAQLSG-SLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+TG+++++ F P K L++ N Sbjct: 60 GRNPRTGEQIQIGASQKVKFLPAKALKEIFNK 91 >UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria RepID=Q39VS3_GEOMG Length = 91 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++++E++ + K + V+ + + TL GE+I+I GFG+F + +A R Sbjct: 1 MTKADIVEQIYEK-VGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRR 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TGD++ + + + FKP + L+ N Sbjct: 60 GRNPQTGDEIIISARRILTFKPSQVLKSSIN 90 >UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 Tax=Proteobacteria RepID=A1WDL1_ACISJ Length = 91 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + +LI+ +A + + ++ + + +A+G +++ GFG+F A RT Sbjct: 1 MNRQDLIDAIAED-TEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG +++ + P F PG +D Sbjct: 60 GRNPKTGAPIKIPSTHKPKFTPGATFKDLV 89 >UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9H9_MAGSM Length = 109 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M LI+++A ++ ++ V + V+++L+ + L++ E + + FG F++ P Sbjct: 1 MDAKGLIQQIARKR-NLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWL 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GR+P+TG+ ++L GK VP FK ELR R N Sbjct: 60 GRHPQTGEMMKLPGKNVPFFKSDSELRKRLN 90 >UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=Gammaproteobacteria RepID=IHFA_PSYA2 Length = 99 Score = 94.8 bits (235), Expect = 9e-19, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TKS++IE L + ++ + V+ + ++ +L G+ +++ GFG+F L + R Sbjct: 4 LTKSDMIEHLMS-HLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRP 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPKTG+ V + + V FK G++ R + + Sbjct: 63 GRNPKTGEPVAVSARRVVTFKTGQKFRQQVDER 95 >UniRef50_C9LHL9 Putative integration host factor IHF alpha subunit n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LHL9_9BACT Length = 423 Score = 94.4 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 3/95 (3%) Query: 1 MTKSELIERLA---TQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRA 57 M + L++ +A Q+++I K E + + + L ++I+GFG+F + Sbjct: 1 MNRKLLLQEVADAFAQRANISKKKAEAFCRAFFDLIEEELTHESFVKIKGFGTFKVITVN 60 Query: 58 PRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 R N TG+++ ++ F P +L+D N Sbjct: 61 ERESININTGERIRIDSHAKLSFVPDSQLKDLINK 95 >UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7AFK0_9BACE Length = 106 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+ +A S + + + +A+GE + G G+F + R Sbjct: 1 MNKQELIKAVAA-ASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNP TG + + + V F PGK LR+ G Sbjct: 60 GRNPFTGLGMRIPTRKVVKFSPGKSLREAVIKKG 93 >UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2 Length = 96 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSEL+ +A + S + E A+ ++ + TLA+GE++++ GFG+F R R Sbjct: 1 MNKSELLSSIAKK-SELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKARE 59 Query: 61 GRNPKTGDK-VELEGKYVPHFKPGKELRDRAN 91 GRNP+ ++ +++ P FK GK L++ N Sbjct: 60 GRNPRNPEEKIQIPASNAPVFKAGKSLKEAVN 91 >UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJA9_9BACT Length = 95 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++L++ ++ + + I K V V +L + ++A+G IEIRGFG+F L R PR Sbjct: 1 MTKADLVKIIS-ENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKT KV + + VP FK +E ++ Sbjct: 60 GRNPKTDQKVPVPARTVPTFKFSREFKNAV 89 >UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctomycetaceae RepID=A6CAS4_9PLAN Length = 148 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E+++ ++ + + ++ V++ + + TL +RIE+R FG F + RA R Sbjct: 1 MTKKEIVKVISEEI-GLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TGD+V++E KYV FKPGKE+ R Sbjct: 60 ARNPRTGDRVDVEEKYVVTFKPGKEMEKRV 89 >UniRef50_B8II37 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8II37_METNO Length = 113 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +++LI+R+A H+ E V+ +L+ M L Q ERI +RGFG+F + R R Sbjct: 1 MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NP+TG+ V + + F+ E+ R N Sbjct: 60 GHNPRTGEAVAVPARRDVRFRASTEMLHRLN 90 >UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=Alphaproteobacteria RepID=IHFA_BRASO Length = 119 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L E + Q+ + V+ +L+ + L +GE +++ FGSF + + R Sbjct: 8 VTRVDLCEAVY-QKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRI 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG +V + + V FKP L+ R N Sbjct: 67 GRNPKTGTEVPISPRRVMVFKPSAILKQRIN 97 >UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC Length = 101 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++LI L+ S + + AV+ +L+ + + G+ IEIRGFG F +R PR Sbjct: 10 MKKTDLILNLS-DSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQ 68 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 G NPKT ++ ++ K+VP FKPGK L++ N Sbjct: 69 GINPKTSERTQVGEKFVPFFKPGKLLKEIVNK 100 >UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGM2_9BACT Length = 91 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++++E + + + K + V E+ + + ++I GFG+F + R R Sbjct: 1 MTKADIVELIHEKL-GLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG + +E + V F+P + +D N Sbjct: 60 GRNPKTGVETVIEPRTVVVFRPSQIFKDEVN 90 >UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group RepID=DBH_RICCN Length = 99 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%) Query: 1 MTKSELIERLATQQSH--------IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFS 52 M K+E I + + + E A+ +L+ + S + I I GFGSF Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60 Query: 53 LHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 +H+R R GRNPKTG K++++ P F+ G+++++ N Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 99 >UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 Tax=Beijerinckiaceae RepID=B2ICU5_BEII9 Length = 122 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 T+++L++ + T S + + + LE ++ L +GE +++R FG FS+ + R G Sbjct: 21 TRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG 80 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG +V ++ + V FK L N Sbjct: 81 RNPRTGVEVPIKPRRVLTFKASPVLAASVN 110 >UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7A84 Length = 88 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI+ +A + + + A+ +++ + T+ +GE I + GFGSF + R R Sbjct: 1 MNKTELIKEVALK-GKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERN 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELR 87 G NP TG + + K F+PG ++R Sbjct: 60 GHNPSTGGSMVIPAKRQVKFRPGSKMR 86 >UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGK9_KYTSD Length = 106 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 2/90 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++L L V +++ M +A G + + GFG+F RAPRT Sbjct: 1 MNKADLARILEPIVGG--QGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRT 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+ V + G P F+P R Sbjct: 59 GRNPRTGEVVRIPGTAGPRFRPSPMFRGFV 88 >UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria RepID=B1XSK3_POLNS Length = 106 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K+ELI +A + I E A+ +E++ + +G+ +++ GFG+F+ RA R Sbjct: 13 LNKAELIAAIADD-AEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARM 71 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPKTG+ +++ F GK +D N Sbjct: 72 GRNPKTGEPLKIAAAKTVKFSAGKAFKDSVNKR 104 >UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bacteroides RepID=A7V341_BACUN Length = 404 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + +LI+ LA + + K + VKE + + +L + + ++IRG G+F L R Sbjct: 5 LNIQDLIDTLAERH-GMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVGSRE 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 N TG++ E++G F P L+D N Sbjct: 64 SVNVNTGERFEIQGHTKVSFTPEPALKDIINR 95 >UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WS11_RHOS5 Length = 90 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + KS+L+ +A + + V+ + E ++ +A+ + G+ I + GFGSF +R RT Sbjct: 4 LNKSDLVSTVAEK-VGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPART 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKE 85 GRNP+TG+ V + F P + Sbjct: 63 GRNPRTGEAVAIPASTSIGFTPSRR 87 >UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB6_THET1 Length = 84 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGR 62 K+ELI ++A +++ + V+ +EML + S+L +GE + IRGFG+F + R+PR GR Sbjct: 4 KTELINQVA-ERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGR 62 Query: 63 NPKTGDKVELEGKYVPHFKPGK 84 NP+TG+++E+ G F+ K Sbjct: 63 NPRTGEEIEIPGGKRVTFRMSK 84 >UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q397_CATAD Length = 167 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K++L +A Q S V + + + +A GER++I GFG+F RA R Sbjct: 2 VNKADLAAEVAEQMSGAEP-DARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARL 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG +++ P F G+ R R Sbjct: 61 GRNPQTGAAIQVPAGTSPRFHAGQTFRTRV 90 >UniRef50_B1A4K2 Integration host factor subunit A-like protein n=2 Tax=Gammaproteobacteria RepID=B1A4K2_9GAMM Length = 112 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L LA V + + TLAQGE +++ GFG+F L + R Sbjct: 3 VTRKDLAYYLA-DTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKT VE+ + V F + L+ N Sbjct: 62 GRNPKTKVPVEITARRVVTFHASQSLKGHCN 92 >UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EUM1_9BACT Length = 102 Score = 93.2 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 47/90 (52%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TKSELI+ L + + K V + V ++ + +A+G + I GFG F RA RT Sbjct: 9 LTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAART 68 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP TG +++ P F GK +D Sbjct: 69 GRNPATGAVIKIAATTTPRFAAGKAFKDSV 98 >UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellular organisms RepID=A5EU64_BRASB Length = 130 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Query: 1 MTKS-ELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPR 59 MT + E+ E++A + + + V + + +A G + GFG F + R Sbjct: 30 MTTANEIAEKIAAEN-DLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAR 88 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG + + F P K ++D N Sbjct: 89 EGRNPSTGATIAIAASRKLTFTPAKAIKDSLN 120 >UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidales RepID=A6LHR2_PARD8 Length = 95 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + EL++ LA + S + V+ E L + + GFG+ S + R Sbjct: 1 MNRRELVKTLADKLS-VTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPK G + + FKPGK L + N Sbjct: 60 GRNPKNGVAYMIRARKSVKFKPGKLLLKQLNAS 92 >UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5 Length = 113 Score = 92.5 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE++ +S + +AV + + +L + E ++I F +F + +R+ R Sbjct: 1 MNKTELIEQV-RDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERM 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 R+PKTG+K++ + VP F GK L+ Sbjct: 60 SRHPKTGEKIKTPAREVPVFSAGKRLKASV 89 >UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN Length = 92 Score = 92.5 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 TK+EL+ +A + + I +DA++ +E + +L G+ + + GFG+F RA T Sbjct: 3 TKAELVTAIAEK-AGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTA 61 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP+TG+ V F+ G+ L+ N Sbjct: 62 RNPRTGETVNRPASKTARFQVGEGLKSSLN 91 >UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio RepID=B8DML6_DESVM Length = 95 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 1 MTKSELIERLATQQSHI--PAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 +TK+E + L + + E A +A +A G + + G G+FS+ RA Sbjct: 2 LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 RTGRNP+TG + + + F K L D N Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTLVDGLNK 95 >UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=A0LI64_SYNFM Length = 96 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE LA + I K E AV + M + L + +R+EIRGFGSF + Sbjct: 1 MTKSELIETLA-KAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG+ +E+ K +P FK GKEL++R N Sbjct: 60 GRNPKTGELIEVNSKKLPFFKVGKELKERVN 90 >UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B7U9_9PORP Length = 99 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + + IE++ + +P TVE V+ LE ++ L G + I+ FGSF + R Sbjct: 1 MNRKD-IEKITAARLGVPVTTVEPFVQAFLETVSDCLMYGHHVTIQRFGSFRRWEQTSRP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 RNP+TG+ LE + F PGK L ++ N Sbjct: 60 VRNPRTGEPCMLEPRTSVKFNPGKTLFEKMNTD 92 >UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WST8_9DELT Length = 97 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 1 MTKSELIERLATQQS-----HIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHY 55 MTK +L+ + + + VE ++ + + A L G + + G G Sbjct: 1 MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60 Query: 56 RAPRTGRNPKTGDKVELEGKYVPHFKPGKEL 86 RA R GRNP+TG+ V + + V F P ++L Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKL 91 >UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=Bacteroidales RepID=C7XFY9_9PORP Length = 98 Score = 92.1 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M + EL++ L + + +P V V + +A + +GE I ++GFGSF ++ R Sbjct: 8 MNRGELVQSLVEE-TGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 RNPKTG++V + + FK G +L N Sbjct: 67 ARNPKTGEEVMITPRVSVKFKAGSDLLKELNE 98 >UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria RepID=Q01W44_SOLUE Length = 108 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K ++I + + + I E AV+ + E M L QG+RIE+RGFG F++ R Sbjct: 20 LIKLDIINEVVNR-TGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGI 78 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 GRNP+TG +V + FKPGKEL Sbjct: 79 GRNPRTGAEVSIPPGKAVRFKPGKEL 104 >UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bacteroides RepID=C6IG13_9BACE Length = 487 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T +LI+ LA + S + K E VKE + L + ++I+G G+F L R Sbjct: 5 LTIQDLIDLLAAKHS-MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRE 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 N TG++ +++G F P LRD N Sbjct: 64 SVNVNTGERFQIKGHTKVSFTPDTNLRDTINK 95 >UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA Length = 88 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL + +A S + AV + E +A+ +++ I GFG+FS R R Sbjct: 1 MNKGELTKAVAA-ASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRD 88 GRNP T + +++ K FKP L+D Sbjct: 60 GRNPATKETIKIPEKTSLAFKPASALKD 87 >UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae RepID=DBH_CAMJR Length = 98 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++ I +A Q + + K A ++ + LA+G+ I GFG+FS RA R Sbjct: 1 MTKADFISLVA-QTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 R P TG +++ V FK GK L++ Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNLKEAV 89 >UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUL7_9CAUD Length = 92 Score = 91.7 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++E + +A+ +I E V ++ + + +A G +++ GFG+F + ++ R Sbjct: 1 MNRTEFVAHIAS-TQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP G +++E K V FK G+ L++ AN Sbjct: 60 GRNPLNGQTIQIEAKNVVKFKVGEGLKNAAN 90 >UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP Length = 92 Score = 91.7 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI ++ + S++ +++ ++ L + +L G +++ GFG+F ++ RA R Sbjct: 1 MNKSELINIISKK-SNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG + + P F GK + Sbjct: 60 GRNPQTGQTIHISATKTPVFISGKTFKTAI 89 >UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria (class) RepID=DBH1_STRCO Length = 93 Score = 91.7 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQG-ERIEIRGFGSFSLHYRAPR 59 M +SEL+ LA + + + K + + E + +++G E++ I GF +F +RA R Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAAR 59 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDR 89 T RNP+TG+ +++ Y G +L++ Sbjct: 60 TARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89 >UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERD0_ACIF5 Length = 91 Score = 91.7 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K E + LA Q + E + + + L +I GF +F + + R Sbjct: 1 MNKLEFVAALA-QHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG ++++ K FK GKE D+ N Sbjct: 60 GRNPATGQEIDIPAKKSIKFKAGKEFADKVN 90 >UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZA3_PELTS Length = 92 Score = 91.3 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K + +E + ++ + A+ + E + A + +RGFG+F + R+PR Sbjct: 1 MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GR+ +TG + + K V FKPGK LR Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAV 90 >UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YLD8_THEYD Length = 94 Score = 91.3 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++L+ + ++ +P + V+ + E M L + E ++I GFG F++ + R Sbjct: 1 MTKADLVNFIF-ERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRI 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPKT VE++ + V F+P ++L+ Sbjct: 60 GRNPKTMQIVEIKPRKVVTFRPSEQLKQSIQKN 92 >UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 Tax=Bacteria RepID=D2Q2Y1_9ACTO Length = 97 Score = 91.3 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++EL+ +A + + IP E + + + + + +G+++ + G S RAPRT Sbjct: 1 MNRNELVAGVAAK-AGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 GRNP+TG+ + + Y G L+ Sbjct: 60 GRNPQTGEPLSIPAGYSVRLSCGSRLKAA 88 >UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 Tax=Desulfuromonadales RepID=B3EBV2_GEOLS Length = 93 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++LI+ +A QQ HI K V+E++ + +TL GE ++I FG F + + R Sbjct: 3 LTKNKLIQLVAEQQ-HITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARR 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG+ + +E + V FKP LR N Sbjct: 62 GRNPQTGEAITIEPRKVISFKPSVLLRQAIN 92 >UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHM4_DESMR Length = 92 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K ELI+ + + ++ + + V E + L G+R+E+RGFGSF++ T Sbjct: 1 MNKGELIKAVGEKY-NLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNPKTG KVE++ K +P FK G++ ++ N Sbjct: 60 GRNPKTGIKVEVKPKKIPFFKTGRDFKNYLNRE 92 >UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU3_9FIRM Length = 95 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K L + L+ Q ++ K AV + M+ LA ++I FG F + R R Sbjct: 5 VNKESLTQTLSIQL-NMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRM 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 G NP T +++ ++ +P F+P + L+++ N Sbjct: 64 GINPVTKERMMIQATKLPKFRPSQTLKNKCNK 95 >UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria RepID=DBH_SYNY3 Length = 100 Score = 90.5 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Query: 1 MTKSELIERLATQQSH-----IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHY 55 M K EL+ + + I K V+ + ++ + +A+GE++ + GFGSF Sbjct: 1 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60 Query: 56 RAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 R R GRNPKTGDK+ + VP F GK +D+ Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 95 >UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella RepID=A1S612_SHEAM Length = 91 Score = 90.5 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ L + +A + + + ++++L + L +GE + + FG+F L Y PR Sbjct: 1 MNKATLTKFIAN-TTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNPKTG+ +E+ G P FKP L+ Sbjct: 60 VRNPKTGELMEVAGFNQPSFKPAPALKQLI 89 >UniRef50_A8PM48 Integration host factor, beta subunit n=1 Tax=Rickettsiella grylli RepID=A8PM48_9COXI Length = 100 Score = 90.5 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 44/92 (47%), Positives = 57/92 (61%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSELI +L + + A TV+ +V+ +++ + TL QG RIEIRGFGSFSLHY A R+ Sbjct: 1 MLKSELINQLILKFPQLQASTVKKSVEHLIQLLEQTLHQGHRIEIRGFGSFSLHYNAARS 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 NPKT + KY HFK GK L+ N Sbjct: 61 AFNPKTKEHFLAPEKYRIHFKMGKTLKYCMNK 92 >UniRef50_A3ER44 Putative integration host factor, beta-subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ER44_9BACT Length = 98 Score = 90.5 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 56/90 (62%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+ +LI+R+A + + I + V ++ E M S + +GE +EIR FG F +H+R PR Sbjct: 1 MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+KV + + F+PGK L+ R Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRM 90 >UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=1 Tax=Persephonella marina EX-H1 RepID=C0QP77_PERMH Length = 95 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 51/90 (56%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+L+ L + ++ K + + E M L++G+++EIRG GSF + + R Sbjct: 1 MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNPKTG VE+ K V HFK GK L+ + Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKKL 90 >UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria RepID=B1Y0T8_LEPCP Length = 116 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 59/91 (64%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + KSELIE +A + + I A++ ++ + STL +G+ + + GFG+F++ RA R+ Sbjct: 27 VNKSELIEHIAEK-ADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARS 85 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG ++++ VP F+PGK L+D N Sbjct: 86 GRNPRTGAVIKIKSSKVPKFRPGKALKDSLN 116 >UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium RepID=C3WGU4_9FUSO Length = 92 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 45/92 (48%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E + L + E V + E M TL GE I I +G + RAPR Sbjct: 1 MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRL 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG++V + + F+PGK ++ N Sbjct: 61 GRNPKTGEEVNIGERKSVKFRPGKAFLEKLNK 92 >UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEN1_RHOVA Length = 245 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+++L E + + +P + V+ +L+ + L +GE I++ FGSF L ++ R Sbjct: 20 LTRADLAEAVFEK-VGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERV 78 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNPKTG+ V + + V FK ++DR N Sbjct: 79 GRNPKTGEIVPITPRRVIVFKASNIMKDRINA 110 >UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B569_METEA Length = 140 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT +EL LA + + ++ V+ L +A LA GE ++++GFG F + R R Sbjct: 45 MTLAELESVLAGRL-GLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARR 103 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 ++P+ G ++E+ + F+P + LR+ N Sbjct: 104 RKDPRDGRELEVPARRGAVFRPSRLLREALNRS 136 >UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8 Length = 96 Score = 89.8 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++L++++A Q + + K V+ V +L + LA G ++++ GFG+F + R RT Sbjct: 6 VTKADLVDQVA-QATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKART 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 G P T +K+++ P FKPGK L+D+ Sbjct: 65 GVKPGTKEKIKIPATQYPAFKPGKALKDKV 94 >UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS Length = 116 Score = 89.8 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK E+++ +A+Q + + V+E+++ +++ + +G IE+RGFG F R R Sbjct: 8 ITKKEIVDEIASQ-TGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERR 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNPKTG+ V + K P F+P K+L ++ N Sbjct: 67 TRNPKTGELVNIPAKVRPVFEPSKDLIEKIN 97 >UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Tax=Bacteria RepID=Q6KHG3_MYCMO Length = 108 Score = 89.8 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +LI +A + + K VE+ V LE ++S L ++I + FG F + RA R+ Sbjct: 18 ITKKDLIATIA-ENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARS 76 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NPKT + ++++ FK K L+D+ N Sbjct: 77 GINPKTSEIIQIKATKSVKFKVSKSLKDQVN 107 >UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YFH2_9BURK Length = 103 Score = 89.8 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 38/90 (42%), Positives = 52/90 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +S+LI +LA + + I K E AV+ + + MA+ L +G RIEIR FG R T Sbjct: 1 MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+K++ FK GKELR R Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSRM 90 >UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae RepID=Q1DCD2_MYXXD Length = 89 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+EL+E +A Q + + K+ + + ++ + + R GFG++S+ R R Sbjct: 1 MTKAELVEVVAAQ-TRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+T + ++L+ F+P KEL++ Sbjct: 60 IRNPQTNEMMKLKASKTIGFRPAKELKNSL 89 >UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKW1_METNO Length = 90 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +L++ +A + + + + + +L G+ + + G G + R Sbjct: 1 MNKPDLLKAIAAK-AGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 G NP+TG +++ + VP + L D N Sbjct: 60 GHNPRTGQPLQIPARLVPKLRASTTLHDALN 90 >UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE87_9FIRM Length = 84 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+++ +A + +I K E V +++ + +L+ GE +++ GFG+F L + R Sbjct: 1 MIKTDVARSIAEKL-NIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERA 59 Query: 61 GRNPKTGDKVELEGKYVPHFKP 82 RNPKTG+ V++ + P F+ Sbjct: 60 ARNPKTGETVQVPATHYPTFRA 81 >UniRef50_B7JAF9 Integration host factor, alpha subunit, putative n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7JAF9_ACIF2 Length = 107 Score = 89.0 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK ++ L + E V EHM + + +++ GFG F++ ++ R Sbjct: 3 ITKKDVANHL-WEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKTG E++ + V F LR ++N Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAKSN 92 >UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9J7_9PORP Length = 90 Score = 89.0 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K++ I+ +A + + + K + + ++E + + +GER+ + GFGSF + RA R Sbjct: 1 MNKTDFIKTVADK-AQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 G NP++G ++++ FKP L Sbjct: 60 GINPRSGKTIDIKASKSIKFKPSTAL 85 >UniRef50_C8X523 Histone family protein DNA-binding protein n=2 Tax=Desulfovibrionales RepID=C8X523_DESRD Length = 98 Score = 89.0 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+++++ + Q V++ V++ML+ M ++ + + I GFG F + + PR Sbjct: 6 LTKADIVDAIYEQ-GQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRK 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+T + + L G+ V F+ + R N Sbjct: 65 GRNPQTEEAITLPGRTVVVFRLSRRFRAELN 95 >UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR Length = 101 Score = 89.0 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 8/99 (8%) Query: 1 MTKSELIERLATQQSH--------IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFS 52 M K+E I + H E A+ +LE + S + I GFGSF Sbjct: 1 MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60 Query: 53 LHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 + R R GRNPKTG K+ + P FK G +L++ N Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACN 99 >UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBB5_TOLAT Length = 91 Score = 89.0 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +AT+ + ++A+ + + + L GE + I G G+FS+ +A R Sbjct: 1 MKKAELINAVATEM-NTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARL 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP+TG+ VE+ K FK K L D N Sbjct: 60 GRNPQTGETVEIAAKKTVKFKAAKALADAVNE 91 >UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi RepID=Q5LM20_SILPO Length = 91 Score = 88.6 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK++L+ LA KT A+ + + ++ G + + G G R R Sbjct: 1 MTKTQLVAALAEDM-GSDKKTASAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP TG+ V K L+D N Sbjct: 60 VRNPATGETFTKAADKVVKMTIAKALKDSVN 90 >UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q602W2_METCA Length = 95 Score = 88.6 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSH-IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPR 59 M +S+LI + + + ++ + + LA G+ + I G ++ RA R Sbjct: 1 MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 TGRNP+TG+ VE+ K V K L++R Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERV 91 >UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZB7_THERP Length = 92 Score = 88.6 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS+LI+ +A ++++ V V + + + TLA+GE + I GFG+F + RA R Sbjct: 1 MRKSDLIKVVA-ERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRR 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+T + +E+ + P F+PG +L+ Sbjct: 60 GRNPRTNEPIEIPARRSPSFRPGTQLKRAV 89 >UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides RepID=C6IB23_9BACE Length = 96 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +LI +A + S++ + + V+ ++E +A L QGE + + GFG+F + R R Sbjct: 1 MKKIDLIRSIAVK-SNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 G N TG+ + + GK FKPG ++ Sbjct: 60 GYNLSTGEIMTIPGKKTVRFKPGAKM 85 >UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus lactis RepID=Q02VJ4_LACLS Length = 103 Score = 88.2 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 6/96 (6%) Query: 1 MTKSELIERLATQQSHIPAK------TVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLH 54 + K EL + ++ + +I K + V + + L Q +I++ FG+F Sbjct: 2 VNKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKK 61 Query: 55 YRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RA R G NP+ G+++++ K VP FK GK L++ Sbjct: 62 TRASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97 >UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BW86_GRABC Length = 101 Score = 87.8 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M ++LI+++A + + TV+ V +E +++TL GE + I G G F + RA R Sbjct: 1 MNHADLIDKIA-KSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+TG +E+ F+ GK L+D N Sbjct: 60 GRNPQTGATIEIAATRAARFRAGKALKDAVN 90 >UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=Alphaproteobacteria RepID=IHFA_BRUA1 Length = 107 Score = 87.8 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+++L E + + + V+ +L+ + + GE +++ F +F + + R Sbjct: 6 VTRADLAEAVYRK-VGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERI 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNPKTG++V + + V FK L+ R Sbjct: 65 GRNPKTGEEVPILPRRVMTFKASNVLKQRI 94 >UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AIP7_9PORP Length = 91 Score = 87.8 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M +S+LI LA Q++ + K V+ + EM + + + +G+RI + GFGSF +++ R Sbjct: 1 MNRSQLINILA-QKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRP 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 RN K G V+L + + HFK L ++ N Sbjct: 60 ARNLKNGTAVQLSPRTIIHFKCAPHLLEQMNK 91 >UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobacteria RepID=A6Q378_NITSB Length = 91 Score = 87.8 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+E ++ +A + + + K + + LE + L G+ + GFG+F+ RA R Sbjct: 1 MKKAEFVQIVAEK-AGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAARE 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 + P T V++ V FK GK+L++ Sbjct: 60 AKVPGTDRVVKVPATRVVKFKVGKKLKEAV 89 >UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales RepID=A4X4D0_SALTO Length = 237 Score = 87.8 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K+ELIE LA + KT A+ +L + + + +GE++ I GFG+F R RT Sbjct: 18 VNKAELIETLAVRLGD--RKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGART 75 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ V+++ VP F+PG ++ Sbjct: 76 ARNPRTGEAVKVKKTSVPTFRPGTGFKEMV 105 >UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AA8F Length = 97 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK ELI +A +++ I VE A+ + T+A G+ I IRGFG+ S R + Sbjct: 1 MTKQELINTIA-ERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 RN G V + VPHFKP K + + N Sbjct: 60 ARNITAGTSVVVPETIVPHFKPCKAFKGQVNE 91 >UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NU55_BACSE Length = 101 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL++ +A + + + K + ++ + + + ++ + GFG+F + + R Sbjct: 1 MNKKELVDAIAEE-TGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARR 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKEL 86 G NP T +E+ K V +F+P L Sbjct: 60 GMNPSTFVPIEIPAKRVVYFRPSAYL 85 >UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001969776 Length = 471 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + LIE LA + + E VKE + + +L + ++IRG G+F L R Sbjct: 5 LNIQNLIELLAEKH-GMDKADAESFVKEFFQLIEESLENDKYVKIRGLGTFKLIDVESRE 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 N TG++ E++G F P L+D N Sbjct: 64 SVNINTGERFEIQGHTKVSFAPEPALKDLINK 95 >UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q201_9BACT Length = 103 Score = 87.1 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 TK +L E++A + + V+ ++ L+ + L+QG RIE+R FG F + RA R Sbjct: 5 TKRDLCEKIARKTDN-THMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARKA 63 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ + K V FK GK +R++ Sbjct: 64 RNPRTGEVAFVPSKNVVVFKVGKLMREKV 92 >UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W7Q9_KINRD Length = 179 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 2/90 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+E+++ L + K AV+ ++E + T+A+G+++ I GFG+F R RT Sbjct: 1 MNKAEMVDALEARLGG--RKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNART 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG+ V+++ VP F+PG ++ Sbjct: 59 GRNPRTGEAVKIKKTSVPRFRPGTAFKEIV 88 >UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYJ3_9DELT Length = 97 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+ +L + + ++ ++ D V + + + +TL E I++ FG+F++ ++PR Sbjct: 6 LTRKDLAKAI-NEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQ 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+TGD +E+ + + F+P K +R+R N Sbjct: 65 GRNPRTGDPMEISKRSMISFRPSKSVRERINRR 97 >UniRef50_C6HZV1 Putative integration host factor, alpha subunit HimA like protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZV1_9BACT Length = 104 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 1 MTKSELIERLATQQSH--IPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M +++++E +P K V +A+ ++E + +++ GE +++ GFG+F + R Sbjct: 1 MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKEL 86 R GRNPKTG+ + ++ V F+P + Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRPTRHF 88 >UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacteridae RepID=DBH1_BIFLO Length = 93 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 KS+L+ ++A Q+S++ E AV + + GE +++ G S RA RTG Sbjct: 4 NKSDLVSKIA-QKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTG 62 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+++++ Y G L+ Sbjct: 63 RNPRTGEQIDIPASYGVRISAGSLLKKAV 91 >UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q2LW81_SYNAS Length = 91 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K +L+E + K ++ V +L+ M L +GE + + GFG+F + R+ RT Sbjct: 1 MNKGDLVEAVTKVVGK--KKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSART 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG ++++ K VP F GK+L++ Sbjct: 59 GRNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88 >UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=A5VG36_SPHWW Length = 92 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M S+L + LA + AV + +A A+GE + + GFG F + R Sbjct: 2 MNNSDLADHLAG-ATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLARE 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP TG+ +++ F K ++DR N Sbjct: 61 GRNPATGETIKIAASKKLSFSVAKAVKDRLN 91 >UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A5ZCF1_9BACE Length = 435 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T +L + LA + S + K E VKE + L + ++I+G G+F L R Sbjct: 5 LTIQDLTDLLAAKHS-MTKKDAEVFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRE 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 N TG++ +++G F P LRD N Sbjct: 64 SVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95 >UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWF3_VESOH Length = 109 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK ++ L + I + + + TLA GE +++ FG+F + ++ R Sbjct: 3 ITKKDIANVLV-KSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRV 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNPKTG+ VE+ + V FK G +L+ G Sbjct: 62 GRNPKTGEMVEISARRVVVFKSGPKLKLATQKDG 95 >UniRef50_A6L5E9 Putative integration host factor IHF alpha subunit n=6 Tax=Bacteroides RepID=A6L5E9_BACV8 Length = 476 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T ++IE LA + S + K E VK M E + L + ++++G G+F L R Sbjct: 5 VTIQDIIELLAEKHS-MTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVESRE 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 N TG+++E++G F P ++D N Sbjct: 64 SVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95 >UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax=Deinococcus RepID=Q1J3J9_DEIGD Length = 149 Score = 86.3 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGR 62 K++L++ +A + + + K E+AV ML + + QG+ + + G G+ S+ A RTG Sbjct: 53 KTQLVDMVADK-TGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGV 111 Query: 63 NPKTGDKVELEGKYVPHFKPGKELRDRA 90 P T +++++ FK L+ Sbjct: 112 RPGTSERIQIPAGKKVAFKVASTLKSSL 139 >UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QR54_PERMH Length = 96 Score = 86.3 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 4/94 (4%) Query: 1 MTKSELIE-RLATQQSHIPAKTVEDAVKEMLEHMASTLAQGE---RIEIRGFGSFSLHYR 56 MTK+E++E L + + K V D V + E + L GE +++I GFG+F + R Sbjct: 1 MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60 Query: 57 APRTGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 AP+ GRNPKT ++ + ++ FK GK L++ Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKESL 94 >UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 Tax=Desulfovibrionales RepID=B8DRW9_DESVM Length = 97 Score = 85.9 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+E+++ + + + V+ V+ +L M + + + I GFG F + + R Sbjct: 6 LTKAEIVDAIYEK-TDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARK 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNP+T + + L + V F+ ++ R N Sbjct: 65 GRNPQTDETITLPPRKVVVFRLSRKFRAELN 95 >UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S3Z3_OSTLU Length = 115 Score = 85.9 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + K+ LI+ +A + + +V + L+ +++T+ G+++ + FG+F+ R R Sbjct: 23 LNKTTLIDHVAKE-TGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARD 81 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP TG +++ P F +D Sbjct: 82 GRNPLTGAALKIPAANYPSFSASSTFKDLV 111 >UniRef50_A7HII4 Histone family protein DNA-binding protein n=4 Tax=Anaeromyxobacter RepID=A7HII4_ANADF Length = 123 Score = 85.9 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MT+++ + +A + + + V + + + + L +I + G G+ L R R Sbjct: 29 MTQAQFFQAVA-EGAQLSKAQVRQVFQAVEDVVTKKLKGEGKIPLGGLGAVKLVDRKARI 87 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG 94 GRNP TG+++++ + P K L+D N G Sbjct: 88 GRNPATGEQIKIPARTAIKITPAKGLKDIFNKKG 121 >UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales RepID=A6L5T8_BACV8 Length = 94 Score = 85.9 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+EL ++++ + + A+T+ V+ ++ + +L +GE + +RGFGSF + RA +T Sbjct: 1 MTKAELCKKISAK-TGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 RN + + +P FKP KEL N Sbjct: 60 TRNISKNTTIIIPAHNIPAFKPSKELVKLVNK 91 >UniRef50_A5CZB4 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZB4_PELTS Length = 89 Score = 85.9 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K EL+ LA + + + + + + + + S + G + G G+F R PR Sbjct: 1 MRKYELVRLLAAE-TGVTQGQAKAVLDALPDVVLSLVQAGHPVRFAGLGTFQAVTRQPRK 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RN +TG+ V + + + F+ ++ R Sbjct: 60 ARNLQTGEPVMVPARRMLSFRAERKYRKGV 89 >UniRef50_A8PMN2 Integration host factor subunit alpha (IHF-alpha) n=1 Tax=Rickettsiella grylli RepID=A8PMN2_9COXI Length = 102 Score = 85.5 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 40/83 (48%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK++LI L Q+S + V E + L QGE ++I G G F + R Sbjct: 4 LTKADLIHSLRQQESSLSRLVANKLVDAFFEQIMFALEQGESVKISGLGRFRRRLKKERP 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPG 83 GRNP+TG ++ + V F+ Sbjct: 64 GRNPQTGVTTQVSSRNVVLFQAS 86 >UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria RepID=DBH_MYCS2 Length = 208 Score = 85.5 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI+ L T+ + AV+ +++ + + +G+ + I GFG F RA R Sbjct: 1 MNKAELIDVLTTKM-GTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ V+++ VP F+PG + + Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVI 89 >UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaproteobacteria RepID=B9K3N0_AGRVS Length = 92 Score = 85.5 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 T +E+ +++A +Q ++P + V+ + + + G I FG F L R G Sbjct: 3 TTNEIADKIAAEQ-NLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREG 61 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RNP TG +++ F PGK ++D N Sbjct: 62 RNPATGATIKIAASKKLTFTPGKAVKDALN 91 >UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3C8S3_9BACE Length = 433 Score = 85.5 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + LIE LA + + E VKE + + +L + ++I+G G+F L R Sbjct: 5 LNIQNLIELLAEKH-GMDKTDAESFVKEFFQLIEESLESDKYVKIKGLGTFKLIDVDSRE 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 N TG++ E++G F P L+D N Sbjct: 64 SVNINTGERFEIQGHTKVSFTPEPTLKDLINK 95 >UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XF17_LIBAP Length = 114 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +T+S+L++ ++ + + K V + + + +GE I+I F +F + + R Sbjct: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRN +T +V+++ + V FK L+ R Sbjct: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 >UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomycetales RepID=DBH_MYCBO Length = 214 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI+ L + + AV+ +++ + + +G+ + I GFG F RA R Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ V+++ VP F+PG + + Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89 >UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidum RepID=DBH_TREPA Length = 105 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61 T+S +++ L + + + V V + + + L +GE +E+R FG F R G Sbjct: 7 TRSFVVDALCDE-VDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVG 65 Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRA 90 ++ KTG+ V + V F+P K L+ Sbjct: 66 KSIKTGEVVSIPSHCVVVFRPSKRLKSAV 94 >UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteria RepID=B0SI26_LEPBA Length = 101 Score = 85.1 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KSE++ LA + + + K V + +E + I G G R R Sbjct: 8 MKKSEMLSELA-ETTGMTKKNVAAFLDSFVELAYKETKKNGAFVIPGLGKLVKRNRPKRK 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP TG+ + + K V F K +D Sbjct: 67 GRNPATGEAIVIPAKTVVKFTLSKTCKDAV 96 >UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BF96_9PORP Length = 99 Score = 85.1 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+E++ R+A Q + + V + V+ +E + + +G + +RGFGSF + +RA + Sbjct: 1 MTKAEIVARIAKQ-TGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 RN + + +P FKP K D N Sbjct: 60 ARNISQNTTIVIPAHSIPAFKPSKAFADMVN 90 >UniRef50_UPI0001699D1F integration host factor, beta subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699D1F Length = 122 Score = 85.1 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 43/67 (64%), Positives = 51/67 (76%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTKSELIE + QSH+ + +E A+K M+E M+ L+ GERIEIRGFGSFSLHYR PR Sbjct: 1 MTKSELIEIVRKDQSHLAYRDIELAIKCMIEQMSQALSSGERIEIRGFGSFSLHYRPPRM 60 Query: 61 GRNPKTG 67 GRNPK G Sbjct: 61 GRNPKNG 67 >UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae RepID=C6X423_FLAB3 Length = 96 Score = 84.8 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLA-QGERIEIRGFGSFSLHYRAPR 59 M KSELI+ +A + I + A++ + ++ +TL+ + ++ + GFG+FS+ RA R Sbjct: 1 MNKSELIDAMAND-AGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAAR 59 Query: 60 TGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 G NP T +++ K V FK G +L Sbjct: 60 QGINPATKKPIKIAAKTVAKFKAGADLAGSV 90 >UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XGD8_DESMR Length = 100 Score = 84.8 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+++++ + + + V+ V +LE M ++ + + + GFG F + + R Sbjct: 6 LTKADIVDYIYEK-TERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKARK 64 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP+T + L + V F+ ++ R N Sbjct: 65 GRNPQTNASIMLPPRKVVVFRLSRKFRAELNPD 97 >UniRef50_C6XFR8 Integration host factor, beta subunit n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFR8_LIBAP Length = 100 Score = 84.8 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 40/91 (43%), Positives = 52/91 (57%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R Sbjct: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 R P + +E K VP F+ GK L++R N Sbjct: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91 >UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium RepID=C3WAE9_FUSMR Length = 106 Score = 84.8 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 43/91 (47%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E +E + E K LE + L +G+ + GFG F RA RT Sbjct: 1 MTKKEFVELFGAKAELKTKVEAEKLTKAFLETLEEVLVKGDSVAFIGFGKFEAAKRAERT 60 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 NP+T +++ + V FKPGK L ++ N Sbjct: 61 CINPQTKKPMKIAARKVAKFKPGKNLLEKMN 91 >UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 Tax=cellular organisms RepID=B9LTH2_HALLT Length = 206 Score = 84.8 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 12/96 (12%) Query: 7 IERLATQ-----QSHIPAKTVEDAVKEMLEHMASTLAQGERIEI-------RGFGSFSLH 54 + +A++ + + A++ + L +G+R+ + +GFG+FS+ Sbjct: 110 AKYIASETRRNSHEGLSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSIS 169 Query: 55 YRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 R+ RTGRNP+TG ++++ K V FK G EL Sbjct: 170 KRSARTGRNPQTGKEIQIAAKNVVKFKAGAELSKAV 205 Score = 75.5 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELIE +A++ S + + A+ + L +G+ + GFGSFS+ R+ RT Sbjct: 1 MNKAELIESMASE-SGLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSART 59 Query: 61 GRNPK 65 GRNP Sbjct: 60 GRNPS 64 >UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 Tax=Fusobacteriaceae RepID=C7N8X2_LEPBD Length = 93 Score = 84.8 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M+K E ++ A + + K E+ V + L+ + +L +G+ ++ G+G+F + RA RT Sbjct: 1 MSKKEFVDAYA-KATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAART 59 Query: 61 GRNPKTGDKVELEG 74 G NP+T +++++ Sbjct: 60 GINPQTKEEIQIPE 73 >UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI67_DESAH Length = 108 Score = 84.8 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK+E+ ER + I T D +++ LE + TL QGE + I GFG F ++ + R Sbjct: 3 LTKTEITERF-QKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARK 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 GRNP T +++ L + V FK +LR+ N Sbjct: 62 GRNPATSEEMILPARRVITFKCSGKLRNLINTS 94 >UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ83_PELPD Length = 126 Score = 84.8 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+EL+ ++A + + + E + + + L G+++ I GFG+FS R RT Sbjct: 1 MNKTELVAKIA-EGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKART 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 GRNP+TG +++ K F PGK L+D Sbjct: 60 GRNPQTGKALQIAEKTNGKFTPGKALKDL 88 >UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JSK6_RHOER Length = 183 Score = 84.8 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI+ L + +T DAV+ +++ + + +GE + I GFG F RA R Sbjct: 1 MNKAELIDVLTEKL-GSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARV 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP+TG+ V+++ VP F+PG + + Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVI 89 >UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EV14_9RHOB Length = 94 Score = 84.8 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 + S LI +A + S + V+ + + E + G I G G F RA R Sbjct: 4 LNYSGLIRAIAEETSQ-SQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERAARK 62 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP TG ++E+ FKP K +DR N Sbjct: 63 GRNPSTGVEIEIAASSSLSFKPAKAAKDRLNA 94 >UniRef50_A3EV93 Putative integration host factor, alpha subunit HimA like n=2 Tax=Leptospirillum sp. Group II RepID=A3EV93_9BACT Length = 98 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLAT--QQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M + ++++R+ + S AK V +LE +++TL GE ++I GFG+F + Sbjct: 1 MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRDR 89 R GRNPKTG+ V + + F P + L Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSLLKA 91 >UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=A0LVA1_ACIC1 Length = 163 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M K+ELI +A + KT +AV+ +++ + T+A+GE++ I GFG F RA R Sbjct: 1 MNKAELITAVAARIGD--KKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARM 58 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 RNP TG++V ++ VP F+ G L+ Sbjct: 59 ARNPATGERVRVKKTSVPKFRAGTRLKGVV 88 >UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=Magnetospirillum RepID=Q2WAF5_MAGSA Length = 89 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 M+KS + + + Q + + AV+ +L + + R + GFGSFS R R Sbjct: 1 MSKSAMSKAI-RQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQ 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRA 90 GRNP+TG +++ F L+ Sbjct: 60 GRNPRTGKTIDIAASTSIKFSTSAALKKSL 89 >UniRef50_C9MQK2 Putative integration host factor IHF alpha subunit n=1 Tax=Prevotella veroralis F0319 RepID=C9MQK2_9BACT Length = 376 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 1 MTKS--ELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAP 58 M K+ ++I +Q + A V ++ L +G +++I+G G+F + P Sbjct: 1 MAKTVIQIIASALAKQYKLSAADGATFVDTFFAIISDELKKGNQVKIKGLGTFKVQRVKP 60 Query: 59 RTGRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 R N TG++V +EG F P +++ N Sbjct: 61 RESVNVNTGERVLIEGHDKVSFTPDAAMKELVNK 94 >UniRef50_Q1V1Q3 Integration host factor beta-subunit (IHF-beta) n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1V1Q3_PELUB Length = 96 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 51/91 (56%) Query: 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGR 62 KS+L+++LA + K +E +L + L +G+R+E+RGFG FS + + R R Sbjct: 5 KSKLLKQLANNYPNFLKKDLEKFTDIILTEIKQALKRGDRVELRGFGMFSTNIQKARISR 64 Query: 63 NPKTGDKVELEGKYVPHFKPGKELRDRANIY 93 NPKTG+KV K HFK KE+ + N Sbjct: 65 NPKTGEKVNTPEKKTIHFKMSKEMFKKLNND 95 >UniRef50_D1XWL2 DNA-binding protein HU n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1XWL2_9BACT Length = 443 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 6 LIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPK 65 L +A + + V+ + + + L +++I+G G+F + PR N Sbjct: 9 LAIAIAKKY-KLSNVDATKFVEAIFDIVTEELKNNGQVKIKGLGTFKVQSVKPRESVNVN 67 Query: 66 TGDKVELEGKYVPHFKPGKELRDRANI 92 TG++V +EG F P +++ N Sbjct: 68 TGERVLIEGHDKISFTPDATMKELVNK 94 >UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus Pelagibacter RepID=Q4FLU7_PELUB Length = 102 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +LI + Q E+ + + L + L +++++ FG+FS+ + R Sbjct: 8 LTKKDLINSIYMQI-GFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRI 66 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 GRNPKT ++ + + V FK KE +D N Sbjct: 67 GRNPKTKEQTTISNRDVVLFKASKEFKDLVN 97 >UniRef50_C6JJT3 Predicted protein n=4 Tax=Fusobacterium RepID=C6JJT3_FUSVA Length = 111 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 44/91 (48%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK E +E T+ + K ++ + L +GE + GFG F RA RT Sbjct: 6 MTKKEFVELFGTKAGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAART 65 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 NP+T +++E K V F+ GK L ++ N Sbjct: 66 CVNPQTKKPMKVEAKKVAKFRAGKNLLEKMN 96 >UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMR7_AKKM8 Length = 101 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 2/91 (2%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +L+ +++ + ++ V D V+ ++ ++STLA+G+R+ IR FG+F + P+ Sbjct: 5 LTKRDLVNKISAE-TNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVKPKV 63 Query: 61 GRNPKTG-DKVELEGKYVPHFKPGKELRDRA 90 GRNPK V + + V FK GKEL+D+ Sbjct: 64 GRNPKNPDQDVPIPARSVVKFKVGKELKDQV 94 >UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 Tax=cellular organisms RepID=Q4ZXI2_PSEU2 Length = 93 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 +TK +LI +A + P T A++++ +A L +G I + G + R RT Sbjct: 3 LTKDQLIADIA-EAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPART 61 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 GRNP TG +E+ K V F P K L D N Sbjct: 62 GRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93 >UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A5S4_MYCS5 Length = 91 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 MTK+E I+ ++ + + + + + + L GE++++ G F + RA RT Sbjct: 1 MTKTEFIKAVSDK-TGLTVGELNRVFDGFVYVLQEQLVAGEKVQLSNLGIFDVATRAERT 59 Query: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANI 92 +N TG + + K V +KP K L D N Sbjct: 60 IKNHFTGKEQVVAAKKVVKYKPSKYLTDVVNE 91 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.172 0.493 Lambda K H 0.267 0.0531 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 675,826,773 Number of Sequences: 3077464 Number of extensions: 26744577 Number of successful extensions: 64152 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1237 Number of HSP's successfully gapped in prelim test: 229 Number of HSP's that attempted gapping in prelim test: 62292 Number of HSP's gapped (non-prelim): 1480 length of query: 94 length of database: 1,040,396,356 effective HSP length: 63 effective length of query: 31 effective length of database: 846,516,124 effective search space: 26241999844 effective search space used: 26241999844 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.3 bits) S2: 88 (38.1 bits)