BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (97 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P26477 Negative regulator of flagellin synthesis n=133 ... 154 6e-37 UniRef50_A1JT31 Negative regulator of flagellin synthesis n=8 Ta... 111 7e-24 UniRef50_A8GG33 Anti-sigma-28 factor, FlgM n=4 Tax=Enterobacteri... 107 1e-22 UniRef50_C6C358 Anti-sigma-28 factor, FlgM n=1 Tax=Dickeya dadan... 90 2e-17 UniRef50_P96974 Negative regulator of flagellin synthesis n=6 Ta... 73 2e-12 UniRef50_D1NZL0 Negative regulator of flagellin synthesis n=4 Ta... 63 2e-09 UniRef50_Q2NR89 Negative regulator of flagellin synthesis FlgM n... 62 5e-09 UniRef50_B2T7A3 Anti-sigma-28 factor, FlgM n=5 Tax=Burkholderia ... 54 1e-06 UniRef50_D2TYH3 Flagella synthesis protein FlgM n=1 Tax=Arsenoph... 51 1e-05 UniRef50_B2UJX6 Anti-sigma-28 factor, FlgM n=5 Tax=Ralstonia Rep... 49 4e-05 UniRef50_A9IKP4 Negative regulator of flagellin synthesis n=1 Ta... 49 5e-05 UniRef50_A9ABN9 Negative regulator of flagellin synthesis n=14 T... 43 0.004 UniRef50_C4KMX4 Anti-sigma-28 factor, FlgM n=33 Tax=Burkholderia... 43 0.004 UniRef50_Q1QW26 Anti-sigma-28 factor, FlgM n=1 Tax=Chromohalobac... 42 0.004 UniRef50_C4KAU9 Anti-sigma-28 factor, FlgM n=1 Tax=Thauera sp. M... 42 0.006 UniRef50_B2JR17 Anti-sigma-28 factor, FlgM n=1 Tax=Burkholderia ... 42 0.007 UniRef50_Q2L1C2 Negative regulator of flagellin synthesis n=4 Ta... 41 0.010 UniRef50_A4SI21 Lateral flagella anti-sigma-28 factor, LfgM n=2 ... 40 0.016 UniRef50_Q46PG6 Anti-sigma-28 factor, FlgM n=3 Tax=Cupriavidus R... 40 0.018 UniRef50_A0Z350 Putative uncharacterized protein n=1 Tax=marine ... 40 0.024 UniRef50_D0FQ39 Negative regulator of flagellin synthesis (Anti-... 40 0.031 UniRef50_A1T0L6 Anti-sigma-28 factor, FlgM n=1 Tax=Psychromonas ... 39 0.072 >UniRef50_P26477 Negative regulator of flagellin synthesis n=133 Tax=Enterobacteriaceae RepID=FLGM_SALTY Length = 97 Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 78/97 (80%), Positives = 84/97 (86%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 MSIDRTSPLKPVSTVQ RET+D PV +R KT+A+TS SVTLSDAQAKLMQPG SDIN+ Sbjct: 1 MSIDRTSPLKPVSTVQTRETSDTPVQKTRQEKTSAATSASVTLSDAQAKLMQPGVSDINM 60 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 ERVEALK AIRNGELKMDTGKIAD+LI EAQ LQS Sbjct: 61 ERVEALKTAIRNGELKMDTGKIADSLIREAQSYLQSK 97 >UniRef50_A1JT31 Negative regulator of flagellin synthesis n=8 Tax=Enterobacteriaceae RepID=FLGM_YERE8 Length = 99 Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 62/99 (62%), Positives = 75/99 (75%), Gaps = 2/99 (2%) Query: 1 MSIDRTSPLKPVSTVQPRETTD-APVTNSRAAKT-TASTSTSVTLSDAQAKLMQPGSSDI 58 MSIDRT PL PV+ VQPRET+D A T +A++ T + T V LSDAQAKLMQPGS DI Sbjct: 1 MSIDRTQPLLPVTPVQPRETSDIAQQTRKPSAQSKTPVSGTEVKLSDAQAKLMQPGSQDI 60 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 N+ERVE LK AIR+G+L MDTGKIADAL+ DL+++ Sbjct: 61 NVERVETLKQAIRSGQLTMDTGKIADALLKNVADDLKNS 99 >UniRef50_A8GG33 Anti-sigma-28 factor, FlgM n=4 Tax=Enterobacteriaceae RepID=A8GG33_SERP5 Length = 108 Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/100 (59%), Positives = 69/100 (69%), Gaps = 8/100 (8%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTAST-----STSVTLSDAQAKLMQPGS 55 MSIDRT L+PV TVQ RET P N + TA T T V LSDAQA+LMQPG+ Sbjct: 1 MSIDRTQRLQPVPTVQARET---PAENQLQPRKTAQTESAVSGTQVKLSDAQARLMQPGT 57 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 DI++ RV+A+K AIRNGELKMD GKIADAL+ + Q D Q Sbjct: 58 QDIDMNRVDAIKQAIRNGELKMDAGKIADALLQDVQSDAQ 97 >UniRef50_C6C358 Anti-sigma-28 factor, FlgM n=1 Tax=Dickeya dadantii Ech703 RepID=C6C358_DICDC Length = 97 Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/100 (48%), Positives = 70/100 (70%), Gaps = 9/100 (9%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTAST------STSVTLSDAQAKLMQPG 54 MSID T P+ V ++Q + D+ + S KT++ T T V LS+AQ++LMQP Sbjct: 1 MSIDSTRPVSGVKSIQNK---DSGLLQSTKGKTSSVTDNSETEQTQVNLSEAQSRLMQPS 57 Query: 55 SSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 S DI+LE+VE++K AI++G+L++D GKIADAL+NEAQ D+ Sbjct: 58 SQDIDLEKVESIKQAIKDGKLQIDVGKIADALLNEAQSDI 97 >UniRef50_P96974 Negative regulator of flagellin synthesis n=6 Tax=Enterobacteriaceae RepID=FLGM_PROMI Length = 99 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 3/97 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRA--AKTTA-STSTSVTLSDAQAKLMQPGSSD 57 MSI+RT+PL P++ + R + + A+T A + TSV LS+AQ KL+QP + D Sbjct: 1 MSIERTNPLIPITAISQRNLNEGAQEARKTGNAQTKAMAGDTSVKLSEAQKKLVQPSNQD 60 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 IN+E+V LK AI +G L MD+ KIA+AL EA + + Sbjct: 61 INVEKVARLKAAIADGTLTMDSSKIAEALFREAAESI 97 >UniRef50_D1NZL0 Negative regulator of flagellin synthesis n=4 Tax=Providencia RepID=D1NZL0_9ENTR Length = 100 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 2/98 (2%) Query: 1 MSIDRTSPLKPVSTVQPRETTDA--PVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDI 58 M+I++TS + ++ V R+ DA P+ + + + A +S S+ Q KL+QP ++DI Sbjct: 1 MAIEQTSAISALTQVTTRDPQDATAPMRDKKISANEAVKESSFAPSELQKKLLQPQATDI 60 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQS 96 + +VE +K AI++G L MD GKIAD ++ +A + + S Sbjct: 61 DTAKVEKIKQAIKDGTLTMDAGKIADGILRDAHECMLS 98 >UniRef50_Q2NR89 Negative regulator of flagellin synthesis FlgM n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NR89_SODGM Length = 104 Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 14/102 (13%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTAS-----------TSTSVTLSDAQAK 49 MSI+ + +PV ++ P + D ++ KT AS ++V+LSD + Sbjct: 1 MSIESS---RPVQSLAPLQNIDGNTVQAQKNKTAASARNQENQENQENQSTVSLSDTLDQ 57 Query: 50 LMQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQ 91 L + S DI++ +VE +K AIR+G L MD+GKIADALI++AQ Sbjct: 58 LQKQDSQDIDVAKVERIKDAIRDGSLTMDSGKIADALISQAQ 99 >UniRef50_B2T7A3 Anti-sigma-28 factor, FlgM n=5 Tax=Burkholderia RepID=B2T7A3_BURPP Length = 117 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 33 TTASTSTSVTLSDAQAKLMQ---PGSSDINLERVEALKLAIRNGELKMDTGKIADALINE 89 T+ S SV+LS L GS+DI+ VE++K AI++G LK+D+GKIAD ++N Sbjct: 44 TSGSGGASVSLSGLSQHLRSLAASGSADIDTAHVESIKQAIKDGSLKIDSGKIADGVLNT 103 Query: 90 AQQDLQS 96 A++ LQS Sbjct: 104 ARELLQS 110 >UniRef50_D2TYH3 Flagella synthesis protein FlgM n=1 Tax=Arsenophonus nasoniae RepID=D2TYH3_9ENTR Length = 97 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 8/92 (8%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTST-----SVTLSDAQAKLMQPGS 55 MSI++T+PL ++ + E P + K +A++ +++LS A KL+Q + Sbjct: 1 MSIEKTTPLSGITALSHHE---EPQPQQKKVKQSATSEQKDPIFTLSLSGAAEKLLQANN 57 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALI 87 DI ++VE ++ I +GEL D KIAD LI Sbjct: 58 KDIREQKVEQIRQKIEHGELTTDAEKIADVLI 89 >UniRef50_B2UJX6 Anti-sigma-28 factor, FlgM n=5 Tax=Ralstonia RepID=B2UJX6_RALPJ Length = 106 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 9/84 (10%) Query: 20 TTDAPVTNSRAAKTT-ASTSTSVTLSDA--------QAKLMQPGSSDINLERVEALKLAI 70 T DA ++RAA TT AST+ S + + Q Q GS D + RVE ++ AI Sbjct: 16 TKDATSGSTRAASTTPASTAASGSARHSGDTPSLSVQRVSRQVGSGDFDAARVEQIRSAI 75 Query: 71 RNGELKMDTGKIADALINEAQQDL 94 ++G LKMD GKIADA ++ AQ L Sbjct: 76 QSGTLKMDAGKIADAALSAAQSLL 99 >UniRef50_A9IKP4 Negative regulator of flagellin synthesis n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IKP4_BORPD Length = 120 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%) Query: 10 KPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLM--QPGSSDINLERVEALK 67 +PV P D P + + ++ +TS V LS A +L+ Q GSSDI++ERV A++ Sbjct: 33 RPVGAQAPGGRADTPAGAAPSTASSGATSAQVALSPASRQLLALQDGSSDIDVERVAAIR 92 Query: 68 LAIRNGELKMDTGKIADALINEAQ 91 AI +G+L++D G+IAD+LI A+ Sbjct: 93 AAIASGQLQIDAGRIADSLIASAR 116 >UniRef50_A9ABN9 Negative regulator of flagellin synthesis n=14 Tax=Burkholderia RepID=A9ABN9_BURM1 Length = 112 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 10/105 (9%) Query: 1 MSIDRT---SPLKPVST----VQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ- 52 M ID T SP+ P ST +P+ A + +A +V LS +L Sbjct: 1 MKIDTTPNPSPVAPASTGNGAARPQSGAAASTAPQASDAGSAGGDATVNLSGLSGQLRAQ 60 Query: 53 --PGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 G +DI++ V+++K A+++G L +D KIAD ++N A++ LQ Sbjct: 61 SASGGADIDMGLVQSIKDALKDGTLTIDANKIADGVLNTARELLQ 105 >UniRef50_C4KMX4 Anti-sigma-28 factor, FlgM n=33 Tax=Burkholderia RepID=C4KMX4_BURPS Length = 114 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 31/42 (73%) Query: 50 LMQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQ 91 L GS+DI+ +V+A++ AI++G L +DTGKIAD ++ A+ Sbjct: 61 LAASGSADIDTAQVDAIRDAIKSGTLSIDTGKIADGILQTAR 102 >UniRef50_Q1QW26 Anti-sigma-28 factor, FlgM n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QW26_CHRSD Length = 118 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 27/34 (79%) Query: 55 SSDINLERVEALKLAIRNGELKMDTGKIADALIN 88 S DI++ RV ++ AI +G+L++DTGKIAD LI+ Sbjct: 73 SQDIDVGRVAEIRQAISDGQLELDTGKIADGLID 106 >UniRef50_C4KAU9 Anti-sigma-28 factor, FlgM n=1 Tax=Thauera sp. MZ1T RepID=C4KAU9_THASP Length = 99 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 27/37 (72%) Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 ++ +RVE +K AI NGE ++D G+IAD LI+ ++ L Sbjct: 59 VDAQRVEEIKQAIANGEFRIDAGRIADGLIDSVREML 95 >UniRef50_B2JR17 Anti-sigma-28 factor, FlgM n=1 Tax=Burkholderia phymatum STM815 RepID=B2JR17_BURP8 Length = 100 Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 14/76 (18%) Query: 21 TDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTG 80 TDAP++ S +T S ST T SDA DI+ +VE++K A+R+G +D+ Sbjct: 36 TDAPLSGS----STVSLSTLPTASDA----------DIDTAQVESIKAALRDGTYTVDSS 81 Query: 81 KIADALINEAQQDLQS 96 KIAD +++ A+ LQ+ Sbjct: 82 KIADGMMSNARDLLQT 97 >UniRef50_Q2L1C2 Negative regulator of flagellin synthesis n=4 Tax=Bordetella RepID=Q2L1C2_BORA1 Length = 95 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 42/59 (71%), Gaps = 2/59 (3%) Query: 36 STSTSVTLSDAQAKLM--QPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQ 92 ++S+ V LS A +L+ Q G SDI++ERV A++ AI G+L++D +IAD+LI A++ Sbjct: 34 ASSSQVALSGASRQLLALQEGGSDIDVERVAAIRAAIAAGQLRIDPSRIADSLIASAKE 92 >UniRef50_A4SI21 Lateral flagella anti-sigma-28 factor, LfgM n=2 Tax=Aeromonas RepID=A4SI21_AERS4 Length = 91 Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 5/90 (5%) Query: 1 MSIDRTSPLKPVSTVQ--PRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDI 58 M I RT PL + +Q P T P +RA++ A ST+ + QA+ +SD+ Sbjct: 1 MKITRTDPLYVQTQLQRKPESATTQP--QARASQADAQISTTAQFVN-QARAQLATTSDV 57 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALIN 88 ++E+V ++ AI +G+L++D ++ A+++ Sbjct: 58 DMEKVNQIRQAISDGKLELDMDALSQAILD 87 >UniRef50_Q46PG6 Anti-sigma-28 factor, FlgM n=3 Tax=Cupriavidus RepID=Q46PG6_RALEJ Length = 102 Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 23/100 (23%) Query: 1 MSIDRTSPLKPV------STVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPG 54 M I+ ++ +P STV+P+ APV +T++ V++S +++ + G Sbjct: 1 MKINHSTSSRPADAPAADSTVRPQAGQSAPV----------ATTSGVSVSPLASQVREIG 50 Query: 55 S-------SDINLERVEALKLAIRNGELKMDTGKIADALI 87 S DI+ +VE ++ AI G +K+D GKIAD L+ Sbjct: 51 SRLANETDDDIDTAKVEEIRQAIAEGRIKIDPGKIADGLL 90 >UniRef50_A0Z350 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z350_9GAMM Length = 105 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 30/38 (78%) Query: 55 SSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQ 92 +S +++E+VEA++ I +G+ ++D G+IADALI + Q+ Sbjct: 66 ASGVDVEKVEAIRQRIADGDYEIDAGQIADALIRQEQE 103 >UniRef50_D0FQ39 Negative regulator of flagellin synthesis (Anti-sigma-28 factor) n=2 Tax=Erwinia pyrifoliae RepID=D0FQ39_ERWPY Length = 99 Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 13/96 (13%) Query: 1 MSIDRTSP---------LKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLM 51 MSIDRT+P ++ + Q + PV A T+ T V LS ++ Sbjct: 1 MSIDRTTPAAAANAIAAVRDMRGRQLNQDAGNPV----AHNTSGDDKTQVRLSSLVQQMK 56 Query: 52 QPGSSDINLERVEALKLAIRNGELKMDTGKIADALI 87 S+DI+ +RV ++ A+ GEL +D KIA AL+ Sbjct: 57 NDSSNDIDEQRVAEIRAALDAGELPLDPQKIARALV 92 >UniRef50_A1T0L6 Anti-sigma-28 factor, FlgM n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T0L6_PSYIN Length = 102 Score = 38.5 bits (88), Expect = 0.072, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 29/41 (70%) Query: 57 DINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 DI+ E+V+ ++LAI NGELK+D +A A++NE D SN Sbjct: 61 DIDREKVKQVQLAIANGELKIDLNSLARAIMNEHLLDNTSN 101 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P26477 Negative regulator of flagellin synthesis n=133 ... 97 2e-19 UniRef50_A1JT31 Negative regulator of flagellin synthesis n=8 Ta... 94 2e-18 UniRef50_A8GG33 Anti-sigma-28 factor, FlgM n=4 Tax=Enterobacteri... 92 7e-18 UniRef50_D1NZL0 Negative regulator of flagellin synthesis n=4 Ta... 88 1e-16 UniRef50_P96974 Negative regulator of flagellin synthesis n=6 Ta... 81 1e-14 UniRef50_D2TYH3 Flagella synthesis protein FlgM n=1 Tax=Arsenoph... 76 3e-13 UniRef50_C6C358 Anti-sigma-28 factor, FlgM n=1 Tax=Dickeya dadan... 75 1e-12 UniRef50_A9IKP4 Negative regulator of flagellin synthesis n=1 Ta... 65 5e-10 UniRef50_Q2NR89 Negative regulator of flagellin synthesis FlgM n... 62 5e-09 UniRef50_B2T7A3 Anti-sigma-28 factor, FlgM n=5 Tax=Burkholderia ... 56 3e-07 UniRef50_B2UJX6 Anti-sigma-28 factor, FlgM n=5 Tax=Ralstonia Rep... 51 1e-05 Sequences not found previously or not previously below threshold: UniRef50_A9ABN9 Negative regulator of flagellin synthesis n=14 T... 55 6e-07 UniRef50_Q1QW26 Anti-sigma-28 factor, FlgM n=1 Tax=Chromohalobac... 51 8e-06 UniRef50_D0FQ39 Negative regulator of flagellin synthesis (Anti-... 51 1e-05 UniRef50_UPI00016A6637 putative anti-sigma-28 factor, FlgM n=1 T... 50 3e-05 UniRef50_Q46PG6 Anti-sigma-28 factor, FlgM n=3 Tax=Cupriavidus R... 50 3e-05 UniRef50_Q2NX22 Negative regulator of flagellin synthesis FlgM n... 49 6e-05 UniRef50_Q1LGX2 Anti-sigma-28 factor, FlgM n=1 Tax=Cupriavidus m... 47 2e-04 UniRef50_B1XWK0 Anti-sigma-28 factor, FlgM n=2 Tax=Burkholderial... 47 2e-04 UniRef50_B2JR17 Anti-sigma-28 factor, FlgM n=1 Tax=Burkholderia ... 46 3e-04 UniRef50_Q2L1C2 Negative regulator of flagellin synthesis n=4 Ta... 46 5e-04 UniRef50_C4KAU9 Anti-sigma-28 factor, FlgM n=1 Tax=Thauera sp. M... 45 6e-04 UniRef50_A1K953 Putative negative regulator of flagellin synthes... 45 6e-04 UniRef50_Q3SID6 Putative Anti-Sigma-28 factor, FlgM n=1 Tax=Thio... 45 0.001 UniRef50_C1DHJ0 Anti-sigma-28 factor n=1 Tax=Azotobacter vinelan... 44 0.001 UniRef50_C4KMX4 Anti-sigma-28 factor, FlgM n=33 Tax=Burkholderia... 44 0.002 UniRef50_Q47I28 Putative uncharacterized protein n=1 Tax=Dechlor... 43 0.004 UniRef50_C5CXV8 Anti-sigma-28 factor, FlgM n=1 Tax=Variovorax pa... 42 0.005 UniRef50_A5L6N0 Putative uncharacterized protein n=2 Tax=Vibrion... 42 0.006 UniRef50_A4A620 Negative regulator of flagellin synthesis FlgM n... 41 0.009 UniRef50_Q1GZW8 Anti-sigma-28 factor, FlgM n=1 Tax=Methylobacill... 41 0.011 UniRef50_A0Z350 Putative uncharacterized protein n=1 Tax=marine ... 41 0.014 UniRef50_Q7NZC2 Negative regulator of flagellin synthesis n=2 Ta... 41 0.016 UniRef50_C6MC99 Anti-sigma-28 factor, FlgM n=1 Tax=Nitrosomonas ... 41 0.016 UniRef50_C2ED80 Putative uncharacterized protein n=1 Tax=Lactoba... 40 0.019 UniRef50_B7WY20 Anti-sigma-28 factor, FlgM n=2 Tax=Comamonas tes... 40 0.021 UniRef50_A3W2C7 Putative FlgM, negative regulator of flagellin s... 40 0.024 UniRef50_B1YLK8 Putative anti-sigma-28 factor, FlgM n=1 Tax=Exig... 40 0.024 UniRef50_A5IG06 Negative regulator of flagellin synthesis n=5 Ta... 40 0.027 UniRef50_A1TZU6 Anti-sigma-28 factor, FlgM n=3 Tax=Marinobacter ... 40 0.029 UniRef50_B1I5H8 Anti-sigma-28 factor, FlgM n=1 Tax=Candidatus De... 40 0.031 UniRef50_C4RWR9 Negative regulator of flagellin synthesis (Anti-... 40 0.031 UniRef50_A1TVH0 Anti-sigma-28 factor, FlgM n=5 Tax=Comamonadacea... 40 0.031 UniRef50_C9YEL2 Putative uncharacterized protein n=1 Tax=Curviba... 40 0.038 UniRef50_A4SI21 Lateral flagella anti-sigma-28 factor, LfgM n=2 ... 39 0.040 UniRef50_C8PPM5 Anti-sigma-28 factor, FlgM n=1 Tax=Treponema vin... 39 0.058 UniRef50_A6SXV9 Negative regulator of flagellin synthesis n=1 Ta... 38 0.075 UniRef50_C6P5F7 Anti-sigma-28 factor, FlgM n=1 Tax=Sideroxydans ... 38 0.079 UniRef50_C6WVB2 Anti-sigma-28 factor, FlgM n=2 Tax=Methylophilac... 38 0.087 >UniRef50_P26477 Negative regulator of flagellin synthesis n=133 Tax=Enterobacteriaceae RepID=FLGM_SALTY Length = 97 Score = 96.9 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 78/97 (80%), Positives = 84/97 (86%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 MSIDRTSPLKPVSTVQ RET+D PV +R KT+A+TS SVTLSDAQAKLMQPG SDIN+ Sbjct: 1 MSIDRTSPLKPVSTVQTRETSDTPVQKTRQEKTSAATSASVTLSDAQAKLMQPGVSDINM 60 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 ERVEALK AIRNGELKMDTGKIAD+LI EAQ LQS Sbjct: 61 ERVEALKTAIRNGELKMDTGKIADSLIREAQSYLQSK 97 >UniRef50_A1JT31 Negative regulator of flagellin synthesis n=8 Tax=Enterobacteriaceae RepID=FLGM_YERE8 Length = 99 Score = 93.8 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 58/99 (58%), Positives = 71/99 (71%), Gaps = 2/99 (2%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTT--ASTSTSVTLSDAQAKLMQPGSSDI 58 MSIDRT PL PV+ VQPRET+D + + + + T V LSDAQAKLMQPGS DI Sbjct: 1 MSIDRTQPLLPVTPVQPRETSDIAQQTRKPSAQSKTPVSGTEVKLSDAQAKLMQPGSQDI 60 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 N+ERVE LK AIR+G+L MDTGKIADAL+ DL+++ Sbjct: 61 NVERVETLKQAIRSGQLTMDTGKIADALLKNVADDLKNS 99 >UniRef50_A8GG33 Anti-sigma-28 factor, FlgM n=4 Tax=Enterobacteriaceae RepID=A8GG33_SERP5 Length = 108 Score = 91.5 bits (225), Expect = 7e-18, Method: Composition-based stats. Identities = 56/97 (57%), Positives = 67/97 (69%), Gaps = 2/97 (2%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKT--TASTSTSVTLSDAQAKLMQPGSSDI 58 MSIDRT L+PV TVQ RET R +A + T V LSDAQA+LMQPG+ DI Sbjct: 1 MSIDRTQRLQPVPTVQARETPAENQLQPRKTAQTESAVSGTQVKLSDAQARLMQPGTQDI 60 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 ++ RV+A+K AIRNGELKMD GKIADAL+ + Q D Q Sbjct: 61 DMNRVDAIKQAIRNGELKMDAGKIADALLQDVQSDAQ 97 >UniRef50_D1NZL0 Negative regulator of flagellin synthesis n=4 Tax=Providencia RepID=D1NZL0_9ENTR Length = 100 Score = 87.7 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 2/98 (2%) Query: 1 MSIDRTSPLKPVSTVQPRETTDA--PVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDI 58 M+I++TS + ++ V R+ DA P+ + + + A +S S+ Q KL+QP ++DI Sbjct: 1 MAIEQTSAISALTQVTTRDPQDATAPMRDKKISANEAVKESSFAPSELQKKLLQPQATDI 60 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQS 96 + +VE +K AI++G L MD GKIAD ++ +A + + S Sbjct: 61 DTAKVEKIKQAIKDGTLTMDAGKIADGILRDAHECMLS 98 >UniRef50_P96974 Negative regulator of flagellin synthesis n=6 Tax=Enterobacteriaceae RepID=FLGM_PROMI Length = 99 Score = 81.1 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 3/97 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAA---KTTASTSTSVTLSDAQAKLMQPGSSD 57 MSI+RT+PL P++ + R + + + TSV LS+AQ KL+QP + D Sbjct: 1 MSIERTNPLIPITAISQRNLNEGAQEARKTGNAQTKAMAGDTSVKLSEAQKKLVQPSNQD 60 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 IN+E+V LK AI +G L MD+ KIA+AL EA + + Sbjct: 61 INVEKVARLKAAIADGTLTMDSSKIAEALFREAAESI 97 >UniRef50_D2TYH3 Flagella synthesis protein FlgM n=1 Tax=Arsenophonus nasoniae RepID=D2TYH3_9ENTR Length = 97 Score = 76.5 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 8/93 (8%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTST-----SVTLSDAQAKLMQPGS 55 MSI++T+PL ++ + E P + K +A++ +++LS A KL+Q + Sbjct: 1 MSIEKTTPLSGITALSHHE---EPQPQQKKVKQSATSEQKDPIFTLSLSGAAEKLLQANN 57 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALIN 88 DI ++VE ++ I +GEL D KIAD LI Sbjct: 58 KDIREQKVEQIRQKIEHGELTTDAEKIADVLIK 90 >UniRef50_C6C358 Anti-sigma-28 factor, FlgM n=1 Tax=Dickeya dadantii Ech703 RepID=C6C358_DICDC Length = 97 Score = 74.6 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 44/97 (45%), Positives = 68/97 (70%), Gaps = 3/97 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAK---TTASTSTSVTLSDAQAKLMQPGSSD 57 MSID T P+ V ++Q +++ T + + + + T V LS+AQ++LMQP S D Sbjct: 1 MSIDSTRPVSGVKSIQNKDSGLLQSTKGKTSSVTDNSETEQTQVNLSEAQSRLMQPSSQD 60 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 I+LE+VE++K AI++G+L++D GKIADAL+NEAQ D+ Sbjct: 61 IDLEKVESIKQAIKDGKLQIDVGKIADALLNEAQSDI 97 >UniRef50_A9IKP4 Negative regulator of flagellin synthesis n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IKP4_BORPD Length = 120 Score = 65.3 bits (157), Expect = 5e-10, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%) Query: 10 KPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLM--QPGSSDINLERVEALK 67 +PV P D P + + ++ +TS V LS A +L+ Q GSSDI++ERV A++ Sbjct: 33 RPVGAQAPGGRADTPAGAAPSTASSGATSAQVALSPASRQLLALQDGSSDIDVERVAAIR 92 Query: 68 LAIRNGELKMDTGKIADALINEAQQDLQ 95 AI +G+L++D G+IAD+LI A+ ++ Sbjct: 93 AAIASGQLQIDAGRIADSLIASARDLVK 120 >UniRef50_Q2NR89 Negative regulator of flagellin synthesis FlgM n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NR89_SODGM Length = 104 Score = 62.2 bits (149), Expect = 5e-09, Method: Composition-based stats. Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 14/105 (13%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTAST-----------STSVTLSDAQAK 49 MSI+ + +PV ++ P + D ++ KT AS ++V+LSD + Sbjct: 1 MSIESS---RPVQSLAPLQNIDGNTVQAQKNKTAASARNQENQENQENQSTVSLSDTLDQ 57 Query: 50 LMQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 L + S DI++ +VE +K AIR+G L MD+GKIADALI++AQ L Sbjct: 58 LQKQDSQDIDVAKVERIKDAIRDGSLTMDSGKIADALISQAQSML 102 >UniRef50_B2T7A3 Anti-sigma-28 factor, FlgM n=5 Tax=Burkholderia RepID=B2T7A3_BURPP Length = 117 Score = 56.1 bits (133), Expect = 3e-07, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 16 QPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ---PGSSDINLERVEALKLAIRN 72 + T+ S SV+LS L GS+DI+ VE++K AI++ Sbjct: 27 TTANGNAQNAGTASQTTTSGSGGASVSLSGLSQHLRSLAASGSADIDTAHVESIKQAIKD 86 Query: 73 GELKMDTGKIADALINEAQQDLQSN 97 G LK+D+GKIAD ++N A++ LQS Sbjct: 87 GSLKIDSGKIADGVLNTARELLQSK 111 >UniRef50_A9ABN9 Negative regulator of flagellin synthesis n=14 Tax=Burkholderia RepID=A9ABN9_BURM1 Length = 112 Score = 55.3 bits (131), Expect = 6e-07, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAA-------KTTASTSTSVTLSDAQAKLMQP 53 M ID T PV+ P + + A+ +A +V LS +L Sbjct: 1 MKIDTTPNPSPVAPASTGNGAARPQSGAAASTAPQASDAGSAGGDATVNLSGLSGQLRAQ 60 Query: 54 ---GSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 G +DI++ V+++K A+++G L +D KIAD ++N A++ LQ Sbjct: 61 SASGGADIDMGLVQSIKDALKDGTLTIDANKIADGVLNTARELLQQQ 107 >UniRef50_Q1QW26 Anti-sigma-28 factor, FlgM n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QW26_CHRSD Length = 118 Score = 51.5 bits (121), Expect = 8e-06, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 2 SIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLE 61 SI + S L P + E DA +R TA S+ +++ S DI++ Sbjct: 21 SILKISNLHPPTQTTQSEQGDAAQ-RTRRGDDTAQASSPASITTLSQSNEADTSQDIDVG 79 Query: 62 RVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 RV ++ AI +G+L++DTGKIAD LI+ + L Sbjct: 80 RVAEIRQAISDGQLELDTGKIADGLIDSVRDLL 112 >UniRef50_D0FQ39 Negative regulator of flagellin synthesis (Anti-sigma-28 factor) n=2 Tax=Erwinia pyrifoliae RepID=D0FQ39_ERWPY Length = 99 Score = 51.1 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAK-----TTASTSTSVTLSDAQAKLMQPGS 55 MSIDRT+P + + N A T+ T V LS ++ S Sbjct: 1 MSIDRTTPAAAANAIAAVRDMRGRQLNQDAGNPVAHNTSGDDKTQVRLSSLVQQMKNDSS 60 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINE 89 +DI+ +RV ++ A+ GEL +D KIA AL+ + Sbjct: 61 NDIDEQRVAEIRAALDAGELPLDPQKIARALVMD 94 >UniRef50_B2UJX6 Anti-sigma-28 factor, FlgM n=5 Tax=Ralstonia RepID=B2UJX6_RALPJ Length = 106 Score = 50.7 bits (119), Expect = 1e-05, Method: Composition-based stats. Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 9/87 (10%) Query: 20 TTDAPVTNSRAAKTT-ASTSTSVTLSDA--------QAKLMQPGSSDINLERVEALKLAI 70 T DA ++RAA TT AST+ S + + Q Q GS D + RVE ++ AI Sbjct: 16 TKDATSGSTRAASTTPASTAASGSARHSGDTPSLSVQRVSRQVGSGDFDAARVEQIRSAI 75 Query: 71 RNGELKMDTGKIADALINEAQQDLQSN 97 ++G LKMD GKIADA ++ AQ L + Sbjct: 76 QSGTLKMDAGKIADAALSAAQSLLSTR 102 >UniRef50_UPI00016A6637 putative anti-sigma-28 factor, FlgM n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A6637 Length = 77 Score = 49.9 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 43 LSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 LS L G++DI+ V+++K A+ NG L +D KIAD ++N A++ L+ Sbjct: 18 LSGQLRTLSASGNADIDTGLVQSIKDALSNGTLTIDASKIADGVLNTARELLKQQ 72 >UniRef50_Q46PG6 Anti-sigma-28 factor, FlgM n=3 Tax=Cupriavidus RepID=Q46PG6_RALEJ Length = 102 Score = 49.9 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 3/98 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQA---KLMQPGSSD 57 M I+ ++ +P T S TT+ S S S + +L D Sbjct: 1 MKINHSTSSRPADAPAADSTVRPQAGQSAPVATTSGVSVSPLASQVREIGSRLANETDDD 60 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 I+ +VE ++ AI G +K+D GKIAD L+ ++ Q Sbjct: 61 IDTAKVEEIRQAIAEGRIKIDPGKIADGLLATLRELSQ 98 >UniRef50_Q2NX22 Negative regulator of flagellin synthesis FlgM n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NX22_SODGM Length = 74 Score = 48.8 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 19/90 (21%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 MSI+RT P + V +TLSD + ++ + D++ Sbjct: 1 MSIERTLPAHAIMAVVNDLRH----------------GQEITLSDTRLQMRR---QDVDP 41 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINEA 90 V L+ AI G+L MD+G++ADAL+ A Sbjct: 42 NLVAQLQHAIGQGKLIMDSGRVADALLMNA 71 >UniRef50_Q1LGX2 Anti-sigma-28 factor, FlgM n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LGX2_RALME Length = 126 Score = 46.8 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%) Query: 34 TASTSTSVTLSDAQ-----AKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADALIN 88 TA T V+ AQ +L+Q SDI++ +V ++ AI G +++D KIAD L+ Sbjct: 55 TALTGVRVSPLAAQVREIGTRLLQDSDSDIDVAKVAEVRKAIAEGRIQIDPSKIADGLLA 114 Query: 89 EAQQDLQ 95 + Q Sbjct: 115 SLHELSQ 121 >UniRef50_B1XWK0 Anti-sigma-28 factor, FlgM n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XWK0_LEPCP Length = 106 Score = 46.8 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 6/100 (6%) Query: 1 MSIDRTSPLKPVSTVQPRETTD-----APVTNSRAAKTTAS-TSTSVTLSDAQAKLMQPG 54 M I +T+ ++ T+ +S+ + A+ S++V LS L++ Sbjct: 1 MKIGQTNAPPAITPAGSAATSSARAATEGARDSQGPRAAATDGSSTVQLSSTARALLEGA 60 Query: 55 SSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 + E+VE ++ +I +G K++ IAD LI A + L Sbjct: 61 DGTFDAEKVERVRQSISDGTYKINPDAIADKLIANAHEVL 100 >UniRef50_B2JR17 Anti-sigma-28 factor, FlgM n=1 Tax=Burkholderia phymatum STM815 RepID=B2JR17_BURP8 Length = 100 Score = 46.4 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Query: 1 MSIDRTSPLKPV-STVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDIN 59 M I+ ++ + R T DA + A S + + + + L +DI+ Sbjct: 1 MKIESSNNSITIHRPGAVRATNDAEAQGAVGAVRKTDAPLSGSSTVSLSTLPTASDADID 60 Query: 60 LERVEALKLAIRNGELKMDTGKIADALINEAQQDLQS 96 +VE++K A+R+G +D+ KIAD +++ A+ LQ+ Sbjct: 61 TAQVESIKAALRDGTYTVDSSKIADGMMSNARDLLQT 97 >UniRef50_Q2L1C2 Negative regulator of flagellin synthesis n=4 Tax=Bordetella RepID=Q2L1C2_BORA1 Length = 95 Score = 45.7 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 6 TSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLM--QPGSSDINLERV 63 T+ +PV+ + D + + + ++S+ V LS A +L+ Q G SDI++ERV Sbjct: 5 TTLARPVAA-NTAQRPDNALAQAYGSGNGNASSSQVALSGASRQLLALQEGGSDIDVERV 63 Query: 64 EALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 A++ AI G+L++D +IAD+LI A++ + Sbjct: 64 AAIRAAIAAGQLRIDPSRIADSLIASAKELTK 95 >UniRef50_C4KAU9 Anti-sigma-28 factor, FlgM n=1 Tax=Thauera sp. MZ1T RepID=C4KAU9_THASP Length = 99 Score = 45.3 bits (105), Expect = 6e-04, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 1 MSIDRT-SPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDIN 59 M I+ + + P + + R + A + +A + +S++ S A+A+ + ++ Sbjct: 1 MKIESSGKAIAPSTAAEARPRSPASPGATVSAGSEKVQLSSLSSSLAKAEASIAQTPVVD 60 Query: 60 LERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 +RVE +K AI NGE ++D G+IAD LI+ ++ L Sbjct: 61 AQRVEEIKQAIANGEFRIDAGRIADGLIDSVREML 95 >UniRef50_A1K953 Putative negative regulator of flagellin synthesis FlgM n=1 Tax=Azoarcus sp. BH72 RepID=A1K953_AZOSB Length = 98 Score = 45.3 bits (105), Expect = 6e-04, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 1 MSIDRT-SPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDIN 59 M I+ + P+ VS + R + P T + A+ S+ + M+ + ++ Sbjct: 1 MKIESSGKPVAGVSVAENRGRVNTPKTETPASSDKVQLSSLSSTLQKAEAAME-NTPAVD 59 Query: 60 LERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 RV ++ AI G K+D+ KIAD LIN + L Sbjct: 60 SSRVAEIRQAIAEGRFKIDSSKIADGLINSVRDLLGDK 97 >UniRef50_Q3SID6 Putative Anti-Sigma-28 factor, FlgM n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SID6_THIDA Length = 98 Score = 44.5 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 10/101 (9%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSS---- 56 M ID + P+ ++ R P + + T VTLS +L Q S Sbjct: 1 MKIDPGAQPIPLPSIDNR-----PAQARANGHASTAPQTDVTLSPQATQLKQLESQLAAI 55 Query: 57 -DINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQS 96 ++ RV+++K AI +G+ +DT IA+ L++ ++ L++ Sbjct: 56 PVVDRARVDSIKQAIASGQYTIDTANIAEGLLDSVKEMLRA 96 >UniRef50_C1DHJ0 Anti-sigma-28 factor n=1 Tax=Azotobacter vinelandii DJ RepID=C1DHJ0_AZOVD Length = 95 Score = 44.1 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M ID +S P +P + +A R A + + S +V ++ + DI++ Sbjct: 1 MKIDNSS--TPPGAARPTDNREAGPRIQRDAPASRTESPAV-VAHIGQSAETDATRDIDM 57 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 RV ++ AI G L++ +IA LI+ ++ L Sbjct: 58 ARVVEIRQAIGEGRLQIRAERIAGGLIDSVRELL 91 >UniRef50_C4KMX4 Anti-sigma-28 factor, FlgM n=33 Tax=Burkholderia RepID=C4KMX4_BURPS Length = 114 Score = 43.7 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 35/53 (66%) Query: 43 LSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 LS L GS+DI+ +V+A++ AI++G L +DTGKIAD ++ A+ L+ Sbjct: 54 LSSTLRSLAASGSADIDTAQVDAIRDAIKSGTLSIDTGKIADGILQTARDLLK 106 >UniRef50_Q47I28 Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica RCB RepID=Q47I28_DECAR Length = 94 Score = 42.6 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%) Query: 13 STVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRN 72 + P + P T + ++ +V+LS+ L + IN R++ +K AI Sbjct: 5 GSYNPTTSAITPRTTATKTSAGSNAQEAVSLSNLSGSLQSSDTPPINSARIDEIKQAISE 64 Query: 73 GELKMDTGKIADALINEAQQDLQSN 97 G K++ IAD LI A+ + Sbjct: 65 GRFKINPEAIADRLIESARDLVNGK 89 >UniRef50_C5CXV8 Anti-sigma-28 factor, FlgM n=1 Tax=Variovorax paradoxus S110 RepID=C5CXV8_VARPS Length = 61 Score = 42.2 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 41 VTLSDAQAKLM-QPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 + LS Q + + +SD + RV +++ IR G ++ +IA L+ + L N Sbjct: 1 MKLSSGQVHSLPEAPNSDFDAARVASIREDIRAGRYEIHPDRIARGLLASVRDLLHEN 58 >UniRef50_A5L6N0 Putative uncharacterized protein n=2 Tax=Vibrionales RepID=A5L6N0_9GAMM Length = 95 Score = 42.2 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 1/86 (1%) Query: 3 IDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLER 62 +D + P + V + K + V L D L G DI+ + Sbjct: 6 VDNVKHVVPHTQVDVVQNKKTEPDQKAKVKPINLSQHEVELLDNTKSLF-DGVEDIDTAK 64 Query: 63 VEALKLAIRNGELKMDTGKIADALIN 88 VE +K I GEL D ++A + Sbjct: 65 VEQIKAQISAGELVFDMDELAKVITR 90 >UniRef50_A4A620 Negative regulator of flagellin synthesis FlgM n=2 Tax=unclassified Gammaproteobacteria RepID=A4A620_9GAMM Length = 108 Score = 41.4 bits (95), Expect = 0.009, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%) Query: 20 TTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSS-----DINLERVEALKLAIRNGE 74 T P S + S SV+++ +L+ + ++ RV++++ AI NG Sbjct: 29 TNSRPAPGSAKDAASVSDGESVSITGTATELLSLENQLKALPGVDQARVDSIREAISNGS 88 Query: 75 LKMDTGKIADALINEAQQD 93 +D +I D+L+ + Sbjct: 89 YSVDPERIVDSLLKSEVEL 107 >UniRef50_Q1GZW8 Anti-sigma-28 factor, FlgM n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GZW8_METFK Length = 100 Score = 41.1 bits (94), Expect = 0.011, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 8/102 (7%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ-----PGS 55 M ID L+ + +T + P + K SVTLS A+L Sbjct: 1 MKID--DALQKAVALNNDKTENRPAPRASENK-APVAGESVTLSPLAAQLQSIEAAGASE 57 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 + ++V A+K AI +G+ ++D+ K+AD LIN + L + Sbjct: 58 QVYDADKVNAIKSAISSGQFRVDSEKVADGLINTVKDLLTAQ 99 >UniRef50_A0Z350 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z350_9GAMM Length = 105 Score = 40.7 bits (93), Expect = 0.014, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 28 SRAAKTTASTSTSVTLSDAQAKLMQ-----PGSSDINLERVEALKLAIRNGELKMDTGKI 82 ++ A V L+D +L +S +++E+VEA++ I +G+ ++D G+I Sbjct: 34 AKTAAPAVMGDDRVELTDTATRLSALADDVRAASGVDVEKVEAIRQRIADGDYEIDAGQI 93 Query: 83 ADALINEAQQDL 94 ADALI + Q+ + Sbjct: 94 ADALIRQEQELV 105 >UniRef50_Q7NZC2 Negative regulator of flagellin synthesis n=2 Tax=Chromobacterium group RepID=Q7NZC2_CHRVO Length = 99 Score = 40.7 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSS---- 56 M ID + L + Q + +P +S ++ + ++ SV + +KL G+ Sbjct: 1 MKIDNSGKLSGTYSTQ---SKPSPRASSSSSSSASAKDDSVKIDSLASKLSAIGNDPSAQ 57 Query: 57 --DINLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 + +VE +K AI NG ++ KIAD LI+ AQ+ L Sbjct: 58 QPSFDAAKVEQIKSAIANGSFSINADKIADGLISSAQELL 97 >UniRef50_C6MC99 Anti-sigma-28 factor, FlgM n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MC99_9PROT Length = 101 Score = 40.7 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSD--- 57 M ID++ L+PVS V D + + +V LS KL S+ Sbjct: 1 MKIDKS--LQPVSIVS---VNDGKRRTDITPNPSTNQENNVHLSPNATKLQTIDSATENG 55 Query: 58 --INLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 +N R++ +K AI G +++ +AD L+ ++ +QS Sbjct: 56 SIVNTARIQEIKQAISEGNFQINPEVVADRLLETVKELIQSK 97 >UniRef50_C2ED80 Putative uncharacterized protein n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ED80_9LACO Length = 95 Score = 40.3 bits (92), Expect = 0.019, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Query: 10 KPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLM-----QPGSSDINLERVE 64 + + T ++ ++ +++ + LSD KL+ Q S I+ ++V Sbjct: 5 RSYTEYTNLPTVKGSKNVAKQSQAINASNDKINLSDTAKKLLCRAEVQSSHSGIDPDKVA 64 Query: 65 ALKLAIRNGELKMDTGKIADALINEAQQ 92 LK AI +G ++ KIAD +++ + Sbjct: 65 RLKAAINDGSYQVSAEKIADKMLDAVDE 92 >UniRef50_B7WY20 Anti-sigma-28 factor, FlgM n=2 Tax=Comamonas testosteroni RepID=B7WY20_COMTE Length = 104 Score = 40.3 bits (92), Expect = 0.021, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 17 PRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPG--SSDINLERVEALKLAIRNGE 74 P+ T S + + V+ S + L ++D + +RV+A++ AI NG Sbjct: 20 PKSATTVATEESTKGLSERTAGVPVSFSSSARALDSQSRTNTDFDADRVKAMREAIANGS 79 Query: 75 LKMDTGKIADALINEAQQDL 94 +++ +AD L+ ++ L Sbjct: 80 FRVNAEAVADKLLANTEEFL 99 >UniRef50_A3W2C7 Putative FlgM, negative regulator of flagellin synthesis n=2 Tax=Roseovarius RepID=A3W2C7_9RHOB Length = 100 Score = 39.9 bits (91), Expect = 0.024, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 1/88 (1%) Query: 8 PLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEALK 67 L PVST + + + ++ +++ G + ERV +K Sbjct: 14 RLMPVSTESAPGGASGTRAHQPVSSVDSVKLSTSASIGVIERMVDQGPP-FDAERVSRIK 72 Query: 68 LAIRNGELKMDTGKIADALINEAQQDLQ 95 A+ NG +D +IAD++ + ++ Sbjct: 73 DAVANGNYPVDAKRIADSIFQDYSAMMR 100 >UniRef50_B1YLK8 Putative anti-sigma-28 factor, FlgM n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YLK8_EXIS2 Length = 82 Score = 39.9 bits (91), Expect = 0.024, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M ID T + + R +R + T +S +A+L ++ Sbjct: 1 MRIDSTKWVN-MPKTYERNQKVEGTEPTRTNRPDEVTISS------EARLRFNETTPSRT 53 Query: 61 ERVEALKLAIRNGELKMDTGKIADALIN 88 E++E+L+ AI++G K D KIA+ +N Sbjct: 54 EKIESLRQAIQDGTYKPDAKKIAERFLN 81 >UniRef50_A5IG06 Negative regulator of flagellin synthesis n=5 Tax=Legionella RepID=A5IG06_LEGPC Length = 106 Score = 39.9 bits (91), Expect = 0.027, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Query: 19 ETTDAPVTNSRAAKTTASTSTSVTLSDAQAKL--MQPGSSD---INLERVEALKLAIRNG 73 +A ++ +++ SV LS +L ++ D IN RV K I++G Sbjct: 27 NRINANHKEVKSPVLENNSTDSVNLSSTSKQLEALKASLKDLPEINEARVLYFKAEIQSG 86 Query: 74 ELKMDTGKIADALINEAQ 91 + ++D+ KIA ++N + Sbjct: 87 QYEIDSSKIAHGMLNSVE 104 >UniRef50_A1TZU6 Anti-sigma-28 factor, FlgM n=3 Tax=Marinobacter RepID=A1TZU6_MARAV Length = 108 Score = 39.5 bits (90), Expect = 0.029, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Query: 19 ETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSS-----DINLERVEALKLAIRNG 73 +T+ AP A++ A+ +V LS+ L Q +++ +R+E ++ A+ NG Sbjct: 27 QTSQAPTGEQAKAQSPAARGENVNLSNQAKNLKQLEQKLGDYPEMDDDRIEQIRSALENG 86 Query: 74 ELKMDTGKIADALI 87 K+D K+A ++ Sbjct: 87 TYKVDAQKLAQKML 100 >UniRef50_B1I5H8 Anti-sigma-28 factor, FlgM n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5H8_DESAP Length = 98 Score = 39.5 bits (90), Expect = 0.031, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 7/94 (7%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSS---- 56 M ID+T + ++ + R+ D + A SV LSD +L Sbjct: 1 MKIDKTGGVD-LTRIYGRQIVDRKPGEHPRTE-GAEERDSVELSDQARELQAYRQKLAEL 58 Query: 57 -DINLERVEALKLAIRNGELKMDTGKIADALINE 89 + E VE LK I+ G D KIA L+ E Sbjct: 59 PAVRTELVERLKAEIQAGTYDADAEKIAAGLVRE 92 >UniRef50_C4RWR9 Negative regulator of flagellin synthesis (Anti-sigma28 factor) n=2 Tax=Yersinia RepID=C4RWR9_YERBE Length = 86 Score = 39.5 bits (90), Expect = 0.031, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Query: 13 STVQPRETTDAPVTNSRAAKTTAS---TSTSVTLSDAQAKLMQPGSSDINLERVEALKLA 69 + P++ P T ++++ S + T V LS ++ S DI+ +R+ ++ + Sbjct: 3 TANAPQDLKLRPRTAELSSQSIVSNENSGTQVKLSKLTNQIQTDSSRDIDYDRLAKIQAS 62 Query: 70 IRNGELKMDTGKIADALINE 89 + GEL +D+ KIA+ L+ + Sbjct: 63 MDAGELVLDSDKIANVLVQD 82 >UniRef50_A1TVH0 Anti-sigma-28 factor, FlgM n=5 Tax=Comamonadaceae RepID=A1TVH0_ACIAC Length = 113 Score = 39.5 bits (90), Expect = 0.031, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 26/44 (59%) Query: 54 GSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 S+D + +V+A++ AI G +D IAD L++ AQ+ + + Sbjct: 66 SSADFDANKVKAVRAAIEKGTFTVDAEAIADKLLSNAQETIAHS 109 >UniRef50_C9YEL2 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YEL2_9BURK Length = 109 Score = 39.5 bits (90), Expect = 0.038, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 6 TSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQP--GSSDINLERV 63 TS + + + + A N+ AA++T S +VT+S A L +P +D++ +V Sbjct: 14 TSTVSGAAQKAAQNSNAAANANTNAAQSTRSAGVAVTVSTAARALEKPERNDADVDTAKV 73 Query: 64 EALKLAIRNGELKMDTGKIADALINEAQQDL 94 ++K AI++G ++ IAD L++ AQ+ L Sbjct: 74 ASVKAAIQDGTYTVNAEAIADKLLSNAQEML 104 >UniRef50_A4SI21 Lateral flagella anti-sigma-28 factor, LfgM n=2 Tax=Aeromonas RepID=A4SI21_AERS4 Length = 91 Score = 39.1 bits (89), Expect = 0.040, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M I RT PL + +Q + + +RA++ A ST+ + QA+ +SD+++ Sbjct: 1 MKITRTDPLYVQTQLQRKPESATTQPQARASQADAQISTTAQFVN-QARAQLATTSDVDM 59 Query: 61 ERVEALKLAIRNGELKMDTGKIADALI 87 E+V ++ AI +G+L++D ++ A++ Sbjct: 60 EKVNQIRQAISDGKLELDMDALSQAIL 86 >UniRef50_C8PPM5 Anti-sigma-28 factor, FlgM n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PPM5_9SPIO Length = 94 Score = 38.7 bits (88), Expect = 0.058, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 4/92 (4%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSS-DIN 59 M+IDR + + PV VQP + T ++A + S+ V LSDA L ++ DI Sbjct: 1 MTIDRLNGIDPVKPVQPIQRTQRTEILNKADAVSVSSEARV-LSDANIALEAVRNAPDIR 59 Query: 60 LERVEALKLAIRNGELKMDT--GKIADALINE 89 ++V +K + + +AD ++++ Sbjct: 60 EDKVAEVKKKFEDPSYINNALLELVADRILDD 91 >UniRef50_A6SXV9 Negative regulator of flagellin synthesis n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXV9_JANMA Length = 128 Score = 38.4 bits (87), Expect = 0.075, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 21 TDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQP--GSSDINLERVEALKLAIRNGELKMD 78 T + T S++VTLS L +S + ++V+ +K AI G+ +++ Sbjct: 48 TQTRAGKAPEKADTGKVSSNVTLSSQVQALTSQVASASVFDAKKVDEIKAAIAGGQFQVN 107 Query: 79 TGKIADALINEAQQDLQSN 97 ++AD L++ + + + Sbjct: 108 AERVADGLMDTVKDLISTR 126 >UniRef50_C6P5F7 Anti-sigma-28 factor, FlgM n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P5F7_9PROT Length = 105 Score = 38.4 bits (87), Expect = 0.079, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%) Query: 1 MSIDRTSPLKPVSTV-QPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ-----PG 54 M I++TS P + A + T ++ TSV L A+L Sbjct: 1 MKIEKTSKPLPTPAAGETGSRASAARSADNKDSTAENSGTSVHLGSTTAQLRSMESSIAS 60 Query: 55 SSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 S ++ ++V +K AI G K+++G +AD LIN Q + ++ Sbjct: 61 SPLVDAKKVTEIKQAISEGRFKVNSGIVADRLINSVQDLITAS 103 >UniRef50_C6WVB2 Anti-sigma-28 factor, FlgM n=2 Tax=Methylophilaceae RepID=C6WVB2_METML Length = 112 Score = 38.0 bits (86), Expect = 0.087, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%) Query: 13 STVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ-----PGSSDINLERVEALK 67 + DA ++A + +++ +VTLS AKL S+ + E+V+A+K Sbjct: 22 KANAAKVEADAKQKAGKSASSESASG-NVTLSPLSAKLQTLETKVKASNVYDTEKVDAIK 80 Query: 68 LAIRNGELKMDTGKIADALINEAQQDLQSN 97 AI NG+ +++ K+A+ LI + L S Sbjct: 81 SAIANGQFSVNSEKVAEGLIETVKDLLTSR 110 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A1JT31 Negative regulator of flagellin synthesis n=8 Ta... 88 1e-16 UniRef50_P26477 Negative regulator of flagellin synthesis n=133 ... 88 1e-16 UniRef50_A8GG33 Anti-sigma-28 factor, FlgM n=4 Tax=Enterobacteri... 83 2e-15 UniRef50_D1NZL0 Negative regulator of flagellin synthesis n=4 Ta... 79 5e-14 UniRef50_D2TYH3 Flagella synthesis protein FlgM n=1 Tax=Arsenoph... 76 3e-13 UniRef50_P96974 Negative regulator of flagellin synthesis n=6 Ta... 75 7e-13 UniRef50_C6C358 Anti-sigma-28 factor, FlgM n=1 Tax=Dickeya dadan... 75 8e-13 UniRef50_Q46PG6 Anti-sigma-28 factor, FlgM n=3 Tax=Cupriavidus R... 71 1e-11 UniRef50_C1DHJ0 Anti-sigma-28 factor n=1 Tax=Azotobacter vinelan... 69 4e-11 UniRef50_Q1QW26 Anti-sigma-28 factor, FlgM n=1 Tax=Chromohalobac... 69 4e-11 UniRef50_A1K953 Putative negative regulator of flagellin synthes... 69 6e-11 UniRef50_D0FQ39 Negative regulator of flagellin synthesis (Anti-... 68 1e-10 UniRef50_B2JR17 Anti-sigma-28 factor, FlgM n=1 Tax=Burkholderia ... 67 1e-10 UniRef50_Q2NX22 Negative regulator of flagellin synthesis FlgM n... 66 2e-10 UniRef50_B1XWK0 Anti-sigma-28 factor, FlgM n=2 Tax=Burkholderial... 66 3e-10 UniRef50_A9ABN9 Negative regulator of flagellin synthesis n=14 T... 66 4e-10 UniRef50_Q3SID6 Putative Anti-Sigma-28 factor, FlgM n=1 Tax=Thio... 63 4e-09 UniRef50_C4KAU9 Anti-sigma-28 factor, FlgM n=1 Tax=Thauera sp. M... 61 8e-09 UniRef50_Q1LGX2 Anti-sigma-28 factor, FlgM n=1 Tax=Cupriavidus m... 61 1e-08 UniRef50_Q2NR89 Negative regulator of flagellin synthesis FlgM n... 61 1e-08 UniRef50_B2T7A3 Anti-sigma-28 factor, FlgM n=5 Tax=Burkholderia ... 60 2e-08 UniRef50_UPI00016A6637 putative anti-sigma-28 factor, FlgM n=1 T... 60 3e-08 UniRef50_A9IKP4 Negative regulator of flagellin synthesis n=1 Ta... 58 1e-07 UniRef50_Q2L1C2 Negative regulator of flagellin synthesis n=4 Ta... 54 1e-06 UniRef50_B2UJX6 Anti-sigma-28 factor, FlgM n=5 Tax=Ralstonia Rep... 50 3e-05 UniRef50_C4KMX4 Anti-sigma-28 factor, FlgM n=33 Tax=Burkholderia... 48 1e-04 Sequences not found previously or not previously below threshold: UniRef50_Q0ADD4 Anti-sigma-28 factor, FlgM n=2 Tax=Nitrosomonas ... 58 9e-08 UniRef50_C5CXV8 Anti-sigma-28 factor, FlgM n=1 Tax=Variovorax pa... 56 3e-07 UniRef50_Q2Y9F1 Anti-sigma-28 factor, FlgM n=1 Tax=Nitrosospira ... 53 2e-06 UniRef50_C6MC99 Anti-sigma-28 factor, FlgM n=1 Tax=Nitrosomonas ... 53 2e-06 UniRef50_A6SXV9 Negative regulator of flagellin synthesis n=1 Ta... 52 7e-06 UniRef50_Q47I28 Putative uncharacterized protein n=1 Tax=Dechlor... 51 9e-06 UniRef50_C5V025 Anti-sigma-28 factor, FlgM n=1 Tax=Gallionella f... 50 2e-05 UniRef50_A6GSX4 Putative uncharacterized protein n=1 Tax=Limnoba... 50 2e-05 UniRef50_Q7NZC2 Negative regulator of flagellin synthesis n=2 Ta... 49 3e-05 UniRef50_C6P5F7 Anti-sigma-28 factor, FlgM n=1 Tax=Sideroxydans ... 49 4e-05 UniRef50_C1DCU3 FlgM n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 49 5e-05 UniRef50_A4G6B6 Putative negative regulator of flagellin synthes... 49 6e-05 UniRef50_A5IG06 Negative regulator of flagellin synthesis n=5 Ta... 48 7e-05 UniRef50_Q1GZW8 Anti-sigma-28 factor, FlgM n=1 Tax=Methylobacill... 48 9e-05 UniRef50_A4A620 Negative regulator of flagellin synthesis FlgM n... 48 1e-04 UniRef50_B7VKL5 Polar flagellar FlgM homolog n=56 Tax=Vibrionale... 48 1e-04 UniRef50_C6WVB2 Anti-sigma-28 factor, FlgM n=2 Tax=Methylophilac... 47 2e-04 UniRef50_C7RLC7 Anti-sigma-28 factor, FlgM n=1 Tax=Candidatus Ac... 47 2e-04 UniRef50_C9RAY7 Anti-sigma-28 factor, FlgM n=1 Tax=Ammonifex deg... 46 3e-04 UniRef50_C2ED80 Putative uncharacterized protein n=1 Tax=Lactoba... 46 3e-04 UniRef50_C5SD58 Anti-sigma-28 factor, FlgM n=1 Tax=Allochromatiu... 46 4e-04 UniRef50_Q3SIB7 Putative Anti-Sigma-28 factor, FlgM n=1 Tax=Thio... 46 4e-04 UniRef50_A5L6N0 Putative uncharacterized protein n=2 Tax=Vibrion... 46 5e-04 UniRef50_B7WY20 Anti-sigma-28 factor, FlgM n=2 Tax=Comamonas tes... 45 7e-04 UniRef50_B7IG10 Negative regulator of flagellin synthesis FlgM n... 45 8e-04 UniRef50_C9YEL2 Putative uncharacterized protein n=1 Tax=Curviba... 45 9e-04 UniRef50_A6GT68 Putative uncharacterized protein n=1 Tax=Limnoba... 45 0.001 UniRef50_C6D595 Anti-sigma-28 factor, FlgM n=2 Tax=Paenibacillus... 44 0.001 UniRef50_B3PGT3 Putative negative regulator of flagellin synthes... 44 0.001 UniRef50_B1YLK8 Putative anti-sigma-28 factor, FlgM n=1 Tax=Exig... 44 0.002 UniRef50_B1I5H8 Anti-sigma-28 factor, FlgM n=1 Tax=Candidatus De... 44 0.002 UniRef50_A6LJU5 Putative anti-sigma-28 factor, FlgM n=1 Tax=Ther... 44 0.002 UniRef50_A3W2C7 Putative FlgM, negative regulator of flagellin s... 44 0.002 UniRef50_A8U601 Putative uncharacterized protein n=1 Tax=Carnoba... 43 0.002 UniRef50_Q2SD55 Negative regulator of flagellin synthesis (Anti-... 43 0.002 UniRef50_Q21S41 Anti-sigma-28 factor, FlgM n=1 Tax=Rhodoferax fe... 43 0.003 UniRef50_A1TVH0 Anti-sigma-28 factor, FlgM n=5 Tax=Comamonadacea... 43 0.003 UniRef50_B9K750 Anti-sigma-28 factor, FlgM n=1 Tax=Thermotoga ne... 43 0.003 UniRef50_Q315F7 Putative anti-sigma-28 factor, FlgM n=1 Tax=Desu... 43 0.003 UniRef50_C4RWR9 Negative regulator of flagellin synthesis (Anti-... 43 0.003 UniRef50_B9KJB0 FlgM, negative regulator of flagellin synthesis ... 43 0.004 UniRef50_B0TPI4 Putative uncharacterized protein n=3 Tax=Shewane... 43 0.004 UniRef50_A4SI21 Lateral flagella anti-sigma-28 factor, LfgM n=2 ... 42 0.005 UniRef50_A7HNK5 Putative anti-sigma-28 factor, FlgM n=1 Tax=Ferv... 42 0.005 UniRef50_Q1YV92 Negative regulator of flagellin synthesis FlgM, ... 42 0.005 UniRef50_C6J2I9 Anti-sigma-28 factor FlgM family protein n=2 Tax... 42 0.005 UniRef50_A3Y8T2 Putative negative regulator of flagellin synthes... 42 0.006 UniRef50_C1A589 Putative uncharacterized protein n=1 Tax=Gemmati... 42 0.006 UniRef50_Q1N309 Negative regulator of flagellin synthesis (Anti-... 42 0.006 UniRef50_A5P6K2 Putative uncharacterized protein n=1 Tax=Erythro... 41 0.008 UniRef50_Q6MQD5 FlgM, negative regulator of flagellin synthesis ... 41 0.008 UniRef50_Q2BQU5 Negative regulator of flagellin synthesis FlgM, ... 41 0.008 UniRef50_A0Z350 Putative uncharacterized protein n=1 Tax=marine ... 41 0.009 UniRef50_A4BEK7 Negative regulator of flagellin synthesis FlgM n... 41 0.010 UniRef50_Q3J7Q9 Anti-sigma-28 factor, FlgM n=2 Tax=Nitrosococcus... 41 0.014 UniRef50_A1TZU6 Anti-sigma-28 factor, FlgM n=3 Tax=Marinobacter ... 41 0.015 UniRef50_Q3IDV4 Putative negative regulator of flagellin synthes... 41 0.016 UniRef50_D0L0Z8 Anti-sigma-28 factor, FlgM n=1 Tax=Halothiobacil... 41 0.016 UniRef50_A4J795 Putative anti-sigma-28 factor, FlgM n=1 Tax=Desu... 41 0.016 UniRef50_A4XW93 Anti-sigma-28 factor, FlgM n=21 Tax=cellular org... 41 0.017 UniRef50_A7JZA4 LfgM n=16 Tax=Vibrio RepID=A7JZA4_VIBSE 41 0.018 UniRef50_Q1MQP0 Putative uncharacterized protein flgM n=1 Tax=La... 40 0.019 UniRef50_Q74B56 FlgM family protein n=1 Tax=Geobacter sulfurredu... 40 0.020 UniRef50_B9ZPV8 Anti-sigma-28 factor, FlgM n=1 Tax=Thioalkalivib... 40 0.020 UniRef50_D2TJ79 Lateral flagellar anti-sigma factor 28 protein n... 40 0.020 UniRef50_A3WGU7 Putative uncharacterized protein n=1 Tax=Erythro... 40 0.024 UniRef50_A1VG68 Anti-sigma-28 factor, FlgM n=4 Tax=Desulfovibrio... 40 0.025 UniRef50_A1T0L6 Anti-sigma-28 factor, FlgM n=1 Tax=Psychromonas ... 40 0.030 UniRef50_A6VU68 Anti-sigma-28 factor, FlgM n=1 Tax=Marinomonas s... 39 0.038 UniRef50_B5YIW9 Negative regulator of flagellin synthesis n=1 Ta... 39 0.042 UniRef50_A9KSP6 Anti-sigma-28 factor, FlgM n=1 Tax=Clostridium p... 39 0.045 UniRef50_Q5DY19 Lateral flagellar anti-sigma factor 28 protein (... 39 0.046 UniRef50_C0GJK1 Anti-sigma-28 factor, FlgM n=1 Tax=Dethiobacter ... 39 0.046 UniRef50_Q0AA94 Anti-sigma-28 factor, FlgM n=1 Tax=Alkalilimnico... 39 0.047 UniRef50_B7GL02 Negative regulator of flagellin synthesis (Anti-... 39 0.051 UniRef50_Q0EYE3 Putative uncharacterized protein n=1 Tax=Maripro... 39 0.055 UniRef50_D1B9E6 Anti-sigma-28 factor FlgM family protein n=1 Tax... 39 0.061 UniRef50_B8CKV3 Anti-sigma-28 factor, FlgM n=1 Tax=Shewanella pi... 39 0.064 UniRef50_B4RV42 Negative regulator of flagellin synthesis FlgM n... 38 0.069 UniRef50_B1K3C2 Putative uncharacterized protein n=1 Tax=Burkhol... 38 0.075 UniRef50_Q31FK3 Anti-sigma-28 factor, FlgM n=1 Tax=Thiomicrospir... 38 0.076 UniRef50_D2C774 Anti-sigma-28 factor, FlgM n=5 Tax=Thermotogacea... 38 0.076 UniRef50_B2TLR2 Negative regulator of flagellin synthesis FlgM n... 38 0.085 UniRef50_A4ISV5 Anti-sigma factor repressor of sigma-D-dependent... 38 0.093 UniRef50_C5RFS4 Anti-sigma-28 factor, FlgM n=1 Tax=Clostridium c... 38 0.097 >UniRef50_A1JT31 Negative regulator of flagellin synthesis n=8 Tax=Enterobacteriaceae RepID=FLGM_YERE8 Length = 99 Score = 87.6 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 58/99 (58%), Positives = 72/99 (72%), Gaps = 2/99 (2%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTAS--TSTSVTLSDAQAKLMQPGSSDI 58 MSIDRT PL PV+ VQPRET+D + + + + + T V LSDAQAKLMQPGS DI Sbjct: 1 MSIDRTQPLLPVTPVQPRETSDIAQQTRKPSAQSKTPVSGTEVKLSDAQAKLMQPGSQDI 60 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 N+ERVE LK AIR+G+L MDTGKIADAL+ DL+++ Sbjct: 61 NVERVETLKQAIRSGQLTMDTGKIADALLKNVADDLKNS 99 >UniRef50_P26477 Negative regulator of flagellin synthesis n=133 Tax=Enterobacteriaceae RepID=FLGM_SALTY Length = 97 Score = 87.6 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 78/97 (80%), Positives = 84/97 (86%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 MSIDRTSPLKPVSTVQ RET+D PV +R KT+A+TS SVTLSDAQAKLMQPG SDIN+ Sbjct: 1 MSIDRTSPLKPVSTVQTRETSDTPVQKTRQEKTSAATSASVTLSDAQAKLMQPGVSDINM 60 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 ERVEALK AIRNGELKMDTGKIAD+LI EAQ LQS Sbjct: 61 ERVEALKTAIRNGELKMDTGKIADSLIREAQSYLQSK 97 >UniRef50_A8GG33 Anti-sigma-28 factor, FlgM n=4 Tax=Enterobacteriaceae RepID=A8GG33_SERP5 Length = 108 Score = 83.4 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 56/97 (57%), Positives = 67/97 (69%), Gaps = 2/97 (2%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKT--TASTSTSVTLSDAQAKLMQPGSSDI 58 MSIDRT L+PV TVQ RET R +A + T V LSDAQA+LMQPG+ DI Sbjct: 1 MSIDRTQRLQPVPTVQARETPAENQLQPRKTAQTESAVSGTQVKLSDAQARLMQPGTQDI 60 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 ++ RV+A+K AIRNGELKMD GKIADAL+ + Q D Q Sbjct: 61 DMNRVDAIKQAIRNGELKMDAGKIADALLQDVQSDAQ 97 >UniRef50_D1NZL0 Negative regulator of flagellin synthesis n=4 Tax=Providencia RepID=D1NZL0_9ENTR Length = 100 Score = 78.7 bits (192), Expect = 5e-14, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 2/98 (2%) Query: 1 MSIDRTSPLKPVSTVQPRETTDA--PVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDI 58 M+I++TS + ++ V R+ DA P+ + + + A +S S+ Q KL+QP ++DI Sbjct: 1 MAIEQTSAISALTQVTTRDPQDATAPMRDKKISANEAVKESSFAPSELQKKLLQPQATDI 60 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQS 96 + +VE +K AI++G L MD GKIAD ++ +A + + S Sbjct: 61 DTAKVEKIKQAIKDGTLTMDAGKIADGILRDAHECMLS 98 >UniRef50_D2TYH3 Flagella synthesis protein FlgM n=1 Tax=Arsenophonus nasoniae RepID=D2TYH3_9ENTR Length = 97 Score = 76.0 bits (185), Expect = 3e-13, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTST--SVTLSDAQAKLMQPGSSDI 58 MSI++T+PL ++ + E + + T+ +++LS A KL+Q + DI Sbjct: 1 MSIEKTTPLSGITALSHHEEPQPQQKKVKQSATSEQKDPIFTLSLSGAAEKLLQANNKDI 60 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALIN 88 ++VE ++ I +GEL D KIAD LI Sbjct: 61 REQKVEQIRQKIEHGELTTDAEKIADVLIK 90 >UniRef50_P96974 Negative regulator of flagellin synthesis n=6 Tax=Enterobacteriaceae RepID=FLGM_PROMI Length = 99 Score = 75.3 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 3/97 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKT---TASTSTSVTLSDAQAKLMQPGSSD 57 MSI+RT+PL P++ + R + + + TSV LS+AQ KL+QP + D Sbjct: 1 MSIERTNPLIPITAISQRNLNEGAQEARKTGNAQTKAMAGDTSVKLSEAQKKLVQPSNQD 60 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 IN+E+V LK AI +G L MD+ KIA+AL EA + + Sbjct: 61 INVEKVARLKAAIADGTLTMDSSKIAEALFREAAESI 97 >UniRef50_C6C358 Anti-sigma-28 factor, FlgM n=1 Tax=Dickeya dadantii Ech703 RepID=C6C358_DICDC Length = 97 Score = 74.9 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 44/97 (45%), Positives = 68/97 (70%), Gaps = 3/97 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAK---TTASTSTSVTLSDAQAKLMQPGSSD 57 MSID T P+ V ++Q +++ T + + + + T V LS+AQ++LMQP S D Sbjct: 1 MSIDSTRPVSGVKSIQNKDSGLLQSTKGKTSSVTDNSETEQTQVNLSEAQSRLMQPSSQD 60 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 I+LE+VE++K AI++G+L++D GKIADAL+NEAQ D+ Sbjct: 61 IDLEKVESIKQAIKDGKLQIDVGKIADALLNEAQSDI 97 >UniRef50_Q46PG6 Anti-sigma-28 factor, FlgM n=3 Tax=Cupriavidus RepID=Q46PG6_RALEJ Length = 102 Score = 71.0 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 3/98 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQA---KLMQPGSSD 57 M I+ ++ +P T S TT+ S S S + +L D Sbjct: 1 MKINHSTSSRPADAPAADSTVRPQAGQSAPVATTSGVSVSPLASQVREIGSRLANETDDD 60 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 I+ +VE ++ AI G +K+D GKIAD L+ ++ Q Sbjct: 61 IDTAKVEEIRQAIAEGRIKIDPGKIADGLLATLRELSQ 98 >UniRef50_C1DHJ0 Anti-sigma-28 factor n=1 Tax=Azotobacter vinelandii DJ RepID=C1DHJ0_AZOVD Length = 95 Score = 69.1 bits (167), Expect = 4e-11, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M ID +S P +P + +A R A + + S +V ++ + DI++ Sbjct: 1 MKIDNSS--TPPGAARPTDNREAGPRIQRDAPASRTESPAV-VAHIGQSAETDATRDIDM 57 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINEAQQDLQS 96 RV ++ AI G L++ +IA LI+ ++ L Sbjct: 58 ARVVEIRQAIGEGRLQIRAERIAGGLIDSVRELLGD 93 >UniRef50_Q1QW26 Anti-sigma-28 factor, FlgM n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QW26_CHRSD Length = 118 Score = 69.1 bits (167), Expect = 4e-11, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 2 SIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLE 61 SI + S L P + E DA +R TA S+ +++ S DI++ Sbjct: 21 SILKISNLHPPTQTTQSEQGDAAQR-TRRGDDTAQASSPASITTLSQSNEADTSQDIDVG 79 Query: 62 RVEALKLAIRNGELKMDTGKIADALINEAQQDLQS 96 RV ++ AI +G+L++DTGKIAD LI+ + L Sbjct: 80 RVAEIRQAISDGQLELDTGKIADGLIDSVRDLLGD 114 >UniRef50_A1K953 Putative negative regulator of flagellin synthesis FlgM n=1 Tax=Azoarcus sp. BH72 RepID=A1K953_AZOSB Length = 98 Score = 68.7 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 1 MSIDRT-SPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDIN 59 M I+ + P+ VS + R + P T + A+ S+ + M+ + ++ Sbjct: 1 MKIESSGKPVAGVSVAENRGRVNTPKTETPASSDKVQLSSLSSTLQKAEAAME-NTPAVD 59 Query: 60 LERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 RV ++ AI G K+D+ KIAD LIN + L Sbjct: 60 SSRVAEIRQAIAEGRFKIDSSKIADGLINSVRDLLGDK 97 >UniRef50_D0FQ39 Negative regulator of flagellin synthesis (Anti-sigma-28 factor) n=2 Tax=Erwinia pyrifoliae RepID=D0FQ39_ERWPY Length = 99 Score = 67.9 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAK-----TTASTSTSVTLSDAQAKLMQPGS 55 MSIDRT+P + + N A T+ T V LS ++ S Sbjct: 1 MSIDRTTPAAAANAIAAVRDMRGRQLNQDAGNPVAHNTSGDDKTQVRLSSLVQQMKNDSS 60 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINE 89 +DI+ +RV ++ A+ GEL +D KIA AL+ + Sbjct: 61 NDIDEQRVAEIRAALDAGELPLDPQKIARALVMD 94 >UniRef50_B2JR17 Anti-sigma-28 factor, FlgM n=1 Tax=Burkholderia phymatum STM815 RepID=B2JR17_BURP8 Length = 100 Score = 67.2 bits (162), Expect = 1e-10, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Query: 1 MSIDRTSPLKPV-STVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDIN 59 M I+ ++ + R T DA + A S + + + + L +DI+ Sbjct: 1 MKIESSNNSITIHRPGAVRATNDAEAQGAVGAVRKTDAPLSGSSTVSLSTLPTASDADID 60 Query: 60 LERVEALKLAIRNGELKMDTGKIADALINEAQQDLQS 96 +VE++K A+R+G +D+ KIAD +++ A+ LQ+ Sbjct: 61 TAQVESIKAALRDGTYTVDSSKIADGMMSNARDLLQT 97 >UniRef50_Q2NX22 Negative regulator of flagellin synthesis FlgM n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NX22_SODGM Length = 74 Score = 66.4 bits (160), Expect = 2e-10, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 19/90 (21%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 MSI+RT P + V +TLSD + ++ + D++ Sbjct: 1 MSIERTLPAHAIMAVVNDLRH----------------GQEITLSDTRLQMRR---QDVDP 41 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINEA 90 V L+ AI G+L MD+G++ADAL+ A Sbjct: 42 NLVAQLQHAIGQGKLIMDSGRVADALLMNA 71 >UniRef50_B1XWK0 Anti-sigma-28 factor, FlgM n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XWK0_LEPCP Length = 106 Score = 66.0 bits (159), Expect = 3e-10, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 6/101 (5%) Query: 1 MSIDRTSPLKPVSTVQPRETT------DAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPG 54 M I +T+ ++ T+ + + S++V LS L++ Sbjct: 1 MKIGQTNAPPAITPAGSAATSSARAATEGARDSQGPRAAATDGSSTVQLSSTARALLEGA 60 Query: 55 SSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 + E+VE ++ +I +G K++ IAD LI A + L Sbjct: 61 DGTFDAEKVERVRQSISDGTYKINPDAIADKLIANAHEVLG 101 >UniRef50_A9ABN9 Negative regulator of flagellin synthesis n=14 Tax=Burkholderia RepID=A9ABN9_BURM1 Length = 112 Score = 66.0 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKT-------TASTSTSVTLSDAQAKLMQP 53 M ID T PV+ P + + A+ +A +V LS +L Sbjct: 1 MKIDTTPNPSPVAPASTGNGAARPQSGAAASTAPQASDAGSAGGDATVNLSGLSGQLRAQ 60 Query: 54 ---GSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 G +DI++ V+++K A+++G L +D KIAD ++N A++ LQ Sbjct: 61 SASGGADIDMGLVQSIKDALKDGTLTIDANKIADGVLNTARELLQQQ 107 >UniRef50_Q3SID6 Putative Anti-Sigma-28 factor, FlgM n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SID6_THIDA Length = 98 Score = 62.6 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 10/101 (9%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSS---- 56 M ID + P+ ++ R P + + T VTLS +L Q S Sbjct: 1 MKIDPGAQPIPLPSIDNR-----PAQARANGHASTAPQTDVTLSPQATQLKQLESQLAAI 55 Query: 57 -DINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQS 96 ++ RV+++K AI +G+ +DT IA+ L++ ++ L++ Sbjct: 56 PVVDRARVDSIKQAIASGQYTIDTANIAEGLLDSVKEMLRA 96 >UniRef50_C4KAU9 Anti-sigma-28 factor, FlgM n=1 Tax=Thauera sp. MZ1T RepID=C4KAU9_THASP Length = 99 Score = 61.4 bits (147), Expect = 8e-09, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%) Query: 1 MSIDRT-SPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDIN 59 M I+ + + P + + R + A + +A + +S++ S A+A+ + ++ Sbjct: 1 MKIESSGKAIAPSTAAEARPRSPASPGATVSAGSEKVQLSSLSSSLAKAEASIAQTPVVD 60 Query: 60 LERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 +RVE +K AI NGE ++D G+IAD LI+ ++ L Sbjct: 61 AQRVEEIKQAIANGEFRIDAGRIADGLIDSVREMLAGQ 98 >UniRef50_Q1LGX2 Anti-sigma-28 factor, FlgM n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LGX2_RALME Length = 126 Score = 61.0 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 6/100 (6%) Query: 2 SIDRTSPLKPVSTVQPRETTDAPVTNSRAAKT-TASTSTSVTLSDAQ-----AKLMQPGS 55 I+ + +P + + A+ TA T V+ AQ +L+Q Sbjct: 22 KINNSPSSRPTEPSASEGGARPAASGAAASSDPTALTGVRVSPLAAQVREIGTRLLQDSD 81 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 SDI++ +V ++ AI G +++D KIAD L+ + Q Sbjct: 82 SDIDVAKVAEVRKAIAEGRIQIDPSKIADGLLASLHELSQ 121 >UniRef50_Q2NR89 Negative regulator of flagellin synthesis FlgM n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NR89_SODGM Length = 104 Score = 60.6 bits (145), Expect = 1e-08, Method: Composition-based stats. Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 8/104 (7%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTS--------TSVTLSDAQAKLMQ 52 MSI+ + P++ ++ +Q + ++ A + + ++V+LSD +L + Sbjct: 1 MSIESSRPVQSLAPLQNIDGNTVQAQKNKTAASARNQENQENQENQSTVSLSDTLDQLQK 60 Query: 53 PGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQS 96 S DI++ +VE +K AIR+G L MD+GKIADALI++AQ L Sbjct: 61 QDSQDIDVAKVERIKDAIRDGSLTMDSGKIADALISQAQSMLDD 104 >UniRef50_B2T7A3 Anti-sigma-28 factor, FlgM n=5 Tax=Burkholderia RepID=B2T7A3_BURPP Length = 117 Score = 60.2 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Query: 15 VQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLM---QPGSSDINLERVEALKLAIR 71 + T+ S SV+LS L GS+DI+ VE++K AI+ Sbjct: 26 ATTANGNAQNAGTASQTTTSGSGGASVSLSGLSQHLRSLAASGSADIDTAHVESIKQAIK 85 Query: 72 NGELKMDTGKIADALINEAQQDLQSN 97 +G LK+D+GKIAD ++N A++ LQS Sbjct: 86 DGSLKIDSGKIADGVLNTARELLQSK 111 >UniRef50_UPI00016A6637 putative anti-sigma-28 factor, FlgM n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A6637 Length = 77 Score = 59.9 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 43 LSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 LS L G++DI+ V+++K A+ NG L +D KIAD ++N A++ L+ Sbjct: 18 LSGQLRTLSASGNADIDTGLVQSIKDALSNGTLTIDASKIADGVLNTARELLKQQ 72 >UniRef50_Q0ADD4 Anti-sigma-28 factor, FlgM n=2 Tax=Nitrosomonas RepID=Q0ADD4_NITEC Length = 100 Score = 57.9 bits (138), Expect = 9e-08, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 42/97 (43%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M I++ SP + N++ + + S ++ + A+ GS +N Sbjct: 1 MKINQISPGHTELAAGVAQKKVDRTDNAKVSTAGKNNSIHISTLLSGAQASNAGSETVNA 60 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 +V +K AI G K++ +AD L+ ++ +QS Sbjct: 61 AKVAEIKQAISEGRFKVNPDVVADRLLETVKELIQSK 97 >UniRef50_A9IKP4 Negative regulator of flagellin synthesis n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IKP4_BORPD Length = 120 Score = 57.9 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 2/91 (2%) Query: 7 SPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLM--QPGSSDINLERVE 64 S +PV P D P + + ++ +TS V LS A +L+ Q GSSDI++ERV Sbjct: 30 SSSRPVGAQAPGGRADTPAGAAPSTASSGATSAQVALSPASRQLLALQDGSSDIDVERVA 89 Query: 65 ALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 A++ AI +G+L++D G+IAD+LI A+ ++ Sbjct: 90 AIRAAIASGQLQIDAGRIADSLIASARDLVK 120 >UniRef50_C5CXV8 Anti-sigma-28 factor, FlgM n=1 Tax=Variovorax paradoxus S110 RepID=C5CXV8_VARPS Length = 61 Score = 56.4 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 44 SDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 S L + +SD + RV +++ IR G ++ +IA L+ + L N Sbjct: 5 SGQVHSLPEAPNSDFDAARVASIREDIRAGRYEIHPDRIARGLLASVRDLLHEN 58 >UniRef50_Q2L1C2 Negative regulator of flagellin synthesis n=4 Tax=Bordetella RepID=Q2L1C2_BORA1 Length = 95 Score = 54.5 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 4/97 (4%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLM--QPGSSDI 58 M I+ T L + D + + + ++S+ V LS A +L+ Q G SDI Sbjct: 1 MKINTT--LARPVAANTAQRPDNALAQAYGSGNGNASSSQVALSGASRQLLALQEGGSDI 58 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 ++ERV A++ AI G+L++D +IAD+LI A++ + Sbjct: 59 DVERVAAIRAAIAAGQLRIDPSRIADSLIASAKELTK 95 >UniRef50_Q2Y9F1 Anti-sigma-28 factor, FlgM n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y9F1_NITMU Length = 145 Score = 53.3 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 12/109 (11%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKT----------TASTSTSVTLSDAQAKL 50 + I+ + + V +++ A S ST + LS + Sbjct: 35 LKIENSIKTESAKPVHEGQSSPGKSGQRAVASAVTSGASSTSSANSISTDIQLSAQLKNI 94 Query: 51 MQ--PGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 + + RV +K AI G ++ K+AD L++ + ++ Sbjct: 95 EKNLAKGEVFDTHRVAEIKQAISEGRFTVNADKVADGLLDTVRDLIRRR 143 >UniRef50_C6MC99 Anti-sigma-28 factor, FlgM n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MC99_9PROT Length = 101 Score = 53.3 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 10/102 (9%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSD--- 57 M ID++ + +V D + + +V LS KL S+ Sbjct: 1 MKIDKSLQPVSIVSV-----NDGKRRTDITPNPSTNQENNVHLSPNATKLQTIDSATENG 55 Query: 58 --INLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 +N R++ +K AI G +++ +AD L+ ++ +QS Sbjct: 56 SIVNTARIQEIKQAISEGNFQINPEVVADRLLETVKELIQSK 97 >UniRef50_A6SXV9 Negative regulator of flagellin synthesis n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXV9_JANMA Length = 128 Score = 51.8 bits (122), Expect = 7e-06, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 4 DRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ--PGSSDINLE 61 D + + V + + T S++VTLS L +S + + Sbjct: 35 DASKKIAGVGVAATQTR----AGKAPEKADTGKVSSNVTLSSQVQALTSQVASASVFDAK 90 Query: 62 RVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 +V+ +K AI G+ +++ ++AD L++ + + + Sbjct: 91 KVDEIKAAIAGGQFQVNAERVADGLMDTVKDLISTR 126 >UniRef50_Q47I28 Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica RCB RepID=Q47I28_DECAR Length = 94 Score = 51.4 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%) Query: 16 QPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGEL 75 P + P T + ++ +V+LS+ L + IN R++ +K AI G Sbjct: 8 NPTTSAITPRTTATKTSAGSNAQEAVSLSNLSGSLQSSDTPPINSARIDEIKQAISEGRF 67 Query: 76 KMDTGKIADALINEAQQDLQSN 97 K++ IAD LI A+ + Sbjct: 68 KINPEAIADRLIESARDLVNGK 89 >UniRef50_C5V025 Anti-sigma-28 factor, FlgM n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V025_9PROT Length = 100 Score = 49.8 bits (117), Expect = 2e-05, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQP--GSSDI 58 M ID+ S P + +S AA+ ++ + + + +K+ + I Sbjct: 1 MKIDKPSNSPPAGLMNETSARTPSAKSSPAAQEPGTSVSLGSTASQLSKMEASMSNTPVI 60 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 + +V +K AI G ++++G IAD LI + + S Sbjct: 61 DANKVAQIKQAISEGRFQVNSGVIADRLIQSVRDLISSQ 99 >UniRef50_A6GSX4 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GSX4_9BURK Length = 96 Score = 49.8 bits (117), Expect = 2e-05, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 MSI+R +P + + + + + T S LS ++L G+ N Sbjct: 1 MSINRINPGSNPIDKLTKPQGGSKSASVGSTEKTGSEGAVAKLSGQSSELSAAGAP-FNA 59 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 E+V +K AI GE K++ +A +I A++ L Sbjct: 60 EKVAEIKEAISKGEFKVNAEAVAAKVIESARELLGQK 96 >UniRef50_B2UJX6 Anti-sigma-28 factor, FlgM n=5 Tax=Ralstonia RepID=B2UJX6_RALPJ Length = 106 Score = 49.8 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 5/102 (4%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDA-----QAKLMQPGS 55 M I+ P + T+ + S +TA++ ++ D Q Q GS Sbjct: 1 MKINHIVNNAPAAVPTKDATSGSTRAASTTPASTAASGSARHSGDTPSLSVQRVSRQVGS 60 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 D + RVE ++ AI++G LKMD GKIADA ++ AQ L + Sbjct: 61 GDFDAARVEQIRSAIQSGTLKMDAGKIADAALSAAQSLLSTR 102 >UniRef50_Q7NZC2 Negative regulator of flagellin synthesis n=2 Tax=Chromobacterium group RepID=Q7NZC2_CHRVO Length = 99 Score = 49.5 bits (116), Expect = 3e-05, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS---SD 57 M ID + L + Q + + A ++S +A + +L+ + + S Sbjct: 1 MKIDNSGKLSGTYSTQSKPSPRASSSSSSSASAKDDSVKIDSLASKLSAIGNDPSAQQPS 60 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 + +VE +K AI NG ++ KIAD LI+ AQ+ L Sbjct: 61 FDAAKVEQIKSAIANGSFSINADKIADGLISSAQELL 97 >UniRef50_C6P5F7 Anti-sigma-28 factor, FlgM n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P5F7_9PROT Length = 105 Score = 49.5 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 6/103 (5%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTAS-TSTSVTLSDAQAKLMQ-----PG 54 M I++TS P + + ++ +TA + TSV L A+L Sbjct: 1 MKIEKTSKPLPTPAAGETGSRASAARSADNKDSTAENSGTSVHLGSTTAQLRSMESSIAS 60 Query: 55 SSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 S ++ ++V +K AI G K+++G +AD LIN Q + ++ Sbjct: 61 SPLVDAKKVTEIKQAISEGRFKVNSGIVADRLINSVQDLITAS 103 >UniRef50_C1DCU3 FlgM n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DCU3_LARHH Length = 98 Score = 49.1 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M I P QP ++A ++ A K S + ++ Q + + Sbjct: 1 MKIHSQLPPALQPAAQPGNRSNATGRSNVADKND-QVSINPLVNRVQTAAAGETAPAFDA 59 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 +++A+K AI GE ++ IAD LI A++ L + Sbjct: 60 GKIDAIKSAIARGEFSINADAIADGLIASARELLSAQ 96 >UniRef50_A4G6B6 Putative negative regulator of flagellin synthesis (Anti-sigma-28 factor) FlgM-like n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G6B6_HERAR Length = 102 Score = 48.7 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 3/100 (3%) Query: 1 MSID-RTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQP--GSSD 57 M ID + + + + A ++ + S +VTLS L +S Sbjct: 1 MKIDDSSKKTAGIGVSTTQTRAGKGTEKAAGASSSKAPSANVTLSTQVQALTSQVSSASV 60 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 + ++VE +K AI G+ +++ ++AD L++ + + + Sbjct: 61 FDTKKVEEIKAAIAGGQFQVNAERVADGLMDTVKDLISAR 100 >UniRef50_A5IG06 Negative regulator of flagellin synthesis n=5 Tax=Legionella RepID=A5IG06_LEGPC Length = 106 Score = 48.3 bits (113), Expect = 7e-05, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 5/93 (5%) Query: 3 IDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS-----SD 57 +++ + + + +A ++ +++ SV LS +L + + Sbjct: 11 VNQINDSANLRHIDMDNRINANHKEVKSPVLENNSTDSVNLSSTSKQLEALKASLKDLPE 70 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEA 90 IN RV K I++G+ ++D+ KIA ++N Sbjct: 71 INEARVLYFKAEIQSGQYEIDSSKIAHGMLNSV 103 >UniRef50_Q1GZW8 Anti-sigma-28 factor, FlgM n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GZW8_METFK Length = 100 Score = 47.9 bits (112), Expect = 9e-05, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 8/102 (7%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ-----PGS 55 M ID L+ + +T + P + SVTLS A+L Sbjct: 1 MKID--DALQKAVALNNDKTENRPAP-RASENKAPVAGESVTLSPLAAQLQSIEAAGASE 57 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 + ++V A+K AI +G+ ++D+ K+AD LIN + L + Sbjct: 58 QVYDADKVNAIKSAISSGQFRVDSEKVADGLINTVKDLLTAQ 99 >UniRef50_C4KMX4 Anti-sigma-28 factor, FlgM n=33 Tax=Burkholderia RepID=C4KMX4_BURPS Length = 114 Score = 47.9 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%) Query: 5 RTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVE 64 S + P + A + + LS L GS+DI+ +V+ Sbjct: 16 NASAGAARTQAGQPAAAQTPAGAAGAPTGGDANVSLSGLSSTLRSLAASGSADIDTAQVD 75 Query: 65 ALKLAIRNGELKMDTGKIADALINEAQQDLQS 96 A++ AI++G L +DTGKIAD ++ A+ L+ Sbjct: 76 AIRDAIKSGTLSIDTGKIADGILQTARDLLKQ 107 >UniRef50_A4A620 Negative regulator of flagellin synthesis FlgM n=2 Tax=unclassified Gammaproteobacteria RepID=A4A620_9GAMM Length = 108 Score = 47.9 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%) Query: 20 TTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSS-----DINLERVEALKLAIRNGE 74 T P S + S SV+++ +L+ + ++ RV++++ AI NG Sbjct: 29 TNSRPAPGSAKDAASVSDGESVSITGTATELLSLENQLKALPGVDQARVDSIREAISNGS 88 Query: 75 LKMDTGKIADALINEAQQD 93 +D +I D+L+ + Sbjct: 89 YSVDPERIVDSLLKSEVEL 107 >UniRef50_B7VKL5 Polar flagellar FlgM homolog n=56 Tax=Vibrionales RepID=B7VKL5_VIBSL Length = 140 Score = 47.5 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 5/96 (5%) Query: 3 IDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ-----PGSSD 57 I L + R + + + S A+ + ++ +V+LS + Q Sbjct: 42 IRSGQTLASTNRSTVRSDSKSEASRSDASSKSPASKDAVSLSQQGKAIGQLHQEMAAQPS 101 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQQD 93 + +V A+K AI NG +D K+AD ++ + Sbjct: 102 FDSVKVAAIKEAIANGSYTVDPEKLADNMMKFENEL 137 >UniRef50_C6WVB2 Anti-sigma-28 factor, FlgM n=2 Tax=Methylophilaceae RepID=C6WVB2_METML Length = 112 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Query: 10 KPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ-----PGSSDINLERVE 64 + + + + ++ S S +VTLS AKL S+ + E+V+ Sbjct: 18 ASIEKANAAKVEADAKQKAGKSASSESASGNVTLSPLSAKLQTLETKVKASNVYDTEKVD 77 Query: 65 ALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 A+K AI NG+ +++ K+A+ LI + L S Sbjct: 78 AIKSAIANGQFSVNSEKVAEGLIETVKDLLTSR 110 >UniRef50_C7RLC7 Anti-sigma-28 factor, FlgM n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RLC7_9PROT Length = 93 Score = 46.8 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 9/98 (9%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS-SDIN 59 M I+ T+ T + AK A + V LS+ A+L G + + Sbjct: 1 MKIESTT--------STASTIGEARPRTTVAKPAAGAAAEVHLSELAAQLQGSGDVASFD 52 Query: 60 LERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 RV +K AI G ++ IAD LI+ A + + S Sbjct: 53 AARVSEIKQAIAEGRFTINPEAIADRLISSASELVDSQ 90 >UniRef50_C9RAY7 Anti-sigma-28 factor, FlgM n=1 Tax=Ammonifex degensii KC4 RepID=C9RAY7_AMMDK Length = 99 Score = 46.4 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 7/96 (7%) Query: 1 MSIDRTS-----PLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS 55 M IDRT + + E+ T + + +++L+ + +L Q Sbjct: 1 MKIDRTELQKLLQIYGTEQARREESKRDKAKAPEEGVTLSLSPEALSLNRLREELRQL-- 58 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINEAQ 91 ++ ERV LK I GE + D KIA+ ++ E + Sbjct: 59 PEVREERVRDLKEKIERGEYRPDPRKIAEGMLQEHR 94 >UniRef50_C2ED80 Putative uncharacterized protein n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ED80_9LACO Length = 95 Score = 46.4 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 10/97 (10%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLM-----QPGS 55 M I R+ + T ++ ++ +++ + LSD KL+ Q Sbjct: 1 MKIQRSY-----TEYTNLPTVKGSKNVAKQSQAINASNDKINLSDTAKKLLCRAEVQSSH 55 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINEAQQ 92 S I+ ++V LK AI +G ++ KIAD +++ + Sbjct: 56 SGIDPDKVARLKAAINDGSYQVSAEKIADKMLDAVDE 92 >UniRef50_C5SD58 Anti-sigma-28 factor, FlgM n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD58_CHRVI Length = 101 Score = 46.0 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 13 STVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKL--MQPGSSD--INLERVEALKL 68 + + + SVTL+D L ++ G+ D I+ RV +K Sbjct: 16 PAAGGKPRGSPLQADQTPVTPKEAAGESVTLTDTAKTLSSLRGGAQDAPIDKTRVAEIKS 75 Query: 69 AIRNGELKMDTGKIADALIN 88 AI G +D ++A ++++ Sbjct: 76 AIAEGRYTIDNQRLAKSILD 95 >UniRef50_Q3SIB7 Putative Anti-Sigma-28 factor, FlgM n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SIB7_THIDA Length = 102 Score = 46.0 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 5/100 (5%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M ID+ + P + + T + +A S ++T S ++ + ++ + +++ Sbjct: 1 MKIDK--RITPPAAAKVSSTKGKGAGKTPSAPAGGGDSLTLTESSSRIRSLESQLASVDV 58 Query: 61 ---ERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 +VE++K A+ NG +D +AD LI+ ++ L+ Sbjct: 59 TDAGKVESVKAALANGTFAVDAEVVADRLIDHTKETLRKR 98 >UniRef50_A5L6N0 Putative uncharacterized protein n=2 Tax=Vibrionales RepID=A5L6N0_9GAMM Length = 95 Score = 45.6 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 1/82 (1%) Query: 2 SIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLE 61 +D + P + V + K + V L D L G DI+ Sbjct: 5 KVDNVKHVVPHTQVDVVQNKKTEPDQKAKVKPINLSQHEVELLDNTKSLF-DGVEDIDTA 63 Query: 62 RVEALKLAIRNGELKMDTGKIA 83 +VE +K I GEL D ++A Sbjct: 64 KVEQIKAQISAGELVFDMDELA 85 >UniRef50_B7WY20 Anti-sigma-28 factor, FlgM n=2 Tax=Comamonas testosteroni RepID=B7WY20_COMTE Length = 104 Score = 45.2 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAK---TTASTSTSVTLSDAQAKLMQPG--S 55 M I L+ + + A + + + + V+ S + L + Sbjct: 1 MKIGNKPDLQQTAAAAKQAPKSATTVATEESTKGLSERTAGVPVSFSSSARALDSQSRTN 60 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 +D + +RV+A++ AI NG +++ +AD L+ ++ L Sbjct: 61 TDFDADRVKAMREAIANGSFRVNAEAVADKLLANTEEFL 99 >UniRef50_B7IG10 Negative regulator of flagellin synthesis FlgM n=1 Tax=Thermosipho africanus TCF52B RepID=B7IG10_THEAB Length = 85 Score = 44.8 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 27 NSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADAL 86 + K S ++ + + ++ + V LK AI NG K+D KIA A+ Sbjct: 25 RKKNGKDKVDFSATLEIKKLLYESKNI--PEVREKLVNELKQAIENGTFKIDPEKIAKAI 82 Query: 87 I 87 + Sbjct: 83 L 83 >UniRef50_C9YEL2 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YEL2_9BURK Length = 109 Score = 44.8 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 6 TSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQP--GSSDINLERV 63 TS + + + + A N+ AA++T S +VT+S A L +P +D++ +V Sbjct: 14 TSTVSGAAQKAAQNSNAAANANTNAAQSTRSAGVAVTVSTAARALEKPERNDADVDTAKV 73 Query: 64 EALKLAIRNGELKMDTGKIADALINEAQQDL 94 ++K AI++G ++ IAD L++ AQ+ L Sbjct: 74 ASVKAAIQDGTYTVNAEAIADKLLSNAQEML 104 >UniRef50_A6GT68 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GT68_9BURK Length = 98 Score = 44.8 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%) Query: 12 VSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIR 71 + + + A S V++S + ++ ++ + ++VE ++ + Sbjct: 14 PDPKKADALAASRPPEVKTAADRDGASVVVSISRPRGTMLVDSTTPFDADKVEMIRRQLS 73 Query: 72 NGELKMDTGKIADALINEAQQDLQ 95 G LK+D +AD +IN+ + L Sbjct: 74 EGGLKIDANIVADRMINDQKALLG 97 >UniRef50_C6D595 Anti-sigma-28 factor, FlgM n=2 Tax=Paenibacillus RepID=C6D595_PAESJ Length = 88 Score = 44.5 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 8/89 (8%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ--PGSSDI 58 M I+ T+ + + Q + V +S +++ +S Sbjct: 1 MKINETNRIGAYNPYQ------KQMEQRIDGANKKKQKDIVEISAEAKEMLSTSQTNSPE 54 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALI 87 +R+E LK +I G K+D GKIAD L+ Sbjct: 55 RQQRLEELKQSISAGTYKVDAGKIADKLL 83 >UniRef50_B3PGT3 Putative negative regulator of flagellin synthesis FlgM n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PGT3_CELJU Length = 104 Score = 44.1 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 10/99 (10%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSR-----AAKTTASTSTSVTLSDAQA-----KL 50 M+ D + + + + R AP T + A V LS + Sbjct: 1 MNFDTNNSIGALGSKTTRGKVSAPTTEGKSTTPEKAAARTDIGDQVVLSQEAQSAGRLQA 60 Query: 51 MQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINE 89 D NLERV ++ AI G +++ +IA+ ++N+ Sbjct: 61 KINSLPDANLERVAEIRRAIAEGRFEINPERIAENMLNQ 99 >UniRef50_B1YLK8 Putative anti-sigma-28 factor, FlgM n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YLK8_EXIS2 Length = 82 Score = 44.1 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 7/88 (7%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M ID T + T + + + + S+ A+L ++ Sbjct: 1 MRIDSTKWVNMPKTYERNQKVEGTEPTRTNRPDEVTISSE-------ARLRFNETTPSRT 53 Query: 61 ERVEALKLAIRNGELKMDTGKIADALIN 88 E++E+L+ AI++G K D KIA+ +N Sbjct: 54 EKIESLRQAIQDGTYKPDAKKIAERFLN 81 >UniRef50_B1I5H8 Anti-sigma-28 factor, FlgM n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5H8_DESAP Length = 98 Score = 43.7 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 7/94 (7%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ-----PGS 55 M ID+T + ++ + R+ D A SV LSD +L Sbjct: 1 MKIDKTGGVD-LTRIYGRQIVDRKPGEHPRT-EGAEERDSVELSDQARELQAYRQKLAEL 58 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINE 89 + E VE LK I+ G D KIA L+ E Sbjct: 59 PAVRTELVERLKAEIQAGTYDADAEKIAAGLVRE 92 >UniRef50_A6LJU5 Putative anti-sigma-28 factor, FlgM n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LJU5_THEM4 Length = 83 Score = 43.7 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Query: 38 STSVTLSDAQAKLMQPGS--SDINLERVEALKLAIRNGELKMDTGKIADALI 87 ++ + S KL++ ++ E V+ LK AI+NG K+D KIA +++ Sbjct: 30 ASDFSSSLEIKKLLKDAKEIPEVRQELVDKLKDAIKNGTFKVDPEKIAKSIL 81 >UniRef50_A3W2C7 Putative FlgM, negative regulator of flagellin synthesis n=2 Tax=Roseovarius RepID=A3W2C7_9RHOB Length = 100 Score = 43.7 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 3/97 (3%) Query: 2 SIDRTSPLKP-VSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ--PGSSDI 58 S++ + +P + V ++ S ++ S + + + Sbjct: 4 SVNSSHAARPRLMPVSTESAPGGASGTRAHQPVSSVDSVKLSTSASIGVIERMVDQGPPF 63 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 + ERV +K A+ NG +D +IAD++ + ++ Sbjct: 64 DAERVSRIKDAVANGNYPVDAKRIADSIFQDYSAMMR 100 >UniRef50_A8U601 Putative uncharacterized protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8U601_9LACT Length = 100 Score = 43.3 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDIN- 59 M I + V+ V+ + ++ +T S +V +SDA +L + S++ + Sbjct: 1 MKIGNNGYNQYVNNVRQNQENTHSKGLAKTTETVNEESVTVDISDAAKQLAKAKSAESSA 60 Query: 60 -LERVEALKLAIRNGELKMDTGKIADALINE 89 VEA+K A+ NG + KIA+ ++ Sbjct: 61 MTPNVEAIKKAVLNGTYTVSPEKIANGMMQA 91 >UniRef50_Q2SD55 Negative regulator of flagellin synthesis (Anti-sigma28 factor) n=2 Tax=Gammaproteobacteria RepID=Q2SD55_HAHCH Length = 104 Score = 43.3 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 27 NSRAAKTTASTSTSVTLSDAQAKLMQPGSS-----DINLERVEALKLAIRNGELKMDTGK 81 N+ A + + + V LS + + D++ ERVE +K A+ +G ++++ Sbjct: 33 NAAAPEKSGDSGDKVVLSSQAQNIRKVEQQLAKLPDVDNERVEKIKKALADGSYQINSRS 92 Query: 82 IADALINEAQQ 92 +A+ L+N Q Sbjct: 93 VAEKLLNFEQD 103 >UniRef50_Q21S41 Anti-sigma-28 factor, FlgM n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21S41_RHOFD Length = 108 Score = 43.3 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%) Query: 5 RTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVE 64 ++ A T ++ A++ T TL+ + +S I+ ++V Sbjct: 14 SSNATPAPPKGGQSPAATATATAAQNAQSAGVAVTVSTLARSLGADKAGEASVIDAKKVA 73 Query: 65 ALKLAIRNGELKMDTGKIADALINEAQQDL 94 +++ AI G ++ IAD L+ AQ+ L Sbjct: 74 SVRSAIEQGTFVVNAEAIADKLLANAQEML 103 >UniRef50_A1TVH0 Anti-sigma-28 factor, FlgM n=5 Tax=Comamonadaceae RepID=A1TVH0_ACIAC Length = 113 Score = 42.9 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 40 SVTLSDAQAKLMQP--GSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 VT S A L S+D + +V+A++ AI G +D IAD L++ AQ+ + Sbjct: 50 PVTFSSAAKALDPSLRSSADFDANKVKAVRAAIEKGTFTVDAEAIADKLLSNAQETI 106 >UniRef50_B9K750 Anti-sigma-28 factor, FlgM n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K750_THENN Length = 95 Score = 42.9 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 7/96 (7%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDA----QAKLMQPGSS 56 M ID + + V+ + E P K + + L + S Sbjct: 3 MVIDGVNGPREVNPL---EGIKGPSVEKSKEKKKSEQGDRIELRHTWSVEELTKEAKNIS 59 Query: 57 DINLERVEALKLAIRNGELKMDTGKIADALINEAQQ 92 I E VE L+ AI +G +DT ++A ++ E + Sbjct: 60 SIREELVEELRKAIESGNYFVDTERLARKILEELSE 95 >UniRef50_Q315F7 Putative anti-sigma-28 factor, FlgM n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q315F7_DESDG Length = 101 Score = 42.9 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 7 SPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQP-----GSSDINLE 61 + L P + + R + ++S V+LS+ + + +I E Sbjct: 8 NKLDPYQAKLEKADSKNTGDARRKSGDSSSGGDRVSLSNDARLRTEAYTGALSTPEIRHE 67 Query: 62 RVEALKLAIRNGELKMDTGKIADALINEAQQDL 94 +V +K I +GE ++D+ IA L+ + L Sbjct: 68 KVAEIKDRIASGEYRIDSKDIARKLLRDETDFL 100 >UniRef50_C4RWR9 Negative regulator of flagellin synthesis (Anti-sigma28 factor) n=2 Tax=Yersinia RepID=C4RWR9_YERBE Length = 86 Score = 42.9 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 39/77 (50%) Query: 13 STVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRN 72 + + +S++ + ++ T V LS ++ S DI+ +R+ ++ ++ Sbjct: 6 APQDLKLRPRTAELSSQSIVSNENSGTQVKLSKLTNQIQTDSSRDIDYDRLAKIQASMDA 65 Query: 73 GELKMDTGKIADALINE 89 GEL +D+ KIA+ L+ + Sbjct: 66 GELVLDSDKIANVLVQD 82 >UniRef50_B9KJB0 FlgM, negative regulator of flagellin synthesis n=4 Tax=Rhodobacter sphaeroides RepID=B9KJB0_RHOSK Length = 76 Score = 42.5 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 24 PVTNSRAAKTTASTSTSVTLSDAQAKLMQP--GSSDINLERVEALKLAIRNGELKMDTGK 81 A + ++ +V LS A + ++LE V+ +K AI G+ +D + Sbjct: 3 RSLAGAATGSARASGETVELSAAALATPEELRSGPPVDLELVQKIKDAIAEGKYPVDLER 62 Query: 82 IADALINEAQQD 93 I DAL + Sbjct: 63 ITDALFADYLDL 74 >UniRef50_B0TPI4 Putative uncharacterized protein n=3 Tax=Shewanella RepID=B0TPI4_SHEHH Length = 95 Score = 42.5 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 2 SIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVT---LSDAQAKLMQPGSSDI 58 I+ T + ++ + P+ A+ S + +Q L Q D Sbjct: 5 KINSTINAEMGTSKSKTQGFIQPLETPVFAEIKPQQEVSADCRLIEHSQQSLEQL--PDF 62 Query: 59 NLERVEALKLAIRNGELKMDTGKIADALI 87 +L +V ++ ++ +G ++D K+ADA++ Sbjct: 63 DLAKVAEVRQSLIDGSFELDIDKLADAMV 91 >UniRef50_A4SI21 Lateral flagella anti-sigma-28 factor, LfgM n=2 Tax=Aeromonas RepID=A4SI21_AERS4 Length = 91 Score = 42.1 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M I RT PL + +Q + + +RA++ A ST+ + + +SD+++ Sbjct: 1 MKITRTDPLYVQTQLQRKPESATTQPQARASQADAQISTTAQFVNQARAQL-ATTSDVDM 59 Query: 61 ERVEALKLAIRNGELKMDTGKIADALIN 88 E+V ++ AI +G+L++D ++ A+++ Sbjct: 60 EKVNQIRQAISDGKLELDMDALSQAILD 87 >UniRef50_A7HNK5 Putative anti-sigma-28 factor, FlgM n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HNK5_FERNB Length = 95 Score = 42.1 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Query: 2 SIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKL----MQPGSSD 57 I++ + L +Q + N +K S S+ + + + M + Sbjct: 4 KINKLNQLLGNQNIQETKKIGKEEKNVEKSKVETQKSDSLVIEEGKKVAEYIEMAKNYPE 63 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALI 87 + E V+ +K AI NG +D KIA ++ Sbjct: 64 VRSELVQQIKQAIENGTFVVDAEKIAKKIL 93 >UniRef50_Q1YV92 Negative regulator of flagellin synthesis FlgM, putative n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV92_9GAMM Length = 101 Score = 42.1 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 21 TDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTG 80 T + A A+ + V LS+ M G D + +VE +K A+ G +D Sbjct: 28 TANSAADHANATKGATGNDEVILSNTAKSAMAAG--DFDAAKVEEIKTALAEGSYPLDPR 85 Query: 81 KIADALIN 88 +IA++ + Sbjct: 86 RIAESFVA 93 >UniRef50_C6J2I9 Anti-sigma-28 factor FlgM family protein n=2 Tax=Bacillales RepID=C6J2I9_9BACL Length = 95 Score = 42.1 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 8/100 (8%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDIN- 59 M I+ T + ++ + + A V++S +L++ I+ Sbjct: 1 MKINETGRVGAIN-----NYQRQIDSQRKDTDNKARRKDEVSISAEAKELLKAQEVGIDP 55 Query: 60 --LERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 ER+E LK + G +++ K+AD L+ + L Sbjct: 56 ERAERIEELKAQVSAGTYQVEARKLADKLVPYFKSFLNEK 95 >UniRef50_A3Y8T2 Putative negative regulator of flagellin synthesis n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8T2_9GAMM Length = 103 Score = 42.1 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Query: 15 VQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS-----SDINLERVEALKLA 69 +Q + T+ A K+ +V LS A + S D+++E+VE +K A Sbjct: 20 LQKADDEQKSSTSITAEKSGTLADDTVKLSGAAQSMQTHQSKIQNMPDMDMEKVEQIKQA 79 Query: 70 IRNGELKMDTGKIADALIN 88 I G+ K+D+ K+A ++ Sbjct: 80 IAAGQYKVDSEKLASNMVA 98 >UniRef50_C1A589 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A589_GEMAT Length = 94 Score = 42.1 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M I+ + P +++ T S SV +SDA +L I+ Sbjct: 1 MKINSYIDTLRTTPANPTAVPRPAQEVTQSPATRPVKSDSVQISDAGRRLNAEQREAIDP 60 Query: 61 ERVEALKLAIRNGEL 75 ERV L+ + +G Sbjct: 61 ERVAELRQKVLSGAY 75 >UniRef50_Q1N309 Negative regulator of flagellin synthesis (Anti-sigma28 factor) n=1 Tax=Bermanella marisrubri RepID=Q1N309_9GAMM Length = 101 Score = 41.8 bits (96), Expect = 0.006, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 7/95 (7%) Query: 1 MSIDR-TSPLKPVSTVQPRETTD-APVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS--- 55 M+I++ T+ + + E D A ++ +++S+S V LS + Q + Sbjct: 1 MNINKLTNGIGGGGQSRSTEQVDKANAQVKKSDSSSSSSSDEVKLSAQSKSIQQIEAEVA 60 Query: 56 --SDINLERVEALKLAIRNGELKMDTGKIADALIN 88 DI+ VE +K A+ N E K+D +IA +I Sbjct: 61 KMPDIDDAAVERIKGALANNEYKIDYERIAGKMIK 95 >UniRef50_A5P6K2 Putative uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6K2_9SPHN Length = 95 Score = 41.4 bits (95), Expect = 0.008, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%) Query: 13 STVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRN 72 + RET + + A+ + A ++ + PG++ ++ +RV ++ A+ Sbjct: 11 GAIARRETGVSAAAKAAPTGKNAAEAHEAQAPVATSRRVAPGNAPVDQDRVAEIRKALET 70 Query: 73 GELKMDTGKIADALINE 89 G + K+ADA+I Sbjct: 71 GTYPLIPAKVADAIIAA 87 >UniRef50_Q6MQD5 FlgM, negative regulator of flagellin synthesis n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQD5_BDEBA Length = 109 Score = 41.4 bits (95), Expect = 0.008, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 6 TSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKL-----MQPGSSDINL 60 +S + ++ + + S+ V LS + + + D++ Sbjct: 17 SSRADNAAGIKGKADNIGAAKADVLTSSNLGESSRVELSPRAQEAKRIKELALATPDVDE 76 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINE 89 +V + I G+ K+D IAD +++E Sbjct: 77 AKVAKFRALIDEGKYKVDAKAIADKMVDE 105 >UniRef50_Q2BQU5 Negative regulator of flagellin synthesis FlgM, putative n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQU5_9GAMM Length = 101 Score = 41.4 bits (95), Expect = 0.008, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 5/88 (5%) Query: 6 TSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ-----PGSSDINL 60 TS + + E A ++ ++ +S +V LS A L + D++ Sbjct: 9 TSSQTAGTRARTGENDAAKSGSATPTQSPSSKGDTVKLSGAAQALQNVEKQLANTPDVDS 68 Query: 61 ERVEALKLAIRNGELKMDTGKIADALIN 88 +RVE LK I +G +++ ++A+ ++N Sbjct: 69 DRVEQLKRDIESGNYQINAERVAEKMLN 96 >UniRef50_A0Z350 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z350_9GAMM Length = 105 Score = 41.4 bits (95), Expect = 0.009, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 15 VQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSD-----INLERVEALKLA 69 + + + ++ A V L+D +L +++E+VEA++ Sbjct: 21 AAEARSEENRGSTAKTAAPAVMGDDRVELTDTATRLSALADDVRAASGVDVEKVEAIRQR 80 Query: 70 IRNGELKMDTGKIADALINEAQQDL 94 I +G+ ++D G+IADALI + Q+ + Sbjct: 81 IADGDYEIDAGQIADALIRQEQELV 105 >UniRef50_A4BEK7 Negative regulator of flagellin synthesis FlgM n=1 Tax=Reinekea blandensis MED297 RepID=A4BEK7_9GAMM Length = 103 Score = 41.4 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 13 STVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS-----SDINLERVEALK 67 + + A + ++ + V LSD L S DI+ ++V+ ++ Sbjct: 18 TQKNADAESLANAKSGNGTESAKQSDDVVELSDRARVLKAVESRVNQMPDIDQDKVDRIR 77 Query: 68 LAIRNGELKMDTGKIADA 85 AI NGE ++D K+A A Sbjct: 78 NAISNGEYQIDYDKLAAA 95 >UniRef50_Q3J7Q9 Anti-sigma-28 factor, FlgM n=2 Tax=Nitrosococcus oceani RepID=Q3J7Q9_NITOC Length = 107 Score = 41.0 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 13 STVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRN 72 ++ T A +T T T+ L + +A L G S ++ ++VE +K AI Sbjct: 27 PASSHPKSAGDSPTGQPAVETVTLTHTTTQLRETEASL--AGISVVDNQKVEQIKQAILE 84 Query: 73 GELKMDTGKIADALINEAQQDLQ 95 G ++D+ +IAD LI + + Sbjct: 85 GSYQIDSERIADKLIALEKSLSK 107 >UniRef50_A1TZU6 Anti-sigma-28 factor, FlgM n=3 Tax=Marinobacter RepID=A1TZU6_MARAV Length = 108 Score = 40.6 bits (93), Expect = 0.015, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 15 VQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS-----SDINLERVEALKLA 69 +T+ AP A++ A+ +V LS+ L Q +++ +R+E ++ A Sbjct: 23 ASGNQTSQAPTGEQAKAQSPAARGENVNLSNQAKNLKQLEQKLGDYPEMDDDRIEQIRSA 82 Query: 70 IRNGELKMDTGKIADALI 87 + NG K+D K+A ++ Sbjct: 83 LENGTYKVDAQKLAQKML 100 >UniRef50_Q3IDV4 Putative negative regulator of flagellin synthesis n=3 Tax=Alteromonadales RepID=Q3IDV4_PSEHT Length = 106 Score = 40.6 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 20 TTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ-----PGSSDINLERVEALKLAIRNGE 74 D T + + + S SV+L+ +L S + ++V LK AI G+ Sbjct: 26 QRDNANTQAAQSSAPKAASDSVSLTPQAKQLKTLQDKAQQSPGFDTDKVAELKKAITEGK 85 Query: 75 LKMDTGKIADAL 86 ++D+ K+A L Sbjct: 86 YQIDSEKLAKNL 97 >UniRef50_D0L0Z8 Anti-sigma-28 factor, FlgM n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0Z8_HALNC Length = 104 Score = 40.6 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 16 QPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ-----PGSSDINLERVEALKLAI 70 + A + A ++S V LS + Q S + +V+ +K I Sbjct: 21 RNTGKPTAAASPEGTAPESSSEDAGVNLSSGATAMKQLTQTLASSPSFDQSKVDQIKSMI 80 Query: 71 RNGELKMDTGKIADALI 87 NG+ +D KIA + Sbjct: 81 ANGQYSIDPQKIAQKFM 97 >UniRef50_A4J795 Putative anti-sigma-28 factor, FlgM n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J795_DESRM Length = 97 Score = 40.6 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 9/94 (9%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS----- 55 M I+ P V + D ++ K + + SV LS + + Sbjct: 1 MKINGYKPTGEVFKAYQQNKVDKN----KSNKASQPAADSVQLSHEAKFKKEIENTLKEL 56 Query: 56 SDINLERVEALKLAIRNGELKMDTGKIADALINE 89 ++ + V LK I+ G K D KIAD ++ E Sbjct: 57 PEVREDIVNKLKKEIQAGTYKPDAHKIADGILQE 90 >UniRef50_A4XW93 Anti-sigma-28 factor, FlgM n=21 Tax=cellular organisms RepID=A4XW93_PSEMY Length = 111 Score = 40.6 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 8/87 (9%) Query: 10 KPVSTVQPRETTDAPVTNSRAAK---TTASTSTSVTLSDAQAKLMQPGS-----SDINLE 61 + R P TTA + SV LS +L + G ++ E Sbjct: 20 TGATQAGNRNEAAQPTKAPVTGSDEQTTAKSGESVQLSREAQQLQKIGEKLRDQPIVDKE 79 Query: 62 RVEALKLAIRNGELKMDTGKIADALIN 88 RV LK AI +G ++D+ ++A L++ Sbjct: 80 RVAQLKQAIADGSYQVDSKRVAQKLLD 106 >UniRef50_A7JZA4 LfgM n=16 Tax=Vibrio RepID=A7JZA4_VIBSE Length = 93 Score = 40.6 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Query: 1 MSIDRTSPLK-PVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDIN 59 M ID+ + P + +Q V A + +V + AQA++ D++ Sbjct: 1 MKIDKVAGGHVPQTKLQQASKQPVDVVEQSKVHEPAFQANTVAIDRAQAEM--ASLPDVD 58 Query: 60 LERVEALKLAIRNGELKMDTGKIADALIN 88 +E+VE ++ A+ GEL +DT ++ A++ Sbjct: 59 MEKVEQVRNALARGELSLDTKALSKAIMQ 87 >UniRef50_Q1MQP0 Putative uncharacterized protein flgM n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQP0_LAWIP Length = 105 Score = 40.2 bits (92), Expect = 0.019, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 17 PRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELK 76 R TDA + S L + S DI E+V +++ AI +G K Sbjct: 28 ARGKTDATSGEPYPQEDKVILSPKGKLYVEVYR-EAMHSIDIREEKVASIRAAIESGNYK 86 Query: 77 MDTGKIADALI 87 +++ IA ++ Sbjct: 87 INSKDIAQNML 97 >UniRef50_Q74B56 FlgM family protein n=1 Tax=Geobacter sulfurreducens RepID=Q74B56_GEOSL Length = 102 Score = 40.2 bits (92), Expect = 0.020, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTST-SVTLSDAQAKLMQPGS---- 55 M ID P+ V+ V+ + A ++R +T +V LS +L++ + Sbjct: 1 MKIDTNPPVTTVNQVKGETSQAASGADARKTGAAGGQATDTVDLSRNAERLVKANATLRT 60 Query: 56 -SDINLERVEALKLAIRNGELKMDTGKIADALINEAQ 91 D+ +E+VE LK I GE + +A+ ++ + Sbjct: 61 MPDVRVEKVEELKKQIAAGEYNVSARDVAEKMLISMR 97 >UniRef50_B9ZPV8 Anti-sigma-28 factor, FlgM n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZPV8_9GAMM Length = 105 Score = 40.2 bits (92), Expect = 0.020, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Query: 18 RETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSD----INLERVEALKLAIRNG 73 ET+ A T SVTL+ A + + + RV L+ AI +G Sbjct: 25 DETSRPDAGAQGNASTPVRQDDSVTLTGAAQAMNAASGAASNAPFDEARVAELREAISSG 84 Query: 74 ELKMDTGKIADALI 87 + +D ++AD +I Sbjct: 85 QYPVDNEQLADRMI 98 >UniRef50_D2TJ79 Lateral flagellar anti-sigma factor 28 protein n=2 Tax=Citrobacter RepID=D2TJ79_CITRO Length = 95 Score = 40.2 bits (92), Expect = 0.020, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 1 MSIDRT----SPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSS 56 M I T P + A A +A T L AQ L G Sbjct: 1 MKITPTLSGNRPTPAAADAGNSSKNSAARGAVSATSLSADDITQAGLQSAQQALNDDGQG 60 Query: 57 DINLERVEALKLAIRNGELKMDTGKIADALIN 88 DI+ ++V ++ A+ GEL +DT ++A ++N Sbjct: 61 DIDYDKVAQMQAALAAGELSVDTDQLAGDMLN 92 >UniRef50_A3WGU7 Putative uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGU7_9SPHN Length = 99 Score = 39.8 bits (91), Expect = 0.024, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 4/92 (4%) Query: 2 SIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLE 61 + + + +S ++R + + S+ +S + P +D Sbjct: 8 KLQSVTAPRALSDTDIAAGRPPAGESNRTGVPSGAQGVSIEVSGSLDTQRAPVDND---- 63 Query: 62 RVEALKLAIRNGELKMDTGKIADALINEAQQD 93 RV ++ A+++G + +IADA+I Sbjct: 64 RVAQIREALKDGSYPLVPTEIADAMIAAQLSL 95 >UniRef50_A1VG68 Anti-sigma-28 factor, FlgM n=4 Tax=Desulfovibrio vulgaris RepID=A1VG68_DESVV Length = 104 Score = 39.8 bits (91), Expect = 0.025, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 5 RTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVE 64 RT K + A + S S L +A + D+ E+V+ Sbjct: 14 RTQLEKAETGKANARKGSAQPERAAPQGDRISLSVEGKLR-TEAYAAAQAAPDVRQEKVD 72 Query: 65 ALKLAIRNGELKMDTGKIADALINEAQQDLQ 95 L+ + NG +D+ K+A+ L+ E + + Sbjct: 73 TLRERVNNGSYTVDSRKVAEKLVKEEIELFR 103 >UniRef50_A1T0L6 Anti-sigma-28 factor, FlgM n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T0L6_PSYIN Length = 102 Score = 39.8 bits (91), Expect = 0.030, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M I++ + +S + + T + A A DI+ Sbjct: 6 MKINKVATAN-LSAISEENKNKVTPKKLSPSAPFNDVRVGDTATIATATKTINEIPDIDR 64 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINE 89 E+V+ ++LAI NGELK+D +A A++NE Sbjct: 65 EKVKQVQLAIANGELKIDLNSLARAIMNE 93 >UniRef50_A6VU68 Anti-sigma-28 factor, FlgM n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VU68_MARMS Length = 104 Score = 39.4 bits (90), Expect = 0.038, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Query: 18 RETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS-----SDINLERVEALKLAIRN 72 T+ A +V LS L S D+++++VE +K AI Sbjct: 24 DATSSATDKQRAIQSGGTLAEDTVKLSGTAQTLQSQQSKISNLPDVDMDKVEQIKNAIAA 83 Query: 73 GELKMDTGKIADAL 86 GE K+DT K+A+ + Sbjct: 84 GEYKIDTQKLANNM 97 >UniRef50_B5YIW9 Negative regulator of flagellin synthesis n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIW9_THEYD Length = 99 Score = 39.1 bits (89), Expect = 0.042, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 9 LKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS-SDINLERVEALK 67 + P + + P ++ S T + S + +++ + DI ++VE LK Sbjct: 11 VAPNTQIAPEKSHSKASERSEEVLTKDQVTVSEAAKNIARLMVEVSNIPDIRADKVEELK 70 Query: 68 LAIRNGELKMDTGKIADALINEA 90 AI +G ++ +IA +I EA Sbjct: 71 NAINSGTYEVKGNEIAGKIIKEA 93 >UniRef50_A9KSP6 Anti-sigma-28 factor, FlgM n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KSP6_CLOPH Length = 90 Score = 39.1 bits (89), Expect = 0.045, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M ID L ++ + T K + + + AK + DI Sbjct: 1 MRID---ALSKINQLYQTNDTRKVSKTQNGNKKDSVEISQMGKDFQIAKQAVSSAPDIRQ 57 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINE 89 E+V+ +K + +G +++ ++AD +IN+ Sbjct: 58 EKVDEIKKKLASGNYEINLEELADKMIND 86 >UniRef50_Q5DY19 Lateral flagellar anti-sigma factor 28 protein (FlgM-like) n=8 Tax=Enterobacteriaceae RepID=Q5DY19_ECOLX Length = 92 Score = 39.1 bits (89), Expect = 0.046, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 37/88 (42%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M I T P + + T + +A T L AQ L DI+ Sbjct: 1 MKITPTMPGNRPTATTAGSSQPRKTTATTTTTLSADDITQAGLQSAQQTLNDQQERDIDS 60 Query: 61 ERVEALKLAIRNGELKMDTGKIADALIN 88 ++V ++ + +G L++DT ++A +++ Sbjct: 61 DKVAQMQAMLASGSLQVDTEQLASDMLS 88 >UniRef50_C0GJK1 Anti-sigma-28 factor, FlgM n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJK1_9FIRM Length = 92 Score = 39.1 bits (89), Expect = 0.046, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSS-DIN 59 M I+ ++ + + A + + + S S + Q + ++ Sbjct: 1 MKINNNHGIQVNKLYKAQADEKAKAKSPQESAKGDKLSISGEAAKVQELVKAASVPPEVR 60 Query: 60 LERVEALKLAIRNGELKMDTGKIADALINE 89 ERVE LK AI GE +DT KIA A++++ Sbjct: 61 TERVEQLKEAIAKGEYTLDTKKIAAAMLDD 90 >UniRef50_Q0AA94 Anti-sigma-28 factor, FlgM n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AA94_ALHEH Length = 106 Score = 39.1 bits (89), Expect = 0.047, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%) Query: 7 SPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLERVEAL 66 +P A +S A + A+ +V+ + + ++N ERV+AL Sbjct: 18 TPGNAGKAGGSTRQDGAGERSSAAGERPAADQAAVSDRLQAVRQQIDATPEVNRERVDAL 77 Query: 67 KLAIRNGELKMDTGKIADALI 87 K I NGE +D +IA ++ Sbjct: 78 KERIANGEYPVDAERIASRMV 98 >UniRef50_B7GL02 Negative regulator of flagellin synthesis (Anti-sigma28 factor) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GL02_ANOFW Length = 85 Score = 39.1 bits (89), Expect = 0.051, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 7/88 (7%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 M I+R P+ V+ + + P ++ +S + L +A + L Sbjct: 1 MKINRIQPMN-VNPYERTARIEKPTKATKKTDQVEISSAAKELQEAAKFSSE------RL 53 Query: 61 ERVEALKLAIRNGELKMDTGKIADALIN 88 E+VE LK + G +D IA++++ Sbjct: 54 EKVERLKSEVEAGTYTIDARAIAESVLR 81 >UniRef50_Q0EYE3 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYE3_9PROT Length = 97 Score = 38.7 bits (88), Expect = 0.055, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Query: 1 MSIDRTSPLKPV-STVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDIN 59 M ++ + + + + D ++ ++ + + S +L + ++ S + Sbjct: 1 MRVNNSGTATGIHKSSGTGKAKDKATASTGKSRDSVQVTDSASLREKAQVMLADMSP-VR 59 Query: 60 LERVEALKLAIRNGELKMDTGKIADALINEA 90 +ER+E ++ A+ NG D+ K+A ++ A Sbjct: 60 MERIEEIRDALENGTYPQDSHKVATQIVANA 90 >UniRef50_D1B9E6 Anti-sigma-28 factor FlgM family protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9E6_THEAS Length = 92 Score = 38.7 bits (88), Expect = 0.061, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 3 IDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINLER 62 IDR + + ++ + + + + LSDA ++ + D+ ++ Sbjct: 2 IDRIDRIYGGNPMERKGRGGRVRPSGGGGDQLEVSPFARELSDALKEMQKL--PDVRSDK 59 Query: 63 VEALKLAIRNGELKMDTGKIADALINE 89 VE ++ I G + D +A+ L+ Sbjct: 60 VEEIRSRIEAGTYRPDLDLVAERLVRA 86 >UniRef50_B8CKV3 Anti-sigma-28 factor, FlgM n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CKV3_SHEPW Length = 112 Score = 38.7 bits (88), Expect = 0.064, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Query: 40 SVTLSDAQAKLMQPGS-----SDINLERVEALKLAIRNGELKMDTGKIA 83 SV+++ +L + DI+ ++V+ +K AI G K+D K+A Sbjct: 50 SVSITPQAQQLQNVQTKMADMPDIDQKKVDEIKAAIAEGRYKIDPDKLA 98 >UniRef50_B4RV42 Negative regulator of flagellin synthesis FlgM n=4 Tax=Alteromonadales RepID=B4RV42_ALTMD Length = 109 Score = 38.3 bits (87), Expect = 0.069, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 12/109 (11%) Query: 1 MSIDRTSPLKPVSTVQPR--------ETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQ 52 M+I+ + P + V + + A A SV+L+ + +L Q Sbjct: 1 MAINNINNGLPKTPVDNGKVAQQNQTQQSQQQAAAQSAQTAPAPRQDSVSLTQSAQQLNQ 60 Query: 53 ----PGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN 97 + +N ++V+ LK AI++GE K++ +A+ + + + Sbjct: 61 VQKKGTEAPVNQDKVDRLKKAIQSGEYKVNPEVLANKIAKLEGEIFGTK 109 >UniRef50_B1K3C2 Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1K3C2_BURCC Length = 95 Score = 38.3 bits (87), Expect = 0.075, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTT-ASTSTSVTLSDAQAKLMQPGSSDIN 59 M I + V+ + + ++ A T A T L A+ + +I+ Sbjct: 1 MRIANLAAHAAVNGAEGVQRSEGARHKRTVASTEVAHEKTRDRLVLDAARAALDETPEID 60 Query: 60 LERVEALKLAIRNGELKMDTGKIADAL 86 + RV ++ A+ G+++ D K+A + Sbjct: 61 MARVTRIQAALATGKIRFDACKLAGTI 87 >UniRef50_Q31FK3 Anti-sigma-28 factor, FlgM n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FK3_THICR Length = 101 Score = 38.3 bits (87), Expect = 0.076, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 5/94 (5%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKL----MQPGSS 56 M I + + + + T ++ VTL+D +++ Q +S Sbjct: 1 MDIKNINQNLVNNRLNDSANNSPKGNATSTPSGTPKSTDKVTLTDVSSQVSNLEKQAAAS 60 Query: 57 DIN-LERVEALKLAIRNGELKMDTGKIADALINE 89 +I+ R+E L+ AI++G ++D K+A+ LI Sbjct: 61 NIDNSARIEELREAIKDGTYQVDAEKVANKLIQT 94 >UniRef50_D2C774 Anti-sigma-28 factor, FlgM n=5 Tax=Thermotogaceae RepID=D2C774_THENR Length = 92 Score = 38.3 bits (87), Expect = 0.076, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 3 IDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS-SDINLE 61 IDR + ++ ++ + + + K + + D + + + S + + Sbjct: 2 IDRINGPGDINPIEGIKKPSVEKSKEKRKKESTDNVELRHVEDVRKFAEEAKNISTVREQ 61 Query: 62 RVEALKLAIRNGELKMDTGKIADALINEAQQ 92 VE LK AI +G +DT ++A ++ E + Sbjct: 62 LVEELKKAIESGNYFVDTERLARKILEELSE 92 >UniRef50_B2TLR2 Negative regulator of flagellin synthesis FlgM n=6 Tax=Clostridium RepID=B2TLR2_CLOBB Length = 92 Score = 38.3 bits (87), Expect = 0.085, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 3/92 (3%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGSSDINL 60 MSI+R + V+ + + ++ +++ S L N Sbjct: 1 MSINRINAHSAVNIYNSNKNINKIEKLNKVETRDRIEISTLGKSIKDYSLESSID---NT 57 Query: 61 ERVEALKLAIRNGELKMDTGKIADALINEAQQ 92 ++V +K I+NG K+D+ A +++ ++ Sbjct: 58 KKVAEIKEKIQNGTYKIDSKLTAKSILEAIKE 89 >UniRef50_A4ISV5 Anti-sigma factor repressor of sigma-D-dependent transcription n=6 Tax=Geobacillus RepID=A4ISV5_GEOTN Length = 88 Score = 37.9 bits (86), Expect = 0.093, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 8/89 (8%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPGS-SDIN 59 M I P+ +T + ++ V +S +L + S Sbjct: 1 MKIHHIGPM-------NVNPYQRQLTKTERLAARKASGDQVEISKEAKELQEAASWEQAR 53 Query: 60 LERVEALKLAIRNGELKMDTGKIADALIN 88 +++ L+ I NG +D +A +I+ Sbjct: 54 QAKLDELRQQIENGTYTVDPKAVAKRMID 82 >UniRef50_C5RFS4 Anti-sigma-28 factor, FlgM n=1 Tax=Clostridium cellulovorans 743B RepID=C5RFS4_CLOCL Length = 91 Score = 37.9 bits (86), Expect = 0.097, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 10/94 (10%) Query: 1 MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLSDAQAKLMQPG---SSD 57 M IDR ++++ + + T S LS+ + S Sbjct: 1 MKIDR------ITSIDNKN-IYEKYRIASKNNTEKIKQDSFQLSNEAKNFLSISKEISEG 53 Query: 58 INLERVEALKLAIRNGELKMDTGKIADALINEAQ 91 I ++V +K AI +G K++ +A+++ N + Sbjct: 54 IVSDKVRTIKKAINDGTYKINNESLAESIFNTMK 87 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.293 0.119 0.273 Lambda K H 0.267 0.0373 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 314,507,524 Number of Sequences: 3077464 Number of extensions: 7091900 Number of successful extensions: 41070 Number of sequences better than 1.0e-01: 172 Number of HSP's better than 0.1 without gapping: 203 Number of HSP's successfully gapped in prelim test: 101 Number of HSP's that attempted gapping in prelim test: 40836 Number of HSP's gapped (non-prelim): 304 length of query: 97 length of database: 1,040,396,356 effective HSP length: 66 effective length of query: 31 effective length of database: 837,283,732 effective search space: 25955795692 effective search space used: 25955795692 T: 11 A: 40 X1: 16 ( 6.8 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.2 bits) S2: 87 (38.3 bits)