BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (162 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q8XBW0 Hydrogenase-2 operon protein hybE n=100 Tax=Ente... 334 8e-91 UniRef50_D1P1M6 Hydrogenase-2 operon protein HybE n=2 Tax=Provid... 212 4e-54 UniRef50_A0KL83 Hydrogenase-2 operon protein HybE n=2 Tax=Gammap... 158 7e-38 UniRef50_A4SLU9 Member of hyb operon n=1 Tax=Aeromonas salmonici... 155 4e-37 UniRef50_C6C9A6 Hydrogenase 2-specific chaperone n=6 Tax=Enterob... 152 3e-36 UniRef50_D2BS21 Hydrogenase 2-specific chaperone n=4 Tax=Enterob... 147 1e-34 UniRef50_B3GYB5 Hydrogenase-2 operon protein HybE n=5 Tax=Pasteu... 146 2e-34 UniRef50_Q65PZ4 Putative uncharacterized protein n=1 Tax=Mannhei... 140 1e-32 UniRef50_A1JQK2 Hydrogenase-2 operon protein n=8 Tax=Enterobacte... 135 3e-31 UniRef50_A6VNU5 Putative uncharacterized protein n=1 Tax=Actinob... 133 2e-30 UniRef50_Q478N6 Putative uncharacterized protein n=1 Tax=Dechlor... 84 1e-15 UniRef50_Q478M3 HupJ protein n=1 Tax=Dechloromonas aromatica RCB... 75 7e-13 UniRef50_Q21R11 Putative uncharacterized protein n=1 Tax=Rhodofe... 75 9e-13 UniRef50_B2JX94 Rubredoxin-type Fe(Cys)4 protein n=1 Tax=Burkhol... 64 2e-09 UniRef50_A1KC57 Probable Hydrogenase expression/formation protei... 62 6e-09 UniRef50_Q0A724 HupJ, contains rubredoxin domain n=1 Tax=Alkalil... 62 7e-09 UniRef50_B2IJ36 Rubredoxin n=1 Tax=Beijerinckia indica subsp. in... 62 8e-09 UniRef50_A4YNU3 Hydrogenase expression/formation protein hupJ n=... 59 4e-08 UniRef50_B3QGV5 HupJ protein n=6 Tax=Rhodopseudomonas palustris ... 59 4e-08 UniRef50_P28152 Hydrogenase expression/formation protein hupJ n=... 57 3e-07 UniRef50_P48341 Hydrogenase expression/formation protein hupJ n=... 56 3e-07 UniRef50_Q6LB97 HupJ n=1 Tax=Oligotropha carboxidovorans OM5 Rep... 56 4e-07 UniRef50_Q2BN46 HupJ, contains rubredoxin domain n=1 Tax=Neptuni... 55 9e-07 UniRef50_D2LGL4 Rubredoxin n=1 Tax=Rhodomicrobium vannielii ATCC... 55 1e-06 UniRef50_C7RPY8 Putative uncharacterized protein n=1 Tax=Candida... 50 3e-05 UniRef50_A0LAK5 Putative uncharacterized protein n=1 Tax=Magneto... 49 7e-05 UniRef50_P30781 Hydrogenase expression/formation protein hoxT n=... 49 8e-05 UniRef50_C7I140 Putative uncharacterized protein n=1 Tax=Thiomon... 48 9e-05 UniRef50_Q03009 Probable rubredoxin hupJ n=8 Tax=Alphaproteobact... 47 2e-04 UniRef50_A0P1N2 Putative uncharacterized protein n=1 Tax=Labrenz... 47 3e-04 UniRef50_A1VNP7 HupJ, contains rubredoxin domain n=1 Tax=Polarom... 44 0.002 UniRef50_Q2W3V9 Hydrogenase expression/formation protein hupT n=... 40 0.023 >UniRef50_Q8XBW0 Hydrogenase-2 operon protein hybE n=100 Tax=Enterobacteriaceae RepID=HYBE_ECO57 Length = 162 Score = 334 bits (856), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 161/162 (99%), Positives = 161/162 (99%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 MTEEIAGFQTSPKAQVQAAFEEIARRSMH LSFLHPSMPVYVSDFTLFEGQWTGCVITPW Sbjct: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHALSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI Sbjct: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 Query: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA Sbjct: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 >UniRef50_D1P1M6 Hydrogenase-2 operon protein HybE n=2 Tax=Providencia RepID=D1P1M6_9ENTR Length = 166 Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 95/161 (59%), Positives = 122/161 (75%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M +I G+ +P+ VQAAFE ++ +SMHDLSFLHP+M +Y S F++FE QW G VITPW Sbjct: 6 MPSDIQGYSNNPQPLVQAAFERVSEQSMHDLSFLHPTMGIYASPFSVFENQWVGVVITPW 65 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 MLSA+I PGPDQ W R V EK+GL LPYG MT+TVGEL+G++QYL+CSLMSPL ++ Sbjct: 66 MLSAIILPGPDQYWEHRTVGEKLGLILPYGEMTYTVGELEGLTQYLACSLMSPLDRKLTA 125 Query: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGEN 161 E+G L DDCARM+LSLPVT+P+VP + R +F R G+ Sbjct: 126 EQGVHLADDCARMLLSLPVTDPNVPKSPERRAVFARYLGDK 166 >UniRef50_A0KL83 Hydrogenase-2 operon protein HybE n=2 Tax=Gammaproteobacteria RepID=A0KL83_AERHH Length = 182 Score = 158 bits (399), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 2/158 (1%) Query: 2 TEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWM 61 +E +GF T+P + A +E IA++ M L F HP+MP+ V++ TLFEGQW GCV+TPWM Sbjct: 18 AQEFSGFATNPAPLLVAQYERIAQQEMQALPFYHPAMPI-VAECTLFEGQWLGCVLTPWM 76 Query: 62 LSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIE 121 LS V+ PGPDQLWP+R S+++ LQLP G +TF VG L Q L+CSLMSP+ + + Sbjct: 77 LSVVVLPGPDQLWPVRGSSDRLALQLPCGNLTFMVGALPETGQLLACSLMSPIDPHLGAD 136 Query: 122 EGQRLTDDCARMILSLPVTNPDVP-HAGRRALLFGRRS 158 EG+ L +M+LSLPV + + RR L GRR+ Sbjct: 137 EGRALVSSTLKMLLSLPVQQGEGGVNLSRRRLFSGRRT 174 >UniRef50_A4SLU9 Member of hyb operon n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SLU9_AERS4 Length = 160 Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 79/160 (49%), Positives = 101/160 (63%), Gaps = 1/160 (0%) Query: 3 EEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWML 62 +E AGF T+P + A +E IAR M L F H +MP+ V++ LFE QW GCV+TPWML Sbjct: 2 QEFAGFATNPAPLLVAQYERIAREEMQGLPFYHATMPI-VAECVLFEEQWLGCVLTPWML 60 Query: 63 SAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEE 122 S V+ PGPDQLWP+R+ S+++ LQLP G MTF VGEL Q L+CSLMSPL + E+ Sbjct: 61 SLVVLPGPDQLWPVRRSSDRLALQLPCGNMTFMVGELPETGQLLACSLMSPLDPHLGAEQ 120 Query: 123 GQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 G L +M+ SLP+ V R LFG R G+ A Sbjct: 121 GSSLVSSTLKMLHSLPLHQGAVGVDLGRRRLFGARRGQPA 160 >UniRef50_C6C9A6 Hydrogenase 2-specific chaperone n=6 Tax=Enterobacteriaceae RepID=C6C9A6_DICDC Length = 186 Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/153 (49%), Positives = 92/153 (60%) Query: 4 EIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLS 63 + G SP A ++A F IAR M L F +PV FTLFE QW GC++TPWM+S Sbjct: 30 RVMGHDQSPVAWLEAEFSRIARERMQSLPFYRAGIPVQACGFTLFEQQWFGCLLTPWMMS 89 Query: 64 AVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEG 123 V+ PGP Q WP R VS+K+ L LP G + F VG D SQYL+CSLMSPL ++ E+ Sbjct: 90 LVVLPGPQQQWPRRTVSDKLALSLPCGDVGFIVGATDDGSQYLTCSLMSPLDTALDAEQA 149 Query: 124 QRLTDDCARMILSLPVTNPDVPHAGRRALLFGR 156 RL + ARM LSLPV + P R LFGR Sbjct: 150 VRLAEQSARMALSLPVADAAAPQNPGRRALFGR 182 >UniRef50_D2BS21 Hydrogenase 2-specific chaperone n=4 Tax=Enterobacteriaceae RepID=D2BS21_DICD5 Length = 187 Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/159 (47%), Positives = 97/159 (61%), Gaps = 1/159 (0%) Query: 5 IAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSA 64 IAG SP A ++A F IA+ M L F +PV FTLFE QW GC++TPWMLS Sbjct: 29 IAGHDQSPVAWLEAEFNRIAQERMRLLPFYRDGIPVRACGFTLFEQQWFGCLLTPWMLSL 88 Query: 65 VIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQ 124 ++ PGP Q WP R++S ++ L LP G+M F V E D QYLSCSLMSPL ++ ++ Sbjct: 89 LVLPGPGQQWPRRELSTRLALALPCGSMKFVVSESDDGQQYLSCSLMSPLDSALGADQAL 148 Query: 125 RLTDDCARMILSLPVTNPDVP-HAGRRALLFGRRSGENA 162 +L ARM LSLPV + D P + RRAL RS +A Sbjct: 149 QLAQQSARMALSLPVQDADAPENLSRRALFSRYRSQRHA 187 >UniRef50_B3GYB5 Hydrogenase-2 operon protein HybE n=5 Tax=Pasteurellaceae RepID=B3GYB5_ACTP7 Length = 177 Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 68/150 (45%), Positives = 96/150 (64%), Gaps = 2/150 (1%) Query: 4 EIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLS 63 E+ GF +P + E+I+ +M DL F +P + +F L+EGQW G V+TPWM+S Sbjct: 25 EVMGFNDNPGVLFRKEMEKISA-NMQDLPFYRYDIPCFAPNFILYEGQWIGSVLTPWMIS 83 Query: 64 AVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEG 123 VI PGP+QLW R V +K+ LQLPY MTFTV +D + QYLSCSL+SP+ +++ E+ Sbjct: 84 IVIIPGPEQLWEGRTVGDKLSLQLPYKAMTFTVSSIDSIPQYLSCSLLSPIDPNLTAEQA 143 Query: 124 QRLTDDCARMILSLPVTNPDVPHAGRRALL 153 +LT DC M+LSLP+ VP +R + Sbjct: 144 VQLTKDCLTMLLSLPIKQ-QVPDISKRNIF 172 >UniRef50_Q65PZ4 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65PZ4_MANSM Length = 170 Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/155 (44%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 + E I GF+ +P Q E++A +M DL F +P + F FE QW G +TPW Sbjct: 14 LLELIDGFEQNPAELFQTEMEKVAE-NMKDLPFYREDIPCFCPKFVQFENQWIGMALTPW 72 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 MLS ++ PGP+Q W R V +KI L PY T+ FTV LD V QYLSCSL SPL ++S Sbjct: 73 MLSVLVLPGPNQQWKARTVGDKIALAFPYKTLNFTVSSLDNVPQYLSCSLHSPLEANLSK 132 Query: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFG 155 E +LT DC M+LSLP+ P R +FG Sbjct: 133 EHAVQLTKDCLTMLLSLPIKQ-KAPSDLNRRNMFG 166 >UniRef50_A1JQK2 Hydrogenase-2 operon protein n=8 Tax=Enterobacteriaceae RepID=A1JQK2_YERE8 Length = 172 Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 72/165 (43%), Positives = 95/165 (57%), Gaps = 7/165 (4%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M + IAG + +P A ++ F ++A M L F +P+ F LFE QW G ++TPW Sbjct: 1 MFDVIAGHEQNPAALLEQVFGQVAADEMRGLPFYRDHIPLRACGFQLFEQQWIGALLTPW 60 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELD-------GVSQYLSCSLMSP 113 MLS V+ PGP Q W R V E++ L LP G+++F V E+D G QYLS SLMSP Sbjct: 61 MLSLVVLPGPQQSWQRRAVGERLMLALPCGSISFIVSEIDFTVSEIAGCGQYLSRSLMSP 120 Query: 114 LSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRS 158 L S+S E +L + ARM LSLPV + D P RR LF + S Sbjct: 121 LDTSLSAERALQLAEQSARMALSLPVMDADAPANPRRRALFNKVS 165 >UniRef50_A6VNU5 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNU5_ACTSZ Length = 168 Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 2/149 (1%) Query: 5 IAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSA 64 + GF +P +Q E R +M L F ++P Y F L + QW G V+TPWMLS Sbjct: 17 VVGFSENPALLLQTEMER-TRPNMRSLPFFRENIPCYCPPFILLDNQWIGTVLTPWMLSL 75 Query: 65 VIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQ 124 VI PGP+Q W R + +K+G+ LPY T+ FTV +L+G+ YLS SL SPL+ ++ E+G Sbjct: 76 VILPGPNQEWETRPLGDKLGVALPYKTLMFTVSQLEGIPCYLSHSLASPLARKLTAEQGV 135 Query: 125 RLTDDCARMILSLPVTNPDVPHAGRRALL 153 +L DDC +M LS P+ P P RR + Sbjct: 136 QLADDCLKMALSFPLNQPQ-PDLKRRNIF 163 >UniRef50_Q478N6 Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica RCB RepID=Q478N6_DECAR Length = 183 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 2/150 (1%) Query: 11 SPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGP 70 P A ++A + + + MHD+ F++ ++ V F +EG W G VITPW L+ V+ G Sbjct: 24 DPTAFLEAHYRHVWQTRMHDMPFVNAALGVEAVGFARYEGDWLGVVITPWFLNLVLVYGG 83 Query: 71 DQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDC 130 QLW E+ L LP GTM F + + Y C L++P+++ + + + + D Sbjct: 84 GQLWGDIPAGERRYLNLPCGTMQFLADDDPDIGPYQYCPLIAPVTNLADMAQARVVAADA 143 Query: 131 ARMILSLPVTN--PDVPHAGRRALLFGRRS 158 + + LP PD+P RR Sbjct: 144 LKTVFGLPAAEPAPDLPPVAEGKPAVSRRG 173 >UniRef50_Q478M3 HupJ protein n=1 Tax=Dechloromonas aromatica RCB RepID=Q478M3_DECAR Length = 156 Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 67/154 (43%), Gaps = 6/154 (3%) Query: 8 FQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFT-LFEGQWTGCVITPWMLSAVI 66 + T P ++ A F+ IAR MHD+ + + V F +G W G +ITPW L+ + Sbjct: 4 WTTDPSPELVAVFDNIARTRMHDVPICNGKLQVEAVGFQRTADGHWAGAMITPWALNLLR 63 Query: 67 FPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRL 126 P WP+ K P G FTV E + Y CSL SP + E RL Sbjct: 64 LPAQVDGWPVLAACSKHDWHFPSGNYEFTVAEEASIGNYHLCSLFSP-ALEFESHEAARL 122 Query: 127 TDDCA-RMILSLPVTNPDVPH--AGRRALL-FGR 156 T A + P+ PD A RRA L GR Sbjct: 123 TALAAVHALFGEPLVAPDAAAKPASRRAFLGLGR 156 >UniRef50_Q21R11 Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21R11_RHOFD Length = 165 Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 4/138 (2%) Query: 10 TSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPG 69 SP V+AAF I + M D+ L+P++ V DF ++G W G V+TPW +S ++ PG Sbjct: 8 VSPADAVEAAFSRIQQECMVDVPILNPALSVEAIDFQRWQGHWLGMVVTPWCMSLLLLPG 67 Query: 70 PDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDD 129 W +++ ++ P G F G + +Y SCSL SP+ S E Sbjct: 68 SIDNWVSTGENKRRFVRFPAGDFAFLGGHETELGEYQSCSLFSPMGKFSSQSEATM---- 123 Query: 130 CARMILSLPVTNPDVPHA 147 AR L +T P P A Sbjct: 124 TARASLVGLLTVPQPPQA 141 >UniRef50_B2JX94 Rubredoxin-type Fe(Cys)4 protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JX94_BURP8 Length = 226 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 54/113 (47%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M + F +++ FE+IA+ M DL FL+ + V F ++ W G ++TPW Sbjct: 57 MAPTASSFSADLTHRIEGTFEQIAQTRMCDLPFLNSRLRVAAVAFRPWQSSWIGVLVTPW 116 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSP 113 ++ + P D +P + + LP G M F LD + ++ CSL SP Sbjct: 117 GINLLQLPKSDAPFPPTRADAVTEVALPGGIMPFMPARLDTLGEFRMCSLFSP 169 >UniRef50_A1KC57 Probable Hydrogenase expression/formation protein n=1 Tax=Azoarcus sp. BH72 RepID=A1KC57_AZOSB Length = 188 Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 48/95 (50%) Query: 20 FEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKV 79 F+ IAR M L +P++ V V F+G+W G ++TPW +S V+ PG + V Sbjct: 29 FQHIARTRMAGLPICNPALGVAVPALLPFQGEWLGALVTPWAISLVLLPGEGTRFRAIGV 88 Query: 80 SEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPL 114 + P G +F + G+ Y +CSL SP+ Sbjct: 89 GDSQDWDFPSGRYSFLGHQEAGLGAYQTCSLASPV 123 >UniRef50_Q0A724 HupJ, contains rubredoxin domain n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A724_ALHEH Length = 153 Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 11/148 (7%) Query: 16 VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWP 75 ++AAF + M +++ +P++ V F ++G+ G +++PW L+ ++ PG + W Sbjct: 14 LEAAFHRVQAEQMAEIALANPALTVEAVGFHRYQGRPFGALLSPWFLNLILMPGEGEDWE 73 Query: 76 LRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTD-DCARMI 134 + LP G F V G+ + +CS+MSP+ +R+ D D RM+ Sbjct: 74 QLPERSEQHWALPAGVYLFHVCRAAGIGTFQACSIMSPV---------ERVEDQDSFRMV 124 Query: 135 LSLPVTNPDVPHA-GRRALLFGRRSGEN 161 + P RRA+L GR E Sbjct: 125 AEAALRAVCRPSGHSRRAVLTGRFDDEG 152 >UniRef50_B2IJ36 Rubredoxin n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJ36_BEII9 Length = 295 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 35/184 (19%) Query: 14 AQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQL 73 A+++A F EI M L FL+ ++ + F EGQ G +ITPW ++ V+ PGP + Sbjct: 108 ARMEALFREIHAGQMRGLPFLNDALGIKAVGFRAHEGQMLGVLITPWFMNLVLAPGPHED 167 Query: 74 WPLRKVSEKIGLQLPYGTMTFTVGELDG--------------------VSQYLSCSLMSP 113 W + K + P G FT G ++ Y +CSL SP Sbjct: 168 WSVLTSGGKELIAFPSGVYEFTFVNRQGPSGKGSSGNGQTGNSKAGLELTPYKACSLFSP 227 Query: 114 LSH----SMSIEEGQRLTDDCARMILSLPVTNPDVPH-----------AGRRALLFGRRS 158 +S +IE + + L P P RR+LLFG R+ Sbjct: 228 MSDFTTMPQAIETAEAVLTALFDASLCPPRKEASEPEPVAKEEKEPFRPDRRSLLFGPRA 287 Query: 159 GENA 162 G++ Sbjct: 288 GDHG 291 >UniRef50_A4YNU3 Hydrogenase expression/formation protein hupJ n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YNU3_BRASO Length = 165 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 9 QTSPKA---QVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAV 65 Q +P A ++ + EI R+M +L H ++ V FT G+ G ++TPW ++ V Sbjct: 12 QLTPAAWGERLAGIYREIGDRAMRELPIYHDALAVDAIGFTSVVGRTIGILVTPWFMNVV 71 Query: 66 IFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSH 116 D V I + LP G+ F + ++ GV + SCSL SP+S Sbjct: 72 TPAEGD-------VGSTIDVALPAGSFGFAISDVAGVGRIASCSLFSPMSE 115 >UniRef50_B3QGV5 HupJ protein n=6 Tax=Rhodopseudomonas palustris RepID=B3QGV5_RHOPT Length = 174 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 28 MHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQL 87 M DL +P++ V F + G ++TPW ++ V P D R E + L Sbjct: 31 MRDLPVFNPALDVAAIGFRALDDHAFGVIVTPWFMNLVRLP-LDPATAGRSQGEVVTRVL 89 Query: 88 PYGTMTFTVGELDGVSQYLSCSLMSPL 114 P G + FT+G+LDG+ + SCSL SP+ Sbjct: 90 PVGALEFTIGQLDGIGRIESCSLFSPM 116 >UniRef50_P28152 Hydrogenase expression/formation protein hupJ n=1 Tax=Rhizobium leguminosarum bv. viciae RepID=HUPJ_RHILV Length = 174 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%) Query: 15 QVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLW 74 Q++ + EI +M D+ +P++ V + F + G+ G V TPW ++ V PD + Sbjct: 20 QLEMRYREIYATAMADVPICNPALGVAATGFRTYGGRALGIVTTPWFMNLVAADLPDGV- 78 Query: 75 PLRKVSEKIGLQ--LPYGTMTFTVGELDGVSQYLSCSLMSPL 114 P + L+ LP G + F G+LD + + SCSL SP+ Sbjct: 79 PTGPAATGTTLRVNLPAGEVEFIAGQLDAIGRIDSCSLFSPV 120 >UniRef50_P48341 Hydrogenase expression/formation protein hupJ n=3 Tax=Bradyrhizobium RepID=HUPJ_BRAJA Length = 169 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%) Query: 16 VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWP 75 + ++ EI R+M DL + ++ V F F G G ++TPW ++ V+ P Sbjct: 19 LAGSYREIGERAMRDLPIYNDALGVEAVGFRAFNGTIVGIMVTPWFMN-VVLPASAVAQA 77 Query: 76 LRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPL 114 + +I + P G + FT+ E+ + + SCSL SP+ Sbjct: 78 TSGATARI--RFPAGDIEFTISEVGQIGRIASCSLFSPM 114 >UniRef50_Q6LB97 HupJ n=1 Tax=Oligotropha carboxidovorans OM5 RepID=Q6LB97_OLICO Length = 195 Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 4/122 (3%) Query: 15 QVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLW 74 Q+ +F ++ M D F + S+ V F ++E + G ++ PW ++ V+ P D+ W Sbjct: 6 QLTESFRQVFNTKMRDTPFSNNSLNVEAIGFRIWENRIVGILMMPWCMNIVVLPATDEDW 65 Query: 75 PLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMI 134 ++ K P G F Y +CSL S ++ S Q D AR Sbjct: 66 SQLRIGTKRNFAFPSGCYEFIFNNRPPAGGYFACSLFSSMAEFAS----QLQATDVARAA 121 Query: 135 LS 136 ++ Sbjct: 122 IA 123 >UniRef50_Q2BN46 HupJ, contains rubredoxin domain n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN46_9GAMM Length = 184 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Query: 24 ARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFP-GPDQLWPLRKVSEK 82 A M DL + ++ + + E + +ITPW ++ ++ P D+ L S+K Sbjct: 16 ADSRMQDLPVYNKALNIELVGAKALETGFVAVLITPWCMNLILMPEQADKTERLAAGSKK 75 Query: 83 IGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSH 116 + + P G F ELDGVS +LSCSL SP+S Sbjct: 76 L-IGFPSGQYEFIQNELDGVSGFLSCSLFSPMSQ 108 >UniRef50_D2LGL4 Rubredoxin n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL4_RHOVA Length = 177 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 10/165 (6%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M+E A + +++A FE I M D+ L+P + V G W ++TPW Sbjct: 1 MSEAQADEAAAVARRLEAVFERIHATRMADVPLLNPRLAVAAVGPRDVGGLWLAVLVTPW 60 Query: 61 MLSAVIFPGPDQ---LWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHS 117 ++A++ P + W KI LP G F G G+ Y CSL SP++ Sbjct: 61 FINAMLLPKTAEDVESWGEAPSGAKISHALPAGMFEFIAGGEAGLGPYRMCSLFSPVTQ- 119 Query: 118 MSIEEGQRLTDDCARMILSLPVTNPDV------PHAGRRALLFGR 156 + + + A L +PD P RR L+FGR Sbjct: 120 FEDQNAALIAAEAALAALLDSGHHPDAEAARRKPQLSRRGLIFGR 164 >UniRef50_C7RPY8 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RPY8_9PROT Length = 210 Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 32/133 (24%) Query: 12 PKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFE---------------------- 49 P ++ ++ I SM DL F++P++ V F ++ Sbjct: 25 PTPLLETMYQRIWATSMRDLPFINPALSVEAVGFRRWQSLTASPLAEDNSPQPSGDPAGR 84 Query: 50 ------GQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVS 103 G W G ++TPW ++ + PG LW R + ++ P G + F + + DG + Sbjct: 85 SRPSAQGDWVGALVTPWFINLFVLPGGGNLWSDRPAGARCHIEFPIGPLEF-IADHDGSA 143 Query: 104 Q---YLSCSLMSP 113 + Y C L +P Sbjct: 144 EIPAYQYCPLFAP 156 >UniRef50_A0LAK5 Putative uncharacterized protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAK5_MAGSM Length = 215 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 46/102 (45%) Query: 15 QVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLW 74 Q++ F I + M + L+P + V F ++ W G VITPW+++ V P Sbjct: 9 QLETTFTAIHKNQMQGIPLLNPMIRVEAVGFQRWQVGWLGVVITPWLMNLVYIPDDASAL 68 Query: 75 PLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSH 116 + +K + P + T V + GV + S S+ SP+ Sbjct: 69 EAAPLGDKQVHRFPERSYTMLVNDFAGVGRCWSFSIHSPMGE 110 >UniRef50_P30781 Hydrogenase expression/formation protein hoxT n=3 Tax=Azotobacter RepID=HOXT_AZOVI Length = 153 Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 6/139 (4%) Query: 19 AFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWT-GCVITPWMLSAVIFPGPDQLWPLR 77 A +A M L +P++ V + + EG G +ITPW ++ P D P Sbjct: 9 AHYRVAGARMAGLPVYNPALTVELLGWRAVEGVGALGVLITPWCMNLFWQPPADAELP-- 66 Query: 78 KVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSL 137 E+ L LP G T+ E + + ++ S SL SP+ E + + + R+IL++ Sbjct: 67 ASGERAVLSLPSGDYECTLHEDERLGRHASASLCSPMQDFPGQAEARAMAGEVLRLILAV 126 Query: 138 PVTNPDVPHAG---RRALL 153 P P+ +G RRAL Sbjct: 127 PEAGPEPSRSGLLSRRALF 145 >UniRef50_C7I140 Putative uncharacterized protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I140_THIIN Length = 168 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 3/109 (2%) Query: 16 VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLS--AVIFPGPDQL 73 ++ A+ EI M L ++P++ V V ++G G ++TPW ++ A+ PG L Sbjct: 15 LEQAYSEIQHTRMRGLPIVNPALQVAVVGLRAWDGLCIGVLVTPWCMNLLALSLPGGRTL 74 Query: 74 WPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEE 122 P + + L LP G + V YLS SL SP+ S E Sbjct: 75 LPATAGTIRT-LDLPAGRYDLLAAHMPQVGHYLSGSLYSPMDAFTSQHE 122 >UniRef50_Q03009 Probable rubredoxin hupJ n=8 Tax=Alphaproteobacteria RepID=HUPJ_RHOCA Length = 278 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 9 QTSPKAQVQA---AFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAV 65 Q AQV A F EI M D+ ++ ++ + F EG+ G +++PW ++ + Sbjct: 85 QNRVDAQVSALVADFREIWHSKMRDVPLVNKALSIEAVGFRSHEGRGLGVLVSPWFMNLI 144 Query: 66 IFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSL 110 P + W K L+ P G F + V Y +CSL Sbjct: 145 QLPAAGEDWSGLIPGVKEDLEFPSGLYEFIHNRREMVGGYKACSL 189 >UniRef50_A0P1N2 Putative uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1N2_9RHOB Length = 196 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 3/106 (2%) Query: 10 TSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAV-IFP 68 T+ +++ F ++ M + L+ + V + G W G +ITPW ++ V I Sbjct: 5 TAITDRLETCFRQVHAERMSGIPILNEKLGVRAVGIVPWNGFWFGALITPWFMNLVLIAQ 64 Query: 69 GPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPL 114 PDQ + + EK P G F G D + + CSL SP+ Sbjct: 65 EPDQ--NIIRSGEKRLFVFPAGRFEFIRGHEDHLGAFWMCSLFSPV 108 >UniRef50_A1VNP7 HupJ, contains rubredoxin domain n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VNP7_POLNA Length = 180 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 15/159 (9%) Query: 16 VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLF-------EGQWTGCVITPWMLSAVIFP 68 + A ++ IA M + L+P++ V F L E G +ITPW ++ V P Sbjct: 16 LAALYQHIASTRMQGIPLLNPAVQVEAVGFELVKPEGNEPETTGIGVLITPWFMNLVWLP 75 Query: 69 GPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPL----SHSMSIEEGQ 124 +L ++V K+ + F DG Y +CSL SP+ +H ++ Q Sbjct: 76 -LRRLDLAKQVGSKVPRYVGRECFEFIAAHEDGFGSYEACSLFSPVFEFENHQAAVATAQ 134 Query: 125 RLTDDCAR-MILSLPVTNPDVPHAGRRALLFGRRSGENA 162 + D + + P P RRA LFGR S A Sbjct: 135 AVLDTLRQPASAAAQAVLPQAP--ARRAFLFGRSSAVAA 171 >UniRef50_Q2W3V9 Hydrogenase expression/formation protein hupT n=3 Tax=Magnetospirillum RepID=Q2W3V9_MAGSA Length = 157 Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 15 QVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPD 71 ++ + F I M DL +P++ V F ++G G ++TPW ++ ++ PG D Sbjct: 15 ELVSVFARIGEERMKDLGLYNPALQVEAVGFRQWQGWLAGILVTPWFMNFMLLPGSD 71 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8XBW0 Hydrogenase-2 operon protein hybE n=100 Tax=Ente... 233 1e-60 UniRef50_D1P1M6 Hydrogenase-2 operon protein HybE n=2 Tax=Provid... 214 9e-55 UniRef50_C6C9A6 Hydrogenase 2-specific chaperone n=6 Tax=Enterob... 204 7e-52 UniRef50_D2BS21 Hydrogenase 2-specific chaperone n=4 Tax=Enterob... 201 6e-51 UniRef50_A1JQK2 Hydrogenase-2 operon protein n=8 Tax=Enterobacte... 197 1e-49 UniRef50_Q65PZ4 Putative uncharacterized protein n=1 Tax=Mannhei... 194 8e-49 UniRef50_B3GYB5 Hydrogenase-2 operon protein HybE n=5 Tax=Pasteu... 192 3e-48 UniRef50_A0KL83 Hydrogenase-2 operon protein HybE n=2 Tax=Gammap... 190 2e-47 UniRef50_A4SLU9 Member of hyb operon n=1 Tax=Aeromonas salmonici... 189 3e-47 UniRef50_A6VNU5 Putative uncharacterized protein n=1 Tax=Actinob... 180 2e-44 UniRef50_Q478N6 Putative uncharacterized protein n=1 Tax=Dechlor... 175 4e-43 UniRef50_Q21R11 Putative uncharacterized protein n=1 Tax=Rhodofe... 166 2e-40 UniRef50_B2IJ36 Rubredoxin n=1 Tax=Beijerinckia indica subsp. in... 164 1e-39 UniRef50_Q478M3 HupJ protein n=1 Tax=Dechloromonas aromatica RCB... 164 1e-39 UniRef50_Q6LB97 HupJ n=1 Tax=Oligotropha carboxidovorans OM5 Rep... 153 2e-36 UniRef50_Q0A724 HupJ, contains rubredoxin domain n=1 Tax=Alkalil... 153 2e-36 UniRef50_B2JX94 Rubredoxin-type Fe(Cys)4 protein n=1 Tax=Burkhol... 152 5e-36 UniRef50_D2LGL4 Rubredoxin n=1 Tax=Rhodomicrobium vannielii ATCC... 147 1e-34 UniRef50_Q03009 Probable rubredoxin hupJ n=8 Tax=Alphaproteobact... 143 2e-33 UniRef50_A0LAK5 Putative uncharacterized protein n=1 Tax=Magneto... 140 2e-32 UniRef50_A0P1N2 Putative uncharacterized protein n=1 Tax=Labrenz... 137 9e-32 UniRef50_A1VNP7 HupJ, contains rubredoxin domain n=1 Tax=Polarom... 137 1e-31 UniRef50_P30781 Hydrogenase expression/formation protein hoxT n=... 137 2e-31 UniRef50_C7I140 Putative uncharacterized protein n=1 Tax=Thiomon... 137 2e-31 UniRef50_Q2BN46 HupJ, contains rubredoxin domain n=1 Tax=Neptuni... 135 4e-31 UniRef50_C7RPY8 Putative uncharacterized protein n=1 Tax=Candida... 131 7e-30 UniRef50_A1KC57 Probable Hydrogenase expression/formation protei... 131 1e-29 UniRef50_P28152 Hydrogenase expression/formation protein hupJ n=... 130 2e-29 UniRef50_P48341 Hydrogenase expression/formation protein hupJ n=... 129 2e-29 UniRef50_A4YNU3 Hydrogenase expression/formation protein hupJ n=... 128 5e-29 UniRef50_B3QGV5 HupJ protein n=6 Tax=Rhodopseudomonas palustris ... 120 1e-26 Sequences not found previously or not previously below threshold: UniRef50_Q1LNV3 HupJ, contains rubredoxin domain n=1 Tax=Cupriav... 116 3e-25 UniRef50_A2SJN3 Putative uncharacterized protein n=1 Tax=Methyli... 115 6e-25 UniRef50_P31913 Protein hoxT n=1 Tax=Ralstonia eutropha H16 RepI... 111 8e-24 UniRef50_P95501 HupJ protein n=1 Tax=Pseudomonas hydrogenovora R... 106 3e-22 UniRef50_Q2W3V9 Hydrogenase expression/formation protein hupT n=... 104 9e-22 UniRef50_A4JRG1 HupJ, contains rubredoxin domain n=1 Tax=Burkhol... 97 1e-19 UniRef50_C5S8Z5 Putative uncharacterized protein n=1 Tax=Allochr... 48 9e-05 UniRef50_Q1KZW8 HupJ n=1 Tax=Bradyrhizobium sp. UPM1167 RepID=Q1... 40 0.040 >UniRef50_Q8XBW0 Hydrogenase-2 operon protein hybE n=100 Tax=Enterobacteriaceae RepID=HYBE_ECO57 Length = 162 Score = 233 bits (595), Expect = 1e-60, Method: Composition-based stats. Identities = 161/162 (99%), Positives = 161/162 (99%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 MTEEIAGFQTSPKAQVQAAFEEIARRSMH LSFLHPSMPVYVSDFTLFEGQWTGCVITPW Sbjct: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHALSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI Sbjct: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 Query: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA Sbjct: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 >UniRef50_D1P1M6 Hydrogenase-2 operon protein HybE n=2 Tax=Providencia RepID=D1P1M6_9ENTR Length = 166 Score = 214 bits (545), Expect = 9e-55, Method: Composition-based stats. Identities = 95/161 (59%), Positives = 122/161 (75%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M +I G+ +P+ VQAAFE ++ +SMHDLSFLHP+M +Y S F++FE QW G VITPW Sbjct: 6 MPSDIQGYSNNPQPLVQAAFERVSEQSMHDLSFLHPTMGIYASPFSVFENQWVGVVITPW 65 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 MLSA+I PGPDQ W R V EK+GL LPYG MT+TVGEL+G++QYL+CSLMSPL ++ Sbjct: 66 MLSAIILPGPDQYWEHRTVGEKLGLILPYGEMTYTVGELEGLTQYLACSLMSPLDRKLTA 125 Query: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGEN 161 E+G L DDCARM+LSLPVT+P+VP + R +F R G+ Sbjct: 126 EQGVHLADDCARMLLSLPVTDPNVPKSPERRAVFARYLGDK 166 >UniRef50_C6C9A6 Hydrogenase 2-specific chaperone n=6 Tax=Enterobacteriaceae RepID=C6C9A6_DICDC Length = 186 Score = 204 bits (519), Expect = 7e-52, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 93/158 (58%) Query: 3 EEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWML 62 + G SP A ++A F IAR M L F +PV FTLFE QW GC++TPWM+ Sbjct: 29 PRVMGHDQSPVAWLEAEFSRIARERMQSLPFYRAGIPVQACGFTLFEQQWFGCLLTPWMM 88 Query: 63 SAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEE 122 S V+ PGP Q WP R VS+K+ L LP G + F VG D SQYL+CSLMSPL ++ E+ Sbjct: 89 SLVVLPGPQQQWPRRTVSDKLALSLPCGDVGFIVGATDDGSQYLTCSLMSPLDTALDAEQ 148 Query: 123 GQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGE 160 RL + ARM LSLPV + P R LFGR + Sbjct: 149 AVRLAEQSARMALSLPVADAAAPQNPGRRALFGRYRSQ 186 >UniRef50_D2BS21 Hydrogenase 2-specific chaperone n=4 Tax=Enterobacteriaceae RepID=D2BS21_DICD5 Length = 187 Score = 201 bits (512), Expect = 6e-51, Method: Composition-based stats. Identities = 76/159 (47%), Positives = 97/159 (61%), Gaps = 1/159 (0%) Query: 5 IAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSA 64 IAG SP A ++A F IA+ M L F +PV FTLFE QW GC++TPWMLS Sbjct: 29 IAGHDQSPVAWLEAEFNRIAQERMRLLPFYRDGIPVRACGFTLFEQQWFGCLLTPWMLSL 88 Query: 65 VIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQ 124 ++ PGP Q WP R++S ++ L LP G+M F V E D QYLSCSLMSPL ++ ++ Sbjct: 89 LVLPGPGQQWPRRELSTRLALALPCGSMKFVVSESDDGQQYLSCSLMSPLDSALGADQAL 148 Query: 125 RLTDDCARMILSLPVTNPDVP-HAGRRALLFGRRSGENA 162 +L ARM LSLPV + D P + RRAL RS +A Sbjct: 149 QLAQQSARMALSLPVQDADAPENLSRRALFSRYRSQRHA 187 >UniRef50_A1JQK2 Hydrogenase-2 operon protein n=8 Tax=Enterobacteriaceae RepID=A1JQK2_YERE8 Length = 172 Score = 197 bits (501), Expect = 1e-49, Method: Composition-based stats. Identities = 72/166 (43%), Positives = 95/166 (57%), Gaps = 7/166 (4%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M + IAG + +P A ++ F ++A M L F +P+ F LFE QW G ++TPW Sbjct: 1 MFDVIAGHEQNPAALLEQVFGQVAADEMRGLPFYRDHIPLRACGFQLFEQQWIGALLTPW 60 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELD-------GVSQYLSCSLMSP 113 MLS V+ PGP Q W R V E++ L LP G+++F V E+D G QYLS SLMSP Sbjct: 61 MLSLVVLPGPQQSWQRRAVGERLMLALPCGSISFIVSEIDFTVSEIAGCGQYLSRSLMSP 120 Query: 114 LSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSG 159 L S+S E +L + ARM LSLPV + D P RR LF + S Sbjct: 121 LDTSLSAERALQLAEQSARMALSLPVMDADAPANPRRRALFNKVSQ 166 >UniRef50_Q65PZ4 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65PZ4_MANSM Length = 170 Score = 194 bits (493), Expect = 8e-49, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 + E I GF+ +P Q E++A +M DL F +P + F FE QW G +TPW Sbjct: 14 LLELIDGFEQNPAELFQTEMEKVA-ENMKDLPFYREDIPCFCPKFVQFENQWIGMALTPW 72 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 MLS ++ PGP+Q W R V +KI L PY T+ FTV LD V QYLSCSL SPL ++S Sbjct: 73 MLSVLVLPGPNQQWKARTVGDKIALAFPYKTLNFTVSSLDNVPQYLSCSLHSPLEANLSK 132 Query: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFG 155 E +LT DC M+LSLP+ P R +FG Sbjct: 133 EHAVQLTKDCLTMLLSLPIKQ-KAPSDLNRRNMFG 166 >UniRef50_B3GYB5 Hydrogenase-2 operon protein HybE n=5 Tax=Pasteurellaceae RepID=B3GYB5_ACTP7 Length = 177 Score = 192 bits (488), Expect = 3e-48, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 96/154 (62%), Gaps = 2/154 (1%) Query: 2 TEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWM 61 E+ GF +P + E+I+ +M DL F +P + +F L+EGQW G V+TPWM Sbjct: 23 LSEVMGFNDNPGVLFRKEMEKISA-NMQDLPFYRYDIPCFAPNFILYEGQWIGSVLTPWM 81 Query: 62 LSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIE 121 +S VI PGP+QLW R V +K+ LQLPY MTFTV +D + QYLSCSL+SP+ +++ E Sbjct: 82 ISIVIIPGPEQLWEGRTVGDKLSLQLPYKAMTFTVSSIDSIPQYLSCSLLSPIDPNLTAE 141 Query: 122 EGQRLTDDCARMILSLPVTNPDVPHAGRRALLFG 155 + +LT DC M+LSLP+ VP +R + Sbjct: 142 QAVQLTKDCLTMLLSLPIKQ-QVPDISKRNIFSA 174 >UniRef50_A0KL83 Hydrogenase-2 operon protein HybE n=2 Tax=Gammaproteobacteria RepID=A0KL83_AERHH Length = 182 Score = 190 bits (482), Expect = 2e-47, Method: Composition-based stats. Identities = 76/159 (47%), Positives = 103/159 (64%), Gaps = 2/159 (1%) Query: 2 TEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWM 61 +E +GF T+P + A +E IA++ M L F HP+MP+ + TLFEGQW GCV+TPWM Sbjct: 18 AQEFSGFATNPAPLLVAQYERIAQQEMQALPFYHPAMPIVA-ECTLFEGQWLGCVLTPWM 76 Query: 62 LSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIE 121 LS V+ PGPDQLWP+R S+++ LQLP G +TF VG L Q L+CSLMSP+ + + Sbjct: 77 LSVVVLPGPDQLWPVRGSSDRLALQLPCGNLTFMVGALPETGQLLACSLMSPIDPHLGAD 136 Query: 122 EGQRLTDDCARMILSLPVTNPDVP-HAGRRALLFGRRSG 159 EG+ L +M+LSLPV + + RR L GRR+ Sbjct: 137 EGRALVSSTLKMLLSLPVQQGEGGVNLSRRRLFSGRRTD 175 >UniRef50_A4SLU9 Member of hyb operon n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SLU9_AERS4 Length = 160 Score = 189 bits (480), Expect = 3e-47, Method: Composition-based stats. Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 1/160 (0%) Query: 3 EEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWML 62 +E AGF T+P + A +E IAR M L F H +MP+ + LFE QW GCV+TPWML Sbjct: 2 QEFAGFATNPAPLLVAQYERIAREEMQGLPFYHATMPIVA-ECVLFEEQWLGCVLTPWML 60 Query: 63 SAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEE 122 S V+ PGPDQLWP+R+ S+++ LQLP G MTF VGEL Q L+CSLMSPL + E+ Sbjct: 61 SLVVLPGPDQLWPVRRSSDRLALQLPCGNMTFMVGELPETGQLLACSLMSPLDPHLGAEQ 120 Query: 123 GQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 G L +M+ SLP+ V R LFG R G+ A Sbjct: 121 GSSLVSSTLKMLHSLPLHQGAVGVDLGRRRLFGARRGQPA 160 >UniRef50_A6VNU5 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNU5_ACTSZ Length = 168 Score = 180 bits (456), Expect = 2e-44, Method: Composition-based stats. Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 2/149 (1%) Query: 5 IAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSA 64 + GF +P +Q E R +M L F ++P Y F L + QW G V+TPWMLS Sbjct: 17 VVGFSENPALLLQTEMER-TRPNMRSLPFFRENIPCYCPPFILLDNQWIGTVLTPWMLSL 75 Query: 65 VIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQ 124 VI PGP+Q W R + +K+G+ LPY T+ FTV +L+G+ YLS SL SPL+ ++ E+G Sbjct: 76 VILPGPNQEWETRPLGDKLGVALPYKTLMFTVSQLEGIPCYLSHSLASPLARKLTAEQGV 135 Query: 125 RLTDDCARMILSLPVTNPDVPHAGRRALL 153 +L DDC +M LS P+ P P RR + Sbjct: 136 QLADDCLKMALSFPLNQPQ-PDLKRRNIF 163 >UniRef50_Q478N6 Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica RCB RepID=Q478N6_DECAR Length = 183 Score = 175 bits (444), Expect = 4e-43, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 2/152 (1%) Query: 9 QTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFP 68 P A ++A + + + MHD+ F++ ++ V F +EG W G VITPW L+ V+ Sbjct: 22 DDDPTAFLEAHYRHVWQTRMHDMPFVNAALGVEAVGFARYEGDWLGVVITPWFLNLVLVY 81 Query: 69 GPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTD 128 G QLW E+ L LP GTM F + + Y C L++P+++ + + + + Sbjct: 82 GGGQLWGDIPAGERRYLNLPCGTMQFLADDDPDIGPYQYCPLIAPVTNLADMAQARVVAA 141 Query: 129 DCARMILSLPVTN--PDVPHAGRRALLFGRRS 158 D + + LP PD+P RR Sbjct: 142 DALKTVFGLPAAEPAPDLPPVAEGKPAVSRRG 173 >UniRef50_Q21R11 Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21R11_RHOFD Length = 165 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 6/151 (3%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M+ I SP V+AAF I + M D+ L+P++ V DF ++G W G V+TPW Sbjct: 1 MSPNI--HIVSPADAVEAAFSRIQQECMVDVPILNPALSVEAIDFQRWQGHWLGMVVTPW 58 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 +S ++ PG W +++ ++ P G F G + +Y SCSL SP+ S Sbjct: 59 CMSLLLLPGSIDNWVSTGENKRRFVRFPAGDFAFLGGHETELGEYQSCSLFSPMGKFSSQ 118 Query: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRA 151 E AR L +T P P A + Sbjct: 119 SEATM----TARASLVGLLTVPQPPQAVNKK 145 >UniRef50_B2IJ36 Rubredoxin n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJ36_BEII9 Length = 295 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 35/184 (19%) Query: 14 AQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQL 73 A+++A F EI M L FL+ ++ + F EGQ G +ITPW ++ V+ PGP + Sbjct: 108 ARMEALFREIHAGQMRGLPFLNDALGIKAVGFRAHEGQMLGVLITPWFMNLVLAPGPHED 167 Query: 74 WPLRKVSEKIGLQLPYGTMTFTVGELDG--------------------VSQYLSCSLMSP 113 W + K + P G FT G ++ Y +CSL SP Sbjct: 168 WSVLTSGGKELIAFPSGVYEFTFVNRQGPSGKGSSGNGQTGNSKAGLELTPYKACSLFSP 227 Query: 114 LSHSMSI----EEGQRLTDDCARMILSLPVTNPDVP-----------HAGRRALLFGRRS 158 +S ++ E + + L P P RR+LLFG R+ Sbjct: 228 MSDFTTMPQAIETAEAVLTALFDASLCPPRKEASEPEPVAKEEKEPFRPDRRSLLFGPRA 287 Query: 159 GENA 162 G++ Sbjct: 288 GDHG 291 >UniRef50_Q478M3 HupJ protein n=1 Tax=Dechloromonas aromatica RCB RepID=Q478M3_DECAR Length = 156 Score = 164 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 62/149 (41%), Gaps = 3/149 (2%) Query: 8 FQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDF-TLFEGQWTGCVITPWMLSAVI 66 + T P ++ A F+ IAR MHD+ + + V F +G W G +ITPW L+ + Sbjct: 4 WTTDPSPELVAVFDNIARTRMHDVPICNGKLQVEAVGFQRTADGHWAGAMITPWALNLLR 63 Query: 67 FPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRL 126 P WP+ K P G FTV E + Y CSL SP S E + Sbjct: 64 LPAQVDGWPVLAACSKHDWHFPSGNYEFTVAEEASIGNYHLCSLFSPALEFESHEAARLT 123 Query: 127 TDDCARMILSLPVTNPDVP--HAGRRALL 153 + P+ PD A RRA L Sbjct: 124 ALAAVHALFGEPLVAPDAAAKPASRRAFL 152 >UniRef50_Q6LB97 HupJ n=1 Tax=Oligotropha carboxidovorans OM5 RepID=Q6LB97_OLICO Length = 195 Score = 153 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 4/136 (2%) Query: 15 QVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLW 74 Q+ +F ++ M D F + S+ V F ++E + G ++ PW ++ V+ P D+ W Sbjct: 6 QLTESFRQVFNTKMRDTPFSNNSLNVEAIGFRIWENRIVGILMMPWCMNIVVLPATDEDW 65 Query: 75 PLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMI 134 ++ K P G F Y +CSL S ++ S + D AR Sbjct: 66 SQLRIGTKRNFAFPSGCYEFIFNNRPPAGGYFACSLFSSMAEFASQLQA----TDVARAA 121 Query: 135 LSLPVTNPDVPHAGRR 150 ++ ++ R Sbjct: 122 IAGLFDEGNLDEDTDR 137 >UniRef50_Q0A724 HupJ, contains rubredoxin domain n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A724_ALHEH Length = 153 Score = 153 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 9/155 (5%) Query: 8 FQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIF 67 + T ++AAF + M +++ +P++ V F ++G+ G +++PW L+ ++ Sbjct: 6 WLTQQVRLLEAAFHRVQAEQMAEIALANPALTVEAVGFHRYQGRPFGALLSPWFLNLILM 65 Query: 68 PGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLT 127 PG + W + LP G F V G+ + +CS+MSP+ Sbjct: 66 PGEGEDWEQLPERSEQHWALPAGVYLFHVCRAAGIGTFQACSIMSPVERVEDQ------- 118 Query: 128 DDCARMILSLPVTNPDVPHA-GRRALLFGRRSGEN 161 D RM+ + P RRA+L GR E Sbjct: 119 -DSFRMVAEAALRAVCRPSGHSRRAVLTGRFDDEG 152 >UniRef50_B2JX94 Rubredoxin-type Fe(Cys)4 protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JX94_BURP8 Length = 226 Score = 152 bits (383), Expect = 5e-36, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 13/166 (7%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M + F +++ FE+IA+ M DL FL+ + V F ++ W G ++TPW Sbjct: 57 MAPTASSFSADLTHRIEGTFEQIAQTRMCDLPFLNSRLRVAAVAFRPWQSSWIGVLVTPW 116 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 ++ + P D +P + + LP G M F LD + ++ CSL SP Sbjct: 117 GINLLQLPKSDAPFPPTRADAVTEVALPGGIMPFMPARLDTLGEFRMCSLFSPARQFADQ 176 Query: 121 EEGQRLTDDCARMILSL-------------PVTNPDVPHAGRRALL 153 + R++ +P+ P RR L Sbjct: 177 ATALVTAWETMRLLFEPESVAQPKVGPDGSAQVHPERPDRFRRCLF 222 >UniRef50_D2LGL4 Rubredoxin n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL4_RHOVA Length = 177 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 10/165 (6%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M+E A + +++A FE I M D+ L+P + V G W ++TPW Sbjct: 1 MSEAQADEAAAVARRLEAVFERIHATRMADVPLLNPRLAVAAVGPRDVGGLWLAVLVTPW 60 Query: 61 MLSAVIFPGPDQL---WPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHS 117 ++A++ P + W KI LP G F G G+ Y CSL SP++ Sbjct: 61 FINAMLLPKTAEDVESWGEAPSGAKISHALPAGMFEFIAGGEAGLGPYRMCSLFSPVTQF 120 Query: 118 MSIEEGQRLTDDCARMILSLPVTNPDV------PHAGRRALLFGR 156 + + + A L +PD P RR L+FGR Sbjct: 121 -EDQNAALIAAEAALAALLDSGHHPDAEAARRKPQLSRRGLIFGR 164 >UniRef50_Q03009 Probable rubredoxin hupJ n=8 Tax=Alphaproteobacteria RepID=HUPJ_RHOCA Length = 278 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 4/143 (2%) Query: 16 VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWP 75 + A F EI M D+ ++ ++ + F EG+ G +++PW ++ + P + W Sbjct: 95 LVADFREIWHSKMRDVPLVNKALSIEAVGFRSHEGRGLGVLVSPWFMNLIQLPAAGEDWS 154 Query: 76 LRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMIL 135 K L+ P G F + V Y +CSL + + + D AR ++ Sbjct: 155 GLIPGVKEDLEFPSGLYEFIHNRREMVGGYKACSLYPTMGDFQTQMQAV----DLARAVM 210 Query: 136 SLPVTNPDVPHAGRRALLFGRRS 158 + R A + R+ Sbjct: 211 IELFKAENRAETDRAAEIRASRT 233 >UniRef50_A0LAK5 Putative uncharacterized protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAK5_MAGSM Length = 215 Score = 140 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 2/140 (1%) Query: 9 QTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFP 68 S Q++ F I + M + L+P + V F ++ W G VITPW+++ V P Sbjct: 3 AQSLMQQLETTFTAIHKNQMQGIPLLNPMIRVEAVGFQRWQVGWLGVVITPWLMNLVYIP 62 Query: 69 GPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTD 128 + +K + P + T V + GV + S S+ SP+ + Sbjct: 63 DDASALEAAPLGDKQVHRFPERSYTMLVNDFAGVGRCWSFSIHSPMGEFP-AHDAAVARA 121 Query: 129 DCARMILSLPVTNPDVPHAG 148 + +L P + P Sbjct: 122 EAFLALLLTP-QQGEEPQDD 140 >UniRef50_A0P1N2 Putative uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1N2_9RHOB Length = 196 Score = 137 bits (346), Expect = 9e-32, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 1/115 (0%) Query: 6 AGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAV 65 T+ +++ F ++ M + L+ + V + G W G +ITPW ++ V Sbjct: 1 MSNATAITDRLETCFRQVHAERMSGIPILNEKLGVRAVGIVPWNGFWFGALITPWFMNLV 60 Query: 66 IFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 + + + + EK P G F G D + + CSL SP+ + Sbjct: 61 LI-AQEPDQNIIRSGEKRLFVFPAGRFEFIRGHEDHLGAFWMCSLFSPVFEFEDM 114 >UniRef50_A1VNP7 HupJ, contains rubredoxin domain n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VNP7_POLNA Length = 180 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 11/157 (7%) Query: 16 VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLF-------EGQWTGCVITPWMLSAVIFP 68 + A ++ IA M + L+P++ V F L E G +ITPW ++ V P Sbjct: 16 LAALYQHIASTRMQGIPLLNPAVQVEAVGFELVKPEGNEPETTGIGVLITPWFMNLVWLP 75 Query: 69 GPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPL---SHSMSIEEGQR 125 +L ++V K+ + F DG Y +CSL SP+ + + + Sbjct: 76 -LRRLDLAKQVGSKVPRYVGRECFEFIAAHEDGFGSYEACSLFSPVFEFENHQAAVATAQ 134 Query: 126 LTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 D R S RRA LFGR S A Sbjct: 135 AVLDTLRQPASAAAQAVLPQAPARRAFLFGRSSAVAA 171 >UniRef50_P30781 Hydrogenase expression/formation protein hoxT n=3 Tax=Azotobacter RepID=HOXT_AZOVI Length = 153 Score = 137 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 5/144 (3%) Query: 19 AFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQW-TGCVITPWMLSAVIFPGPDQLWPLR 77 A +A M L +P++ V + + EG G +ITPW ++ P D P Sbjct: 9 AHYRVAGARMAGLPVYNPALTVELLGWRAVEGVGALGVLITPWCMNLFWQPPADAELP-- 66 Query: 78 KVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSL 137 E+ L LP G T+ E + + ++ S SL SP+ E + + + R+IL++ Sbjct: 67 ASGERAVLSLPSGDYECTLHEDERLGRHASASLCSPMQDFPGQAEARAMAGEVLRLILAV 126 Query: 138 PVTNPDVPHAG--RRALLFGRRSG 159 P P+ +G R LF R G Sbjct: 127 PEAGPEPSRSGLLSRRALFRRALG 150 >UniRef50_C7I140 Putative uncharacterized protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I140_THIIN Length = 168 Score = 137 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 12/158 (7%) Query: 10 TSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVI--F 67 T+ ++ A+ EI M L ++P++ V V ++G G ++TPW ++ + Sbjct: 9 TAIGRTLEQAYSEIQHTRMRGLPIVNPALQVAVVGLRAWDGLCIGVLVTPWCMNLLALSL 68 Query: 68 PGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLT 127 PG L P L LP G + V YLS SL SP+ S E Sbjct: 69 PGGRTLLPA-TAGTIRTLDLPAGRYDLLAAHMPQVGHYLSGSLYSPMDAFTSQHEAVAAA 127 Query: 128 DDCARMILSLPVTNPDVP---------HAGRRALLFGR 156 ++ P P A RR+ LF R Sbjct: 128 RAALDLLFDAGAQAPAEPVPSGAVATDVASRRSFLFRR 165 >UniRef50_Q2BN46 HupJ, contains rubredoxin domain n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN46_9GAMM Length = 184 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 45/112 (40%) Query: 24 ARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKI 83 A M DL + ++ + + E + +ITPW ++ ++ P K Sbjct: 16 ADSRMQDLPVYNKALNIELVGAKALETGFVAVLITPWCMNLILMPEQADKTERLAAGSKK 75 Query: 84 GLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMIL 135 + P G F ELDGVS +LSCSL SP+S + + + Sbjct: 76 LIGFPSGQYEFIQNELDGVSGFLSCSLFSPMSQFVDQAGAVETAEQVMLQLF 127 >UniRef50_C7RPY8 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RPY8_9PROT Length = 210 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 58/185 (31%), Gaps = 37/185 (20%) Query: 9 QTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLF-------------------- 48 P ++ ++ I SM DL F++P++ V F + Sbjct: 22 AVDPTPLLETMYQRIWATSMRDLPFINPALSVEAVGFRRWQSLTASPLAEDNSPQPSGDP 81 Query: 49 --------EGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGEL- 99 +G W G ++TPW ++ + PG LW R + ++ P G + F Sbjct: 82 AGRSRPSAQGDWVGALVTPWFINLFVLPGGGNLWSDRPAGARCHIEFPIGPLEFIADHDG 141 Query: 100 -DGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPV-------TNPDVPHAGRRA 151 + Y C L +P S + + S P + R Sbjct: 142 SAEIPAYQYCPLFAPPGQFASQTAARAAALAALAALFSNPSPPDTEAPKSAVAKTGASRR 201 Query: 152 LLFGR 156 F R Sbjct: 202 AFFRR 206 >UniRef50_A1KC57 Probable Hydrogenase expression/formation protein n=1 Tax=Azoarcus sp. BH72 RepID=A1KC57_AZOSB Length = 188 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 48/102 (47%) Query: 19 AFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRK 78 F+ IAR M L +P++ V V F+G+W G ++TPW +S V+ PG + Sbjct: 28 CFQHIARTRMAGLPICNPALGVAVPALLPFQGEWLGALVTPWAISLVLLPGEGTRFRAIG 87 Query: 79 VSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 V + P G +F + G+ Y +CSL SP+ Sbjct: 88 VGDSQDWDFPSGRYSFLGHQEAGLGAYQTCSLASPVFEFADQ 129 >UniRef50_P28152 Hydrogenase expression/formation protein hupJ n=1 Tax=Rhizobium leguminosarum bv. viciae RepID=HUPJ_RHILV Length = 174 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 4/150 (2%) Query: 15 QVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQ-L 73 Q++ + EI +M D+ +P++ V + F + G+ G V TPW ++ V PD Sbjct: 20 QLEMRYREIYATAMADVPICNPALGVAATGFRTYGGRALGIVTTPWFMNLVAADLPDGVP 79 Query: 74 WPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARM 133 + + LP G + F G+LD + + SCSL SP+ ++E ++ R Sbjct: 80 TGPAATGTTLRVNLPAGEVEFIAGQLDAIGRIDSCSLFSPVFEFATMEAALETAEEAVRA 139 Query: 134 IL---SLPVTNPDVPHAGRRALLFGRRSGE 160 +L RR LL G G Sbjct: 140 FFDPATLEPPPAPPAAVNRRDLLRGHFRGR 169 >UniRef50_P48341 Hydrogenase expression/formation protein hupJ n=3 Tax=Bradyrhizobium RepID=HUPJ_BRAJA Length = 169 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 10/157 (6%) Query: 13 KAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQ 72 + ++ EI R+M DL + ++ V F F G G ++TPW ++ V+ P Sbjct: 16 GDLLAGSYREIGERAMRDLPIYNDALGVEAVGFRAFNGTIVGIMVTPWFMNVVL---PAS 72 Query: 73 LWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCAR 132 ++ P G + FT+ E+ + + SCSL SP+ ++ + + Sbjct: 73 AVAQATSGATARIRFPAGDIEFTISEVGQIGRIASCSLFSPMFQFADMDAARATAEAALA 132 Query: 133 MIL-------SLPVTNPDVPHAGRRALLFGRRSGENA 162 ++ ++ P RR L G + Sbjct: 133 ELMLPADSEEAVRRREPATTPIDRRNFLRGTLTERRG 169 >UniRef50_A4YNU3 Hydrogenase expression/formation protein hupJ n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YNU3_BRASO Length = 165 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 17/172 (9%) Query: 1 MTEEIAGFQTS---PKAQ---VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTG 54 M+ AG T P A + + EI R+M +L H ++ V FT G+ G Sbjct: 1 MSAVAAGQGTDQLTPAAWGERLAGIYREIGDRAMRELPIYHDALAVDAIGFTSVVGRTIG 60 Query: 55 CVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPL 114 ++TPW ++ V D V I + LP G+ F + ++ GV + SCSL SP+ Sbjct: 61 ILVTPWFMNVVTPAEGD-------VGSTIDVALPAGSFGFAISDVAGVGRIASCSLFSPM 113 Query: 115 SHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAG----RRALLFGRRSGENA 162 S + + + +L+ P D RRA L G S A Sbjct: 114 SEFEDMAAARVAAEAALAALLTAPEDEADTARVSRGIERRAFLRGTLSESRA 165 >UniRef50_B3QGV5 HupJ protein n=6 Tax=Rhodopseudomonas palustris RepID=B3QGV5_RHOPT Length = 174 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 11/138 (7%) Query: 28 MHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQL 87 M DL +P++ V F + G ++TPW ++ V P D R E + L Sbjct: 31 MRDLPVFNPALDVAAIGFRALDDHAFGVIVTPWFMNLVRLP-LDPATAGRSQGEVVTRVL 89 Query: 88 PYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSL--------PV 139 P G + FT+G+LDG+ + SCSL SP+ + + +L P Sbjct: 90 PVGALEFTIGQLDGIGRIESCSLFSPMFDFADQSTAEAAAEAALAAVLKPEQVADETSPS 149 Query: 140 TNPD--VPHAGRRALLFG 155 P RR LL G Sbjct: 150 QAPSKMATTLDRRGLLRG 167 >UniRef50_Q1LNV3 HupJ, contains rubredoxin domain n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LNV3_RALME Length = 158 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 10/157 (6%) Query: 13 KAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLF---EGQWTGCVITPWMLSAVIFPG 69 A + + + ++ + M + L+P++ V F E G +ITPW +S V P Sbjct: 5 VAALVSFYRQVETKRMQGIPILNPALSVEAVGFRPADADETVSEGVLITPWFMSLVRLPL 64 Query: 70 PDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQ----R 125 Q R V K + F + + +C+L SP++ S ++ + Sbjct: 65 AVQDHGGR-VGRKRVMAFGKERFDFIGAHDPDIGFHEACALFSPMADFRSQDQARDTALA 123 Query: 126 LTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 + D + +P RRA R +G + Sbjct: 124 VLDQLRPPPPAAKPVAETIP--ARRAFFLARGAGVRS 158 >UniRef50_A2SJN3 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SJN3_METPP Length = 230 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 13/159 (8%) Query: 16 VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLF------------EGQWTGCVITPWMLS 63 + F I R M + L+P++ V F + + G ++TPW ++ Sbjct: 71 LVDLFRGIERDRMAGVPVLNPALQVEAVGFEPAFDPAIADPESGGDVEAVGILVTPWFMN 130 Query: 64 AVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEG 123 V P + + V + F G Y +CSL SP+ + Sbjct: 131 LVTMPLERRDD-VACVGVSRTRPVGSENFDFIGGHEPAFGSYAACSLFSPMFEFVDQAAA 189 Query: 124 QRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 + P RR+ L GR S A Sbjct: 190 VATARAVLTTLRVPVAAVEQTPSPARRSFLLGRSSATGA 228 >UniRef50_P31913 Protein hoxT n=1 Tax=Ralstonia eutropha H16 RepID=HOXT_RALEH Length = 179 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 15/144 (10%) Query: 16 VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQW------TGCVITPWMLSAVIFPG 69 ++ AF IA M D+ ++ ++ V F G +ITPW ++ + Sbjct: 17 LEEAFCCIAATRMADIPVVNRALSVEALGFEQCAESAGGSDGEMGILITPWFMNLIWLAP 76 Query: 70 -----PDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQ 124 ++ V + + F Y CSL SP+ + + Sbjct: 77 YGPCLGERDASTLPVGKTCMRRFGSHDFEFIGASEPQFGPYQFCSLFSPMFEFANQASAR 136 Query: 125 RLTDDCARMILSLPVTNPDVPHAG 148 + R++ +PD P Sbjct: 137 ATATEVLRLL----RASPDAPLPP 156 >UniRef50_P95501 HupJ protein n=1 Tax=Pseudomonas hydrogenovora RepID=P95501_9PSED Length = 197 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 64/189 (33%), Gaps = 30/189 (15%) Query: 3 EEIAGFQTSPK-----AQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLF------EGQ 51 ++ G P+ A ++ AF IA M L L+P++ V F G Sbjct: 7 QKAGGDAADPQLAARVAVLEHAFTTIAHERMAGLPVLNPNLSVEAIGFERVAGAADEAGH 66 Query: 52 WTGCVITPWMLSAVIFP-------GPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQ 104 G + TPW +S V P D P + T F G+ Sbjct: 67 ALGILATPWFMSLVWLPLSPSVAGRADGGVPAVSPDQVGPRTFGEHTFDFMPNWQSGLGA 126 Query: 105 YLSCSLMSPLSHSMSIEEGQRLTDDCARMILSL-----------PVTNPDVPHAGRRALL 153 + SCSL+SP+ S + + + + R++ + P P RR L Sbjct: 127 FESCSLVSPMDEFASQADVRAIAVEILRVLRTARDRQDVSPQRTPARMAGAP-LDRRRFL 185 Query: 154 FGRRSGENA 162 FG S Sbjct: 186 FGGLSAAEG 194 >UniRef50_Q2W3V9 Hydrogenase expression/formation protein hupT n=3 Tax=Magnetospirillum RepID=Q2W3V9_MAGSA Length = 157 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 1/144 (0%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M + ++ + ++ + F I M DL +P++ V F ++G G ++TPW Sbjct: 1 MADPLSPADQTRIRELVSVFARIGEERMKDLGLYNPALQVEAVGFRQWQGWLAGILVTPW 60 Query: 61 MLSAVIFPGPD-QLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMS 119 ++ ++ PG D + + + + LP G + F VGE++ V YLS S+ SP+ Sbjct: 61 FMNFMLLPGSDTENLAGVEPGSRRRIDLPKGQVVFVVGEVEEVGPYLSHSIHSPMGQFPD 120 Query: 120 IEEGQRLTDDCARMILSLPVTNPD 143 P P Sbjct: 121 HASASTTAWAAVGPYFQEPGEEPQ 144 >UniRef50_A4JRG1 HupJ, contains rubredoxin domain n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JRG1_BURVG Length = 170 Score = 97.4 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 9/154 (5%) Query: 16 VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLF------EGQWTGCVITPWMLSAVIFPG 69 + A + +A +M + +HP + V F + G G ++TPW ++ V PG Sbjct: 17 LVAHYTTVAATTMLGMPVVHPGLRVEAVAFGPYPARGDASGDLLGILVTPWFMNLVWLPG 76 Query: 70 PDQLWPLRKV-SEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTD 128 + + ++ + + + CSL SP+ Sbjct: 77 GNSAAHPCPSPGQLAARRVGAVEFDWIGAHVPQAGAHACCSLFSPMFDFSDHASAVATAR 136 Query: 129 DCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 + S P P RR L R + A Sbjct: 137 AVLAQLRSAAADAP--PRTSRREFLLRRPATREA 168 >UniRef50_C5S8Z5 Putative uncharacterized protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S8Z5_CHRVI Length = 186 Score = 48.5 bits (114), Expect = 9e-05, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 14/135 (10%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 + E + + A V A E + R ++ L+ ++PV V E V+TPW Sbjct: 9 LCSEELDEEQALSAAVIAIHERLLRETLAGDPMLNLALPVEVRALRRVEDWRVLLVLTPW 68 Query: 61 MLSAVIFP------GPDQLWPLRK--------VSEKIGLQLPYGTMTFTVGELDGVSQYL 106 ML+ ++FP + W + + ++G L + +G D + YL Sbjct: 69 MLARLLFPDRPPPLALPEGWSAAERADAEYLVLGPRLGFALFGQSQQAHLGYHDRLGHYL 128 Query: 107 SCSLMSPLSHSMSIE 121 L + + Sbjct: 129 LQPLCLNMEPYRDAD 143 >UniRef50_Q1KZW8 HupJ n=1 Tax=Bradyrhizobium sp. UPM1167 RepID=Q1KZW8_9BRAD Length = 174 Score = 39.6 bits (91), Expect = 0.040, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 11/142 (7%) Query: 1 MTEEIAGFQTSPKAQVQAAFE-------EIARRSMHDLSFLHPSMPVYV-SDFTLFEGQW 52 M E F+ A++ A+ E +IA R+M S L+ P S F EG+ Sbjct: 1 MLERGQDFRRRKHAELSASDEMLGAACWDIAGRAMRPRSVLNDPCPGSTRSGFARAEGRG 60 Query: 53 TGCVITPWMLSAVIFPGPDQ-LWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLM 111 + PW + + G W + S ++ G + E+ +S C L+ Sbjct: 61 DSVMGAPWAMKVAVCLGNGTCSWHAGQRSNLRSVR--SGDVELVFSEIAPLSSSTCCFLL 118 Query: 112 SPLSHSMSIEEGQRLTDDCARM 133 SP S + A M Sbjct: 119 SPSSARKDVGGAIAEVAVPAMM 140 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8XBW0 Hydrogenase-2 operon protein hybE n=100 Tax=Ente... 207 1e-52 UniRef50_D1P1M6 Hydrogenase-2 operon protein HybE n=2 Tax=Provid... 197 1e-49 UniRef50_C6C9A6 Hydrogenase 2-specific chaperone n=6 Tax=Enterob... 192 3e-48 UniRef50_D2BS21 Hydrogenase 2-specific chaperone n=4 Tax=Enterob... 189 2e-47 UniRef50_A1JQK2 Hydrogenase-2 operon protein n=8 Tax=Enterobacte... 182 5e-45 UniRef50_B3GYB5 Hydrogenase-2 operon protein HybE n=5 Tax=Pasteu... 181 5e-45 UniRef50_Q65PZ4 Putative uncharacterized protein n=1 Tax=Mannhei... 181 6e-45 UniRef50_A0KL83 Hydrogenase-2 operon protein HybE n=2 Tax=Gammap... 177 1e-43 UniRef50_A4SLU9 Member of hyb operon n=1 Tax=Aeromonas salmonici... 175 4e-43 UniRef50_Q478N6 Putative uncharacterized protein n=1 Tax=Dechlor... 172 2e-42 UniRef50_Q21R11 Putative uncharacterized protein n=1 Tax=Rhodofe... 169 3e-41 UniRef50_Q478M3 HupJ protein n=1 Tax=Dechloromonas aromatica RCB... 167 1e-40 UniRef50_A6VNU5 Putative uncharacterized protein n=1 Tax=Actinob... 164 7e-40 UniRef50_B2IJ36 Rubredoxin n=1 Tax=Beijerinckia indica subsp. in... 162 3e-39 UniRef50_B2JX94 Rubredoxin-type Fe(Cys)4 protein n=1 Tax=Burkhol... 159 4e-38 UniRef50_Q03009 Probable rubredoxin hupJ n=8 Tax=Alphaproteobact... 156 2e-37 UniRef50_Q6LB97 HupJ n=1 Tax=Oligotropha carboxidovorans OM5 Rep... 154 7e-37 UniRef50_Q0A724 HupJ, contains rubredoxin domain n=1 Tax=Alkalil... 151 9e-36 UniRef50_A0LAK5 Putative uncharacterized protein n=1 Tax=Magneto... 146 3e-34 UniRef50_A1VNP7 HupJ, contains rubredoxin domain n=1 Tax=Polarom... 144 7e-34 UniRef50_Q2BN46 HupJ, contains rubredoxin domain n=1 Tax=Neptuni... 144 8e-34 UniRef50_D2LGL4 Rubredoxin n=1 Tax=Rhodomicrobium vannielii ATCC... 144 9e-34 UniRef50_A0P1N2 Putative uncharacterized protein n=1 Tax=Labrenz... 144 1e-33 UniRef50_Q1LNV3 HupJ, contains rubredoxin domain n=1 Tax=Cupriav... 143 2e-33 UniRef50_P48341 Hydrogenase expression/formation protein hupJ n=... 143 2e-33 UniRef50_C7I140 Putative uncharacterized protein n=1 Tax=Thiomon... 142 3e-33 UniRef50_P31913 Protein hoxT n=1 Tax=Ralstonia eutropha H16 RepI... 141 8e-33 UniRef50_P28152 Hydrogenase expression/formation protein hupJ n=... 137 1e-31 UniRef50_A4YNU3 Hydrogenase expression/formation protein hupJ n=... 136 2e-31 UniRef50_A2SJN3 Putative uncharacterized protein n=1 Tax=Methyli... 136 3e-31 UniRef50_P95501 HupJ protein n=1 Tax=Pseudomonas hydrogenovora R... 135 3e-31 UniRef50_C7RPY8 Putative uncharacterized protein n=1 Tax=Candida... 135 4e-31 UniRef50_A4JRG1 HupJ, contains rubredoxin domain n=1 Tax=Burkhol... 135 7e-31 UniRef50_P30781 Hydrogenase expression/formation protein hoxT n=... 135 7e-31 UniRef50_A1KC57 Probable Hydrogenase expression/formation protei... 131 7e-30 UniRef50_Q2W3V9 Hydrogenase expression/formation protein hupT n=... 130 2e-29 UniRef50_B3QGV5 HupJ protein n=6 Tax=Rhodopseudomonas palustris ... 127 2e-28 UniRef50_C5S8Z5 Putative uncharacterized protein n=1 Tax=Allochr... 102 4e-21 Sequences not found previously or not previously below threshold: UniRef50_B5EKX4 Putative uncharacterized protein n=1 Tax=Acidith... 58 9e-08 >UniRef50_Q8XBW0 Hydrogenase-2 operon protein hybE n=100 Tax=Enterobacteriaceae RepID=HYBE_ECO57 Length = 162 Score = 207 bits (527), Expect = 1e-52, Method: Composition-based stats. Identities = 161/162 (99%), Positives = 161/162 (99%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 MTEEIAGFQTSPKAQVQAAFEEIARRSMH LSFLHPSMPVYVSDFTLFEGQWTGCVITPW Sbjct: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHALSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI Sbjct: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 Query: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA Sbjct: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 >UniRef50_D1P1M6 Hydrogenase-2 operon protein HybE n=2 Tax=Providencia RepID=D1P1M6_9ENTR Length = 166 Score = 197 bits (501), Expect = 1e-49, Method: Composition-based stats. Identities = 95/161 (59%), Positives = 122/161 (75%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M +I G+ +P+ VQAAFE ++ +SMHDLSFLHP+M +Y S F++FE QW G VITPW Sbjct: 6 MPSDIQGYSNNPQPLVQAAFERVSEQSMHDLSFLHPTMGIYASPFSVFENQWVGVVITPW 65 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 MLSA+I PGPDQ W R V EK+GL LPYG MT+TVGEL+G++QYL+CSLMSPL ++ Sbjct: 66 MLSAIILPGPDQYWEHRTVGEKLGLILPYGEMTYTVGELEGLTQYLACSLMSPLDRKLTA 125 Query: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGEN 161 E+G L DDCARM+LSLPVT+P+VP + R +F R G+ Sbjct: 126 EQGVHLADDCARMLLSLPVTDPNVPKSPERRAVFARYLGDK 166 >UniRef50_C6C9A6 Hydrogenase 2-specific chaperone n=6 Tax=Enterobacteriaceae RepID=C6C9A6_DICDC Length = 186 Score = 192 bits (489), Expect = 3e-48, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 93/158 (58%) Query: 3 EEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWML 62 + G SP A ++A F IAR M L F +PV FTLFE QW GC++TPWM+ Sbjct: 29 PRVMGHDQSPVAWLEAEFSRIARERMQSLPFYRAGIPVQACGFTLFEQQWFGCLLTPWMM 88 Query: 63 SAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEE 122 S V+ PGP Q WP R VS+K+ L LP G + F VG D SQYL+CSLMSPL ++ E+ Sbjct: 89 SLVVLPGPQQQWPRRTVSDKLALSLPCGDVGFIVGATDDGSQYLTCSLMSPLDTALDAEQ 148 Query: 123 GQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGE 160 RL + ARM LSLPV + P R LFGR + Sbjct: 149 AVRLAEQSARMALSLPVADAAAPQNPGRRALFGRYRSQ 186 >UniRef50_D2BS21 Hydrogenase 2-specific chaperone n=4 Tax=Enterobacteriaceae RepID=D2BS21_DICD5 Length = 187 Score = 189 bits (481), Expect = 2e-47, Method: Composition-based stats. Identities = 73/157 (46%), Positives = 93/157 (59%) Query: 5 IAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSA 64 IAG SP A ++A F IA+ M L F +PV FTLFE QW GC++TPWMLS Sbjct: 29 IAGHDQSPVAWLEAEFNRIAQERMRLLPFYRDGIPVRACGFTLFEQQWFGCLLTPWMLSL 88 Query: 65 VIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQ 124 ++ PGP Q WP R++S ++ L LP G+M F V E D QYLSCSLMSPL ++ ++ Sbjct: 89 LVLPGPGQQWPRRELSTRLALALPCGSMKFVVSESDDGQQYLSCSLMSPLDSALGADQAL 148 Query: 125 RLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGEN 161 +L ARM LSLPV + D P R LF R + Sbjct: 149 QLAQQSARMALSLPVQDADAPENLSRRALFSRYRSQR 185 >UniRef50_A1JQK2 Hydrogenase-2 operon protein n=8 Tax=Enterobacteriaceae RepID=A1JQK2_YERE8 Length = 172 Score = 182 bits (461), Expect = 5e-45, Method: Composition-based stats. Identities = 72/166 (43%), Positives = 95/166 (57%), Gaps = 7/166 (4%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M + IAG + +P A ++ F ++A M L F +P+ F LFE QW G ++TPW Sbjct: 1 MFDVIAGHEQNPAALLEQVFGQVAADEMRGLPFYRDHIPLRACGFQLFEQQWIGALLTPW 60 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELD-------GVSQYLSCSLMSP 113 MLS V+ PGP Q W R V E++ L LP G+++F V E+D G QYLS SLMSP Sbjct: 61 MLSLVVLPGPQQSWQRRAVGERLMLALPCGSISFIVSEIDFTVSEIAGCGQYLSRSLMSP 120 Query: 114 LSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSG 159 L S+S E +L + ARM LSLPV + D P RR LF + S Sbjct: 121 LDTSLSAERALQLAEQSARMALSLPVMDADAPANPRRRALFNKVSQ 166 >UniRef50_B3GYB5 Hydrogenase-2 operon protein HybE n=5 Tax=Pasteurellaceae RepID=B3GYB5_ACTP7 Length = 177 Score = 181 bits (460), Expect = 5e-45, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 96/154 (62%), Gaps = 2/154 (1%) Query: 2 TEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWM 61 E+ GF +P + E+I+ +M DL F +P + +F L+EGQW G V+TPWM Sbjct: 23 LSEVMGFNDNPGVLFRKEMEKISA-NMQDLPFYRYDIPCFAPNFILYEGQWIGSVLTPWM 81 Query: 62 LSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIE 121 +S VI PGP+QLW R V +K+ LQLPY MTFTV +D + QYLSCSL+SP+ +++ E Sbjct: 82 ISIVIIPGPEQLWEGRTVGDKLSLQLPYKAMTFTVSSIDSIPQYLSCSLLSPIDPNLTAE 141 Query: 122 EGQRLTDDCARMILSLPVTNPDVPHAGRRALLFG 155 + +LT DC M+LSLP+ VP +R + Sbjct: 142 QAVQLTKDCLTMLLSLPIKQ-QVPDISKRNIFSA 174 >UniRef50_Q65PZ4 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65PZ4_MANSM Length = 170 Score = 181 bits (460), Expect = 6e-45, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 + E I GF+ +P Q E++A +M DL F +P + F FE QW G +TPW Sbjct: 14 LLELIDGFEQNPAELFQTEMEKVA-ENMKDLPFYREDIPCFCPKFVQFENQWIGMALTPW 72 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 MLS ++ PGP+Q W R V +KI L PY T+ FTV LD V QYLSCSL SPL ++S Sbjct: 73 MLSVLVLPGPNQQWKARTVGDKIALAFPYKTLNFTVSSLDNVPQYLSCSLHSPLEANLSK 132 Query: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFG 155 E +LT DC M+LSLP+ P R +FG Sbjct: 133 EHAVQLTKDCLTMLLSLPIKQ-KAPSDLNRRNMFG 166 >UniRef50_A0KL83 Hydrogenase-2 operon protein HybE n=2 Tax=Gammaproteobacteria RepID=A0KL83_AERHH Length = 182 Score = 177 bits (449), Expect = 1e-43, Method: Composition-based stats. Identities = 76/162 (46%), Positives = 103/162 (63%), Gaps = 2/162 (1%) Query: 2 TEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWM 61 +E +GF T+P + A +E IA++ M L F HP+MP+ + TLFEGQW GCV+TPWM Sbjct: 18 AQEFSGFATNPAPLLVAQYERIAQQEMQALPFYHPAMPIVA-ECTLFEGQWLGCVLTPWM 76 Query: 62 LSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIE 121 LS V+ PGPDQLWP+R S+++ LQLP G +TF VG L Q L+CSLMSP+ + + Sbjct: 77 LSVVVLPGPDQLWPVRGSSDRLALQLPCGNLTFMVGALPETGQLLACSLMSPIDPHLGAD 136 Query: 122 EGQRLTDDCARMILSLPVTNPDVP-HAGRRALLFGRRSGENA 162 EG+ L +M+LSLPV + + RR L GRR+ Sbjct: 137 EGRALVSSTLKMLLSLPVQQGEGGVNLSRRRLFSGRRTDAVG 178 >UniRef50_A4SLU9 Member of hyb operon n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SLU9_AERS4 Length = 160 Score = 175 bits (444), Expect = 4e-43, Method: Composition-based stats. Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 1/160 (0%) Query: 3 EEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWML 62 +E AGF T+P + A +E IAR M L F H +MP+ + LFE QW GCV+TPWML Sbjct: 2 QEFAGFATNPAPLLVAQYERIAREEMQGLPFYHATMPIVA-ECVLFEEQWLGCVLTPWML 60 Query: 63 SAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEE 122 S V+ PGPDQLWP+R+ S+++ LQLP G MTF VGEL Q L+CSLMSPL + E+ Sbjct: 61 SLVVLPGPDQLWPVRRSSDRLALQLPCGNMTFMVGELPETGQLLACSLMSPLDPHLGAEQ 120 Query: 123 GQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 G L +M+ SLP+ V R LFG R G+ A Sbjct: 121 GSSLVSSTLKMLHSLPLHQGAVGVDLGRRRLFGARRGQPA 160 >UniRef50_Q478N6 Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica RCB RepID=Q478N6_DECAR Length = 183 Score = 172 bits (437), Expect = 2e-42, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 10/167 (5%) Query: 4 EIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLS 63 P A ++A + + + MHD+ F++ ++ V F +EG W G VITPW L+ Sbjct: 17 PAVPRDDDPTAFLEAHYRHVWQTRMHDMPFVNAALGVEAVGFARYEGDWLGVVITPWFLN 76 Query: 64 AVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEG 123 V+ G QLW E+ L LP GTM F + + Y C L++P+++ + + Sbjct: 77 LVLVYGGGQLWGDIPAGERRYLNLPCGTMQFLADDDPDIGPYQYCPLIAPVTNLADMAQA 136 Query: 124 QRLTDDCARMILSLPVTNPDV---------PHAGRRALLFGRRSGEN 161 + + D + + LP P P RR F R +G+ Sbjct: 137 RVVAADALKTVFGLPAAEPAPDLPPVAEGKPAVSRRGF-FRRLAGKR 182 >UniRef50_Q21R11 Putative uncharacterized protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21R11_RHOFD Length = 165 Score = 169 bits (428), Expect = 3e-41, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M+ I SP V+AAF I + M D+ L+P++ V DF ++G W G V+TPW Sbjct: 1 MSPNI--HIVSPADAVEAAFSRIQQECMVDVPILNPALSVEAIDFQRWQGHWLGMVVTPW 58 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 +S ++ PG W +++ ++ P G F G + +Y SCSL SP+ S Sbjct: 59 CMSLLLLPGSIDNWVSTGENKRRFVRFPAGDFAFLGGHETELGEYQSCSLFSPMGKFSSQ 118 Query: 121 EEGQRLTDDCARMILSLPV---------TNPDVPHAGRRALL 153 E +L++P RR Sbjct: 119 SEATMTARASLVGLLTVPQPPQAVNKKDRAAGQTPVSRRNFF 160 >UniRef50_Q478M3 HupJ protein n=1 Tax=Dechloromonas aromatica RCB RepID=Q478M3_DECAR Length = 156 Score = 167 bits (423), Expect = 1e-40, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 62/149 (41%), Gaps = 3/149 (2%) Query: 8 FQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDF-TLFEGQWTGCVITPWMLSAVI 66 + T P ++ A F+ IAR MHD+ + + V F +G W G +ITPW L+ + Sbjct: 4 WTTDPSPELVAVFDNIARTRMHDVPICNGKLQVEAVGFQRTADGHWAGAMITPWALNLLR 63 Query: 67 FPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRL 126 P WP+ K P G FTV E + Y CSL SP S E + Sbjct: 64 LPAQVDGWPVLAACSKHDWHFPSGNYEFTVAEEASIGNYHLCSLFSPALEFESHEAARLT 123 Query: 127 TDDCARMILSLPVTNPDVP--HAGRRALL 153 + P+ PD A RRA L Sbjct: 124 ALAAVHALFGEPLVAPDAAAKPASRRAFL 152 >UniRef50_A6VNU5 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNU5_ACTSZ Length = 168 Score = 164 bits (416), Expect = 7e-40, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 5 IAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSA 64 + GF +P +Q E R +M L F ++P Y F L + QW G V+TPWMLS Sbjct: 17 VVGFSENPALLLQTEMER-TRPNMRSLPFFRENIPCYCPPFILLDNQWIGTVLTPWMLSL 75 Query: 65 VIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQ 124 VI PGP+Q W R + +K+G+ LPY T+ FTV +L+G+ YLS SL SPL+ ++ E+G Sbjct: 76 VILPGPNQEWETRPLGDKLGVALPYKTLMFTVSQLEGIPCYLSHSLASPLARKLTAEQGV 135 Query: 125 RLTDDCARMILSLPVTNPDVPHAGRRALLF 154 +L DDC +M LS P+ P P RR + Sbjct: 136 QLADDCLKMALSFPLNQPQ-PDLKRRNIFR 164 >UniRef50_B2IJ36 Rubredoxin n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJ36_BEII9 Length = 295 Score = 162 bits (410), Expect = 3e-39, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 35/195 (17%) Query: 3 EEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWML 62 + I A+++A F EI M L FL+ ++ + F EGQ G +ITPW + Sbjct: 97 DPIMALLRDWPARMEALFREIHAGQMRGLPFLNDALGIKAVGFRAHEGQMLGVLITPWFM 156 Query: 63 SAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDG--------------------V 102 + V+ PGP + W + K + P G FT G + Sbjct: 157 NLVLAPGPHEDWSVLTSGGKELIAFPSGVYEFTFVNRQGPSGKGSSGNGQTGNSKAGLEL 216 Query: 103 SQYLSCSLMSPLSHSMSIEEGQRLTDDCARMIL----SLPVTNPDVP-----------HA 147 + Y +CSL SP+S ++ + + + P P Sbjct: 217 TPYKACSLFSPMSDFTTMPQAIETAEAVLTALFDASLCPPRKEASEPEPVAKEEKEPFRP 276 Query: 148 GRRALLFGRRSGENA 162 RR+LLFG R+G++ Sbjct: 277 DRRSLLFGPRAGDHG 291 >UniRef50_B2JX94 Rubredoxin-type Fe(Cys)4 protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JX94_BURP8 Length = 226 Score = 159 bits (401), Expect = 4e-38, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 13/166 (7%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M + F +++ FE+IA+ M DL FL+ + V F ++ W G ++TPW Sbjct: 57 MAPTASSFSADLTHRIEGTFEQIAQTRMCDLPFLNSRLRVAAVAFRPWQSSWIGVLVTPW 116 Query: 61 MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI 120 ++ + P D +P + + LP G M F LD + ++ CSL SP Sbjct: 117 GINLLQLPKSDAPFPPTRADAVTEVALPGGIMPFMPARLDTLGEFRMCSLFSPARQFADQ 176 Query: 121 EEGQRLTDDCARMILSL-------------PVTNPDVPHAGRRALL 153 + R++ +P+ P RR L Sbjct: 177 ATALVTAWETMRLLFEPESVAQPKVGPDGSAQVHPERPDRFRRCLF 222 >UniRef50_Q03009 Probable rubredoxin hupJ n=8 Tax=Alphaproteobacteria RepID=HUPJ_RHOCA Length = 278 Score = 156 bits (394), Expect = 2e-37, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 4/149 (2%) Query: 10 TSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPG 69 + + + A F EI M D+ ++ ++ + F EG+ G +++PW ++ + P Sbjct: 89 DAQVSALVADFREIWHSKMRDVPLVNKALSIEAVGFRSHEGRGLGVLVSPWFMNLIQLPA 148 Query: 70 PDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDD 129 + W K L+ P G F + V Y +CSL + + + D Sbjct: 149 AGEDWSGLIPGVKEDLEFPSGLYEFIHNRREMVGGYKACSLYPTMGDFQTQMQAV----D 204 Query: 130 CARMILSLPVTNPDVPHAGRRALLFGRRS 158 AR ++ + R A + R+ Sbjct: 205 LARAVMIELFKAENRAETDRAAEIRASRT 233 >UniRef50_Q6LB97 HupJ n=1 Tax=Oligotropha carboxidovorans OM5 RepID=Q6LB97_OLICO Length = 195 Score = 154 bits (390), Expect = 7e-37, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 4/136 (2%) Query: 15 QVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLW 74 Q+ +F ++ M D F + S+ V F ++E + G ++ PW ++ V+ P D+ W Sbjct: 6 QLTESFRQVFNTKMRDTPFSNNSLNVEAIGFRIWENRIVGILMMPWCMNIVVLPATDEDW 65 Query: 75 PLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMI 134 ++ K P G F Y +CSL S ++ S + D AR Sbjct: 66 SQLRIGTKRNFAFPSGCYEFIFNNRPPAGGYFACSLFSSMAEFASQLQA----TDVARAA 121 Query: 135 LSLPVTNPDVPHAGRR 150 ++ ++ R Sbjct: 122 IAGLFDEGNLDEDTDR 137 >UniRef50_Q0A724 HupJ, contains rubredoxin domain n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A724_ALHEH Length = 153 Score = 151 bits (381), Expect = 9e-36, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 7/154 (4%) Query: 8 FQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIF 67 + T ++AAF + M +++ +P++ V F ++G+ G +++PW L+ ++ Sbjct: 6 WLTQQVRLLEAAFHRVQAEQMAEIALANPALTVEAVGFHRYQGRPFGALLSPWFLNLILM 65 Query: 68 PGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLT 127 PG + W + LP G F V G+ + +CS+MSP+ + + + Sbjct: 66 PGEGEDWEQLPERSEQHWALPAGVYLFHVCRAAGIGTFQACSIMSPVERVEDQDSFRMVA 125 Query: 128 DDCARMILSLPVTNPDVPHAGRRALLFGRRSGEN 161 + R + RRA+L GR E Sbjct: 126 EAALRAVCRPSGH-------SRRAVLTGRFDDEG 152 >UniRef50_A0LAK5 Putative uncharacterized protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAK5_MAGSM Length = 215 Score = 146 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 2/141 (1%) Query: 8 FQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIF 67 S Q++ F I + M + L+P + V F ++ W G VITPW+++ V Sbjct: 2 DAQSLMQQLETTFTAIHKNQMQGIPLLNPMIRVEAVGFQRWQVGWLGVVITPWLMNLVYI 61 Query: 68 PGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLT 127 P + +K + P + T V + GV + S S+ SP+ + + Sbjct: 62 PDDASALEAAPLGDKQVHRFPERSYTMLVNDFAGVGRCWSFSIHSPMGEFPAHDAAVARA 121 Query: 128 DDCARMILSLPVTNPDVPHAG 148 + ++L+ + P Sbjct: 122 EAFLALLLTP--QQGEEPQDD 140 >UniRef50_A1VNP7 HupJ, contains rubredoxin domain n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VNP7_POLNA Length = 180 Score = 144 bits (364), Expect = 7e-34, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 60/160 (37%), Gaps = 11/160 (6%) Query: 13 KAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLF-------EGQWTGCVITPWMLSAV 65 + A ++ IA M + L+P++ V F L E G +ITPW ++ V Sbjct: 13 VKALAALYQHIASTRMQGIPLLNPAVQVEAVGFELVKPEGNEPETTGIGVLITPWFMNLV 72 Query: 66 IFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQR 125 P +L ++V K+ + F DG Y +CSL SP+ + + Sbjct: 73 WLP-LRRLDLAKQVGSKVPRYVGRECFEFIAAHEDGFGSYEACSLFSPVFEFENHQAAVA 131 Query: 126 LTD---DCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 D R S RRA LFGR S A Sbjct: 132 TAQAVLDTLRQPASAAAQAVLPQAPARRAFLFGRSSAVAA 171 >UniRef50_Q2BN46 HupJ, contains rubredoxin domain n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN46_9GAMM Length = 184 Score = 144 bits (364), Expect = 8e-34, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 4/138 (2%) Query: 24 ARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKI 83 A M DL + ++ + + E + +ITPW ++ ++ P K Sbjct: 16 ADSRMQDLPVYNKALNIELVGAKALETGFVAVLITPWCMNLILMPEQADKTERLAAGSKK 75 Query: 84 GLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPD 143 + P G F ELDGVS +LSCSL SP+S + + + + Sbjct: 76 LIGFPSGQYEFIQNELDGVSGFLSCSLFSPMSQFVDQAGAVETAEQVMLQLF----KVEN 131 Query: 144 VPHAGRRALLFGRRSGEN 161 V R+ L +R Sbjct: 132 VALTDRQLALNAQRDENR 149 >UniRef50_D2LGL4 Rubredoxin n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL4_RHOVA Length = 177 Score = 144 bits (363), Expect = 9e-34, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 67/170 (39%), Gaps = 10/170 (5%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M+E A + +++A FE I M D+ L+P + V G W ++TPW Sbjct: 1 MSEAQADEAAAVARRLEAVFERIHATRMADVPLLNPRLAVAAVGPRDVGGLWLAVLVTPW 60 Query: 61 MLSAVIFPGPDQL---WPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHS 117 ++A++ P + W KI LP G F G G+ Y CSL SP++ Sbjct: 61 FINAMLLPKTAEDVESWGEAPSGAKISHALPAGMFEFIAGGEAGLGPYRMCSLFSPVTQF 120 Query: 118 MSIEEGQRLTDDCARMILSLPVTNPDV------PHAGRRALLFGRRSGEN 161 + + A L +PD P RR L+FGR Sbjct: 121 EDQ-NAALIAAEAALAALLDSGHHPDAEAARRKPQLSRRGLIFGRAPESG 169 >UniRef50_A0P1N2 Putative uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1N2_9RHOB Length = 196 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 1/139 (0%) Query: 6 AGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAV 65 T+ +++ F ++ M + L+ + V + G W G +ITPW ++ V Sbjct: 1 MSNATAITDRLETCFRQVHAERMSGIPILNEKLGVRAVGIVPWNGFWFGALITPWFMNLV 60 Query: 66 IFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQR 125 + + + + EK P G F G D + + CSL SP+ +E + Sbjct: 61 LI-AQEPDQNIIRSGEKRLFVFPAGRFEFIRGHEDHLGAFWMCSLFSPVFEFEDMETAEA 119 Query: 126 LTDDCARMILSLPVTNPDV 144 ++ + D Sbjct: 120 TAIAALAGLMEGAQEDEDR 138 >UniRef50_Q1LNV3 HupJ, contains rubredoxin domain n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LNV3_RALME Length = 158 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 6/158 (3%) Query: 10 TSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLF---EGQWTGCVITPWMLSAVI 66 A + + + ++ + M + L+P++ V F E G +ITPW +S V Sbjct: 2 EQRVAALVSFYRQVETKRMQGIPILNPALSVEAVGFRPADADETVSEGVLITPWFMSLVR 61 Query: 67 FPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRL 126 P Q R V K + F + + +C+L SP++ S ++ + Sbjct: 62 LPLAVQDHGGR-VGRKRVMAFGKERFDFIGAHDPDIGFHEACALFSPMADFRSQDQARDT 120 Query: 127 TDDCARMILSLPVTNPDVPH--AGRRALLFGRRSGENA 162 + P V RRA R +G + Sbjct: 121 ALAVLDQLRPPPPAAKPVAETIPARRAFFLARGAGVRS 158 >UniRef50_P48341 Hydrogenase expression/formation protein hupJ n=3 Tax=Bradyrhizobium RepID=HUPJ_BRAJA Length = 169 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 10/168 (5%) Query: 2 TEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWM 61 + + ++ EI R+M DL + ++ V F F G G ++TPW Sbjct: 5 APNPDADAVAWGDLLAGSYREIGERAMRDLPIYNDALGVEAVGFRAFNGTIVGIMVTPWF 64 Query: 62 LSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIE 121 ++ V+ P ++ P G + FT+ E+ + + SCSL SP+ ++ Sbjct: 65 MNVVL---PASAVAQATSGATARIRFPAGDIEFTISEVGQIGRIASCSLFSPMFQFADMD 121 Query: 122 EGQRLTDDCARMILSLP-------VTNPDVPHAGRRALLFGRRSGENA 162 + + ++ P RR L G + Sbjct: 122 AARATAEAALAELMLPADSEEAVRRREPATTPIDRRNFLRGTLTERRG 169 >UniRef50_C7I140 Putative uncharacterized protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I140_THIIN Length = 168 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 6 AGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAV 65 A T+ ++ A+ EI M L ++P++ V V ++G G ++TPW ++ + Sbjct: 5 ADDLTAIGRTLEQAYSEIQHTRMRGLPIVNPALQVAVVGLRAWDGLCIGVLVTPWCMNLL 64 Query: 66 I--FPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEG 123 PG L P L LP G + V YLS SL SP+ S E Sbjct: 65 ALSLPGGRTLLPA-TAGTIRTLDLPAGRYDLLAAHMPQVGHYLSGSLYSPMDAFTSQHEA 123 Query: 124 QRLTDDCARMILSLPVTNPDVPHA---------GRRALLFGRRS 158 ++ P P RR+ LF R + Sbjct: 124 VAAARAALDLLFDAGAQAPAEPVPSGAVATDVASRRSFLFRRPA 167 >UniRef50_P31913 Protein hoxT n=1 Tax=Ralstonia eutropha H16 RepID=HOXT_RALEH Length = 179 Score = 141 bits (355), Expect = 8e-33, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 12/149 (8%) Query: 9 QTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQW------TGCVITPWML 62 + ++ AF IA M D+ ++ ++ V F G +ITPW + Sbjct: 10 EVDRVRHLEEAFCCIAATRMADIPVVNRALSVEALGFEQCAESAGGSDGEMGILITPWFM 69 Query: 63 SAVIFPG-----PDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHS 117 + + ++ V + + F Y CSL SP+ Sbjct: 70 NLIWLAPYGPCLGERDASTLPVGKTCMRRFGSHDFEFIGASEPQFGPYQFCSLFSPMFEF 129 Query: 118 MSIEEGQRLTDDCARMILSLPVTNPDVPH 146 + + + R++ + P P P Sbjct: 130 ANQASARATATEVLRLLRASP-DAPLPPT 157 >UniRef50_P28152 Hydrogenase expression/formation protein hupJ n=1 Tax=Rhizobium leguminosarum bv. viciae RepID=HUPJ_RHILV Length = 174 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 4/155 (2%) Query: 11 SPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGP 70 + Q++ + EI +M D+ +P++ V + F + G+ G V TPW ++ V P Sbjct: 16 ALGLQLEMRYREIYATAMADVPICNPALGVAATGFRTYGGRALGIVTTPWFMNLVAADLP 75 Query: 71 DQ-LWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDD 129 D + + LP G + F G+LD + + SCSL SP+ ++E ++ Sbjct: 76 DGVPTGPAATGTTLRVNLPAGEVEFIAGQLDAIGRIDSCSLFSPVFEFATMEAALETAEE 135 Query: 130 CARMILSLP---VTNPDVPHAGRRALLFGRRSGEN 161 R RR LL G G Sbjct: 136 AVRAFFDPATLEPPPAPPAAVNRRDLLRGHFRGRE 170 >UniRef50_A4YNU3 Hydrogenase expression/formation protein hupJ n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YNU3_BRASO Length = 165 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 17/172 (9%) Query: 1 MTEEIAGFQTS---PKAQ---VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTG 54 M+ AG T P A + + EI R+M +L H ++ V FT G+ G Sbjct: 1 MSAVAAGQGTDQLTPAAWGERLAGIYREIGDRAMRELPIYHDALAVDAIGFTSVVGRTIG 60 Query: 55 CVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPL 114 ++TPW ++ V D V I + LP G+ F + ++ GV + SCSL SP+ Sbjct: 61 ILVTPWFMNVVTPAEGD-------VGSTIDVALPAGSFGFAISDVAGVGRIASCSLFSPM 113 Query: 115 SHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAG----RRALLFGRRSGENA 162 S + + + +L+ P D RRA L G S A Sbjct: 114 SEFEDMAAARVAAEAALAALLTAPEDEADTARVSRGIERRAFLRGTLSESRA 165 >UniRef50_A2SJN3 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SJN3_METPP Length = 230 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 13/159 (8%) Query: 16 VQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLF------------EGQWTGCVITPWMLS 63 + F I R M + L+P++ V F + + G ++TPW ++ Sbjct: 71 LVDLFRGIERDRMAGVPVLNPALQVEAVGFEPAFDPAIADPESGGDVEAVGILVTPWFMN 130 Query: 64 AVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEG 123 V P + + V + F G Y +CSL SP+ + Sbjct: 131 LVTMPLERRDD-VACVGVSRTRPVGSENFDFIGGHEPAFGSYAACSLFSPMFEFVDQAAA 189 Query: 124 QRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 + P RR+ L GR S A Sbjct: 190 VATARAVLTTLRVPVAAVEQTPSPARRSFLLGRSSATGA 228 >UniRef50_P95501 HupJ protein n=1 Tax=Pseudomonas hydrogenovora RepID=P95501_9PSED Length = 197 Score = 135 bits (341), Expect = 3e-31, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 62/188 (32%), Gaps = 28/188 (14%) Query: 3 EEIAGFQTSP-----KAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEG------Q 51 ++ G P A ++ AF IA M L L+P++ V F G Sbjct: 7 QKAGGDAADPQLAARVAVLEHAFTTIAHERMAGLPVLNPNLSVEAIGFERVAGAADEAGH 66 Query: 52 WTGCVITPWMLSAVIFP-------GPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQ 104 G + TPW +S V P D P + T F G+ Sbjct: 67 ALGILATPWFMSLVWLPLSPSVAGRADGGVPAVSPDQVGPRTFGEHTFDFMPNWQSGLGA 126 Query: 105 YLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPH----------AGRRALLF 154 + SCSL+SP+ S + + + + R++ + P RR LF Sbjct: 127 FESCSLVSPMDEFASQADVRAIAVEILRVLRTARDRQDVSPQRTPARMAGAPLDRRRFLF 186 Query: 155 GRRSGENA 162 G S Sbjct: 187 GGLSAAEG 194 >UniRef50_C7RPY8 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RPY8_9PROT Length = 210 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 59/194 (30%), Gaps = 37/194 (19%) Query: 2 TEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFE------------ 49 P ++ ++ I SM DL F++P++ V F ++ Sbjct: 15 PSPAQPIAVDPTPLLETMYQRIWATSMRDLPFINPALSVEAVGFRRWQSLTASPLAEDNS 74 Query: 50 ----------------GQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMT 93 G W G ++TPW ++ + PG LW R + ++ P G + Sbjct: 75 PQPSGDPAGRSRPSAQGDWVGALVTPWFINLFVLPGGGNLWSDRPAGARCHIEFPIGPLE 134 Query: 94 FTVGEL--DGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLP-------VTNPDV 144 F + Y C L +P S + + S P + Sbjct: 135 FIADHDGSAEIPAYQYCPLFAPPGQFASQTAARAAALAALAALFSNPSPPDTEAPKSAVA 194 Query: 145 PHAGRRALLFGRRS 158 R F R + Sbjct: 195 KTGASRRAFFRRIA 208 >UniRef50_A4JRG1 HupJ, contains rubredoxin domain n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JRG1_BURVG Length = 170 Score = 135 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 9/168 (5%) Query: 2 TEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLF------EGQWTGC 55 G + A + +A +M + +HP + V F + G G Sbjct: 3 ASLPGGPSDPRIGALVAHYTTVAATTMLGMPVVHPGLRVEAVAFGPYPARGDASGDLLGI 62 Query: 56 VITPWMLSAVIFPGPDQLWPLRKV-SEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPL 114 ++TPW ++ V PG + + ++ + + + CSL SP+ Sbjct: 63 LVTPWFMNLVWLPGGNSAAHPCPSPGQLAARRVGAVEFDWIGAHVPQAGAHACCSLFSPM 122 Query: 115 SHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA 162 + S P P RR L R + A Sbjct: 123 FDFSDHASAVATARAVLAQLRSAAADAP--PRTSRREFLLRRPATREA 168 >UniRef50_P30781 Hydrogenase expression/formation protein hoxT n=3 Tax=Azotobacter RepID=HOXT_AZOVI Length = 153 Score = 135 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 5/150 (3%) Query: 13 KAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEG-QWTGCVITPWMLSAVIFPGPD 71 + A +A M L +P++ V + + EG G +ITPW ++ P D Sbjct: 3 GREAIEAHYRVAGARMAGLPVYNPALTVELLGWRAVEGVGALGVLITPWCMNLFWQPPAD 62 Query: 72 QLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCA 131 P E+ L LP G T+ E + + ++ S SL SP+ E + + + Sbjct: 63 AELPA--SGERAVLSLPSGDYECTLHEDERLGRHASASLCSPMQDFPGQAEARAMAGEVL 120 Query: 132 RMILSLPVTNPDVPHAG--RRALLFGRRSG 159 R+IL++P P+ +G R LF R G Sbjct: 121 RLILAVPEAGPEPSRSGLLSRRALFRRALG 150 >UniRef50_A1KC57 Probable Hydrogenase expression/formation protein n=1 Tax=Azoarcus sp. BH72 RepID=A1KC57_AZOSB Length = 188 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 60/161 (37%), Gaps = 18/161 (11%) Query: 19 AFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRK 78 F+ IAR M L +P++ V V F+G+W G ++TPW +S V+ PG + Sbjct: 28 CFQHIARTRMAGLPICNPALGVAVPALLPFQGEWLGALVTPWAISLVLLPGEGTRFRAIG 87 Query: 79 VSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI------------------ 120 V + P G +F + G+ Y +CSL SP+ Sbjct: 88 VGDSQDWDFPSGRYSFLGHQEAGLGAYQTCSLASPVFEFADQAAAETFALAALEALLRNE 147 Query: 121 EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGEN 161 E+G AR L RRA L G G Sbjct: 148 EDGGAARVHDAREAARLAGLPAAAAPVSRRAFLRGALFGGR 188 >UniRef50_Q2W3V9 Hydrogenase expression/formation protein hupT n=3 Tax=Magnetospirillum RepID=Q2W3V9_MAGSA Length = 157 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 1/144 (0%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M + ++ + ++ + F I M DL +P++ V F ++G G ++TPW Sbjct: 1 MADPLSPADQTRIRELVSVFARIGEERMKDLGLYNPALQVEAVGFRQWQGWLAGILVTPW 60 Query: 61 MLSAVIFPGPD-QLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMS 119 ++ ++ PG D + + + + LP G + F VGE++ V YLS S+ SP+ Sbjct: 61 FMNFMLLPGSDTENLAGVEPGSRRRIDLPKGQVVFVVGEVEEVGPYLSHSIHSPMGQFPD 120 Query: 120 IEEGQRLTDDCARMILSLPVTNPD 143 P P Sbjct: 121 HASASTTAWAAVGPYFQEPGEEPQ 144 >UniRef50_B3QGV5 HupJ protein n=6 Tax=Rhodopseudomonas palustris RepID=B3QGV5_RHOPT Length = 174 Score = 127 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 11/144 (7%) Query: 28 MHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQL 87 M DL +P++ V F + G ++TPW ++ V P D R E + L Sbjct: 31 MRDLPVFNPALDVAAIGFRALDDHAFGVIVTPWFMNLVRLP-LDPATAGRSQGEVVTRVL 89 Query: 88 PYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSL--------PV 139 P G + FT+G+LDG+ + SCSL SP+ + + +L P Sbjct: 90 PVGALEFTIGQLDGIGRIESCSLFSPMFDFADQSTAEAAAEAALAAVLKPEQVADETSPS 149 Query: 140 TNPD--VPHAGRRALLFGRRSGEN 161 P RR LL G Sbjct: 150 QAPSKMATTLDRRGLLRGAWMERR 173 >UniRef50_C5S8Z5 Putative uncharacterized protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S8Z5_CHRVI Length = 186 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 17/178 (9%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 + E + + A V A E + R ++ L+ ++PV V E V+TPW Sbjct: 9 LCSEELDEEQALSAAVIAIHERLLRETLAGDPMLNLALPVEVRALRRVEDWRVLLVLTPW 68 Query: 61 MLSAVIFP------GPDQLWPLRK--------VSEKIGLQLPYGTMTFTVGELDGVSQYL 106 ML+ ++FP + W + + ++G L + +G D + YL Sbjct: 69 MLARLLFPDRPPPLALPEGWSAAERADAEYLVLGPRLGFALFGQSQQAHLGYHDRLGHYL 128 Query: 107 SCSLMSPLSHSMSIEEGQRLTDDCARMI---LSLPVTNPDVPHAGRRALLFGRRSGEN 161 L + + + R+ + + + R LF R E Sbjct: 129 LQPLCLNMEPYRDADAVFEHWSEVIRVRDENMEAARRDCPMQKEISRRELFRRLKPER 186 >UniRef50_B5EKX4 Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrooxidans ATCC 53993 RepID=B5EKX4_ACIF5 Length = 177 Score = 58.1 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 50/169 (29%), Gaps = 14/169 (8%) Query: 1 MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW 60 M ++ + + ++ F +R + +HP + V + D + + ++TP Sbjct: 1 MNWQLVADRDNMAQTLEKVFAGWHQRCFANSPNVHPGLSVEIRDLQEVQDWYLAYLLTPI 60 Query: 61 MLSAVIFP------GPDQLWPLRK--------VSEKIGLQLPYGTMTFTVGELDGVSQYL 106 L + P + W + +GL++P + L + +L Sbjct: 61 ALYRLAMPLRVPDIPLPEGWSAAARVDQPCTGLGPALGLKIPGVLGQGHLQYLPEIGHFL 120 Query: 107 SCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFG 155 L+ L + + + RR L Sbjct: 121 WQPLVQNLRRYPDAAAVFAAWEGVIDHRRKTRASMQEQQRCDRRDFLRR 169 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.139 0.410 Lambda K H 0.267 0.0428 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 971,269,045 Number of Sequences: 3077464 Number of extensions: 38973210 Number of successful extensions: 105451 Number of sequences better than 1.0e-01: 43 Number of HSP's better than 0.1 without gapping: 100 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 105241 Number of HSP's gapped (non-prelim): 118 length of query: 162 length of database: 1,040,396,356 effective HSP length: 118 effective length of query: 44 effective length of database: 677,255,604 effective search space: 29799246576 effective search space used: 29799246576 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 88 (38.4 bits)