BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (222 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P30843 Transcriptional regulatory protein basR n=126 Ta... 451 e-126 UniRef50_C6CH89 Two component transcriptional regulator, winged ... 289 4e-77 UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria... 203 4e-51 UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax... 193 4e-48 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 192 6e-48 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 192 9e-48 UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammapro... 191 2e-47 UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax... 191 2e-47 UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=... 185 9e-46 UniRef50_B3PG57 Response regulator receiver domain protein n=5 T... 184 2e-45 UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria R... 181 1e-44 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 181 2e-44 UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gamma... 180 2e-44 UniRef50_Q1H1R2 Two component transcriptional regulator, winged ... 180 3e-44 UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydroba... 180 3e-44 UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged ... 180 4e-44 UniRef50_A6T2K6 Two-component response regulator n=20 Tax=Proteo... 177 2e-43 UniRef50_B2JHN0 Two component transcriptional regulator, winged ... 176 4e-43 UniRef50_B4SPK8 Two component transcriptional regulator, winged ... 175 9e-43 UniRef50_C1TR79 Response regulator with CheY-like receiver domai... 174 2e-42 UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellula... 174 3e-42 UniRef50_C3NYL4 DNA-binding response regulator n=36 Tax=Vibriona... 173 4e-42 UniRef50_A2SKN3 Two component transcriptional regulator, winged ... 172 7e-42 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 171 2e-41 UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Fra... 170 4e-41 UniRef50_B7S3C0 Response regulator receiver domain protein n=1 T... 170 4e-41 UniRef50_B2UJM1 Two component transcriptional regulator, winged ... 169 8e-41 UniRef50_B9TDT4 Two-component system sensor histidine kinase/res... 169 8e-41 UniRef50_Q21TS4 Two component transcriptional regulator, winged ... 168 1e-40 UniRef50_B6QYV6 DNA-binding response regulator n=1 Tax=Pseudovib... 168 2e-40 UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellula... 167 2e-40 UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=... 167 2e-40 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 166 4e-40 UniRef50_Q026B5 Two component heavy metal response transcription... 166 4e-40 UniRef50_A7IE82 Two component transcriptional regulator, winged ... 166 5e-40 UniRef50_A1TXC3 Two component transcriptional regulator, winged ... 166 7e-40 UniRef50_B8IU63 Two component transcriptional regulator, winged ... 165 8e-40 UniRef50_A5WDA5 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_A9BVB6 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_UPI00017468BB two component transcriptional regulator, ... 164 2e-39 UniRef50_B2TDT5 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 164 2e-39 UniRef50_B2HUW9 Response regulator consisting of a CheY-like rec... 164 3e-39 UniRef50_P22104 Transcriptional regulatory protein tctD n=145 Ta... 163 3e-39 UniRef50_A9I4J2 Two component response regulator n=11 Tax=Burkho... 163 3e-39 UniRef50_A4Y6W9 Two component transcriptional regulator, winged ... 163 4e-39 UniRef50_Q6FA81 Putative two-component response regulator n=1 Ta... 163 4e-39 UniRef50_A9BTX9 Two component transcriptional regulator, winged ... 162 6e-39 UniRef50_Q2BR69 Two component Transcriptional regulator, Winged ... 162 6e-39 UniRef50_Q480M1 Response regulator n=1 Tax=Colwellia psychreryth... 162 8e-39 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 161 1e-38 UniRef50_Q2W278 Response regulator consisting of a CheY-like rec... 160 3e-38 UniRef50_A9BQG9 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_C5TCA4 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 159 4e-38 UniRef50_C9XWL0 Transcriptional regulatory protein qseB n=1 Tax=... 159 5e-38 UniRef50_C1ZD82 Response regulator with CheY-like receiver domai... 159 6e-38 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 159 7e-38 UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter... 158 1e-37 UniRef50_Q8GP20 Swarming motility regulation protein rssB n=14 T... 158 1e-37 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 158 1e-37 UniRef50_Q0VPT5 DNA-binding heavy metal response regulator, puta... 158 2e-37 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 157 2e-37 UniRef50_A4JRJ8 Two component transcriptional regulator, winged ... 157 2e-37 UniRef50_A9IK50 Transcriptional regulatory protein n=7 Tax=Prote... 157 2e-37 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 157 2e-37 UniRef50_Q5QUA5 Response regulator (CheY, wHTH domains) n=1 Tax=... 157 3e-37 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_B9CM45 DNA-binding response regulator n=1 Tax=Atopobium... 156 4e-37 UniRef50_A1W7A8 Two component transcriptional regulator, winged ... 156 5e-37 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 155 7e-37 UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acineto... 155 9e-37 UniRef50_Q20WN2 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_A5VCP5 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_A0KWE7 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_Q47EV7 Response regulator receiver:Transcriptional regu... 155 1e-36 UniRef50_Q20YF2 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaprot... 154 3e-36 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 153 3e-36 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 153 3e-36 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 153 4e-36 UniRef50_Q1QIC0 Two component transcriptional regulator, winged ... 152 7e-36 UniRef50_A3SUZ3 Two component transcriptional regulator, winged ... 152 7e-36 UniRef50_A6W2Y0 Two component transcriptional regulator, winged ... 152 9e-36 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 152 9e-36 UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bact... 152 9e-36 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 151 2e-35 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 151 2e-35 UniRef50_C6NUN9 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 150 3e-35 UniRef50_C6RM27 Transcriptional regulatory protein QseB n=1 Tax=... 150 4e-35 UniRef50_B2TEA5 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_C1SIE7 Response regulator with CheY-like receiver domai... 149 5e-35 UniRef50_Q7P0H4 Probable two-component system response regulator... 149 5e-35 UniRef50_Q89NT7 Two-component response regulator n=1 Tax=Bradyrh... 149 5e-35 UniRef50_Q1D1V9 DNA-binding response regulator n=1 Tax=Myxococcu... 149 5e-35 UniRef50_C6BHC0 Two component transcriptional regulator, winged ... 149 5e-35 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 149 5e-35 UniRef50_Q21ZH1 Two component transcriptional regulator, winged ... 149 6e-35 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 149 6e-35 UniRef50_C6XSY6 Response regulator receiver n=1 Tax=Pedobacter h... 149 6e-35 UniRef50_B9MHH2 Two component transcriptional regulator, winged ... 149 7e-35 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 149 9e-35 UniRef50_Q7M9V5 TRANSCRIPTIONAL ACTIVATOR PROTEIN COPR n=1 Tax=W... 148 1e-34 UniRef50_B2V5Y8 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_B2V7S5 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_Q7CWZ7 Two component response regulator n=2 Tax=Alphapr... 147 2e-34 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_B9JKK7 Two-component response regulator protein n=1 Tax... 147 3e-34 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 147 3e-34 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 147 3e-34 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_A7VHB9 Putative uncharacterized protein n=5 Tax=Firmicu... 147 3e-34 UniRef50_C9B4F3 Two component transcriptional regulator n=2 Tax=... 147 3e-34 UniRef50_Q92V41 Putative two-component response regulator protei... 146 4e-34 UniRef50_C1DUD1 Transcriptional activator protein IrlR n=1 Tax=S... 146 5e-34 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 146 6e-34 UniRef50_C4ZLE7 Two component transcriptional regulator, winged ... 146 6e-34 UniRef50_Q3ID21 DNA-binding response regulator of two-component ... 145 8e-34 UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobi... 145 9e-34 UniRef50_B8G869 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_B4SNE1 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 145 1e-33 UniRef50_Q2RPG3 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_Q2P6R9 Two-component system regulatory protein n=28 Tax... 145 1e-33 UniRef50_C8SKU4 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A8F0H8 Transcriptional activator protein CzcR n=24 Tax=... 144 2e-33 UniRef50_UPI0001745DFF Response regulator consisting of a CheY-l... 144 2e-33 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 144 2e-33 UniRef50_B0C620 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 144 3e-33 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 144 3e-33 UniRef50_Q6MHZ0 Two component response regulator n=1 Tax=Bdellov... 144 3e-33 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 144 3e-33 UniRef50_C9YE22 Response regulator mprA n=1 Tax=Curvibacter puta... 143 3e-33 UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firm... 143 3e-33 UniRef50_Q6AQP4 Probable two-component system response regulator... 143 3e-33 UniRef50_A6EUI4 DNA-binding heavy metal response regulator, puta... 143 4e-33 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 143 4e-33 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 143 5e-33 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 143 5e-33 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 142 7e-33 UniRef50_A5F0A5 Transcriptional regulator n=77 Tax=Proteobacteri... 142 7e-33 UniRef50_Q1LIY7 Two component transcriptional regulator, winged ... 142 7e-33 UniRef50_A8UXR4 Two component transcriptional regulator, winged ... 142 7e-33 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 142 8e-33 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 142 8e-33 UniRef50_B4EVF9 Two-component response regulator n=19 Tax=Entero... 142 8e-33 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 142 1e-32 UniRef50_UPI00016C05FB hypothetical protein Epulo_07020 n=1 Tax=... 142 1e-32 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_Q2L1Q6 Two-component response regulator n=3 Tax=Proteob... 142 1e-32 UniRef50_Q3ATG7 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_C4I5X0 DNA-binding response regulator n=78 Tax=Bacteria... 142 1e-32 UniRef50_B0ABP9 Putative uncharacterized protein n=1 Tax=Clostri... 141 1e-32 UniRef50_B5WI25 Two component transcriptional regulator, winged ... 141 1e-32 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 141 1e-32 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 141 1e-32 UniRef50_A6AUV7 Response regulator receiver domain protein n=2 T... 141 2e-32 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 141 2e-32 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 141 2e-32 UniRef50_D1ST94 Two component transcriptional regulator, winged ... 141 2e-32 UniRef50_A6WZ81 Cell cycle response regulator ctrA n=152 Tax=cel... 140 2e-32 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 140 2e-32 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 140 2e-32 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 140 2e-32 UniRef50_C3X1J5 Response regulator receiver:Transcriptional regu... 140 3e-32 UniRef50_B3PFT8 AbfR arabinofuranosidase two component system re... 140 3e-32 UniRef50_C7RI96 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 140 3e-32 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 140 3e-32 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 140 3e-32 UniRef50_B5JZG0 Two-component transcriptional regulator, winged ... 140 4e-32 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 140 5e-32 UniRef50_C1XYD1 Response regulator with CheY-like receiver domai... 139 5e-32 UniRef50_UPI00016C506D two component transcriptional regulator, ... 139 5e-32 UniRef50_A5WEA6 Two component transcriptional regulator, winged ... 139 6e-32 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 139 7e-32 UniRef50_A6LDA1 Two-component system response regulator n=39 Tax... 139 7e-32 UniRef50_A5FGB3 Two component transcriptional regulator, winged ... 139 7e-32 UniRef50_Q0VRB9 DNA-binding heavy metal response regulator, puta... 139 8e-32 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 139 9e-32 UniRef50_C1XFY4 Two component transcriptional regulator, winged ... 139 9e-32 UniRef50_D2PKG5 Two component transcriptional regulator, winged ... 138 1e-31 UniRef50_O66657 Transcriptional regulator (PhoB-like) n=2 Tax=Aq... 138 1e-31 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 138 1e-31 UniRef50_Q04HD6 DNA-binding response regulator, OmpR family (Rec... 138 1e-31 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 138 1e-31 UniRef50_C7MLF5 Response regulator with CheY-like receiver domai... 138 1e-31 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 138 1e-31 UniRef50_A1RNU1 Two component transcriptional regulator, winged ... 138 2e-31 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 138 2e-31 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 137 2e-31 UniRef50_C7RF78 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_Q31JS2 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_C6WCC5 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_B4U7G0 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_A6BKE3 Putative uncharacterized protein n=3 Tax=Clostri... 137 3e-31 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 137 3e-31 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 137 3e-31 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 137 3e-31 UniRef50_D1BX45 Two component transcriptional regulator, winged ... 137 3e-31 UniRef50_A7GB96 DNA-binding response regulator n=16 Tax=Bacteria... 137 3e-31 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 137 3e-31 UniRef50_A6Q965 Two-component response regulator n=1 Tax=Sulfuro... 137 3e-31 UniRef50_B9P733 Predicted protein n=13 Tax=cellular organisms Re... 137 3e-31 UniRef50_B9ZMZ7 Two component transcriptional regulator, winged ... 137 4e-31 UniRef50_A5VAJ0 Two component transcriptional regulator, winged ... 137 4e-31 UniRef50_Q03TF3 DNA-binding response regulator, OmpR family (Rec... 136 4e-31 UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermom... 136 4e-31 UniRef50_B4U2R0 TCS transcriptional regulatory protein ciaR n=9 ... 136 4e-31 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 136 5e-31 UniRef50_C7Q2J4 Two component transcriptional regulator, winged ... 136 5e-31 UniRef50_Q0ICD5 Two-component response regulator n=5 Tax=Synecho... 136 5e-31 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 136 6e-31 UniRef50_Q020N6 Two component transcriptional regulator, winged ... 136 6e-31 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 136 6e-31 UniRef50_C3WHY2 Two-component response regulator n=8 Tax=Fusobac... 136 6e-31 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 136 6e-31 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 136 6e-31 UniRef50_B9Y5E4 Putative uncharacterized protein n=1 Tax=Holdema... 136 6e-31 UniRef50_A3K9L3 Two-component system regulatory protein n=1 Tax=... 136 6e-31 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 136 7e-31 UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC... 136 7e-31 UniRef50_Q2SKY7 Response regulator consisting of a CheY-like rec... 135 7e-31 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 135 7e-31 UniRef50_A9AUH9 Two component transcriptional regulator, winged ... 135 7e-31 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 135 7e-31 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 135 8e-31 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 135 9e-31 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 135 9e-31 UniRef50_UPI0001AEC3E2 two component transcriptional regulator n... 135 1e-30 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 135 1e-30 UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob... 135 1e-30 UniRef50_B7KAD7 Multi-component transcriptional regulator, winge... 135 1e-30 UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional r... 135 1e-30 UniRef50_D0MIF5 Two component transcriptional regulator, winged ... 135 1e-30 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 135 1e-30 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 135 1e-30 UniRef50_A4CE30 Probable two-component response regulator transc... 135 1e-30 UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococ... 135 1e-30 UniRef50_D1U362 Two component transcriptional regulator, winged ... 135 1e-30 UniRef50_Q5SJK6 Response regulator n=6 Tax=Deinococci RepID=Q5SJ... 135 1e-30 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 135 1e-30 >UniRef50_P30843 Transcriptional regulatory protein basR n=126 Tax=Gammaproteobacteria RepID=BASR_ECOLI Length = 222 Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/222 (100%), Positives = 222/222 (100%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 >UniRef50_C6CH89 Two component transcriptional regulator, winged helix family n=2 Tax=Dickeya RepID=C6CH89_DICZE Length = 232 Score = 289 bits (740), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 131/222 (59%), Positives = 177/222 (79%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+LIVEDD LL +GL+ A + EGY CD +TA+ A+ + + HYSLVVLDLGLPDEDGL Sbjct: 1 MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R+ Y PVLILTARDT+ D++ GLDVGADDY++KPFAL E AR+RAL+RRH Sbjct: 61 TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +S + V N+TL++ +QV + + ++LTPKE+A+LSRL+LKAGS VHRE+L+ D+Y+ Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 WD++PS+N+LEVHIHNLR K+GK RI+T+RGFGY+L ++++ Sbjct: 181 WDDDPSSNSLEVHIHNLRQKIGKNRIKTLRGFGYLLTKDDQS 222 >UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria RepID=Q2T4E0_BURTA Length = 255 Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 110/216 (50%), Positives = 146/216 (67%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L+ GL + EG+A D V A +L Y L++LDLGLPD+DGL Sbjct: 36 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 95 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA +R++ LPV+++TARD L D+IAGLD GADDYLVKPFALEEL ARIRA+ RR Sbjct: 96 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 155 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + ++ L VG L L+ R QVW GG+E+ L+PKE+ LL LM + G+ + RE +Y+ Sbjct: 156 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 215 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W E +N ++VHIHNLR K+G I TVRG GY + Sbjct: 216 WGEEIESNAVQVHIHNLRKKLGHDTILTVRGVGYRI 251 >UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax=Proteobacteria RepID=QSEB_ECOLI Length = 219 Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 100/216 (46%), Positives = 137/216 (63%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD L+ G+ G++ D T R +++L + Y V+LDL LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+K PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR N Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q +EL GN+ L+ G+R + GE L L PKE+ALL LM AG + R+++ +Y Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 WD E ++N +EVH+H+LR K+G IRTV G GY L Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 192 bits (488), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 105/216 (48%), Positives = 139/216 (64%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L +G+ + EGY D + +L+ + LV+LDLGLP DGL Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R +LPVLILTARD L D+IAGLD GADDYLVKPF L EL AR+RALLRR Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + ++L+ +QV G E++LTPKEY LL L+ + G RE L +Y Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 WD EP +NTLEV+I++LR K+ IRTVRG GY++ Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLV 216 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 192 bits (487), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 98/214 (45%), Positives = 137/214 (64%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L L + ++EGYA + TA A +L G +++++LDLGLPD DGL Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + + K+++P LILTARD++TDKI GLD GADDYL KPF ++EL AR+R + RR Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S + +GN+ L++ QV E L+ +E+ LL LM AG + L +Y Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGY 214 W +E S+N +EVHIHNLR K+ K I+T+RG GY Sbjct: 181 WGDELSSNAIEVHIHNLRKKLPKDFIKTIRGVGY 214 >UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammaproteobacteria RepID=A0KN62_AERHH Length = 229 Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 143/221 (64%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD +L G++ A ++ GY D + A L++ ++ ++LDL LPD DG+ Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R++ TLPVLILTARD L D++ GLD G+DDY+VKPFAL+EL+AR+RAL+RR Sbjct: 61 SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q ++ L G L L +QV GE + LTP EY LL L+ ++G + ++ L +Y Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 WD +N +EVHIH+LR K IR +RG GY++ E+ Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYSDLIRNIRGVGYIVPQLEQ 221 >UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax=Gammaproteobacteria RepID=QSEB_SALTI Length = 219 Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 101/216 (46%), Positives = 137/216 (63%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDDTL+ G+ G++ D T R +++L + Y V+LDL LP DG Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+K PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR + Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q SEL G +TLN G + GE L L PKE+ALL L+ G + R+++ +YN Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 WD++ S+N +EVH+H+LR K+G IRTV G GY L Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTL 216 >UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=Proteobacteria RepID=C8KZR7_9PAST Length = 225 Score = 185 bits (470), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 96/218 (44%), Positives = 140/218 (64%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD ++ + + YA D V + AE++L Y LV+LDLGLP +DGL Sbjct: 1 MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L+ IRQKK + PVLI+TARD L +++GLD GADDY++KPF + EL AR+RA+LRRH Sbjct: 61 QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEE--LILTPKEYALLSRLMLKAGSPVHREILYNDI 178 Q +L G +TL+ V + G+ + L+ KE+++L L+ +AG + R L + I Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 Y W E +N ++ IH LR K+GK +I+ VRG G+M+ Sbjct: 181 YAWGEEVESNAIDFLIHGLRKKIGKEQIKNVRGVGWMM 218 >UniRef50_B3PG57 Response regulator receiver domain protein n=5 Tax=Gammaproteobacteria RepID=B3PG57_CELJU Length = 219 Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/216 (46%), Positives = 140/216 (64%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD LL +G++ A + G+A + T + A L+A +++LDLGLPD DGL Sbjct: 1 MQILLVEDDNLLAEGMMNALKRAGFAVNLSRTGKAACTYLQAEPPDILLLDLGLPDMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR KK + VLILTARD+ K+ GLD GADDYL KPFAL+EL AR+R L RR Sbjct: 61 DVLKFIRDKKLQVQVLILTARDSTNAKVLGLDAGADDYLTKPFALDELLARLRVLERRLG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + VG L+LN + V + G+ L+L+ +EY LL L+ G RE L +Y+ Sbjct: 121 TANTAMIHVGPLSLNTTQHLVLLNGDALVLSRREYMLLKALVENLGIIQTRESLEAKLYS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W++E ++N +EVHIHNLR K+ IRT+RG GY++ Sbjct: 181 WNDEVASNAIEVHIHNLRKKLPLNFIRTIRGVGYVV 216 >UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria RepID=B4RXL0_ALTMD Length = 221 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 137/221 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L L L+ + YA D V T A +L G +VVLDLGLPD DGL Sbjct: 1 MRILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + L IR+K TLPVLILTARD ++DKI+GLD GADDYL KPF ++EL AR+R L RR Sbjct: 61 NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ + + N++L+ + + E + L +E +L L+ AG + + L N +Y Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 W E ++NT+EVH+ +LR K+ I+T+RG GY + + E Sbjct: 181 WGEEVASNTIEVHVSHLRKKMPDNFIKTIRGVGYCISKSGE 221 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/216 (46%), Positives = 133/216 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L +G+ A + EGY D + A +L + LV+LDLGLP DGL Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R +PVL+LTARD +D+IAGLD GADDYLVKPF + EL AR+RALLRR Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N+ E L + L+ +QV G + L KE+ LL L+ + G + R+ L +Y Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 WD + +N LEVHIH+LR K IRTVRG GY++ Sbjct: 196 WDEDVESNALEVHIHHLRKKFFPELIRTVRGVGYLV 231 >UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=B6J7N7_COXB1 Length = 232 Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/218 (42%), Positives = 134/218 (61%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGH--YSLVVLDLGLPDED 58 M++L+VEDD L G+ + G+ D V + A L + H + +++LDLGLP Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 GL L IR+K PV+ILTARDT+ D+I GLD G+DDY+ KPF LEEL AR+RA+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + + G++TL+ V +E++++ +E+ALL +L+ AG + RE L + Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 Y W +N LEVHIHNLR + G IRT+RG GYM+ Sbjct: 190 YGWGENIDSNALEVHIHNLRKRFGAKLIRTIRGVGYMV 227 >UniRef50_Q1H1R2 Two component transcriptional regulator, winged helix family n=2 Tax=Betaproteobacteria RepID=Q1H1R2_METFK Length = 223 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 93/218 (42%), Positives = 137/218 (62%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD +L +G + GYA D T A +EAGHY +++LD+GLP DG Sbjct: 1 MRILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGLPGMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R+ ++PVLI++ARD + +I GLD+GADD+++KPF L ELHAR RALLRRH Sbjct: 61 EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRRHT 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G L +++G ++ + GE + L+ +E+ +L L+ G V +E + + + Sbjct: 121 LSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLCD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK--ARIRTVRGFGYML 216 W + S N +EV+I LR K+ IRTVRGFGY+L Sbjct: 181 WKTDISLNAVEVYISRLRSKLDAHGIHIRTVRGFGYLL 218 >UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PY86_9GAMM Length = 222 Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 135/222 (60%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD + LI + + E YA D R A +L+ Y +++LDLGLP+ DG+ Sbjct: 1 MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R K PVL+LTARD + D++ GLD GADDY+ KPFA+ EL AR+R L+RR Sbjct: 61 SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L VG+LTL++ +++ G E+ +T KEY LL+ M + L N IYN Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 W+ +N +E I+ LR K+G+ RI+ +RG G+ + A ++ Sbjct: 181 WEAGIESNAIEFLIYGLRKKIGQKRIKNIRGLGWYISAESQD 222 >UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged helix family n=9 Tax=Proteobacteria RepID=Q3SMF6_THIDA Length = 220 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 97/215 (45%), Positives = 134/215 (62%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD LL GL G+A D + A +L ++ VVLDLGLP DGL Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + PVL+LTARD L DK+ GLD+GADDY++KPF L+E+ AR+RAL+RR + Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +G++ L+ R V G+ + LT +E+ LL L+ +G + R +L +Y Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYM 215 WD +N LEVH+H+LR K+G IRTVRG GYM Sbjct: 181 WDEGVGSNALEVHVHHLRRKLGNDVIRTVRGVGYM 215 >UniRef50_A6T2K6 Two-component response regulator n=20 Tax=Proteobacteria RepID=A6T2K6_JANMA Length = 239 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 133/216 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L+ GL Q G VTTA AEQ++ A + ++VLDLGLPD+DGL Sbjct: 20 MQVLVVEDDELIASGLAAGLQAHGMVAVCVTTAVSAEQAIYAADFDVMVLDLGLPDQDGL 79 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R +K +LPV++LTARD + +IAGL GADDY++KPF L EL ARI A++RR Sbjct: 80 TLLKETRSRKLSLPVIVLTARDAIEYRIAGLQSGADDYVLKPFDLGELAARIHAVVRRSK 139 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + E+ G L L+ QVW+ + + L+ +E+ +L L AG + L + ++ Sbjct: 140 GRATQEITAGPLRLDPQYGQVWLNEKLIALSRREFDILIHLANAAGHWLAPSTLRDRVFG 199 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 D + S+N L VHIHN+R K+G I T RG G+ L Sbjct: 200 EDIQISSNALNVHIHNIRRKLGAEAIETSRGLGFRL 235 >UniRef50_B2JHN0 Two component transcriptional regulator, winged helix family n=4 Tax=Burkholderia RepID=B2JHN0_BURP8 Length = 228 Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 95/216 (43%), Positives = 132/216 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L+ GL +A + G+ D + AE +L HY LV+LDLGLP G+ Sbjct: 10 MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + +PVL+LTA+DT DK+ GLD GADDYL KPF L EL +R RAL+RR Sbjct: 70 DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +G + L+++ + V G + LT +E+A+L L+ AG P R + +Y Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W E +N +EVH+ NLR K+G IRTVRGFGY++ Sbjct: 190 WHEEVESNAIEVHVSNLRKKLGGDVIRTVRGFGYVV 225 >UniRef50_B4SPK8 Two component transcriptional regulator, winged helix family n=4 Tax=Xanthomonadaceae RepID=B4SPK8_STRM5 Length = 227 Score = 175 bits (444), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 137/218 (62%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LI EDD + GL + + +G+ D V A+ +L + Y+L+VLDLGLP DG Sbjct: 1 MRVLIAEDDPDIASGLCASLRRQGHVVDHVDNGAHADAALGSTQYALLVLDLGLPQLDGR 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+RQ+ L VL++TARD L +++ LD+GADDYLVKPFAL+E AR+RA LRR Sbjct: 61 DVLQRLRQRGDGLAVLVVTARDGLAERVRVLDLGADDYLVKPFALDEFEARVRAQLRRVT 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + G +L +G L L++ +VW+ + L LT +E+ LLS L ++A V R L + + Sbjct: 121 SNGNPDLRIGRLRLDLAGHRVWIDEQSLELTAREFGLLSALAVRAERIVSRAQLVEALCD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV--GKARIRTVRGFGYML 216 W + + N L++ +H LR K+ G IRTVRG GYML Sbjct: 181 WGQDLTDNGLDIALHRLRRKLQPGGIGIRTVRGLGYML 218 >UniRef50_C1TR79 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TR79_9BACT Length = 222 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 134/216 (62%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++ILIVEDD ++ + + GY D V A +L+ ++S+++LDLGLPD GL Sbjct: 3 IRILIVEDDGMIGEEIQEGLSRRGYTVDWVRDMESAATALDLENFSMMILDLGLPDGSGL 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R LPV+ILTA DT+ ++I GLD GADDY+VKPF LEEL ARIRAL RR Sbjct: 63 ELLQKMRDGGNRLPVIILTAWDTVPNRINGLDNGADDYMVKPFELEELSARIRALARRVR 122 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + +L ++ ++V G E+ L+ EY LL+ + G + RE L +Y Sbjct: 123 GDSSPTIRIADLEIDPATKRVSKDGREVRLSHSEYVLLTTFVENVGIVLSRERLEASLYG 182 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W+ + +N ++VHIHNLR+K+G ++ VRGFGY++ Sbjct: 183 WEKDVESNAIQVHIHNLREKLGTDIVKNVRGFGYLM 218 >UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellular organisms RepID=A1V147_BURMS Length = 283 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 99/215 (46%), Positives = 138/215 (64%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VEDD ++ +G+ A + +G A D V A +L Y L++LDLGLP DG+ Sbjct: 66 ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGIDV 125 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 L +R + LPVLILTARD + D++ GLD GADDYLVKPF L+EL AR+RAL+RR + + Sbjct: 126 LRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGR 185 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 ES + G LTL+ QV + G + L+ +E+ALL L+ + G+ + + L +Y W Sbjct: 186 SESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYGWG 245 Query: 183 NEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLV 217 E +NT+EV+IH LR K+G IR VRG GYM+V Sbjct: 246 EEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVV 280 >UniRef50_C3NYL4 DNA-binding response regulator n=36 Tax=Vibrionaceae RepID=C3NYL4_VIBCJ Length = 247 Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 143/216 (66%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDDTLL + + +A +GY D + +L+ ++ ++LDL LPD DGL Sbjct: 30 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 89 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +IR+ YTLPV+ILTARD ++D++ GLD GAD+Y+ KPFALEEL AR+R ++RR + Sbjct: 90 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 149 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E + VG L L++ +++++ + L LT EY +L+ LM +AG + +E+L ++ Sbjct: 150 GSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 209 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 WD S N +EVHIHNLR K+ ++ VRG GYM+ Sbjct: 210 WDEGSSDNAIEVHIHNLRKKLPDNLVKNVRGVGYMI 245 >UniRef50_A2SKN3 Two component transcriptional regulator, winged helix family n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SKN3_METPP Length = 266 Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 135/218 (61%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL+ EDD L + A +++G+ D S++ Y L++LD+GL DG Sbjct: 38 MHILLAEDDPALAESTARALRSQGWVVDHTPRGEPVPTSVKTDPYDLLILDIGLIGIDGF 97 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R++ TLPVL+LTARD + D++ GL++GADDYLVKPFAL EL AR++ L RRH Sbjct: 98 ETLRRVREQGSTLPVLMLTARDAIEDRVHGLEMGADDYLVKPFALAELIARVKVLTRRHQ 157 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + S L +G L +++ + W+G + L L+ +E+A+L L+ + G V +E + I Sbjct: 158 ARQGSVLSMGGLRMDLEANRAWIGEQPLDLSAREWAVLEYLLSRVGHVVGKEQILQAISG 217 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 WD+ S N +EV++ LR K+ A RIR VRGFGY++ Sbjct: 218 WDDALSENAVEVYVSRLRPKIEPAGLRIRAVRGFGYLV 255 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 91/217 (41%), Positives = 131/217 (60%), Gaps = 1/217 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + + GY+ DS A HY L+VLDL +P DGL Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 FL R R K PVLILTA+D + D + GLD GADDYLVKPF +EL AR+R L+RR++ Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 SE+ G L +++ ++ V GE++ LT KEY +L LML G + R+ + +++ Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR-IRTVRGFGYML 216 +D +N ++V I N+R K+G+ I+T RG GY++ Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEAIQTKRGLGYVV 217 >UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Francisella RepID=B0TXH6_FRAP2 Length = 228 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 96/221 (43%), Positives = 140/221 (63%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+ EDD L +GL+ A Q EG + V+ A+ +E+G Y +VVLD+G+P + GL Sbjct: 1 MRLLLAEDDLNLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R K +P+++LTARD L D+I GLD+GADDYL KPF L+EL ARI+A+ RR + Sbjct: 61 EVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 121 NQ-GES---ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 + G+S E+ G+ + N V G + ++ KE ALL+ L+ AG V + L Sbjct: 121 TRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGKAR-IRTVRGFGYML 216 ++Y+ D E TNTLEVH+HNLR K+ I+T+RG GY + Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIPNFIQTIRGVGYFV 221 >UniRef50_B7S3C0 Response regulator receiver domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S3C0_9GAMM Length = 222 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 95/216 (43%), Positives = 131/216 (60%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++IL+VEDD L + L A + E YA D + + ++ A Y L++LDLGLP+ G+ Sbjct: 5 LRILLVEDDVQLGESLEAALRLEHYAVDWLRSGEPVRATIGATPYDLMILDLGLPEVPGI 64 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + R K+ +PVL+LTAR+TL DK+ GLD GADDYL KPF ++EL AR+R LLRR Sbjct: 65 QVLRQTRADKHDIPVLLLTARNTLDDKVDGLDSGADDYLTKPFEIDELFARVRTLLRRRG 124 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +L +T++ R V GE L LT +EYA+L L+ AG V R L IY+ Sbjct: 125 EGRSQQLEARGITIDPVDRLVIFEGEMLDLTAREYAILEILIRNAGRFVSRPRLEEGIYS 184 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W E +NT+EV+I LR + G I T+RG GY + Sbjct: 185 WGEEVGSNTVEVYISRLRKRFGSDCIETMRGVGYRI 220 >UniRef50_B2UJM1 Two component transcriptional regulator, winged helix family n=5 Tax=Ralstonia RepID=B2UJM1_RALPJ Length = 221 Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 93/217 (42%), Positives = 134/217 (61%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL++EDD L L A + GY V A++ + + +VLDLGLPD +G F Sbjct: 4 ILLIEDDLPLGTALARALRQAGYNATWVRRLVDAQKWITTNTFEAIVLDLGLPDGEGHVF 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 L +R +PV+I +ARD L++++ GLD GADD+LVKPF ++EL AR+RA+LRRH Q Sbjct: 64 LEELRAAHRDVPVIIASARDALSERLKGLDAGADDFLVKPFPVDELIARLRAVLRRHAGQ 123 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 ++ VGNL + +++V G+ + LTP+EY LL L+ +A V RE L + +Y Sbjct: 124 STNQWSVGNLVVEPSQKRVTQDGQVIELTPREYQLLLELVRRAHRWVPRETLMDALYREG 183 Query: 183 NEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 + S N LEV IH+LR K+G I+T+RG GYM+ N Sbjct: 184 DSVSANALEVVIHHLRRKLGNETIQTIRGVGYMIGGN 220 >UniRef50_B9TDT4 Two-component system sensor histidine kinase/response regulator, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TDT4_RICCO Length = 233 Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 132/218 (60%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++IL+VEDD +L L+ + YA D + ++++ Y LV+LDLGLP +G Sbjct: 10 VRILLVEDDVVLGDALVQSLVNATYAVDWFRNGKEGVLAVQSQSYDLVLLDLGLPFLNGF 69 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F+ R+R K +PV++LTA D D + D+GADDYL+KPF L EL ARIRA +RR + Sbjct: 70 EFIKRLRNGKQAVPVIVLTANDNSEDIVRAFDLGADDYLIKPFKLPELTARIRAQIRRVS 129 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S++ +G L L+ R ++ GE+L L+P+E++LL L K G V ++ L + N Sbjct: 130 AHFSSKVSIGELELDTKERLAFVKGEKLSLSPREFSLLETLSNKFGKLVTKDALIESLCN 189 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 WD++ N +EV++H LR K+G I VRG GYM+ Sbjct: 190 WDHDIGPNAIEVYVHRLRKKLGDCDVTISNVRGLGYMM 227 >UniRef50_Q21TS4 Two component transcriptional regulator, winged helix family n=2 Tax=Burkholderiales RepID=Q21TS4_RHOFD Length = 239 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 135/218 (61%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+T L Q L + E Y D + A+ +L++ Y+L++LDL LP DG Sbjct: 16 MRILVVEDNTELAQWLGRTLRKEQYTVDCIDNGADADFALKSEKYNLIILDLALPKLDGK 75 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R + PVLILTA +T+ +++ LD GADDY+ KPF +EEL ARIR LLRR + Sbjct: 76 EVLRRLRARDDQTPVLILTANNTIQSRVSKLDQGADDYMAKPFEIEELEARIRMLLRRSS 135 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q + G+L+ N R+ + + L LTP+E A+L L+ K+G+ V + L +++ Sbjct: 136 GQASPLIACGDLSYNTNTREFHISQQLLALTPRERAVLEMLLRKSGTTVTKHALAQSLFS 195 Query: 181 WDNEPSTNTLEVHIHNLRDKV--GKARIRTVRGFGYML 216 + ST+ +E+++H LR K+ A+I T+RG GY+L Sbjct: 196 LSEDASTDAIEIYVHRLRKKLEHSSAQIMTLRGLGYLL 233 >UniRef50_B6QYV6 DNA-binding response regulator n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QYV6_9RHOB Length = 222 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 86/216 (39%), Positives = 132/216 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L+ + + + D V +AE +L G + LV+LDLGLP +DGL Sbjct: 1 MRVLLVEDERLIADAIKAFLERHEFIVDWVDDGLLAEDALRTGKFDLVILDLGLPGQDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 FL +R K +P+LIL+AR+T ++I GL++GADDYL KPF +EEL AR RAL+RR Sbjct: 61 EFLRAVRDDKADVPILILSARETTKNRIDGLNLGADDYLTKPFDMEELLARCRALVRRSV 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G LTL++ +++ G E++L P + LL+ L+ + G V + L +Y Sbjct: 121 GRTRMLLQHGALTLDLDQKKACYNGAEVVLQPLAFRLLTILLERRGRVVSKSDLMEKLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W+ +N LEV++ +R K IRT+RG GY++ Sbjct: 181 WEENAESNVLEVYVSQIRRKTTSKLIRTIRGVGYIV 216 >UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellular organisms RepID=Q2T0V1_BURTA Length = 291 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 93/218 (42%), Positives = 131/218 (60%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI EDD++L GL + + GYA D V A+ +L + L++LDLGLP GL Sbjct: 45 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 104 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R + LPVLILTA D++ +++ GLD+GADDY+ KPFAL EL AR+RAL RR Sbjct: 105 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 G + + G+L+ + R + L L+ +E LL L+ + G V +E L + + Sbjct: 165 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 224 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 W E S N +EV++H LR K+ + RI TVRG GY L Sbjct: 225 WGEEVSNNAIEVYVHRLRKKIEPSGVRITTVRGLGYCL 262 >UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=Burkholderiales RepID=Q2KYE7_BORA1 Length = 231 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 93/218 (42%), Positives = 131/218 (60%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI EDD++L GL + + GYA D+V A+ +L A + L++LDLGLP GL Sbjct: 1 MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGLPQVTGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R + LPVLILTA D++ ++ GLD+GADDY+ KPFAL EL AR+RAL RR Sbjct: 61 EVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 G + + G L + R + L L+ +E +LL L+ ++G V + L + + Sbjct: 121 GGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDHLCE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV--GKARIRTVRGFGYML 216 W E STN +EV++H LR K+ +I TVRG GY L Sbjct: 181 WGEEVSTNAIEVYVHRLRKKLEPSGVKIITVRGLGYCL 218 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 138/227 (60%), Gaps = 6/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAA-QTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDG 59 M++L+VED+ L GLI + E Y DS A + +E Y ++LD+ LP DG Sbjct: 1 MRLLVVEDEKKL-NGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDG 59 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 + RIR KK +P+L+LTARD + DK+ GLD GADDYLVKPF EEL ARIR LLRR+ Sbjct: 60 FEVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRN 119 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + ++ + V NL +++ + V+ G + L+ +EY++L L+ G + RE + + I+ Sbjct: 120 SGNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIW 179 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVANEEN 222 N++ E TN ++V+I LR K+ + I T+RG GY+L + EN Sbjct: 180 NYEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVLRVDNEN 226 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 135/225 (60%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ + L + GYA D+ T A + Y LVVLD LPD DGL Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R +K PVLIL+AR L D++ GL+ GADDYLVKPFA EL AR+RALLRR Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E L V +L L+ RR+V G E + L PKE+ +L +M G P+ R ++ +++ Sbjct: 121 PTPE-RLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE 221 D + TN ++V+I +LR K+ + I+TVRG GYM+ A ++ Sbjct: 180 MDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIEAPDK 224 >UniRef50_A7IE82 Two component transcriptional regulator, winged helix family n=5 Tax=Alphaproteobacteria RepID=A7IE82_XANP2 Length = 220 Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 95/214 (44%), Positives = 127/214 (59%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD +L+ GL + G D TT A +L AG + VVLD+ LPD GL Sbjct: 1 MRILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA +R + PVL+LTA D D++ GLD GADDYL KPF L+EL+AR+RA+ RR + Sbjct: 61 DVLAGLRARGNATPVLLLTALDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARRGH 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G L L+ + G + L+ +E+A+LS LM + G R + +Y Sbjct: 121 GRAGPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSALMERPGVIRSRMEIEERLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGY 214 W E +N +EVHIHNLR KVG+ I TVRG GY Sbjct: 181 WQEEVESNAVEVHIHNLRAKVGRETIETVRGLGY 214 >UniRef50_A1TXC3 Two component transcriptional regulator, winged helix family n=2 Tax=Marinobacter RepID=A1TXC3_MARAV Length = 227 Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 92/216 (42%), Positives = 125/216 (57%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+ EDD L ++ + + D V + A +L + L +LDL LP DGL Sbjct: 1 MRILLTEDDHPLANTMLSMLRDDQNTVDWVDDGQQALNALLNESFDLAILDLTLPRVDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + ++R++ LP++ILTAR LT+K+ GLD GADDYL KPFA+ EL ARIRA+ RR + Sbjct: 61 DIVRQVREQGVELPIIILTARSELTEKLQGLDAGADDYLTKPFAMSELKARIRAVTRRRS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L VG L L+ Q+ +G E +L E +L LM R L +Y Sbjct: 121 GTRVSGLKVGRLVLDPDSAQLQVGTETFVLPRSELQILHYLMRHPDQVATRRRLEEQLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 WD +N LEVH+H+LR ++GK IRTVRG GYML Sbjct: 181 WDQGAESNALEVHVHHLRRRLGKQAIRTVRGVGYML 216 >UniRef50_B8IU63 Two component transcriptional regulator, winged helix family n=20 Tax=Proteobacteria RepID=B8IU63_METNO Length = 225 Score = 165 bits (418), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED + + ++ +T G+A D M + LE Y LV+LD+ LP DG Sbjct: 1 MRILLVEDTQDVGEAIVARLRTLGHAVDWERDGAMGDAVLEVQPYDLVILDVNLPGLDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R ++ PVL+LTAR + D++ LD+GADDYLVKPF EL AR+RALLRRH+ Sbjct: 61 AILKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ + GNL+L+ R +GG+ L LT +E+ L+ L + G + L + + Sbjct: 121 GHADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRLST 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANE 220 ++ EPS N LE + LR K+ +A IRT+RG GY +V E Sbjct: 181 FEEEPSENALEQIVARLRRKLAQAGAEPEIRTLRGLGYQVVCPE 224 >UniRef50_A5WDA5 Two component transcriptional regulator, winged helix family n=14 Tax=Gammaproteobacteria RepID=A5WDA5_PSYWF Length = 224 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/215 (40%), Positives = 131/215 (60%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL++EDD+ + G++L ++ G D + A+ E +L+ G + V+LDL LP DG+ Sbjct: 3 RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDGMT 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L R K PVLI+TARD + +++AGL+ GADDYLVKPFAL+E+ AR++AL+RR Sbjct: 63 VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQG 122 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 + + E+ G + +QV G+ + LT KE A+L +++ R L + +Y W Sbjct: 123 RCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGW 182 Query: 182 DNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 + +N +EVHIH+LR K+G I T RG GY L Sbjct: 183 QQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYL 217 >UniRef50_A9BVB6 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=A9BVB6_DELAS Length = 226 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 93/202 (46%), Positives = 127/202 (62%) Query: 15 GLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFLARIRQKKYTLP 74 G+ LA Q + + V A L+ G L+VLDLGLPD DGL LAR+R+++ LP Sbjct: 15 GVRLALQDQRFDVTWVRRIAEARPLLDQGACDLLVLDLGLPDGDGLSLLARVRRERKDLP 74 Query: 75 VLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQGESELIVGNLTL 134 +LILTARD L D++ GLD GADDY+VKPFAL EL +RIRAL RR E V L L Sbjct: 75 ILILTARDGLDDRLRGLDGGADDYVVKPFALAELLSRIRALRRRSLGTEEQVFDVRGLVL 134 Query: 135 NMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHI 194 N R+V + G E+ L+P E+ALL+ L+ + R +L ++ ++N+LEVHI Sbjct: 135 NERSRRVSVFGREIDLSPSEFALLAALIRRPDQVFSRHMLEEEVLPGSGRYASNSLEVHI 194 Query: 195 HNLRDKVGKARIRTVRGFGYML 216 +LR ++G+ +RTVRG GY+L Sbjct: 195 SSLRRQIGEGYVRTVRGVGYVL 216 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 129/216 (59%), Gaps = 1/216 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L + L+ + E YA D+ Q Y ++VLD+ LP G Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 FL ++R K T PVL+LTARD + D++ GL+ GADDYL KPF +EEL ARIRAL+RR Sbjct: 72 EFLQKLRPTK-TSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q + L + +L+++ R+V GEE+ +T +EY L+ L L G V R LY +++ Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 D+ +N L+VH+ NLR K+ I T RG GY + Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLAPELITTRRGHGYSI 226 >UniRef50_B2TDT5 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=B2TDT5_BURPP Length = 227 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 132/220 (60%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD + Q L+ A + Y+ D V ++ Y++V+LDLGLP G+ Sbjct: 1 MRILLVEDDLQIGQSLLRALKDADYSVDWVRDGVAGRDAMANAEYTVVLLDLGLPGLSGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R +PVLILTARD L ++ GLDVGADDYL+KPF + EL ARIRA+LRR Sbjct: 61 ELLKSSRAAGNAVPVLILTARDDLDSRVQGLDVGADDYLLKPFDVPELLARIRAVLRRKA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L +L+L++ +R + G +L+ +E+AL+ + + G+ + RE L + +Y Sbjct: 121 GYASSRLGDESLSLDLDKRTLTCNGATTVLSAREFALMLAFLERPGTILSREQLEDRLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANE 220 W E +N ++V IH++R K G + IR VRG G+ ++ E Sbjct: 181 WGKEVESNAVDVLIHSVRKKFGLSVIRNVRGLGWTVMLGE 220 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 136/225 (60%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VED+ +L + + + GYA D+ + A + E Y L++LDL LP DG+ Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +IR + + +LIL+AR + DKI GLD GA+DYL+KPF +EL ARIR LLRR Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +Q + + N+TL+ ++ V + GE + +T KEYA+L LML + E L +++ Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANE 220 + + +N+L+ HIH+LR K+ I+T+RG GY++ N+ Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITEND 225 >UniRef50_B2HUW9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=12 Tax=Acinetobacter RepID=B2HUW9_ACIBC Length = 220 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/216 (39%), Positives = 129/216 (59%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+ EDD + + + +GY D V A ++E Y ++LD GLP G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR K+ +PV+ +TARD++ D++ GLD+GA+DYLVKPF+LEEL ARIRA LR+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +S L G+L L+ + V G+ + LT KE+ +L +LM+ + R+ L +Y Sbjct: 121 LNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W E +N +EV I+ LR K+G + I+T+RG GY + Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSSIKTIRGLGYRM 216 >UniRef50_P22104 Transcriptional regulatory protein tctD n=145 Tax=Proteobacteria RepID=TCTD_SALTY Length = 224 Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 135/223 (60%), Gaps = 3/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+ ED+ L L A G+A D V A+ L + Y+L VLD+ +P DGL Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + R+R++ TLPVL+LTAR + D++ GL+VGADDYL KPF LEEL AR+RALLRR Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q +G L + + G+ L LTP+E ALL+ LM + PV R+ L+ +++ Sbjct: 121 GQVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 181 WDNEPSTNTLEVHIHNLRDKV--GKARIRTVRGFGYMLVANEE 221 ++E S ++E++IH LR K+ RI T+RG GY+L +E Sbjct: 180 LNDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVLERGDE 222 >UniRef50_A9I4J2 Two component response regulator n=11 Tax=Burkholderiales RepID=A9I4J2_BORPD Length = 228 Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 131/218 (60%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ + L+ A G+ D AR AE + A Y +V+DL LPD+ GL Sbjct: 1 MRILLVEDELEMASWLVRALAQSGFTPDHAPDARSAEALMAANEYDAIVMDLRLPDKHGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + PVL+LTA+ L D++ GL++GADD+L KPFALEEL AR+ AL+RR Sbjct: 61 VVLRDMRGRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARVAALVRRSR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G+L + R + G L LTP+E+A L L+ ++G PV + L+ ++ Sbjct: 121 GRQFPRLQCGSLAYDGESRAFTLDGNLLFLTPREHAALVALLTRSGYPVDKAQLFGKVFT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 D+E + + +EV +H LR K+ + RI TVRG GYML Sbjct: 181 QDSEANLDAIEVVLHRLRKKLAGSDVRIVTVRGLGYML 218 >UniRef50_A4Y6W9 Two component transcriptional regulator, winged helix family n=1 Tax=Shewanella putrefaciens CN-32 RepID=A4Y6W9_SHEPC Length = 222 Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 130/222 (58%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD LL QGL+ A + Y + + A Q+ + + +++LDLGLPD L Sbjct: 1 MRILLVEDDQLLAQGLVTALERLHYRVEHCISGNQALQAAQNSLFDVMILDLGLPDGLAL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R LP+L+LTA D L KI LD GADDY++KP + E+ AR+R + RRH Sbjct: 61 PVIKTLRASNQALPILVLTAWDHLETKIDVLDAGADDYVLKPCDVREIEARLRVVHRRHQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + LI LTL++ + + + LT +E+ LL LML G + ++ L Sbjct: 121 QRQHDLLISNELTLDIQSHKCCFRNKGVHLTTREFLLLKELMLHPGKILSKQHLEEINTG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 W+ + N+LEVHIHN+R K I+TVRGFGYML +++EN Sbjct: 181 WNGDNEGNSLEVHIHNIRKKTATYIIKTVRGFGYMLKSHDEN 222 >UniRef50_Q6FA81 Putative two-component response regulator n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FA81_ACIAD Length = 218 Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 85/216 (39%), Positives = 130/216 (60%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI EDD + + + +GY D V A +++ Y ++LD GLP G Sbjct: 1 MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ + PV+++TARD+++D++ GLD+GA+DYLVKPF+LEEL ARIR+ +R Sbjct: 61 QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q +S L N+ LN + V + GE + LT KE+ +L ++M V RE L + +Y Sbjct: 121 QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W +E +N +EV I+ LR K+G I+T+RG GY + Sbjct: 181 WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRM 216 >UniRef50_A9BTX9 Two component transcriptional regulator, winged helix family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BTX9_DELAS Length = 221 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 132/220 (60%), Gaps = 2/220 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L G+ Q EG+ D+VT A + Y + VLDLGLP G+ Sbjct: 1 MRVLVVEDDPALRLGICRRLQAEGWQVDAVTDGEYALTATATQDYDIAVLDLGLPRRPGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R ++ L VLILTA D L +++ GL+ GADDYL KPF EEL AR+RA++RR + Sbjct: 61 EVLRAWRAQRKALAVLILTASDGLQNRLLGLNEGADDYLAKPFEPEELVARMRAIVRRSH 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L VG L+ N R++++ GE L L+P+E ALL L+ G+ V + + + + + Sbjct: 121 GGASNLLTVGALSFNTDTRELFLQGERLALSPREAALLELLISAPGAAVPKSRIISTMSS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLVA 218 W+ S N +E++I LR K+ A RI T+RG GY+L A Sbjct: 181 WEANFSANAVEIYILKLRRKLAGAGVRIVTLRGIGYVLEA 220 >UniRef50_Q2BR69 Two component Transcriptional regulator, Winged helix family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BR69_9GAMM Length = 219 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 88/214 (41%), Positives = 130/214 (60%), Gaps = 2/214 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L+VEDD LL Q + + Q Y D + + ++ H +++LDL LPD DGL Sbjct: 3 MHVLLVEDDPLLGQVIEIKLQERQYQVDWIQSGSAVLSTVRNLHPDIIILDLNLPDIDGL 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R + + PVLILTAR + +++ GLD+GADDYL KPF ++EL AR+RA+ RR + Sbjct: 63 EILKRLRAENISTPVLILTARHAVEERVNGLDLGADDYLTKPFEMDELEARLRAVQRRLH 122 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + E+ G++ ++ RQV+ G + + +E+ LL L+ G + R + +Y Sbjct: 123 GRSKEEITFGDIKIDSAARQVFFKGSPIEASRREFDLLVLLLNNTGRVMTRAKIEATLYA 182 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGY 214 D E +N LEVHIHNLR K+GK I TVRG GY Sbjct: 183 DDVE--SNALEVHIHNLRKKLGKELISTVRGVGY 214 >UniRef50_Q480M1 Response regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480M1_COLP3 Length = 243 Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 132/238 (55%), Gaps = 22/238 (9%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L + L + EG+ D ++ ++A +L + +V+LDLGLPD DGL Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSHDMVILDLGLPDIDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR KK LPV+ILTARD++ K+ GLD GADDYL KPF ++EL AR+R + RR Sbjct: 61 LVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIERRLG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWM----------------------GGEELILTPKEYALL 158 S + + ++L+ +V++ G E+ + KE+ +L Sbjct: 121 TASSSMITIDRVSLDTKSHKVYLLQCNQVNNEQNHEQEGEINAQNGASEVHFSKKEFMVL 180 Query: 159 SRLMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 LM AG RE + + +Y W E +N +EVHIH LR + I+ VRG GY++ Sbjct: 181 KALMENAGRIQSREQIESKLYQWGEEVLSNAVEVHIHKLRKNLPNKFIQNVRGVGYII 238 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 133/220 (60%), Gaps = 6/220 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGH--YSLVVLDLGLPDED 58 MKILI+ED+ L L + EGY D A+ +E Y LV+LD+ LP D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 G+ +R K + P+L+LTA+D + DKI GL+ GADDYLVKPF+ EEL ARIRALLRR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 N + L V +++L+ ++V+ G E++LT KE+A+L LM + +E + + + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGY 214 + ++++ +N +E HI NLR K+ + R I T+RG GY Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGY 220 >UniRef50_Q2W278 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=11 Tax=Bacteria RepID=Q2W278_MAGSA Length = 225 Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ L + + ++ G+ D T A + E+ Y +LDLGLPD DGL Sbjct: 1 MRILLVEDNDRLAEFISAGLKSAGFVPDVFGTVADATAAFESAAYQAAILDLGLPDGDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + R K P+++LTARD ++D+++GL+ GADDYL+KPFA+EEL AR+RA+LRR Sbjct: 61 DIVRAQRAKAAPCPIMVLTARDRVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 EL +GNLT + R+V + G+ + + +E +L L+ ++G V + L +Y Sbjct: 121 AALSVELSLGNLTFDTAGREVRVDGQLVAMPRREMEMLEHLLRRSGKVVSKRSLEEGLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYML 216 +D++ + N++EV + LR ++ + + T+RG GYML Sbjct: 181 FDDDVTPNSVEVLVSRLRKRLQQTGAGVTVHTLRGIGYML 220 >UniRef50_A9BQG9 Two component transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=A9BQG9_DELAS Length = 253 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 134/227 (59%), Gaps = 11/227 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ + GL + YA D TT A +LE + V+LDLGLPD DG Sbjct: 22 MRILVVEDNAGIAAGLQANLEQRRYAVDVCTTVAEAWHALEMERFDAVLLDLGLPDGDGS 81 Query: 61 HFLARIRQKKY-----------TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELH 109 L R+R + PVLILTARD + ++IAGLD+GADDYLVKPF ++EL Sbjct: 82 EILRRLRGPRRPGGDSQALPDPNTPVLILTARDQVRERIAGLDLGADDYLVKPFDIDELE 141 Query: 110 ARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 AR+RA+LRR Q + G L ++ R V G+ + ++P+E+++L L+ G + Sbjct: 142 ARLRAMLRRAGGQAAPVIRHGELEVDPAARTVRRDGKLVEMSPREFSVLWVLLQARGRVL 201 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 R+ + +Y+W +N +EVHIH+LR K+G A I T+RG GY L Sbjct: 202 SRQQIEEHLYSWGTAVESNAVEVHIHHLRKKLGNASIVTMRGVGYFL 248 >UniRef50_C5TCA4 Two component transcriptional regulator, winged helix family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TCA4_ACIDE Length = 239 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 134/216 (62%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++IL++EDD L + L+ G+ C+ + A L A H++ V+LD LPD +GL Sbjct: 20 LRILLIEDDAPLAEALMAFLNARGFVCECAASLADARALLPAAHWAAVLLDWQLPDGEGL 79 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ V++LTARD +TD+I GLD GADDYLVKP+ +EL AR+RA+ RR + Sbjct: 80 ALLPLLRRTLPDSAVIMLTARDQITDRIRGLDAGADDYLVKPYDPDELLARLRAVERRRS 139 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 G + L + L++++ R V + G+ + +T KE+ALL + L+ RE L + +Y Sbjct: 140 GVGSATLQLQGLSIDLARMVVTLDGQPVEITAKEWALLRVMALRPDRIHTRESLQDALYG 199 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 D S+NTLEV I NLR K+G+ RI+T+RG GY L Sbjct: 200 LDANASSNTLEVFISNLRRKIGRDRIQTLRGLGYKL 235 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 133/222 (59%), Gaps = 3/222 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD + ++ + EGYA D + Y V+D+ LP+ DGL Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + R+R ++ +PVL L+AR ++ D++ GL G DDYL KPFA EL AR++AL+RR + Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 121 NQGE-SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 E + L G++TL++ R V +GG+ + L P+E++LL L+ AG PV + ++ ++ Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 180 NWDNEPSTNTLEVHIHNLRDKV--GKARIRTVRGFGYMLVAN 219 ++ +P TN ++V + LR K+ K RI T+RG GY+ A Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPDKTRIETLRGVGYVFKAG 227 >UniRef50_C9XWL0 Transcriptional regulatory protein qseB n=1 Tax=Cronobacter turicensis RepID=C9XWL0_CROTZ Length = 245 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 93/216 (43%), Positives = 131/216 (60%), Gaps = 1/216 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +KIL++EDD L G+ +A +G+ V A L+ L++LDLGLPD DG+ Sbjct: 21 VKILLIEDDLDLGNGVRIAFADQGFDVIWVRRKEDALHQLDVCVPELILLDLGLPDGDGM 80 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +A +RQ+ LPV+ILTAR TL D+++GLD GADDYLVKPF L EL AR+RAL RR Sbjct: 81 SLMAYVRQRFKGLPVIILTARGTLQDRLSGLDAGADDYLVKPFVLAELLARVRALARRSY 140 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + L+L++ R+V + + LT EYALL LML+ + R L ++ Sbjct: 141 GFENEAIEIRGLSLHVPTRRVTVSARHVELTASEYALLETLMLRPDRVLTRGFLEERLFG 200 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 E +N L+VH+ NLR K+G +RTVRG GY++ Sbjct: 201 -AKENLSNALDVHMGNLRRKIGDGYVRTVRGVGYVI 235 >UniRef50_C1ZD82 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD82_PLALI Length = 235 Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 95/217 (43%), Positives = 131/217 (60%), Gaps = 2/217 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ LIVED LL L + EGYA D+ Y ++VLD LP G Sbjct: 1 MRALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R KK T PVL+LTARD + D++ GLD GADDYLVKPF EL AR+RAL+RR Sbjct: 61 DLLKQLRTKKST-PVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAA 119 Query: 121 NQGESELIVGN-LTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + ES L +G +T+N+ R+V+ E++LT +EY++ L L G V R LY+ I+ Sbjct: 120 GESESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEYLALHRGRVVPRTDLYDHIF 179 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 + ++E +N L+VHI NLR K+G+ I T RG GY++ Sbjct: 180 DENDESLSNLLDVHISNLRRKLGRDVIETRRGLGYII 216 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 131/227 (57%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++EDD + + + + Y + A LEA + L++LDLGLP DGL Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F IRQ+ ++LP+LILTARDT +DK+ GLD GADDY+VKPF L EL AR+RALLRR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L L+ R +V +EL LTPKEYA+L L+ + R + + + Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 181 WDNEPSTNTLEVHIHNLRDK---VGKAR--IRTVRGFGYMLVANEEN 222 D P T++VH+ +LR K VG I TV GFGY L N ++ Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLNPNFQS 227 >UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter RepID=Q6F8E2_ACIAD Length = 226 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 140/226 (61%), Gaps = 17/226 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTT-----ARMAEQSLEAGHYSLVVLDLGLPD 56 KILI+EDD ++ + I + + + V A +A+QS + LV+LDLGLP Sbjct: 3 KILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQS-----FDLVLLDLGLPM 57 Query: 57 EDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 DG+ L +IRQK +PVLI++ARD L +++ GL+ GADDYL+KP+ +EL ARI ALL Sbjct: 58 MDGMQVLKQIRQKT-GVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALL 116 Query: 117 RRHNNQGESELIV------GNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVH 170 RR N++ S L G + LN+ + G+E+ L+ +E+A+L LM Sbjct: 117 RRTNSKDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFS 176 Query: 171 REILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 + L + +Y++D+E ++NT+EV+IH+LR K+GK IRT+RG GY L Sbjct: 177 KANLEDKLYDFDSEVTSNTIEVYIHHLRSKLGKNFIRTIRGLGYRL 222 >UniRef50_Q8GP20 Swarming motility regulation protein rssB n=14 Tax=Enterobacteriaceae RepID=RSSB_SERMA Length = 219 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/216 (42%), Positives = 127/216 (58%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL+VEDD L + L A + G+ V AE L +G + L++LDL LPD DGL Sbjct: 1 MNILLVEDDLQLGKALCRALELAGFNLCWVRLIADAENKLSSGGFDLMLLDLTLPDGDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R +P++ILTARD + + LD GA+D+L KPFAL EL +R++A+ RR Sbjct: 61 QKLIAWRAAGQNIPIIILTARDRIESLVNSLDSGANDFLAKPFALPELISRVKAVNRRMA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +G L L+ QV + E L+L+ KEY LL LM AG+ V + +L ++ Sbjct: 121 GFASQTWSLGALYLDPVNHQVMLDNELLMLSKKEYHLLHELMRCAGTVVRKAVLEQRLFG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 + +N+LEVH+HNLR K+GK R+ TVRG GY+L Sbjct: 181 HGDSVESNSLEVHMHNLRRKIGKDRVITVRGIGYLL 216 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 135/222 (60%), Gaps = 4/222 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ + + + A + EG+ D + A + A Y VLD+ LP DG+ Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R++ +LP+L+L+AR DKI GL+ GADDYL KPF+++EL AR+RAL+RR Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 G S VGNLTLN+ R+V+ G +++ LT KE+++L LM G R + ++N Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 + +P TN ++V+I LR K+ + I+TVRG GY + A Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIEA 267 >UniRef50_Q0VPT5 DNA-binding heavy metal response regulator, putative n=4 Tax=Gammaproteobacteria RepID=Q0VPT5_ALCBS Length = 222 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/220 (41%), Positives = 125/220 (56%), Gaps = 1/220 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD LL GL + G++ D+ TAR A + Y +LDLGLPD +GL Sbjct: 1 MRLLLVEDDYLLTNGLSAQLEKAGFSVDTARTAREARHLGQQESYRAGILDLGLPDGNGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + R K + PVLILTAR DK+ GL GADDYL KPF EEL AR+ A++RR Sbjct: 61 DVLKQWRTHKVSFPVLILTARGDWQDKVNGLKAGADDYLAKPFQTEELIARLHAIVRRSE 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGE-ELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + L G L+ R+ + G E E LT E+ LL LM + G +E L + +Y Sbjct: 121 GRIMDTLTAGRFELDENRQTLRAGDETEHSLTGTEFRLLRCLMSRPGQVFSKEQLLDQLY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 + D+ PS N +E ++ LR VG I+T RG GY+ A+ Sbjct: 181 SIDDIPSENVIEAYVRRLRKLVGPDTIKTRRGQGYLFDAD 220 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 3/224 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VED+ + L+ EGY + R+ L + + LV+LD LP EDG+ Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L R RQK T PVL LTARD +T+++ GLD GADDYL KPFA +EL AR+RALLRR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 L ++ ++ ++V GG L LT KE++LL + G + R +Y+ +++ Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 182 DNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYMLVANEEN 222 + +NTLEVH+ LR K+ G I+T+RG GY+L ++ Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACGPRVIQTLRGRGYVLETTSDD 227 >UniRef50_A4JRJ8 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=A4JRJ8_BURVG Length = 241 Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 129/226 (57%), Gaps = 4/226 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L L EG+A D T +A ++ + Y LV+LDLG+PD +G+ Sbjct: 1 MRLLLVEDNARLASLLADGLAKEGFAVDWCATLDLATRAFASTPYDLVLLDLGMPDGNGV 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F+ +R+ +T+PVLI+TAR +L D++ GLD G DDYLVKPF L EL AR RALLRR Sbjct: 61 TFVKALRRGGHTVPVLIITARSSLDDRVIGLDSGGDDYLVKPFELRELTARCRALLRRPG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L V NL L+ R+V + G + + P+E LL LM + G V + L + +Y Sbjct: 121 ACLGTTLAVANLELDTAGREVRVAGRVVPVPPRELGLLECLMRRVGHVVTKGALEDSLYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVANEEN 222 + E + N LE + LR ++ A + T G GYML + Sbjct: 181 LEAEVTPNALEAVVSRLRRRLAAAHAQVALHTAHGIGYMLTGTSAS 226 >UniRef50_A9IK50 Transcriptional regulatory protein n=7 Tax=Proteobacteria RepID=A9IK50_BORPD Length = 225 Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/217 (42%), Positives = 126/217 (58%), Gaps = 1/217 (0%) Query: 1 MKILIVEDDTLLLQGLILA-AQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDG 59 M IL+VEDD +L + AQ G D A A +L Y+ V+LD+GLP E G Sbjct: 1 MHILLVEDDAMLGMAMQAGLAQKLGATVDWARDAAEARLALAGSPYAAVLLDIGLPGESG 60 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 L L +R + PVL++TARD L+++I GLD GADDY+VKPF L+EL AR+RA+LRR Sbjct: 61 LSVLRALRARYDATPVLLVTARDQLSERIGGLDAGADDYIVKPFQLDELLARLRAVLRRS 120 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 N+ L +TL+ RQV G E+ L+ EY L LM + G + RE L + +Y Sbjct: 121 RNRVTPLLACAGVTLDPATRQVRRDGVEVTLSQHEYLTLLALMERPGRSLTREQLEDAVY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 +NT+ V++H LR K+G + TV G+GY L Sbjct: 181 GGHGTIESNTIAVYVHQLRRKLGDHIVATVHGYGYRL 217 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 132/220 (60%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + + + Y+ DS A + Y L++ D+ +P+ DG Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F+ R+R+ K PV++LTA+DTL DKI GLD GADDY+VKPF +EL ARIR L+RR+ Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + ++ L++ ++QV GE + LT KEY +L LM S + R+ + N +++ Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 +D + ++N ++V I N+R K+ K I T RG GY + Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGYFV 220 >UniRef50_Q5QUA5 Response regulator (CheY, wHTH domains) n=1 Tax=Idiomarina loihiensis RepID=Q5QUA5_IDILO Length = 221 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 79/216 (36%), Positives = 129/216 (59%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++EDD L +G+I GY + AE +L+ + L + DLGLPD + + Sbjct: 1 MRLLLLEDDKTLAEGIIKGLNRMGYMVELAMNLSQAESALKTDQFELAIFDLGLPDGNAV 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + ++R+ +P+++LTA D + K+ L+ GA+DY+VKPF L EL AR+R +R+ N Sbjct: 61 SLIKKLRKAGQPVPIVVLTAWDDVDTKVLALNEGANDYVVKPFELRELEARVRVQVRKAN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q + G+L++++ +Q + + LT E+ LL +L L G V +E L Y Sbjct: 121 LQLNDVINCGDLSVDIASQQCRFQRKLINLTRLEWILLKQLALHVGKIVSKEQLETACYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 WD++ +N+LEVHIH+LR K+ + I T+RG GY+L Sbjct: 181 WDSDNESNSLEVHIHHLRKKLNPSLITTIRGLGYLL 216 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 130/220 (59%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++EDD +L + L G+ C T + + + +VLD+ LPD G+ Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +IR PVL+LTA ++ D++AGL+ GADDYLVKPFA EL AR+ A+ RR Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ S+L VG L L++ R+V EL LTP E++LL LM AG V R++L ++ Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 D E TN +EVHI+ LR K+ + I+TVRG GY+L Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVL 220 >UniRef50_B9CM45 DNA-binding response regulator n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM45_9ACTN Length = 257 Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 132/226 (58%), Gaps = 4/226 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +KIL+VED+ LL + + +GY D + A + + Y L++LDL LP DGL Sbjct: 29 LKILVVEDERELLTSIGEGLEIDGYYVDLIDNGTEALEMAQIEQYDLILLDLNLPGVDGL 88 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R++ VLIL+AR ++ D+I GLD GADDYLVKPFA EL ARIR LLRR Sbjct: 89 DLLRTLRREHSETKVLILSARSSVADRIVGLDAGADDYLVKPFAFGELEARIRNLLRREY 148 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 GE+ L+ G L L+ RQV+ E+ LT KE A+L LM +AG+ V E L + ++ Sbjct: 149 THGETSLVSGELRLDTASRQVFAKDSEVNLTKKETAILEYLMRRAGTVVSSEELLSHAWD 208 Query: 181 WDNEPSTNTLEVHIHNLRDK----VGKARIRTVRGFGYMLVANEEN 222 + +P +N++ VHI ++R K +G I G GY L + ++ Sbjct: 209 SNVDPFSNSVRVHIFSVRKKLREVLGYDPISNKVGEGYYLKEDSDD 254 >UniRef50_A1W7A8 Two component transcriptional regulator, winged helix family n=6 Tax=cellular organisms RepID=A1W7A8_ACISJ Length = 226 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 97/218 (44%), Positives = 136/218 (62%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L + + + + + D+V + A +L A Y+ V+LDL L D DGL Sbjct: 1 MRVLLVEDDEALSEAVCGYLRAKAFVVDAVPSLAQAGAALRAAQYAAVLLDLHLADGDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +IR K V++LTARD ++D+IAGLD GADDYLVKP+ EL AR+RA+ RR N Sbjct: 61 SLLPQIRALKDRPIVIVLTARDQVSDRIAGLDAGADDYLVKPYDPGELLARLRAVERRRN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVH-REILYNDIY 179 L +G+L +++ R QV G + LT KE+ALL R+M +H RE L + +Y Sbjct: 121 AAYVPVLALGDLQIDLSREQVRRAGVPIALTQKEWALL-RVMATRPERIHTRESLQDALY 179 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLV 217 +D+E +NTLEV I LR K+G+ I T+RG GY LV Sbjct: 180 GFDDEADSNTLEVFISRLRRKLGREHIETLRGLGYRLV 217 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 91/216 (42%), Positives = 123/216 (56%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +++L+VEDD L + L A GY D + Y VVLD+GLP DG+ Sbjct: 29 VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 88 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+ +PVLILTARD +DK+ G D GADDY+ KPF LEE+ ARIRALLRR Sbjct: 89 SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +SEL G + L+ +V + G + LT EY LL+ LM +G V R L +Y+ Sbjct: 149 GHAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 208 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 D + +NT+EV + +R K+ I+TVRG GY+L Sbjct: 209 QDFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLL 244 >UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acinetobacter RepID=C0VPI8_9GAMM Length = 219 Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 123/216 (56%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+ EDD + + + +GY+ D V A ++E Y V+LD GLP G Sbjct: 1 MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKASGD 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IRQ+ PV+ +TA+D + D++ GLD+GA+DYLVKPF LEEL AR+R+ LR+H Sbjct: 61 QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L +L L+ + + + + LT KE+ +L +LM K RE L +Y Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W +E +N +EV I+ +R K+G I+TVRG GY + Sbjct: 181 WGDEIESNAIEVFIYQIRKKIGGQYIKTVRGLGYRM 216 >UniRef50_Q20WN2 Two component transcriptional regulator, winged helix family n=4 Tax=Rhizobiales RepID=Q20WN2_RHOPB Length = 221 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 129/219 (58%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD + L Q GY ++V A + Y+ +VLDLGLP DGL Sbjct: 1 MRVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDYAAIVLDLGLPGMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R PVLILTAR + +++ G+D GADDYL KPF +EEL AR+R+++RR Sbjct: 61 AVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q S + VG++TL+ + +V +GG + L+P EY L++ L L G V + L +IY Sbjct: 121 GQACSVISVGDVTLDERQMKVDVGGVPVNLSPLEYRLIAFLFLHRGRVVSQAELSENIYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 ++ +N +EV I +R K+G I T RGFGY++ + Sbjct: 181 NEDAHDSNAIEVLIGRVRKKLGSELIETRRGFGYLVAGS 219 >UniRef50_A5VCP5 Two component transcriptional regulator, winged helix family n=2 Tax=Alphaproteobacteria RepID=A5VCP5_SPHWW Length = 232 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 129/220 (58%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ + + + G+ CD A+ ++ Y +VLDLGLPD DG+ Sbjct: 8 MRLLVVEDNDRMAALIADGLRRRGFVCDIALDLAQADDAMAGAQYDAIVLDLGLPDGDGI 67 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +LA R+ + P +I TAR L D++ GLD GADDY+VKP ++EL ARIRALLRR Sbjct: 68 DWLAGRRKYQQMPPAIIQTARGALEDRVTGLDAGADDYVVKPVEVDELAARIRALLRRPG 127 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + VG L + R + + L+ +E LL LM +AG+ VHR+++ N +Y+ Sbjct: 128 VRTQPVIEVGTLCFDTASRSASIADRNVDLSRREADLLELLMRRAGTVVHRDVIENALYS 187 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYML 216 +++ + N +E + LR K+ +A + TVRG GYML Sbjct: 188 FNDPVTPNAVEAAVSRLRRKLDEAAMPGTLHTVRGVGYML 227 >UniRef50_A0KWE7 Two component transcriptional regulator, winged helix family n=12 Tax=Shewanella RepID=A0KWE7_SHESA Length = 219 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/216 (39%), Positives = 129/216 (59%), Gaps = 1/216 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+I++VED+ LL QG+ L+ G D +++ + A ++ +S +VLDLGLPD +G Sbjct: 1 MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGK 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R + ++P ++LTA K+ LD+GADDYL KPF + EL ARIRA++RR Sbjct: 61 ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +G L++++ R+V + + L+ +E+ LL L AG + R L Y Sbjct: 121 GLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQLEQLTYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 WD E +N++EVHIH+LR K+ I+TVRG GY L Sbjct: 181 WD-EVGSNSIEVHIHHLRKKLANDLIKTVRGIGYTL 215 >UniRef50_Q47EV7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=1 Tax=Dechloromonas aromatica RCB RepID=Q47EV7_DECAR Length = 229 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/218 (39%), Positives = 127/218 (58%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL+VEDD LL GL A + GY D+ A+ L Y LV+LD+GLP DG Sbjct: 1 MHILLVEDDALLADGLARALRHSGYIVDTANDGLSADSLLANEAYDLVILDIGLPGLDGC 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R ++ PVL+L+AR + +++ LD+GADDY+VKP EL AR+RAL+RR Sbjct: 61 EVLQRLRTRRQQTPVLVLSARLAVEERVRLLDLGADDYVVKPVTQAELEARVRALIRRRL 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + E+++G+L L+ ++ W+ L L +E+A L L + V +E L +Y+ Sbjct: 121 GEASPEVVLGSLRLDTVGKRAWLNDTALELNAREWAALEFLAGRVNRIVSKEQLIQALYS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 W +E + N +E + LR K+ +A IRTVRG GY L Sbjct: 181 WQDEITPNAIEKLVSRLRVKLEEAGITIRTVRGLGYYL 218 >UniRef50_Q20YF2 Two component transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=Q20YF2_RHOPB Length = 221 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/217 (41%), Positives = 122/217 (56%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDDT L + + A + GY D ++G Y +LDLGLP DGL Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R K +PVLILTAR + +K+ GL GADDYL KPF +EEL ARI AL+RR + Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +E+ V L L+ +++ G L LT EY L+ LM+ V + L IY Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLV 217 D++ +N +EV ++ LR K+G IRT RG GY L Sbjct: 181 QDDDRDSNVIEVLVNRLRKKIGADAIRTRRGQGYQLA 217 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 131/220 (59%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ +L + E D+ + A + Y ++V+D+ +P DG+ Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA++R T PVL+LTA+D+L DK+ L+ GADDYLVKPF LEEL ARI AL RR+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++++ VG LT+N+ +R V GE + LT KE+ LL L + R+ + + ++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 +D E +N ++V+I NLR K+ I+TVRG GY+L Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVL 220 >UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q48H36_PSE14 Length = 222 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/216 (42%), Positives = 125/216 (57%), Gaps = 1/216 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED L L+ A +GYA D + R A Y L+VLDLGLP GL Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-H 119 L + R K PVLILTAR + +++I GL GADDYL KPF EEL RI+ALLRR H Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + L L L+ GR+ V G ++ LT E+ LL ML G + + L +Y Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYM 215 + +NE +N +EVH+++LR K+G+A + T RG GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRAVVETRRGQGYL 216 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIVEDD L Q L GY D V E G Y +++LD+ LP DG Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +A++R+K ++PVL+LTARD + DKI GLD GADDY+ KPFA EL A +RAL RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +L G+L LN+ + G + + L+ KE++L LM AG V +++L ++ Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVAN 219 ++ N +E ++ LR K+ ARI T+R GY VA+ Sbjct: 181 VESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRFVAD 223 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 124/227 (54%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L L+ ++ Y D V + + +++ Y LV+LD+ LP DG+ Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + +P+L+LTAR+ DK+ GLD GADDY+VKP + EL ARIRALLRR + Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L + L+ V G+ L LTPKEY LL LM + + + ++ Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 +D+ PS NT+ HI LR K+ G I TV G GY L N E Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQNLEK 227 Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +++IV+DD +L + Q G ++ R ++LE+ H L+VLD+ +P +G+ Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 FLARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 +R + LPVL +TA+ + GADDYL KPF EL RI L+R Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616 Query: 120 NN 121 N Sbjct: 617 QN 618 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 132/228 (57%), Gaps = 12/228 (5%) Query: 2 KILIVEDDT----LLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDE 57 +ILIVED+ L QGL+ EGY D R + G Y L++LD+ LP Sbjct: 3 RILIVEDEQKTGRYLQQGLV----EEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFL 58 Query: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 DG ++ +R+ + PVL LTA+D + DK+ GL++GADDYL+KPF EL AR+R LLR Sbjct: 59 DGWQIISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLR 118 Query: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 R +Q + + ++T++M RR V G+++ LT KEY LL L+ + G + R ++ + Sbjct: 119 RARSQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSL 178 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANEE 221 ++N + + TN ++V + LR K+ I TVRG GY+L EE Sbjct: 179 VWNMNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLEIREE 226 >UniRef50_Q1QIC0 Two component transcriptional regulator, winged helix family n=2 Tax=Nitrobacter RepID=Q1QIC0_NITHX Length = 221 Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 79/216 (36%), Positives = 125/216 (57%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++EDD + + L+ + G D V +L+ +++ +LD+GLP+ G Sbjct: 1 MRLLLIEDDAMFGKALVRGLKQNGMTIDWVRNGPDGFAALKRAEHAIALLDVGLPEMSGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R P+LI+TARD + D + GLD+GADDY+VKPF L L ARIRA++RR N Sbjct: 61 DVLKAMRGTSKAPPILIITARDQVEDMVTGLDLGADDYIVKPFELRALLARIRAIVRRVN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + S + +TL+ G E +L+ +E+++L LM + G+ + R + + IY Sbjct: 121 ARSNSVVTSKEITLDPSTYIATFRGIESVLSAREFSVLHALMERPGTILSRSQIESRIYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W E +N ++V IH LR K GK IR +RG G+M+ Sbjct: 181 WSEEVQSNAVDVVIHGLRKKYGKDIIRNIRGAGWMV 216 >UniRef50_A3SUZ3 Two component transcriptional regulator, winged helix family protein n=3 Tax=Rhodobacteraceae RepID=A3SUZ3_9RHOB Length = 218 Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 129/218 (59%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++ED+ L + L + + + + T A+ +L Y +V+LDL LPD DGL Sbjct: 1 MRILLIEDEKALARPLKEHLEADRHIVEWFCTLDEADAALRTLSYDVVLLDLQLPDGDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +FL+++R K P+LILTARD ++D+I GL+ GADDY++KPF L+E+ ARI + RR Sbjct: 61 NFLSKLRAKAIRTPILILTARDKVSDRIEGLNRGADDYVIKPFDLDEVKARIHTVCRRSA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 NQ + + ++ +N+ V + + LT KE+ + L+ + V +E L IY+ Sbjct: 121 NQFAQTVQLHDVVVNLSDHTVMRAEQPVRLTAKEWGVFETLLRRKPQIVPKESLEAAIYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 + E +N +E HI LR K+GK I T RG GY L + Sbjct: 181 YGEEVESNAIEAHISRLRTKLGKDLIATHRGLGYALTS 218 >UniRef50_A6W2Y0 Two component transcriptional regulator, winged helix family n=2 Tax=Oceanospirillales RepID=A6W2Y0_MARMS Length = 223 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 125/218 (57%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD +L + + G+ D T A Q L Y L++LDL LPD G Sbjct: 1 MRILVVEDDRILGEAISQRISRMGHGLDLAQTGLQANQMLALQEYDLMLLDLNLPDMTGN 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+K PV++LTARD + D+I LD+GADDY+ KP EL AR RALLRR Sbjct: 61 QILQTLRKKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALLRRSQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q ++ + GN++LN+ V + G + L +E+ LL + G + +E L IYN Sbjct: 121 GQAQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIEHIYN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 ++ P+++ +E+++ LR + + IRT+RG GY+L Sbjct: 181 FNENPNSSVIEIYVARLRKSLQDSDINIRTIRGLGYLL 218 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 127/220 (57%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++IL+VED+ + L A EG+ D+V R A +++ G Y VVLD+ LP DG Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 AR+R+++ PVL+LTAR +TD+IAGLD GADDYL KPF L+EL AR+RAL RR Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G+L L+ +VW E+ L+ KE+ LL L+ + G R L ++ Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 E +N ++V+I LRDK+ G + T+RG GY L Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242 >UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bacteria RepID=C0A842_9BACT Length = 263 Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 95/229 (41%), Positives = 130/229 (56%), Gaps = 15/229 (6%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYS-----LVVLDLGLPD 56 +IL+VEDD + L EG+ + + A+ SL A H S LV+LD LP Sbjct: 5 RILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASL-AAHPSESPADLVILDWMLPG 63 Query: 57 EDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 DG+ L R+R + +PVL+LTARD + D++ GL+ GADDYL KPFA EL AR+RALL Sbjct: 64 IDGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALL 123 Query: 117 RRHNNQGES-ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 RR E + V +L +N+ R V G + LTP+E+ LLS L L G V R+ L Sbjct: 124 RRFTTPREPWQRSVADLAINLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLA 183 Query: 176 NDIYNWDNE--PSTNTLEVHIHNLRDKVGKAR------IRTVRGFGYML 216 +I+ +N P N ++VHI LR K+ +A + T+RG GYML Sbjct: 184 REIWRENNRATPIDNVIDVHIARLRRKIDEASPGAEKLLHTLRGLGYML 232 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDD +L L+ + + Y D+V R + Y L+++D+GLP +DG+ Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R + +P+L++TA+D D+IAGLD GADDYL KP L EL AR+RALLRR + Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L VGNL L+ QV L LTPKEY LL + G R L ++ Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYML 216 +D+ P +++ H+ LR K+ A I + G GY L Sbjct: 181 FDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRL 220 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 8/123 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 + +L+V+DD + L+ ++L Q G + L + L++LD+ +P G+ Sbjct: 380 VNVLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGI 439 Query: 61 HFLARIRQKK--YTLPVLILTA---RDTLTDKIAGLDVGADDYLVKPFALEELHARIRAL 115 +R +LP++ LTA R+T+ VGADD++ KP + EL RI Sbjct: 440 ELCQSLRSDPEWQSLPIIFLTAHRDRETIQQVFT---VGADDFVTKPVVVPELLTRIINR 496 Query: 116 LRR 118 L R Sbjct: 497 LER 499 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 133/219 (60%), Gaps = 4/219 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +K LIVEDD LLL+ L + EG+ D A Q + Y +++LD+ +P DG+ Sbjct: 3 LKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGV 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + +P+++LTA+ L DK+ GL+ GADDY+ KPF+ +EL R++ +LRR+N Sbjct: 63 KVCKQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYN 121 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E ++++ +LT+++ +V+ G+ + LTPKE+ LL L + RE+L N ++ Sbjct: 122 KVQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWG 181 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR---IRTVRGFGYML 216 ++ +N ++V+I N+R+K+ I T+RG GYML Sbjct: 182 IASDYDSNIVDVYIKNIRNKLEDKPPKLILTIRGRGYML 220 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/216 (42%), Positives = 116/216 (53%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILIVED+ L L + G+ D A E Y ++LDLGLP DGL Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R K PVL+LTAR L +KI GL+ GADDYL KPF + EL AR++AL+RR Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L +G + L+M QVW G + LT E+ +L LM G V R L + IY Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 D + +NT+EV I +R K I TVRG GY + Sbjct: 181 QDFDRDSNTVEVFIGRIRKKTHADLIETVRGLGYRI 216 >UniRef50_C6NUN9 Two component transcriptional regulator, winged helix family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUN9_9GAMM Length = 223 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 138/219 (63%), Gaps = 3/219 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++EDD +L + L++A + G+A D + +AR A +L + +++LDLGLPD +GL Sbjct: 1 MRLLLIEDDVMLGEALVIALREGGHAVDWLRSARTARTALNPPEHEVLLLDLGLPDGEGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R++ +LPV+IL+ARD L +I GLD GADDYLVKPFA EL AR+R L RR Sbjct: 61 DLLRELRERGSSLPVIILSARDALETRIEGLDSGADDYLVKPFASSELLARLRVLQRRQG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEE---LILTPKEYALLSRLMLKAGSPVHREILYND 177 G++ L G + ++ + W G+E L +E+ALLS L+ + G R+ L Sbjct: 121 GSGQAILSNGKIHMDPASFEAWREGQEEQRQRLGQREFALLSTLLSRPGVIFSRQELETR 180 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 +Y W E +N+++ IH+LR K+G I+ +RG G+++ Sbjct: 181 LYPWGEEVESNSIDFLIHSLRRKLGSDAIQNIRGAGWLV 219 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+VEDD + Q + ++ G+ T + +G + ++++D LP+ DGL Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 + +R ++ + PVL+L+A + D+++GL G DDYL KPFA+EEL ARI AL+RR NN Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 E+ L VG L++++ R V GE + L P+E+ LL LM + + R +L D++N+ Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 182 DNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANE 220 P TN ++VHI LR K+ + I+++RG G+ML E Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFMLRVPE 258 >UniRef50_C6RM27 Transcriptional regulatory protein QseB n=1 Tax=Acinetobacter radioresistens SK82 RepID=C6RM27_ACIRA Length = 221 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 125/220 (56%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +++VEDD + + A + + V+TA A+ + L +LDLGLPD+DGL Sbjct: 1 MFVVLVEDDPYIAHSICAALDFLNISVEHVSTASAADYFIRHSAVDLCLLDLGLPDQDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + RQ + P+L+LTAR I L++GADDYL KPF L+EL AR+ AL RRH Sbjct: 61 ELLRKWRQDQIHTPILVLTARIQTRQCIEALNLGADDYLTKPFELDELVARLHALTRRHR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +L+LN ++V+ + + L+ +EY+LL LM + E L + +Y Sbjct: 121 GFSSNVLQFEDLSLNQDTQEVFYQHQAIQLSRREYSLLETLMSHPNQILKNEQLLDKLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANE 220 + + +N L VHI++LR K+ I+T+RG GYM +E Sbjct: 181 YQDSIESNALNVHIYHLRQKLNADFIQTIRGVGYMFKVSE 220 >UniRef50_B2TEA5 Two component transcriptional regulator, winged helix family n=47 Tax=Burkholderia RepID=B2TEA5_BURPP Length = 232 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 129/220 (58%), Gaps = 5/220 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VEDD L + ++ Q E + D AE L Y V+LDL LP G Sbjct: 1 MKLLLVEDDADLARWVMNLMQVEHFVIDWAQNGEQAETLLGLQCYDAVLLDLRLPGIGGK 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 LAR+R+K+ +PVL+LTA + DK+A GADDY+VKPF EL ARI+AL+RR Sbjct: 61 DVLARLRRKRDNVPVLMLTANGSTDDKVACFSAGADDYVVKPFDARELVARIKALIRRQA 120 Query: 120 -NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 ++G+S + G+L R+ + E L L +E+A+L LMLK G V + L + + Sbjct: 121 AGDKGQS-IECGDLRYLFDSREFMLQSEPLPLRRREHAILETLMLKQGKTVSKSTLMDKV 179 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG--KARIRTVRGFGYML 216 + D+EPS + ++++IH LR + A+I T+RG GY+L Sbjct: 180 FTLDDEPSADAIDIYIHRLRKHLAASSAKIMTLRGLGYIL 219 >UniRef50_C1SIE7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE7_9BACT Length = 240 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILIV+D+ L+ L + Y+ D+ + + YSL++LD+ LP DG Sbjct: 14 MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 73 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ T PVL+LTA+ ++D+I GLD G+DDYLVKPFA+ EL AR+RALLRR N Sbjct: 74 CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 133 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY- 179 L V ++ LN V G L LT KEY + L+ V + L ++ Sbjct: 134 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 193 Query: 180 -NWDNEPSTNTLEVHIHNLRDKVGKAR---IRTVRGFGYMLVANEEN 222 +D ++N ++VHI NLR K+G IRT RG GY++ EN Sbjct: 194 DEFDEFNASNFIDVHIKNLRKKIGDENHLIIRTKRGIGYIINDQNEN 240 >UniRef50_Q7P0H4 Probable two-component system response regulator n=1 Tax=Chromobacterium violaceum RepID=Q7P0H4_CHRVO Length = 218 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 85/217 (39%), Positives = 119/217 (54%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +LI+EDD L + L A + E + A+ E + V+LDL LPD GL Sbjct: 1 MHLLIIEDDLDLGRALQAALKAEAATTEWARKLADADALFEPDRFDCVLLDLSLPDGSGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R ++ T+PV+++TA L+DK+AGLD GADDYL KPFA+ E+ +R+RA+ RR Sbjct: 61 ELLRAWRARQITVPVIMITASADLSDKLAGLDDGADDYLCKPFAVSEMVSRVRAVCRRSA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q +G L+L W+ G L L+P+E+ LL L V + +L + Sbjct: 121 RQASEIWSLGALSLKPSAHLAWLDGSALDLSPREFRLLVELARDPSRIVSKTLLGQRLEP 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLV 217 + T+EVH+ NLR K+G RIRTVRG GY V Sbjct: 181 LGDVVDGATIEVHLSNLRRKIGAERIRTVRGVGYQYV 217 >UniRef50_Q89NT7 Two-component response regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89NT7_BRAJA Length = 224 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIVED+ L + + GY D V++A A +++ + Y+ ++LDLGLPD DGL Sbjct: 1 MRLLIVEDNAELSRLVAAGLSAAGYESDIVSSAAEAREAVGSVSYAAMILDLGLPDGDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R++ LPVL+LTAR L D++ GL GADDYL KPFA+EEL AR+ A+LRR Sbjct: 61 SVLRELRRQMEPLPVLVLTARGGLQDRVNGLRSGADDYLAKPFAMEELVARLEAILRRPG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L + NL + RQ+++ + I++ +E ++L L+ + G V ++ + + I+ Sbjct: 121 QLLGRSLRLANLVYDTESRQIFIDDQPRIISAREASVLEILLRRQGRVVPKKNVEDHIFG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 + E ++N +EV++ LR ++ K I T+RG GY++ Sbjct: 181 LEGEVASNAVEVYVSRLRKQLTEHGAKVVIHTIRGVGYLM 220 >UniRef50_Q1D1V9 DNA-binding response regulator n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D1V9_MYXXD Length = 224 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 133/221 (60%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ L+VED+ L + + A ++G++ D+V + A ++ G Y++V+LD LPD DGL Sbjct: 1 MRALLVEDEPELARLVANEATSQGFSVDAVASVTEARSAIHLGAYAIVLLDRRLPDGDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R + VL+++A + +++AGLD GADDY+ KPF +EL ARIR++LRR Sbjct: 61 CLIPELRAMQPEAGVLVISAMGDVPERVAGLDAGADDYMGKPFHADELRARIRSVLRRPA 120 Query: 121 NQGESELI-VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + + + G + ++G RQ+ + G L+L +E +LL+ LM +A V R+ L ++Y Sbjct: 121 QARQLQPVRCGAIEYDLGSRQMTVQGRPLLLRRREASLLAALMRRARRVVQRDTLIKEVY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 +D EPS NTLE HI LR ++ + VRG GY++ Sbjct: 181 GFDEEPSANTLEAHISRLRRRLEDCGAGVVLHPVRGVGYLI 221 >UniRef50_C6BHC0 Two component transcriptional regulator, winged helix family n=58 Tax=Burkholderiaceae RepID=C6BHC0_RALP1 Length = 236 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 91/233 (39%), Positives = 137/233 (58%), Gaps = 14/233 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD + G+ G+ V A + L + LV+LDLGLP DG+ Sbjct: 1 MRILLIEDDRAIASGIHAGLTQAGHRVHVVHDGVFATEQLTRQTHDLVILDLGLPGIDGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L++ R + PVLILTARD L DK+ GL+ GADDYL+KPF + EL AR+ ALLRR N Sbjct: 61 TLLSQFRARDRVTPVLILTARDGLLDKVNGLNAGADDYLLKPFEMLELVARVGALLRRRN 120 Query: 121 NQGE----SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 + E +++VG L ++ R++++ L L+P+E+A+L LML+ G V + L Sbjct: 121 DSTEPAARPDILVGRLRMSGVERRIFVDAAPLELSPREFAVLELLMLRQGRVVSKVQLQE 180 Query: 177 DIYNWDN---EPSTN-----TLEVHIHNLRDKV--GKARIRTVRGFGYMLVAN 219 + ++ + E S + +EV++H +R K+ +A I TVRGFGY+L A Sbjct: 181 HLASFGHAIGEASHDVVGDTAIEVYVHRVRRKIEHSEAEIVTVRGFGYLLQAR 233 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 128/220 (58%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIVED+ L L+ E Y+ D+ A + Y L+VLD+ +P +GL Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R +T PVL+LTA+DT+ D++ GLD+GADDYLVKPFA +EL ARIR L+RR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + +L ++ +V G + + L+ KE+A+L ++ + R+ + ++N Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 +D E +N ++V++ LR KV I TVRG GY+L Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 232 >UniRef50_Q21ZH1 Two component transcriptional regulator, winged helix family n=2 Tax=Comamonadaceae RepID=Q21ZH1_RHOFD Length = 239 Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 130/234 (55%), Gaps = 23/234 (9%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +LIVEDD LL L G+ + A+ LE+ + V+LDLGLP G+ Sbjct: 4 LLIVEDDELLRDALGAQLTQAGHTVTPASDGERAQALLESNRFDGVILDLGLPKVSGMEV 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN-- 120 L +R++ LPVL+LTARD + D++ GL+ GADDYL KPF++ EL AR+ A+LRR Sbjct: 64 LRWLRKRLPALPVLVLTARDGVEDRVQGLNAGADDYLTKPFSMAELQARLGAMLRRARLP 123 Query: 121 -NQGESELIV-GNLTLNMGRR--QVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 G EL+ G L + R Q W+G E L LT +E+ALLS L+ AG + RE + Sbjct: 124 AFGGSLELVTDGARRLRVDARLPQAWLGDEALELTQREWALLSLLVTNAGQVISRE---D 180 Query: 177 DIYNWDNEP------------STNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 + W +EP +N LEV+IH LR K+ + IR VRG GYML Sbjct: 181 VLCAWQSEPGDGTSTGASAGVGSNALEVYIHRLRRKLADSGLNIRNVRGLGYML 234 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 9/225 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQ--TEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDED 58 M+IL+V+DD L+ ILA Q + Y D T AE+ + Y ++LD+GLPD + Sbjct: 27 MRILLVDDDAALMD--ILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIE 84 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 G+ R+RQ+K T P+L+LTA D K+ L+ GADDY+VKPF EEL ARIRAL RR Sbjct: 85 GISLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRR 144 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 NN + L G+L ++ +V+ L +TPKEY +L + + + +++ Sbjct: 145 DNNTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNL 204 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVA 218 +++++ PS + + H+ LR K+ K I+TV G GY L A Sbjct: 205 WSFEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLKA 249 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +K++ ++DD +L L G+ ++ A +LE+ L+++D+ +P+ +GL Sbjct: 512 LKVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGL 571 Query: 61 HFLARIR--QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 +R ++ LP+L L+ D + +VGADD++ K EL R+ L+R Sbjct: 572 EICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKR 631 >UniRef50_C6XSY6 Response regulator receiver n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XSY6_PEDHD Length = 224 Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 135/229 (58%), Gaps = 16/229 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VED+ +L++ + ++ G++CD + AE + Y +VVLD+ LPD G+ Sbjct: 1 MKLLLVEDEPVLVEEMEQYFRSHGFSCDQAVSFSQAEDKILNSRYDVVVLDITLPDGTGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +A IRQ+ ++IL+AR++L+DK+ GLD+GADDYL KPF LEEL ARI AL RR Sbjct: 61 DLIADIRQRDAETGIVILSARNSLSDKLEGLDLGADDYLTKPFFLEELSARINALYRRKT 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALL-------SRLMLKAGSPVHREI 173 +G E++ + T+ + + GE + LT KE+ +L +R++ KA H Sbjct: 121 LRGTVEILFDDFTIEPLAKLFFYLGEPVSLTKKEFEMLVYFVVNKNRVLSKASISEH--- 177 Query: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVA 218 L+ D ++D + +TL +H+ NLR K+ GK I+TV G GY Sbjct: 178 LWGD--HFDQHVNFDTLYMHLTNLRKKLTRLSGKHYIKTVYGIGYKFTC 224 >UniRef50_B9MHH2 Two component transcriptional regulator, winged helix family n=2 Tax=Comamonadaceae RepID=B9MHH2_DIAST Length = 225 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 128/218 (58%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M ILIVED+ L+ G+ + G+ D+ + A+ + + + VLDLGLPD DG+ Sbjct: 1 MHILIVEDNALVASGIQAGLELHGFTSDTAGSVAQAQAHMTSRQFDACVLDLGLPDGDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + R K LPVLILTAR T+ DK+AG G DDYL KPF L+EL R+RALLRR Sbjct: 61 SLLRQWRAKGLALPVLILTARSTIEDKVAGFQTGTDDYLTKPFDLQELVLRLRALLRRAG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +G+ +NM +V G + ++ +E+ALL L+ G + L++ +Y Sbjct: 121 GRTSDLLALGDCQVNMATGEVTRNGVAIDISRREWALLQALLQAHGRVLSAAQLHDSLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 D + +NT+ VH+H+LR K+G I TVRG G+ L A Sbjct: 181 LDQDVGSNTVNVHVHHLRKKLGADVIDTVRGLGFRLGA 218 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD +L L+ + Q + Y D+ R + E+ Y L+++D+GLP DG+ Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R + YT P+L++TA+D +KI GLD GADDYL KP + ELHAR+RALLRR Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L +G L L+ +V L LTPKEY+LL + R + ++ Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYML 216 +D+ P ++++ H+ LR ++ +A I V G GY L Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKL 220 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L V+DD +LL L + G++ ++ + Q+L L++LD+ +P DG+ Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 LARIRQKK------YTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 +R +LP+L LTAR+ ++ GADDY+VKP EL RI L Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFA--AGADDYVVKPIVGPELITRINNRL 520 Query: 117 RR 118 R Sbjct: 521 ER 522 >UniRef50_Q7M9V5 TRANSCRIPTIONAL ACTIVATOR PROTEIN COPR n=1 Tax=Wolinella succinogenes RepID=Q7M9V5_WOLSU Length = 224 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 129/219 (58%), Gaps = 5/219 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VEDD L L A Q E Y D A L Y L++LDL LPD +G+ Sbjct: 1 MKILLVEDDLDLSLVLKKALQKELYTIDIAPCLADASHLLTHFRYDLILLDLMLPDGNGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 F ++R + +P++ILTA+DT+ D++ GLD GADDYL KPF+L EL ARIRA LR Sbjct: 61 TFCQKLRARGEGIPLIILTAKDTIMDRVFGLDSGADDYLAKPFSLAELMARIRARLRNPI 120 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + L + +L ++ ++V GG+ ++LTPKEY LL L L + + EI+ + Sbjct: 121 TPENPLALKIADLEIDQRTKKVTRGGKLILLTPKEYRLLEFLALNQDATLSEEIIKEALL 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGY 214 +++ + +N + V+I+ LR+K+ K I T+RG GY Sbjct: 181 DFEEQTLSNVISVYIYRLRNKIDKDHSVKLIHTLRGIGY 219 >UniRef50_B2V5Y8 Two component transcriptional regulator, winged helix family n=5 Tax=Aquificales RepID=B2V5Y8_SULSY Length = 219 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/216 (39%), Positives = 124/216 (57%), Gaps = 2/216 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + + GY DS + A +E Y +++LDL LPD DGL Sbjct: 1 MKILLVEDNLDLNNTIREVLELNGYVVDSAFDGKEALNFIENSSYDVIILDLMLPDIDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR K PV+ILTA++ DKI GLD+GADDY+ KPF ++EL ARIRA+ RR + Sbjct: 61 EVLKTIRNKGIDTPVIILTAKNQTKDKITGLDLGADDYITKPFDVDELLARIRAIGRRVS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + +++ NL +++ + V G+ + LTPK Y +L +L+ G V E L + + Sbjct: 121 AEKKDIVLIDNLEIDLKNKVVKKSGKFVELTPKLYCILEQLVRNRGKIVSYETLLSKCWE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV--GKARIRTVRGFGY 214 PS T+ +I NLR + K I+T+ G GY Sbjct: 181 ITEVPSRETMRANIKNLRKLIDPDKKIIKTIEGVGY 216 >UniRef50_B2V7S5 Two component transcriptional regulator, winged helix family n=2 Tax=Sulfurihydrogenibium RepID=B2V7S5_SULSY Length = 220 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 136/219 (62%), Gaps = 4/219 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L + + + EG+ D V+ AE+ L +Y ++VLDL LP++DGL Sbjct: 1 MRLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENYEVIVLDLMLPEKDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + PVLILTA+ ++ DKI GL+ GADDYL KPF +EL ARI+AL+RR++ Sbjct: 61 SILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N + + G++ +++ + V + G+++ LT E LL L LK+ + + + +Y Sbjct: 121 NVSKGMVSFGDVEVDLVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYML 216 W+ P +N +EV I LR K+ GK I+TV+G GY+L Sbjct: 181 WEGSPDSNVIEVLISRLRKKLDPKGKY-IKTVKGLGYIL 218 >UniRef50_Q7CWZ7 Two component response regulator n=2 Tax=Alphaproteobacteria RepID=Q7CWZ7_AGRT5 Length = 226 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 127/218 (58%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ +L +GL + GYA D V+ A+ ++ A + LV+LDL LP+ DG+ Sbjct: 1 MRILLVEDNQVLSEGLSALLRGSGYAVDVVSDGASADAAIAAESFDLVILDLNLPEMDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R ++ VLILTAR T +K+ GLD+GADDY++KPF + E AR+R LLRR+ Sbjct: 61 EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L G + ++ R G L + +E ALL L ++AG V +E + + Sbjct: 121 GLRSSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK--ARIRTVRGFGYML 216 +D++ S N +E ++ LR ++ ++T RG GY L Sbjct: 181 FDDDISANAIEQYVSRLRKRLAPHGLTVKTARGIGYYL 218 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 126/219 (57%), Gaps = 4/219 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILIVED+ + + ++ G+ T A A G + L++LDLGLP +DGL Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH-- 119 L ++R + +LP++ILTARD + DKIA + GADDYL KPF EEL R++A LR + Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 120 --NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Q ES L N+ L++ R+V +G L L+ +E+ L G + RE L + Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 ++ +D +P +N ++V++ LR K+G I TVRG GY L Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGNELIETVRGMGYRL 221 >UniRef50_B9JKK7 Two-component response regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JKK7_AGRRK Length = 220 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 122/213 (57%) Query: 4 LIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFL 63 +I ED+ ++ + + + Y +VT A + H+ LV+LDLGLP DGL L Sbjct: 1 MIAEDEPTIVSDMRRCLEDQHYIVSTVTDGEEAWYRGDVEHFDLVILDLGLPKLDGLTVL 60 Query: 64 ARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQG 123 R R + +PV+ILTARD DK+ G+D GADDYL KPF +EEL AR+RAL+RR Q Sbjct: 61 RRWRAGRRGMPVIILTARDGWRDKVDGMDAGADDYLTKPFRMEELLARVRALMRRAAGQS 120 Query: 124 ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWDN 183 L G L L+ +R V G+ + +T EY LL+ L+ AG+ + R + + IY+ + Sbjct: 121 SPILSNGVLELDTRQRTVSFRGQPVQVTALEYRLLAYLLHNAGTVLSRSQIADSIYDEET 180 Query: 184 EPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 E +N LEV + LR K I T RG GY++ Sbjct: 181 ELLSNALEVVVARLRRKFDGTVIETRRGQGYLI 213 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/217 (39%), Positives = 129/217 (59%), Gaps = 5/217 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I VEDD + + +I A EGY + +L + L++LD+ LP + GL Sbjct: 18 ICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEI 77 Query: 63 LARIR--QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR +K +PV++LTA+ T DKI GLD GADDY++KPF++ EL AR+RALLRR + Sbjct: 78 LKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSS 137 Query: 121 -NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 ++ +S++I N+ L+ +R V + GE + LT KE+ LL L+ G + RE + I+ Sbjct: 138 LSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKIW 197 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKAR--IRTVRGFGY 214 +D E + T++VHI LR K+ A I+T+R GY Sbjct: 198 GFDFEGESRTVDVHIATLRQKLKNASSIIKTIRNLGY 234 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 134/223 (60%), Gaps = 10/223 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++I IVED+ + + L + + EG+ + A + + G++ LV+LD+ LP DG+ Sbjct: 5 VRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGM 64 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 R+R+ +LP+++LTA+D + DK+AGLD+GADDY+ KPFA+EEL ARIR LR+H Sbjct: 65 TICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHV 123 Query: 120 -NNQG---ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 +N G E L V NL + R +V + GE + LT KEY+LL +M + + R+ + Sbjct: 124 PDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQIL 183 Query: 176 NDIYNWDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGY 214 ++ +D TN ++V+I LR D+ + I TVRG GY Sbjct: 184 EKVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGY 226 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 128/221 (57%), Gaps = 10/221 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLE---AGHYSLVVLDLGLPDE 57 M+IL+ ED+ LL+ L EG+ SV T+ +L+ +G + ++LD+ LP Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGH---SVITSMNGVDALDIAMSGEFDALLLDVMLPGM 57 Query: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 DG R+R K +P+L+LTARD +D I GLD GADDY+ KPF+ EL AR+RA+ R Sbjct: 58 DGFEVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTR 117 Query: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 R S L+ +LTL+ +V+ G + LT E+ LL +LM AG PV R+ L + Sbjct: 118 RTGPHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGN 177 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKV---GKAR-IRTVRGFGY 214 ++ +D NTL+ I LR KV G + I+TVRGFGY Sbjct: 178 VWGYDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_A7VHB9 Putative uncharacterized protein n=5 Tax=Firmicutes RepID=A7VHB9_9CLOT Length = 236 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 133/219 (60%), Gaps = 5/219 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I IVEDD + + + A + GY + A+ + L++LD+ LPD+DGL Sbjct: 17 IYIVEDDMNIQEIEMFALKNTGYVTEGFANAKSFFSRMTEKIPDLILLDIMLPDQDGLEI 76 Query: 63 LARIRQKKYTL--PVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + ++R++ T+ P++++TA+ T DK+ GLD+GADDYL KPF + EL +R++ALLRR Sbjct: 77 VRKLRERPETVRVPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRRSK 136 Query: 121 NQGESELI-VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + E +++ + N+TL+ +R V + LT KE+ LL LM+ AG + RE++ D++ Sbjct: 137 SIQEDQILRLKNVTLDSEKRIVHVNDIPCELTFKEFELLKLLMINAGIVLRREVIMMDVW 196 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 D E + TL++HI LR K+G A I+TVR GY + Sbjct: 197 GTDYEGESRTLDMHIKTLRQKLGDAGNMIKTVRNVGYKM 235 >UniRef50_C9B4F3 Two component transcriptional regulator n=2 Tax=Enterococcus faecium RepID=C9B4F3_ENTFC Length = 222 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 131/218 (60%), Gaps = 4/218 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ + + L+ + GY SV T + A +E + L +LD+ LP+ DG Sbjct: 5 MKILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGY 64 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 A +R+ Y LPV+ LTA+D ++D+++GL GA+DY+ KPF LEEL AR+ +LRR+ Sbjct: 65 EVFAYMRE--YDLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVLRRNG 122 Query: 121 NQGESELIVGN-LTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 ++L+ + +N R V + + LTPKEY LL L+ + RE +Y I+ Sbjct: 123 KSSSNKLLKWKYIEINEKTRAVTARNQAVSLTPKEYELLLYLIRNKAIILPREKIYQKIW 182 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKAR-IRTVRGFGYML 216 + EP++ TL++HI +R+K+ + +RT+ G GY+L Sbjct: 183 GREEEPNSRTLDLHIQRIRNKLQLGQDLRTIYGVGYLL 220 >UniRef50_Q92V41 Putative two-component response regulator protein n=1 Tax=Sinorhizobium meliloti RepID=Q92V41_RHIME Length = 223 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 129/220 (58%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED L + + G+ D V+T R AE ++ A + LV+LDLGLPD DGL Sbjct: 1 MRLLLVEDSPRLTELINETMHDAGWRLDGVSTLRDAEAAIAAREHDLVLLDLGLPDGDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR++ LPVLI+TAR ++ ++IAGLD GADDYLVKPF EL +R RA+LRR+ Sbjct: 61 QLLQWIRREHVGLPVLIITARGSVDERIAGLDAGADDYLVKPFHHRELLSRCRAMLRRNP 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N + L G L + ++ G L L P+E +L+ L+ + G V + L + Sbjct: 121 NAIQPVLEAGALRYDPATAELTCEGAVLPLPPRERSLIEILLREVGRVVPKRRLETALSE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216 + E S+N LE+ + +R ++ +I TVRG GY+L Sbjct: 181 YGQELSSNALELAVSRVRKRLQSVETGVQIETVRGIGYLL 220 >UniRef50_C1DUD1 Transcriptional activator protein IrlR n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUD1_SULAA Length = 222 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 123/219 (56%), Gaps = 3/219 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+LI+ED+ L + + + E + D V T + A L Y ++LDL LPD G Sbjct: 1 MKVLIIEDEKKLGKLIKKGLEEESFIVDLVHTGKEALDFLTTQSYDAIILDLMLPDISGK 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +IR PV++LTA+D + DKI LD GADDY+ KPF +EL ARIRA++RR Sbjct: 61 DVLIKIRNSSIKTPVIVLTAKDEVKDKIELLDAGADDYITKPFDFDELLARIRAVVRRDK 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + S + +G+L +++ + V G + L+ KEY LL + G + ++ L N +Y+ Sbjct: 121 DIKSSVISIGDLEIDLSKSTVKKSGNLIKLSSKEYLLLRYFIFNRGKILTKDNLINAVYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYML 216 E ++N LEV I LR K+ I+++RG GY+ Sbjct: 181 LSFELNSNALEVLISRLRSKIEDENHKYIKSIRGLGYIF 219 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 125/222 (56%), Gaps = 1/222 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L L Q +GYA D + R A ++ Y L++LDLGLP GL Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA+ R PVLILTAR + ++I GL GADDYL KPF EEL RI+ALLRR Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + +L L L+ R+ V G ++ LT E+ LL ML + + L +Y Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 + + E +N LEVH+++LR K+G++ I T RG GY+ + E Sbjct: 181 DGETERDSNVLEVHVNHLRRKLGRSVIETRRGQGYIYAGSGE 222 >UniRef50_C4ZLE7 Two component transcriptional regulator, winged helix family n=1 Tax=Thauera sp. MZ1T RepID=C4ZLE7_THASP Length = 225 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 128/224 (57%), Gaps = 10/224 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L +G+ + +G + A++ L+ Y V+LD+GLP G Sbjct: 1 MRLLLVEDDPALAEGIAEFLRGQGDEVEVEGDGMRADRLLQNNGYDFVLLDVGLPGLGGY 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + RIR++ +PV+++TARD L D+I GLD+GADDYLVKPF L EL AR+RA+ RR Sbjct: 61 ELVRRIRKRGQRMPVIVITARDALDDRIYGLDLGADDYLVKPFELAELSARMRAVQRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 G + L G L L++ R + G + L+ +E+ +L L+ G V RE N Sbjct: 121 GAG-ARLAFGALALDLDGRLAELDGAPMTLSGREWEVLEALVRADGRTVTRE-------N 172 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR--IRTVRGFGYMLVANEEN 222 + S N LEV I LR +V A IRTVRGFGY L ++E Sbjct: 173 LQGDGSGNALEVCISRLRPRVEAAGLLIRTVRGFGYRLERSKEQ 216 >UniRef50_Q3ID21 DNA-binding response regulator of two-component system n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3ID21_PSEHT Length = 223 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 129/216 (59%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L+VEDD ++ + +G A + V+T A +++ ++ L +LDL LPD +G+ Sbjct: 1 MFVLLVEDDDVIADAICTYLTHQGLAVEHVSTLSAATTYMQSSNFDLCILDLNLPDGNGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++L+ +R +++LPVLILTA +T+ DK+ GL GADDYLVKPF L EL AR+ +L RR + Sbjct: 61 NWLSWLRDSRFSLPVLILTASNTIDDKVIGLKKGADDYLVKPFDLRELLARLLSLKRRAS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ + + G L ++ + + + G + L+ E LL + + + L N +Y Sbjct: 121 DRLSNTITHGALQYDLEQHKALLNGTLVCLSRNEDLLLQTFLNSPQQILTQSQLKNVLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 ++ ++N L VHI NLR K+G I T+RG G+ L Sbjct: 181 VCDDVASNALNVHIFNLRKKLGAPAIETIRGLGFRL 216 >UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobium/Agrobacterium group RepID=B9K181_AGRVS Length = 218 Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 125/216 (57%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD +L L A + Y D + +++ Y++V+LD+ LP G Sbjct: 1 MRILVVEDDVILGSSLKKAFEKHAYGVDLMRDGESGLLAIQDNDYAVVILDVNLPKASGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R +PVL+LTA D++ ++ GLD GADDYLVKPF L+EL AR+RAL RR+ Sbjct: 61 EVVRTLRASGNKVPVLLLTALDSIRSRVEGLDEGADDYLVKPFDLDELLARVRALARRYE 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + E+ + GN+ L+ G L + KE+ LL LM +AG V + + +Y+ Sbjct: 121 GRTETLIRCGNVELDPSAMIARQNGTPLHVAGKEFHLLKLLMERAGRYVTKSDIEYALYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 +NT+EV I++LR K+G I+++RG GYM+ Sbjct: 181 ISAMVESNTIEVTIYSLRKKLGADFIKSIRGVGYMV 216 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 131/226 (57%), Gaps = 4/226 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 + ++++ED+ + + L + EG + R A Q +E LV+LDL LPD DG+ Sbjct: 17 LHVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGM 76 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R LP++ILTAR + +++ GL +GADDY+VKPF+ +EL AR+ A+ RR Sbjct: 77 VVCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAG 136 Query: 121 -NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 ++ + L V L+LN+ R+V + G + LTP E+ALL + M R+ L + ++ Sbjct: 137 ISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVW 196 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLVANEEN 222 + +N +EVHI NLR+K+G + IRTV G GY L ++E Sbjct: 197 GFTYVGDSNIVEVHISNLREKIGDHERKLIRTVYGVGYTLRPDDET 242 >UniRef50_B4SNE1 Two component transcriptional regulator, winged helix family n=13 Tax=Proteobacteria RepID=B4SNE1_STRM5 Length = 224 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL++ED+ L L A Q E Y D T +A ++ G + LV+LD LPD DGL Sbjct: 1 MHILLIEDEAELAATLKSALQRERYVVDLANTLALAREAALYGSHDLVLLDRTLPDGDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++ +R++ +P+++L+A L D+IAGLD GADDYL KPFALEEL ARIRA RR + Sbjct: 61 GLISLLRERNPGVPIIVLSALGQLPDRIAGLDEGADDYLAKPFALEELFARIRAAGRRPS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + +G L + + +GG+ L L +E +L+ L + G V RE + +Y Sbjct: 121 GMQVELVSIGRLVFDPASGEASVGGQRLELPRREIRVLTALARRLGRTVLRESIEMAVYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYML 216 +D+ +NTL+ H+ LR K+ A I +RG GY++ Sbjct: 181 FDDGIHSNTLDSHVSRLRRKLADADARVEIHAIRGVGYLM 220 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 128/220 (58%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VED+ + ++ + +GY + + Y ++VLD+ LP DGL Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ T+PV+++TAR L +++ GL++GADDYL KPF L+EL ARI+AL RR + Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + S + VG+L +N+ R+V GE + LT +E+ LL LM G + R + ++ Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 +D +PSTN ++V + LR KV I TVRG GY + Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236 >UniRef50_Q2RPG3 Two component transcriptional regulator, winged helix family n=8 Tax=Alphaproteobacteria RepID=Q2RPG3_RHORT Length = 229 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 124/219 (56%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L L + G+A D A E + VVLDLGLP DG+ Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R +PVLILTAR +K+AG + GADDY+ KPF +EE+ R++AL+RR Sbjct: 61 GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +EL+ G L L+ + + G L LT +EY +L+ L+L+ G V R + + +Y+ Sbjct: 121 GHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 D++ +N ++V + LR K+G I TVRG GY L A Sbjct: 181 RDSDRDSNVIDVLVGRLRRKLGAPLIHTVRGLGYRLEAE 219 >UniRef50_Q2P6R9 Two-component system regulatory protein n=28 Tax=Proteobacteria RepID=Q2P6R9_XANOM Length = 233 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L ++ + G+A D A L + LVVLD+GLP DGL Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA +R++ T PVL+LTARD + D++ LDVGADDYL KPF E AR R LLRR+ Sbjct: 61 RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q + +G + + + G + L +EY L L+ + G V ++ + N ++ Sbjct: 121 GQASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 +D++ N +E+++ LR K+ A RI TVRG GY L Sbjct: 181 FDDDAGPNAIELYVGRLRRKLAAAPLRIVTVRGAGYKL 218 >UniRef50_C8SKU4 Two component transcriptional regulator, winged helix family n=4 Tax=Rhizobiales RepID=C8SKU4_9RHIZ Length = 371 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++ED + +G+A + A Y LV+LD+ LPD +GL Sbjct: 1 MRILLIEDSEDFGSAVREHMIADGHAVEWAKDLSEARYHASGIPYGLVLLDINLPDGNGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +L +R+ + + PV+I+TAR T+ D+I GL+ GA DYLVKPF EL ARI A+ R H Sbjct: 61 DYLREMRKGRDSTPVIIVTARHTVEDRIEGLNAGAADYLVKPFDPRELSARIHAVARSHG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N + VG L++N R+V + G+ + LT +E+A+L ++ + G+ V + + ++ + Sbjct: 121 NFPKP-YSVGALSINAAERRVALDGQPVNLTAREWAILDCVLSRPGAVVLKRKIEEELLS 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 +E +NT+EV++ LR K+G+ RI T+RG GY V N Sbjct: 180 LGSESESNTVEVYVSRLRKKIGRDRIATLRGLGYSFVEESRN 221 >UniRef50_A8F0H8 Transcriptional activator protein CzcR n=24 Tax=Alphaproteobacteria RepID=A8F0H8_RICM5 Length = 243 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++E + + + L +EG CD + + + G Y LV+LDL LPD +G Sbjct: 7 MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 66 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R K P+LIL++ KI G GADDYL KPF EEL ARI+A++RR Sbjct: 67 EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 126 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S +++N+ R V + G+++ LT KEYA+L L+L+ G+ + +E+ N +Y+ Sbjct: 127 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 186 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEE 221 +EP ++V I LR K+ G+ I TV G GYML +E Sbjct: 187 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKEYDE 232 >UniRef50_UPI0001745DFF Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745DFF Length = 231 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L +ED T L + + A G+A D ++A Q E Y V+LD+ LP + GL Sbjct: 1 MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA RQ++ PVL+LTA D++ D++ GL GADDYL+KPFA+ EL AR+ AL+RR + Sbjct: 61 ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + +S + VG L ++ R V G + LT +E+ALL L G RE + +Y+ Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 + P +N ++ +++LR K+ I T RG GY+L Sbjct: 181 ETDSPLSNAVDTAVYSLRRKLSPPGVPQLIHTRRGLGYLL 220 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD LL Q + A + Y D + + +Y L++LD+ LP DG+ Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++RQ+ Y + +L+LTA+DT TDK+ GLD GADDY+VKPF +EL ARIRALLRR N Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G+L L+ +V L LT KE++LL + R + + +++ Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 181 WDNEPS-TNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVA 218 + +P NT++ HI +LR K+ A I TV G GY L A Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKA 224 >UniRef50_B0C620 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=B0C620_ACAM1 Length = 226 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILI ED+ ++ L + G+ A + + L++LDLGLP +DGL Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL--RRH 119 L IR + LP+++LTARD + D + L+ GA+DY+ KPF EEL ARI+ L RR Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 120 NNQGESE--LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Q SE L VGNL+L++ RQ W+G + L+ KE+ L L+ + +E L N Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 ++ +D +P +N +EV+I +LR K G I TVRG GY L Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRKFGSQYIETVRGMGYRL 221 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD + L A G+ D + Y +++D+ LP DGL Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R + PVLIL+A+ +++D+++GL++G DDYL KPF L EL AR+ +L+RR Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 -NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 NQ +L G+L L++ R+V+ G EE L P+E+ALL LM G V R + +++ Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 180 NWDNEPSTNTLEVHIHNLRDKV---GKAR-IRTVRGFGYMLVAN 219 ++ P+TN +EVHI LR+K+ K R ++T R GY LV + Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYALVED 255 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 14/226 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD + + L E Y D T + Q + + +Y L++LD+ LP+ DG+ Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F ++R ++YTLPVL +TA D ++KIAGL+ GADDY+ KPF LEEL AR+RALLRR Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRR-- 118 Query: 121 NQGESELIVGNLT-----LNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 G++ +++ L L + R++ +L LTPKE+A+L + RE + Sbjct: 119 --GKTSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAII 176 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDK---VGKAR--IRTVRGFGYML 216 ++++++ + P T+ H+ LR K VG I TV G GY L Sbjct: 177 DNLWSYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRL 222 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ + A Q E +A D A + +VLD+ LP DGL Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++RQ+K PVL+L+AR + +++ GL+ GADDYL KPFAL EL AR+R++ RR N Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L V +LTL+ RQ GG LT +EY LL LM G R + +++ Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 +D +P TN ++V+I LR+KV + + TVR GY++ Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVM 220 >UniRef50_Q6MHZ0 Two component response regulator n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHZ0_BDEBA Length = 224 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 131/228 (57%), Gaps = 13/228 (5%) Query: 1 MKILIVEDD----TLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPD 56 M+ L+VEDD T++ QGL + EG D + R A + + HY ++VLDL LP+ Sbjct: 1 MRCLVVEDDNEIATIVKQGL---GELEG-DVDVESNGRRAFEKAQTNHYDIIVLDLMLPE 56 Query: 57 EDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 DG F +R+K+ P+LIL+A L D++ GL +G DDYL KPFA+ EL R++ LL Sbjct: 57 MDGYTFAKSLREKEINTPILILSALRELDDRLKGLSMGGDDYLTKPFAMAELQIRVKNLL 116 Query: 117 RRHNNQGE-SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 +R E ++L+ +L LN R V G +L L +E+ LL M + ++ + Sbjct: 117 KRSQKASEVTQLVFQDLKLNRLNRDVVRAGRKLDLQEREFVLLDLFMSNPNKIIGKQTIL 176 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVAN 219 +++N+D +P TN ++V + LR+K+ K I TVRG GY+L ++ Sbjct: 177 KEVWNYDFDPQTNVVDVLVCRLRNKLEKDFPTRLIYTVRGVGYVLKSS 224 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDE--D 58 M+ILIVED+ L + + + EGYA D + Y +++D +P + D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 GL L ++R+ + P ++LTA + KI GLD GADDYL KPFA++EL AR+RA+LRR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + L VG L ++ R V +++ LT KEYALL LM +G + +E + + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216 +N+D + NT+E +I LR K+ + I+TVRG GY L Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRL 222 >UniRef50_C9YE22 Response regulator mprA n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YE22_9BURK Length = 248 Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 130/229 (56%), Gaps = 19/229 (8%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +LIVEDD LL GL G++ S + A+ LE+ + VVLDLGLP DG+ Sbjct: 19 LLIVEDDELLRDGLCAQLVHAGHSVSSASDGAQAQGLLESTRFDGVVLDLGLPVVDGIAV 78 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN-- 120 L IRQ+ LPVLILTARD + D++ GL+ GADDYL KPF + EL AR++A+LRR Sbjct: 79 LQWIRQRLAALPVLILTARDGVDDRVQGLNAGADDYLTKPFNMAELLARLQAMLRRSRLP 138 Query: 121 -NQGESELIVG---NLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 G E+ NL L+ W+G + + LT +E++LLS L+ G V RE Sbjct: 139 AFGGSLEVQSTHSRNLRLDPVLPLAWLGDDPMELTHREWSLLSLLVNNMGQVVGRE---- 194 Query: 177 DIYN-WDNEP------STNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 D+ + W P +N LEV++H LR K+ + IR VRG GYML Sbjct: 195 DVLSVWQTAPLEGGAAGSNALEVYVHRLRRKLTDSGLNIRNVRGLGYML 243 >UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firmicutes RepID=C6LFE5_9FIRM Length = 247 Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 133/228 (58%), Gaps = 15/228 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VED+ L + + L EGY R A + +G ++L++LD+ LP +GL Sbjct: 11 ILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLNGLEV 70 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 L R++Q+K T PV++LTARD + DK+AGLD GA DY+ KPFA+EEL ARIR L+ H + Sbjct: 71 LRRLQQEKPT-PVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGDT 129 Query: 123 -------GESELIV---GNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHRE 172 E E V G L L+ R QV G E+ILT +E+ +L L+ + RE Sbjct: 130 RRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTRE 189 Query: 173 ILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYML 216 +L N + +D TN ++V+I LR K+ +A I+TVRG GY++ Sbjct: 190 VLLNRVCGYDYVGETNVVDVYIRFLRAKIDEAFQIKMIQTVRGVGYVI 237 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++EDD + + + G+A DS R G YS ++D+ LP+ DGL Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-H 119 + +R PVLIL+A+ ++ D+I GL G DDY++KPF+ EL R++AL+RR Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + ++ L +G L +++ R+QV G ++ L KEYALL + AG+ + + + +Y Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 ++ +P TN ++V + LR K+ G+ I+T+RG GY+L Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVL 221 >UniRef50_A6EUI4 DNA-binding heavy metal response regulator, putative n=1 Tax=Marinobacter algicola DG893 RepID=A6EUI4_9ALTE Length = 222 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 120/217 (55%), Gaps = 1/217 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+LIVED+ +L + + + E + D + A +E Y ++LD+GLPDE+GL Sbjct: 1 MKVLIVEDNAVLAEKISVWLAKENFTVDVAQNGKEANFFVETSSYQAIILDIGLPDENGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + + R +LILTAR T+++ GL+ GADDYL KPF +EL AR+ A++RR + Sbjct: 61 SLMQKWRSNGKDEAILILTARSNWTERVEGLNAGADDYLPKPFEFDELKARLSAIIRRKD 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGG-EELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + ++ V LN R + +E LT EY LL + ++ L +Y Sbjct: 121 GRTTDKIAVDGFLLNSTYRTLTTPDHKEFRLTATEYRLLQCFLRSPDRVFSQDDLVESLY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 N + P+ N ++V+I LR +GK+RI+T+RG GY Sbjct: 181 NIERCPTRNVVQVYIARLRKILGKSRIKTLRGQGYYF 217 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++ED+ L L+ + +GYA D + Y L++LDL LP DGL Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R L +LILTARD +++ GLD GADDYL+KPF EL ARIRALLRR Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +L L+ + VW+ + L LT KE+A+LS LM G + +E+L +++ Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 181 WDNEPSTNTLEVHIH----NLRDKVGKAR-IRTVRGFGYML 216 P TNT+ VHI+ LRD + R I TV G GY L Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VEDD +L++ L T Y D V M Y L++LD+ LP+ DG+ Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R R + YT+P+L+LTA+D +T K+ GLD GADDY+VKPF EL ARIRALLRR + Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N L G+L LN +V G L LT EY LL L+ E L + +++ Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVA 218 ++ PS T+ H+ LR K+ A I T+ G GY L A Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKA 223 Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K++I++DD L+ L + G+ ++ + L+A +VLD+ +P +G Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 FLARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 +R + LPVL L+ T + VG DDYL KP EL RI L+R Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQR 645 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L Q ++ + Y D + A +Y L++LD+ LP D + Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+RQ T P+++L+A T D +AGLD GADDY++KP +E L AR+RALLRR+ Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L GNL ++ +V G+ L L+PKEY LL LM ++ + ++ Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 + + P+ T++ H+ LR K+ KA I TV GFGY L Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRL 220 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 129/218 (59%), Gaps = 5/218 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VED+ L + L L + EG++ D + Y L++LD+ LP+ G+ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 RIR+ K +P++++TAR + D + GLD GA+DYL KPFA+EEL ARIR LLR+ ++ Sbjct: 73 CRRIRETK-DVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 E++VG L + R+V++ EE++LTP+E+ LL ++ V RE + ++ +D Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191 Query: 183 NEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 +TN ++V+I LR+K+ I TVRG GY L Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTL 229 >UniRef50_A5F0A5 Transcriptional regulator n=77 Tax=Proteobacteria RepID=A5F0A5_VIBC3 Length = 245 Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 84/217 (38%), Positives = 128/217 (58%), Gaps = 4/217 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VEDD L GL+++ + GY C T +Q + LV+LD LPD D + Sbjct: 32 LLLVEDDKNLADGLLVSLEQAGYDCLHAETIADVKQHWDKA--DLVILDRQLPDGDSVQH 89 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN- 121 L ++ K +PV++LTA T+ DK+ GLD GA+DYL KPFA EL ARIRA LR ++ Sbjct: 90 LMDWKKIK-DIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRSPDSG 148 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 Q +S+++ NLT++ R+V+ GE + LT E+ LL L G R+ L + ++ + Sbjct: 149 QDDSKVVTSNLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDHVWGY 208 Query: 182 DNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 ++ P+T T++ H+ LR K+ I T+RG GY + A Sbjct: 209 NHFPTTRTVDTHVLQLRQKLPGLEIETLRGVGYKMKA 245 >UniRef50_Q1LIY7 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderiales RepID=Q1LIY7_RALME Length = 221 Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 127/220 (57%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIVED L + L + Q+EGYACD+ A + L + Y ++LDL LP DG Sbjct: 1 MRVLIVEDSQTLAEALSQSLQSEGYACDTAADGVSALKFLASYRYDAIILDLMLPRLDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + ++ + PVL+L+AR+ L D++ LD GADDYL KPF L EL AR+RAL+RR Sbjct: 61 GVLRALGREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVRRPP 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G+L ++ R +L LTPKEY LL L+ + G+ + R ++ +Y+ Sbjct: 121 QRDVPVLRHGDLEVDPRSRIARFKCIDLGLTPKEYGLLDLLLRRRGATLSRSQIFEHLYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 ++ S +EV + LR K+ + I T RGFGY+L Sbjct: 181 SRSDASDKVVEVIVSTLRTKLAQCGLDELIVTRRGFGYIL 220 >UniRef50_A8UXR4 Two component transcriptional regulator, winged helix family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UXR4_9AQUI Length = 225 Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 126/222 (56%), Gaps = 12/222 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIVEDD L+ L + EG+ +T A +S E +V+LDL LPD DG Sbjct: 4 KILIVEDDPLIADMLKRYLEKEGFKTYWDSTGAEAVKSFETLKPDVVILDLMLPDTDGFE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L LILTARD DKI GL++GADDY+ KPF + EL AR++ALLRR Sbjct: 64 LCKLFSSTDSML--LILTARDADEDKIVGLELGADDYITKPFNMRELLARVKALLRRRKK 121 Query: 122 ---QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 GE+ L VG L ++ G +V + G + LTPKE+ +L +L+ K G V RE + ++I Sbjct: 122 LSLSGET-LRVGELEIHTGEMKVLLKGRLVDLTPKEFLILKKLLSKRGKVVSREEIVSEI 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK------ARIRTVRGFGY 214 Y+ D ++ +I+ +R K+ + RI+TVRGFGY Sbjct: 181 YSGDIPYYERIVDTYIYRIRTKLMEIERSYAERIKTVRGFGY 222 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 129/227 (56%), Gaps = 12/227 (5%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGH---YSLVVLDLGLPDEDG 59 IL+VEDD L Q L ++EGY +VT AR +LE G L++LDL LP G Sbjct: 5 ILVVEDDETLAQVLRKTLESEGY---TVTLARDGRAALELGREPGLQLIILDLMLPRMSG 61 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR- 118 L R+R + P+++LTAR TDK+ GL +GADDYL KPF ++EL ARI A+LRR Sbjct: 62 LEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRT 121 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 H ++ + VG+L ++ R V ++L L+ +E+ +L L AG V RE +Y ++ Sbjct: 122 HQSKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEV 181 Query: 179 YNWDNEPSTNTLEVHIHNLRDKV----GKAR-IRTVRGFGYMLVANE 220 + +D + T++ HI LR K+ + R I TV G GY V E Sbjct: 182 WGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVVPE 228 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L+VED+ + + + + + Q+ + +++LD+ LP DGL Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ+ P+++LTAR+ L D++ GLD+GADDYL KPF +EELHARI+ALLRRH Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + VG L L+ R + G+ + LT +E++LL LM + R L ++ Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 181 WDNEPSTNTLEVHIHNLR------DKVGK--ARIRTVRGFGYML 216 +D +P TN ++V I +R +K GK I ++RG GY L Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >UniRef50_B4EVF9 Two-component response regulator n=19 Tax=Enterobacteriaceae RepID=B4EVF9_PROMH Length = 224 Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 127/218 (58%), Gaps = 4/218 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+ED+ LL L + + G+ D+ A+ A+ + + ++DLGLPDEDG+ Sbjct: 1 MRILIIEDNILLRHHLSVQFRDAGHQVDAAQDAKEADHFIAESTPDVAIVDLGLPDEDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + R R+ T+P+++LTAR++ +K+ L+ GADDY+ KPF EE+ AR++AL+RR+ Sbjct: 61 SLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMRRNM 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L + L++ R++ + GE++ LT EY +L LM V +++L +Y Sbjct: 121 GIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQLYP 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGY 214 + ++T++V + LR K+ + I TVRG GY Sbjct: 181 DAEQRESHTIDVLMGRLRKKILQKYDNDVIVTVRGQGY 218 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 126/222 (56%), Gaps = 13/222 (5%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGH----YSLVVLDLGLPD 56 M+IL+V+DD + L Q EGY ++ + +A A H +SL++LD LP Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVA-----AAHNCYAFSLLILDWMLPG 55 Query: 57 EDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 + G+ F +R++ P+L+LTARD + D+I GLD GADDYL KPF EEL A +RALL Sbjct: 56 KSGVEFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALL 115 Query: 117 RRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 RR + + + +L ++ R V G L LTPKEYA+L L+ AG V R L Sbjct: 116 RRVELAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAE 175 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGY 214 I++ D N ++VH+ NLR K+ A I+TVRG G+ Sbjct: 176 HIWHADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGF 217 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 129/219 (58%), Gaps = 9/219 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGH---YSLVVLDLGLPDED 58 +ILIV+D+ + L + EGY V+ A E+ L+ + + LV+LD+ LP +D Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGY---EVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKD 64 Query: 59 GLHFLARIRQKKYT-LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 G L I KKYT PV++LTARD D++ G ++GADDY+ KPF + L AR+++LLR Sbjct: 65 GWSILREI--KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLR 122 Query: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + NN ES + +G+L +N V E+ L PKEY LL L+ + RE L N+ Sbjct: 123 KTNNMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNE 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 ++ +D T++ HI NLR K+GK I+T+RG GY L Sbjct: 183 VWGYDFLGDDRTIDTHIKNLRKKIGKNAIKTIRGIGYKL 221 >UniRef50_UPI00016C05FB hypothetical protein Epulo_07020 n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C05FB Length = 222 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 124/218 (56%), Gaps = 5/218 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI ED+ L L+ Q Y+ D V A +E G+Y V+LDL +P +G+ Sbjct: 1 MRILICEDEKQLADILVAMLQYNNYSVDVVGDGVSAVDYIETGNYDGVILDLMMPKLNGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +IR ++PV+IL+A+ + DKI GLD GA+DYL KPF EL ARIRA+ R+ Sbjct: 61 EVLKKIRTAGMSVPVIILSAKSQIEDKIVGLDCGANDYLAKPFDAGELLARIRAMTRKA- 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q L++GN TLN+ ++ + ++ L KE+ +L LM + + V + L I+ Sbjct: 120 TQNNIFLMMGNATLNVANFELVVADGKIKLPNKEFQILEMLMSRKDAVVSVDKLAERIWG 179 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGY 214 ++NE T+ V+I NLR K+ +I+ VRG GY Sbjct: 180 YENEVDITTIWVYISNLRKKLVALSATVQIKVVRGVGY 217 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 134/222 (60%), Gaps = 12/222 (5%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYAC----DSVTTARMAEQSLEAGHYSLVVLDLGLPD 56 M++LIVED+ +++ L +GY+C D T RMA + +V+LD+ LP Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEE----DVDVVLLDIMLPG 56 Query: 57 EDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 DG L R+R ++ LPVL+LTARD + K+ LD GADDYL KPFA EEL ARIRAL+ Sbjct: 57 LDGREVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALV 116 Query: 117 RRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 RR + + L G+L L++ R+VW G ++ L+ +E+ALL LM + R+ + + Sbjct: 117 RRADQPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILS 176 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGY 214 ++++ +P +N ++V++ LR K+ + + I TVRG GY Sbjct: 177 AVWDYAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGY 218 >UniRef50_Q2L1Q6 Two-component response regulator n=3 Tax=Proteobacteria RepID=Q2L1Q6_BORA1 Length = 223 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 3/218 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ L + + G++ V A Q +A + ++LD+ LP +DG Sbjct: 1 MRILLVEDNPDLGDAVESKLRNAGHSVQWVRDGLAAVQWGQAEPWDALLLDISLPGKDGD 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R PVL++TAR + DK+ LD+GADDYLVKPF L EL AR+RAL+RR Sbjct: 61 AVLRELRAAGMESPVLVMTARAEIEDKVDMLDLGADDYLVKPFDLRELEARLRALMRRPG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q S + GNLTL+ R VW+ G+ L L +E+ LL L+ + G V +E L +++ Sbjct: 121 GQTSSVAMFGNLTLDSANRGVWVNGQPLELGRREFRLLEILLTRQGQTVAKERLMAQVFD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR--IRTVRGFGYML 216 D+ S N LE+ I LR K+ A I TVRG GY + Sbjct: 181 ADD-VSLNALELLISRLRRKLADASVDIVTVRGVGYQV 217 >UniRef50_Q3ATG7 Two component transcriptional regulator, winged helix family n=12 Tax=Chlorobiaceae RepID=Q3ATG7_CHLCH Length = 253 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 128/226 (56%), Gaps = 7/226 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VEDD L + GY C V +A A L ++LV+LD+ LP DG Sbjct: 23 LLVVEDDQNLAALMEYNLNRAGYRCHIVGSAEAAMVELGRKSFALVLLDVMLPGMDGFEL 82 Query: 63 LARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL---R 117 IR LP++++TA+ D+I G ++G DDY+VKPF+ EL+ RIRA+L R Sbjct: 83 CRHIRNTHLYRDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSFRELNLRIRAILKRER 142 Query: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 R + + + L G L +++ R V + G+EL+LT E+ LL L+ + G RE L +D Sbjct: 143 RQSGKAQEVLGTGGLEVDLVRHCVTLDGQELVLTLMEFKLLVALLKRKGEAQSRETLLSD 202 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGK--ARIRTVRGFGYMLVANEE 221 +++ D ST T++ HI +R+K+G A I+TVRG GY L E+ Sbjct: 203 VWDIDKSISTRTIDTHITRIREKLGNYGALIKTVRGLGYRLEPQED 248 >UniRef50_C4I5X0 DNA-binding response regulator n=78 Tax=Bacteria RepID=C4I5X0_BURPS Length = 232 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/216 (39%), Positives = 129/216 (59%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L + + + +G+ D V + A + + Y L++LDL LPD GL Sbjct: 14 MRVLLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLILLDLLLPDGRGL 73 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 FL +R T+PV+ILTA D + ++IAGL+ GADDYL+KPF L EL AR+ A+ RR++ Sbjct: 74 DFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYS 133 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + +G L +++ R V G + LT E+ALL L+ G + + L +Y+ Sbjct: 134 GNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYS 193 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 + +E +NT+EVH+ LR K+G I TVRG GY L Sbjct: 194 FSDEVGSNTIEVHVSRLRKKLGAELIETVRGLGYRL 229 >UniRef50_B0ABP9 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABP9_9CLOT Length = 223 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 133/221 (60%), Gaps = 6/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VED+ LL+ I + +S + A +E Y L+VLDL LP+ G+ Sbjct: 1 MKVLVVEDNIKLLKS-ISDELNNHFETESCSDGEEALYMIEQNIYDLIVLDLMLPNLSGI 59 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R K PVLILTA+++L DK++ ++GA+DYL KPF +EEL ARI A+LR + Sbjct: 60 EILKCMRDKFIDTPVLILTAKESLNDKVSAFEIGANDYLTKPFYMEELVARIYAILRTNG 119 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 Q ++ + +L L++ +R+V++ EE+ L K++ LL L+L GS + +E +Y+ ++ Sbjct: 120 KMQAKNTIDFKDLHLDLNKRRVFIKDEEIELQNKQFNLLEYLLLNKGSILLKEQIYDRVW 179 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216 D++ + +EV+I +LR K+ K I+T R GYM Sbjct: 180 GIDSDVTIEIVEVYISHLRKKLSKYGYDKCIKTKRKVGYMF 220 >UniRef50_B5WI25 Two component transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. H160 RepID=B5WI25_9BURK Length = 240 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VEDD + + A + +A + V++ G + VVLD LPD DGL Sbjct: 16 RILVVEDDDRVRLEVSTALEDYDFAVEGVSSGHAGLLRALNGDFDAVVLDRMLPDVDGLS 75 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L+ +R PVLIL+A + +++ GL G DDYL KPF EL AR+ ALLRR ++ Sbjct: 76 ILSTLRNVGTETPVLILSALSAVDERVRGLRAGGDDYLTKPFDSLELTARLNALLRRRSS 135 Query: 122 QGESELI-VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ ++ VG+L L+MG +V GE + L P+EY LL LML PV R +L+ ++N Sbjct: 136 SEQANVLSVGDLVLDMGTHRVRRAGESIELKPREYELLKYLMLHTEQPVTRAMLFESVWN 195 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANE 220 + TN +++HI LR K+ I TVR GY+L A E Sbjct: 196 YHFNVHTNVIDMHIGQLRRKISLNGRFSLMIHTVRNVGYVLRAGE 240 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 134/224 (59%), Gaps = 13/224 (5%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEA---GHYSLVVLDLGLPDEDG 59 ILIVED+ + + L L + EGY SVT + L+A G YSLV+LD+ LP G Sbjct: 6 ILIVEDEEKIARVLQLELEYEGY---SVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSG 62 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 L L R+R+ PV++LTARD++ DK+ GLD+GA+DY+ KPF +EEL ARIRA LR++ Sbjct: 63 LEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQN 122 Query: 120 NNQGE---SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 + E + L +L +N R+V G +E+ LTP+E+ LL ++ + RE + + Sbjct: 123 GTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILS 182 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 ++ +D TN ++V+I +R K+ K I T+RG GY + Sbjct: 183 SVWGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+EDD + + L + + + D + +AG+Y L++LDL LP DG+ Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R Y +L+LTARDT +KI GLD GADDYLVKPF LEEL ARIRAL RR Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L+ G+L L+ V G + L LT KEY +L + + R + + ++ Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 181 WDNEPSTNTLEVHIHNLRDK---VGKAR--IRTVRGFGYMLVANE 220 +D T++ HI NLR K VG + I TV G GY L E Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRLCPKE 225 >UniRef50_A6AUV7 Response regulator receiver domain protein n=2 Tax=Vibrio harveyi RepID=A6AUV7_VIBHA Length = 228 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 10/227 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++IL VED+ L Q + + EG CD A + ++ Y ++VLDL LP GL Sbjct: 7 LQILFVEDNIELAQTTVEHFELEGICCDHALNGLAALELVKQTQYHVIVLDLNLPKMSGL 66 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F +R++ +P+++LTA+D L DK+ G + GADDY+ KPFA EEL R++ L RR + Sbjct: 67 EFSRVLREQGNDVPIIMLTAKDKLEDKLVGFESGADDYMTKPFAFEELLMRVKVLSRRRS 126 Query: 121 NQGESELI-VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 GE + +G LT+N+ + V + + ++P +++L L+ + PV RE + ++ Sbjct: 127 --GEVSIFKLGELTVNLTEKTVCRNDDVIKVSPTGFSILEVLLRSSPKPVSREYIIQTVW 184 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEEN 222 D +P TN+L+VH+ LR + K I T++G G+ L NEE Sbjct: 185 G-DAQPETNSLKVHMFKLRSALDGNYEKKLIHTIKGVGFSL--NEET 228 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 129/232 (55%), Gaps = 17/232 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMA-----EQSLEAGHYS----LVVLDL 52 +IL+VED+ ++ + L Q EG+ D R A S EAG + LVVLDL Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 GLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 LP +GL F +R++ T+P+L+L+A+DT TD++ GL++GADDYL KPF EL AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 RALLRRHNNQ-GESELIV--GNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 RALLRR NQ E+ ++ L L +V + EL L+PKE+ LL M Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYML 216 R+ L I+ D + T++VHI LR+K+ + + TVRGFGY L Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+V+DD L Q L + + Y D T +E+ YSLV+LD+ LP +G+ Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R Y +PVL+LTARD+ DK+ GLD GADDYLVKP EEL AR+RALLRR Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + G+LTLN + ++ L LTPKEY L+ + + + +++ Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR-----IRTVRGFGYML 216 + + NT+ HI +LR+K+ A I V G GY + Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRI 221 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I+ + DD +L+ L G ++ T R Q LE + L+++D+ +P +G+ Sbjct: 488 IIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDL 547 Query: 63 LARIRQK---KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 IR + +Y LP+L+LT + GADD++ KP EL AR+ + L R Sbjct: 548 CQVIRNEPRWRY-LPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHR 605 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLP--DEDGL 60 +LIV+ DT+L + +I A + G +A + S+++L+L P +EDGL Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L I +PV+I + R + D++ +G+ +L KP + ++ + +L + Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIVEIVTGILNNNT 483 Query: 121 NQG 123 G Sbjct: 484 ITG 486 >UniRef50_D1ST94 Two component transcriptional regulator, winged helix family n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1ST94_9BURK Length = 223 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 129/222 (58%), Gaps = 3/222 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L G+ Q+EG+ D +A ++ Y VLDLGLP DG Sbjct: 1 MRILVVEDDPALRLGIRRMLQSEGWQVDVANDGELALTAVATAEYEAAVLDLGLPRRDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R+++ L VLILTARD L ++ GL+ GADD+L KPF +EL AR+RA+ RR + Sbjct: 61 EVLRRWREQRRDLAVLILTARDELDQRVRGLNEGADDFLAKPFEAQELVARLRAITRRRS 120 Query: 121 NQGESELI-VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + ++ +G+L+ + R++ + E L L+P+E AL+ LM G V + + + + Sbjct: 121 KGLMTNVLRIGDLSFDTESRELRLREERLPLSPREAALVELLMASPGKAVAKSRIVSAMS 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLVAN 219 W+ + S N +E++I LR K+ + I TVRG GY + A Sbjct: 181 TWETDFSANAVEIYILKLRRKLAGSGVAIVTVRGVGYAMEAE 222 >UniRef50_A6WZ81 Cell cycle response regulator ctrA n=152 Tax=cellular organisms RepID=CTRA_OCHA4 Length = 232 Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 129/224 (57%), Gaps = 11/224 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGH---YSLVVLDLGLPDE 57 M++L++EDD+ + Q + L ++E + +V T + E+ ++ G Y +++LDL LPD Sbjct: 1 MRVLLIEDDSAIAQSIELMLKSESF---NVYTTDLGEEGIDLGKLYDYDIILLDLNLPDM 57 Query: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 G L +R K P+LIL+ + DK+ GL GADDY+ KPF +EL ARI A++R Sbjct: 58 SGYEVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVR 117 Query: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 R +S + G+L +N+ + V + G+ + LT KEY +L L L+ G+ + +E+ N Sbjct: 118 RSKGHAQSVITTGDLVVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNH 177 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYML 216 +Y +EP ++V I LR K+ ++ I TV G GY+L Sbjct: 178 LYGGMDEPELKIIDVFICKLRKKLDAVSGSQSYIETVWGRGYVL 221 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L + A + E + D + +V+LD+ LP DG Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+K PVL+LTA + ++ GL++GADDYL KPF L EL AR++AL+RR Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +L+ G+L L+ R+V+ GG+E+ LT KEY +L LM+ V +E L +++ Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 +D+ ++TL HI NLR K+ K I TVRG GY++ Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYVV 230 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 126/218 (57%), Gaps = 4/218 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VED+ L Q + L + EGY V + + L++LD LP GL Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 R+RQ +P+++LTA+D ++D++AGLD GADDY+VKPF LEEL AR+RA LRR++ + Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 L +L+LN R+V+ G + LT KE+ LL LM + R+ + ++ +D Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 183 NEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 +N +EV++ LR K+ K I+TVRG GY+L Sbjct: 186 FMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 129/224 (57%), Gaps = 9/224 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M ILIV+DD+ LL L A + + Y ++ A + Y L++LD+ LP DGL Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ PVL+LTAR + D++ GLD GADDYL KPF++ EL ARIRALLRR + Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR-D 124 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + ++ L G L+LN R V + + LT KE+++L L+ GS V R + ++ Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184 Query: 181 WDNEP--STNTLEVHIHNLRDKVGKAR------IRTVRGFGYML 216 + +P +N ++VHI NLR K+ IRT+RG G+++ Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFII 228 >UniRef50_C3X1J5 Response regulator receiver:Transcriptional regulatory protein n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X1J5_OXAFO Length = 223 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 123/219 (56%), Gaps = 5/219 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILI+ED+ + L+ + +G+ D+ A L + L++LD+ LP DGL Sbjct: 3 KILIIEDNQDIRYNLVDFLEAKGHKTDNTDDGLKALALLTLQSFDLIILDIMLPGMDGLD 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +R + PVL L+ARDT+ D+I GL GADDYLVKPF+L EL RI A+LRR Sbjct: 63 LCRELRARGNETPVLFLSARDTVQDRIQGLSTGADDYLVKPFSLAELELRISAILRRVKR 122 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 L V ++ +N+ V + L P + +L LMLK+ S V RE + N+++ Sbjct: 123 PAFHLLQVADIVMNLDELTVTRADVPVRLNPMMFKILKLLMLKSPSVVSREEMENELWG- 181 Query: 182 DNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 D+ P +++L HIHNLR + G + ++TV GFG+ L Sbjct: 182 DDRPDSDSLRTHIHNLRAVIDGPFGTSLLKTVSGFGWTL 220 >UniRef50_B3PFT8 AbfR arabinofuranosidase two component system response regulator n=26 Tax=Proteobacteria RepID=B3PFT8_CELJU Length = 232 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 130/232 (56%), Gaps = 11/232 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +KIL+++DD L Q L EG+A D + + A + E YSL+VLD+ LP G Sbjct: 2 LKILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSGF 61 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ T PV++LTA+ D++ GL++GADDYL KP EL ARIRA+LRR + Sbjct: 62 DVLKILRQHSQT-PVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRAS 120 Query: 121 ----NQGESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 NQ E L G L+L++G R ++++LT E+++L L+ +AG + ++ + Sbjct: 121 IAEANQPNVERLTSGKLSLHLGTRTATWDNQDVVLTGTEFSVLEILVRRAGQVISKDDMT 180 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 N P +++VH+ N+R K+ K I VRG GYML N+E Sbjct: 181 EQALNRKLTPYDRSIDVHVSNIRKKIALAGSTKDLIINVRGAGYMLTLNDEQ 232 >UniRef50_C7RI96 Two component transcriptional regulator, winged helix family n=4 Tax=Anaerococcus RepID=C7RI96_ANAPD Length = 227 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 130/223 (58%), Gaps = 10/223 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VEDD +L + + + E Y T++ A + ++ + L +LD+ LP E+G + Sbjct: 5 VLVVEDDESILDLIEIYLENENYIIKRATSSEQALKYIKEKEFDLAILDIMLPGENGYYI 64 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN- 121 A+IR+ Y P+++LTA+D + KI GL GADDY+ KPF EL AR++A LRR+NN Sbjct: 65 CAKIRES-YNYPIIMLTAKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQLRRYNNY 123 Query: 122 -----QGESELIV-GNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 +G ++ N+ LN+ R+V + G+E+ LTP E+ +L L+ K + E L+ Sbjct: 124 NLKTKEGTGNILTYQNVDLNIKSREVLVDGQEIDLTPIEFIILKSLLEKKSEVLGSEDLF 183 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVGKAR--IRTVRGFGYML 216 IY + NT+ VHI ++R+K+G+ I TV G GY + Sbjct: 184 YKIYPDEYYIKNNTVSVHIRHIREKLGEKNNIITTVWGVGYKI 226 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 8/222 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIVED+ + + + L + EGY D R+ + G Y L++LD+ LP +G+ Sbjct: 5 KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN- 120 L R+RQ +PV++LTA+D + DK+ GLD+GA+DY+ KPFA+EEL ARIR + + + Sbjct: 65 VLRRLRQIS-EIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123 Query: 121 --NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + + G+L +++GR V + LT KE+ LL LM+ + RE + + Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183 Query: 179 YNWDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYML 216 + +D TN ++V+I LR DK K I T+RG GY Sbjct: 184 WGYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQF 225 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 133/225 (59%), Gaps = 11/225 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+++DD L + L TEGY ++ + + ++ HY LV+LD+ +P DG Sbjct: 6 ILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGIDGFET 65 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR---H 119 L RIR+ +PVL+LTA+ TD+I GL++GADDYL KP++ EL ARI+ALLRR Sbjct: 66 LKRIRESS-IVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIELD 124 Query: 120 NNQGESE---LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 NQ E + L + LN +V+ GE + +T E+ +L LM +AG V +E LY Sbjct: 125 KNQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKEDLYL 184 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 ++ + ++++H+ N+R K+G +++I+T+RG GYM V Sbjct: 185 EVLGREIMAYDRSIDMHVSNVRRKLGGTTEQSKIQTIRGIGYMFV 229 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VED+ + + EGY V R G LV+LD+ LPD GL Sbjct: 7 LLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLEV 66 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 R+R + LP+L+LTA D + D++ GL GADDYL KPFA +EL ARI ALLRR + Sbjct: 67 CERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDRP 126 Query: 123 GESELIV-GNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 E + G L L+ R GEE+ LTP E+ LL+ LM + G + R+ ++ +++ Sbjct: 127 SEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWGH 186 Query: 182 DNEPSTNTLEVHIHNLR---DKVG-KARIRTVRGFGYMLVANEE 221 D + TN ++V+++ +R D+VG +A I TVRG GY A E Sbjct: 187 DFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYRYTACSE 230 >UniRef50_B5JZG0 Two-component transcriptional regulator, winged helix family n=1 Tax=Octadecabacter antarcticus 238 RepID=B5JZG0_9RHOB Length = 221 Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 132/219 (60%), Gaps = 6/219 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 M+ILIVED+ + + Q+EGY + A E E G YS +LD+GLP Sbjct: 1 MRILIVEDEARIADLIADVLQSEGYIAE---IASDGEDGWEKGGTESYSAAILDIGLPRM 57 Query: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 DG+ L R++ PV++L+A+ + +++ G+D GADDY+VKPF +EEL AR+RALLR Sbjct: 58 DGISVLRNWRKEGVNFPVMLLSAKSSWNERVEGIDAGADDYMVKPFQMEELLARLRALLR 117 Query: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 R + Q + L VG L L++ + ++ + G + +TP E+ LLS L+ G V + +L + Sbjct: 118 RTSTQKMTALSVGGLQLDLLQMRITLEGRRIKVTPLEFRLLSYLLHHKGEVVAQSVLAEN 177 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 IY D EP +N +EV I LR K+G I T RGFGY++ Sbjct: 178 IYFRDQEPDSNAIEVLIGRLRRKLGSDLIETKRGFGYVI 216 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 5/218 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIV+D+ + + + Q GY C+ A L G + LV+LD+ +P DG+ Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L +R + PV+ILTAR DK+AGL+ GADDY+VKPF+ EL AR++A+L R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 122 QGESE---LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + E+ + G LT++ V + GE++ LTPKE+ LL L G + RE + + Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR--IRTVRGFGY 214 +N+D T++ H+ LR +GK R I TV G GY Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGKCRGYIATVWGIGY 291 >UniRef50_C1XYD1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XYD1_9DEIN Length = 226 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPD--ED 58 M++L+VEDD L + + +G D A + + E Y L++LD+ LP+ + Sbjct: 1 MRVLLVEDDPRLAALIAEGLRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQA 60 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 G +R ++ +P+L LTAR + K+ GLD G DDYL KPF EL ARIRAL+RR Sbjct: 61 GFDLARTLRNQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRR 120 Query: 119 HNNQGESEL-IVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + + + + L++ QV GG+ + LTP+EYAL+ L L G R L Sbjct: 121 AKGEAANLIPLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIER 180 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 ++ ++E T ++V++ +LR K+G+ + TVRG GY L EEN Sbjct: 181 VWPGESEVDTKVVDVYVSSLRRKLGEDFVETVRGLGYRLGRMEEN 225 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 121/219 (55%), Gaps = 5/219 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VED L + L + EG+A D T A+ + Y +VVLD+ LP DGL Sbjct: 1 MLLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSL 60 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP-FALEELHARIRALLRRHNN 121 L R R VL+LTA+ DK+ GLD GADDYL K LEEL ARIRAL+RR + Sbjct: 61 LKRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQ 120 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 Q + L +L ++ R V G + LTP+EYALL L G V R +++ +Y+ Sbjct: 121 QKDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDE 180 Query: 182 DNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 +E ++N ++V+I LR+KV K I T G GYML Sbjct: 181 YDENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYML 219 >UniRef50_A5WEA6 Two component transcriptional regulator, winged helix family n=4 Tax=Gammaproteobacteria RepID=A5WEA6_PSYWF Length = 231 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 129/226 (57%), Gaps = 7/226 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILI+ED+ ++ + + +GY D+ Y +++LD+ LP DG Sbjct: 3 KILIIEDNPDIVANVYAFFEPKGYQLDNAHNGPSGLTLAAENTYDVILLDVMLPGMDGTQ 62 Query: 62 FLARIRQKKYT-LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R+K + PVL+LTARDTL+DK+AG D GADDYLVKPF+L EL R+RAL+RRH Sbjct: 63 LCKALREKLHNKTPVLMLTARDTLSDKVAGFDSGADDYLVKPFSLVELEVRVRALIRRHQ 122 Query: 121 NQ-GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + E ++ +G LTLN+ + + L LTP + +L LM + V + L ++ Sbjct: 123 GEFFEQDIKLGPLTLNIEKHTAYRDDIPLKLTPTGFKILQTLMQSYPNIVSKSELEEKVW 182 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANEE 221 D P+++ L H+H++R +V K A + TV G GY +++ E+ Sbjct: 183 GED-LPNSDALRTHLHSVRTQVDKPFDHAMLITVPGVGYQMISPED 227 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ + Q + A + Y V T A L + VVLDLGLPD DGL Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R + PVL+L+ARD + D++ GL++GADDYL KPF+++E+ AR+R+LLRRH Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G + +++ R V G + LT +EYALL + + R ++ ++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 181 WDNEPSTNTLEVHIHNLRDKV---GKAR-IRTVRGFGYML 216 + TN ++V++ LR K+ G+ I+T+RG GY L Sbjct: 225 ASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >UniRef50_A6LDA1 Two-component system response regulator n=39 Tax=Bacteroidetes RepID=A6LDA1_PARD8 Length = 226 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + ++ + + E Y +S ++ R A + Y +VLD+ LP GL Sbjct: 1 MKILVVEDENALREVIVRSLEKERYVVESASSFREASLKINDYDYDCIVLDIMLPGGSGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + ++I++A+D++ DK+ GLD+GADDYL KPF L EL+ARI++++RR Sbjct: 61 TLLKELRALRKKDSIIIISAKDSIEDKVTGLDLGADDYLTKPFHLAELNARIKSVIRRKQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 GE +L + NLT+ + V++ G+E++L KE+ LL + + + L ++ Sbjct: 121 QDGELQLSLANLTIYPDKHSVYINGKEIVLNRKEFDLLYYFISNPNRLISKATLAESVWG 180 Query: 181 --WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANE 220 D + + + + NLR K+ A I+ V GFGY + E Sbjct: 181 DYIDQADNFDFIYSQVKNLRKKLKAAGAIPEIKAVYGFGYKMTDEE 226 >UniRef50_A5FGB3 Two component transcriptional regulator, winged helix family n=2 Tax=Flavobacteriaceae RepID=A5FGB3_FLAJ1 Length = 226 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 128/227 (56%), Gaps = 7/227 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDD L + + T+ + C + + Y L++LD+ +P +G+ Sbjct: 1 MKILLLEDDFTLSKEISAFFTTKQFECTPYYDGSLLLKKYFPYEYDLIILDINVPGINGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 IR+ P+++LTA + DK+A D GADDYLVKPF EEL+ARI +LLRR Sbjct: 61 EVCKGIREIDKKTPIIMLTAFSEIEDKLASFDSGADDYLVKPFHFEELYARISSLLRRKE 120 Query: 121 --NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 Q E ++I+ +L + +V GEE+ LTPKE+ L+ L G + ++ + + Sbjct: 121 IPQQTEKKIIIEDLEILEDEMKVLRSGEEIKLTPKEFKLILILAHAKGKVLSKQFIAEKL 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVANEE 221 +++ E + NT+EV+I+ LR K+ K I+T G+GY L +NEE Sbjct: 181 WDYHIETNQNTIEVYINFLRKKIDKDHETKLIKTKIGYGYYL-SNEE 226 >UniRef50_Q0VRB9 DNA-binding heavy metal response regulator, putative n=4 Tax=Gammaproteobacteria RepID=Q0VRB9_ALCBS Length = 232 Score = 139 bits (350), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 129/220 (58%), Gaps = 7/220 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 + IL+VED L Q ++ + +G D R+A + ++ HY L++LD+ LP EDG Sbjct: 4 LSILLVEDHRQLAQTVLEYLEQQGATVDYAGNTRLARELVQEHHYDLMLLDVMLPGEDGY 63 Query: 61 HFLARIRQK-KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 F +R++ +PV+ +TARD L DK+ G D G DDY+VKPFAL EL AR+ AL+RR Sbjct: 64 SFCQYLREELALDMPVIFMTARDQLEDKLEGFDRGGDDYIVKPFALPELVARVSALIRRQ 123 Query: 120 NNQ-GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + L + +L L+ R++V GG+ L L+P + +L LM ++ V RE L +++ Sbjct: 124 RKEVTANTLQIADLELDPARQEVRRGGQRLKLSPTAFRILRILMRESPKVVSREQLEHEL 183 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGY 214 + D P ++ L H++NLR V K A + T+ G G+ Sbjct: 184 WG-DLVPDSDALRSHLYNLRKAVDKPFDEALLNTLPGVGF 222 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 139 bits (349), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 130/225 (57%), Gaps = 13/225 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLE---AGHYSLVVLDLGLPDED 58 +ILI+ED+ + L + EGY V TA E+ L+ A LV+LD+ +P D Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGY---RVITAADGEEGLKRVMAEKPDLVLLDVMMPKLD 59 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 G A +R+ +P+L+LTA+ + D++ GLD GADDYLVKPF+ +EL AR+RA+LRR Sbjct: 60 GFALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRR 119 Query: 119 HNNQGE--SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 H + + L G + ++M ++ G ++L T KEYA+L L G P+ RE + Sbjct: 120 HQREKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLD 179 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKV----GKAR-IRTVRGFGYML 216 ++ + P+T T++ HI +LR K+ K R I+TV G GY L Sbjct: 180 VVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRL 224 >UniRef50_C1XFY4 Two component transcriptional regulator, winged helix family n=2 Tax=Meiothermus RepID=C1XFY4_MEIRU Length = 218 Score = 139 bits (349), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 126/218 (57%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED T L + L +G+A D A+ L++ Y LVVLDLGLPD DG+ Sbjct: 1 MRLLLVEDHTGLGRLLQDTLSGQGFAVDLAEDMASADGLLQSFPYDLVVLDLGLPDGDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + +PVLILTARD L D++ GL+ GADDYLVKPF EEL ARIRALLRR Sbjct: 61 ELLQSLRARGEKMPVLILTARDGLADRVKGLEAGADDYLVKPFHPEELVARIRALLRRAR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + VG L L+M ++ W G+ + L+ +EYALL L L A RE L ++ Sbjct: 121 GEPTNRFKVGRLELDMELKRAWWDGQSVHLSGREYALLEFLALHAEGYFSREALMEKVWP 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 + T++ ++ LR K+ I TVR GY + Sbjct: 181 GEAAIDPRTVDTYVRYLRRKLSPEAIETVRNLGYRFLG 218 >UniRef50_D2PKG5 Two component transcriptional regulator, winged helix family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PKG5_9ACTO Length = 226 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 122/222 (54%), Gaps = 10/222 (4%) Query: 5 IVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFLA 64 +VED+ L+ L GYA D+ T A + L Y L +LD+ LPD +GL Sbjct: 1 MVEDEEGLVSALRSGLGRAGYAVDTALTGAEAVEKLATTAYDLAILDITLPDTNGLDLCR 60 Query: 65 RIRQKKYT------LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 +R+ + L VL+LTAR +L D++ GLD GADDYL KPFAL EL ARIRALLRR Sbjct: 61 AVRRGEIEVASGRELRVLMLTARASLADRVRGLDEGADDYLTKPFALVELLARIRALLRR 120 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 G ++L VG L L+ R GG EL LT KE+ +L LM + G V E L + Sbjct: 121 DVTNGTTQLHVGELVLDSSRHLATRGGRELSLTLKEFGVLRYLMSRPGHVVSAEELLEHV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 ++ + +P T ++ V + LR K+ + + TV G GY L Sbjct: 181 WDENADPFTQSVRVTVGTLRRKLTQEGEEPLLETVIGRGYRL 222 >UniRef50_O66657 Transcriptional regulator (PhoB-like) n=2 Tax=Aquificaceae RepID=O66657_AQUAE Length = 228 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 129/220 (58%), Gaps = 5/220 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +I ++EDD L + L + EG+ + A + + L+++D+ LPD DG Sbjct: 7 RIALIEDDKDLAFLVKLNLEREGFEVEHFERATPFFKFISENSVDLILIDIMLPDLDGFR 66 Query: 62 F--LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 + R +PV+ +TA+ DK+ G ++GADDY+ KPF+++EL AR+RA+L+R+ Sbjct: 67 IANFLKSRADLKEIPVIFITAKGEEEDKLKGFELGADDYITKPFSMKELIARVRAVLKRY 126 Query: 120 NNQGESELI-VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 ES+++ + L+ R+++++ G E+ LTP E+ +L LM G PV R L + Sbjct: 127 KKVSESKVLKYEGVELDTERQKLFVDGREVYLTPAEFKILKTLMENFGRPVSRSSLVEKL 186 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR--IRTVRGFGYML 216 ++++ E + ++VH+ ++RDK+GK + I+TVRG GY Sbjct: 187 WDYERETTERAIDVHVKHIRDKLGKYKGLIKTVRGVGYKF 226 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 120/220 (54%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+ ED T + L GY D A E Y + D+ +P DG+ Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + ++R+ P ++LTAR+ + D++ GLD GADDYL KPF+L EL AR+RA+LRR Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + V +L L++ W G E+ LT +E++LL LML + PV + + +++ Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216 + TN ++V+I LR+K+ + I+T RG GY + Sbjct: 181 QSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAI 220 >UniRef50_Q04HD6 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=12 Tax=Lactobacillales RepID=Q04HD6_OENOB Length = 231 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 133/227 (58%), Gaps = 6/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +KIL++EDD +L I A +E V E Y L+V DL LP+ +GL Sbjct: 6 VKILLIEDDKIL-NDDITAMLSEIAEVKQVFNGADGEYEAVEAPYDLIVSDLMLPEMNGL 64 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R PVLILTA+D++ DK+ G +VGADDYL KPF EEL AR+ ALLRR Sbjct: 65 DIIKEMRDAHIETPVLILTAKDSVDDKVKGFEVGADDYLTKPFHREELLARVEALLRRAG 124 Query: 121 -NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + E E+ +GNL +++ R V +G + + L KEY +L L + ++ +++ ++ Sbjct: 125 IDTEEKEINIGNLKIHLSNRTVTVGNQNVQLVGKEYDILVYLAKNKNIIITKDQIFDRVW 184 Query: 180 NWDNEPSTNTLEVHIHNLRDK---VGKAR-IRTVRGFGYMLVANEEN 222 D++ +T+ + ++++NLR K VGK I+T+R G++L ++E+N Sbjct: 185 GLDSDTTTSVVNIYLNNLRRKLESVGKNDLIKTLRNVGFILESDEQN 231 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 123/221 (55%), Gaps = 6/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMA-EQSLEAGHYSLVVLDLGLPDEDG 59 M++L+VEDD L Q L Q Y+ D + + Q LE Y ++D+GLP DG Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFP-YDAAIIDIGLPKLDG 59 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 + + +R+++ + P+L+LTARD+ DK++GLD GADDYL KPF EEL AR++AL+RR Sbjct: 60 ISLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRA 119 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + S + G ++N+ +V + L+ EY L LML G + +L IY Sbjct: 120 AGKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIY 179 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 + D + +N +EV I LR K+ I T+RG GY L Sbjct: 180 DQDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRL 220 >UniRef50_C7MLF5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=10 Tax=Bacteria RepID=C7MLF5_CRYCD Length = 234 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 136/231 (58%), Gaps = 18/231 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMA-EQSLEAGHYSLVVLDLGLPDEDGL 60 KILIVED+ + + + L + EGY D + R EQ+L A Y L++LD+ LP +GL Sbjct: 3 KILIVEDEEKIARFIELELKHEGYEVDKASDGRSGVEQALSAD-YDLILLDILLPQINGL 61 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L RIR++K T P ++LTARD + DK+AGLD GADDYL KPFA+EEL ARIR L+ H Sbjct: 62 EVLRRIRREKDT-PTIMLTARDAVMDKVAGLDAGADDYLTKPFAIEELLARIRVALKHHK 120 Query: 121 NQGE-----------SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 + + L + + L++ RR+V + + + LT +E+ +L LM AG + Sbjct: 121 SPDQPTSLSPEPTATKTLSIKGVLLDIDRREVRVNSDPVELTNREFEVLRCLMEHAGVVM 180 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 HRE + D ++ +N ++VHI +LR K+ I TVRG GY++ Sbjct: 181 HRERIAADALGYEFMGDSNNVDVHIAHLRAKIDDKHDIKLISTVRGVGYVI 231 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LI+ED+ L Q L + G+ D+ R + +G Y V+LD+ LP+ DG Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + ++R + + +PV++LTA+D++ D++ GL+ GADDYL KPF +EL AR+ AL+RR Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +Q S L G LTL+ R+ +G ++ L +E+ +L LM R+ + ++ Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVANEE 221 + + ++N ++VHI LRDK+ + TVRG GY VAN E Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYK-VANPE 224 >UniRef50_A1RNU1 Two component transcriptional regulator, winged helix family n=23 Tax=Gammaproteobacteria RepID=A1RNU1_SHESW Length = 224 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 123/219 (56%), Gaps = 3/219 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VED+ +L+ L + GY D A A+ ++ Y V+LD+GLPD +GL Sbjct: 1 MKLLLVEDNPMLVNELAKQLKLAGYVTDITDKALEADYLIKETQYDCVILDIGLPDGNGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R + + PV++LTAR +K+ G + GADDYL KPF +EL ARI+AL+ R + Sbjct: 61 ELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAH 120 Query: 121 ---NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 N +L G +TL+ + V + LT E+ LL ++ + + L + Sbjct: 121 GRLNTPSKQLTYGGVTLDETEQTVKVADHLYELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 +Y +D+E +N +EV++ +LR K+GK I T RG GY+ Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKLGKTAIETRRGQGYIF 219 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 12/225 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VED+ + + + G+ D RM + + +Y LV+LDL LP +G Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 IR+K +P+++LTA + DK+ ++GADDYLVKPF EL ARIR L+R Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 119 ---HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 NNQ ++++G+L ++ +++V GG+++ LT KEY LL L L G + + ++ Sbjct: 161 EVQENNQ--YKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIA 218 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216 +++ D + TN +EV+++ LR K+ K + T G GY L Sbjct: 219 EKVWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYL 263 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 119/223 (53%), Gaps = 10/223 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGH---YSLVVLDLGLPDE 57 M++L+VEDD L + L Y D A E+ L G Y ++D+GLP Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLD---IASDGEEGLFQGREYPYDAAIIDVGLPKL 57 Query: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 DG+ +AR+R++ P+LILTARD DK+ GLD GADDYL KPF EEL AR++AL+R Sbjct: 58 DGIALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIR 117 Query: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 R + + G +LN ++ G +++ L+ EY L ML G + IL Sbjct: 118 RAAGKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEH 177 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216 IY+ D + +N +EV I LR K+ I T+RG GY L Sbjct: 178 IYDQDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRL 220 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L +EDD + ++ ++ G+ D V R + Y ++ LD LP DGL Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L +R PVL+L+A + +++ GL G DDYL KPF EE+ AR+ LLRR Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 QG---ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 E+ L VG LTL++ R+V+ G E+ L P EY +L +M AG + R +L+ + Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 179 YNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 + + +P TN ++VH+ LR K+ IRTVRG GY+L Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYIL 271 >UniRef50_C7RF78 Two component transcriptional regulator, winged helix family n=3 Tax=Anaerococcus RepID=C7RF78_ANAPD Length = 223 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 127/223 (56%), Gaps = 10/223 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGH---YSLVVLDLGLPDE 57 MK+LIVED+ LL+ L GY D AR +++L+ Y +++LD+ LP + Sbjct: 1 MKVLIVEDERKLLRLLDEGLSLLGYVTD---MARDGKEALDLAFVEDYDIIILDINLPKK 57 Query: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 DG L IRQ + +++LTAR + D++ GLD GA+DY+ KPF L+EL AR+R+LLR Sbjct: 58 DGFEVLRDIRQFDKEVNIIMLTARSDIDDRVKGLDFGANDYMTKPFDLKELDARMRSLLR 117 Query: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 R + E ++ + +T + +R+V G L LT KE ++ L L V E L N Sbjct: 118 RKSIMEEKDITIDGITFDTVKREVIFEGSPLTLTAKETGIIEYLFLNRERYVSVEELMNH 177 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 +++ + + +NT+ VH+ +LR K+ GK I V G GY + Sbjct: 178 VWDSNADDFSNTVRVHMSSLRKKIKKATGKNYIENVIGKGYKI 220 >UniRef50_Q31JS2 Two component transcriptional regulator, winged helix family n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31JS2_THICR Length = 223 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 120/218 (55%), Gaps = 2/218 (0%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+VED+ LL++ L + Y DS A L Y L++LDLGLP + GL Sbjct: 3 KILLVEDEALLVENLKKNLSQQQYIVDSALDGEEALYLLNEFEYDLIILDLGLPKKSGLQ 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L +IR + T PVLILTAR+T +++ GL GADDYL KPF EEL ARI LL+R Sbjct: 63 VLEQIRADQNTTPVLILTARNTWQERVEGLKKGADDYLGKPFHFEELLARIEVLLKRPTQ 122 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVH-REILYNDIYN 180 L L++ R++ + + LT E+A L+RL L + V ++ L + + Sbjct: 123 PQARRLQFQEYELDLDCRELKVKEQRFALTKTEFA-LARLFLSHPNRVFSKDTLMQRLGD 181 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 +E +N +EV+I LR +GK I T+RG GY V Sbjct: 182 QHHERDSNLIEVYIRKLRQYMGKTAIETLRGQGYRFVG 219 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+V+DD +L + A + E + + +AR ++LE L+VLD+ LPD GL Sbjct: 1 MKILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + ++++K +PV+ LTAR + D I GL++GADDY+ KPF L ARI+A+ RR+ Sbjct: 61 DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120 Query: 121 NQGESELIV--GNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + +V G++ ++M + G++ L KE+ LL ++ G +R+ + + + Sbjct: 121 MGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 + D T++VHI LR+K+G I+TVRG GY LV E+ Sbjct: 181 WGMDFFGDFRTVDVHISKLREKIGSEFIKTVRGVGYKLVIPED 223 >UniRef50_C6WCC5 Two component transcriptional regulator, winged helix family n=21 Tax=Actinomycetales RepID=C6WCC5_ACTMD Length = 222 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 134/225 (59%), Gaps = 10/225 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD + +GL+ A + GY V A A +L A +V+LDLGLPD DGL Sbjct: 1 MRILVVEDDDRVARGLLTALRHAGY---EVHRAASAAAALAAAPVDVVLLDLGLPDGDGL 57 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R ++ T V+ +TAR +++ GL GADDY+VKPF EL ARI A+LRR Sbjct: 58 DVLRELRDRRGT-AVIAVTARGEERERVLGLRAGADDYVVKPFGTAELLARIEAVLRRTR 116 Query: 121 N----QGESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 + G SE L +G LTL+ R+ + L LT KE+ LL+ L+ +AGS V R+++ Sbjct: 117 DARAGSGRSEALELGPLTLDPATREARVADRPLALTRKEFDLLALLVGRAGSVVSRDLIV 176 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVG-KARIRTVRGFGYMLVAN 219 + ++ E + TL+ HI LR K+G + RI TVRG GY +V Sbjct: 177 DQVWKAHWEAPSRTLDTHIAALRGKLGAEVRIETVRGVGYRIVVT 221 >UniRef50_B4U7G0 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7G0_HYDS0 Length = 233 Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+LIVED+ L + +++G+ D V+ A+ + + Y +V+LDL L ++G+ Sbjct: 1 MKVLIVEDNIDLALSIKDIIRSKGWLADFVSNFEDAKYATKDKSYDIVILDLMLGPKNGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R++ P LILTA+D + DK+ ++GADDYL KPF ++EL ARI A++RR Sbjct: 61 ELLKNAREENLKTPFLILTAKDGINDKLTAFNIGADDYLTKPFDMKELLARIEAIVRRTR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 G +ELI L L+ + + G+ + T K++ +L +L+ G V E L + + Sbjct: 121 QTGSAELICNKLVLDTSNFTIQIDGKVIPATKKQFLILEKLISNVGRVVTVEQLLSYAWG 180 Query: 181 WDNEPSTNTLEVHIHNLR---DKVGKARIRTVRGFGYML 216 D EPS+ +L HI +R D G +IRTV G GY + Sbjct: 181 IDEEPSSFSLRSHIRTIRRLIDGSG-CQIRTVYGIGYSI 218 >UniRef50_A6BKE3 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A6BKE3_9FIRM Length = 221 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 10/222 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M I I+EDDTLL Q L A Q GY S T + A ++ G SL+++D+GLPD +GL Sbjct: 1 MTIGIIEDDTLLHQALKTALQNAGYQTVSAYTKQEALTTI-TGSESLLLIDIGLPDGNGL 59 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR+K +P + LTARD TD + D GADDY+VKPF+++ L RI A++ R+N Sbjct: 60 ACYKKIREKA-EIPAIFLTARDEETDMLTAFDTGADDYVVKPFSMKVLLKRIEAVIGRNN 118 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E +L G + L ++QV+ +E+ILT +EY LL LM G+ + +E + ++ Sbjct: 119 R--EKQLACGEIILFPDKKQVYKNEKEIILTAREYQLLEYLMYNQGNVLTKENILEYVWG 176 Query: 181 WDNEPST-NTLEVHIHNLRDKV-----GKARIRTVRGFGYML 216 D + NT+ V I+ LR K+ ++ V G GY L Sbjct: 177 LDGQFVVDNTVSVTINRLRKKIETDAGSPIYLKNVFGLGYKL 218 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 118/225 (52%), Gaps = 10/225 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+V+D+ ++ + + GY D+ +A HY L VLD+ +P +G Sbjct: 8 ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYEL 67 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 +R + PVL L+ARD+ DK+ GL++GADDYL KPF + EL AR+RALLRR Sbjct: 68 CRNLRTRT-NAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQMD 126 Query: 123 GE----SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 E + G +TL+ R + LTP+E+ LLS LM AG RE L + Sbjct: 127 AEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLREA 186 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR-----IRTVRGFGYMLVA 218 + W+ T T++ HI LRDK+ A I TVRG+GY A Sbjct: 187 WGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++LIVEDD + Q L L + Y + A L+ L +LDL LP +G Sbjct: 3 RVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYD 62 Query: 62 FLARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 L IR K LPV+IL+A+D DKI GLD+GADDYL KPF++ EL ARIR+LLRR Sbjct: 63 ILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRR- 121 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + + E + + L +++ +R V + E + LT KE+ LL L G V RE L N I+ Sbjct: 122 SKKDERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIW 181 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKAR---IRTVRGFGYMLVANEEN 222 +D + TL+VHI++LR K+G I++VR GY LV+ + + Sbjct: 182 GYDFIGESRTLDVHINSLRKKLGNEYAHWIQSVRQVGYRLVSGDND 227 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD + ++ + G+A D Y + ++D+ LP DGL Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R++K P++IL+A+ ++ D++ GL+ G DDYL KPF+ EL AR++AL+RR Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 121 NQGE-SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + E + L VG L++N+ R+V G + L P+E+ALL M G + + ++ ++ Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 ++ +P TN ++V + LR+K+ + + T+RG GY+L Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVL 221 >UniRef50_D1BX45 Two component transcriptional regulator, winged helix family n=26 Tax=Actinomycetales RepID=D1BX45_XYLCX Length = 227 Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 125/224 (55%), Gaps = 9/224 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+ EDD + + L A EGY T + A + AG +VVLDLGLPD DGL Sbjct: 4 VLLAEDDPAIAEPLARALTREGYDVIVQGTGQGAIDN--AGSADVVVLDLGLPDMDGLDV 61 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN- 121 +R ++P+L+LTAR D + GLD GADDY+ KPF L EL AR+RALLRR + Sbjct: 62 ARELRGSGLSVPILVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHGE 121 Query: 122 -QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E EL ++ +++ + + G EL LT KE+ LL L+ AGS V R+ L D++ Sbjct: 122 TTEEEELRAQDVRVDVSAHRAFQGDRELHLTTKEFDLLKVLVANAGSVVVRDTLMRDVWG 181 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR-----IRTVRGFGYMLVAN 219 D ST TL++H+ LR K+G + TVRG G+ A Sbjct: 182 SDPVGSTKTLDMHVSWLRRKLGDDANAPRYVSTVRGLGFRFEAG 225 >UniRef50_A7GB96 DNA-binding response regulator n=16 Tax=Bacteria RepID=A7GB96_CLOBL Length = 232 Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 119/220 (54%), Gaps = 9/220 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I VEDD L+ GL A + +GY D T+ AE + G Y LV+LD+ LPD G Sbjct: 4 IFFVEDDLSLINGLSFAIKKQGYEIDVARTSLEAEALWKNGKYDLVILDVSLPDGSGYDL 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN-- 120 +IR K +P++ LTA D TD I GLD+G DDY+ KPF L +RI ALLRR N Sbjct: 64 CKKIR-KTSKVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRRSNNF 122 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 NQ ++EL + + + + +V+ G++L LT EY LL M + E + + +++ Sbjct: 123 NQADTELNSNGMNVQLLKGEVYKNGKQLDLTASEYKLLCMFMENPDIVLSPEQILSRLWD 182 Query: 181 WD-NEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGY 214 + N NTL V+I LR K+ +I TVR GY Sbjct: 183 CNENYIDNNTLTVYIRRLRTKIEDNPGEPQKIVTVRRMGY 222 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 129/219 (58%), Gaps = 12/219 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILIVED+ L + L L E Y D+ + + +Y L++LDL LP +GL Sbjct: 3 QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +IRQ++ T P++I+TA+ DK+AGLD GADDY+VKPF +EEL ARIRA+LRR Sbjct: 63 ICRKIRQQQST-PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--- 118 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 Q + ++I N TL +V + G E+ LT EY LL L + RE + N ++ + Sbjct: 119 QPQKDIIDVNGTL----LKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 174 Query: 182 DNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 ++E TN ++V+I LR+K+ I TVRG GY++ Sbjct: 175 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 213 >UniRef50_A6Q965 Two-component response regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q965_SULNB Length = 220 Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 125/219 (57%), Gaps = 4/219 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +LIVED+ + L + E Y CD R A + + Y L++LD LPD DGL Sbjct: 1 MYLLIVEDEKAVADQLKELLEQEKYRCDVAYNYRDALEYCDERRYDLILLDWNLPDGDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+++ PVL+L+A + D++A LD G DDYL KP++ EL ARIRALLRR + Sbjct: 61 TLLNVLREEEDATPVLMLSANSKVDDRVAVLDAGGDDYLCKPYSNIELLARIRALLRRES 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND--I 178 Q + L G+LTL+ R+V + E + L+P E+ LL L+L + V ND Sbjct: 121 PQKTTLLKSGDLTLDTSSRKVCVNKEPITLSPAEFDLLE-LLLHNKNIVLTRYQLNDYLC 179 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG-KARIRTVRGFGYML 216 ++++ +N ++VHI NLR K+G I TVRG Y + Sbjct: 180 QDYNSLKQSNLVDVHIKNLRKKIGIDNCIVTVRGVRYKI 218 >UniRef50_B9P733 Predicted protein n=13 Tax=cellular organisms RepID=B9P733_POPTR Length = 239 Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 130/232 (56%), Gaps = 16/232 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD ++ G+ L GYA D V +A A + L + L V+D+GLP DGL Sbjct: 1 MRLLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDLAVIDIGLPGIDGL 60 Query: 61 HFLARIRQ---KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 R+R + +PVLILTARD L D++ GLD GADDY+VKPF L EL AR+RALLR Sbjct: 61 ELTRRLRSSAVESSAMPVLILTARDALQDRVQGLDQGADDYMVKPFELPELLARLRALLR 120 Query: 118 RHNNQGESELIVGNLTLNM-----GRRQVWMGGEE------LILTPKEYALLSRLMLKAG 166 R + L G + L+ G RQ E + L P+E+ +L L++ A Sbjct: 121 RSQAATSAVLSFGPIELDTAGRRAGARQPAQDDESEGKLLPIDLGPREWTVLEYLLIHAP 180 Query: 167 SPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGK--ARIRTVRGFGYML 216 P ++ L + WD E + N +EV++ LR K+ +R++RGFGY L Sbjct: 181 KPASKDKLLQALTGWDREITPNAVEVYVSRLRSKLEPHGVALRSIRGFGYRL 232 >UniRef50_B9ZMZ7 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=B9ZMZ7_9GAMM Length = 238 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++++++EDD L + + G D+ + L H + V+DLGLP DGL Sbjct: 3 LRVVVIEDDLALRSQIAEEMENNGCRVDTASDGDTGLYLLTEYHCDIAVVDLGLPGMDGL 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + + R+ K LP+LILTARD DK+ GL+ GADDYL KPF ++EL AR+RAL RR Sbjct: 63 DVIRKAREVKPQLPILILTARDRWQDKVEGLEAGADDYLTKPFHIQELVARLRALARRSL 122 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 G +L G L ++ V + E + LT EY LL L+ + G + +E+L + +Y Sbjct: 123 QAGREQLQFGPLVIDTATDDVRLNDEPVSLTTFEYRLLLTLVRQPGRVLSKEVLADYLYE 182 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLV 217 D + +N +EV I LR K+ I T+RG GY V Sbjct: 183 HDEDRESNVIEVLIGRLRRKLDPGGSLGLIETLRGRGYRFV 223 >UniRef50_A5VAJ0 Two component transcriptional regulator, winged helix family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VAJ0_SPHWW Length = 226 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 + +L+VEDD L+ L + G+ R A +++ + ++LDL LP DGL Sbjct: 3 LNLLLVEDDAALVAMLERDLREMGHHVSVAMDGRSAVEAVTRDRFDAMILDLMLPTVDGL 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL--RR 118 L RIRQ LPV+IL+A +K+ GLD GADDY+VKP EL+AR+ A+L RR Sbjct: 63 SVLQRIRQDGMGLPVIILSALGRPVEKVEGLDAGADDYVVKPVTAAELNARLNAILRGRR 122 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 Q L G++ ++ R + W G+ + L+ E+ LL L+ S V R +L + Sbjct: 123 QPAQDGDTLRAGDIVVSPARFRAWRDGKAVDLSKIEFNLLLELVRNVDSIVTRAMLLEKV 182 Query: 179 YNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 + +D EP+TN ++VHI LR K+ G I TVRG GY+L Sbjct: 183 WGYDFEPATNLVDVHIRRLRAKLTANGGGDPISTVRGVGYLL 224 >UniRef50_Q03TF3 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03TF3_LACBA Length = 230 Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 133/229 (58%), Gaps = 12/229 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQS---LEAGHYSLVVLDLGLPDED 58 K+L+VED+ L ++ + C++ TTA EQ G + ++LDL LP E Sbjct: 6 KVLVVEDEKALSADIVELIEP---ICET-TTAFDGEQGEFLASQGVFDAIILDLMLPGES 61 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 GL L IR + PVLILTA+DT+ DK+ G + GADDY+ KPF EEL AR++ALL+R Sbjct: 62 GLDLLLHIRNQGVKTPVLILTAKDTIADKLRGFNDGADDYVTKPFHREELLARMKALLKR 121 Query: 119 HNNQGESELI-VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + S+ I +G L +N + G L L +E+ LL+ L+ G+ + +E ++N Sbjct: 122 TGHLNSSDTIALGQLEINTSKHLATFNGAPLTLKGREFDLLAYLVGNPGTIITKEQIFNR 181 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANEEN 222 ++ +D+E S + +EV++ NLR ++ A +RT+R GY++ A +E Sbjct: 182 LWGFDSETSLSVVEVYMSNLRKELKHAGSDLSLRTIRNAGYIVEAPDEQ 230 >UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1L3_THERP Length = 224 Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 130/221 (58%), Gaps = 4/221 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VEDD + + L L + +G+ +V A E H LV+LDL LP G Sbjct: 4 ILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLPGTHGRDV 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 +R + T P+L+LTA D D + GLD+GADDY+ KPF EL AR+RALLRR + Sbjct: 64 CRALRLRHAT-PILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRRASGP 122 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY-NW 181 EL+ G++ ++ R V++ E + L P+E+ LL L+ +AG + R+ L ++ + Sbjct: 123 PVRELVYGDIRIDREARTVFIDDEPVTLRPREFDLLLALVSQAGRIISRQRLLQQVWCDH 182 Query: 182 DNEPSTNTLEVHIHNLRDKVGKARIR--TVRGFGYMLVANE 220 + + ++ TL+VH++ LR K+ K+R+R ++RG GY L +E Sbjct: 183 EIDEASRTLDVHVNRLRQKLQKSRVRIESIRGIGYRLALSE 223 >UniRef50_B4U2R0 TCS transcriptional regulatory protein ciaR n=9 Tax=Firmicutes RepID=B4U2R0_STREM Length = 224 Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +K+L+VEDD L L I + V E+G Y L++LDL LP++DG Sbjct: 2 IKLLLVEDD-LSLSNSIFDFLDDFADVTQVFDGDEGLYEAESGIYDLILLDLMLPEKDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+K +PVLI+TA++++ DK G ++GADDYL KPF LEEL RI+ALL+R Sbjct: 61 QVLKALREKDIKIPVLIMTAKESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRVG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L GNLT++ R++V + G+ + L KE LL ++ + + +++ I+ Sbjct: 121 KFNDKSLKFGNLTVDTTRKEVQVNGQAIELLGKELDLLIYILQNQNVILPKSQIFDRIWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANE 220 +D++ + + +EV++ +R K+ ++T+R GY+L ANE Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTDFVNHLQTLRSVGYILKANE 224 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VEDD L+ L + YA + + A +E Y L++LD+ LP DG+ Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR +P+L+LT RD+ DK GLD GADDY+VKP EEL AR+RALLRR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G L L+ +V ++L LTPKEYALL LM ++ + +++ Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR-----IRTVRGFGYMLVANEEN 222 +++ P + + HI LR K+ A + TV G GY L E + Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQEND 227 Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +KIL+V+DD L+ L + G ++ + E H +++LD+ +P G+ Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 HFLARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 IR + +P+L LT VGADD++ KP + EL RI L R Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRILNRLER 501 >UniRef50_C7Q2J4 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=C7Q2J4_CATAD Length = 254 Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 126/232 (54%), Gaps = 17/232 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++LIV+D+ + L + + EGYA + R A +E G LV+LD+ +P DGL Sbjct: 15 EVLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLT 74 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R+R TLPVL+LTARD D++AGLD GADDYL KPF L+EL AR+RALLRR Sbjct: 75 ACRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGAL 134 Query: 122 QGESE-------------LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSP 168 GE L +L ++ R+V G + LT EY LL + Sbjct: 135 TGEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQA 194 Query: 169 VHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 + RE + ++ +D EP++N+L+V++ +R K ++TVRG GY L Sbjct: 195 LTREQILRAVWGFDFEPASNSLDVYVMYVRKKTEFDDLPRLVQTVRGVGYAL 246 >UniRef50_Q0ICD5 Two-component response regulator n=5 Tax=Synechococcus RepID=Q0ICD5_SYNS3 Length = 295 Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 121/222 (54%), Gaps = 8/222 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+V+DD LL L ++ C T A L + LVVLD LPD DGL Sbjct: 66 QVLLVDDDPELLSFLYEEFTSDKVTCTCSKTGSKALTLLRQQRFDLVVLDWNLPDFDGLE 125 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN- 120 R+R T PVL+LTA D L ++ LD GADDY+ KPF L ELHAR+RA LRR Sbjct: 126 ICQRLRSSGNTTPVLMLTAHDDLDARVQALDYGADDYISKPFELRELHARVRARLRRGTF 185 Query: 121 ---NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + + +L +G+L +N+ +R V G +L LT +E+ LL L+ G +HR+ + Sbjct: 186 AAAEKQKEQLELGDLRINLLKRAVHRGEHKLSLTQREFDLLCYLIGHHGEVLHRKNILEG 245 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYM 215 ++ NTL+V++ LR KV K + T+RG G+M Sbjct: 246 VWGAPFVGDPNTLDVYMGYLRRKVEKPDHPQLLHTIRGIGFM 287 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 133/225 (59%), Gaps = 14/225 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTAR----MAEQSLEAGHYSLVVLDLGLPD 56 M++L+VED+ LL+ ++ + E + D+ +A Q++ Y ++LD+ +P Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNI----YDAILLDVMMPG 64 Query: 57 EDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 DG + +IR +K PVL LTARD+L D++ GLD G DDY+VKPF EL ARIRALL Sbjct: 65 MDGFEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALL 124 Query: 117 RRHNNQGESELI-VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 RR + + I + L + V + G+ + L+ K+Y LL L+ +G + RE ++ Sbjct: 125 RRSGSLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIF 184 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 + ++ +D++ + +EV++H+LR K+ + I+TVRG GY+L Sbjct: 185 DRVWGFDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 229 >UniRef50_Q020N6 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q020N6_SOLUE Length = 250 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 IL+VEDDT L + G+ ++ R G + L++LD+ LP DG Sbjct: 26 SILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGFE 85 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--H 119 L ++R++ T PV++LTAR + +D++AGL+ GADDYL KPF +EL ARIRA+LRR H Sbjct: 86 VLRQLRKRSAT-PVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGH 144 Query: 120 NNQGESELI-VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + +++ L ++ R VW GE + +T E+ +L L+ AG V R+ L + Sbjct: 145 TDAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTAVL 204 Query: 179 YNWDNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYMLVANE 220 Y P +L+VHI +LR K+ ++ IRT+RG GY +A E Sbjct: 205 YQRPATPYERSLDVHISHLRKKLERDDRSVIRTIRGVGYQFMAGE 249 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD +L L+ + + YA + ++ + +A +Y L++ D+ LP DG+ Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R + P+L++TA+D +D+I GLD GADDYL+KP L EL AR+RALLRR + Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L VG L L+ +V + L LTPKEY+LL L+ R + ++ Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDK---VGKAR-IRTVRGFGYMLVANE 220 +D+ P T++ HI LR K VG I V G GY L + + Sbjct: 181 FDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLKSQK 224 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 + +L+V+DD L+L L + G + + L++ L++LD+ +P G+ Sbjct: 500 VNVLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGI 559 Query: 61 HFLARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 +R + LP++ LTA + G DDY+VKP EL ARI L R Sbjct: 560 ELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLER 619 >UniRef50_C3WHY2 Two-component response regulator n=8 Tax=Fusobacterium RepID=C3WHY2_9FUSO Length = 236 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +KIL+VEDD + + L L + + Y DS + E +Y +V+LDL LP + G Sbjct: 14 IKILLVEDDKNIQRLLTLELRHKEYLVDSAYDGEQGMELFERNYYDVVLLDLMLPKKSGK 73 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+ T P++++TA+D++ DK+ LD+GA+DY+ KPFA+EEL ARIR R Sbjct: 74 ELCQEFRKLNNT-PIIVITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 132 Query: 121 NQGESELIV-GNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 N + + + ++ L++ ++V++ EE+ LT E+ +L M G RE + D++ Sbjct: 133 NFVDKQFYLEKDIKLDLSAKRVYLREEEINLTKTEFLILEYFMKNKGLSCSREKIIIDVW 192 Query: 180 NWDNEPSTNTLEVHIHNLRDKV--GKARIRTVRGFGYMLVANEE 221 +D + ++V+I++LR K+ I T+RGFGYM E+ Sbjct: 193 GYDFDGEEKIVDVYINSLRKKIDLDNRYIHTIRGFGYMFQYKED 236 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 119/223 (53%), Gaps = 9/223 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILI+EDD L+ + A D+ + + Y L+VLD LP DGL Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + PVLIL+A + + +++ GL G DDY+ KPFA EL R+ L +R Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQR-- 118 Query: 121 NQG---ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 NQG +EL+VG L + + R V + EL+L PKE+ LL LM + R +L+ Sbjct: 119 NQGIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEA 178 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216 ++++ +P TN ++VHI LR K + I TVRG GY L Sbjct: 179 VWDYHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRL 221 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 126/218 (57%), Gaps = 5/218 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+ED+ + L+ + GY + V + L+ Y L++LD+ LPD +G Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ +PV+ LTA+D + D++ GL++GADDYL KPF+ EL ARI++LLRR Sbjct: 61 SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E+EL + +L +++ +VW G + L+ E+ LL L++ V R + ++++N Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGY 214 + + TN ++V + LR K+ + I T+RG GY Sbjct: 180 INFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGY 217 >UniRef50_B9Y5E4 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5E4_9FIRM Length = 219 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 129/216 (59%), Gaps = 4/216 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+L+VED+ + + +A T GYA ++ R ++LE G L++LD+ LP EDG Sbjct: 3 KLLLVEDEAPIRTLMRMALTTAGYAALEMSDGRTLIETLEQGGIDLILLDVMLPGEDGFT 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L +IR +Y +PV+ ++AR L DK+ L GADDY+ KPF + EL AR+ ++LRR Sbjct: 63 LLDKIR--RYQVPVIFVSARSQLADKVQALQAGADDYITKPFEMMELLARVESVLRRTGR 120 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 + S L NLT++ +RQV+ + LTPKE+ L L+ ++RE + +++ Sbjct: 121 KN-SVLKFQNLTIDEDQRQVYGPAGVIELTPKEFDLFVFLIRNRNIALYREEILEKVWHD 179 Query: 182 DNEPSTNTLEVHIHNLRDKVGKAR-IRTVRGFGYML 216 D E +T T+++HI +LR K+G ++ I +V GY L Sbjct: 180 DYEGTTRTVDMHIASLRKKLGLSKQIVSVYKIGYRL 215 >UniRef50_A3K9L3 Two-component system regulatory protein n=1 Tax=Sagittula stellata E-37 RepID=A3K9L3_9RHOB Length = 233 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 127/220 (57%), Gaps = 3/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED + ++ + G A D V + A +L Y +++LD+GLPD G Sbjct: 11 MRLLLVEDTADVADAIVASFGHRGDAVDHVNSVEDALGALAVQDYDVIILDIGLPDGLGT 70 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L+ +R + PV++LTAR + D++A LD GADDYL+KPF L ELHAR+RA+LRR + Sbjct: 71 DILSSLRSRGTPTPVMMLTARSNIEDRVAALDKGADDYLIKPFDLRELHARVRAMLRRQD 130 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + G++T + V + G + L +E+ +L L+ V ++ L +Y Sbjct: 131 VDRSGVIEFGDITFDPAGLTVEVKGRPVALVRREFNVLEILLANRERVVPKDKLLERMYA 190 Query: 181 WDNEP-STNTLEVHIHNLRDKVGKAR--IRTVRGFGYMLV 217 +++E S N +E+++ LR K+ ++ I+T+RG GY LV Sbjct: 191 FNDEDVSPNAVELYVGRLRKKLCNSQITIKTLRGLGYQLV 230 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 123/234 (52%), Gaps = 21/234 (8%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAG-----------HYSLVV 49 M IL+VEDDT + L + EGY V AR LEA +++ Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGY---KVRVARDGVSGLEAARDLDAMLRELDQRGVIL 57 Query: 50 LDLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELH 109 LDL LP G+ +R PVL+LTA + D++ GL GADDYLVKPF+ EEL Sbjct: 58 LDLMLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELL 117 Query: 110 ARIRALLRRHNNQ---GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAG 166 ARI ALLRR +Q L GN+ L+ +V GEE++LT +E ALL + G Sbjct: 118 ARIEALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPG 177 Query: 167 SPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 + RE + ++++ D +P TN ++V++ LR K+ + I TVRG GY L Sbjct: 178 RVLSRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRL 231 >UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=16 Tax=Firmicutes RepID=B7GFY6_ANOFW Length = 226 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 129/221 (58%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYA-CDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDG 59 M++L+ EDD L + ++ + +G D V A A Y +++LD LP+ DG Sbjct: 4 MRVLLAEDDIYLGELIVHLLKKKGVEHVDWVQEGEDAYDYALASFYDVIILDWMLPNGDG 63 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 + R+R++ Y +L+LTA+D + D++ GL+ GADDYLVKPF ++EL AR++AL RR Sbjct: 64 VSICQRLRKRGYHGAILMLTAKDAVQDRVEGLEAGADDYLVKPFEIDELMARLKALSRRT 123 Query: 120 NNQGESELI-VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + E++ G +N + GE++ILTP+E+ LL L+ G + R+I+ + I Sbjct: 124 FAPIQEEIVRWGAFEVNRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRI 183 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR---IRTVRGFGYML 216 + +D + S T++ + LR K+G + I+TVRG GY + Sbjct: 184 WGYDADVSMKTIDATVKLLRKKIGDEQQQLIKTVRGVGYTI 224 >UniRef50_Q2SKY7 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=Q2SKY7_HAHCH Length = 223 Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 120/220 (54%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++ED +L Q L++ GY D+ Y L++LD+ LP +G Sbjct: 1 MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R VL+LTARD + D++ GL GADDYLVKPF +EL ARI ALLRR Sbjct: 61 ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +G LT+N+ +QV + G + L P+EYALL L L V R+ + + IY+ Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 EP +N ++ I +LR + + I T RG GY + Sbjct: 181 DKIEPMSNVVDSAISSLRKMIDHKDRPSFILTRRGHGYQI 220 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 119/222 (53%), Gaps = 6/222 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M ILI+ED+ L + L + + EGY D + + + Y +++LDL LP G Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R++K V+IL+A+ L DKIAGLD GADDYL KPF ++EL ARIRA+ RRH Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEE--LILTPKEYALLSRLMLKAGSPVHREILYNDI 178 EL+ +L LN+ + L L KE+ L+ LM + R + I Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199 Query: 179 YNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 + +D+E N ++V+I LR K+ IR VRG GY L Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTL 241 >UniRef50_A9AUH9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AUH9_HERA2 Length = 229 Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 121/223 (54%), Gaps = 8/223 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEA-GHYSLVVLDLGLPDEDGL 60 +ILIV+DD +L G+ + GY + A L+A SLV+LDL LPD DG Sbjct: 3 RILIVDDDPAILSGVSTLLEQAGYEIAQAASLAQARSHLQAFNPPSLVILDLMLPDGDGF 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IRQ LP+L+L+ARD L D++ GL VGADDYL KPFA EL AR+RA+LR Sbjct: 63 ELCRQIRQGGQYLPILMLSARDELQDRVEGLTVGADDYLTKPFAPAELVARVRAILRLAQ 122 Query: 121 NQGES--ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 +Q E+ G L + ++ W + L LTPKE +L +LM + R L + Sbjct: 123 HQRETIGSFECGKLRFDCELQRAWWDEQLLELTPKESGVLLQLMRQPSHVWGRLALLQTV 182 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYML 216 + + + ++V + LR K+ + I+TVRGFGY L Sbjct: 183 WGTNFLGDSRIVDVCVQRLRAKINQLDANADPIQTVRGFGYRL 225 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 10/230 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++++++ED+ + + + EG+ + +++ +VVLD+ LP DGL Sbjct: 15 VRVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGL 74 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 RI Q +PVL+LTARD TD + GL VGADDY+ KPF++ EL AR++ALLRR Sbjct: 75 EVCRRI-QADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVR 133 Query: 119 -------HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHR 171 ++ + L +G+L ++ R+V G LTP E+ LL L G+ + R Sbjct: 134 RAAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTR 193 Query: 172 EILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 E L D+++W + T T++ H+ LR K+G +RTV G GY L E+ Sbjct: 194 EQLLADVWDWVDATGTRTVDSHVKALRRKLGSDLVRTVHGVGYALEIPED 243 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILIVEDD L L + YA + + A + ++ Y L++LD+ LP DG+ Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR +P+L+LT D+ +K GLD GADDY+VKPF EEL AR+RALLRR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L GNL L+ +V L LTPKEYALL + + ++ I++ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR-----IRTVRGFGYMLVANEE 221 +++ P + HI LR K+ A + TV G GY L A EE Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEE 226 Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+L V+DD +L L G ++ R ++L + L++LD+ +P +G+ Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 FLARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 +R + LP+L LT VGADD++ KP EL RI L R Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 500 Score = 40.4 bits (93), Expect = 0.047, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+ +DD L+ L + GY +V T + A S H ++VLDL +P +G Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 LARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKP 102 +A +++ T +P++I + T+ D D++ KP Sbjct: 1441 MAMLKESTETKHIPIVICSVYKPTTNNQPSSDFV--DWISKP 1480 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD L L Y D + Q + +Y L +LD+ +P DG+ Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + P+++LTA+D+ +D+I GLD GADDY++KP LE L ARIRALLRR N Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S + GNL LN+ +V E + LT KEYALL ++ +R ++ +++ Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANEE 221 P T+ HI LR K+ A I TV G GY L +E Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRLRKADE 225 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGL--PDEDGL 60 IL+++DD L + + + AQT + T +A Q + ++++LDL EDG Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + Q + LP++I T R++L D+I +GA +L KP A ++ + +L H Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKPLAAHQILKTVTDIL--HE 511 Query: 121 N 121 N Sbjct: 512 N 512 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 122/232 (52%), Gaps = 16/232 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I++V+D+ + + L+ + G+ ++ + A + +E L+VLD+ LPD DG Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 RIRQ+ PVL LTARD DK+ GL VG DDY+ KPF+LEE+ ARIRA+LRR Q Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 123 GESELI--VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E + I VG+L +N V G+ + L+P EY LL LM G + + + + ++ Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 181 WDNEPSTNTLEVHIHNLRDKVG--------------KARIRTVRGFGYMLVA 218 +D +E +I LR KV I T RG GYM+ A Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRA 245 >UniRef50_UPI0001AEC3E2 two component transcriptional regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC3E2 Length = 246 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +++L+VEDD L +I + E CD A ++ + +VVLD+ LP DGL Sbjct: 2 IRVLLVEDDMGLAGNIIDYLELEDMVCDHAANGVAALSLIQKHPFDVVVLDINLPRLDGL 61 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R+ P+++LTARD L +K+ G GADDYLVKPF + EL AR+ AL R + Sbjct: 62 SVCERVREDGNDTPIIMLTARDQLENKLEGFQKGADDYLVKPFDMPELVARVFALAHRRS 121 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +Q + +L GN++L MG V + + L+P + LL L+ + G + RE L + ++ Sbjct: 122 SQVK-KLRFGNVSLAMGSEVVSVENVPIKLSPTAFTLLKALLQQQGKVMPRERLLDAVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANEE 221 D P +N L+VH+HNLR + +A ++ V G G+ + E Sbjct: 181 ED-APESNALKVHLHNLRKSLVQANASIEVKAVAGTGFCVTLKPE 224 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VEDD L + + A +++ Y + T + + E Y L++LDL LP DG+ Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F + R+K P+L++T +D + K+ LD GADDYLVKPF ++EL AR+RALLRR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L LN QV GE + LT KEY +L + + L +++ Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR-----IRTVRGFGYMLVAN 219 +D P+ N + I +LR K+ KA I TV G GY L N Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKN 224 Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KI+IV+DD LL+ + + G++ + ++ LE L++LD+ +P+ G+ Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 FLARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 +R + LP+L L+ G GADDY+ KP EL RI Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60 +LIV++D +L+Q ++ A+ G T A++++ +++LD+G PD E L Sbjct: 375 LLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEICL 434 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEEL 108 L IRQ +P +I + ++ + ++ +GA +L KP E + Sbjct: 435 ELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKPLPPERI 482 >UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria RepID=Q1NLC6_9DELT Length = 298 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 129/225 (57%), Gaps = 18/225 (8%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L ++DD +L+ L + GY + T+ A + L+ LV+LDL LPD DGL F Sbjct: 75 LLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGLEF 134 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 +++ LPV++LTARD ++DK+ GL++GADDY+VKPF EL ARI+A LR + Sbjct: 135 CCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANPGA 194 Query: 123 GESE--LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHRE----ILYN 176 G + L GNL +++ + V + G+E+ LT KE+ LL+ LM V RE L+ Sbjct: 195 GTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRLWR 254 Query: 177 D--IYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGY 214 D IY+W + ++VHI +LR KV + I TV G GY Sbjct: 255 DSKIYSW-----SRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGY 294 >UniRef50_B7KAD7 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KAD7_CYAP7 Length = 614 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 119/220 (54%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VEDD L L + Y D T + A + Y L++LD+ LP DG+ Sbjct: 1 MKILLVEDDPLTRTVLTQTLKDHHYTVDVATDGQTAATLTQVSQYDLLLLDVVLPSLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + + P+++LTARD+ TD+I GLD GADDY+VKP LE L ARIRAL RR Sbjct: 61 SLCQQLRFQGFQEPIILLTARDSSTDQIIGLDAGADDYIVKPVNLETLMARIRALFRRKK 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N S + NL +N+ +V G + LT KEY+LL ++ + R ++ +++ Sbjct: 121 NISSSVIHWENLQVNLNNCEVNSHGNSIHLTAKEYSLLELFLMNSQRIFSRRVILEKLWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYML 216 + P T+ HI LR K+ A I TV G GY L Sbjct: 181 LADSPGEETVSTHIKCLRQKLKAAGVPDPIETVYGLGYRL 220 Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60 ILI++DD L + + L A + T ++A + + ++++LDL EDG Sbjct: 365 ILIIDDDLALAERIRLEALAWNLRVEIATNLQIAREIIIQLSPNIILLDLNFETAREDGF 424 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + + + LP+++ T R++L+D++ +GA +L K +E+ + + ++H Sbjct: 425 SLLEELGKTRPNLPIVVFTGRESLSDRVKVSRLGAKAFLHKSLPAQEILKTVTNVFKQHL 484 Query: 121 NQGESELIV 129 + ++ +++ Sbjct: 485 DHSKNRVMI 493 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 5/119 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +++IV+DD+ +L ++ G ++ + Q L + L++LDL +P+ +GL Sbjct: 490 RVMIVDDDSAILSQIVDLLTPWGIEVITLKYSHNFWQELTTNNPDLLILDLEIPNFNGLD 549 Query: 62 FLARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 +R K LP++ L+ + GADDYL K + +EL RI LRR Sbjct: 550 LCKVVRHDPKWQNLPIIFLSIYNEENIIQQMFLAGADDYLNKTYEPQELVNRI---LRR 605 >UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I3L5_9CLOT Length = 227 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 10/224 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++LIVEDD + L + EGY SV + + A L L++LDL LPD G Sbjct: 4 QVLIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNLPDGSGFD 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 F I KYT+P++ILTA++ + DK+ GL++GADDY+ KPF ++E+ +RI+A+ RR Sbjct: 64 FCKDI-NAKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRIEK 122 Query: 122 QGESE-----LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 + I N+ +N R V E + L PKEY LL + RE L + Sbjct: 123 SASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSREQLID 182 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 +I+ + + T+++HI +R K+ + I TV G GYM+ Sbjct: 183 NIWEFSYDGDIRTVDIHIRRIRSKLDTNGHPSVIETVFGVGYMM 226 >UniRef50_D0MIF5 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIF5_RHOM4 Length = 231 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL+VEDD L + L + EGY D V AE ++A HY +++D LP DG Sbjct: 1 MWILLVEDDERLARALARGLREEGYQVDRVADGVEAEARVQASHYDALIVDWRLPRMDGQ 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + R+R+ Y +P+L+LTA D L ++AGLD GADDYL KPFA EEL AR+RALLRR Sbjct: 61 TLVRRLREAGYQMPILMLTALDDLEHRVAGLDAGADDYLGKPFAFEELLARLRALLRRSP 120 Query: 121 NQGESELI-VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 +++I +G L +N RRQV +G L L PKEY LL L G + R + ++ Sbjct: 121 VWQATDVIRLGPLEINERRRQVRVGEYVLPLRPKEYDLLRFLARHPGEVLSRTRIAEQVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYML 216 S NT++V + LR K+ +A +I TVRG GY L Sbjct: 181 GDPFYVSDNTIDVTVSGLRQKLSEATPALQIETVRGVGYAL 221 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 126/224 (56%), Gaps = 13/224 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLE---AGHYSLVVLDLGLPDED 58 KILI++DD + + EGY VT A ++ L L++LD+ +PD D Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGY---EVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 GL R+R K +P+L++T D++ D++ GL+ GADDYLVKPFA EEL AR++ALLRR Sbjct: 61 GLEVCKRLR-KDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRR 119 Query: 119 --HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 H + + +LI +L +++ RQ + G + + E+ LL M + RE+L + Sbjct: 120 LDHKKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMD 179 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 ++ +D +N LEV++ LR K+ I TVRG GY+L Sbjct: 180 RVWGFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVL 223 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 9/227 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+ED+ L L EG T + + + ++LD+ LPD DG Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 AR+R++ T+P++++TARD + D+I GL GADDYL KPFA EEL AR+ A+ RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 121 N------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 Q + + VG+L + + G + LT KE +L LM G+ + R + Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDK---VGKARIRTVRGFGYMLVA 218 ++ +++P TN +EV++ LR K +G + VRGFGY L+A Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALGPPVVENVRGFGYRLIA 227 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 129/227 (56%), Gaps = 15/227 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGY----ACDSVTTARMAEQSLEAGHYSLVVLDLGLPD 56 M+IL+VEDD + L + EGY ACD +A++ G + L++LD+ LP Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQE----GDFQLILLDIMLPS 56 Query: 57 EDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 +GL +R KK +P+++LTA D D I GL +GADDY+ KPFA +EL ARI A+ Sbjct: 57 LNGLEVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVT 116 Query: 117 RRHNNQGESELIV--GNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 RR N+ ++ I+ G L + V + EE+ LT KE A+L LM G + RE + Sbjct: 117 RRTPNEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERI 176 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYML 216 ++++ + +P TN ++V+I LR K+ G++ I T RG GY L Sbjct: 177 LSNVWGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRL 223 >UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococcoides RepID=Q3Z753_DEHE1 Length = 222 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 121/224 (54%), Gaps = 12/224 (5%) Query: 1 MKILIVEDDTLLLQGLILAAQTEG----YACDSVTTARMAEQSLEAGHYSLVVLDLGLPD 56 M+IL+++DD L Q L A G YACD + A S + L++LD+GLPD Sbjct: 1 MRILLLDDDKCLCQTLERALGEAGHVVEYACDGASGEYFAANS----EFDLLILDIGLPD 56 Query: 57 EDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 ++G+ ++R VL+LTARD+L K+ GLD GADDYL KPFA +EL ARIRAL Sbjct: 57 KNGIEVCRKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQ 116 Query: 117 RRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 RR + + ++ + +V G E+ LT EY +L + G + R +L Sbjct: 117 RRPPLRVLPVVETAGISFDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEE 176 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 ++ ++ +NT++ I LR K+G I+T+RG GY L Sbjct: 177 HLWGAESTSVSNTIDSLIKKLRQKLGWDAKSGPIKTLRGAGYRL 220 >UniRef50_D1U362 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U362_9DELT Length = 236 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 126/231 (54%), Gaps = 13/231 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+L+++DD L + L + EG+A D+ + Y L++LD+ LPD G + Sbjct: 3 KVLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEYCLIILDVMLPDTSGFN 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 L+R+R +PV++LT R D++ GL++GADDY+ KPF L EL AR+RA+LRR Sbjct: 63 VLSRLRGDS-AVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVLRRVGP 121 Query: 119 --------HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVH 170 + + ++ VG + +N G +QV + + LT E+ L+ +L L G+ V Sbjct: 122 ERGDGDPQQPPRPQGDIKVGEILINRGAQQVTLSDAPVHLTSTEFGLIEQLALNLGNIVQ 181 Query: 171 REILYNDIYNWDNEPSTNTLEVHIHNLRDKVGK-ARIRTVRGFGYMLVANE 220 RE L D + L VH+ NLR K+G A I+T+RG GY+L + Sbjct: 182 REDLMEKALGRDTDFDDYVLNVHMSNLRRKLGGHASIKTIRGRGYLLAVPQ 232 >UniRef50_Q5SJK6 Response regulator n=6 Tax=Deinococci RepID=Q5SJK6_THET8 Length = 240 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 11/221 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYA---CDSVTTARMAEQSLEAGHYSLVVLDLGLP-D 56 +++L++ED+ L Q + A +GY S+ AR A LE L+VLD+ LP D Sbjct: 22 VQVLLLEDEPRLGQAVARALAAQGYGVRWARSLGEAREAFLELEP---DLMVLDVRLPED 78 Query: 57 EDG-LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRAL 115 EDG F R+ Y P+L LTARD L D++ GLD+G DDYLVKPF LEEL AR+RAL Sbjct: 79 EDGGFRFAKEAREAGYKGPILFLTARDALEDRVQGLDLGGDDYLVKPFHLEELLARVRAL 138 Query: 116 LRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 LRR + S + +G L +++ R V++ G + L+ KE+ALL L+L G E L Sbjct: 139 LRRASEVKASRVRLGPLEVDLAGRGVYLAGRRVDLSLKEFALLETLLLHPGRVFAPEELA 198 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 ++ D E ++V++H LR K+ +RTV G GY L Sbjct: 199 ERVFG-DPE-KVGAVKVYVHYLRQKLFPEVVRTVPG-GYRL 236 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 6/222 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++ED+ + + GY D+V+ R Y+L++LD+ LP DG Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R K T PV+ LTARD++ D++ GLD GA+DYLVKPF+ EL AR+RA LR+H+ Sbjct: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L + L ++ V + LT KE+ LL L +AG + R ++ ++I+ Sbjct: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVA 218 + + TNT++V I LR KV + I T+RG GY VA Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P30843 Transcriptional regulatory protein basR n=126 Ta... 334 1e-90 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 327 1e-88 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 327 3e-88 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 322 4e-87 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 322 7e-87 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 319 4e-86 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 319 6e-86 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 319 6e-86 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 318 7e-86 UniRef50_Q026B5 Two component heavy metal response transcription... 318 1e-85 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 317 3e-85 UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax... 316 3e-85 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 316 4e-85 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 316 4e-85 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 315 7e-85 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 314 1e-84 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 314 1e-84 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 314 1e-84 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 313 2e-84 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 313 4e-84 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 312 4e-84 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 312 5e-84 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 312 6e-84 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 312 6e-84 UniRef50_C6CH89 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 312 7e-84 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 312 7e-84 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 310 2e-83 UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax... 310 2e-83 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 310 2e-83 UniRef50_UPI00017468BB two component transcriptional regulator, ... 310 2e-83 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 310 2e-83 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 310 3e-83 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 309 3e-83 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 308 6e-83 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 308 6e-83 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 308 7e-83 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 308 8e-83 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged ... 308 9e-83 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gamma... 308 1e-82 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 307 2e-82 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 307 2e-82 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 306 3e-82 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 306 3e-82 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 306 4e-82 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=... 305 6e-82 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 305 8e-82 UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammapro... 305 1e-81 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 304 1e-81 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 303 2e-81 UniRef50_B8G179 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 303 2e-81 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 303 2e-81 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_Q2RPG3 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_B8G869 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 302 5e-81 UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydroba... 302 6e-81 UniRef50_Q20YF2 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria R... 302 7e-81 UniRef50_A5WDA5 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria... 301 1e-80 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 300 2e-80 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 300 2e-80 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 300 2e-80 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_B2HUW9 Response regulator consisting of a CheY-like rec... 299 3e-80 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 299 5e-80 UniRef50_Q97LA9 Response regulator (CheY-like receiver domain an... 298 6e-80 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 298 6e-80 UniRef50_B2JHN0 Two component transcriptional regulator, winged ... 298 6e-80 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaprot... 298 1e-79 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 298 1e-79 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 298 1e-79 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 298 1e-79 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_B0C620 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_C7MME5 Response regulator with CheY-like receiver domai... 297 1e-79 UniRef50_UPI00016C506D two component transcriptional regulator, ... 297 2e-79 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_C1SIE7 Response regulator with CheY-like receiver domai... 296 3e-79 UniRef50_A9BQG9 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_Q2S8G9 Response regulator consisting of a CheY-like rec... 296 4e-79 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 296 4e-79 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 296 4e-79 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 296 4e-79 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 295 5e-79 UniRef50_Q6FA81 Putative two-component response regulator n=1 Ta... 295 5e-79 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 295 5e-79 UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acineto... 295 6e-79 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 295 7e-79 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 295 9e-79 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 295 9e-79 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 295 9e-79 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 295 1e-78 UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter... 294 1e-78 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 294 1e-78 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 294 1e-78 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 294 2e-78 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 294 2e-78 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellula... 293 2e-78 UniRef50_A4CE30 Probable two-component response regulator transc... 293 2e-78 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 293 2e-78 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 293 2e-78 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 293 2e-78 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 293 3e-78 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 293 3e-78 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 293 4e-78 UniRef50_C1ZD82 Response regulator with CheY-like receiver domai... 292 4e-78 UniRef50_Q6AQP4 Probable two-component system response regulator... 292 5e-78 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 292 5e-78 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 292 6e-78 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 292 7e-78 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 292 8e-78 UniRef50_C6VUR1 Two component transcriptional regulator, winged ... 292 8e-78 UniRef50_Q2BR69 Two component Transcriptional regulator, Winged ... 292 9e-78 UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellula... 291 1e-77 UniRef50_Q3M194 Multi-component transcriptional regulator, winge... 290 2e-77 UniRef50_Q480M1 Response regulator n=1 Tax=Colwellia psychreryth... 290 2e-77 UniRef50_C6RM27 Transcriptional regulatory protein QseB n=1 Tax=... 290 2e-77 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 290 2e-77 UniRef50_UPI0001C16C1D manR (Two component Transcriptional regul... 290 3e-77 UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=... 290 3e-77 UniRef50_C1ABP4 OmpR family two-component response regulator n=2... 289 3e-77 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 289 4e-77 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 289 4e-77 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 289 4e-77 UniRef50_Q20WN2 Two component transcriptional regulator, winged ... 289 5e-77 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 289 5e-77 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 289 5e-77 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 288 6e-77 UniRef50_C6Q063 Two component transcriptional regulator, winged ... 288 6e-77 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 288 7e-77 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 288 7e-77 UniRef50_Q3MAE8 Response regulator receiver modulated diguanylat... 288 8e-77 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 288 9e-77 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 288 9e-77 UniRef50_C2KX66 Two component response regulator n=2 Tax=Lachnos... 288 9e-77 UniRef50_B7S3C0 Response regulator receiver domain protein n=1 T... 288 1e-76 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 287 1e-76 UniRef50_C1TR79 Response regulator with CheY-like receiver domai... 287 1e-76 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 287 1e-76 UniRef50_A1RNU1 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 287 2e-76 UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec... 287 2e-76 UniRef50_B8IU63 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_Q1H1R2 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_A5FBX2 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_A2SKN3 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Fra... 287 2e-76 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 287 2e-76 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 287 2e-76 UniRef50_A6TPN8 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococ... 287 3e-76 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 286 3e-76 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 286 3e-76 UniRef50_A7IE82 Two component transcriptional regulator, winged ... 286 3e-76 UniRef50_B1HMR9 Response regulator n=1 Tax=Lysinibacillus sphaer... 286 4e-76 UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax... 286 5e-76 UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobac... 286 5e-76 UniRef50_UPI0001745DFF Response regulator consisting of a CheY-l... 286 5e-76 UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobi... 285 6e-76 UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeri... 285 6e-76 UniRef50_C1F2N1 DNA-binding response regulator n=1 Tax=Acidobact... 285 7e-76 UniRef50_A1TXC3 Two component transcriptional regulator, winged ... 285 7e-76 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 285 7e-76 UniRef50_D1C280 Two component transcriptional regulator, winged ... 285 7e-76 UniRef50_Q2SKY7 Response regulator consisting of a CheY-like rec... 285 8e-76 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 285 9e-76 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 285 1e-75 UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobac... 284 1e-75 UniRef50_Q31JS2 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_C8W872 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_C1XYD1 Response regulator with CheY-like receiver domai... 284 1e-75 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_C6QB49 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_B2TDT5 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_A6W2Y0 Two component transcriptional regulator, winged ... 284 2e-75 UniRef50_B9JKK7 Two-component response regulator protein n=1 Tax... 284 2e-75 UniRef50_D1VIP6 Two component transcriptional regulator, winged ... 284 2e-75 Sequences not found previously or not previously below threshold: UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 299 3e-80 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 295 5e-79 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 293 2e-78 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 293 3e-78 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 292 5e-78 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 292 8e-78 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 292 8e-78 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 291 1e-77 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 290 2e-77 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 290 2e-77 UniRef50_A9HHL1 Probable two-component response regulator transc... 288 1e-76 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 287 1e-76 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 286 4e-76 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 285 5e-76 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 285 6e-76 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 285 6e-76 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 285 6e-76 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 285 8e-76 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_UPI0001B559F0 two-component system, response regulator ... 284 1e-75 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 284 1e-75 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 284 2e-75 UniRef50_C9ZA01 Putative two-component system response regulator... 284 2e-75 >UniRef50_P30843 Transcriptional regulatory protein basR n=126 Tax=Gammaproteobacteria RepID=BASR_ECOLI Length = 222 Score = 334 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 222/222 (100%), Positives = 222/222 (100%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 135/222 (60%), Gaps = 4/222 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ + + + A + EG+ D + A + A Y VLD+ LP DG+ Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R++ +LP+L+L+AR DKI GL+ GADDYL KPF+++EL AR+RAL+RR Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 G S VGNLTLN+ R+V+ G +++ LT KE+++L LM G R + ++N Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVA 218 + +P TN ++V+I LR K+ + I+TVRG GY + A Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIEA 267 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L EGYA D V A Y +VLDL LP DG Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R+ PVL+LTAR + D+I GLD GADDYL KPF+ EL AR+RAL+RR Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + L +G+L L+ +V G L L+ KE+ALL LM + R + + +++ Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANEEN 222 + + ++N ++ ++ +R K+ G + I TVRG GY L E Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLRTPAET 255 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 134/224 (59%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAG--HYSLVVLDLGLPDED 58 MKILI+ED+ L L + EGY D A+ +E Y LV+LD+ LP D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 G+ +R K + P+L+LTA+D + DKI GL+ GADDYLVKPF+ EEL ARIRALLRR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 N + L V +++L+ ++V+ G E++LT KE+A+L LM + +E + + + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 + ++++ +N +E HI NLR K+ + R I T+RG GY + Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIKE 224 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 136/226 (60%), Gaps = 4/226 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L + + E Y DS A + +E Y ++LD+ LP DG Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + RIR KK +P+L+LTARD + DK+ GLD GADDYLVKPF EEL ARIR LLRR++ Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ + V NL +++ + V+ G + L+ +EY++L L+ G + RE + + I+N Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVANEEN 222 ++ E TN ++V+I LR K+ + I T+RG GY+L + EN Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVLRVDNEN 226 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + + + EG+ D + +Y ++LD+ LP G+ Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 HFLARIR-QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 +R ++K +P+L+LTA ++ +++ GL+VGADDY+ KPF L EL AR+RAL+RR+ Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + L G+L +N+ R+V GE L L+ KE++LL M G RE + + ++ Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANEE 221 EP +N ++V++ LR K+ +I TV GY L ++ Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLKKEDD 226 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 322 bits (826), Expect = 7e-87, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VED+ + ++ + +GY + + Y ++VLD+ LP DGL Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ T+PV+++TAR L +++ GL++GADDYL KPF L+EL ARI+AL RR + Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + S + VG+L +N+ R+V GE + LT +E+ LL LM G + R + ++ Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVAN 219 +D +PSTN ++V + LR KV I TVRG GY + Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRMRKE 239 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ L L + YA D Y L +LD+ LP GL Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ PVL+LTA+DT+ D++ GLD GADDYLVKPF +EL AR+RAL RR Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 G + G L++ R V GE L LT KE+ LL M + +E++ + ++ Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVAN 219 D + N +E ++H LR K+ + I TVRG GYM + Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMFHPD 224 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 84/219 (38%), Positives = 126/219 (57%), Gaps = 4/219 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VED+ L Q + L + EGY V + + L++LD LP GL Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 R+RQ +P+++LTA+D ++D++AGLD GADDY+VKPF LEEL AR+RA LRR++ + Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 L +L+LN R+V+ G + LT KE+ LL LM + R+ + ++ +D Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 183 NEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLV 217 +N +EV++ LR K+ K I+TVRG GY+L Sbjct: 186 FMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVLR 224 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 319 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 124/222 (55%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +++L+VEDD L + L A GY D + Y VVLD+GLP DG+ Sbjct: 29 VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 88 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+ +PVLILTARD +DK+ G D GADDY+ KPF LEE+ ARIRALLRR Sbjct: 89 SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +SEL G + L+ +V + G + LT EY LL+ LM +G V R L +Y+ Sbjct: 149 GHAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 208 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 D + +NT+EV + +R K+ I+TVRG GY+L + Sbjct: 209 QDFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLLTPPPAD 250 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 319 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 132/222 (59%), Gaps = 3/222 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD + ++ + EGYA D + Y V+D+ LP+ DGL Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + R+R ++ +PVL L+AR ++ D++ GL G DDYL KPFA EL AR++AL+RR + Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 121 NQGE-SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 E + L G++TL++ R V +GG+ + L P+E++LL L+ AG PV + ++ ++ Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLVAN 219 ++ +P TN ++V + LR K+ RI T+RG GY+ A Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPDKTRIETLRGVGYVFKAG 227 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 318 bits (817), Expect = 7e-86, Method: Composition-based stats. Identities = 101/214 (47%), Positives = 131/214 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L +G+ A + EGY D + A +L + LV+LDLGLP DGL Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R +PVL+LTARD +D+IAGLD GADDYLVKPF + EL AR+RALLRR Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N+ E L + L+ +QV G + L KE+ LL L+ + G + R+ L +Y Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGY 214 WD + +N LEVHIH+LR K IRTVRG GY Sbjct: 196 WDEDVESNALEVHIHHLRKKFFPELIRTVRGVGY 229 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 96/225 (42%), Positives = 135/225 (60%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ + L + GYA D+ T A + Y LVVLD LPD DGL Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R +K PVLIL+AR L D++ GL+ GADDYLVKPFA EL AR+RALLRR Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E L V +L L+ RR+V G E + L PKE+ +L +M G P+ R ++ +++ Sbjct: 121 PTPE-RLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE 221 D + TN ++V+I +LR K+ + I+TVRG GYM+ A ++ Sbjct: 180 MDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIEAPDK 224 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VEDD L + + A +++ Y + T + + E Y L++LDL LP DG+ Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F + R+K P+L++T +D + K+ LD GADDYLVKPF ++EL AR+RALLRR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L LN QV GE + LT KEY +L + + L +++ Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVAN 219 +D P+ N + I +LR K+ KA I TV G GY L N Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKN 224 Score = 99.4 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KI+IV+DD LL+ + + G++ + ++ LE L++LD+ +P+ G+ Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 FLARIRQKK--YTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 +R + LP+L L+ G GADDY+ KP EL RI Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 51.7 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDG-- 59 +LIV++D +L+Q ++ A+ G T A++++ +++LD+G PD + Sbjct: 374 HLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEIC 433 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP 102 L L IRQ +P +I + ++ + ++ +GA +L KP Sbjct: 434 LELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKP 476 >UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax=Proteobacteria RepID=QSEB_ECOLI Length = 219 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 100/219 (45%), Positives = 137/219 (62%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD L+ G+ G++ D T R +++L + Y V+LDL LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+K PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR N Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q +EL GN+ L+ G+R + GE L L PKE+ALL LM AG + R+++ +Y Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 WD E ++N +EVH+H+LR K+G IRTV G GY L Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 91/218 (41%), Positives = 131/218 (60%), Gaps = 1/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + + GY+ DS A HY L+VLDL +P DGL Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 FL R R K PVLILTA+D + D + GLD GADDYLVKPF +EL AR+R L+RR++ Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 SE+ G L +++ ++ V GE++ LT KEY +L LML G + R+ + +++ Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK-ARIRTVRGFGYMLV 217 +D +N ++V I N+R K+G+ I+T RG GY++ Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEAIQTKRGLGYVVK 218 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VEDD L+ L + YA + + A +E Y L++LD+ LP DG+ Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR +P+L+LT RD+ DK GLD GADDY+VKP EEL AR+RALLRR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G L L+ +V ++L LTPKEYALL LM ++ + +++ Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEEN 222 +++ P + + HI LR K+ + TV G GY L E + Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQEND 227 Score = 91.4 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 6/116 (5%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +KIL+V+DD L+ L + G ++ + E H +++LD+ +P G+ Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 HFLARIRQ--KKYTLPVLILTARD--TLTDKIAGLDVGADDYLVKPFALEELHARI 112 IR + +P+L LT + +++ VGADD++ KP + EL RI Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRI 495 Score = 67.1 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+ +DD + Q L GY +V + A H +++LDL +P +G Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 LARIRQKKYT--LPVLI 77 +A +++ T +P++I Sbjct: 1136 MAGLKKCSDTKDIPIVI 1152 Score = 42.0 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILI+EDD L L T R A + + L++LDL LP+ DG Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264 Query: 62 FLARIRQKKY--TLPVLILTARDTLTD 86 + ++Q ++PV++ +A+D L D Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKD-LDD 1290 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIVED+ L L+ E Y+ D+ A + Y L+VLD+ +P +GL Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R +T PVL+LTA+DT+ D++ GLD+GADDYLVKPFA +EL ARIR L+RR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + +L ++ +V G + + L+ KE+A+L ++ + R+ + ++N Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 +D E +N ++V++ LR KV I TVRG GY+L Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVLRVE 235 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD +L L+ + + YA + ++ + +A +Y L++ D+ LP DG+ Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R + P+L++TA+D +D+I GLD GADDYL+KP L EL AR+RALLRR + Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L VG L L+ +V + L LTPKEY+LL L+ R + ++ Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANE 220 +D+ P T++ HI LR K+ I V G GY L + + Sbjct: 181 FDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLKSQK 224 Score = 100 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 2/112 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+V+DD L+L L + G + + L++ L++LD+ +P G+ Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561 Query: 63 LARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 +R + LP++ LTA + G DDY+VKP EL ARI Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARI 613 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD LL Q + A + Y D + + +Y L++LD+ LP DG+ Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++RQ+ Y + +L+LTA+DT TDK+ GLD GADDY+VKPF +EL ARIRALLRR N Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G+L L+ +V L LT KE++LL + R + + +++ Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 181 WD-NEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVA 218 + + P NT++ HI +LR K+ A I TV G GY L A Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKA 224 Score = 74.8 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 10/117 (8%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +I++VEDD +L + + +T G ++ + +L L++LD +P +G+ Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 FLARIRQKKYT--LPVLI----LTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 +R LPV+ L+A + ++I +GADD + KP L A I Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACI 611 Score = 42.0 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 17/107 (15%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L++ +D +++GL+ A+ +G T A + + + +V+LDL + +ED L Sbjct: 355 LLVISNDRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDI-EEDSLKL 413 Query: 63 LARIRQKKYT----------------LPVLILTARDTLTDKIAGLDV 93 L + Q+ T +PVL+ T R+ +D GL + Sbjct: 414 LIELSQRSATLGGTPSPTVGETPTPQIPVLVFTERNNFSDACGGLRL 460 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 88/226 (38%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L L+ ++ Y D V + + +++ Y LV+LD+ LP DG+ Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + +P+L+LTAR+ DK+ GLD GADDY+VKP + EL ARIRALLRR + Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L + L+ V G+ L LTPKEY LL LM + + + ++ Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEE 221 +D+ PS NT+ HI LR K+ G I TV G GY L N E Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQNLE 226 Score = 107 bits (268), Expect = 3e-22, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 2/127 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +++IV+DD +L + Q G ++ R ++LE+ H L+VLD+ +P +G+ Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 FLARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 +R + LPVL +TA+ + GADDYL KPF EL RI L+R Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616 Query: 120 NNQGESE 126 N Sbjct: 617 QNLATRT 623 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDD +L L+ + + Y D+V R + Y L+++D+GLP +DG+ Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R + +P+L++TA+D D+IAGLD GADDYL KP L EL AR+RALLRR + Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L VGNL L+ QV L LTPKEY LL + G R L ++ Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANE 220 +D+ P +++ H+ LR K+ A I + G GY L + Sbjct: 181 FDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLNPPD 224 Score = 92.9 bits (231), Expect = 6e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 2/112 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+V+DD + L+ ++L Q G + L + L++LD+ +P G+ Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441 Query: 63 LARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 +R + +LP++ LTA VGADD++ KP + EL RI Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRI 493 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 313 bits (804), Expect = 2e-84, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 8/224 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L+VED+ + + + + + Q+ + +++LD+ LP DGL Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ+ P+++LTAR+ L D++ GLD+GADDYL KPF +EELHARI+ALLRRH Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + VG L L+ R + G+ + LT +E++LL LM + R L ++ Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK--------ARIRTVRGFGYML 216 +D +P TN ++V I +R K+ I ++RG GY L Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+EDD + + L + + + D + +AG+Y L++LDL LP DG+ Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R Y +L+LTARDT +KI GLD GADDYLVKPF LEEL ARIRAL RR Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L+ G+L L+ V G + L LT KEY +L + + R + + ++ Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANE 220 +D T++ HI NLR K+ + I TV G GY L E Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRLCPKE 225 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ +L + E D+ + A + Y ++V+D+ +P DG+ Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA++R T PVL+LTA+D+L DK+ L+ GADDYLVKPF LEEL ARI AL RR+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++++ VG LT+N+ +R V GE + LT KE+ LL L + R+ + + ++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVAN 219 +D E +N ++V+I NLR K+ I+TVRG GY+L Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLKTE 223 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 4/221 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++EDD +L + L G+ C T + + + +VLD+ LPD G+ Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +IR PVL+LTA ++ D++AGL+ GADDYLVKPFA EL AR+ A+ RR Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ S+L VG L L++ R+V EL LTP E++LL LM AG V R++L ++ Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 D E TN +EVHI+ LR K+ + I+TVRG GY+L Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVLR 221 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILIVEDD L L + YA + + A + ++ Y L++LD+ LP DG+ Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR +P+L+LT D+ +K GLD GADDY+VKPF EEL AR+RALLRR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L GNL L+ +V L LTPKEYALL + + ++ I++ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEE 221 +++ P + HI LR K+ A + TV G GY L A EE Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEE 226 Score = 87.1 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+L V+DD +L L G ++ R ++L + L++LD+ +P +G+ Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 FLARIRQ--KKYTLPVLILTA-RD-TLTDKIAGLDVGADDYLVKPFALEELHARI 112 +R + LP+L LT +D + +++ VGADD++ KP EL RI Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRI 494 Score = 77.1 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+ +DD L+ L + GY +V T + A S H ++VLDL +P +G Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 LARIRQKKYT--LPVLI 77 +A +++ T +P++I Sbjct: 1441 MAMLKESTETKHIPIVI 1457 Score = 45.9 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++ILIVEDD L + + + S T R A + + L++LDL LP+ DG Sbjct: 1501 VRILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGF 1560 Query: 61 HFLARIRQKKY--TLPVLILTARD-TLTDKIAGLDVGADDYL------VKPFALE--ELH 109 + +++ + +PV++ +A+D +++ L +G ++L K F EL Sbjct: 1561 AVVDWLQKHQRLCNIPVVVYSAKDLDESERKR-LKLGHTEFLTKGRVTTKEFEQRVIELL 1619 Query: 110 ARI 112 RI Sbjct: 1620 QRI 1622 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 91/218 (41%), Positives = 116/218 (53%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILIVED+ L L + G+ D A E Y ++LDLGLP DGL Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R K PVL+LTAR L +KI GL+ GADDYL KPF + EL AR++AL+RR Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L +G + L+M QVW G + LT E+ +L LM G V R L + IY Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 D + +NT+EV I +R K I TVRG GY + Sbjct: 181 QDFDRDSNTVEVFIGRIRKKTHADLIETVRGLGYRINE 218 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L + A + E + D + +V+LD+ LP DG Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+K PVL+LTA + ++ GL++GADDYL KPF L EL AR++AL+RR Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +L+ G+L L+ R+V+ GG+E+ LT KEY +L LM+ V +E L +++ Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 +D+ ++TL HI NLR K+ K I TVRG GY++ Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYVVR 231 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VEDD +L++ L T Y D V M Y L++LD+ LP+ DG+ Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R R + YT+P+L+LTA+D +T K+ GLD GADDY+VKPF EL ARIRALLRR + Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N L G+L LN +V G L LT EY LL L+ E L + +++ Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVAN 219 ++ PS T+ H+ LR K+ I T+ G GY L A Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKAP 224 Score = 93.7 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K++I++DD L+ L + G+ ++ + L+A +VLD+ +P +G Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 FLARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 +R + LPVL L+ T + VG DDYL KP EL RI LRR Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRRL 643 Query: 120 NN 121 Sbjct: 644 QR 645 >UniRef50_C6CH89 Two component transcriptional regulator, winged helix family n=2 Tax=Dickeya RepID=C6CH89_DICZE Length = 232 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 131/222 (59%), Positives = 177/222 (79%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+LIVEDD LL +GL+ A + EGY CD +TA+ A+ + + HYSLVVLDLGLPDEDGL Sbjct: 1 MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R+ Y PVLILTARDT+ D++ GLDVGADDY++KPFAL E AR+RAL+RRH Sbjct: 61 TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +S + V N+TL++ +QV + + ++LTPKE+A+LSRL+LKAGS VHRE+L+ D+Y+ Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 WD++PS+N+LEVHIHNLR K+GK RI+T+RGFGY+L ++++ Sbjct: 181 WDDDPSSNSLEVHIHNLRQKIGKNRIKTLRGFGYLLTKDDQS 222 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LI+ED+ + + L + E +A D+ + + Y L ++D LP G+ Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R+ +PV+ LTARDTL D + GL GADDY+ KPFA EEL ARIRA LR N Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLR-QN 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L L+ + +L LTPKE+ALL L+ R + +++ Sbjct: 120 TPTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWD 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANEEN 222 + T+ ++V+++ LR K+ A I+TVRG GY++ E N Sbjct: 180 IHFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVIRTPEAN 225 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + + + Y+ DS A + Y L++ D+ +P+ DG Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F+ R+R+ K PV++LTA+DTL DKI GLD GADDY+VKPF +EL ARIR L+RR+ Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + ++ L++ ++QV GE + LT KEY +L LM S + R+ + N +++ Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVAN 219 +D + ++N ++V I N+R K+ K I T RG GY + Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGYFVKEK 223 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++IL+VED+ + L A EG+ D+V R A +++ G Y VVLD+ LP DG Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 AR+R+++ PVL+LTAR +TD+IAGLD GADDYL KPF L+EL AR+RAL RR Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G+L L+ +VW E+ L+ KE+ LL L+ + G R L ++ Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVAN 219 E +N ++V+I LRDK+ + + T+RG GY L + Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKD 245 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIV+D+ + + + Q GY C+ A L G + LV+LD+ +P DG+ Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 L +R + PV+ILTAR DK+AGL+ GADDY+VKPF+ EL AR++A+L R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + + G LT++ V + GE++ LTPKE+ LL L G + RE + + Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK--ARIRTVRGFGYMLVAN 219 +N+D T++ H+ LR +GK I TV G GY + Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGKCRGYIATVWGIGYKFDPD 296 >UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax=Gammaproteobacteria RepID=QSEB_SALTI Length = 219 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 101/216 (46%), Positives = 137/216 (63%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDDTL+ G+ G++ D T R +++L + Y V+LDL LP DG Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+K PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR + Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q SEL G +TLN G + GE L L PKE+ALL L+ G + R+++ +YN Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 WD++ S+N +EVH+H+LR K+G IRTV G GY L Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTL 216 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++EDD + L + GY D+ + Y L+++D LP+ DGL Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R PVL+L+A + D++ GL G DDYLVKPF+ EL ARI ALLRR Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 NQGE--SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 Q + + L V +L +++ R V G + L P+E+ LL M G + R +L + Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 +++ +P TN ++VHI LR K+ K + T+RG GY+L Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVLRE 224 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 90/217 (41%), Positives = 129/217 (59%), Gaps = 1/217 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L + L+ + E YA D+ Q Y ++VLD+ LP G Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 FL ++R K T PVL+LTARD + D++ GL+ GADDYL KPF +EEL ARIRAL+RR Sbjct: 72 EFLQKLRPTK-TSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q + L + +L+++ R+V GEE+ +T +EY L+ L L G V R LY +++ Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLV 217 D+ +N L+VH+ NLR K+ I T RG GY + Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLAPELITTRRGHGYSIE 227 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 105/219 (47%), Positives = 139/219 (63%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L +G+ + EGY D + +L+ + LV+LDLGLP DGL Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R +LPVLILTARD L D+IAGLD GADDYLVKPF L EL AR+RALLRR Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + ++L+ +QV G E++LTPKEY LL L+ + G RE L +Y Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 WD EP +NTLEV+I++LR K+ IRTVRG GY++ Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLVEVK 219 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDD + + YA D+V + + Y +++LD+ LP DG+ Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R ++ P+L+LTA++ D + GL+ GADDYLVKPF EL ARI+AL RR Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L NL LN +V G+ L LTP EY+LL + R+++ + I+ Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEE 221 D P T+ HI LR K+ + I+TV GFGY L +E Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGELQE 226 Score = 82.5 bits (204), Expect = 8e-15, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +++++DD L+ L G+ S++ + LEA + L++LDL +P GL+ Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 LARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELH 109 +R+ ++P+L L+ D L GAD YL K A+EEL Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD +L L+ + Q + Y D+ R + E+ Y L+++D+GLP DG+ Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R + YT P+L++TA+D +KI GLD GADDYL KP + ELHAR+RALLRR Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L +G L L+ +V L LTPKEY+LL + R + ++ Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVAN 219 +D+ P ++++ H+ LR ++ +A I V G GY L Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKLSPK 223 Score = 86.7 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 14/136 (10%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L V+DD +LL L + G++ ++ + Q+L L++LD+ +P DG+ Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 LARIRQKKYT------LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI---- 112 +R LP+L LTAR+ ++ DDY+VKP EL RI Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNRL 520 Query: 113 -RA-LLRRHNNQGESE 126 RA LL+R +++ Sbjct: 521 ERARLLKRLSSRDAQT 536 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 309 bits (794), Expect = 3e-83, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + + + D ++ Y ++VLD+ LP +G Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + IRQ+K PVL+LTA ++ DK+ G + GADDYLVKPF EL AR+RAL +R + Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 NQG--ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + G + L V +L L++ + G + + LT KE+ LL LM G V R + + Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVAN 219 ++ + TN ++V+++ LR K+ K I TV G GYML + Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLKED 230 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ + A Q E +A D A + +VLD+ LP DGL Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++RQ+K PVL+L+AR + +++ GL+ GADDYL KPFAL EL AR+R++ RR N Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L V +LTL+ RQ GG LT +EY LL LM G R + +++ Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVAN 219 +D +P TN ++V+I LR+KV + TVR GY++ Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMKEQ 223 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 120/236 (50%), Gaps = 16/236 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L ED+ + + + + +G+ + +A + Y +++LD+ +P +DGL Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ PV++LTARD L D++ GL++GADDY+ KPF +EEL ARI A++RR Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMG------------GEELILTPKEYALLSRLMLKAGSP 168 + + + VG L+ R V + + LT +E+ LL LM G Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 169 VHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 R + ++ +D PSTN ++V I LR K+ + I +VRG GY E Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRFRQAE 236 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDE--D 58 M+ILIVED+ L + + + EGYA D + Y +++D +P + D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 GL L ++R+ + P ++LTA + KI GLD GADDYL KPFA++EL AR+RA+LRR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + L VG L ++ R V +++ LT KEYALL LM +G + +E + + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVA 218 +N+D + NT+E +I LR K+ + I+TVRG GY L Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLEE 224 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 308 bits (791), Expect = 7e-83, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD + ++ + G+A D Y + ++D+ LP DGL Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R++K P++IL+A+ ++ D++ GL+ G DDYL KPF+ EL AR++AL+RR Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 121 NQGESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + E L VG L++N+ R+V G + L P+E+ALL M G + + ++ ++ Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 ++ +P TN ++V + LR+K+ + + T+RG GY+L Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLKE 223 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 79/215 (36%), Positives = 111/215 (51%), Gaps = 4/215 (1%) Query: 7 EDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFLARI 66 EDD L + + Y D T E Y L+++D LP DG+ ++ Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61 Query: 67 RQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQGESE 126 R + + P+++LTARD TD++AGLD GADDYLVKPF EEL ARIRALLRR Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIVSPV 121 Query: 127 LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWDNEPS 186 L G+L L+ +V G + LTPKEYALL + + L + ++ +++ P+ Sbjct: 122 LQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTPT 181 Query: 187 TNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLV 217 ++ HI LR K+ + I TV G GY L Sbjct: 182 VASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRLR 216 Score = 99.8 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+V+DD+ +L L Q G+ + + Q+LE L++LD+ +P G Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 LARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI-----RAL 115 +R + + LP+L ++A VGADDY+ KP EL AR+ R+ Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARSR 690 Query: 116 LRRHNNQGES 125 RR + +S Sbjct: 691 DRRLRTEIDS 700 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 3/224 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VED+ + L+ EGY + R+ L + + LV+LD LP EDG+ Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L R RQK T PVL LTARD +T+++ GLD GADDYL KPFA +EL AR+RALLRR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 L ++ ++ ++V GG L LT KE++LL + G + R +Y+ +++ Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 182 DNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYMLVANEEN 222 + +NTLEVH+ LR K+ G I+T+RG GY+L ++ Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACGPRVIQTLRGRGYVLETTSDD 227 >UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged helix family n=9 Tax=Proteobacteria RepID=Q3SMF6_THIDA Length = 220 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 97/215 (45%), Positives = 134/215 (62%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD LL GL G+A D + A +L ++ VVLDLGLP DGL Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + PVL+LTARD L DK+ GLD+GADDY++KPF L+E+ AR+RAL+RR + Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +G++ L+ R V G+ + LT +E+ LL L+ +G + R +L +Y Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYM 215 WD +N LEVH+H+LR K+G IRTVRG GYM Sbjct: 181 WDEGVGSNALEVHVHHLRRKLGNDVIRTVRGVGYM 215 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 98/214 (45%), Positives = 137/214 (64%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L L + ++EGYA + TA A +L G +++++LDLGLPD DGL Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + + K+++P LILTARD++TDKI GLD GADDYL KPF ++EL AR+R + RR Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S + +GN+ L++ QV E L+ +E+ LL LM AG + L +Y Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGY 214 W +E S+N +EVHIHNLR K+ K I+T+RG GY Sbjct: 181 WGDELSSNAIEVHIHNLRKKLPKDFIKTIRGVGY 214 >UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=B6J7N7_COXB1 Length = 232 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 135/223 (60%), Gaps = 2/223 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGH--YSLVVLDLGLPDED 58 M++L+VEDD L G+ + G+ D V + A L + H + +++LDLGLP Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 GL L IR+K PV+ILTARDT+ D+I GLD G+DDY+ KPF LEEL AR+RA+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + + G++TL+ V +E++++ +E+ALL +L+ AG + RE L + Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 Y W +N LEVHIHNLR + G IRT+RG GYM+ + Sbjct: 190 YGWGENIDSNALEVHIHNLRKRFGAKLIRTIRGVGYMVEKKSK 232 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++EDD Q L + + G+ D G Y ++++D LP DGL Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R + PVLIL+A + D++ GL G DDYL KP+A EL AR+ AL RR Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + ++ + VG+L L+ +V GE ++L P+EY LL LM AG V R +L ++ Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 180 NWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLV 217 ++ +P TN ++VH+ LR K+ K + TVRG GY + Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTIR 258 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIV+D+ LL L EG+A D+ + Y +VLD+ LP +G Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F +R+++ P+L+LTA+D D+ LD GADD L KPF+ L ARIRALLRR+ Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G+LTL+ +V G + LT +E++ L L+ G + ++ + +++ Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVAN 219 +D E +N +EV+I LR K+ G I T+RG GY L + Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEED 223 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+V+DD L Q L + + Y D T +E+ YSLV+LD+ LP +G+ Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R Y +PVL+LTARD+ DK+ GLD GADDYLVKP EEL AR+RALLRR Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + G+LTLN + ++ L LTPKEY L+ + + + +++ Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEE 221 + + NT+ HI +LR+K+ I V G GY + + ++ Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIKSLDD 226 Score = 89.0 bits (221), Expect = 9e-17, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%) Query: 8 DDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFLARIR 67 DD +L+ L G ++ T R Q LE + L+++D+ +P +G+ IR Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552 Query: 68 QKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + LP+L+LT + GADD++ KP EL AR+ + L R Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSR 607 Score = 45.1 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60 +LIV+ DT+L + +I A + G +A + S+++L+L P EDGL Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP 102 L I +PV+I + R + D++ +G+ +L KP Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKP 465 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 117/227 (51%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILIVEDD L L + YA + T A ++A Y L++LD+ LP DG+ Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR +P+L++T R++ +K GLD GADDYLVKPF +EEL ARIRALLRR Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L L+ + L LTPKE+ALL + + ++ +++ Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEEN 222 +++ P + HI LR K+ + TV G GY L EE+ Sbjct: 181 YEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLKPLEED 227 Score = 91.0 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+DD + L G ++ ++LEA +++LD+ LP +G+ Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 FLARIRQKKY--TLPVLILTARDTLTDKI-AGLDVGADDYLVKPFALEELHARI 112 +R + LP+L LT + + +GADD++ KP EL RI Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSD-AEMVNQVFSIGADDFVSKPIVGPELVTRI 509 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LI+ED+ L Q L + G+ D+ R + +G Y V+LD+ LP+ DG Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + ++R + + +PV++LTA+D++ D++ GL+ GADDYL KPF +EL AR+ AL+RR Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +Q S L G LTL+ R+ +G ++ L +E+ +L LM R+ + ++ Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANE 220 + + ++N ++VHI LRDK+ + TVRG GY + E Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYKVANPE 224 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 95/227 (41%), Positives = 130/227 (57%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++EDD + + + + Y + A LEA + L++LDLGLP DGL Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F IRQ+ ++LP+LILTARDT +DK+ GLD GADDY+VKPF L EL AR+RALLRR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L L+ R +V +EL LTPKEYA+L L+ + R + + + Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 D P T++VH+ +LR K+ I TV GFGY L N ++ Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLNPNFQS 227 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 124/232 (53%), Gaps = 17/232 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEA---------GHYSLVVLDL 52 +IL+VED+ ++ + L Q EG+ D R A + + LVVLDL Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 GLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 LP +GL F +R++ T+P+L+L+A+DT TD++ GL++GADDYL KPF EL AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 RALLRRHNNQG---ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 RALLRR NQ + L L L +V + EL L+PKE+ LL M Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYML 216 R+ L I+ D + T++VHI LR+K+ + + TVRGFGY L Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L+ + L YA + T + A + +EA Y L++ D+ LP DG+ Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + Y +P+L+LT +D+ D+ GLD GADDY+VKPF EEL AR+RALLRR Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L NL L+ +V L LTPKEYAL+ +M ++ I+ Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEE 221 +++ P + HI LR K+ I TV G GY L E Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKPLAE 226 Score = 94.0 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 10/147 (6%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +I+IV+DD +L+ + + G + ++L L++LD+ +P+ G+ Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 FLARIRQ--KKYTLPVLILTARDTLTDKI-AGLDVGADDYLVKPFALEELHARIRALLRR 118 +R + LP++ LTA T D + GADD++ KP EL RI L R Sbjct: 549 LCRVVRNDIQWEQLPIIFLTA-HTEADVVNQVYASGADDFISKPIVGPELVVRI--LNRL 605 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGG 145 + + L T++ R + Sbjct: 606 ERTRLQRRLS----TIDPLARVLSRHE 628 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDD + L A G++ D E G Y ++V+D LP DGL Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +A +R + PVLIL+A + D++ GL G DDYL KP+A EL AR+ L RR + Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 121 NQGESEL-IVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + + VG+L L+ ++ L P+E+ LL LM AG V R +L +++ Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 ++ +P TN ++VHI LR K+ K + TVRG GYML A Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLKAG 244 >UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=Proteobacteria RepID=C8KZR7_9PAST Length = 225 Score = 305 bits (783), Expect = 6e-82, Method: Composition-based stats. Identities = 96/222 (43%), Positives = 141/222 (63%), Gaps = 2/222 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD ++ + + YA D V + AE++L Y LV+LDLGLP +DGL Sbjct: 1 MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L+ IRQKK + PVLI+TARD L +++GLD GADDY++KPF + EL AR+RA+LRRH Sbjct: 61 QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGE--ELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 Q +L G +TL+ V + G+ + L+ KE+++L L+ +AG + R L + I Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANE 220 Y W E +N ++ IH LR K+GK +I+ VRG G+M+ + Sbjct: 181 YAWGEEVESNAIDFLIHGLRKKIGKEQIKNVRGVGWMMPKGD 222 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 305 bits (782), Expect = 8e-82, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ILIVED+ + + L L + EGY+ + G YSLV+LD+ LP GL Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L R+R+ PV++LTARD++ DK+ GLD+GA+DY+ KPF +EEL ARIRA LR++ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 QGESE---LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + E L +L +N R+V G +E+ LTP+E+ LL ++ + RE + + + Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVA 218 + +D TN ++V+I +R K+ K I T+RG GY + Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIKG 228 >UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammaproteobacteria RepID=A0KN62_AERHH Length = 229 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 98/221 (44%), Positives = 143/221 (64%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD +L G++ A ++ GY D + A L++ ++ ++LDL LPD DG+ Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R++ TLPVLILTARD L D++ GLD G+DDY+VKPFAL+EL+AR+RAL+RR Sbjct: 61 SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q ++ L G L L +QV GE + LTP EY LL L+ ++G + ++ L +Y Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 WD +N +EVHIH+LR K IR +RG GY++ E+ Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYSDLIRNIRGVGYIVPQLEQ 221 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+ ED+ LL+ L EG++ + A +G + ++LD+ LP DG Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R K +P+L+LTARD +D I GLD GADDY+ KPF+ EL AR+RA+ RR Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L+ +LTL+ +V+ G + LT E+ LL +LM AG PV R+ L +++ Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGY---MLVANEE 221 +D NTL+ I LR KV I+TVRGFGY L +++ Sbjct: 181 YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGYSARKLSGDDQ 228 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 114/223 (51%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+V+DD L L Y D V Y LVVLD LP G+ Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 H R+R++ +P+L+LT ++ +KI GL+ GADDY+VKPF ++EL ARIR LLRR Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ E LI GNL L+ QV G+ + LT KEY+LL + +L +++ Sbjct: 121 HETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVA 218 PS T+ H+ LR K+ I TV G GY L + Sbjct: 181 SQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLKS 223 Score = 79.0 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 10/128 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KI+IV+DD L+ ++ + +T + LVV D+ +P +G Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 FLARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP-----FALEELHARIR- 113 +R K LP++ L+ + +GADDY+ KP FA L R+ Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR-LLNRLNQ 628 Query: 114 -ALLRRHN 120 A +RR Sbjct: 629 TADIRRPA 636 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 123/227 (54%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++ED+ L L+ + +GYA D + Y L++LDL LP DGL Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R L +LILTARD +++ GLD GADDYL+KPF EL ARIRALLRR Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +L L+ + VW+ + L LT KE+A+LS LM G + +E+L +++ Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222 P TNT+ VHI+ LR K+ I TV G GY L E+ Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRLGNAGES 227 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 15/235 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++ED+ ++ + GY + Q ++ L++LD+ LP +G+ Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +RQ++ T P+L+LTA + + +AGLD GADDYLVKPF EL ARIR+LLRR+N Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 121 -----------NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 + L V +L L++ + G+ ++LT EY LL +M + Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 R + +++ D +T ++V+++ LR KV A I+TV G GYML E Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLKEEE 235 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 116/227 (51%), Gaps = 11/227 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+VEDD L + L EGY + A + SLV+LD+ LP DG Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 IR + ++P+L+LTAR + +DK+ GL+ GADDYL KPF + EL AR++ALLRR Sbjct: 91 LCRLIRTES-SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 122 QGESE-----LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 Q L +G+L + + R V G L +PKE+ L S ++ RE L Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVA 218 ++ +D T T++VHI LR K+ + TVRG GY Sbjct: 210 KVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +KIL+VEDD ++ + + + EGY A + L LV+LD+ LP+ DGL Sbjct: 2 VKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGL 61 Query: 61 HFLARIR--QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR- 117 +IR Q+ +P+++L+ARD + D++ GL++GADDY+ KPF+ EL ARI+A LR Sbjct: 62 DVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLRE 121 Query: 118 --RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 R++ L G+L + V + GE++ LT KE+ LL M + RE L Sbjct: 122 ERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLL 181 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVG--KARIRTVRGFGYMLVAN 219 ++ + T T++VHI NLR K+ I +VRG GY L N Sbjct: 182 QKVWGYTVSGDTRTVDVHISNLRSKLKSVSPIIESVRGVGYRLAVN 227 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 303 bits (778), Expect = 2e-81, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 IL++ED+ L + + EGY + ++ + LV+LD LP GL Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R+R +PV+++TARD ++D+ AGLD GADDY+VKPF+++EL +RIR LR+ Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 + +L+ +L L+ R+V G ++ LT KEY LL LM + R+ + ++ Sbjct: 130 SRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGC 189 Query: 182 DNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLV 217 D +N +EV+I LR K+ K I+TVRG GY+L Sbjct: 190 DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLR 229 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 303 bits (778), Expect = 2e-81, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+V+DD L+ L + Y D T AE+ + Y ++LD+GLPD +G+ Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+RQ+K T P+L+LTA D K+ L+ GADDY+VKPF EEL ARIRAL RR N Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N + L G+L ++ +V+ L +TPKEY +L + + + +++++ Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVA 218 +++ PS + + H+ LR K+ K I+TV G GY L A Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLKA 249 Score = 79.8 bits (197), Expect = 6e-14, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 2/128 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K++ ++DD +L L G+ ++ A +LE+ L+++D+ +P+ +GL Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572 Query: 62 FLARIR--QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 +R ++ LP+L L+ D + +VGADD++ K EL R+ L+R Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRT 632 Query: 120 NNQGESEL 127 + L Sbjct: 633 GRAVPALL 640 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 130/225 (57%), Gaps = 4/225 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIVED+ +++ L +GY+C S + +V+LD+ LP DG Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R ++ LPVL+LTARD + K+ LD GADDYL KPFA EEL ARIRAL+RR + Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G+L L++ R+VW G ++ L+ +E+ALL LM + R+ + + +++ Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE 221 + +P +N ++V++ LR K+ + I TVRG GY E Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFDPPRE 225 >UniRef50_Q2RPG3 Two component transcriptional regulator, winged helix family n=8 Tax=Alphaproteobacteria RepID=Q2RPG3_RHORT Length = 229 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 85/219 (38%), Positives = 124/219 (56%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L L + G+A D A E + VVLDLGLP DG+ Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R +PVLILTAR +K+AG + GADDY+ KPF +EE+ R++AL+RR Sbjct: 61 GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +EL+ G L L+ + + G L LT +EY +L+ L+L+ G V R + + +Y+ Sbjct: 121 GHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 D++ +N ++V + LR K+G I TVRG GY L A Sbjct: 181 RDSDRDSNVIDVLVGRLRRKLGAPLIHTVRGLGYRLEAE 219 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 129/225 (57%), Gaps = 4/225 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++++ED+ + + L + EG + R A Q +E LV+LDL LPD DG+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN- 120 R+R LP++ILTAR + +++ GL +GADDY+VKPF+ +EL AR+ A+ RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ + L V L+LN+ R+V + G + LTP E+ALL + M R+ L + ++ Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK---ARIRTVRGFGYMLVANEEN 222 + +N +EVHI NLR+K+G IRTV G GY L ++E Sbjct: 198 FTYVGDSNIVEVHISNLREKIGDHERKLIRTVYGVGYTLRPDDET 242 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 129/224 (57%), Gaps = 9/224 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M ILIV+DD+ LL L A + + Y ++ A + Y L++LD+ LP DGL Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ PVL+LTAR + D++ GLD GADDYL KPF++ EL ARIRALLRR + Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR-D 124 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + ++ L G L+LN R V + + LT KE+++L L+ GS V R + ++ Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184 Query: 181 WDNEPS--TNTLEVHIHNLRDKVG------KARIRTVRGFGYML 216 + +P +N ++VHI NLR K+ IRT+RG G+++ Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFII 228 >UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PY86_9GAMM Length = 222 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 90/222 (40%), Positives = 135/222 (60%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD + LI + + E YA D R A +L+ Y +++LDLGLP+ DG+ Sbjct: 1 MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R K PVL+LTARD + D++ GLD GADDY+ KPFA+ EL AR+R L+RR Sbjct: 61 SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L VG+LTL++ +++ G E+ +T KEY LL+ M + L N IYN Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 W+ +N +E I+ LR K+G+ RI+ +RG G+ + A ++ Sbjct: 181 WEAGIESNAIEFLIYGLRKKIGQKRIKNIRGLGWYISAESQD 222 >UniRef50_Q20YF2 Two component transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=Q20YF2_RHOPB Length = 221 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 90/217 (41%), Positives = 122/217 (56%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDDT L + + A + GY D ++G Y +LDLGLP DGL Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R K +PVLILTAR + +K+ GL GADDYL KPF +EEL ARI AL+RR + Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +E+ V L L+ +++ G L LT EY L+ LM+ V + L IY Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLV 217 D++ +N +EV ++ LR K+G IRT RG GY L Sbjct: 181 QDDDRDSNVIEVLVNRLRKKIGADAIRTRRGQGYQLA 217 >UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria RepID=B4RXL0_ALTMD Length = 221 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 97/221 (43%), Positives = 137/221 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L L L+ + YA D V T A +L G +VVLDLGLPD DGL Sbjct: 1 MRILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + L IR+K TLPVLILTARD ++DKI+GLD GADDYL KPF ++EL AR+R L RR Sbjct: 61 NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ + + N++L+ + + E + L +E +L L+ AG + + L N +Y Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 W E ++NT+EVH+ +LR K+ I+T+RG GY + + E Sbjct: 181 WGEEVASNTIEVHVSHLRKKMPDNFIKTIRGVGYCISKSGE 221 >UniRef50_A5WDA5 Two component transcriptional regulator, winged helix family n=14 Tax=Gammaproteobacteria RepID=A5WDA5_PSYWF Length = 224 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 86/217 (39%), Positives = 131/217 (60%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL++EDD+ + G++L ++ G D + A+ E +L+ G + V+LDL LP DG+ Sbjct: 3 RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDGMT 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L R K PVLI+TARD + +++AGL+ GADDYLVKPFAL+E+ AR++AL+RR Sbjct: 63 VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQG 122 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 + + E+ G + +QV G+ + LT KE A+L +++ R L + +Y W Sbjct: 123 RCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGW 182 Query: 182 DNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 + +N +EVHIH+LR K+G I T RG GY L Sbjct: 183 QQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYLNP 219 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD + L A G+ D + Y +++D+ LP DGL Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R + PVLIL+A+ +++D+++GL++G DDYL KPF L EL AR+ +L+RR Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 NQGESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 E+ L G+L L++ R+V+ G EE L P+E+ALL LM G V R + +++ Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVAN 219 ++ P+TN +EVHI LR+K+ + ++T R GY LV + Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYALVED 255 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+++DD + L A EGY + + L++LD+ LP DG Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R R+ + P+LIL+ARD + K+ GL++GADDYL KPFALEEL AR++ALLRR Sbjct: 64 ICQRFRKDNF-TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRR-I 121 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 + +L +++ R+V G L LT +E+ LL+ M + RE + + ++ Sbjct: 122 TANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL 181 Query: 182 DNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYMLVAN 219 D +N LEV+I+ LR K+ G I TVRG GY+L Sbjct: 182 DFTGGSNVLEVYINMLRQKIEDYGSRIIHTVRGVGYVLKEQ 222 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILIVED+ + + ++ G+ T A A G + L++LDLGLP +DGL Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH-- 119 L ++R + +LP++ILTARD + DKIA + GADDYL KPF EEL R++A LR + Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 120 --NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Q ES L N+ L++ R+V +G L L+ +E+ L G + RE L + Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLV 217 ++ +D +P +N ++V++ LR K+G I TVRG GY L Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGNELIETVRGMGYRLK 222 >UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria RepID=Q2T4E0_BURTA Length = 255 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 110/216 (50%), Positives = 146/216 (67%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L+ GL + EG+A D V A +L Y L++LDLGLPD+DGL Sbjct: 36 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 95 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA +R++ LPV+++TARD L D+IAGLD GADDYLVKPFALEEL ARIRA+ RR Sbjct: 96 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 155 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + ++ L VG L L+ R QVW GG+E+ L+PKE+ LL LM + G+ + RE +Y+ Sbjct: 156 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 215 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W E +N ++VHIHNLR K+G I TVRG GY + Sbjct: 216 WGEEIESNAVQVHIHNLRKKLGHDTILTVRGVGYRI 251 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 9/227 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++IL+V+DD + + L + GY + A + + + +VLD+ +P DGL Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGL 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R LP+L+LTARD++++++AGLD GADDYL KPFALEEL AR+RALLRR Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 121 NQGES-----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 + + + +L+L+ R+V G + LT E+ALL L+ + R + Sbjct: 123 LEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVA 218 +++ +D S N LEV++ LR K I TVRG GY+L Sbjct: 183 EEVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLRE 229 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 136/225 (60%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VED+ +L + + + GYA D+ + A + E Y L++LDL LP DG+ Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +IR + + +LIL+AR + DKI GLD GA+DYL+KPF +EL ARIR LLRR Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +Q + + N+TL+ ++ V + GE + +T KEYA+L LML + E L +++ Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR-----IRTVRGFGYMLVANE 220 + + +N+L+ HIH+LR K+ I+T+RG GY++ N+ Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITEND 225 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 122/235 (51%), Gaps = 16/235 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I++V+D+ + + L+ + G+ ++ + A + +E L+VLD+ LPD DG Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 RIRQ+ PVL LTARD DK+ GL VG DDY+ KPF+LEE+ ARIRA+LRR Q Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 123 GE--SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E + VG+L +N V G+ + L+P EY LL LM G + + + + ++ Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 181 WDNEPSTNTLEVHIHNLRDKVG--------------KARIRTVRGFGYMLVANEE 221 +D +E +I LR KV I T RG GYM+ A + Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRAPKN 248 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 9/227 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+ED+ L L EG T + + + ++LD+ LPD DG Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 AR+R++ T+P++++TARD + D+I GL GADDYL KPFA EEL AR+ A+ RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 119 ----HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 Q + + VG+L + + G + LT KE +L LM G+ + R + Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDK---VGKARIRTVRGFGYMLVA 218 ++ +++P TN +EV++ LR K +G + VRGFGY L+A Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALGPPVVENVRGFGYRLIA 227 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 125/222 (56%), Gaps = 1/222 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L L Q +GYA D + R A ++ Y L++LDLGLP GL Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA+ R PVLILTAR + ++I GL GADDYL KPF EEL RI+ALLRR Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + +L L L+ R+ V G ++ LT E+ LL ML + + L +Y Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 + + E +N LEVH+++LR K+G++ I T RG GY+ + E Sbjct: 181 DGETERDSNVLEVHVNHLRRKLGRSVIETRRGQGYIYAGSGE 222 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 299 bits (768), Expect = 3e-80, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++LIV+DD L + L + EG++ D + + +E +Y+ V+LD+ LP+ DG Sbjct: 5 QVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWE 64 Query: 62 FLARIRQK--KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 +IR +P+++LTA+ DKI GL +GADDY++KPF+ EL AR+RAL+RR Sbjct: 65 VCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRD 124 Query: 120 N--NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + L G+LT++ +V++ E+ L PKE+ LL L+ RE + Sbjct: 125 QDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEK 184 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEE 221 I+ + T T++ H+ +R K+ + I+TV G GY E Sbjct: 185 IWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVKNE 233 >UniRef50_B2HUW9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=12 Tax=Acinetobacter RepID=B2HUW9_ACIBC Length = 220 Score = 299 bits (768), Expect = 3e-80, Method: Composition-based stats. Identities = 86/216 (39%), Positives = 129/216 (59%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+ EDD + + + +GY D V A ++E Y ++LD GLP G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR K+ +PV+ +TARD++ D++ GLD+GA+DYLVKPF+LEEL ARIRA LR+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +S L G+L L+ + V G+ + LT KE+ +L +LM+ + R+ L +Y Sbjct: 121 LNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W E +N +EV I+ LR K+G + I+T+RG GY + Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSSIKTIRGLGYRM 216 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 12/227 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL++ED + + + + Y + + L++LD+ LP DGL Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 +R K P+L+LTA+ + +D++ GL+ GADDYL KPF++ EL AR++A LRR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 119 ----HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 Q + L G L ++ +R++ +G +E+ LT KE+ LL + G RE L Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYML 216 + ++ + + +T+ HI+ LR K+ + TV G GY Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 125/233 (53%), Gaps = 18/233 (7%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+V+D+ + + L + GY + R A Q LV+LD+ LP+ DGL Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGL 58 Query: 61 HFLARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 +++ T +P+++LTA+ D++ GL++GADDY+VKPF++ EL AR++A+LRR Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 119 H---------NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 N + E L +G L L+ Q W+ + + LTPKEY LL L+ G Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKAR-----IRTVRGFGYMLV 217 R+ L I+ ++ T T++VHI +LR K+ I TVRG GY Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_Q97LA9 Response regulator (CheY-like receiver domain and HTH DNA binding domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LA9_CLOAB Length = 221 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +LIVEDD L L + CD +LE Y V+LD+ LP DG+ Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R K + PVL+LTAR D++ GLD GADDYL KPF +EL AR+ AL+RR+ Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N+ +E+ + +L ++ + V +G + + LT +EY +L L + V E + ++ Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLV 217 ++ +N + VHI NLR K+ G+ I T++G GY L Sbjct: 181 DNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGYRLC 221 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 8/226 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VED+ + + + G+ D RM + + +Y LV+LDL LP +G Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 IR+K +P+++LTA + DK+ ++GADDYLVKPF EL ARIR L+R + Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 122 QGES----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + + ++++G+L ++ +++V GG+++ LT KEY LL L L G + + ++ Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVAN 219 +++ D + TN +EV+++ LR K+ K + T G GY L Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYLAEE 266 >UniRef50_B2JHN0 Two component transcriptional regulator, winged helix family n=4 Tax=Burkholderia RepID=B2JHN0_BURP8 Length = 228 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 95/216 (43%), Positives = 132/216 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L+ GL +A + G+ D + AE +L HY LV+LDLGLP G+ Sbjct: 10 MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + +PVL+LTA+DT DK+ GLD GADDYL KPF L EL +R RAL+RR Sbjct: 70 DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +G + L+++ + V G + LT +E+A+L L+ AG P R + +Y Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W E +N +EVH+ NLR K+G IRTVRGFGY++ Sbjct: 190 WHEEVESNAIEVHVSNLRKKLGGDVIRTVRGFGYVV 225 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 6/222 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ + L+ Q E Y + + + A ++ + LV+LD+ +P+ DGL Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 RIR+ +P+++LTAR D+I GL +GADDY+ KPF+ EL ARI A LRR + Sbjct: 67 ACMRIREFSN-VPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 122 ---QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + L +G L L+ R V + G+ + LT KE+ LL + RE L + I Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLVA 218 + D + T++ HI LR K+G+A I+TV G GY Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGSIQTVWGIGYKFEE 227 >UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q48H36_PSE14 Length = 222 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 91/215 (42%), Positives = 124/215 (57%), Gaps = 1/215 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED L L+ A +GYA D + R A Y L+VLDLGLP GL Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + R K PVLILTAR + +++I GL GADDYL KPF EEL RI+ALLRR + Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + L L L+ GR+ V G ++ LT E+ LL ML G + + L +Y Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGY 214 + +NE +N +EVH+++LR K+G+A + T RG GY Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRAVVETRRGQGY 215 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD L L Y D + Q + +Y L +LD+ +P DG+ Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + P+++LTA+D+ +D+I GLD GADDY++KP LE L ARIRALLRR N Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S + GNL LN+ +V E + LT KEYALL ++ +R ++ +++ Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANEE 221 P T+ HI LR K+ A I TV G GY L +E Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRLRKADE 225 Score = 69.0 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60 IL+++DD L + + + AQT + T +A Q + ++++LDL EDG Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP 102 L + Q + LP++I T R++L D+I +GA +L KP Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 495 Score = 64.8 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 26 ACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFLARIRQKK--YTLPVLILTARDT 83 + + L H +L+VLDL +P +GL +RQ LP+L L+ Sbjct: 543 EVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIYTD 602 Query: 84 LTDKIAGLDVGADDYLVK 101 GADDY+ K Sbjct: 603 EEMIQQMFAAGADDYISK 620 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L Q L Q Y+ D + + Y ++D+GLP DG+ Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R+++ + P+L+LTARD+ DK++GLD GADDYL KPF EEL AR++AL+RR Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + S + G ++N+ +V + L+ EY L LML G + +L IY+ Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVA 218 D + +N +EV I LR K+ I T+RG GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRLNP 222 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 131/235 (55%), Gaps = 17/235 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ ++ L + GY + T A A ++ ++LDL LP DG+ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 ++RQ+K P++I+TA++ DK+ GL++GADDY+ KPF+ E+ ARI+A++RR Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 122 ------------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 + ++VG+L ++ + +V G+ + LTPKE+ LL + + G + Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVAN 219 R+ + N ++ +D T +++HI +LR+K+ IRTVRGFGY V + Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGD 239 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L Q ++ + Y D + A +Y L++LD+ LP D + Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+RQ T P+++L+A T D +AGLD GADDY++KP +E L AR+RALLRR+ Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L GNL ++ +V G+ L L+PKEY LL LM ++ + ++ Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLV 217 + + P+ T++ H+ LR K+ K I TV GFGY L Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRLK 221 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 9/227 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ + + + GY V+ + L+ L+VLDL LP DG+ Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 +R++ +P+++LTA +TDKIAGLD GADDY+ KPF+ +EL +RI+A+ RR Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + +G LT+ +R+V + G + LTPKE+ LL L G + R+ L + Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVAN 219 ++++ T ++VHI +LRDK+ I TVR GY L A Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAP 230 >UniRef50_B0C620 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=B0C620_ACAM1 Length = 226 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 126/222 (56%), Gaps = 4/222 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILI ED+ ++ L + G+ A + + L++LDLGLP +DGL Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL--RRH 119 L IR + LP+++LTARD + D + L+ GA+DY+ KPF EEL ARI+ L RR Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 120 NNQGESE--LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Q SE L VGNL+L++ RQ W+G + L+ KE+ L L+ + +E L N Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 ++ +D +P +N +EV+I +LR K G I TVRG GY L ++ Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRKFGSQYIETVRGMGYRLNSS 224 >UniRef50_C7MME5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MME5_CRYCD Length = 226 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L + L + Y D V ++G Y VLD+ LP DG Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 A++R++ LP+L+LTAR + DK+ GLD GADDY+ KPFA EL ARIR+L RR Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L ++TL++ ++ G+ + L+ KE+ ++ LM + ++ L + ++ Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANEE 221 +D+ + N +E ++ LR K+ I T+RG GY L + Sbjct: 181 YDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGYRLGTQAD 225 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ L + + + G+ + Y +VLDL LP G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R P+LILTAR + GL++GADDYL KPF+ + L AR+ ALLRR Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L+VG+L L+ RR V G + LT +E+++L LM AGS + + + ++ Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVANE 220 D + N +EV++ LR K+ + IRTVRG GY++ + Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLMGDED 224 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 4 LIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFL 63 L+VED L + L + EG+A D T A+ + Y +VVLD+ LP DGL L Sbjct: 2 LLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSLL 61 Query: 64 ARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP-FALEELHARIRALLRRHNNQ 122 R R VL+LTA+ DK+ GLD GADDYL K LEEL ARIRAL+RR + Q Sbjct: 62 KRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQQ 121 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 + L +L ++ R V G + LTP+EYALL L G V R +++ +Y+ Sbjct: 122 KDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDEY 181 Query: 183 NEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVANEE 221 +E ++N ++V+I LR+KV K I T G GYML ++ Sbjct: 182 DENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYMLRGEDD 224 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 123/220 (55%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +K+++VEDD L + L + + GY+ S + A + + + LV+LD+ LPD DG Sbjct: 5 VKLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGY 64 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R+ K + +L+LTA DK+AG + GADDYL KPF EEL ARI+ALLRR N Sbjct: 65 EVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKN 124 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + G+L + +R V G+ + L+ E+ LL L V +E + + ++ Sbjct: 125 ISISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWG 184 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANE 220 D S NT+EV+++ +R K+ I+T+RG GY LV + Sbjct: 185 IDYYGSDNTVEVYVNYIRKKLSPELIKTIRGVGYKLVGEK 224 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 117/226 (51%), Gaps = 4/226 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L + L Y D + Y ++D+GLP DG+ Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +AR+R++ P+LILTARD DK+ GLD GADDYL KPF EEL AR++AL+RR Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + G +LN ++ G +++ L+ EY L ML G + IL IY+ Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANEEN 222 D + +N +EV I LR K+ I T+RG GY L + + Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRLKPLDNS 226 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ + Q + A + Y V T A L + VVLDLGLPD DGL Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R + PVL+L+ARD + D++ GL++GADDYL KPF+++E+ AR+R+LLRRH Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G + +++ R V G + LT +EYALL + + R ++ ++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 + TN ++V++ LR K+ I+T+RG GY L Sbjct: 225 ASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >UniRef50_C1SIE7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE7_9BACT Length = 240 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILIV+D+ L+ L + Y+ D+ + + YSL++LD+ LP DG Sbjct: 14 MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 73 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ T PVL+LTA+ ++D+I GLD G+DDYLVKPFA+ EL AR+RALLRR N Sbjct: 74 CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 133 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L V ++ LN V G L LT KEY + L+ V + L ++ Sbjct: 134 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 193 Query: 181 --WDNEPSTNTLEVHIHNLRDKVGKA---RIRTVRGFGYMLVANEEN 222 +D ++N ++VHI NLR K+G IRT RG GY++ EN Sbjct: 194 DEFDEFNASNFIDVHIKNLRKKIGDENHLIIRTKRGIGYIINDQNEN 240 >UniRef50_A9BQG9 Two component transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=A9BQG9_DELAS Length = 253 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 94/227 (41%), Positives = 133/227 (58%), Gaps = 11/227 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ + GL + YA D TT A +LE + V+LDLGLPD DG Sbjct: 22 MRILVVEDNAGIAAGLQANLEQRRYAVDVCTTVAEAWHALEMERFDAVLLDLGLPDGDGS 81 Query: 61 HFLARIRQK-----------KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELH 109 L R+R PVLILTARD + ++IAGLD+GADDYLVKPF ++EL Sbjct: 82 EILRRLRGPRRPGGDSQALPDPNTPVLILTARDQVRERIAGLDLGADDYLVKPFDIDELE 141 Query: 110 ARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 AR+RA+LRR Q + G L ++ R V G+ + ++P+E+++L L+ G + Sbjct: 142 ARLRAMLRRAGGQAAPVIRHGELEVDPAARTVRRDGKLVEMSPREFSVLWVLLQARGRVL 201 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 R+ + +Y+W +N +EVHIH+LR K+G A I T+RG GY L Sbjct: 202 SRQQIEEHLYSWGTAVESNAVEVHIHHLRKKLGNASIVTMRGVGYFL 248 >UniRef50_Q2S8G9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Proteobacteria RepID=Q2S8G9_HAHCH Length = 228 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ LL L GYA D+ +A + Y L V+DLGLP GL Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + R P+LILTAR DK++GL+ GADDYLVKPF + EL AR+ ALLRR + Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + G +TL+ + V + G L LT EY L L+ +AG V + L +Y Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLV 217 D + +N +EV I LR K+ I T+RG GY Sbjct: 181 QDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRFN 221 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +L+VED+ + + EGY V R G LV+LD+ LPD GL Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R+R + LP+L+LTA D + D++ GL GADDYL KPFA +EL ARI ALLRR + Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 122 QGES-ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E + G L L+ R GEE+ LTP E+ LL+ LM + G + R+ ++ +++ Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE 221 D + TN ++V+++ +R K+ +A I TVRG GY A E Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYRYTACSE 230 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 9/224 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL++EDD + + L + + EG+ + + G Y +++LD+ LP G+ Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 RIR+ +P+++LTA+D ++DK+ G D GADDY+ KPF+ EEL ARI+ALLRR Sbjct: 64 VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 Q--GESELIVGNLTLNMGRRQVWMG--GEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + +LT+N +V+ + L+ +E+ LL L+L G + R+ + + Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLV 217 ++ +D + N L+++I LRDK+ + I+TVRG G++ Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 81/219 (36%), Positives = 129/219 (58%), Gaps = 5/219 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VED+ L + L L + EG++ D + Y L++LD+ LP+ G+ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 RIR+ K +P++++TAR + D + GLD GA+DYL KPFA+EEL ARIR LLR+ ++ Sbjct: 73 CRRIRETK-DVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 E++VG L + R+V++ EE++LTP+E+ LL ++ V RE + ++ +D Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191 Query: 183 NEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLV 217 +TN ++V+I LR+K+ I TVRG GY L Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTLR 230 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+LIVED+ LL L + A + ++ ++ +VVLD+ LPD +G+ Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R K +P+L+LTA T + + GL+ GADDYLVKPF EL AR+ AL RR + Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 121 NQGE--SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + + +G+L +N + V GE +ILT KE+ LL L AG V R+ + +++ Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 ++ + + +TN ++V+I LR KV K I T++G GY++ Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVIKP 224 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIVEDD L Q L GY D V E G Y +++LD+ LP DG Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +A++R+K ++PVL+LTARD + DKI GLD GADDY+ KPFA EL A +RAL RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +L G+L LN+ + G + + L+ KE++L LM AG V +++L ++ Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVAN 219 ++ N +E ++ LR K+ ARI T+R GY VA+ Sbjct: 181 VESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRFVAD 223 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 4 LIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFL 63 L+VEDD+ + + + + + E +A D + + Y+L++LDL LP DG Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 ARIR--QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN- 120 R+R + P+++LTA++ +DK+ GL VGADDYL KPF E AR+ ALLRR Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 121 -NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 NQ + L LT+ Q ++ + + LTPKE+ LL L AG + RE L ++ Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEEN 222 ++ ST T++ HI LR K+ + ++TV G GY L E + Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVKEND 236 >UniRef50_Q6FA81 Putative two-component response regulator n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FA81_ACIAD Length = 218 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 85/218 (38%), Positives = 130/218 (59%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI EDD + + + +GY D V A +++ Y ++LD GLP G Sbjct: 1 MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ + PV+++TARD+++D++ GLD+GA+DYLVKPF+LEEL ARIR+ +R Sbjct: 61 QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q +S L N+ LN + V + GE + LT KE+ +L ++M V RE L + +Y Sbjct: 121 QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 W +E +N +EV I+ LR K+G I+T+RG GY + Sbjct: 181 WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE 218 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+VEDD + Q + ++ G+ T + +G + ++++D LP+ DGL Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 + +R ++ + PVL+L+A + D+++GL G DDYL KPFA+EEL ARI AL+RR NN Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 E+ L VG L++++ R V GE + L P+E+ LL LM + + R +L D++N+ Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 182 DNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 P TN ++VHI LR K+ + I+++RG G+ML E Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFMLRVPE 258 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +++L+V+D+ + + +A + EG+ ++V + + A + L+VLD+ L D DG Sbjct: 79 VRVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGF 138 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R + +P L LTARDT DK+ GL +G DDY+ KPF++ EL AR+RA+LRR Sbjct: 139 AVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAG 198 Query: 121 NQ-----GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 + + L +L L+ R+V G + LT EY LL L+ A + + R L Sbjct: 199 SPVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLL 258 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLV 217 + ++ D LE +I LR KV I TVRG GY+L Sbjct: 259 DHVWGHDFSGEGGVLETYISYLRRKVDNVEPPLIHTVRGVGYVLR 303 >UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acinetobacter RepID=C0VPI8_9GAMM Length = 219 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 83/216 (38%), Positives = 123/216 (56%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+ EDD + + + +GY+ D V A ++E Y V+LD GLP G Sbjct: 1 MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKASGD 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IRQ+ PV+ +TA+D + D++ GLD+GA+DYLVKPF LEEL AR+R+ LR+H Sbjct: 61 QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L +L L+ + + + + LT KE+ +L +LM K RE L +Y Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W +E +N +EV I+ +R K+G I+TVRG GY + Sbjct: 181 WGDEIESNAIEVFIYQIRKKIGGQYIKTVRGLGYRM 216 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 295 bits (757), Expect = 6e-79, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 118/228 (51%), Gaps = 9/228 (3%) Query: 1 MK--ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDED 58 MK +L+VED+ L L + EGY+ A E LV++D LP Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 59 GLHFLARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 G+ R+R ++ T +P+++LTAR TD++ GLD GADDY+VKPF++ EL ARIRA+L Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 117 RR-HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 RR E + G++T++ +V E+ L P E+ LL LM G RE L Sbjct: 121 RRIRPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLL 180 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRD----KVGKARIRTVRGFGYMLVAN 219 + ++ D T++VH+ LR K + IRTVR GY N Sbjct: 181 DAVWGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDVN 228 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDDT + + LI Q EG T + Y ++VLD+ LP +DG Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA++R + + PVLIL+A+ ++ +++ GL GADDYLVKPFA EL AR ++L RR Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 121 NQGES--ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 +L L+L++ + + G + L +E+ L+ ++ + + + + + Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 + +P TN ++V + LR KV K I T+RG GY+L + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVLKSQ 225 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 13/232 (5%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +++LI +D+ + L + E Y D+ A + Y+LV+LDL +P DG+ Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 R+R +P+L+LTA+D DKI GL +GADDY+ KPF++ E+ ARI+AL+RR Sbjct: 64 EVCRRLR-NNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 119 -----HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 N Q ++ L LT+++ + V +G +E+ LT KE LL + Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANE 220 L+ ++++ + NT+ VHI LR K+ I+TV G GY V + Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEK 234 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 295 bits (756), Expect = 8e-79, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 11/230 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+V+DD +L+ L + EGY+ + A +V+LD+ LP DG Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 IR+ +P+++LTARD D+I GL++GADDY++KPF+ +E+ AR+RA+ RR Sbjct: 61 GVCKEIRRTS-DVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ 119 Query: 119 ---HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 + GE L VG+ L+ R + + G + LTP EY LL + G R L Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANE 220 + ++ E T++ HI NLR K+G + I+T+ G GY LV + Sbjct: 180 EKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGEQ 229 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 5/220 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ + L G+ D E Y +++LD+ LP DG Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + IR K PVL LTA D + D++ G ++GADDYLVKPFA EL ARIR LR+ Sbjct: 61 TVIKSIRSKS-ETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ L + +L +++ R+V+ G + LT +E++LL LM + G + R + + ++ Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWG 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYML 216 + + TN ++V I LR KV I TVRG GY+L Sbjct: 180 VNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVL 219 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VED+ + + + E Y +V + A + H+ LV+LDL LP G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 IR +P+++LTA+ + D+I GL++GADDYLVKPF+ EL AR+RALLRR + Sbjct: 70 VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 122 QGES---ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 E L G LT+++ +V +GG+E+ LT E+ LL+ L G R L + Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 +D E T++ H+ NLR K+G + TV G GY + Sbjct: 189 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTKQ 237 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 131/227 (57%), Gaps = 10/227 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++I IVED+ + + L + + EG+ + A + + G++ LV+LD+ LP DG+ Sbjct: 5 VRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGM 64 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 R+R+ +LP+++LTA+D + DK+AGLD+GADDY+ KPFA+EEL ARIR LR+H Sbjct: 65 TICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHV 123 Query: 120 ----NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 E L V NL + R +V + GE + LT KEY+LL +M + + R+ + Sbjct: 124 PDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQIL 183 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVA 218 ++ +D TN ++V+I LR K+ I TVRG GY + Sbjct: 184 EKVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGYAVKE 230 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 15/234 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEA-----GHYS---LVVLDL 52 M IL+VEDDT + L + EGY ++ +++LDL Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 GLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 LP G+ +R PVL+LTA + D++ GL GADDYLVKPF+ EEL ARI Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 113 RALLRRHNNQGES---ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 ALLRR +Q L GN+ L+ +V GEE++LT +E ALL + G + Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVAN 219 RE + ++++ D +P TN ++V++ LR K+ I TVRG GY L + Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLEPD 234 >UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter RepID=Q6F8E2_ACIAD Length = 226 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 135/221 (61%), Gaps = 7/221 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILI+EDD ++ + I + + + V L + LV+LDLGLP DG+ Sbjct: 3 KILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPMMDGMQ 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L +IRQK +PVLI++ARD L +++ GL+ GADDYL+KP+ +EL ARI ALLRR N+ Sbjct: 63 VLKQIRQK-TGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNS 121 Query: 122 ------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 Q + L G + LN+ + G+E+ L+ +E+A+L LM + L Sbjct: 122 KDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKANLE 181 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 + +Y++D+E ++NT+EV+IH+LR K+GK IRT+RG GY L Sbjct: 182 DKLYDFDSEVTSNTIEVYIHHLRSKLGKNFIRTIRGLGYRL 222 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 127/220 (57%), Gaps = 12/220 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILIVED+ L + L L E Y D+ + + +Y L++LDL LP +GL Sbjct: 3 QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +IRQ+ + P++I+TA+ DK+AGLD GADDY+VKPF +EEL ARIRA+LRR Sbjct: 63 ICRKIRQQ-QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--- 118 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 Q + ++ + +N +V + G E+ LT EY LL L + RE + N ++ + Sbjct: 119 QPQKDI----IDVNGTLLKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 174 Query: 182 DNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLV 217 ++E TN ++V+I LR+K+ I TVRG GY++ Sbjct: 175 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVIR 214 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L++ED+ + + + L EGYA + + LV+LDL LP DGL Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 RIR+ P++ILTA+D + DK+ GLD GADDYL+KPF++EEL AR+RA LRR N Sbjct: 67 ARRIRKTSN-TPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 E+ V +L +N+ R+++ GG + L+ KE+ LL L G R + ++ + Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-PE 184 Query: 183 NEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 +N ++V+I LR K+ + I TVRG GY+L Sbjct: 185 YTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVLREE 225 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 294 bits (754), Expect = 1e-78, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD + + L E Y D T + Q + + +Y L++LD+ LP+ DG+ Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F ++R ++YTLPVL +TA D ++KIAGL+ GADDY+ KPF LEEL AR+RALLRR Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 121 NQGE-SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + L L L + R++ +L LTPKE+A+L + RE + ++++ Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANE 220 ++ + P T+ H+ LR K+ I TV G GY L E Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLKPIE 226 Score = 70.2 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL V+DD+ LLQ L E Y ++ ++L+ + L++LD+ +P G+ Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 FLARIRQKK--YTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 +R+ LP++ TA + A G D+ + K + +L A + ++R Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 Query: 120 NNQG 123 Q Sbjct: 660 YLQQ 663 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+ ED+ + + + G++ + L+ + LV+LD+ +P +GL Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 FLARIRQK-KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 RQ Y PV++LTA T D + GLD GADDYLVKPF+ +EL ARI+ALLRR+ Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++L NL L+ R+ G ++ LT KEY LL M G + R L D+++ Sbjct: 144 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 203 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVA 218 + + +TN ++V+++ LR K+ K I TV G GY++ A Sbjct: 204 KNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMNA 245 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 120/234 (51%), Gaps = 16/234 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I++V+D+ + + L+ + G+ ++ + A + +E + +L+V+D+ LPD DG Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 RIRQ +PVL LTARD DKI GL VG DDY+ KPF+LEE+ ARIRA+LRR Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 GESE--LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E + V +L +N V G + L+P EY LL LM G + + + N ++ Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK--------------ARIRTVRGFGYMLVANE 220 +D +E +I LR K+ I T RG GYM+ + Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIREPK 242 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 10/226 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+L++ED+ L + L EGY + Q+ ++ L++LD+ LP +G Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L R+RQ P++ILTAR+ + + GL GADDY+ KPF + EL AR+ A+LRR Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 122 -------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 E + VG+L++ + +V + GE + L PKE+ +L L+ + G + R+ L Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLV 217 N ++ +D T++VH+ +LR K+ +I ++RG GY LV Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLELGQSVQIESIRGVGYKLV 229 >UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellular organisms RepID=A1V147_BURMS Length = 283 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 99/217 (45%), Positives = 138/217 (63%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VEDD ++ +G+ A + +G A D V A +L Y L++LDLGLP DG+ Sbjct: 66 ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGIDV 125 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 L +R + LPVLILTARD + D++ GLD GADDYLVKPF L+EL AR+RAL+RR + + Sbjct: 126 LRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGR 185 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 ES + G LTL+ QV + G + L+ +E+ALL L+ + G+ + + L +Y W Sbjct: 186 SESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYGWG 245 Query: 183 NEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 E +NT+EV+IH LR K+G IR VRG GYM+V Sbjct: 246 EEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKE 282 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD + L + EGY + + + G + L++LD+ LP +GL Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R KK +P+++LTA D D I GL +GADDY+ KPFA +EL ARI A+ RR Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 NQ--GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 N+ + L G L + V + EE+ LT KE A+L LM G + RE + +++ Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANE 220 + + +P TN ++V+I LR K+ G++ I T RG GY L E Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLNLVE 227 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 124/227 (54%), Gaps = 10/227 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 IL+V+D+ L++GL L+ + EG+ + + R A AG + L+VLDL LP DGL Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 +R P+++LTA+ DKI GL++GADDY+ KPF EL ARIRA+LRR Sbjct: 63 ICREVRAAGM-TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 L+VG+L L+ +R+ + G L LT +EY LL L G R+ L + Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVAN 219 ++ +D T++VH+ +R+K+ + +RT G GY L A Sbjct: 182 VWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDD+ + + L+ Q EG T + +++LD+ LP +DG Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA +R + + PV+IL+A+ ++ +++ GL GADDYLVKPFA EL AR + L+RR Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 121 NQGES--ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 EL G L L++ + + + + + +E+ L+ L+ + + + + + Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVA 218 + +P TN ++V + LR KV K I T+RG GY+L + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVLKS 224 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 1/215 (0%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILIV+D+ + L + EGY + + LV+LD+ LP +DG Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L I +K PV++LTARD D++ G ++GADDY+ KPF + L AR+++LLR+ NN Sbjct: 68 ILREI-KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 ES + +G+L +N V E+ L PKEY LL L+ + RE L N+++ + Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWGY 186 Query: 182 DNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 D T++ HI NLR K+GK I+T+RG GY L Sbjct: 187 DFLGDDRTIDTHIKNLRKKIGKNAIKTIRGIGYKL 221 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 293 bits (752), Expect = 2e-78, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 7/220 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIVED+ L + + L + E Y D + + + Y L++LDL LP+ +GL Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +IRQ T P++I+TA+ DK+AGLD GADDY+VKPF +EEL ARIRA+LRR Sbjct: 63 ICRQIRQ-NQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRRQPQ 121 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 + ++ + +V + G+ L LT EY LL L+ + RE + D++ + Sbjct: 122 KNLIDIKGIIID--KDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGY 179 Query: 182 DNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLV 217 D E TN ++V+I LR+K+ I TVRG GY++ Sbjct: 180 DTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYVVR 219 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 10/228 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++ED+ + + EG+ + V Q ++ L++LD+ LP DG+ Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR+ T+P+++LTA+DT +D++ G ++GADDY+ KPF+ L ARI+A++RR+ Sbjct: 61 TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 121 NQGESEL-----IVGNLTLNMGRRQVWMGGEELI-LTPKEYALLSRLMLKAGSPVHREIL 174 G++ + T+N R+V + GE + LTPKE+ LL L+ RE L Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYMLVAN 219 ++ + T++VHI LR K+ K + TV G GY + Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLASEDKPFLYTVWGVGYKFDED 227 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L++EDD + + + G+ ++ R A + ++VLD LP DGL Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR PVLIL+A + ++I GL G DDYL KPFAL EL AR+ AL RR Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 121 NQGE-SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 E +EL G+L +++ R V G + LT +E+ +L L+ AG V R +L ++ Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 +++ +P TN ++ H+ LR K+ + I TVRG GY++ + Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYVVRPS 224 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 8/223 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+V+D+ + L +A + GY + T R A Q++ L++LD+ LPD G Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +R + +PVL LT + D++ GLD+G DD++ KPF L+E+ AR+RALLRR Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 122 QGE----SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + L G + L+ QVW + LT E+ALL LM G + R + Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKA---RIRTVRGFGYMLV 217 ++N +E + ++ +I+ LR K+G+ IRTVRG GY L Sbjct: 208 VWNHRDEG-SGVVDTYIYYLRRKLGEPGQSLIRTVRGVGYQLC 249 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 8/230 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++ED+ ++ + + G+ + Q + + +++LDL +P +G+ Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 R R + T P+L+LTA T + ++GLD GADDY+ KPF L EL AR+R L+RR Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 120 ---NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 + + L +G+L L+ + V GG+ + LT E+ LL L+ ++R + Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANEEN 222 ++++ + TN ++V+I+ LR K+ K I TV G GY++ + E+ Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGYVIRQSYED 230 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 120/218 (55%), Gaps = 6/218 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 ILIVED+ + + + Q G+ C+SV A Q ++ Y L++LD+ LP DG Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 + ++ P + L+A++++ D+I G +GADDYL KPF + EL AR+ A+LRR Sbjct: 64 I----EQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 S GN+ ++ QV+ G+ + TPKEY LL L+ + RE L ++ +D Sbjct: 120 A-SCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYD 178 Query: 183 NEPSTNTLEVHIHNLRDKVG-KARIRTVRGFGYMLVAN 219 E T T++VHI LR K+ + RI+TV GY L + Sbjct: 179 FEGDTRTVDVHIQKLRKKLEWEDRIKTVYKLGYRLEVS 216 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L +EDD + ++ ++ G+ D V R + Y ++ LD LP DGL Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L +R PVL+L+A + +++ GL G DDYL KPF EE+ AR+ LLRR Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 QG---ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 E+ L VG LTL++ R+V+ G E+ L P EY +L +M AG + R +L+ + Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216 + + +P TN ++VH+ LR K+ IRTVRG GY+L Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYIL 271 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 124/244 (50%), Gaps = 25/244 (10%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VED+ + + + EGY + VT A Y L++LDL LP DGL Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 FLARIR-QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR-RH 119 +IR +PV++LTA+ +KI GL++GADDY+ KPF+ EL AR++A LR R Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 120 NN------------------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRL 161 + E G L++ + + ++ +EL LTPKE+ LL+ + Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 162 MLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYML 216 + +G + RE L I+ +D T T++VHI +LR K+ + TVRG GY L Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242 Query: 217 VANE 220 E Sbjct: 243 KEME 246 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL+VEDD + LI GY + A + L + ++++D+ LP DG+ Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 IR K P+L+L+A ++ DKI LD+GADDYL KPF EEL +RI+AL RR+ Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 121 ---NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + + L GN+T++ +V +E+ +P EY L + LM + R + ++ Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKAR---IRTVRGFGYMLV 217 ++ D + +TN ++V+I +R+K+ + I TV+G GY++ Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDETEQKIIHTVKGTGYLIK 223 >UniRef50_C1ZD82 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD82_PLALI Length = 235 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 2/220 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ LIVED LL L + EGYA D+ Y ++VLD LP G Sbjct: 1 MRALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R KK + PVL+LTARD + D++ GLD GADDYLVKPF EL AR+RAL+RR Sbjct: 61 DLLKQLRTKK-STPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAA 119 Query: 121 NQGESELIVG-NLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + ES L +G +T+N+ R+V+ E++LT +EY++ L L G V R LY+ I+ Sbjct: 120 GESESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEYLALHRGRVVPRTDLYDHIF 179 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 + ++E +N L+VHI NLR K+G+ I T RG GY++ + Sbjct: 180 DENDESLSNLLDVHISNLRRKLGRDVIETRRGLGYIIHSQ 219 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++EDD + + + G+A DS R G YS ++D+ LP+ DGL Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-H 119 + +R PVLIL+A+ ++ D+I GL G DDY++KPF+ EL R++AL+RR Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + ++ L +G L +++ R+QV G ++ L KEYALL + AG+ + + + +Y Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVAN 219 ++ +P TN ++V + LR K+ K I+T+RG GY+L ++ Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVLRSH 224 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 119/232 (51%), Gaps = 12/232 (5%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAG-HYSLVVLDLGLPDED- 58 MK+LI+EDD L + + GYA A ++ E Y LVVLDL LP D Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 59 ------GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 G+ RIR+ +P+L+LTA D + K+ GLD GADDYLVKPF L EL AR+ Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 113 RALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHRE 172 RALLRR L V + L+ R G + LT KE+A+L LM AG V Sbjct: 121 RALLRRSPQAQAPVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSST 180 Query: 173 ILYNDIYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANE 220 L + ++ + E +N ++ +I LR K+ I T RG GY++ +E Sbjct: 181 ELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIEQSE 232 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 292 bits (749), Expect = 5e-78, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILI++DD + + EGY + + L++LD+ +PD DGL Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--H 119 R+R K +P+L++T D++ D++ GL+ GADDYLVKPFA EEL AR++ALLRR H Sbjct: 64 VCKRLR-KDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + + +LI +L +++ RQ + G + + E+ LL M + RE+L + ++ Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 180 NWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVA 218 +D +N LEV++ LR K+ I TVRG GY+L Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVLRE 225 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 292 bits (749), Expect = 5e-78, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD + + + + EG+ + + +++++ L++LD LP DGL Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 +IR + +L+L+A + ++I GL GADDYL KPF EEL ARI AL RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 ++L +L L + +V+ + + LT KE ++L + K G RE + +++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 +P TN ++V++ LR K+ + I+T RG GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+V+DD + L Q EGY ++ + +A +SL++LD LP + G+ Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVAAAH-NCYAFSLLILDWMLPGKSGV 59 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F +R++ P+L+LTARD + D+I GLD GADDYL KPF EEL A +RALLRR Sbjct: 60 EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVE 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + +L ++ R V G L LTPKEYA+L L+ AG V R L I++ Sbjct: 120 LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWH 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVAN 219 D N ++VH+ NLR K+ I+TVRG G+ + + Sbjct: 180 ADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRISPS 222 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 127/234 (54%), Gaps = 13/234 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L++ED+ L + L EGY ++ ++ + L++LDL LP +G Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 ++++R + PV+ILTA++ + + GL GADDY+ KPF + EL AR+ A+LRR Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 122 ---------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHRE 172 Q S++++G LT+ + +V + GE + L PKE+ +L L K G + R+ Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 173 ILYNDIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEEN 222 L N ++ +D T++VH+ +LR K+ I ++RG GY LV N++ Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVVNKKQ 237 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 9/225 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+V+D+ ++ + +A + G+ + T + A A L++LD+ LPD DG Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R+R + V+ LTARD DKI GL G DDY+ KPFA+EEL AR+RA+LRR Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 122 QGES------ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 L ++ L+ V + + L+P E++LL + + R + Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYMLV 217 +++ D + ++ ++ LR K+ G I T RGFGY L Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQHGPPLIHTQRGFGYALR 246 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 13/234 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+V+D+ +L+ L EG+ + VT R A E Y +VLD+ LP DG+ Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH-- 119 R+R K P+++++A+ DK+ L++GADDY+ KPF+ EL AR++A+LRR Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 120 ------NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 E + L L R +V+ E L LTPKEY LL LM + RE Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 L I+ +D T ++VHI LR+K+ I+T+RG+GY + + Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKND 244 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+VEDD ++ L L EGY + A + + LV+LD+ LP++DG Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 IR+ +P+++LTA+D DK+ GL +GADDY+ KPF +EL ARI A+LRR+ + Sbjct: 63 VCKEIRKISN-VPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 122 --QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 +++ +++ +R V + G+E+ L+ +E+ +L L+ G R+++ I+ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 + ++V+I LR+KV I TVR GY E+ Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNED 229 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +K+L+V+D+ + + ++ + +G+ ++ + A + E +LD+ +P DG Sbjct: 30 VKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGF 89 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R+ + P L LTA+D + D+I GL +GADDY+ KPF+LEE+ R+R +LRR Sbjct: 90 TLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVA 149 Query: 121 N---QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + S + ++TL+ +V GE + L+P E+ LL LM+ A + + + + Sbjct: 150 KDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDH 209 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLVAN 219 ++N+D N +E ++ LR K+ I TVRG GY+L Sbjct: 210 VWNYDFGGDGNVVESYVSYLRRKIDTKEPRLIHTVRGVGYVLRKP 254 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 123/232 (53%), Gaps = 18/232 (7%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSL----------EAGHYSLVVLDL 52 IL++ED+ L+ + ++LA Q EGY + A + E G L++LD+ Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 53 GLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 LP +GL IR++ T+P+L+++A+ + D++ GL++GADDYL KPF + E+ AR Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143 Query: 113 RALLRRHNNQG---ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 RALLRR Q L +L L + + GEEL L+PKEY LL M Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYML 216 RE L + ++ D + T++VHI LR+K+ I TVRGFGY Sbjct: 204 PREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_C6VUR1 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C6VUR1_DYAFD Length = 226 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VEDD + L GY + MA ++ G + L +LD+ LPD DG Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 IR KK PVLIL+A DKI LD+GADDYL KP EL +RI AL RR+ Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 120 -NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + ++ L+ +L +N+ V G+E++L+ KE+ L LM + R + + Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 ++ + + TN ++V+I LR+K+ IRTV+G GYM+ + + Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMIASQK 226 >UniRef50_Q2BR69 Two component Transcriptional regulator, Winged helix family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BR69_9GAMM Length = 219 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 86/219 (39%), Positives = 131/219 (59%), Gaps = 2/219 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L+VEDD LL Q + + Q Y D + + ++ H +++LDL LPD DGL Sbjct: 3 MHVLLVEDDPLLGQVIEIKLQERQYQVDWIQSGSAVLSTVRNLHPDIIILDLNLPDIDGL 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R + + PVLILTAR + +++ GLD+GADDYL KPF ++EL AR+RA+ RR + Sbjct: 63 EILKRLRAENISTPVLILTARHAVEERVNGLDLGADDYLTKPFEMDELEARLRAVQRRLH 122 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + E+ G++ ++ RQV+ G + + +E+ LL L+ G + R + +Y Sbjct: 123 GRSKEEITFGDIKIDSAARQVFFKGSPIEASRREFDLLVLLLNNTGRVMTRAKIEATLYA 182 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 ++ +N LEVHIHNLR K+GK I TVRG GY + Sbjct: 183 --DDVESNALEVHIHNLRKKLGKELISTVRGVGYYVAER 219 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ + L + + GY + A ++ A L+++D+ LPD G Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN- 120 R+R+ + PV+ L+ARD+ DKI GL VG DDY+ KPF+L+E+ AR+ A+LRR Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + ++ + VG+L ++ +V++ G + L+P E+ LL ML + + + +++ Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVAN 219 +D + ++ +E +I +R K+ + I T RGFGY++ Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIMRTR 251 >UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellular organisms RepID=Q2T0V1_BURTA Length = 291 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 93/219 (42%), Positives = 131/219 (59%), Gaps = 2/219 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI EDD++L GL + + GYA D V A+ +L + L++LDLGLP GL Sbjct: 45 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 104 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R + LPVLILTA D++ +++ GLD+GADDY+ KPFAL EL AR+RAL RR Sbjct: 105 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 G + + G+L+ + R + L L+ +E LL L+ + G V +E L + + Sbjct: 165 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 224 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLV 217 W E S N +EV++H LR K+ + RI TVRG GY L Sbjct: 225 WGEEVSNNAIEVYVHRLRKKIEPSGVRITTVRGLGYCLE 263 >UniRef50_Q3M194 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostocaceae RepID=Q3M194_ANAVT Length = 725 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+LIVE+D L + + + D+ + +R A + EA Y L+VLD+ LPDE+G+ Sbjct: 1 MKLLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + P+L+LT + D+IAG + GADDY+ KP+ L EL ARIRALLRR + Sbjct: 61 RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L L+ +V G+ L LTPKEY LL + R L + I + Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRICS 180 Query: 181 WDNEPSTNTLEVHIHNLRDK-----VGKARIRTVRGFGYMLVANEE 221 D P + I LR K + I T+ G GY L + E Sbjct: 181 IDECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRLKSVPE 226 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++LIV+DD LL L Q G+ ++ + Q LEA L++LD+ +P G+ Sbjct: 607 RLLIVDDDPALLSILEAQLQPWGFQVTTLADSSQFWQYLEATTPDLLLLDVAMPGFSGIE 666 Query: 62 FLARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 ++ + LPVL+L+A L GADDY++KP +L RI Sbjct: 667 LCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 719 Score = 75.2 bits (185), Expect = 1e-12, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 2/131 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60 +L+++DDT L++ + A ++VT +A Q L+ ++LDL P+ E GL Sbjct: 483 VLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLTFPNTTESGL 542 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA+++ + T+PVL+LT LT ++ +GA+ +L KP E+ + LL R + Sbjct: 543 TLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLHRID 602 Query: 121 NQGESELIVGN 131 LIV + Sbjct: 603 TINARLLIVDD 613 >UniRef50_Q480M1 Response regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480M1_COLP3 Length = 243 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 90/243 (37%), Positives = 134/243 (55%), Gaps = 22/243 (9%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L + L + EG+ D ++ ++A +L + +V+LDLGLPD DGL Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSHDMVILDLGLPDIDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR KK LPV+ILTARD++ K+ GLD GADDYL KPF ++EL AR+R + RR Sbjct: 61 LVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIERRLG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWM----------------------GGEELILTPKEYALL 158 S + + ++L+ +V++ G E+ + KE+ +L Sbjct: 121 TASSSMITIDRVSLDTKSHKVYLLQCNQVNNEQNHEQEGEINAQNGASEVHFSKKEFMVL 180 Query: 159 SRLMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 LM AG RE + + +Y W E +N +EVHIH LR + I+ VRG GY++ Sbjct: 181 KALMENAGRIQSREQIESKLYQWGEEVLSNAVEVHIHKLRKNLPNKFIQNVRGVGYIINH 240 Query: 219 NEE 221 ++ Sbjct: 241 PQD 243 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 121/226 (53%), Gaps = 11/226 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+V+D+ ++++GL + + D A + + Y +++LD+ LP DGL Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN- 120 +IR+ +P+++LTA+ DKI GLD GADDY+ KPF + E+ AR++A+LRR++ Sbjct: 73 VCQQIREFSN-VPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 121 ----NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 Q + + G++ ++ R +++ +E+ LT KE+ LL L + G R+ L Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLV 217 ++ D T++VH+ LR+K+ + T G GY Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFN 237 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 15/234 (6%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ + + L + + E YA D A +Y L++LDL +P DG+ Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +IR+KK P+++LTA+ +++ G + G DDY+VKPF+ E+ R++ALLRR + Sbjct: 68 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 QG--------ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 ++ L+ +L+++ +V G E+ LTPKEY LL L RE Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKVGK------ARIRTVRGFGYMLVANEE 221 L +++ ++ T++ H+ LR+K+ K +I TV G GY E Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >UniRef50_C6RM27 Transcriptional regulatory protein QseB n=1 Tax=Acinetobacter radioresistens SK82 RepID=C6RM27_ACIRA Length = 221 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 125/220 (56%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +++VEDD + + A + + V+TA A+ + L +LDLGLPD+DGL Sbjct: 1 MFVVLVEDDPYIAHSICAALDFLNISVEHVSTASAADYFIRHSAVDLCLLDLGLPDQDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + RQ + P+L+LTAR I L++GADDYL KPF L+EL AR+ AL RRH Sbjct: 61 ELLRKWRQDQIHTPILVLTARIQTRQCIEALNLGADDYLTKPFELDELVARLHALTRRHR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +L+LN ++V+ + + L+ +EY+LL LM + E L + +Y Sbjct: 121 GFSSNVLQFEDLSLNQDTQEVFYQHQAIQLSRREYSLLETLMSHPNQILKNEQLLDKLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANE 220 + + +N L VHI++LR K+ I+T+RG GYM +E Sbjct: 181 YQDSIESNALNVHIYHLRQKLNADFIQTIRGVGYMFKVSE 220 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+V+DD +L + A + E + + +AR ++LE L+VLD+ LPD GL Sbjct: 1 MKILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 + ++++K +PV+ LTAR + D I GL++GADDY+ KPF L ARI+A+ RR+ Sbjct: 61 DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120 Query: 120 -NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + + +G++ ++M + G++ L KE+ LL ++ G +R+ + + + Sbjct: 121 MGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 + D T++VHI LR+K+G I+TVRG GY LV E+ Sbjct: 181 WGMDFFGDFRTVDVHISKLREKIGSEFIKTVRGVGYKLVIPED 223 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 4/221 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+ ED T + L GY D A E Y + D+ +P DG+ Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + ++R+ P ++LTAR+ + D++ GLD GADDYL KPF+L EL AR+RA+LRR Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + V +L L++ W G E+ LT +E++LL LML + PV + + +++ Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 + TN ++V+I LR+K+ I+T RG GY + Sbjct: 181 QSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAIR 221 >UniRef50_UPI0001C16C1D manR (Two component Transcriptional regulator, Winged helix family) n=2 Tax=Nostocaceae RepID=UPI0001C16C1D Length = 268 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 112/223 (50%), Gaps = 7/223 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+V+D+ L L EGY D + + + Y L++LD LP++ GL Sbjct: 33 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R++ +PVL LTA+DTL D++ GLD G DDYLVKPF L EL AR+RALLRR + Sbjct: 93 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152 Query: 121 NQG---ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 +L VG+L L+M + G + L+ KE LL M + + Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 ++ + P +N + I LR K+ I TV G GY Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKIELGGESMLIHTVYGKGYRF 255 >UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=Burkholderiales RepID=Q2KYE7_BORA1 Length = 231 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 93/222 (41%), Positives = 134/222 (60%), Gaps = 2/222 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI EDD++L GL + + GYA D+V A+ +L A + L++LDLGLP GL Sbjct: 1 MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGLPQVTGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R + LPVLILTA D++ ++ GLD+GADDY+ KPFAL EL AR+RAL RR Sbjct: 61 EVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 G + + G L + R + L L+ +E +LL L+ ++G V + L + + Sbjct: 121 GGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDHLCE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLVANE 220 W E STN +EV++H LR K+ + +I TVRG GY L ++ Sbjct: 181 WGEEVSTNAIEVYVHRLRKKLEPSGVKIITVRGLGYCLERDQ 222 >UniRef50_C1ABP4 OmpR family two-component response regulator n=2 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABP4_GEMAT Length = 231 Score = 289 bits (742), Expect = 3e-77, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+ EDD L + + + DSV A Y V+LD+ +P DG+ Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R ++ +P+L+LTARD + ++I GLD GADDYL KPF EL AR+RALLRR + Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S + VG+L ++ +Q G L LT +E+ LL+ L AG V R L +++ Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE 221 +++P+ N ++V++ LR KV + + T RG G +L + + Sbjct: 181 ENHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQGVLLSDDGD 225 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 1 MK--ILIVEDDTLLLQGLILAAQTEG-YACDSVTTARMAEQSLEAGHYSLVVLDLGLPDE 57 MK I+I+EDDT + Q + + EG + TT +++ +L++LD+ LP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 DGLHFLARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRAL 115 +G R+R+++ T +P+++LTAR TDKI GL +GADDY+ KPF++ EL ARI A+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 LRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 LRR S G L ++ V G+E+ LT KE+ALL L G + RE L Sbjct: 121 LRRTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLL 180 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVG-KARIRTVRGFGYMLVA 218 + ++ D + T TL+VHI +R K+G I T G GY V Sbjct: 181 DRVWGIDYDGETRTLDVHIRRVRQKLGIDGYIETAVGIGYRFVE 224 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 122/222 (54%), Gaps = 6/222 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++ED+ + + GY D+V+ R Y+L++LD+ LP DG Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R K PV+ LTARD++ D++ GLD GA+DYLVKPF+ EL AR+RA LR+H+ Sbjct: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L + L ++ V + LT KE+ LL L +AG + R ++ ++I+ Sbjct: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 + + TNT++V I LR KV I T+RG GY VA Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 133/222 (59%), Gaps = 4/222 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K LIVEDD LLL+ L + EG+ D A Q + Y +++LD+ +P DG+ Sbjct: 4 KALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVK 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 ++R + +P+++LTA+ L DK+ GL+ GADDY+ KPF+ +EL R++ +LRR+N Sbjct: 64 VCKQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNK 122 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 E ++++ +LT+++ +V+ G+ + LTPKE+ LL L + RE+L N ++ Sbjct: 123 VQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGI 182 Query: 182 DNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLVANE 220 ++ +N ++V+I N+R+K+ I T+RG GYML + Sbjct: 183 ASDYDSNIVDVYIKNIRNKLEDKPPKLILTIRGRGYMLSTEQ 224 >UniRef50_Q20WN2 Two component transcriptional regulator, winged helix family n=4 Tax=Rhizobiales RepID=Q20WN2_RHOPB Length = 221 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 88/219 (40%), Positives = 129/219 (58%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD + L Q GY ++V A + Y+ +VLDLGLP DGL Sbjct: 1 MRVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDYAAIVLDLGLPGMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R PVLILTAR + +++ G+D GADDYL KPF +EEL AR+R+++RR Sbjct: 61 AVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q S + VG++TL+ + +V +GG + L+P EY L++ L L G V + L +IY Sbjct: 121 GQACSVISVGDVTLDERQMKVDVGGVPVNLSPLEYRLIAFLFLHRGRVVSQAELSENIYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 ++ +N +EV I +R K+G I T RGFGY++ + Sbjct: 181 NEDAHDSNAIEVLIGRVRKKLGSELIETRRGFGYLVAGS 219 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILIVED+ + L EGY D R + G Y L++LD+ LP DG Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 ++ +R+ + PVL LTA+D + DK+ GL++GADDYL+KPF EL AR+R LLRR + Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 Q + + ++T++M RR V G+++ LT KEY LL L+ + G + R ++ + ++N Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 182 DNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVANEE 221 + + TN ++V + LR K+ I TVRG GY+L EE Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLEIREE 226 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+ED+ + L+ + GY + V + L+ Y L++LD+ LPD +G Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ +PV+ LTA+D + D++ GL++GADDYL KPF+ EL ARI++LLRR Sbjct: 61 SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E+EL + +L +++ +VW G + L+ E+ LL L++ V R + ++++N Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 + + TN ++V + LR K+ I T+RG GY + Sbjct: 180 INFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKI 219 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 288 bits (740), Expect = 6e-77, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 118/227 (51%), Gaps = 8/227 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+ EDD L+ L Q EGYA +S A Y L++LD+ LP G Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 ++R+ + +P+L+LTAR + DK+ GL GADDYL KPF + EL ARI ALLRR Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 122 QGE---SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + +G + ++ R +V G+ + L+ +EY LL L+ G V RE L + Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANE 220 + + T T++VH+ LR K+ ++TVRG GY L E Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDEE 230 >UniRef50_C6Q063 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q063_9CLOT Length = 367 Score = 288 bits (740), Expect = 6e-77, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 + IL+V+D+ +++ + + + EG+ + A + + S+++LD+ LP +G Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + I++ +++LTA+D + D++ GLD+GADDY++KPF+ +EL ARI A LR Sbjct: 208 EVCSEIKKWVNAS-IIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSL 266 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + +GN LN +++ L L+P EY LL L+ G + + + ++ Sbjct: 267 PELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG 326 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK---ARIRTVRGFGYMLV 217 +D N +EV+I LRDK+G + IRTVRG GY +V Sbjct: 327 FDFNGDVNIVEVYIRYLRDKIGDNEHSIIRTVRGVGYKVV 366 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 288 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 124/235 (52%), Gaps = 13/235 (5%) Query: 1 MK-ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDG 59 MK IL+V+D+ +L L + E + + T A + ++LDL LP DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 + +IR+ K P++ILTA+D TDKI GL+VGADDY+ KPF+ E+ ARIRA+ RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 NN-------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHRE 172 Q ++VG+L+++ G +L LTPKE+ LL M + RE Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 173 ILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 L N ++ +D T +++ + +LR+K+ ++TVRGFGY L + Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPAHD 235 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 288 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VEDD + L L G+A D V Y L+VLD+ LP DG Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 R+RQ+K P+L++TA+ DK+ GL++GADDY+ KPF++ E+ AR++AL RR Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 119 ----HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 ++ + +G + + +R+V + GE + LT KE+ LL G R+ L Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEE 221 ++++ + ++T+ HI+ LR+K+ ++TV G GY EE Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAEREE 239 >UniRef50_Q3MAE8 Response regulator receiver modulated diguanylate cyclase n=3 Tax=Cyanobacteria RepID=Q3MAE8_ANAVT Length = 684 Score = 288 bits (740), Expect = 8e-77, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L+ + L+ + ++ Y D E Y L++LDL LP DG+ Sbjct: 1 MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGEEGWNFAELYTYDLILLDLILPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F ++R PVL+LT++DT K+AGLD GADDY+ KPF +EL ARIRALLRR Sbjct: 61 SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L NL L+ +V G+ L LTPKEY LL + + L + +++ Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVA 218 ++ P+ +T+ HI LR K+ + I TV G GY L Sbjct: 181 FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLKP 223 Score = 84.8 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +++IV+DD +L L G ++ ++ +++ L++L + +P G+ Sbjct: 396 RVMIVDDDPQILTALQTLLSAWGIKVYTLAHSQGFLEAMALAEPELLILKMEMPSTSGIE 455 Query: 62 FLARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 RQ+ LP+L LT R + GADDY+ KP EL RI Sbjct: 456 LCQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPIVEPELIGRI 508 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILI+EDD L+ + A D+ + + Y L+VLD LP DGL Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + PVLIL+A + + +++ GL G DDY+ KPFA EL R+ L +R+ Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 +EL+VG L + + R V + EL+L PKE+ LL LM + R +L+ ++ Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 ++ +P TN ++VHI LR K I TVRG GY L Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRL 221 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 17/238 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+L+V+D+ ++ L + + + T A +E HY +V+LDL LP+ G Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 L RIR + PV++LTA+DT DK+ GL++GADDY+ KPF+ E+ ARI A+LRR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 119 ---HNNQGESELIVGNL------TLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 N Q + + G++ T++ + +V + + L LTPKE+ L+ L+ + Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 R+ L ++ +D + +++ I +LR+K+ ++T+RGFGY ++ Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGDD 240 >UniRef50_C2KX66 Two component response regulator n=2 Tax=Lachnospiraceae RepID=C2KX66_9FIRM Length = 228 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ +L + + + + Y D+ A + + Y L++LD+ +P +G Sbjct: 1 MRILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVMMPKLNGY 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R++K LP+L+LTA+ L D+I GL+ GAD YL KPF EL A I ALLRR Sbjct: 61 QVARQLRKEKNGLPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRRQG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + S L G+L+L++ + + G L L+ KE+ L+ L+ + +E + ++ Sbjct: 121 QEVNS-LSFGDLSLDLDSKDLSSGAHSLKLSKKEFELMRMLLQGKNQILSKEQILQKVWG 179 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANEE 221 +D++ N +EV++ LR K+ + I++ RG GY L EE Sbjct: 180 YDSDAVENHVEVYVGFLRKKLRLLESRVSIQSRRGLGYFLAEQEE 224 >UniRef50_B7S3C0 Response regulator receiver domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S3C0_9GAMM Length = 222 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 95/215 (44%), Positives = 130/215 (60%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VEDD L + L A + E YA D + + ++ A Y L++LDLGLP+ G+ Sbjct: 6 RILLVEDDVQLGESLEAALRLEHYAVDWLRSGEPVRATIGATPYDLMILDLGLPEVPGIQ 65 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L + R K+ +PVL+LTAR+TL DK+ GLD GADDYL KPF ++EL AR+R LLRR Sbjct: 66 VLRQTRADKHDIPVLLLTARNTLDDKVDGLDSGADDYLTKPFEIDELFARVRTLLRRRGE 125 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 +L +T++ R V GE L LT +EYA+L L+ AG V R L IY+W Sbjct: 126 GRSQQLEARGITIDPVDRLVIFEGEMLDLTAREYAILEILIRNAGRFVSRPRLEEGIYSW 185 Query: 182 DNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 E +NT+EV+I LR + G I T+RG GY + Sbjct: 186 GEEVGSNTVEVYISRLRKRFGSDCIETMRGVGYRI 220 >UniRef50_A9HHL1 Probable two-component response regulator transcription regulator protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HHL1_9RHOB Length = 223 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL++ED+ + + EG++ D + +Y +V+LDL LP G Sbjct: 1 MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R +K P+++LTA D +K+ GL +GADDYL KPF +EL ARI AL RR Sbjct: 61 GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120 Query: 121 N----QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 ++ + G +T + +V + + + LT KE LL L+ G + RE + N Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLV 217 ++ + +P TN ++V++ LR K+G+ RI T+R GY + Sbjct: 181 TVWGLNADPLTNVVDVYVGRLRRKLGQEGQRIVTLRNVGYRMA 223 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 8/223 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L++ED+ + + + L E +A + + +++LD+ LP DG+ Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +IR K P+++LTARD++TD++ GLD GADDY+ KPFA+EEL ARIR + RR Sbjct: 89 VCQKIRSVK-KTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147 Query: 122 Q---GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 Q + L L + + R V + + LT +EY LL M + R++L + + Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 + ++ TN ++V++ LR+K+ + I TVRG GY++ Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVMR 250 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 12/230 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILIV+D+ ++ + + EG+A + A L Y L++LD+GLP DG Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L ++R + + PV++LTAR D++ GL++GADDY+VKPF+ EL AR+RALLRR Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 122 QGESELIVGN-------LTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 +G+ L L+ RR+ +L L PKE+ LL+ L G RE+L Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVAN 219 ++ +D T++VHI LR K+ + I+T G GY + Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIEG 232 >UniRef50_C1TR79 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TR79_9BACT Length = 222 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 90/216 (41%), Positives = 134/216 (62%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++ILIVEDD ++ + + GY D V A +L+ ++S+++LDLGLPD GL Sbjct: 3 IRILIVEDDGMIGEEIQEGLSRRGYTVDWVRDMESAATALDLENFSMMILDLGLPDGSGL 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R LPV+ILTA DT+ ++I GLD GADDY+VKPF LEEL ARIRAL RR Sbjct: 63 ELLQKMRDGGNRLPVIILTAWDTVPNRINGLDNGADDYMVKPFELEELSARIRALARRVR 122 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + +L ++ ++V G E+ L+ EY LL+ + G + RE L +Y Sbjct: 123 GDSSPTIRIADLEIDPATKRVSKDGREVRLSHSEYVLLTTFVENVGIVLSRERLEASLYG 182 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W+ + +N ++VHIHNLR+K+G ++ VRGFGY++ Sbjct: 183 WEKDVESNAIQVHIHNLREKLGTDIVKNVRGFGYLM 218 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ LL+ ++ + E + D+ Y ++LD+ +P DG Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +IR +K PVL LTARD+L D++ GLD G DDY+VKPF EL ARIRALLRR Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + + + + L + V + G+ + L+ K+Y LL L+ +G + RE +++ ++ Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 +D++ + +EV++H+LR K+ I+TVRG GY+L Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYILKEQ 232 >UniRef50_A1RNU1 Two component transcriptional regulator, winged helix family n=23 Tax=Gammaproteobacteria RepID=A1RNU1_SHESW Length = 224 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 123/219 (56%), Gaps = 3/219 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VED+ +L+ L + GY D A A+ ++ Y V+LD+GLPD +GL Sbjct: 1 MKLLLVEDNPMLVNELAKQLKLAGYVTDITDKALEADYLIKETQYDCVILDIGLPDGNGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R + + PV++LTAR +K+ G + GADDYL KPF +EL ARI+AL+ R + Sbjct: 61 ELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAH 120 Query: 121 NQ---GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + +L G +TL+ + V + LT E+ LL ++ + + L + Sbjct: 121 GRLNTPSKQLTYGGVTLDETEQTVKVADHLYELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 +Y +D+E +N +EV++ +LR K+GK I T RG GY+ Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKLGKTAIETRRGQGYIF 219 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 10/230 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++++++ED+ + + + EG+ + +++ +VVLD+ LP DGL Sbjct: 15 VRVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGL 74 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 RI Q +PVL+LTARD TD + GL VGADDY+ KPF++ EL AR++ALLRR Sbjct: 75 EVCRRI-QADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVR 133 Query: 121 NQGESE---------LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHR 171 L +G+L ++ R+V G LTP E+ LL L G+ + R Sbjct: 134 RAAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTR 193 Query: 172 EILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 E L D+++W + T T++ H+ LR K+G +RTV G GY L E+ Sbjct: 194 EQLLADVWDWVDATGTRTVDSHVKALRRKLGSDLVRTVHGVGYALEIPED 243 >UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=6 Tax=Lactococcus lactis RepID=Q030C5_LACLS Length = 234 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 1 MK--ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEA-GHY-SLVVLDLGLPD 56 MK ILI+ED+ + L EGY S + E Y +V+LD +P Sbjct: 13 MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72 Query: 57 EDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 DGL L R+++ +PV+ +TARD + DK+AGLD GADDYL KPF +EEL AR+R + Sbjct: 73 LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132 Query: 117 RRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 R N + G ++LN G V + LT +E+ALL L G + R+ + Sbjct: 133 R--KNTQPAIYSYGTVSLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILE 190 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANE 220 +++ + NT++ ++ LR K+ K I T+RG GY L ++ Sbjct: 191 EVWGMNFGGQLNTVDTYVRYLRKKLDKNMIETIRGLGYRLNKDK 234 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 6/227 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLP-DEDGL 60 + LI+EDD L + + + +G + + +++LD LP DGL Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R PVL+L+A +++ GL G DDYL KPFA EL AR+ AL+RR Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 121 NQGES-ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + E+ + +L LN+ R G+ L L P+E+ LL+ LM A V R +L ++ Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANEEN 222 ++ +P TN ++VHI LR KV K A I TVRG GY L ++ Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSLSDRPQD 257 >UniRef50_B8IU63 Two component transcriptional regulator, winged helix family n=20 Tax=Proteobacteria RepID=B8IU63_METNO Length = 225 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 131/224 (58%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED + + ++ +T G+A D M + LE Y LV+LD+ LP DG Sbjct: 1 MRILLVEDTQDVGEAIVARLRTLGHAVDWERDGAMGDAVLEVQPYDLVILDVNLPGLDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R ++ PVL+LTAR + D++ LD+GADDYLVKPF EL AR+RALLRRH+ Sbjct: 61 AILKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ + GNL+L+ R +GG+ L LT +E+ L+ L + G + L + + Sbjct: 121 GHADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRLST 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANE 220 ++ EPS N LE + LR K+ + IRT+RG GY +V E Sbjct: 181 FEEEPSENALEQIVARLRRKLAQAGAEPEIRTLRGLGYQVVCPE 224 >UniRef50_Q1H1R2 Two component transcriptional regulator, winged helix family n=2 Tax=Betaproteobacteria RepID=Q1H1R2_METFK Length = 223 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 93/218 (42%), Positives = 137/218 (62%), Gaps = 2/218 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD +L +G + GYA D T A +EAGHY +++LD+GLP DG Sbjct: 1 MRILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGLPGMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R+ ++PVLI++ARD + +I GLD+GADD+++KPF L ELHAR RALLRRH Sbjct: 61 EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRRHT 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G L +++G ++ + GE + L+ +E+ +L L+ G V +E + + + Sbjct: 121 LSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLCD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 W + S N +EV+I LR K+ IRTVRGFGY+L Sbjct: 181 WKTDISLNAVEVYISRLRSKLDAHGIHIRTVRGFGYLL 218 >UniRef50_A5FBX2 Two component transcriptional regulator, winged helix family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FBX2_FLAJ1 Length = 223 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L++EDD + + +I + + T MA ++ + ++++D+ LP DG+ Sbjct: 1 MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R KK P+LIL+A DK+ LD GADDYLVKPF +EL +R+ AL RR Sbjct: 61 QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120 Query: 121 ---NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 N+ E+ G LT+N +V + + L+P+EY LL L+ + R + Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG--KARIRTVRGFGYMLVA 218 ++ + + +TN ++V+I LR+K+ I T++G GYML Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIEHNHKFIHTIKGIGYMLKE 223 >UniRef50_A2SKN3 Two component transcriptional regulator, winged helix family n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SKN3_METPP Length = 266 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 135/220 (61%), Gaps = 2/220 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL+ EDD L + A +++G+ D S++ Y L++LD+GL DG Sbjct: 38 MHILLAEDDPALAESTARALRSQGWVVDHTPRGEPVPTSVKTDPYDLLILDIGLIGIDGF 97 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R++ TLPVL+LTARD + D++ GL++GADDYLVKPFAL EL AR++ L RRH Sbjct: 98 ETLRRVREQGSTLPVLMLTARDAIEDRVHGLEMGADDYLVKPFALAELIARVKVLTRRHQ 157 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + S L +G L +++ + W+G + L L+ +E+A+L L+ + G V +E + I Sbjct: 158 ARQGSVLSMGGLRMDLEANRAWIGEQPLDLSAREWAVLEYLLSRVGHVVGKEQILQAISG 217 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLVA 218 WD+ S N +EV++ LR K+ A RIR VRGFGY++ Sbjct: 218 WDDALSENAVEVYVSRLRPKIEPAGLRIRAVRGFGYLVEE 257 >UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Francisella RepID=B0TXH6_FRAP2 Length = 228 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 94/219 (42%), Positives = 135/219 (61%), Gaps = 5/219 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+ EDD L +GL+ A Q EG + V+ A+ +E+G Y +VVLD+G+P + GL Sbjct: 1 MRLLLAEDDLNLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR--- 117 L +R K +P+++LTARD L D+I GLD+GADDYL KPF L+EL ARI+A+ R Sbjct: 61 EVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 118 -RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 R + E+ G+ + N V G + ++ KE ALL+ L+ AG V + L Sbjct: 121 TRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVG-KARIRTVRGFGY 214 ++Y+ D E TNTLEVH+HNLR K+ I+T+RG GY Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIPNFIQTIRGVGY 219 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M ILI+ED+ L + L + + EGY D + + + Y +++LDL LP G Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R++K V+IL+A+ L DKIAGLD GADDYL KPF ++EL ARIRA+ RRH Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 121 NQGESELIVGNLTLNMGRRQVWMG--GEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 EL+ +L LN+ + L L KE+ L+ LM + R + I Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199 Query: 179 YNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVA 218 + +D+E N ++V+I LR K+ IR VRG GY L Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTLQE 243 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VEDD L Q L ++EGY R A + L++LDL LP GL Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 R+R + P+++LTAR TDK+ GL +GADDYL KPF ++EL ARI A+LRR + Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 123 GESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 S+ + VG+L ++ R V ++L L+ +E+ +L L AG V RE +Y +++ + Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 182 DNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANE 220 D + T++ HI LR K+ I TV G GY V E Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVVPE 228 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 12/228 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+LI+EDD + + + G CD + + +Y +++LD+ LP DGL Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R+R+ +P+L+LT+R DK+ L+ GADDY+ KPF++ EL AR+ A +RR+ Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 122 QGESELI-------VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 + E I L L+ +V + +E+ +T KE+ LLS M G R L Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLV 217 + ++ +T+ HI+ LR K+ I TV G GY Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFN 232 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +LIV+D+ + + + + ++ A Q L+ ++++D+ +P DG Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--HN 120 ARIR++ +P+L LTAR DK+ GL +G DDY+VKPF+ EL ARI A++RR HN Sbjct: 66 CARIREQS-DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q +L G L ++ R+V + G+ ++LT KE+ LL L G RE L ++ Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLVAN 219 +D + T++ HI LR K+ +A I+TV G GY + Sbjct: 185 YDYTGNARTVDTHIKTLRMKLKQASDFIQTVWGIGYKFEVS 225 >UniRef50_A6TPN8 Two component transcriptional regulator, winged helix family n=7 Tax=Bacteria RepID=A6TPN8_ALKMQ Length = 225 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 124/224 (55%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+ED+ L + L + Y D + + Y L++LD+ LP DGL Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IRQ+ PV++LTA+ +TDK+ GLD GADDYL KPFA EEL ARIRA+ RR Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKG 120 Query: 121 NQ-GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + L G++ LN ++ +E+ LT KE LL+ L+L+ +E++ I+ Sbjct: 121 EVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVAN 219 +D++ N +EV+I LR K+ K I T+RG GY+L Sbjct: 181 GFDSDVEHNHVEVYISFLRKKLLFLTSKVVINTLRGVGYILEVK 224 >UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococcoides RepID=Q3Z753_DEHE1 Length = 222 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+++DD L Q L A G+ + E + L++LD+GLPD++G+ Sbjct: 1 MRILLLDDDKCLCQTLERALGEAGHVVEYACDGASGEYFAANSEFDLLILDIGLPDKNGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R VL+LTARD+L K+ GLD GADDYL KPFA +EL ARIRAL RR Sbjct: 61 EVCRKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQRRPP 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + ++ + +V G E+ LT EY +L + G + R +L ++ Sbjct: 121 LRVLPVVETAGISFDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEEHLWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 ++ +NT++ I LR K+G I+T+RG GY L Sbjct: 181 AESTSVSNTIDSLIKKLRQKLGWDAKSGPIKTLRGAGYRL 220 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 86/218 (39%), Positives = 129/218 (59%), Gaps = 5/218 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I VEDD + + +I A EGY + +L + L++LD+ LP + GL Sbjct: 18 ICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEI 77 Query: 63 LARIR--QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR +K +PV++LTA+ T DKI GLD GADDY++KPF++ EL AR+RALLRR + Sbjct: 78 LKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSS 137 Query: 121 -NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 ++ +S++I N+ L+ +R V + GE + LT KE+ LL L+ G + RE + I+ Sbjct: 138 LSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKIW 197 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKAR--IRTVRGFGYM 215 +D E + T++VHI LR K+ A I+T+R GY Sbjct: 198 GFDFEGESRTVDVHIATLRQKLKNASSIIKTIRNLGYK 235 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 8/225 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I ++EDD + + L + EG+ S ++A + ++ +VVLDL +P+ DGL F Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 63 LARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R K +P+++LTA+ T DKI GL++GADDY+ KPF+ EL AR++ALLRR Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 121 ----NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 + E G+L ++ + +V + G+ + LT ++ LL L+ G + R+ + Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGK--ARIRTVRGFGYMLVAN 219 ++ WD + T++VHI LR+ + + I+T+RG GY Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYGNCIKTIRGVGYKWECE 228 >UniRef50_A7IE82 Two component transcriptional regulator, winged helix family n=5 Tax=Alphaproteobacteria RepID=A7IE82_XANP2 Length = 220 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 95/219 (43%), Positives = 128/219 (58%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD +L+ GL + G D TT A +L AG + VVLD+ LPD GL Sbjct: 1 MRILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA +R + PVL+LTA D D++ GLD GADDYL KPF L+EL+AR+RA+ RR + Sbjct: 61 DVLAGLRARGNATPVLLLTALDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARRGH 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G L L+ + G + L+ +E+A+LS LM + G R + +Y Sbjct: 121 GRAGPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSALMERPGVIRSRMEIEERLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 W E +N +EVHIHNLR KVG+ I TVRG GY + Sbjct: 181 WQEEVESNAVEVHIHNLRAKVGRETIETVRGLGYRVRGP 219 >UniRef50_B1HMR9 Response regulator n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HMR9_LYSSC Length = 225 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+ EDD L + ++ + E + V A + + L++LD +P GL Sbjct: 1 MKILLAEDDARLRKNIVYILRKEFHHVIEVDNGLDALDHTFSESFDLLILDWMMPQLSGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R ++ +L+LTA+D +D I GLD GADDYLVKPF +EEL ARIRA+LRR Sbjct: 61 EVCKQLRDTGFSGGILMLTAKDDTSDIIQGLDSGADDYLVKPFKMEELLARIRAVLRRKE 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E + V NL LN+ R E+ LT E+ALL L + G + RE + I+ Sbjct: 121 KVIEQVIQVENLQLNIDSRVFLRDNTEIELTKNEFALLEFLFINKGHVLTREQICIYIWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 +D + S N+L+ + +R K+ K+ I+ VRG GY L Sbjct: 181 YDFDVSNNSLDALVKLVRKKIDTSHEKSHIQNVRGIGYKLR 221 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 9/227 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 ILI+EDD + L + GY M + ++ + LV+ D+ LP DG Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 IR+ +PVL+LTA + DK+ G D GADDY+VKPF EL+ARI+ LL+R Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 123 -----GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 +L +L ++ RR+V G + L+PKEY LL+ ++ A + R + Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVANE 220 ++N + TN ++V+I+ LR K+ K I T G G++L + Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFILTDEK 230 >UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax=Actinobacteria (class) RepID=A4AIS8_9ACTN Length = 242 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 4/221 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+VEDD + + + +GYA VT A + ++S +D+ LP+ G Sbjct: 20 KILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGFE 79 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +R++ +LPVL+LTARD + D++ GLD GADDYL KPFA E ARIRAL+RR Sbjct: 80 ICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDTA 139 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 G++ L +G L L+ + G L ++ KE+ALL L G + R + ++++ Sbjct: 140 AGKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVWGT 199 Query: 182 DNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 N ++ ++ LR K+ + I TVRG GY L A Sbjct: 200 TAHIDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYALSA 240 >UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobacteria RepID=Q2JX56_SYNJA Length = 246 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 120/230 (52%), Gaps = 9/230 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLE---AGHYSLVVLDLGLPDED 58 +IL+V+D+ L L + EG++ D A + L+ A Y L+VLD LP Sbjct: 3 RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 GL ++RQ P+L LTA+DTL D++ GLD GADDYLVKPF L EL AR+RALLRR Sbjct: 63 GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122 Query: 119 HNNQGE--SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 GE L +G+L L+ + + G + L+ KE+ LL M G + E +Y Sbjct: 123 AAGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYE 182 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANEEN 222 ++ ++ PS+N L + LR ++ I V G GY E+ Sbjct: 183 RVWAGEDPPSSNVLAAQVRLLRRRLRLPGSPELIHAVYGKGYRFGPVAED 232 >UniRef50_UPI0001745DFF Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745DFF Length = 231 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L +ED T L + + A G+A D ++A Q E Y V+LD+ LP + GL Sbjct: 1 MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA RQ++ PVL+LTA D++ D++ GL GADDYL+KPFA+ EL AR+ AL+RR + Sbjct: 61 ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + +S + VG L ++ R V G + LT +E+ALL L G RE + +Y+ Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYML 216 + P +N ++ +++LR K+ I T RG GY+L Sbjct: 181 ETDSPLSNAVDTAVYSLRRKLSPPGVPQLIHTRRGLGYLL 220 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 285 bits (732), Expect = 5e-76, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 14/231 (6%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSL-EAGHYSLVVLDLGLPDEDGL 60 ++LIVEDD + + EG ++V A + L ++ + LV+LD+ LP DG+ Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 HFLARIRQKKY---TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 +R+ T+PV++LTARD T + GL+VGADDY+ KPF+ +L +R+RA LR Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 118 RHNNQGES-----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHRE 172 R ++ +L L +++ RR+V GE++ LT +E+ +L+ L G RE Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 173 ILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVA 218 + + ++ + + +VHI +LR K+ I+TVRG GY Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 14/230 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL+V+D+ + + + + EG+ + A + +E+ L +LD+ LPD DG Sbjct: 3 MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 RIR+ PV++LTA++ DKI GL +GADDY+ KPF EL AR++A LRR Sbjct: 63 TLCQRIRENHN-FPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 119 -----HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 NQ E + L L+M + + +++ LTPKE+++L L G V E Sbjct: 122 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 181 Query: 174 LYNDIYNWDNEPST-NTLEVHIHNLRDKV-----GKARIRTVRGFGYMLV 217 L+++++ ++ NT+ VHI +LR+K+ I+TV G GY + Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobium/Agrobacterium group RepID=B9K181_AGRVS Length = 218 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 81/217 (37%), Positives = 125/217 (57%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD +L L A + Y D + +++ Y++V+LD+ LP G Sbjct: 1 MRILVVEDDVILGSSLKKAFEKHAYGVDLMRDGESGLLAIQDNDYAVVILDVNLPKASGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R +PVL+LTA D++ ++ GLD GADDYLVKPF L+EL AR+RAL RR+ Sbjct: 61 EVVRTLRASGNKVPVLLLTALDSIRSRVEGLDEGADDYLVKPFDLDELLARVRALARRYE 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + E+ + GN+ L+ G L + KE+ LL LM +AG V + + +Y+ Sbjct: 121 GRTETLIRCGNVELDPSAMIARQNGTPLHVAGKEFHLLKLLMERAGRYVTKSDIEYALYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLV 217 +NT+EV I++LR K+G I+++RG GYM+ Sbjct: 181 ISAMVESNTIEVTIYSLRKKLGADFIKSIRGVGYMVE 217 >UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeria sp. R11 RepID=B7QTW7_9RHOB Length = 225 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 7/224 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD + G+ D + R A + Y ++V D +PD DGL Sbjct: 1 MRILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPDLDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + P+++LTA + D++ GL+ GADDYL KPFA+ EL ARI AL RR Sbjct: 61 SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120 Query: 121 NQGE---SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 +G+ ++L L L++ + G + L PKE+ LL LM G R +L Sbjct: 121 GEGDAPATKLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLER 180 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLV 217 +++ + EPST+ +E H+ LR+K+ K IRT+RG GYM + Sbjct: 181 VWDINFEPSTSVVETHMSRLRNKIEKPFDAEYIRTIRGSGYMFI 224 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 11/226 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +LIVED+ L L + EG+ V A E +V+LDL LP G Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 ++R + ++PV+++TARD+ DK+ GL++GADDY+ KP++ EL ARIRA+LRR + Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 GES-----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 ++ L G + +++ R V + GE + L KE+ LL LM +G + R L + Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVA 218 ++ D T TL+VH+ LR K+ + + TVRG GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 110/233 (47%), Gaps = 13/233 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIVED+ + + + E Y + L++LDL +P +DG Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 IRQ+ +P+++LTA+ D+I GL +GADDYL KPF+ EL R++ +LRR N Sbjct: 63 LCGEIRQQSN-VPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 122 QG-------ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 + +L + R V + E+ LT KE+ +L + R L Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEEN 222 I+++ +E ++NT+ V + LR+K+ K I TV G GY N N Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGRN 234 >UniRef50_C1F2N1 DNA-binding response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2N1_ACIC5 Length = 230 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTE-GYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDG 59 M+IL+VED+ L + A + G+A D + Y LV+LDL LP DG Sbjct: 1 MRILVVEDEERLAGNIAAAMREGPGWAVDLAHSGLAGRDLCLQTEYDLVLLDLMLPGLDG 60 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 L L +R K PVL+LTA I L+ GADDYL KPF L EL AR +AL+RR Sbjct: 61 LGVLRDMRGKGIATPVLVLTAVAEKASVIELLNAGADDYLAKPFDLGELLARAKALIRRG 120 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + +G L L+ + V G + L+P EY +L L + S V ++ L +Y Sbjct: 121 KGVSHPVINIGALVLDTVEKSVTCHGIPIELSPTEYRVLEFLGHRPRSVVSKQTLLEHLY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANEE 221 +++ E +N +E HI NLR K+ G A I T+RG GY LVA+ + Sbjct: 181 DYNWEHHSNVIEAHISNLRRKLNQQEGDAWIETLRGRGYRLVAHNQ 226 >UniRef50_A1TXC3 Two component transcriptional regulator, winged helix family n=2 Tax=Marinobacter RepID=A1TXC3_MARAV Length = 227 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 126/219 (57%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+ EDD L ++ + + D V + A +L + L +LDL LP DGL Sbjct: 1 MRILLTEDDHPLANTMLSMLRDDQNTVDWVDDGQQALNALLNESFDLAILDLTLPRVDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + ++R++ LP++ILTAR LT+K+ GLD GADDYL KPFA+ EL ARIRA+ RR + Sbjct: 61 DIVRQVREQGVELPIIILTARSELTEKLQGLDAGADDYLTKPFAMSELKARIRAVTRRRS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L VG L L+ Q+ +G E +L E +L LM R L +Y Sbjct: 121 GTRVSGLKVGRLVLDPDSAQLQVGTETFVLPRSELQILHYLMRHPDQVATRRRLEEQLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 WD +N LEVH+H+LR ++GK IRTVRG GYML + Sbjct: 181 WDQGAESNALEVHVHHLRRRLGKQAIRTVRGVGYMLDSK 219 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 10/223 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VEDD++LL+ L + G+ + + + H L++LD+ LP DG Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 + K+ T+P+++LTA +IAGL++GA DY+VKPF++ EL AR+RA+LR + Q Sbjct: 64 CRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 123 ----GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + L VG + L+ R+VW E+ L+ KE+ LL+ LM AG + R++L + Sbjct: 123 RQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERV 182 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYML 216 + D S T++VH+ LR+K+ IRTVRG GY Sbjct: 183 WGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 121/229 (52%), Gaps = 17/229 (7%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLE---AGHYSLVVLDLGLPDEDG 59 I++VED+ L + A + EG+ + + A + L L+VLDL LP+ DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR- 118 L R+RQ K P+L+LTAR T D++ GL++GADDYL KPF+L EL AR+ A+LRR Sbjct: 64 LEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 119 -------HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHR 171 G + + G+LT++ R+V G+ + LT KE+ LL L G R Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 172 EILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYM 215 + L + ++ D T++ HI LR K+G RI T+ G GY Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYK 231 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 114/223 (51%), Gaps = 6/223 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VEDD L+L+ + + G+ C A++ LVVLD LP DGL Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 R R+ +Y PVL+LTAR ++ L GADDYL KPF+ +EL AR++ALLRR Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 123 GESELIVGN-LTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 G + N L ++ RQV + G + L +E+ LL++L G R+ L ++ + Sbjct: 134 GYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGY 193 Query: 182 DNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVAN 219 D E T++VH+ LR+K+ + TV G GY Sbjct: 194 DFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGP 236 >UniRef50_Q2SKY7 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=Q2SKY7_HAHCH Length = 223 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 83/221 (37%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++ED +L Q L++ GY D+ Y L++LD+ LP +G Sbjct: 1 MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R VL+LTARD + D++ GL GADDYLVKPF +EL ARI ALLRR Sbjct: 61 ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +G LT+N+ +QV + G + L P+EYALL L L V R+ + + IY+ Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 EP +N ++ I +LR + + I T RG GY + Sbjct: 181 DKIEPMSNVVDSAISSLRKMIDHKDRPSFILTRRGHGYQIR 221 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLP-DEDGL 60 IL+VED+ + L EGY T A ++ L++LD+ LP D DGL Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI------RA 114 RIR +P+L+LTARD + D++AGLD GADDYL+KPFA EEL AR+ + Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 115 LLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 R + +LTL+ R + G + LT +EY LL M + R+++ Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANEE 221 ++ +D +N LEV++ NLR + ++TVRG GY L E Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYALRLPTE 236 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 128/229 (55%), Gaps = 11/229 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+ +DD + + + L + + + T R A + +E +V+LD+ +P DG Sbjct: 33 MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 IR KK+ P+++LTA+D D++ GL++GADDY+ KPF+ E+ ARIRA++RR Sbjct: 93 EACREIR-KKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151 Query: 121 NQGESE-------LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 + + E + LT+++ +R+V + GE++ PKE+ LL +L+ GS RE Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211 Query: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKVGK---ARIRTVRGFGYMLVAN 219 L ++ +D T++VHI +R ++ K I+TV G GY + Sbjct: 212 LLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYDCIQTVWGIGYKFGVD 260 >UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobacteria RepID=Q0I8A9_SYNS3 Length = 250 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 118/231 (51%), Gaps = 14/231 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGH-YSLVVLDLGLPDEDG 59 ++IL+V+D+ L + L L EGY + + + L+VLD LPD G Sbjct: 12 IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 + RIR T P+L+LT D + D++ LD G DDYLVKPF++EEL AR+RA+ RR Sbjct: 72 VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131 Query: 120 NN---------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVH 170 + L VG LT+N R V G+++ L+ KEY LL LM G + Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191 Query: 171 REILYNDIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 R + ++ D N L+V+I LR KV + I TVRG G++L Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVENKDLPSLIHTVRGVGFILR 242 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 8/225 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ + + L + ++ + + + A + + L++LDL LP+ G Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +IRQ K P+L+LTA+ T DK+ G GADDYLVKPF+L EL ARI+A+LRR N Sbjct: 64 VCQKIRQDK-QTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 122 QGES----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + E G L ++ R +V + G + LT E+ +L L+ G RE L Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLVAN 219 + + + T++ HI N+R K+ I TV G GY + Sbjct: 183 VMGLEYKGYDRTIDAHIKNIRKKLNLEKNQLIITVYGVGYKFEGD 227 >UniRef50_Q31JS2 Two component transcriptional regulator, winged helix family n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31JS2_THICR Length = 223 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 82/218 (37%), Positives = 115/218 (52%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+VED+ LL++ L + Y DS A L Y L++LDLGLP + GL Sbjct: 3 KILLVEDEALLVENLKKNLSQQQYIVDSALDGEEALYLLNEFEYDLIILDLGLPKKSGLQ 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L +IR + T PVLILTAR+T +++ GL GADDYL KPF EEL ARI LL+R Sbjct: 63 VLEQIRADQNTTPVLILTARNTWQERVEGLKKGADDYLGKPFHFEELLARIEVLLKRPTQ 122 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 L L++ R++ + + LT E+AL + ++ L + + Sbjct: 123 PQARRLQFQEYELDLDCRELKVKEQRFALTKTEFALARLFLSHPNRVFSKDTLMQRLGDQ 182 Query: 182 DNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 +E +N +EV+I LR +GK I T+RG GY V Sbjct: 183 HHERDSNLIEVYIRKLRQYMGKTAIETLRGQGYRFVGE 220 >UniRef50_C8W872 Two component transcriptional regulator, winged helix family n=2 Tax=Atopobium RepID=C8W872_ATOPD Length = 224 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+ ED+ + ++ + E Y D +T A +LE+ Y + +LD+ +P G Sbjct: 1 MRVLLAEDEKRMAAAIVALLKQEKYDVDHMTDGASALLALESNMYDIAILDVMMPKMSGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + R K T+P+L+LTA+ L DK+ GLD GADDYL KPF EL AR+RAL RR + Sbjct: 61 EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRALGRRSS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMG--GEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + E+ L G+L+L+ + G+ + L+ KE +L ++ G + R+ L I Sbjct: 121 SFQENVLCFGDLSLDSTTATLTCETSGQSVRLSEKELRILEYMIGNHGRIMTRDQLAIKI 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 + ++++ N +EV++ R K+ I+ VRG GY L Sbjct: 181 WGFESDAEYNNVEVYMSFTRKKLAFIGSTVEIKAVRGLGYELR 223 >UniRef50_C1XYD1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XYD1_9DEIN Length = 226 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 3/225 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDED-- 58 M++L+VEDD L + + +G D A + + E Y L++LD+ LP+ Sbjct: 1 MRVLLVEDDPRLAALIAEGLRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQA 60 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 G +R ++ +P+L LTAR + K+ GLD G DDYL KPF EL ARIRAL+RR Sbjct: 61 GFDLARTLRNQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRR 120 Query: 119 HNNQGESELIV-GNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + + + + L++ QV GG+ + LTP+EYAL+ L L G R L Sbjct: 121 AKGEAANLIPLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIER 180 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 ++ ++E T ++V++ +LR K+G+ + TVRG GY L EEN Sbjct: 181 VWPGESEVDTKVVDVYVSSLRRKLGEDFVETVRGLGYRLGRMEEN 225 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 7/224 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILI+ED+ + L + EGY + + + A LV+LD+ +P DG Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 A +R+ +P+L+LTA+ + D++ GLD GADDYLVKPF+ +EL AR+RA+LRRH Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 122 QGESE--LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + + L G + ++M ++ G ++L T KEYA+L L G P+ RE + ++ Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVA 218 + P+T T++ HI +LR K+ I+TV G GY L Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_C6QB49 Two component transcriptional regulator, winged helix family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QB49_9RHIZ Length = 229 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 117/216 (54%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++IL++EDD + L+ G+ + Y+ +LDLGLP GL Sbjct: 13 IRILLIEDDDEIADRLVAGLARAGFTVERADNGADGYAMGLDDTYAAAILDLGLPQMQGL 72 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R LPVLIL+AR T +K+ GL+ GADDY+ KPF + E+ AR++AL+RR + Sbjct: 73 DVLKRWRASDRKLPVLILSARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALIRRAS 132 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G ++L+ +V GE + LT +E +L+ M + G V + L + +Y Sbjct: 133 GIASPVLSHGGISLDTTSNRVCQNGESIELTARELKMLTYFMHRIGRIVSQAELVDHLYA 192 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 ++ +NT+EV+I LR K+G I TVRG GY + Sbjct: 193 LEDSRESNTIEVYISRLRRKLGADVITTVRGLGYRM 228 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 9/228 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VEDD + L A GY S + R A + L+VLD+ LPD DG Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 +R + PVL LTAR + D+I GL G DDY+ KPF ++E+ R+RA+LRR Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 123 GE-----SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 L L+L+ +V G L L+P E+ LL+ + + + + Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE 221 ++ +D T ++ ++ NLR K+ A + TVRG GY L + Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLRLPRD 240 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 284 bits (728), Expect = 1e-75, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 113/221 (51%), Gaps = 7/221 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+V+D+ + + GY TT Q L+VLDL LP DG+ Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 AR+R+K + +L+LTAR D++AGL VGADDYL KPF+ EL AR+ A+LRR + Sbjct: 65 TARLREKS-DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 123 G--ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S + ++ ++ R+ G+ L LTP E+ LL L + RE L ++ Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLV 217 D + ++V++ +R K+ G+ IRT RG GY V Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRFV 224 >UniRef50_B2TDT5 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=B2TDT5_BURPP Length = 227 Score = 284 bits (728), Expect = 1e-75, Method: Composition-based stats. Identities = 88/220 (40%), Positives = 132/220 (60%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD + Q L+ A + Y+ D V ++ Y++V+LDLGLP G+ Sbjct: 1 MRILLVEDDLQIGQSLLRALKDADYSVDWVRDGVAGRDAMANAEYTVVLLDLGLPGLSGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R +PVLILTARD L ++ GLDVGADDYL+KPF + EL ARIRA+LRR Sbjct: 61 ELLKSSRAAGNAVPVLILTARDDLDSRVQGLDVGADDYLLKPFDVPELLARIRAVLRRKA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L +L+L++ +R + G +L+ +E+AL+ + + G+ + RE L + +Y Sbjct: 121 GYASSRLGDESLSLDLDKRTLTCNGATTVLSAREFALMLAFLERPGTILSREQLEDRLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANE 220 W E +N ++V IH++R K G + IR VRG G+ ++ E Sbjct: 181 WGKEVESNAVDVLIHSVRKKFGLSVIRNVRGLGWTVMLGE 220 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 284 bits (728), Expect = 1e-75, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 119/234 (50%), Gaps = 15/234 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 ILIV+D+ + + L + + E + + + A + +Y+ ++LDL LP+ DG+ Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN-- 120 ++R+ K P+++LTA+ T+++ G + GADDY+VKPF+ E+ R++ALLRR Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 121 ------NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 + +L ++ +V +E+ LTPKEY LL L RE L Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVGKA------RIRTVRGFGYMLVANEEN 222 ++++++ T++ H+ LR+K+ + I+TV G GY + Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSND 237 >UniRef50_A6W2Y0 Two component transcriptional regulator, winged helix family n=2 Tax=Oceanospirillales RepID=A6W2Y0_MARMS Length = 223 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 83/219 (37%), Positives = 125/219 (57%), Gaps = 2/219 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD +L + + G+ D T A Q L Y L++LDL LPD G Sbjct: 1 MRILVVEDDRILGEAISQRISRMGHGLDLAQTGLQANQMLALQEYDLMLLDLNLPDMTGN 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+K PV++LTARD + D+I LD+GADDY+ KP EL AR RALLRR Sbjct: 61 QILQTLRKKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALLRRSQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q ++ + GN++LN+ V + G + L +E+ LL + G + +E L IYN Sbjct: 121 GQAQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIEHIYN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLV 217 ++ P+++ +E+++ LR + + IRT+RG GY+L Sbjct: 181 FNENPNSSVIEIYVARLRKSLQDSDINIRTIRGLGYLLE 219 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 114/228 (50%), Gaps = 6/228 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL+VEDD L + E + + V + + ++ +Y L +LD + + GL Sbjct: 1 MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 IR P+L+LTARD + D++ GL+ GADDYL+KPFA EEL ARI AL RR Sbjct: 61 ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + E +TL+ +V+ G+ L LT KE+ LL + + R+ + N + Sbjct: 121 VSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNYV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANEEN 222 + D + N ++ I LR KV + I VRG GY L EN Sbjct: 181 WGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRLYVAGEN 228 >UniRef50_B9JKK7 Two-component response regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JKK7_AGRRK Length = 220 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 86/213 (40%), Positives = 122/213 (57%) Query: 4 LIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFL 63 +I ED+ ++ + + + Y +VT A + H+ LV+LDLGLP DGL L Sbjct: 1 MIAEDEPTIVSDMRRCLEDQHYIVSTVTDGEEAWYRGDVEHFDLVILDLGLPKLDGLTVL 60 Query: 64 ARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQG 123 R R + +PV+ILTARD DK+ G+D GADDYL KPF +EEL AR+RAL+RR Q Sbjct: 61 RRWRAGRRGMPVIILTARDGWRDKVDGMDAGADDYLTKPFRMEELLARVRALMRRAAGQS 120 Query: 124 ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWDN 183 L G L L+ +R V G+ + +T EY LL+ L+ AG+ + R + + IY+ + Sbjct: 121 SPILSNGVLELDTRQRTVSFRGQPVQVTALEYRLLAYLLHNAGTVLSRSQIADSIYDEET 180 Query: 184 EPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 E +N LEV + LR K I T RG GY++ Sbjct: 181 ELLSNALEVVVARLRRKFDGTVIETRRGQGYLI 213 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 114/222 (51%), Gaps = 8/222 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VEDD + L A GY+ + T + A G L+VLD+GLPD DG Sbjct: 15 VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR---- 118 +R + PVL LTAR + D+I GL G DDY+ KPF ++E+ RIRA+LRR Sbjct: 75 TRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDMP 134 Query: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 L +L L+ +V G + L+P E+ LL L+ + V ++ + ++ Sbjct: 135 PSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILSE 194 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYML 216 ++++D ++ ++ NLR K+ I+TVRG GY L Sbjct: 195 VWHYDFAGDARIVDTYVRNLRRKIDRFEPQLIQTVRGVGYCL 236 >UniRef50_D1VIP6 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VIP6_9ACTO Length = 248 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLE-AGHYSLVVLDLGLPDEDGLH 61 +++VEDD + + A + + V+T R A + SLVV+D+ LPD DG Sbjct: 27 VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R++ +PVL L+AR L D++ GL GADDYL KPF++EEL ARIR +LRR Sbjct: 87 VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGV 146 Query: 122 QGE-SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E S L G L L+ R+V +GG + L+P EY LL L+ AG V R + + +++ Sbjct: 147 LTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVWD 206 Query: 181 WDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLVAN 219 + + + +E I +LR KV I TVRG GY L Sbjct: 207 YGFDGESTVVETFISSLRKKVDTAPPTLIHTVRGVGYRLSEE 248 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 339 3e-92 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 337 1e-91 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 335 5e-91 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 335 5e-91 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 333 2e-90 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 333 2e-90 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 332 4e-90 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 332 4e-90 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 328 9e-89 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 327 2e-88 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 325 8e-88 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 325 8e-88 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 324 1e-87 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 324 1e-87 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_Q026B5 Two component heavy metal response transcription... 323 2e-87 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 323 3e-87 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 323 4e-87 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 323 4e-87 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 322 4e-87 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 322 4e-87 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 322 5e-87 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 322 6e-87 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 322 7e-87 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 321 9e-87 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 321 1e-86 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 320 1e-86 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 320 2e-86 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 320 2e-86 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 320 3e-86 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 319 3e-86 UniRef50_B8G179 Two component transcriptional regulator, winged ... 319 3e-86 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 319 5e-86 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 319 5e-86 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 319 5e-86 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 319 5e-86 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 319 5e-86 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 318 9e-86 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 318 9e-86 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 317 1e-85 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 317 2e-85 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 317 3e-85 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 316 4e-85 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 316 4e-85 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 315 5e-85 UniRef50_B8G869 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 315 7e-85 UniRef50_UPI00017468BB two component transcriptional regulator, ... 315 8e-85 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 315 9e-85 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 315 9e-85 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 314 1e-84 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax... 314 1e-84 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 313 2e-84 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 313 2e-84 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 313 4e-84 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 312 7e-84 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 312 7e-84 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 312 7e-84 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 312 8e-84 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 311 9e-84 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 311 9e-84 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 311 1e-83 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 311 1e-83 UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged ... 311 1e-83 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gamma... 310 2e-83 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 310 2e-83 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 310 3e-83 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 310 3e-83 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 309 3e-83 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 309 4e-83 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 308 6e-83 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 308 8e-83 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 308 9e-83 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 308 1e-82 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 308 1e-82 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 308 1e-82 UniRef50_C7MME5 Response regulator with CheY-like receiver domai... 308 1e-82 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 308 1e-82 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 307 1e-82 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax... 307 1e-82 UniRef50_Q2RPG3 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_P30843 Transcriptional regulatory protein basR n=126 Ta... 307 2e-82 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 307 2e-82 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 307 3e-82 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 306 3e-82 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 306 4e-82 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 306 4e-82 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 305 5e-82 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 305 6e-82 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammapro... 305 6e-82 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 305 7e-82 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 305 8e-82 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 305 8e-82 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 305 9e-82 UniRef50_Q97LA9 Response regulator (CheY-like receiver domain an... 305 1e-81 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 305 1e-81 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_A4CE30 Probable two-component response regulator transc... 304 1e-81 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q20YF2 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 304 2e-81 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 304 2e-81 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 304 2e-81 UniRef50_B0C620 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 303 2e-81 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_UPI00016C506D two component transcriptional regulator, ... 303 3e-81 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 303 3e-81 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 303 3e-81 UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=... 303 3e-81 UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydroba... 303 3e-81 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 303 4e-81 UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaprot... 302 5e-81 UniRef50_Q2S8G9 Response regulator consisting of a CheY-like rec... 302 5e-81 UniRef50_C1SIE7 Response regulator with CheY-like receiver domai... 302 5e-81 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 302 6e-81 UniRef50_Q6AQP4 Probable two-component system response regulator... 302 6e-81 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 302 8e-81 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 302 8e-81 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 301 1e-80 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria... 301 1e-80 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 301 1e-80 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 301 1e-80 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 301 1e-80 UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria R... 301 1e-80 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_A5WDA5 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_B2JHN0 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 300 2e-80 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 300 3e-80 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 300 3e-80 UniRef50_C6CH89 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 300 3e-80 UniRef50_C6Q063 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 300 3e-80 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 300 3e-80 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 299 3e-80 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 299 4e-80 UniRef50_UPI0001B559F0 two-component system, response regulator ... 299 4e-80 UniRef50_B2HUW9 Response regulator consisting of a CheY-like rec... 299 5e-80 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 299 5e-80 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 299 5e-80 UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acineto... 299 5e-80 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 299 6e-80 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 299 6e-80 UniRef50_D1C280 Two component transcriptional regulator, winged ... 298 7e-80 UniRef50_Q6FA81 Putative two-component response regulator n=1 Ta... 298 8e-80 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 298 8e-80 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_UPI0001C16C1D manR (Two component Transcriptional regul... 298 1e-79 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 298 1e-79 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec... 297 1e-79 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 297 2e-79 UniRef50_C6VUR1 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q3MAE8 Response regulator receiver modulated diguanylat... 297 2e-79 UniRef50_C1ABP4 OmpR family two-component response regulator n=2... 297 2e-79 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 297 2e-79 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 297 2e-79 UniRef50_C4L340 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobac... 297 2e-79 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 297 3e-79 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 297 3e-79 UniRef50_Q3M194 Multi-component transcriptional regulator, winge... 297 3e-79 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_C9ZA01 Putative two-component system response regulator... 296 3e-79 UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellula... 296 3e-79 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 296 3e-79 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 296 3e-79 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_A9HHL1 Probable two-component response regulator transc... 296 4e-79 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 296 4e-79 UniRef50_C1ZD82 Response regulator with CheY-like receiver domai... 296 4e-79 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 296 4e-79 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 296 5e-79 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 295 5e-79 UniRef50_A6M1X5 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_A6TPN8 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_Q2BR69 Two component Transcriptional regulator, Winged ... 295 6e-79 UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter... 295 6e-79 UniRef50_A9BQG9 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 295 7e-79 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_A5FBX2 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 295 8e-79 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 295 8e-79 UniRef50_D1VIP6 Two component transcriptional regulator, winged ... 295 9e-79 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 295 9e-79 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 295 9e-79 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 295 1e-78 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 294 1e-78 UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax... 294 1e-78 Sequences not found previously or not previously below threshold: >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 339 bits (872), Expect = 3e-92, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L EGYA D V A Y +VLDL LP DG Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R+ PVL+LTAR + D+I GLD GADDYL KPF+ EL AR+RAL+RR Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + L +G+L L+ +V G L L+ KE+ALL LM + R + + +++ Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANEEN 222 + + ++N ++ ++ +R K+ G + I TVRG GY L E Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLRTPAET 255 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 337 bits (867), Expect = 1e-91, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 135/222 (60%), Gaps = 4/222 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ + + + A + EG+ D + A + A Y VLD+ LP DG+ Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R++ +LP+L+L+AR DKI GL+ GADDYL KPF+++EL AR+RAL+RR Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 G S VGNLTLN+ R+V+ G +++ LT KE+++L LM G R + ++N Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVA 218 + +P TN ++V+I LR K+ + I+TVRG GY + A Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIEA 267 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 335 bits (862), Expect = 5e-91, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + + + EG+ D + +Y ++LD+ LP G+ Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 HFLARIR-QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 +R ++K +P+L+LTA ++ +++ GL+VGADDY+ KPF L EL AR+RAL+RR+ Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + L G+L +N+ R+V GE L L+ KE++LL M G RE + + ++ Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANEE 221 EP +N ++V++ LR K+ +I TV GY L ++ Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLKKEDD 226 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 335 bits (862), Expect = 5e-91, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VED+ L Q + L + EGY V + + L++LD LP GL Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 R+RQ +P+++LTA+D ++D++AGLD GADDY+VKPF LEEL AR+RA LRR++ + Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 L +L+LN R+V+ G + LT KE+ LL LM + R+ + ++ +D Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 183 NEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVA 218 +N +EV++ LR K+ K I+TVRG GY+L Sbjct: 186 FMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVLRD 225 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 333 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 134/224 (59%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEA--GHYSLVVLDLGLPDED 58 MKILI+ED+ L L + EGY D A+ +E Y LV+LD+ LP D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 G+ +R K + P+L+LTA+D + DKI GL+ GADDYLVKPF+ EEL ARIRALLRR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 N + L V +++L+ ++V+ G E++LT KE+A+L LM + +E + + + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 + ++++ +N +E HI NLR K+ + R I T+RG GY + Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIKE 224 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 333 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 116/225 (51%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ L L + YA D Y L +LD+ LP GL Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ PVL+LTA+DT+ D++ GLD GADDYLVKPF +EL AR+RAL RR Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 G + G L++ R V GE L LT KE+ LL M + +E++ + ++ Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 D + N +E ++H LR K+ + I TVRG GYM + Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMFHPDP 225 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 332 bits (854), Expect = 4e-90, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VED+ + ++ + +GY + + Y ++VLD+ LP DGL Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ T+PV+++TAR L +++ GL++GADDYL KPF L+EL ARI+AL RR + Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + S + VG+L +N+ R+V GE + LT +E+ LL LM G + R + ++ Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 +D +PSTN ++V + LR KV I TVRG GY + Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRMRKE 239 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 332 bits (854), Expect = 4e-90, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 135/226 (59%), Gaps = 4/226 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L + + E Y DS A + +E Y ++LD+ LP DG Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + RIR KK +P+L+LTARD + DK+ GLD GADDYLVKPF EEL ARIR LLRR++ Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ + V NL +++ + V+ G + L+ +EY++L L+ G + RE + + I+N Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEEN 222 ++ E TN ++V+I LR K+ I T+RG GY+L + EN Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVLRVDNEN 226 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 328 bits (842), Expect = 9e-89, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VEDD L+ L + YA + + A +E Y L++LD+ LP DG+ Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR +P+L+LT RD+ DK GLD GADDY+VKP EEL AR+RALLRR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G L L+ +V ++L LTPKEYALL LM ++ + +++ Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEEN 222 +++ P + + HI LR K+ + TV G GY L E + Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQEND 227 Score = 93.2 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 6/116 (5%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +KIL+V+DD L+ L + G ++ + E H +++LD+ +P G+ Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 HFLARIRQ--KKYTLPVLILTARD--TLTDKIAGLDVGADDYLVKPFALEELHARI 112 IR + +P+L LT + +++ VGADD++ KP + EL RI Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRI 495 Score = 70.9 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+ +DD + Q L GY +V + A H +++LDL +P +G Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 LARIRQKKY--TLPVLI 77 +A +++ +P++I Sbjct: 1136 MAGLKKCSDTKDIPIVI 1152 Score = 42.0 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILI+EDD L L T R A + + L++LDL LP+ DG Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264 Query: 62 FLARIRQKKY--TLPVLILTARD 82 + ++Q ++PV++ +A+D Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKD 1287 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 132/222 (59%), Gaps = 3/222 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD + ++ + EGYA D + Y V+D+ LP+ DGL Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + R+R ++ +PVL L+AR ++ D++ GL G DDYL KPFA EL AR++AL+RR + Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 121 NQGESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 E+ L G++TL++ R V +GG+ + L P+E++LL L+ AG PV + ++ ++ Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLVAN 219 ++ +P TN ++V + LR K+ RI T+RG GY+ A Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPDKTRIETLRGVGYVFKAG 227 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIV+D+ + + + Q GY C+ A L G + LV+LD+ +P DG+ Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH-- 119 L +R + PV+ILTAR DK+AGL+ GADDY+VKPF+ EL AR++A+L R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 120 -NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + + G LT++ V + GE++ LTPKE+ LL L G + RE + + Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK--ARIRTVRGFGYMLVAN 219 +N+D T++ H+ LR +GK I TV G GY + Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGKCRGYIATVWGIGYKFDPD 296 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 325 bits (834), Expect = 8e-88, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIVED+ L L+ E Y+ D+ A + Y L+VLD+ +P +GL Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R +T PVL+LTA+DT+ D++ GLD+GADDYLVKPFA +EL ARIR L+RR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + +L ++ +V G + + L+ KE+A+L ++ + R+ + ++N Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANE 220 +D E +N ++V++ LR KV I TVRG GY+L Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVLRVES 236 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 325 bits (834), Expect = 8e-88, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LI+ED+ + + L + E +A D+ + + Y L ++D LP G+ Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R+ +PV+ LTARDTL D + GL GADDY+ KPFA EEL ARIRA LR++ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L L+ + +L LTPKE+ALL L+ R + +++ Sbjct: 121 PTTGP-LTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWD 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANEEN 222 + T+ ++V+++ LR K+ A I+TVRG GY++ E N Sbjct: 180 IHFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVIRTPEAN 225 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD LL Q + A + Y D + + +Y L++LD+ LP DG+ Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++RQ+ Y + +L+LTA+DT TDK+ GLD GADDY+VKPF +EL ARIRALLRR N Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G+L L+ +V L LT KE++LL + R + + +++ Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 181 WD-NEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVA 218 + + P NT++ HI +LR K+ I TV G GY L A Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKA 224 Score = 75.5 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 10/117 (8%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +I++VEDD +L + + +T G ++ + +L L++LD +P +G+ Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 FLARIRQKKYT--LPVLI----LTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 +R LPV+ L+A + ++I +GADD + KP L A I Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACI 611 Score = 39.7 bits (93), Expect = 0.079, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 17/107 (15%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L++ +D +++GL+ A+ +G T A + + + +V+LDL + +ED L Sbjct: 355 LLVISNDRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDI-EEDSLKL 413 Query: 63 LARIRQKK----------------YTLPVLILTARDTLTDKIAGLDV 93 L + Q+ +PVL+ T R+ +D GL + Sbjct: 414 LIELSQRSATLGGTPSPTVGETPTPQIPVLVFTERNNFSDACGGLRL 460 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD +L L+ + + YA + ++ + +A +Y L++ D+ LP DG+ Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R + P+L++TA+D +D+I GLD GADDYL+KP L EL AR+RALLRR + Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L VG L L+ +V + L LTPKEY+LL L+ R + ++ Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANE 220 +D+ P T++ HI LR K+ I V G GY L + + Sbjct: 181 FDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLKSQK 224 Score = 102 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+V+DD L+L L + G + + L++ L++LD+ +P G+ Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561 Query: 63 LARIRQKK--YTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R LP++ LTA + G DDY+VKP EL ARI L R Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLERSR 621 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 124/222 (55%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +++L+VEDD L + L A GY D + Y VVLD+GLP DG+ Sbjct: 29 VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 88 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+ +PVLILTARD +DK+ G D GADDY+ KPF LEE+ ARIRALLRR Sbjct: 89 SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +SEL G + L+ +V + G + LT EY LL+ LM +G V R L +Y+ Sbjct: 149 GHAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 208 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 D + +NT+EV + +R K+ I+TVRG GY+L + Sbjct: 209 QDFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLLTPPPAD 250 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 95/225 (42%), Positives = 133/225 (59%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ + L + GYA D+ T A + Y LVVLD LPD DGL Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R +K PVLIL+AR L D++ GL+ GADDYLVKPFA EL AR+RALLRR Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRR-G 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L V +L L+ RR+V G E + L PKE+ +L +M G P+ R ++ +++ Sbjct: 120 QPTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANEE 221 D + TN ++V+I +LR K+ I+TVRG GYM+ A ++ Sbjct: 180 MDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIEAPDK 224 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L+VED+ + + + + + Q+ + +++LD+ LP DGL Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ+ P+++LTAR+ L D++ GLD+GADDYL KPF +EELHARI+ALLRRH Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + VG L L+ R + G+ + LT +E++LL LM + R L ++ Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDK---VGKA-----RIRTVRGFGYML 216 +D +P TN ++V I +R K + KA I ++RG GY L Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 91/219 (41%), Positives = 131/219 (59%), Gaps = 1/219 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + + GY+ DS A HY L+VLDL +P DGL Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 FL R R K PVLILTA+D + D + GLD GADDYLVKPF +EL AR+R L+RR++ Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 SE+ G L +++ ++ V GE++ LT KEY +L LML G + R+ + +++ Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK-ARIRTVRGFGYMLVA 218 +D +N ++V I N+R K+G+ I+T RG GY++ Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEAIQTKRGLGYVVKD 219 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 120/236 (50%), Gaps = 16/236 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L ED+ + + + + +G+ + +A + Y +++LD+ +P +DGL Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ PV++LTARD L D++ GL++GADDY+ KPF +EEL ARI A++RR Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMG------------GEELILTPKEYALLSRLMLKAGSP 168 + + + VG L+ R V + + LT +E+ LL LM G Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 169 VHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 R + ++ +D PSTN ++V I LR K+ + I +VRG GY E Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRFRQAE 236 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++EDD + L + GY D+ + Y L+++D LP+ DGL Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R PVL+L+A + D++ GL G DDYLVKPF+ EL ARI ALLRR Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 NQGE--SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 Q + + L V +L +++ R V G + L P+E+ LL M G + R +L + Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 +++ +P TN ++VHI LR K+ K + T+RG GY+L Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVLRE 224 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDD +L L+ + + Y D+V R + Y L+++D+GLP +DG+ Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R + +P+L++TA+D D+IAGLD GADDYL KP L EL AR+RALLRR + Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L VGNL L+ QV L LTPKEY LL + G R L ++ Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANE 220 +D+ P +++ H+ LR K+ I + G GY L + Sbjct: 181 FDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLNPPD 224 Score = 91.7 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 6/122 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+V+DD + L+ ++L Q G + L + L++LD+ +P G+ Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441 Query: 63 LARIRQKK--YTLPVLILTA-RD-TLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 +R +LP++ LTA RD ++ VGADD++ KP + EL RI L R Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQV--FTVGADDFVTKPVVVPELLTRIINRLER 499 Query: 119 HN 120 Sbjct: 500 TR 501 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILIVEDD L L + YA + + A + ++ Y L++LD+ LP DG+ Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR +P+L+LT D+ +K GLD GADDY+VKPF EEL AR+RALLRR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L GNL L+ +V L LTPKEYALL + + ++ I++ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEE 221 +++ P + HI LR K+ + TV G GY L A EE Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEE 226 Score = 88.6 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+L V+DD +L L G ++ R ++L + L++LD+ +P +G+ Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 FLARIRQKKY--TLPVLILTA-RD-TLTDKIAGLDVGADDYLVKPFALEELHARI 112 +R LP+L LT +D + +++ VGADD++ KP EL RI Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRI 494 Score = 81.3 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+ +DD L+ L + GY +V T + A S H ++VLDL +P +G Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 LARIRQKKYT--LPVLI 77 +A +++ T +P++I Sbjct: 1441 MAMLKESTETKHIPIVI 1457 Score = 44.3 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++ILIVEDD L + + + S T R A + + L++LDL LP+ DG Sbjct: 1501 VRILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGF 1560 Query: 61 HFLARIRQKKY--TLPVLILTARD-TLTDKIAGLDVGADDYL------VKPFALE--ELH 109 + +++ + +PV++ +A+D +++ L +G ++L K F EL Sbjct: 1561 AVVDWLQKHQRLCNIPVVVYSAKDLDESERKR-LKLGHTEFLTKGRVTTKEFEQRVIELL 1619 Query: 110 ARI 112 RI Sbjct: 1620 QRI 1622 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 322 bits (827), Expect = 5e-87, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VEDD L + + A +++ Y + T + + E Y L++LDL LP DG+ Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F + R+K P+L++T +D + K+ LD GADDYLVKPF ++EL AR+RALLRR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L LN QV GE + LT KEY +L + + L +++ Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVAN 219 +D P+ N + I +LR K+ I TV G GY L N Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKN 224 Score = 102 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KI+IV+DD LL+ + + G++ + ++ LE L++LD+ +P+ G+ Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 FLARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 +R + LP+L L+ G GADDY+ KP EL RI Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 47.4 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDG-- 59 +LIV++D +L+Q ++ A+ G T A++++ +++LD+G PD + Sbjct: 374 HLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEIC 433 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP 102 L L IRQ +P +I + ++ + ++ +GA +L KP Sbjct: 434 LELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKP 476 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + + + Y+ DS A + Y L++ D+ +P+ DG Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F+ R+R+ K PV++LTA+DTL DKI GLD GADDY+VKPF +EL ARIR L+RR+ Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + ++ L++ ++QV GE + LT KEY +L LM S + R+ + N +++ Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVAN 219 +D + ++N ++V I N+R K+ K I T RG GY + Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGYFVKEK 223 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ + A Q E +A D A + +VLD+ LP DGL Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++RQ+K PVL+L+AR + +++ GL+ GADDYL KPFAL EL AR+R++ RR N Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L V +LTL+ RQ GG LT +EY LL LM G R + +++ Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 +D +P TN ++V+I LR+KV + TVR GY++ Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMKEQS 224 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 322 bits (826), Expect = 7e-87, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 124/232 (53%), Gaps = 17/232 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEA---------GHYSLVVLDL 52 +IL+VED+ ++ + L Q EG+ D R A + + LVVLDL Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 GLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 LP +GL F +R++ T+P+L+L+A+DT TD++ GL++GADDYL KPF EL AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 RALLRRHNNQG---ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 RALLRR NQ + L L L +V + EL L+PKE+ LL M Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYML 216 R+ L I+ D + T++VHI LR+K+ + + TVRGFGY L Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 9/228 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +LIV+DD L + L + EG++ D + + +E +Y+ V+LD+ LP+ DG Sbjct: 6 VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65 Query: 63 LARIRQK--KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR +P+++LTA+ DKI GL +GADDY++KPF+ EL AR+RAL+RR Sbjct: 66 CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQ 125 Query: 121 --NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + L G+LT++ +V++ E+ L PKE+ LL L+ RE + I Sbjct: 126 DFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKI 185 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEE 221 + + T T++ H+ +R K+ I+TV G GY E Sbjct: 186 WGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVKNE 233 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDD + + YA D+V + + Y +++LD+ LP DG+ Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R ++ P+L+LTA++ D + GL+ GADDYLVKPF EL ARI+AL RR Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L NL LN +V G+ L LTP EY+LL + R+++ + I+ Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEE 221 D P T+ HI LR K+ + I+TV GFGY L +E Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGELQE 226 Score = 83.6 bits (207), Expect = 4e-15, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +++++DD L+ L G+ S++ + LEA + L++LDL +P GL+ Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 LARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELH 109 +R+ ++P+L L+ D L GAD YL K A+EEL Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 91/218 (41%), Positives = 116/218 (53%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILIVED+ L L + G+ D A E Y ++LDLGLP DGL Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R K PVL+LTAR L +KI GL+ GADDYL KPF + EL AR++AL+RR Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L +G + L+M QVW G + LT E+ +L LM G V R L + IY Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 D + +NT+EV I +R K I TVRG GY + Sbjct: 181 QDFDRDSNTVEVFIGRIRKKTHADLIETVRGLGYRINE 218 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 131/224 (58%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ +L + E D+ + A + Y ++V+D+ +P DG+ Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA++R T PVL+LTA+D+L DK+ L+ GADDYLVKPF LEEL ARI AL RR+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++++ VG LT+N+ +R V GE + LT KE+ LL L + R+ + + ++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANE 220 +D E +N ++V+I NLR K+ I+TVRG GY+L Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLKTEN 224 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 320 bits (823), Expect = 1e-86, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+EDD + + L + + + D + +AG+Y L++LDL LP DG+ Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R Y +L+LTARDT +KI GLD GADDYLVKPF LEEL ARIRAL RR Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L+ G+L L+ V G + L LT KEY +L + + R + + ++ Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANE 220 +D T++ HI NLR K+ + I TV G GY L E Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRLCPKE 225 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 101/214 (47%), Positives = 131/214 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L +G+ A + EGY D + A +L + LV+LDLGLP DGL Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R +PVL+LTARD +D+IAGLD GADDYLVKPF + EL AR+RALLRR Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N+ E L + L+ +QV G + L KE+ LL L+ + G + R+ L +Y Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGY 214 WD + +N LEVHIH+LR K IRTVRG GY Sbjct: 196 WDEDVESNALEVHIHHLRKKFFPELIRTVRGVGY 229 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ILIVED+ + + L L + EGY+ + G YSLV+LD+ LP GL Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L R+R+ PV++LTARD++ DK+ GLD+GA+DY+ KPF +EEL ARIRA LR++ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 QGESE---LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + E L +L +N R+V G +E+ LTP+E+ LL ++ + RE + + + Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVA 218 + +D TN ++V+I +R K+ K I T+RG GY + Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIKG 228 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L + + + D ++ Y ++VLD+ LP +G Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + IRQ+K PVL+LTA ++ DK+ G + GADDYLVKPF EL AR+RAL +R + Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 --NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + L V +L L++ + G + + LT KE+ LL LM G V R + + Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVAN 219 ++ + TN ++V+++ LR K+ K I TV G GYML + Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLKED 230 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 116/227 (51%), Gaps = 11/227 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+VEDD L + L EGY + A + SLV+LD+ LP DG Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 IR + ++P+L+LTAR + +DK+ GL+ GADDYL KPF + EL AR++ALLRR Sbjct: 91 LCRLIRTES-SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 122 QGESE-----LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 Q L +G+L + + R V G L +PKE+ L S ++ RE L Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVA 218 ++ +D T T++VHI LR K+ + TVRG GY Sbjct: 210 KVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 319 bits (820), Expect = 3e-86, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD + ++ + G+A D Y + ++D+ LP DGL Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R++K P++IL+A+ ++ D++ GL+ G DDYL KPF+ EL AR++AL+RR Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 121 NQGESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + E L VG L++N+ R+V G + L P+E+ALL M G + + ++ ++ Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 ++ +P TN ++V + LR+K+ + + T+RG GY+L Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLKE 223 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 319 bits (820), Expect = 3e-86, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +KIL+VEDD ++ + + + EGY A + L LV+LD+ LP+ DGL Sbjct: 2 VKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGL 61 Query: 61 HFLARIR--QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR- 117 +IR Q+ +P+++L+ARD + D++ GL++GADDY+ KPF+ EL ARI+A LR Sbjct: 62 DVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLRE 121 Query: 118 --RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 R++ L G+L + V + GE++ LT KE+ LL M + RE L Sbjct: 122 ERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLL 181 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVG--KARIRTVRGFGYMLVAN 219 ++ + T T++VHI NLR K+ I +VRG GY L N Sbjct: 182 QKVWGYTVSGDTRTVDVHISNLRSKLKSVSPIIESVRGVGYRLAVN 227 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 4/221 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 IL++ED+ L + + EGY + ++ + LV+LD LP GL Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R+R +PV+++TARD ++D+ AGLD GADDY+VKPF+++EL +RIR LR+ Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 + +L+ +L L+ R+V G ++ LT KEY LL LM + R+ + ++ Sbjct: 130 SRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGC 189 Query: 182 DNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVA 218 D +N +EV+I LR K+ K I+TVRG GY+L Sbjct: 190 DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLRD 230 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 15/235 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++ED+ ++ + GY + Q ++ L++LD+ LP +G+ Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +RQ++ T P+L+LTA + + +AGLD GADDYLVKPF EL ARIR+LLRR+N Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 121 -----------NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 + L V +L L++ + G+ ++LT EY LL +M + Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 R + +++ D +T ++V+++ LR KV A I+TV G GYML E Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLKEEE 235 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 12/227 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL++ED + + + + Y + + L++LD+ LP DGL Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 +R K P+L+LTA+ + +D++ GL+ GADDYL KPF++ EL AR++A LRR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 119 ----HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 Q + L G L ++ +R++ +G +E+ LT KE+ LL + G RE L Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYML 216 + ++ + + +T+ HI+ LR K+ + TV G GY Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++IL+VED+ + L A EG+ D+V R A +++ G Y VVLD+ LP DG Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 AR+R+++ PVL+LTAR +TD+IAGLD GADDYL KPF L+EL AR+RAL RR Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G+L L+ +VW E+ L+ KE+ LL L+ + G R L ++ Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVAN 219 E +N ++V+I LRDK+ + + T+RG GY L + Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKD 245 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L+ + L YA + T + A + +EA Y L++ D+ LP DG+ Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + Y +P+L+LT +D+ D+ GLD GADDY+VKPF EEL AR+RALLRR Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L NL L+ +V L LTPKEYAL+ +M ++ I+ Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEE 221 +++ P + HI LR K+ I TV G GY L E Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKPLAE 226 Score = 93.6 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 10/152 (6%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +I+IV+DD +L+ + + G + ++L L++LD+ +P+ G+ Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 FLARIRQ--KKYTLPVLILTARDTLTDKI-AGLDVGADDYLVKPFALEELHARIRALLRR 118 +R + LP++ LTA T D + GADD++ KP EL RI L R Sbjct: 549 LCRVVRNDIQWEQLPIIFLTA-HTEADVVNQVYASGADDFISKPIVGPELVVRI--LNRL 605 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELIL 150 + + L T++ R + L Sbjct: 606 ERTRLQRRLS----TIDPLARVLSRHESTHAL 633 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VEDD +L++ L T Y D V M Y L++LD+ LP+ DG+ Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R R + YT+P+L+LTA+D +T K+ GLD GADDY+VKPF EL ARIRALLRR + Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N L G+L LN +V G L LT EY LL L+ E L + +++ Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANE 220 ++ PS T+ H+ LR K+ I T+ G GY L A Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKAPS 225 Score = 94.8 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 5/119 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K++I++DD L+ L + G+ ++ + L+A +VLD+ +P +G Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 FLARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 +R + LPVL L+ T + VG DDYL KP EL RI LRR Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRR 642 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L + A + E + D + +V+LD+ LP DG Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+K PVL+LTA + ++ GL++GADDYL KPF L EL AR++AL+RR Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +L+ G+L L+ R+V+ GG+E+ LT KEY +L LM+ V +E L +++ Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVAN 219 +D+ ++TL HI NLR K+ K I TVRG GY++ Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYVVRDE 233 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++EDD Q L + + G+ D G Y ++++D LP DGL Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R + PVLIL+A + D++ GL G DDYL KP+A EL AR+ AL RR Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + ++ + VG+L L+ +V GE ++L P+EY LL LM AG V R +L ++ Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 180 NWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANE 220 ++ +P TN ++VH+ LR K+ K + TVRG GY + Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTIRDGP 261 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 4/221 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++EDD +L + L G+ C T + + + +VLD+ LPD G+ Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +IR PVL+LTA ++ D++AGL+ GADDYLVKPFA EL AR+ A+ RR Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ S+L VG L L++ R+V EL LTP E++LL LM AG V R++L ++ Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 D E TN +EVHI+ LR K+ + I+TVRG GY+L Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVLR 221 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 88/226 (38%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L L+ ++ Y D V + + +++ Y LV+LD+ LP DG+ Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + +P+L+LTAR+ DK+ GLD GADDY+VKP + EL ARIRALLRR + Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L + L+ V G+ L LTPKEY LL LM + + + ++ Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEE 221 +D+ PS NT+ HI LR K+ G I TV G GY L N E Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQNLE 226 Score = 107 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 2/127 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +++IV+DD +L + Q G ++ R ++LE+ H L+VLD+ +P +G+ Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 FLARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 +R LPVL +TA+ + GADDYL KPF EL RI L+R Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616 Query: 120 NNQGESE 126 N Sbjct: 617 QNLATRT 623 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 3/224 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VED+ + L+ EGY + R+ L + + LV+LD LP EDG+ Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L R RQK T PVL LTARD +T+++ GLD GADDYL KPFA +EL AR+RALLRR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 L ++ ++ ++V GG L LT KE++LL + G + R +Y+ +++ Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 182 DNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYMLVANEEN 222 + +NTLEVH+ LR K+ G I+T+RG GY+L ++ Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACGPRVIQTLRGRGYVLETTSDD 227 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 130/225 (57%), Gaps = 4/225 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIVED+ +++ L +GY+C S + +V+LD+ LP DG Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R ++ LPVL+LTARD + K+ LD GADDYL KPFA EEL ARIRAL+RR + Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G+L L++ R+VW G ++ L+ +E+ALL LM + R+ + + +++ Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE 221 + +P +N ++V++ LR K+ + I TVRG GY E Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFDPPRE 225 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 79/215 (36%), Positives = 111/215 (51%), Gaps = 4/215 (1%) Query: 7 EDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFLARI 66 EDD L + + Y D T E Y L+++D LP DG+ ++ Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61 Query: 67 RQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQGESE 126 R + + P+++LTARD TD++AGLD GADDYLVKPF EEL ARIRALLRR Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIVSPV 121 Query: 127 LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWDNEPS 186 L G+L L+ +V G + LTPKEYALL + + L + ++ +++ P+ Sbjct: 122 LQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTPT 181 Query: 187 TNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLV 217 ++ HI LR K+ + I TV G GY L Sbjct: 182 VASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRLR 216 Score = 97.5 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 7/131 (5%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+V+DD+ +L L Q G+ + + Q+LE L++LD+ +P G Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 LARIRQKK--YTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI-----RAL 115 +R + LP+L ++A VGADDY+ KP EL AR+ R+ Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARSR 690 Query: 116 LRRHNNQGESE 126 RR + +S Sbjct: 691 DRRLRTEIDSL 701 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIV+D+ LL L EG+A D+ + Y +VLD+ LP +G Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F +R+++ P+L+LTA+D D+ LD GADD L KPF+ L ARIRALLRR+ Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G+LTL+ +V G + LT +E++ L L+ G + ++ + +++ Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVAN 219 +D E +N +EV+I LR K+ I T+RG GY L + Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEED 223 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDE--D 58 M+ILIVED+ L + + + EGYA D + Y +++D +P + D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 GL L ++R+ + P ++LTA + KI GLD GADDYL KPFA++EL AR+RA+LRR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + L VG L ++ R V +++ LT KEYALL LM +G + +E + + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVA 218 +N+D + NT+E +I LR K+ + I+TVRG GY L Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLEE 224 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 117/227 (51%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILIVEDD L L + YA + T A ++A Y L++LD+ LP DG+ Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR +P+L++T R++ +K GLD GADDYLVKPF +EEL ARIRALLRR Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L L+ + L LTPKE+ALL + + ++ +++ Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEEN 222 +++ P + HI LR K+ + TV G GY L EE+ Sbjct: 181 YEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLKPLEED 227 Score = 90.9 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+DD + L G ++ ++LEA +++LD+ LP +G+ Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 FLARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 +R + LP+L LT +GADD++ KP EL RI Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRI 509 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 18/236 (7%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+V+D+ + + L + GY + R A Q LV+LD+ LP+ DGL Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGL 58 Query: 61 HFLARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 +++ + +P+++LTA+ D++ GL++GADDY+VKPF++ EL AR++A+LRR Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 119 H---------NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 N + E L +G L L+ Q W+ + + LTPKEY LL L+ G Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKAR-----IRTVRGFGYMLVANE 220 R+ L I+ ++ T T++VHI +LR K+ I TVRG GY Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFARRP 234 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LI+ED+ L Q L + G+ D+ R + +G Y V+LD+ LP+ DG Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + ++R + + +PV++LTA+D++ D++ GL+ GADDYL KPF +EL AR+ AL+RR Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +Q S L G LTL+ R+ +G ++ L +E+ +L LM R+ + ++ Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANE 220 + + ++N ++VHI LRDK+ + TVRG GY + E Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYKVANPE 224 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 131/235 (55%), Gaps = 17/235 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ ++ L + GY + T A A ++ ++LDL LP DG+ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 ++RQ+K P++I+TA++ DK+ GL++GADDY+ KPF+ E+ ARI+A++RR Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 122 ------------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 + ++VG+L ++ + +V G+ + LTPKE+ LL + + G + Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVAN 219 R+ + N ++ +D T +++HI +LR+K+ IRTVRGFGY V + Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGD 239 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 127/225 (56%), Gaps = 4/225 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++++ED+ + + L + EG + R A Q +E LV+LDL LPD DG+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R+R LP++ILTAR + +++ GL +GADDY+VKPF+ +EL AR+ A+ RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 122 QGE-SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L V L+LN+ R+V + G + LTP E+ALL + M R+ L + ++ Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK---ARIRTVRGFGYMLVANEEN 222 + +N +EVHI NLR+K+G IRTV G GY L ++E Sbjct: 198 FTYVGDSNIVEVHISNLREKIGDHERKLIRTVYGVGYTLRPDDET 242 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+++DD + L A EGY + + L++LD+ LP DG Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R R+ + P+LIL+ARD + K+ GL++GADDYL KPFALEEL AR++ALLRR Sbjct: 64 ICQRFRKDNF-TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR-RI 121 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 + +L +++ R+V G L LT +E+ LL+ M + RE + + ++ Sbjct: 122 TANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL 181 Query: 182 DNEPSTNTLEVHIHNLRDKVGK---ARIRTVRGFGYMLVAN 219 D +N LEV+I+ LR K+ I TVRG GY+L Sbjct: 182 DFTGGSNVLEVYINMLRQKIEDYGSRIIHTVRGVGYVLKEQ 222 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 315 bits (808), Expect = 8e-85, Method: Composition-based stats. Identities = 89/217 (41%), Positives = 129/217 (59%), Gaps = 1/217 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L + L+ + E YA D+ Q Y ++VLD+ LP G Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 FL ++R K + PVL+LTARD + D++ GL+ GADDYL KPF +EEL ARIRAL+RR Sbjct: 72 EFLQKLRPTKTS-PVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q + L + +L+++ R+V GEE+ +T +EY L+ L L G V R LY +++ Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLV 217 D+ +N L+VH+ NLR K+ I T RG GY + Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLAPELITTRRGHGYSIE 227 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 6/222 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ + L+ Q E Y + + + A ++ + LV+LD+ +P+ DGL Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 RIR+ +P+++LTAR D+I GL +GADDY+ KPF+ EL ARI A LRR + Sbjct: 67 ACMRIREFSN-VPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 122 ---QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + L +G L L+ R V + G+ + LT KE+ LL + RE L + I Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLVA 218 + D + T++ HI LR K+G+A I+TV G GY Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGSIQTVWGIGYKFEE 227 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD +L L+ + Q + Y D+ R + E+ Y L+++D+GLP DG+ Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R + YT P+L++TA+D +KI GLD GADDYL KP + ELHAR+RALLRR Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L +G L L+ +V L LTPKEY+LL + R + ++ Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVAN 219 +D+ P ++++ H+ LR ++ +A I V G GY L Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKLSPK 223 Score = 86.7 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 8/124 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L V+DD +LL L + G++ ++ + Q+L L++LD+ +P DG+ Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 LARIRQKKYT------LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 +R LP+L LTAR+ ++ DDY+VKP EL RI L Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNRL 520 Query: 117 RRHN 120 R Sbjct: 521 ERAR 524 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VED+ + + + E Y +V + A + H+ LV+LDL LP G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 IR +P+++LTA+ + D+I GL++GADDYLVKPF+ EL AR+RALLRR + Sbjct: 70 VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 122 QGES---ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 E L G LT+++ +V +GG+E+ LT E+ LL+ L G R L + Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 +D E T++ H+ NLR K+G + TV G GY + Sbjct: 189 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTKQ 237 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+ ED+ LL+ L EG++ + A +G + ++LD+ LP DG Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R K +P+L+LTARD +D I GLD GADDY+ KPF+ EL AR+RA+ RR Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L+ +LTL+ +V+ G + LT E+ LL +LM AG PV R+ L +++ Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGY---MLVANEE 221 +D NTL+ I LR KV I+TVRGFGY L +++ Sbjct: 181 YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGYSARKLSGDDQ 228 >UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax=Proteobacteria RepID=QSEB_ECOLI Length = 219 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 100/219 (45%), Positives = 137/219 (62%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD L+ G+ G++ D T R +++L + Y V+LDL LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+K PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR N Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q +EL GN+ L+ G+R + GE L L PKE+ALL LM AG + R+++ +Y Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 WD E ++N +EVH+H+LR K+G IRTV G GY L Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 13/232 (5%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +++LI +D+ + L + E Y D+ A + Y+LV+LDL +P DG+ Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 R+R +P+L+LTA+D DKI GL +GADDY+ KPF++ E+ ARI+AL+RR Sbjct: 64 EVCRRLRN-NTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 119 -----HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 N Q ++ L LT+++ + V +G +E+ LT KE LL + Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANE 220 L+ ++++ + NT+ VHI LR K+ I+TV G GY V + Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEK 234 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 7/222 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +L+VED+ L L + EGY+ A E LV++D LP G+ Sbjct: 4 HVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIE 63 Query: 62 FLARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR- 118 R+R ++ T +P+++LTAR TD++ GLD GADDY+VKPF++ EL ARIRA+LRR Sbjct: 64 VCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRI 123 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 E + G++T++ +V E+ L P E+ LL LM G RE L + + Sbjct: 124 RPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183 Query: 179 YNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 + D T++VH+ LR + + IRTVR GY Sbjct: 184 WGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAF 225 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 10/228 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++ED+ + + EG+ + V Q ++ L++LD+ LP DG+ Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +IR+ T+P+++LTA+DT +D++ G ++GADDY+ KPF+ L ARI+A++RR+ Sbjct: 61 TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 121 NQGESEL-----IVGNLTLNMGRRQVWMGGEELI-LTPKEYALLSRLMLKAGSPVHREIL 174 G++ + T+N R+V + GE + LTPKE+ LL L+ RE L Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYMLVAN 219 ++ + T++VHI LR K+ K + TV G GY + Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLASEDKPFLYTVWGVGYKFDED 227 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+V+DD L Q L + + Y D T +E+ YSLV+LD+ LP +G+ Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R Y +PVL+LTARD+ DK+ GLD GADDYLVKP EEL AR+RALLRR Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + G+LTLN + ++ L LTPKEY L+ + + + +++ Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEE 221 + + NT+ HI +LR+K+ I V G GY + + ++ Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIKSLDD 226 Score = 88.6 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%) Query: 8 DDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFLARIR 67 DD +L+ L G ++ T R Q LE + L+++D+ +P +G+ IR Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552 Query: 68 QKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + LP+L+LT + GADD++ KP EL AR+ + L R Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSR 607 Score = 40.5 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60 +LIV+ DT+L + +I A + G +A + S+++L+L P EDGL Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP 102 L I +PV+I + R + D++ +G+ +L KP Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKP 465 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDD + L A G++ D E G Y ++V+D LP DGL Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +A +R + PVLIL+A + D++ GL G DDYL KP+A EL AR+ L RR + Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 121 NQGESEL-IVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + + VG+L L+ ++ L P+E+ LL LM AG V R +L +++ Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 ++ +P TN ++VHI LR K+ K + TVRG GYML A Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLKAG 244 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 9/228 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ + + + GY V+ + L+ L+VLDL LP DG+ Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 +R++ +P+++LTA +TDKIAGLD GADDY+ KPF+ +EL +RI+A+ RR Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + +G LT+ +R+V + G + LTPKE+ LL L G + R+ L + Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANE 220 ++++ T ++VHI +LRDK+ I TVR GY L A Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAPN 231 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 121/230 (52%), Gaps = 11/230 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+V+DD +L+ L + EGY+ + A +V+LD+ LP DG Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 IR+ +P+++LTARD D+I GL++GADDY++KPF+ +E+ AR+RA+ RR Sbjct: 61 GVCKEIRRTS-DVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ 119 Query: 121 NQ-----GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 GE L VG+ L+ R + + G + LTP EY LL + G R L Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANE 220 + ++ E T++ HI NLR K+G I+T+ G GY LV + Sbjct: 180 EKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGEQ 229 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 4 LIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFL 63 L+VEDD+ + + + + + E +A D + + Y+L++LDL LP DG Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 ARIR--QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN- 120 R+R + P+++LTA++ +DK+ GL VGADDYL KPF E AR+ ALLRR Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 121 -NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 NQ + L LT+ Q ++ + + LTPKE+ LL L AG + RE L ++ Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 180 NWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 ++ ST T++ HI LR K+ G ++TV G GY L E + Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVKEND 236 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 114/223 (51%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+V+DD L L Y D V Y LVVLD LP G+ Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 H R+R++ +P+L+LT ++ +KI GL+ GADDY+VKPF ++EL ARIR LLRR Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ E LI GNL L+ QV G+ + LT KEY+LL + +L +++ Sbjct: 121 HETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVA 218 PS T+ H+ LR K+ I TV G GY L + Sbjct: 181 SQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLKS 223 Score = 78.6 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 10/128 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KI+IV+DD L+ ++ + +T + LVV D+ +P +G Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 FLARIRQKK--YTLPVLILTARDTLTDKIAGLDVGADDYLVKP-----FALEELHARIR- 113 +R LP++ L+ + +GADDY+ KP FA L R+ Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR-LLNRLNQ 628 Query: 114 -ALLRRHN 120 A +RR Sbjct: 629 TADIRRPA 636 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 121/226 (53%), Gaps = 11/226 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+V+D+ ++++GL + + D A + + Y +++LD+ LP DGL Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN- 120 +IR+ +P+++LTA+ DKI GLD GADDY+ KPF + E+ AR++A+LRR++ Sbjct: 73 VCQQIREFSN-VPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 121 ----NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 Q + + G++ ++ R +++ +E+ LT KE+ LL L + G R+ L Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLV 217 ++ D T++VH+ LR+K+ + T G GY Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFN 237 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 122/235 (51%), Gaps = 16/235 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I++V+D+ + + L+ + G+ ++ + A + +E L+VLD+ LPD DG Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 RIRQ+ PVL LTARD DK+ GL VG DDY+ KPF+LEE+ ARIRA+LRR Q Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 123 --GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + VG+L +N V G+ + L+P EY LL LM G + + + + ++ Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 181 WDNEPSTNTLEVHIHNLRDKVG--------------KARIRTVRGFGYMLVANEE 221 +D +E +I LR KV I T RG GYM+ A + Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRAPKN 248 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 9/227 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++IL+V+DD + + L + GY + A + + + +VLD+ +P DGL Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGL 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R LP+L+LTARD++++++AGLD GADDYL KPFALEEL AR+RALLRR Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 121 NQGES-----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 + + + +L+L+ R+V G + LT E+ALL L+ + R + Sbjct: 123 LEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVA 218 +++ +D S N LEV++ LR K I TVRG GY+L Sbjct: 183 EEVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLRE 229 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 124/228 (54%), Gaps = 10/228 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 IL+V+D+ L++GL L+ + EG+ + + R A AG + L+VLDL LP DGL Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 +R P+++LTA+ DKI GL++GADDY+ KPF EL ARIRA+LRR Sbjct: 63 ICREVRAAGM-TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 L+VG+L L+ +R+ + G L LT +EY LL L G R+ L + Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANE 220 ++ +D T++VH+ +R+K+ + +RT G GY L A Sbjct: 182 VWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAEP 229 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD + L A G+ D + Y +++D+ LP DGL Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R + PVLIL+A+ +++D+++GL++G DDYL KPF L EL AR+ +L+RR Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 NQGESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 E+ L G+L L++ R+V+ G EE L P+E+ALL LM G V R + +++ Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 ++ P+TN +EVHI LR+K+ ++T R GY LV + Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYALVEDS 256 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 105/219 (47%), Positives = 139/219 (63%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L +G+ + EGY D + +L+ + LV+LDLGLP DGL Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R +LPVLILTARD L D+IAGLD GADDYLVKPF L EL AR+RALLRR Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + ++L+ +QV G E++LTPKEY LL L+ + G RE L +Y Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 WD EP +NTLEV+I++LR K+ IRTVRG GY++ Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLVEVK 219 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+VEDD ++ L L EGY + A + + LV+LD+ LP++DG Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 IR+ +P+++LTA+D DK+ GL +GADDY+ KPF +EL ARI A+LRR+ + Sbjct: 63 VCKEIRKISN-VPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 122 --QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 +++ +++ +R V + G+E+ L+ +E+ +L L+ G R+++ I+ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 + ++V+I LR+KV I TVR GY E+ Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNED 229 >UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged helix family n=9 Tax=Proteobacteria RepID=Q3SMF6_THIDA Length = 220 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 97/219 (44%), Positives = 134/219 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD LL GL G+A D + A +L ++ VVLDLGLP DGL Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + PVL+LTARD L DK+ GLD+GADDY++KPF L+E+ AR+RAL+RR + Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +G++ L+ R V G+ + LT +E+ LL L+ +G + R +L +Y Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 WD +N LEVH+H+LR K+G IRTVRG GYM Sbjct: 181 WDEGVGSNALEVHVHHLRRKLGNDVIRTVRGVGYMAAPP 219 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 124/244 (50%), Gaps = 25/244 (10%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VED+ + + + EGY + VT A Y L++LDL LP DGL Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 FLARIR-QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR-RH 119 +IR +PV++LTA+ +KI GL++GADDY+ KPF+ EL AR++A LR R Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 120 NN------------------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRL 161 + E G L++ + + ++ +EL LTPKE+ LL+ + Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 162 MLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYML 216 + +G + RE L I+ +D T T++VHI +LR K+ + TVRG GY L Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242 Query: 217 VANE 220 E Sbjct: 243 KEME 246 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 126/222 (56%), Gaps = 4/222 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILIVED+ + + ++ G+ T A A G + L++LDLGLP +DGL Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L ++R + +LP++ILTARD + DKIA + GADDYL KPF EEL R++A LR + Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 122 ----QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Q ES L N+ L++ R+V +G L L+ +E+ L G + RE L + Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 ++ +D +P +N ++V++ LR K+G I TVRG GY L Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGNELIETVRGMGYRLKLP 224 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L++ED+ + + + L EGYA + + LV+LDL LP DGL Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 RIR+ P++ILTA+D + DK+ GLD GADDYL+KPF++EEL AR+RA LRR N Sbjct: 67 ARRIRKTSN-TPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 E+ V +L +N+ R+++ GG + L+ KE+ LL L G R + ++ + Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-PE 184 Query: 183 NEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 +N ++V+I LR K+ + I TVRG GY+L Sbjct: 185 YTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVLREE 225 >UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=B6J7N7_COXB1 Length = 232 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 134/223 (60%), Gaps = 2/223 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEA--GHYSLVVLDLGLPDED 58 M++L+VEDD L G+ + G+ D V + A L + + +++LDLGLP Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR 118 GL L IR+K PV+ILTARDT+ D+I GLD G+DDY+ KPF LEEL AR+RA+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + + G++TL+ V +E++++ +E+ALL +L+ AG + RE L + Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 Y W +N LEVHIHNLR + G IRT+RG GYM+ + Sbjct: 190 YGWGENIDSNALEVHIHNLRKRFGAKLIRTIRGVGYMVEKKSK 232 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 95/227 (41%), Positives = 130/227 (57%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++EDD + + + + Y + A LEA + L++LDLGLP DGL Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F IRQ+ ++LP+LILTARDT +DK+ GLD GADDY+VKPF L EL AR+RALLRR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L L+ R +V +EL LTPKEYA+L L+ + R + + + Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 D P T++VH+ +LR K+ I TV GFGY L N ++ Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLNPNFQS 227 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 123/227 (54%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L++ED+ L L+ + +GYA D + Y L++LDL LP DGL Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R L +LILTARD +++ GLD GADDYL+KPF EL ARIRALLRR Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L +L L+ + VW+ + L LT KE+A+LS LM G + +E+L +++ Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEEN 222 P TNT+ VHI+ LR K+ I TV G GY L E+ Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRLGNAGES 227 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 110/233 (47%), Gaps = 13/233 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIVED+ + + + E Y + L++LDL +P +DG Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 IRQ+ +P+++LTA+ D+I GL +GADDYL KPF+ EL R++ +LRR N Sbjct: 63 LCGEIRQQSN-VPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 122 QG-------ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 + +L + R V + E+ LT KE+ +L + R L Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANEEN 222 I+++ +E ++NT+ V + LR+K+ K I TV G GY N N Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGRN 234 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD L L Y D + Q + +Y L +LD+ +P DG+ Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + P+++LTA+D+ +D+I GLD GADDY++KP LE L ARIRALLRR N Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S + GNL LN+ +V E + LT KEYALL ++ +R ++ +++ Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANEE 221 P T+ HI LR K+ I TV G GY L +E Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRLRKADE 225 Score = 66.7 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 26 ACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFLARIRQKK--YTLPVLILTARDT 83 + + L H +L+VLDL +P +GL +RQ LP+L L+ Sbjct: 543 EVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIYTD 602 Query: 84 LTDKIAGLDVGADDYLVK 101 GADDY+ K Sbjct: 603 EEMIQQMFAAGADDYISK 620 Score = 65.5 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGL--PDEDGL 60 IL+++DD L + + + AQT + T +A Q + ++++LDL EDG Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP 102 L + Q + LP++I T R++L D+I +GA +L KP Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 495 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 13/234 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+V+D+ +L+ L EG+ + VT R A E Y +VLD+ LP DG+ Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH-- 119 R+R K P+++++A+ DK+ L++GADDY+ KPF+ EL AR++A+LRR Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 120 ------NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 E + L L R +V+ E L LTPKEY LL LM + RE Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 L I+ +D T ++VHI LR+K+ I+T+RG+GY + + Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKND 244 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 309 bits (794), Expect = 3e-83, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 15/234 (6%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ + + L + + E YA D A +Y L++LDL +P DG+ Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +IR+KK P+++LTA+ +++ G + G DDY+VKPF+ E+ R++ALLRR + Sbjct: 68 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 QG--------ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 ++ L+ +L+++ +V G E+ LTPKEY LL L RE Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKVGK------ARIRTVRGFGYMLVANEE 221 L +++ ++ T++ H+ LR+K+ K +I TV G GY E Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 129/224 (57%), Gaps = 9/224 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M ILIV+DD+ LL L A + + Y ++ A + Y L++LD+ LP DGL Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ PVL+LTAR + D++ GLD GADDYL KPF++ EL ARIRALLRR + Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR-D 124 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + ++ L G L+LN R V + + LT KE+++L L+ GS V R + ++ Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184 Query: 181 WDNEPS--TNTLEVHIHNLRDKVG------KARIRTVRGFGYML 216 + +P +N ++VHI NLR K+ IRT+RG G+++ Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFII 228 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 309 bits (793), Expect = 4e-83, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 8/227 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +++L+V+D+ + + +A + EG+ ++V + + A + L+VLD+ L D DG Sbjct: 79 VRVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGF 138 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R + +P L LTARDT DK+ GL +G DDY+ KPF++ EL AR+RA+LRR Sbjct: 139 AVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAG 198 Query: 121 NQG-----ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 + + L +L L+ R+V G + LT EY LL L+ A + + R L Sbjct: 199 SPVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLL 258 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLVAN 219 + ++ D LE +I LR KV I TVRG GY+L Sbjct: 259 DHVWGHDFSGEGGVLETYISYLRRKVDNVEPPLIHTVRGVGYVLRLP 305 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++ED+ ++ + + G+ + Q + + +++LDL +P +G+ Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R R + T P+L+LTA T + ++GLD GADDY+ KPF L EL AR+R L+RR Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 121 NQGES----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 + L +G+L L+ + V GG+ + LT E+ LL L+ ++R + Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANEEN 222 ++++ + TN ++V+I+ LR K+ K I TV G GY++ + E+ Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGYVIRQSYED 230 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ L + + + G+ + Y +VLDL LP G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R P+LILTAR + GL++GADDYL KPF+ + L AR+ ALLRR Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L+VG+L L+ RR V G + LT +E+++L LM AGS + + + ++ Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVANE 220 D + N +EV++ LR K+ + IRTVRG GY++ + Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLMGDED 224 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 9/225 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+V+D+ ++ + +A + G+ + T + A A L++LD+ LPD DG Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R+R + V+ LTARD DKI GL G DDY+ KPFA+EEL AR+RA+LRR Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 122 QGES------ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 L ++ L+ V + + L+P E++LL + + R + Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYMLV 217 +++ D + ++ ++ LR K+ G I T RGFGY L Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQHGPPLIHTQRGFGYALR 246 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 12/228 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+LI+EDD + + + G CD + + +Y +++LD+ LP DGL Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R+R+ +P+L+LT+R DK+ L+ GADDY+ KPF++ EL AR+ A +RR+ Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 122 QGES-------ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 + E + L L+ +V + +E+ +T KE+ LLS M G R L Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLV 217 + ++ +T+ HI+ LR K+ I TV G GY Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFN 232 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 9/224 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL++EDD + + L + + EG+ + + G Y +++LD+ LP G+ Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 RIR+ +P+++LTA+D ++DK+ G D GADDY+ KPF+ EEL ARI+ALLRR Sbjct: 64 VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 QG--ESELIVGNLTLNMGRRQVWMG--GEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + +LT+N +V+ + L+ +E+ LL L+L G + R+ + + Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLV 217 ++ +D + N L+++I LRDK+ + I+TVRG G++ Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 119/235 (50%), Gaps = 15/235 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEA-----GHYS---LVVLDL 52 M IL+VEDDT + L + EGY ++ +++LDL Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 GLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 LP G+ +R PVL+LTA + D++ GL GADDYLVKPF+ EEL ARI Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 113 RALLRRHNNQGES---ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 ALLRR +Q L GN+ L+ +V GEE++LT +E ALL + G + Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANE 220 RE + ++++ D +P TN ++V++ LR K+ I TVRG GY L + Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLEPDP 235 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+LIVED+ LL L + A + ++ ++ +VVLD+ LPD +G+ Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+R K +P+L+LTA T + + GL+ GADDYLVKPF EL AR+ AL RR + Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 121 NQGE--SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + + +G+L +N + V GE +ILT KE+ LL L AG V R+ + +++ Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 ++ + + +TN ++V+I LR KV K I T++G GY++ Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVIKP 224 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 123/220 (55%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +K+++VEDD L + L + + GY+ S + A + + + LV+LD+ LPD DG Sbjct: 5 VKLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGY 64 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R+ K + +L+LTA DK+AG + GADDYL KPF EEL ARI+ALLRR N Sbjct: 65 EVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKN 124 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + G+L + +R V G+ + L+ E+ LL L V +E + + ++ Sbjct: 125 ISISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWG 184 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANE 220 D S NT+EV+++ +R K+ I+T+RG GY LV + Sbjct: 185 IDYYGSDNTVEVYVNYIRKKLSPELIKTIRGVGYKLVGEK 224 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 81/220 (36%), Positives = 129/220 (58%), Gaps = 5/220 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VED+ L + L L + EG++ D + Y L++LD+ LP+ G+ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 RIR+ K +P++++TAR + D + GLD GA+DYL KPFA+EEL ARIR LLR+ ++ Sbjct: 73 CRRIRETK-DVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 E++VG L + R+V++ EE++LTP+E+ LL ++ V RE + ++ +D Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191 Query: 183 NEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVA 218 +TN ++V+I LR+K+ I TVRG GY L Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTLRD 231 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 131/227 (57%), Gaps = 10/227 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++I IVED+ + + L + + EG+ + A + + G++ LV+LD+ LP DG+ Sbjct: 5 VRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGM 64 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 R+R+ +LP+++LTA+D + DK+AGLD+GADDY+ KPFA+EEL ARIR LR+H Sbjct: 65 TICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHV 123 Query: 120 ----NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 E L V NL + R +V + GE + LT KEY+LL +M + + R+ + Sbjct: 124 PDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQIL 183 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVA 218 ++ +D TN ++V+I LR K+ I TVRG GY + Sbjct: 184 EKVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGYAVKE 230 >UniRef50_C7MME5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MME5_CRYCD Length = 226 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L + L + Y D V ++G Y VLD+ LP DG Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 A++R++ LP+L+LTAR + DK+ GLD GADDY+ KPFA EL ARIR+L RR Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L ++TL++ ++ G+ + L+ KE+ ++ LM + ++ L + ++ Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANEE 221 +D+ + N +E ++ LR K+ I T+RG GY L + Sbjct: 181 YDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGYRLGTQAD 225 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 120/234 (51%), Gaps = 16/234 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I++V+D+ + + L+ + G+ ++ + A + +E + +L+V+D+ LPD DG Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 RIRQ +PVL LTARD DKI GL VG DDY+ KPF+LEE+ ARIRA+LRR Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 GESE--LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E + V +L +N V G + L+P EY LL LM G + + + N ++ Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK--------------ARIRTVRGFGYMLVANE 220 +D +E +I LR K+ I T RG GYM+ + Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIREPK 242 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +K+L+V+D+ + + ++ + +G+ ++ + A + E +LD+ +P DG Sbjct: 30 VKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGF 89 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R+ + P L LTA+D + D+I GL +GADDY+ KPF+LEE+ R+R +LRR Sbjct: 90 TLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVA 149 Query: 121 N---QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + S + ++TL+ +V GE + L+P E+ LL LM+ A + + + + Sbjct: 150 KDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDH 209 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLVAN 219 ++N+D N +E ++ LR K+ I TVRG GY+L Sbjct: 210 VWNYDFGGDGNVVESYVSYLRRKIDTKEPRLIHTVRGVGYVLRKP 254 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 8/226 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VED+ + + + G+ D RM + + +Y LV+LDL LP +G Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 IR+K +P+++LTA + DK+ ++GADDYLVKPF EL ARIR L+R + Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 122 QGES----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + + ++++G+L ++ +++V GG+++ LT KEY LL L L G + + ++ Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVAN 219 +++ D + TN +EV+++ LR K+ K + T G GY L Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYLAEE 266 >UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax=Gammaproteobacteria RepID=QSEB_SALTI Length = 219 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 101/216 (46%), Positives = 137/216 (63%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDDTL+ G+ G++ D T R +++L + Y V+LDL LP DG Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+K PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR + Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q SEL G +TLN G + GE L L PKE+ALL L+ G + R+++ +YN Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 WD++ S+N +EVH+H+LR K+G IRTV G GY L Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTL 216 >UniRef50_Q2RPG3 Two component transcriptional regulator, winged helix family n=8 Tax=Alphaproteobacteria RepID=Q2RPG3_RHORT Length = 229 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 124/220 (56%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L L + G+A D A E + VVLDLGLP DG+ Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R +PVLILTAR +K+AG + GADDY+ KPF +EE+ R++AL+RR Sbjct: 61 GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +EL+ G L L+ + + G L LT +EY +L+ L+L+ G V R + + +Y+ Sbjct: 121 GHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANE 220 D++ +N ++V + LR K+G I TVRG GY L A Sbjct: 181 RDSDRDSNVIDVLVGRLRRKLGAPLIHTVRGLGYRLEAES 220 >UniRef50_P30843 Transcriptional regulatory protein basR n=126 Tax=Gammaproteobacteria RepID=BASR_ECOLI Length = 222 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 222/222 (100%), Positives = 222/222 (100%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 123/232 (53%), Gaps = 18/232 (7%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSL----------EAGHYSLVVLDL 52 IL++ED+ L+ + ++LA Q EGY + A + E G L++LD+ Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 53 GLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 LP +GL IR++ T+P+L+++A+ + D++ GL++GADDYL KPF + E+ AR Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143 Query: 113 RALLRRHNNQG---ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 RALLRR Q L +L L + + GEEL L+PKEY LL M Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYML 216 RE L + ++ D + T++VHI LR+K+ I TVRGFGY Sbjct: 204 PREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+V+DD L+ L + Y D T AE+ + Y ++LD+GLPD +G+ Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+RQ+K T P+L+LTA D K+ L+ GADDY+VKPF EEL ARIRAL RR N Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N + L G+L ++ +V+ L +TPKEY +L + + + +++++ Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVA 218 +++ PS + + H+ LR K+ K I+TV G GY L A Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLKA 249 Score = 82.5 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 2/128 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K++ ++DD +L L G+ ++ A +LE+ L+++D+ +P+ +GL Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572 Query: 62 FLARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 +R + LP+L L+ D + +VGADD++ K EL R+ L+R Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRT 632 Query: 120 NNQGESEL 127 + L Sbjct: 633 GRAVPALL 640 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 117/234 (50%), Gaps = 15/234 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 ILIV+D+ + + L + + E + + + A + +Y+ ++LDL LP+ DG+ Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN-- 120 ++R+ P+++LTA+ T+++ G + GADDY+VKPF+ E+ R++ALLRR Sbjct: 65 ATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 121 ------NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 + +L ++ +V +E+ LTPKEY LL L RE L Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKV------GKARIRTVRGFGYMLVANEEN 222 ++++++ T++ H+ LR+K+ I+TV G GY + Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSND 237 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 98/214 (45%), Positives = 137/214 (64%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L L + ++EGYA + TA A +L G +++++LDLGLPD DGL Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + + K+++P LILTARD++TDKI GLD GADDYL KPF ++EL AR+R + RR Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S + +GN+ L++ QV E L+ +E+ LL LM AG + L +Y Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGY 214 W +E S+N +EVHIHNLR K+ K I+T+RG GY Sbjct: 181 WGDELSSNAIEVHIHNLRKKLPKDFIKTIRGVGY 214 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 136/225 (60%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+VED+ +L + + + GYA D+ + A + E Y L++LDL LP DG+ Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +IR + + +LIL+AR + DKI GLD GA+DYL+KPF +EL ARIR LLRR Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +Q + + N+TL+ ++ V + GE + +T KEYA+L LML + E L +++ Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVANE 220 + + +N+L+ HIH+LR K+ I+T+RG GY++ N+ Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITEND 225 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ L Q ++ + Y D + A +Y L++LD+ LP D + Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 R+RQ T P+++L+A T D +AGLD GADDY++KP +E L AR+RALLRR+ Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L GNL ++ +V G+ L L+PKEY LL LM ++ + ++ Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVA 218 + + P+ T++ H+ LR K+ K I TV GFGY L Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRLKD 222 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILI++DD + + EGY + + L++LD+ +PD DGL Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--H 119 R+R K +P+L++T D++ D++ GL+ GADDYLVKPFA EEL AR++ALLRR H Sbjct: 64 VCKRLR-KDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + + +LI +L +++ RQ + G + + E+ LL M + RE+L + ++ Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 180 NWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVA 218 +D +N LEV++ LR K+ I TVRG GY+L Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVLRE 225 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L Q L Q Y+ D + + Y ++D+GLP DG+ Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R+++ + P+L+LTARD+ DK++GLD GADDYL KPF EEL AR++AL+RR Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + S + G ++N+ +V + L+ EY L LML G + +L IY+ Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVA 218 D + +N +EV I LR K+ I T+RG GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRLNP 222 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ + L G+ D E Y +++LD+ LP DG Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + IR K PVL LTA D + D++ G ++GADDYLVKPFA EL ARIR LR+ Sbjct: 61 TVIKSIRSKS-ETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ L + +L +++ R+V+ G + LT +E++LL LM + G + R + + ++ Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWG 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVAN 219 + + TN ++V I LR KV I TVRG GY+L Sbjct: 180 VNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLDPE 222 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 14/231 (6%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSL-EAGHYSLVVLDLGLPDEDGL 60 ++LIVEDD + + EG ++V A + L ++ + LV+LD+ LP DG+ Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 HFLARIRQKK---YTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 +R+ T+PV++LTARD T + GL+VGADDY+ KPF+ +L +R+RA LR Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 118 RHNNQGES-----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHRE 172 R ++ +L L +++ RR+V GE++ LT +E+ +L+ L G RE Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 173 ILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVA 218 + + ++ + + +VHI +LR K+ I+TVRG GY Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 117/226 (51%), Gaps = 4/226 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L + L Y D + Y ++D+GLP DG+ Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +AR+R++ P+LILTARD DK+ GLD GADDYL KPF EEL AR++AL+RR Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + G +LN ++ G +++ L+ EY L ML G + IL IY+ Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANEEN 222 D + +N +EV I LR K+ I T+RG GY L + + Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRLKPLDNS 226 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 15/234 (6%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIV+DD + + + L E + V A +L++LDL LP DG Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 +R+ T+P+++L+A+ + DK+ GL++GADDY++KPF +EL AR++A+LRR Sbjct: 66 VCREVRKTS-TIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 119 HNNQGESELI--------VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVH 170 + E + +L +N V G+ + + PKE L L Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184 Query: 171 REILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKA---RIRTVRGFGYMLVANEE 221 RE L + I+ ++ T T++VHI LR+K+ R+ TV G GY + Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWRLSTVWGIGYKFEVKKN 238 >UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammaproteobacteria RepID=A0KN62_AERHH Length = 229 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 98/221 (44%), Positives = 143/221 (64%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD +L G++ A ++ GY D + A L++ ++ ++LDL LPD DG+ Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R++ TLPVLILTARD L D++ GLD G+DDY+VKPFAL+EL+AR+RAL+RR Sbjct: 61 SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q ++ L G L L +QV GE + LTP EY LL L+ ++G + ++ L +Y Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 WD +N +EVHIH+LR K IR +RG GY++ E+ Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYSDLIRNIRGVGYIVPQLEQ 221 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 124/235 (52%), Gaps = 13/235 (5%) Query: 1 MK-ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDG 59 MK IL+V+D+ +L L + E + + T A + ++LDL LP DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 + +IR+ K P++ILTA+D TDKI GL+VGADDY+ KPF+ E+ ARIRA+ RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 NN-------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHRE 172 Q ++VG+L+++ G +L LTPKE+ LL M + RE Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 173 ILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 L N ++ +D T +++ + +LR+K+ ++TVRGFGY L + Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPAHD 235 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+ ED+ + + + G++ + L+ + LV+LD+ +P +GL Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 FLARIRQK-KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 RQ Y PV++LTA T D + GLD GADDYLVKPF+ +EL ARI+ALLRR+ Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++L NL L+ R+ G ++ LT KEY LL M G + R L D+++ Sbjct: 144 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 203 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 + + +TN ++V+++ LR K+ + I TV G GY++ A Sbjct: 204 KNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMNA 245 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 305 bits (782), Expect = 8e-82, Method: Composition-based stats. Identities = 84/219 (38%), Positives = 123/219 (56%), Gaps = 12/219 (5%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 ILIVED+ L + L L E Y D+ + + +Y L++LDL LP +GL Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEI 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 +IRQ+ + P++I+TA+ DK+AGLD GADDY+VKPF +EEL ARIRA+LRR Sbjct: 64 CRKIRQQ-QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--QP 120 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 + + V L +V + G E+ LT EY LL L + RE + N ++ ++ Sbjct: 121 QKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYN 175 Query: 183 NEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLV 217 +E TN ++V+I LR+K+ I TVRG GY++ Sbjct: 176 SEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVIR 214 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 305 bits (782), Expect = 8e-82, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 9/224 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL V+DD +L+ L + EG+ + ++ A Q LV+LDL +P DG Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +++ ++ +P++IL+AR D++ G +G DDY KPF+ EL R++A+LRR Sbjct: 64 TYQKLKAQR-EVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122 Query: 122 QG---ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 E+ L GNLTL+ +R V + ++ LTPK++ LL + + L + I Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLV 217 ++ NT+ VHI LR+KV I+TV G GY Sbjct: 183 WDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDDT + + LI Q EG T + Y ++VLD+ LP +DG Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA++R + + PVLIL+A+ ++ +++ GL GADDYLVKPFA EL AR ++L RR Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 121 NQGES--ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 +L L+L++ + + G + L +E+ L+ ++ + + + + + Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 + +P TN ++V + LR KV K I T+RG GY+L + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVLKSQ 225 >UniRef50_Q97LA9 Response regulator (CheY-like receiver domain and HTH DNA binding domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LA9_CLOAB Length = 221 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +LIVEDD L L + CD +LE Y V+LD+ LP DG+ Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R K + PVL+LTAR D++ GLD GADDYL KPF +EL AR+ AL+RR+ Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N+ +E+ + +L ++ + V +G + + LT +EY +L L + V E + ++ Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 ++ +N + VHI NLR K+ G+ I T++G GY L Sbjct: 181 DNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGYRL 220 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 1/215 (0%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILIV+D+ + L + EGY + + LV+LD+ LP +DG Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L I +K PV++LTARD D++ G ++GADDY+ KPF + L AR+++LLR+ NN Sbjct: 68 ILREI-KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 ES + +G+L +N V E+ L PKEY LL L+ + RE L N+++ + Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWGY 186 Query: 182 DNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 D T++ HI NLR K+GK I+T+RG GY L Sbjct: 187 DFLGDDRTIDTHIKNLRKKIGKNAIKTIRGIGYKL 221 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +LIV+D+ + + + + ++ A Q L+ ++++D+ +P DG Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--HN 120 ARIR++ +P+L LTAR DK+ GL +G DDY+VKPF+ EL ARI A++RR HN Sbjct: 66 CARIREQS-DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q +L G L ++ R+V + G+ ++LT KE+ LL L G RE L ++ Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK--ARIRTVRGFGYMLVAN 219 +D + T++ HI LR K+ + I+TV G GY + Sbjct: 185 YDYTGNARTVDTHIKTLRMKLKQASDFIQTVWGIGYKFEVS 225 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 9/225 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+ED+ L L EG T + + + ++LD+ LPD DG Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 AR+R++ T+P++++TARD + D+I GL GADDYL KPFA EEL AR+ A+ RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 119 ----HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 Q + + VG+L + + G + LT KE +L LM G+ + R + Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDK---VGKARIRTVRGFGYML 216 ++ +++P TN +EV++ LR K +G + VRGFGY L Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALGPPVVENVRGFGYRL 225 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 125/222 (56%), Gaps = 1/222 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ L L Q +GYA D + R A ++ Y L++LDLGLP GL Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA+ R PVLILTAR + ++I GL GADDYL KPF EEL RI+ALLRR Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + +L L L+ R+ V G ++ LT E+ LL ML + + L +Y Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 + + E +N LEVH+++LR K+G++ I T RG GY+ + E Sbjct: 181 DGETERDSNVLEVHVNHLRRKLGRSVIETRRGQGYIYAGSGE 222 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +K+LI+EDD +++ + L GY+ S + + + ++LD+ LP +G Sbjct: 5 IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 IR + +P+++LT + D I GL++GADDY+VKPF EL AR++ +LRR Sbjct: 65 EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTI 124 Query: 120 -NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + L N+ ++M +V + EE+ + PKE L L + + R+ L + + Sbjct: 125 LSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRV 184 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANEE 221 + ++ T++VHI +RDK+ + I T+RG GY N Sbjct: 185 WGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFEENSN 231 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD + L + EGY + + + G + L++LD+ LP +GL Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R KK +P+++LTA D D I GL +GADDY+ KPFA +EL ARI A+ RR Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 NQ--GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 N+ + L G L + V + EE+ LT KE A+L LM G + RE + +++ Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLV 217 + + +P TN ++V+I LR K+ G++ I T RG GY L Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLN 224 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 119/232 (51%), Gaps = 12/232 (5%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAG-HYSLVVLDLGLPDED- 58 MK+LI+EDD L + + GYA A ++ E Y LVVLDL LP D Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 59 ------GLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 G+ RIR+ +P+L+LTA D + K+ GLD GADDYLVKPF L EL AR+ Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 113 RALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHRE 172 RALLRR L V + L+ R G + LT KE+A+L LM AG V Sbjct: 121 RALLRRSPQAQAPVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSST 180 Query: 173 ILYNDIYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANE 220 L + ++ + E +N ++ +I LR K+ I T RG GY++ +E Sbjct: 181 ELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIEQSE 232 >UniRef50_Q20YF2 Two component transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=Q20YF2_RHOPB Length = 221 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 90/218 (41%), Positives = 122/218 (55%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDDT L + + A + GY D ++G Y +LDLGLP DGL Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R K +PVLILTAR + +K+ GL GADDYL KPF +EEL ARI AL+RR + Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +E+ V L L+ +++ G L LT EY L+ LM+ V + L IY Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 D++ +N +EV ++ LR K+G IRT RG GY L Sbjct: 181 QDDDRDSNVIEVLVNRLRKKIGADAIRTRRGQGYQLAD 218 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 119/222 (53%), Gaps = 8/222 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+V+D+ + L +A + GY + T R A Q++ L++LD+ LPD G Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +R + +PVL LT + D++ GLD+G DD++ KPF L+E+ AR+RALLRR Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 122 QGE----SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + L G + L+ QVW + LT E+ALL LM G + R + Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKA---RIRTVRGFGYML 216 ++N +E + ++ +I+ LR K+G+ IRTVRG GY L Sbjct: 208 VWNHRDEG-SGVVDTYIYYLRRKLGEPGQSLIRTVRGVGYQL 248 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL++EDD + + + + EG+ + + +++++ L++LD LP DGL Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 +IR + +L+L+A + ++I GL GADDYL KPF EEL ARI AL RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 ++L +L L + +V+ + + LT KE ++L + K G RE + +++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 +P TN ++V++ LR K+ + I+T RG GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 127/238 (53%), Gaps = 17/238 (7%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+L+V+D+ ++ L + + + T A +E HY +V+LDL LP+ G Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 L RIR + PV++LTA+DT DK+ GL++GADDY+ KPF+ E+ ARI A+LRR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 119 ---HNNQGESELIVGNLT------LNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 N Q + + G++ ++ + +V + + L LTPKE+ L+ L+ + Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 R+ L ++ +D + +++ I +LR+K+ ++T+RGFGY ++ Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGDD 240 >UniRef50_B0C620 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=B0C620_ACAM1 Length = 226 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 126/222 (56%), Gaps = 4/222 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILI ED+ ++ L + G+ A + + L++LDLGLP +DGL Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL--RRH 119 L IR + LP+++LTARD + D + L+ GA+DY+ KPF EEL ARI+ L RR Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 120 NNQGESE--LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Q SE L VGNL+L++ RQ W+G + L+ KE+ L L+ + +E L N Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 ++ +D +P +N +EV+I +LR K G I TVRG GY L ++ Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRKFGSQYIETVRGMGYRLNSS 224 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ + L + + GY + A ++ A L+++D+ LPD G Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN- 120 R+R+ + PV+ L+ARD+ DKI GL VG DDY+ KPF+L+E+ AR+ A+LRR Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + ++ + VG+L ++ +V++ G + L+P E+ LL ML + + + +++ Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 +D + ++ +E +I +R K+ + I T RGFGY++ Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIMR 249 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 303 bits (778), Expect = 2e-81, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 10/229 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VEDD++LL+ L + G+ + + + H L++LD+ LP DG Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR---RH 119 + K+ T+P+++LTA +IAGL++GA DY+VKPF++ EL AR+RA+LR R Sbjct: 64 CRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 120 NNQGE-SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + L VG + L+ R+VW E+ L+ KE+ LL+ LM AG + R++L + Sbjct: 123 RQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERV 182 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222 + D S T++VH+ LR+K+ IRTVRG GY + Sbjct: 183 WGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPATD 231 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L++EDD + + + G+ ++ R A + ++VLD LP DGL Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR PVLIL+A + ++I GL G DDYL KPFAL EL AR+ AL RR Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 121 NQGESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 E+ L G+L +++ R V G + LT +E+ +L L+ AG V R +L ++ Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 +++ +P TN ++ H+ LR K+ + I TVRG GY++ + Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYVVRPS 224 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 4 LIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFL 63 L+VED L + L + EG+A D T A+ + Y +VVLD+ LP DGL L Sbjct: 2 LLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSLL 61 Query: 64 ARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP-FALEELHARIRALLRRHNNQ 122 R R VL+LTA+ DK+ GLD GADDYL K LEEL ARIRAL+RR + Q Sbjct: 62 KRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQQ 121 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 + L +L ++ R V G + LTP+EYALL L G V R +++ +Y+ Sbjct: 122 KDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDEY 181 Query: 183 NEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANEE 221 +E ++N ++V+I LR+KV I T G GYML ++ Sbjct: 182 DENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYMLRGEDD 224 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 7/222 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+V+D+ + + GY TT Q L+VLDL LP DG+ Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 AR+R+K + +L+LTAR D++AGL VGADDYL KPF+ EL AR+ A+LRR + Sbjct: 65 TARLREKS-DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 123 G--ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S + ++ ++ R+ G+ L LTP E+ LL L + RE L ++ Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVA 218 D + ++V++ +R K+ G+ IRT RG GY V Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRFVD 225 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 1 MK--ILIVEDDTLLLQGLILAAQTEG-YACDSVTTARMAEQSLEAGHYSLVVLDLGLPDE 57 MK I+I+EDDT + Q + + EG + TT +++ +L++LD+ LP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 DGLHFLARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRAL 115 +G R+R+++ T +P+++LTAR TDKI GL +GADDY+ KPF++ EL ARI A+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 LRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 LRR S G L ++ V G+E+ LT KE+ALL L G + RE L Sbjct: 121 LRRTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLL 180 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVG-KARIRTVRGFGYMLVANEEN 222 + ++ D + T TL+VHI +R K+G I T G GY V + Sbjct: 181 DRVWGIDYDGETRTLDVHIRRVRQKLGIDGYIETAVGIGYRFVEAGKQ 228 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++EDD+ + + L+ Q EG T + +++LD+ LP +DG Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA +R + + PV+IL+A+ ++ +++ GL GADDYLVKPFA EL AR + L+RR Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 121 NQGESELI--VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 L G L L++ + + + + + +E+ L+ L+ + + + + + Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVA 218 + +P TN ++V + LR KV K I T+RG GY+L + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVLKS 224 >UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=Proteobacteria RepID=C8KZR7_9PAST Length = 225 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 96/222 (43%), Positives = 141/222 (63%), Gaps = 2/222 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD ++ + + YA D V + AE++L Y LV+LDLGLP +DGL Sbjct: 1 MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L+ IRQKK + PVLI+TARD L +++GLD GADDY++KPF + EL AR+RA+LRRH Sbjct: 61 QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGE--ELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 Q +L G +TL+ V + G+ + L+ KE+++L L+ +AG + R L + I Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANE 220 Y W E +N ++ IH LR K+GK +I+ VRG G+M+ + Sbjct: 181 YAWGEEVESNAIDFLIHGLRKKIGKEQIKNVRGVGWMMPKGD 222 >UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PY86_9GAMM Length = 222 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 90/222 (40%), Positives = 135/222 (60%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD + LI + + E YA D R A +L+ Y +++LDLGLP+ DG+ Sbjct: 1 MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R K PVL+LTARD + D++ GLD GADDY+ KPFA+ EL AR+R L+RR Sbjct: 61 SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L VG+LTL++ +++ G E+ +T KEY LL+ M + L N IYN Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 W+ +N +E I+ LR K+G+ RI+ +RG G+ + A ++ Sbjct: 181 WEAGIESNAIEFLIYGLRKKIGQKRIKNIRGLGWYISAESQD 222 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VEDD + L L G+A D V Y L+VLD+ LP DG Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 R+RQ+K P+L++TA+ DK+ GL++GADDY+ KPF++ E+ AR++AL RR Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 119 ----HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 ++ + +G + + +R+V + GE + LT KE+ LL G R+ L Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEE 221 ++++ + ++T+ HI+ LR+K+ ++TV G GY EE Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAEREE 239 >UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q48H36_PSE14 Length = 222 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 91/215 (42%), Positives = 124/215 (57%), Gaps = 1/215 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED L L+ A +GYA D + R A Y L+VLDLGLP GL Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L + R K PVLILTAR + +++I GL GADDYL KPF EEL RI+ALLRR + Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + L L L+ GR+ V G ++ LT E+ LL ML G + + L +Y Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGY 214 + +NE +N +EVH+++LR K+G+A + T RG GY Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRAVVETRRGQGY 215 >UniRef50_Q2S8G9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Proteobacteria RepID=Q2S8G9_HAHCH Length = 228 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ LL L GYA D+ +A + Y L V+DLGLP GL Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + R P+LILTAR DK++GL+ GADDYLVKPF + EL AR+ ALLRR + Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + G +TL+ + V + G L LT EY L L+ +AG V + L +Y Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLV 217 D + +N +EV I LR K+ I T+RG GY Sbjct: 181 QDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRFN 221 >UniRef50_C1SIE7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE7_9BACT Length = 240 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 124/227 (54%), Gaps = 5/227 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILIV+D+ L+ L + Y+ D+ + + YSL++LD+ LP DG Sbjct: 14 MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 73 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ T PVL+LTA+ ++D+I GLD G+DDYLVKPFA+ EL AR+RALLRR N Sbjct: 74 CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 133 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L V ++ LN V G L LT KEY + L+ V + L ++ Sbjct: 134 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 193 Query: 181 WDNEPS--TNTLEVHIHNLRDKVGKA---RIRTVRGFGYMLVANEEN 222 + + +N ++VHI NLR K+G IRT RG GY++ EN Sbjct: 194 DEFDEFNASNFIDVHIKNLRKKIGDENHLIIRTKRGIGYIINDQNEN 240 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 127/220 (57%), Gaps = 7/220 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIVED+ L + + L + E Y D + + + Y L++LDL LP+ +GL Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +IR + T P++I+TA+ DK+AGLD GADDY+VKPF +EEL ARIRA+LRR Sbjct: 63 ICRQIR-QNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR--Q 119 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 ++ + + + ++ +V + G+ L LT EY LL L+ + RE + D++ + Sbjct: 120 PQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGY 179 Query: 182 DNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLV 217 D E TN ++V+I LR+K+ I TVRG GY++ Sbjct: 180 DTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYVVR 219 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L++EDD + + + G+A DS R G YS ++D+ LP+ DGL Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R PVLIL+A+ ++ D+I GL G DDY++KPF+ EL R++AL+RR Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 121 NQGESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 L +G L +++ R+QV G ++ L KEYALL + AG+ + + + +Y Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 ++ +P TN ++V + LR K+ K I+T+RG GY+L ++ Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVLRSH 224 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VED+ + Q + A + Y V T A L + VVLDLGLPD DGL Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R + PVL+L+ARD + D++ GL++GADDYL KPF+++E+ AR+R+LLRRH Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L G + +++ R V G + LT +EYALL + + R ++ ++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 + TN ++V++ LR K+ I+T+RG GY L Sbjct: 225 ASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 10/226 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+L++ED+ L + L EGY + Q+ ++ L++LD+ LP +G Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L R+RQ P++ILTAR+ + + GL GADDY+ KPF + EL AR+ A+LRR Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 122 -------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 E + VG+L++ + +V + GE + L PKE+ +L L+ + G + R+ L Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLV 217 N ++ +D T++VH+ +LR K+ +I ++RG GY LV Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLELGQSVQIESIRGVGYKLV 229 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+ +DD + + + L + + + T R A + +E +V+LD+ +P DG Sbjct: 33 MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 IR KK+ P+++LTA+D D++ GL++GADDY+ KPF+ E+ ARIRA++RR Sbjct: 93 EACREIR-KKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151 Query: 121 NQGE-------SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 + + + LT+++ +R+V + GE++ PKE+ LL +L+ GS RE Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211 Query: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKVGK---ARIRTVRGFGYMLVANE 220 L ++ +D T++VHI +R ++ K I+TV G GY + Sbjct: 212 LLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYDCIQTVWGIGYKFGVDS 261 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +L+VED+ + + EGY V R G LV+LD+ LPD GL Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R+R + LP+L+LTA D + D++ GL GADDYL KPFA +EL ARI ALLRR + Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 122 QGES-ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E + G L L+ R GEE+ LTP E+ LL+ LM + G + R+ ++ +++ Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE 221 D + TN ++V+++ +R K+ +A I TVRG GY A E Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYRYTACSE 230 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 12/230 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILIV+D+ ++ + + EG+A + A L Y L++LD+GLP DG Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L ++R + + PV++LTAR D++ GL++GADDY+VKPF+ EL AR+RALLRR Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 122 QGESELIVGN-------LTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 +G+ L L+ RR+ +L L PKE+ LL+ L G RE+L Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVAN 219 ++ +D T++VHI LR K+ I+T G GY + Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIEG 232 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 110/232 (47%), Gaps = 14/232 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 ILIVEDD + Q + + E + C + + L+VLDL LP DGL Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73 Query: 63 LARIRQK-KYTLP-VLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 RIRQ+ P +L+LTA+ D+I GL GADDYLVKPF+ EL AR+RALLRR Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133 Query: 121 NQGESE---LIVGNLTLNMGRRQVWM----GGEELILTPKEYALLSRLMLKAGSPVHREI 173 QG+ + +++ + Q EEL LT E+ LL+ M G +R Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193 Query: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANE 220 L ++ D ++ HI LR K+ I+TV G GY + Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDPD 245 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++LIVEDD L Q L GY D V E G Y +++LD+ LP DG Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +A++R+K ++PVL+LTARD + DKI GLD GADDY+ KPFA EL A +RAL RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +L G+L LN+ + G + + L+ KE++L LM AG V +++L ++ Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVAN 219 ++ N +E ++ LR K+ ARI T+R GY VA+ Sbjct: 181 VESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRFVAD 223 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 8/225 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+D+ + + L + ++ + + + A + + L++LDL LP+ G Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +IRQ K P+L+LTA+ T DK+ G GADDYLVKPF+L EL ARI+A+LRR N Sbjct: 64 VCQKIRQDK-QTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 122 QGES----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + E G L ++ R +V + G + LT E+ +L L+ G RE L Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKV---GKARIRTVRGFGYMLVAN 219 + + + T++ HI N+R K+ I TV G GY + Sbjct: 183 VMGLEYKGYDRTIDAHIKNIRKKLNLEKNQLIITVYGVGYKFEGD 227 >UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria RepID=Q2T4E0_BURTA Length = 255 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 110/216 (50%), Positives = 146/216 (67%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VEDD L+ GL + EG+A D V A +L Y L++LDLGLPD+DGL Sbjct: 36 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 95 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA +R++ LPV+++TARD L D+IAGLD GADDYLVKPFALEEL ARIRA+ RR Sbjct: 96 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 155 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + ++ L VG L L+ R QVW GG+E+ L+PKE+ LL LM + G+ + RE +Y+ Sbjct: 156 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 215 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W E +N ++VHIHNLR K+G I TVRG GY + Sbjct: 216 WGEEIESNAVQVHIHNLRKKLGHDTILTVRGVGYRI 251 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 131/223 (58%), Gaps = 4/223 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+VEDD + Q + ++ G+ T + +G + ++++D LP+ DGL Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 + +R ++ + PVL+L+A + D+++GL G DDYL KPFA+EEL ARI AL+RR NN Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 E+ L VG L++++ R V GE + L P+E+ LL LM + + R +L D++N+ Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 182 DNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANE 220 P TN ++VHI LR K+ I+++RG G+ML E Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFMLRVPE 258 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD + + L E Y D T + Q + + +Y L++LD+ LP+ DG+ Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F ++R ++YTLPVL +TA D ++KIAGL+ GADDY+ KPF LEEL AR+RALLRR Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 121 NQGE-SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + L L L + R++ +L LTPKE+A+L + RE + ++++ Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANE 220 ++ + P T+ H+ LR K+ I TV G GY L E Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLKPIE 226 Score = 72.4 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL V+DD+ LLQ L E Y ++ ++L+ + L++LD+ +P G+ Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 FLARIRQKK--YTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 +R+ LP++ TA + A G D+ + K + +L A + ++R Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 Query: 120 NNQG 123 Q Sbjct: 660 YLQQ 663 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+V+DD + L Q EGY ++ + +A + +SL++LD LP + G+ Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVA-AAHNCYAFSLLILDWMLPGKSGV 59 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F +R++ P+L+LTARD + D+I GLD GADDYL KPF EEL A +RALLRR Sbjct: 60 EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVE 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + +L ++ R V G L LTPKEYA+L L+ AG V R L I++ Sbjct: 120 LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWH 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVAN 219 D N ++VH+ NLR K+ I+TVRG G+ + + Sbjct: 180 ADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRISPS 222 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 13/231 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+++V+D+ + L + EGY A + +V+LD+ LP DG+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +R KKY +P+++LTA+D+ DK+ GL++GADDY+ KPF+ EL AR++A LRRH + Sbjct: 64 VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 QG-------ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 Q +E+ + ++ + + GE++ LT +E+ L L G + RE L Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANE 220 ++ +D T++V I LR+K+ I T RG GY L +E Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE 233 >UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria RepID=B4RXL0_ALTMD Length = 221 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 97/221 (43%), Positives = 137/221 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L L L+ + YA D V T A +L G +VVLDLGLPD DGL Sbjct: 1 MRILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + L IR+K TLPVLILTARD ++DKI+GLD GADDYL KPF ++EL AR+R L RR Sbjct: 61 NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ++ + + N++L+ + + E + L +E +L L+ AG + + L N +Y Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 W E ++NT+EVH+ +LR K+ I+T+RG GY + + E Sbjct: 181 WGEEVASNTIEVHVSHLRKKMPDNFIKTIRGVGYCISKSGE 221 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 133/222 (59%), Gaps = 4/222 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K LIVEDD LLL+ L + EG+ D A Q + Y +++LD+ +P DG+ Sbjct: 4 KALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVK 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 ++R + +P+++LTA+ L DK+ GL+ GADDY+ KPF+ +EL R++ +LRR+N Sbjct: 64 VCKQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNK 122 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 E ++++ +LT+++ +V+ G+ + LTPKE+ LL L + RE+L N ++ Sbjct: 123 VQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGI 182 Query: 182 DNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLVANE 220 ++ +N ++V+I N+R+K+ I T+RG GYML + Sbjct: 183 ASDYDSNIVDVYIKNIRNKLEDKPPKLILTIRGRGYMLSTEQ 224 >UniRef50_A5WDA5 Two component transcriptional regulator, winged helix family n=14 Tax=Gammaproteobacteria RepID=A5WDA5_PSYWF Length = 224 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 86/217 (39%), Positives = 131/217 (60%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL++EDD+ + G++L ++ G D + A+ E +L+ G + V+LDL LP DG+ Sbjct: 3 RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDGMT 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L R K PVLI+TARD + +++AGL+ GADDYLVKPFAL+E+ AR++AL+RR Sbjct: 63 VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQG 122 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 + + E+ G + +QV G+ + LT KE A+L +++ R L + +Y W Sbjct: 123 RCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGW 182 Query: 182 DNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 + +N +EVHIH+LR K+G I T RG GY L Sbjct: 183 QQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYLNP 219 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 13/231 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+V+DD +++ + EGY A A + + + ++D+ LP DG Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 FLARIR--QKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR- 118 + ++R +K PV+ L+A+ DK+ GL++GADDY+ KPF++ E+ ARI+A+ RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 119 -----HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 + +++ L +++ R +V + +++ LTP E+ LL L G R++ Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVAN 219 L + ++ +D T T++VHI LR K+ I TVRG GY Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDP 259 >UniRef50_B2JHN0 Two component transcriptional regulator, winged helix family n=4 Tax=Burkholderia RepID=B2JHN0_BURP8 Length = 228 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 95/216 (43%), Positives = 132/216 (61%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L+ GL +A + G+ D + AE +L HY LV+LDLGLP G+ Sbjct: 10 MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + +PVL+LTA+DT DK+ GLD GADDYL KPF L EL +R RAL+RR Sbjct: 70 DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +G + L+++ + V G + LT +E+A+L L+ AG P R + +Y Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W E +N +EVH+ NLR K+G IRTVRGFGY++ Sbjct: 190 WHEEVESNAIEVHVSNLRKKLGGDVIRTVRGFGYVV 225 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLP-DEDGL 60 IL+VED+ + L EGY T A ++ L++LD+ LP D DGL Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI------RA 114 RIR +P+L+LTARD + D++AGLD GADDYL+KPFA EEL AR+ + Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 115 LLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREIL 174 R + +LTL+ R + G + LT +EY LL M + R+++ Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 175 YNDIYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANEE 221 ++ +D +N LEV++ NLR + ++TVRG GY L E Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYALRLPTE 236 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+V+DD +L + A + E + + +AR ++LE L+VLD+ LPD GL Sbjct: 1 MKILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 + ++++K +PV+ LTAR + D I GL++GADDY+ KPF L ARI+A+ RR+ Sbjct: 61 DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120 Query: 120 -NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + + + +G++ ++M + G++ L KE+ LL ++ G +R+ + + + Sbjct: 121 MGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 + D T++VHI LR+K+G I+TVRG GY LV E+ Sbjct: 181 WGMDFFGDFRTVDVHISKLREKIGSEFIKTVRGVGYKLVIPED 223 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 8/223 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L++ED+ + + + L E +A + + +++LD+ LP DG+ Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +IR K P+++LTARD++TD++ GLD GADDY+ KPFA+EEL ARIR + RR Sbjct: 89 VCQKIRSVK-KTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147 Query: 122 Q---GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 Q + L L + + R V + + LT +EY LL M + R++L + + Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 + ++ TN ++V++ LR+K+ + I TVRG GY++ Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVMR 250 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 9/227 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 ILI+EDD + L + GY M + ++ + LV+ D+ LP DG Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 IR+ +PVL+LTA + DK+ G D GADDY+VKPF EL+ARI+ LL+R Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 123 -----GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 +L +L ++ RR+V G + L+PKEY LL+ ++ A + R + Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVANE 220 ++N + TN ++V+I+ LR K+ K I T G G++L + Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFILTDEK 230 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL+VEDD + LI GY + A + L + ++++D+ LP DG+ Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 IR K P+L+L+A ++ DKI LD+GADDYL KPF EEL +RI+AL RR Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + + L GN+T++ +V +E+ +P EY L + LM + R + ++ Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGK---ARIRTVRGFGYMLVA 218 ++ D + +TN ++V+I +R+K+ + I TV+G GY++ Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDETEQKIIHTVKGTGYLIKD 224 >UniRef50_C6CH89 Two component transcriptional regulator, winged helix family n=2 Tax=Dickeya RepID=C6CH89_DICZE Length = 232 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 131/222 (59%), Positives = 177/222 (79%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+LIVEDD LL +GL+ A + EGY CD +TA+ A+ + + HYSLVVLDLGLPDEDGL Sbjct: 1 MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R R+ Y PVLILTARDT+ D++ GLDVGADDY++KPFAL E AR+RAL+RRH Sbjct: 61 TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +S + V N+TL++ +QV + + ++LTPKE+A+LSRL+LKAGS VHRE+L+ D+Y+ Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN 222 WD++PS+N+LEVHIHNLR K+GK RI+T+RGFGY+L ++++ Sbjct: 181 WDDDPSSNSLEVHIHNLRQKIGKNRIKTLRGFGYLLTKDDQS 222 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+L+ ED T + L GY D A E Y + D+ +P DG+ Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + ++R+ P ++LTAR+ + D++ GLD GADDYL KPF+L EL AR+RA+LRR Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + + V +L L++ W G E+ LT +E++LL LML + PV + + +++ Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 + TN ++V+I LR+K+ I+T RG GY + + Sbjct: 181 QSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAIRDSS 224 >UniRef50_C6Q063 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q063_9CLOT Length = 367 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 122/220 (55%), Gaps = 4/220 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 + IL+V+D+ +++ + + + EG+ + A + + S+++LD+ LP +G Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + I++ +++LTA+D + D++ GLD+GADDY++KPF+ +EL ARI A LR Sbjct: 208 EVCSEIKKWVNAS-IIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSL 266 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + +GN LN +++ L L+P EY LL L+ G + + + ++ Sbjct: 267 PELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG 326 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA---RIRTVRGFGYMLV 217 +D N +EV+I LRDK+G IRTVRG GY +V Sbjct: 327 FDFNGDVNIVEVYIRYLRDKIGDNEHSIIRTVRGVGYKVV 366 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 7/222 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+VED+ + + + + G+ A L L++LD LP G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 FLARIRQKK--YTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR- 118 F+ ++++ +PV++LTAR D++ GL+ GADDY+ KPF+ +EL ARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 E + + L+L+ +V G E L + P E+ LL M RE L N + Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216 + + T++VHI LR + ++TVRG GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 116/228 (50%), Gaps = 9/228 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIV+D+ ++ + EGY + R A S L+VLD +P+ G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L IR+K +P+++LTA+ DK+ G + G DDY+VKPF+L EL ARI+ +L+R Sbjct: 64 VLREIRKKS-QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEA 122 Query: 122 QG---ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + E L G+LTL +R+V++ G+ L LTP E+ LL + G R L Sbjct: 123 KTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYA 182 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEE 221 E T++ HI NLR K+ I+TV G GY L E Sbjct: 183 IGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRGE 230 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 299 bits (768), Expect = 3e-80, Method: Composition-based stats. Identities = 77/218 (35%), Positives = 119/218 (54%), Gaps = 6/218 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 ILIVED+ + + + Q G+ C+SV A Q ++ Y L++LD+ LP DG Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 + ++ P + L+A++++ D+I G +GADDYL KPF + EL AR+ A+LRR Sbjct: 64 I----EQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 GN+ ++ QV+ G+ + TPKEY LL L+ + RE L ++ +D Sbjct: 120 AS-CFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYD 178 Query: 183 NEPSTNTLEVHIHNLRDKVG-KARIRTVRGFGYMLVAN 219 E T T++VHI LR K+ + RI+TV GY L + Sbjct: 179 FEGDTRTVDVHIQKLRKKLEWEDRIKTVYKLGYRLEVS 216 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VEDD L+L+ + + G+ C A++ LVVLD LP DGL Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 R R+ +Y PVL+LTAR ++ L GADDYL KPF+ +EL AR++ALLRR Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 123 GESELIVGN-LTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 G + N L ++ RQV + G + L +E+ LL++L G R+ L ++ + Sbjct: 134 GYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGY 193 Query: 182 DNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANE 220 D E T++VH+ LR+K+ + TV G GY Sbjct: 194 DFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGPP 237 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 9/228 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VEDD + L A GY S + R A + L+VLD+ LPD DG Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 +R + PVL LTAR + D+I GL G DDY+ KPF ++E+ R+RA+LRR Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 123 GE-----SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 L L+L+ +V G L L+P E+ LL+ + + + + Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE 221 ++ +D T ++ ++ NLR K+ A + TVRG GY L + Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLRLPRD 240 >UniRef50_B2HUW9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=12 Tax=Acinetobacter RepID=B2HUW9_ACIBC Length = 220 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 86/216 (39%), Positives = 129/216 (59%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+ EDD + + + +GY D V A ++E Y ++LD GLP G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IR K+ +PV+ +TARD++ D++ GLD+GA+DYLVKPF+LEEL ARIRA LR+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 +S L G+L L+ + V G+ + LT KE+ +L +LM+ + R+ L +Y Sbjct: 121 LNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W E +N +EV I+ LR K+G + I+T+RG GY + Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSSIKTIRGLGYRM 216 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 11/226 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +LIVED+ L L + EG+ V A E +V+LDL LP G Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 ++R + ++PV+++TARD+ DK+ GL++GADDY+ KP++ EL ARIRA+LRR + Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 GES-----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 ++ L G + +++ R V + GE + L KE+ LL LM +G + R L + Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVA 218 ++ D T TL+VH+ LR K+ + + TVRG GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 127/234 (54%), Gaps = 13/234 (5%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L++ED+ L + L EGY ++ ++ + L++LDL LP +G Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 ++++R + PV+ILTA++ + + GL GADDY+ KPF + EL AR+ A+LRR Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 122 ---------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHRE 172 Q S++++G LT+ + +V + GE + L PKE+ +L L K G + R+ Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 173 ILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANEEN 222 L N ++ +D T++VH+ +LR K+ I ++RG GY LV N++ Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVVNKKQ 237 >UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acinetobacter RepID=C0VPI8_9GAMM Length = 219 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 83/216 (38%), Positives = 123/216 (56%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+ EDD + + + +GY+ D V A ++E Y V+LD GLP G Sbjct: 1 MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKASGD 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IRQ+ PV+ +TA+D + D++ GLD+GA+DYLVKPF LEEL AR+R+ LR+H Sbjct: 61 QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L +L L+ + + + + LT KE+ +L +LM K RE L +Y Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 W +E +N +EV I+ +R K+G I+TVRG GY + Sbjct: 181 WGDEIESNAIEVFIYQIRKKIGGQYIKTVRGLGYRM 216 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+ED+ + L+ + GY + V + L+ Y L++LD+ LPD +G Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +RQ +PV+ LTA+D + D++ GL++GADDYL KPF+ EL ARI++LLRR Sbjct: 61 SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E+EL + +L +++ +VW G + L+ E+ LL L++ V R + ++++N Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 + + TN ++V + LR K+ I T+RG GY + Sbjct: 180 INFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKI 219 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 11/223 (4%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+V+DD L+ + + + G+ D A + E LVVLDL LP DG+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN- 120 R+R +PV++LTAR +D+I GL++GADDY+ KPF+ EL R++++LRR N Sbjct: 117 VFRRLRA-HRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 121 ---NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 L G L ++ R G L LT +E+ LL+ L+ + G R L Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYM 215 ++ W +T+ VHI LR+K+ + TV G GY Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYR 277 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 298 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 122/235 (51%), Gaps = 17/235 (7%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLE---AGHYSLVVLDLGLPDEDG 59 I++VED+ L + A + EG+ + + A + L L+VLDL LP+ DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR- 118 L R+RQ K P+L+LTAR T D++ GL++GADDYL KPF+L EL AR+ A+LRR Sbjct: 64 LEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 119 -------HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHR 171 G + + G+LT++ R+V G+ + LT KE+ LL L G R Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 172 EILYNDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEE 221 + L + ++ D T++ HI LR K+G RI T+ G GY + Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYERPRD 237 >UniRef50_Q6FA81 Putative two-component response regulator n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FA81_ACIAD Length = 218 Score = 298 bits (765), Expect = 8e-80, Method: Composition-based stats. Identities = 85/218 (38%), Positives = 130/218 (59%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI EDD + + + +GY D V A +++ Y ++LD GLP G Sbjct: 1 MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R+ + PV+++TARD+++D++ GLD+GA+DYLVKPF+LEEL ARIR+ +R Sbjct: 61 QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Q +S L N+ LN + V + GE + LT KE+ +L ++M V RE L + +Y Sbjct: 121 QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA 218 W +E +N +EV I+ LR K+G I+T+RG GY + Sbjct: 181 WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE 218 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 298 bits (765), Expect = 8e-80, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 114/228 (50%), Gaps = 6/228 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL+VEDD L + E + + V + + ++ +Y L +LD + + GL Sbjct: 1 MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 IR P+L+LTARD + D++ GL+ GADDYL+KPFA EEL ARI AL RR Sbjct: 61 ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + E +TL+ +V+ G+ L LT KE+ LL + + R+ + N + Sbjct: 121 VSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNYV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVANEEN 222 + D + N ++ I LR KV + I VRG GY L EN Sbjct: 181 WGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRLYVAGEN 228 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 7/224 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 K+L+V+DD +L+ + L + EG+ +V + + + + +V+LD+ LP +DGL Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R+R + +P+++LTA+ D++ GL++GADDY+ KPF+ EL ARI+A+LRR Sbjct: 66 LCRRLRAVRM-IPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124 Query: 122 QGESE---LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + L L + R+V + E +TP+E+ LL L RE L + Sbjct: 125 ADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAV 184 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK---ARIRTVRGFGYMLVAN 219 + +D T++VHI LR K+ ++TV G GY Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKLASLPHEYLQTVWGVGYKFTPP 228 >UniRef50_UPI0001C16C1D manR (Two component Transcriptional regulator, Winged helix family) n=2 Tax=Nostocaceae RepID=UPI0001C16C1D Length = 268 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 112/223 (50%), Gaps = 7/223 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+V+D+ L L EGY D + + + Y L++LD LP++ GL Sbjct: 33 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R++ +PVL LTA+DTL D++ GLD G DDYLVKPF L EL AR+RALLRR + Sbjct: 93 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152 Query: 121 NQGESE---LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + L VG+L L+M + G + L+ KE LL M + + Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 ++ + P +N + I LR K+ I TV G GY Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKIELGGESMLIHTVYGKGYRF 255 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 6/227 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLP-DEDGL 60 + LI+EDD L + + + +G + + +++LD LP DGL Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R PVL+L+A +++ GL G DDYL KPFA EL AR+ AL+RR Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 121 NQGESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + + + +L LN+ R G+ L L P+E+ LL+ LM A V R +L ++ Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEEN 222 ++ +P TN ++VHI LR KV A I TVRG GY L ++ Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSLSDRPQD 257 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 10/230 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 ++++++ED+ + + + EG+ + +++ +VVLD+ LP DGL Sbjct: 15 VRVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGL 74 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 RI Q +PVL+LTARD TD + GL VGADDY+ KPF++ EL AR++ALLRR Sbjct: 75 EVCRRI-QADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVR 133 Query: 121 NQGES---------ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHR 171 L +G+L ++ R+V G LTP E+ LL L G+ + R Sbjct: 134 RAAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTR 193 Query: 172 EILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE 221 E L D+++W + T T++ H+ LR K+G +RTV G GY L E+ Sbjct: 194 EQLLADVWDWVDATGTRTVDSHVKALRRKLGSDLVRTVHGVGYALEIPED 243 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 7/224 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILI+ED+ + L + EGY + + + A LV+LD+ +P DG Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 A +R+ +P+L+LTA+ + D++ GLD GADDYLVKPF+ +EL AR+RA+LRRH Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 122 QGESE--LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + + L G + ++M ++ G ++L T KEYA+L L G P+ RE + ++ Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVA 218 + P+T T++ HI +LR K+ I+TV G GY L Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=6 Tax=Lactococcus lactis RepID=Q030C5_LACLS Length = 234 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 1 MK--ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEA-GHY-SLVVLDLGLPD 56 MK ILI+ED+ + L EGY S + E Y +V+LD +P Sbjct: 13 MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72 Query: 57 EDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116 DGL L R+++ +PV+ +TARD + DK+AGLD GADDYL KPF +EEL AR+R + Sbjct: 73 LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132 Query: 117 RRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 R N + G ++LN G V + LT +E+ALL L G + R+ + Sbjct: 133 R--KNTQPAIYSYGTVSLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILE 190 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANE 220 +++ + NT++ ++ LR K+ K I T+RG GY L ++ Sbjct: 191 EVWGMNFGGQLNTVDTYVRYLRKKLDKNMIETIRGLGYRLNKDK 234 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 15/229 (6%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 ILI EDD + + + L EGY R A + ++ LV+LD+ +P DG Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 + IR+++Y +P++ L+A+ + DKI+GL +GADDY+ KPF EL AR+ A LRR Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127 Query: 123 GESE---------LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 + ++ G LT++ +R V + + + LTPKE+ +L L E Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187 Query: 174 LYNDIYNWD-NEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYML 216 ++ ++ E NT+ VHI LR K+G+ I+TV G GY Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 +K+L+VED+ + + + L + GY + A L LVVLDL LP DGL Sbjct: 6 VKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGL 65 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 IR+ ++ILTA+ TDKI GL++GADDY+VKPF EL ARI+A+LRR Sbjct: 66 EVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRD 125 Query: 119 HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 G + G+L L+ ++ +E+ LTP EY+LL M G + RE + N I Sbjct: 126 RYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGI 185 Query: 179 YNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVAN 219 + D T TL+VHI LR+K+ I+T+ G GY Sbjct: 186 WGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 8/226 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I ++EDD + + L + EG+ S ++A + ++ +VVLDL +P+ DGL F Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 63 LARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R K +P+++LTA+ T DKI GL++GADDY+ KPF+ EL AR++ALLRR Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 121 ----NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 + E G+L ++ + +V + G+ + LT ++ LL L+ G + R+ + Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGK--ARIRTVRGFGYMLVANE 220 ++ WD + T++VHI LR+ + + I+T+RG GY Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYGNCIKTIRGVGYKWECEP 229 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 7/222 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L +EDD + ++ ++ G+ D V R + Y ++ LD LP DGL Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L +R PVL+L+A + +++ GL G DDYL KPF EE+ AR+ LLRR Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 QGES---ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 L VG LTL++ R+V+ G E+ L P EY +L +M AG + R +L+ + Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYML 216 + + +P TN ++VH+ LR K+ IRTVRG GY+L Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYIL 271 >UniRef50_C6VUR1 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C6VUR1_DYAFD Length = 226 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL+VEDD + L GY + MA ++ G + L +LD+ LPD DG Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 IR KK PVLIL+A DKI LD+GADDYL KP EL +RI AL RR+ Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 120 -NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + ++ L+ +L +N+ V G+E++L+ KE+ L LM + R + + Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 ++ + + TN ++V+I LR+K+ IRTV+G GYM+ + + Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMIASQK 226 >UniRef50_Q3MAE8 Response regulator receiver modulated diguanylate cyclase n=3 Tax=Cyanobacteria RepID=Q3MAE8_ANAVT Length = 684 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VEDD L+ + L+ + ++ Y D E Y L++LDL LP DG+ Sbjct: 1 MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGEEGWNFAELYTYDLILLDLILPKLDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 F ++R PVL+LT++DT K+AGLD GADDY+ KPF +EL ARIRALLRR Sbjct: 61 SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + L NL L+ +V G+ L LTPKEY LL + + L + +++ Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVA 218 ++ P+ +T+ HI LR K+ + I TV G GY L Sbjct: 181 FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLKP 223 Score = 85.1 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +++IV+DD +L L G ++ ++ +++ L++L + +P G+ Sbjct: 396 RVMIVDDDPQILTALQTLLSAWGIKVYTLAHSQGFLEAMALAEPELLILKMEMPSTSGIE 455 Query: 62 FLARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 RQ+ LP+L LT R + GADDY+ KP EL RI Sbjct: 456 LCQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPIVEPELIGRI 508 >UniRef50_C1ABP4 OmpR family two-component response regulator n=2 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABP4_GEMAT Length = 231 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+ EDD L + + + DSV A Y V+LD+ +P DG+ Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 +R ++ +P+L+LTARD + ++I GLD GADDYL KPF EL AR+RALLRR + Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S + VG+L ++ +Q G L LT +E+ LL+ L AG V R L +++ Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE 221 +++P+ N ++V++ LR KV + + T RG G +L + + Sbjct: 181 ENHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQGVLLSDDGD 225 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VEDD L Q L ++EGY R A + L++LDL LP GL Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 R+R + P+++LTAR TDK+ GL +GADDYL KPF ++EL ARI A+LRR + Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 123 GESE-LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 S+ + VG+L ++ R V ++L L+ +E+ +L L AG V RE +Y +++ + Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 182 DNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANE 220 D + T++ HI LR K+ I TV G GY V E Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVVPE 228 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 122/222 (54%), Gaps = 6/222 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKIL++ED+ + + GY D+V+ R Y+L++LD+ LP DG Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R K PV+ LTARD++ D++ GLD GA+DYLVKPF+ EL AR+RA LR+H+ Sbjct: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L + L ++ V + LT KE+ LL L +AG + R ++ ++I+ Sbjct: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKAR----IRTVRGFGYMLVA 218 + + TNT++V I LR KV I T+RG GY VA Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 125/223 (56%), Gaps = 6/223 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+ +D+ + L+ + EGY + + A + L+ + LV+LD+ +P+ DGL Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN- 120 RIR+ +P+++LTAR D+I GL +GADDY+ KPF+ EL ARI A LRR + Sbjct: 67 ACMRIREFSN-VPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHS 125 Query: 121 --NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + E+ VG L++++ R V + G+ + LT KE+ LL + RE L + I Sbjct: 126 FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQI 185 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYMLVAN 219 + + + T++ HI LR K+G+A I+TV G GY AN Sbjct: 186 WGTEYHGNLRTVDTHIKTLRLKLGEAGGYIQTVWGIGYKFEAN 228 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 8/223 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++LI+ED+ + + Q E Y + A + + V+LDL LPD G Sbjct: 7 RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 RIR + +P+L+LTA+ +D+I GLD+GADDY+ KPF+ +EL AR+RA++RR NN Sbjct: 67 ICKRIRLQS-QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 122 QGES----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 +G EL G+L +++ + W E + LT E+ LLS + +G R+ L Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLV 217 + +D T++VHI NLR K+ I TV G GY V Sbjct: 186 VLGYDYVGYDRTIDVHIKNLRHKIECEYYKYIVTVYGVGYRFV 228 >UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobacteria RepID=Q0I8A9_SYNS3 Length = 250 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 14/234 (5%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGH-YSLVVLDLGLPDEDG 59 ++IL+V+D+ L + L L EGY + + + L+VLD LPD G Sbjct: 12 IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71 Query: 60 LHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH 119 + RIR T P+L+LT D + D++ LD G DDYLVKPF++EEL AR+RA+ RR Sbjct: 72 VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131 Query: 120 NN---------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVH 170 + L VG LT+N R V G+++ L+ KEY LL LM G + Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191 Query: 171 REILYNDIYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANE 220 R + ++ D N L+V+I LR KV + I TVRG G++L Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVENKDLPSLIHTVRGVGFILRDES 245 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 8/227 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIV+D+ + + + +GY + A + ++ + L++LD+ +P+ DG Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH-- 119 IR++ LP+L+LTAR TDK+ GLD+GADDYL KPF EEL AR+ ALLRR Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 120 -NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 +L L +++ +V++ + LTPKE+ LL L+L +R+ L I Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANE 220 + D T++ HI ++R K+ K I TV G GY L + Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKEID 230 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 10/225 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +LIVED+ L L + EG+ VT A + +V+LDL LP G Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 ++R + ++PV+++TARD+ DK+ GL++GADDY+ KP++ EL ARIRA+LRR + Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 GES----ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 L G + +++ R V + G+ + L KE+ LL LM +G + R L + + Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVA 218 + D T TL+VH+ LR K+ + TVRG GY L Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_Q3M194 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostocaceae RepID=Q3M194_ANAVT Length = 725 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+LIVE+D L + + + D+ + +R A + EA Y L+VLD+ LPDE+G+ Sbjct: 1 MKLLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R + P+L+LT + D+IAG + GADDY+ KP+ L EL ARIRALLRR + Sbjct: 61 RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 L G L L+ +V G+ L LTPKEY LL + R L + I + Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRICS 180 Query: 181 WDNEPSTNTLEVHIHNLRDK-----VGKARIRTVRGFGYMLVANEE 221 D P + I LR K + I T+ G GY L + E Sbjct: 181 IDECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRLKSVPE 226 Score = 102 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 2/113 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++LIV+DD LL L Q G+ ++ + Q LEA L++LD+ +P G+ Sbjct: 607 RLLIVDDDPALLSILEAQLQPWGFQVTTLADSSQFWQYLEATTPDLLLLDVAMPGFSGIE 666 Query: 62 FLARIRQKKYT--LPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARI 112 ++ LPVL+L+A L GADDY++KP +L RI Sbjct: 667 LCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 719 Score = 70.5 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDE--DGL 60 +L+++DDT L++ + A ++VT +A Q L+ ++LDL P+ GL Sbjct: 483 VLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLTFPNTTESGL 542 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 LA+++ + T+PVL+LT LT ++ +GA+ +L KP E+ + LL R + Sbjct: 543 TLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLHRID 602 Query: 121 NQGESELIVGN 131 LIV + Sbjct: 603 TINARLLIVDD 613 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 118/227 (51%), Gaps = 8/227 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+ EDD L+ L Q EGYA +S A Y L++LD+ LP G Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 ++R+ + +P+L+LTAR + DK+ GL GADDYL KPF + EL ARI ALLRR Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 122 QGE---SELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + +G + ++ R +V G+ + L+ +EY LL L+ G V RE L + Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANE 220 + + T T++VH+ LR K+ ++TVRG GY L E Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDEE 230 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 14/228 (6%) Query: 5 IVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFLA 64 +VED+ + + + EGY ++ + E +VVLD+ LP DGL Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 65 RIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQGE 124 R+ Q +PVL+LTARD TDK+ GL VGADDY+ KPF++ EL AR+ L+RR Sbjct: 82 RV-QAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARA 140 Query: 125 SE-------------LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHR 171 + G L ++ +R+V G E+ LTP E+ LL L + + R Sbjct: 141 LVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTR 200 Query: 172 EILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 E L ++++W + T T++ H+ LR K+G +RTV G GY Sbjct: 201 EKLLEEVWDWADASGTRTVDSHVKALRRKLGADLVRTVHGVGYAFEPG 248 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 114/222 (51%), Gaps = 8/222 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+VEDD + L A GY+ + T + A G L+VLD+GLPD DG Sbjct: 15 VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR---- 118 +R + PVL LTAR + D+I GL G DDY+ KPF ++E+ RIRA+LRR Sbjct: 75 TRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDMP 134 Query: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 L +L L+ +V G + L+P E+ LL L+ + V ++ + ++ Sbjct: 135 PSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILSE 194 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYML 216 ++++D ++ ++ NLR K+ I+TVRG GY L Sbjct: 195 VWHYDFAGDARIVDTYVRNLRRKIDRFEPQLIQTVRGVGYCL 236 >UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellular organisms RepID=A1V147_BURMS Length = 283 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 99/217 (45%), Positives = 138/217 (63%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VEDD ++ +G+ A + +G A D V A +L Y L++LDLGLP DG+ Sbjct: 66 ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGIDV 125 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 L +R + LPVLILTARD + D++ GLD GADDYLVKPF L+EL AR+RAL+RR + + Sbjct: 126 LRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGR 185 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 ES + G LTL+ QV + G + L+ +E+ALL L+ + G+ + + L +Y W Sbjct: 186 SESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYGWG 245 Query: 183 NEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 E +NT+EV+IH LR K+G IR VRG GYM+V Sbjct: 246 EEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKE 282 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +L+V+D+ + + + L E A +++ LV+LD+ +P DG Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 L RIR++ +PV++LTAR + D++ GL +GADDY+ KPF EL AR++A+LRR Q Sbjct: 68 LQRIREES-AVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQ 126 Query: 123 GES--ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E+ + G+LT+ R G L LTPKE+ LL+ L G RE L + I+ Sbjct: 127 VEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWG 186 Query: 181 WDNEPSTNTLEVHIHNLRDKVGK--ARIRTVRGFGYMLVANEE 221 D + T++ HI NLRDK+G+ I TV G GY + Sbjct: 187 PDFQGDARTVDAHIKNLRDKLGEGAGLILTVWGVGYRFAEVPD 229 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 14/230 (6%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL+V+D+ + + + + EG+ + A + +E+ L +LD+ LPD DG Sbjct: 3 MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 RIR+ PV++LTA++ DKI GL +GADDY+ KPF EL AR++A LRR Sbjct: 63 TLCQRIRENHN-FPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 119 -----HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 NQ E + L L+M + + +++ LTPKE+++L L G V E Sbjct: 122 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 181 Query: 174 LYNDIYNWDNEPST-NTLEVHIHNLRDKV-----GKARIRTVRGFGYMLV 217 L+++++ ++ NT+ VHI +LR+K+ I+TV G GY + Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 6/219 (2%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 ++L+V+DD L + L + + EGY V+ A + + +V+LDL LP +GL Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 IR + T+P+++LTA+ D + GL+ GADDY+ KPF EL AR+RA LRR Sbjct: 77 ICQDIRTQS-TVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGET 135 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 L +G++ +++ QV G + LTP E+ LL L K RE+L ++ + Sbjct: 136 GQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWGY 195 Query: 182 DNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYM 215 + T + VH+ LR K+ + TVRG GY Sbjct: 196 RHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_A9HHL1 Probable two-component response regulator transcription regulator protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HHL1_9RHOB Length = 223 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M IL++ED+ + + EG++ D + +Y +V+LDL LP G Sbjct: 1 MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 ++R +K P+++LTA D +K+ GL +GADDYL KPF +EL ARI AL RR Sbjct: 61 GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120 Query: 121 N----QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYN 176 ++ + G +T + +V + + + LT KE LL L+ G + RE + N Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180 Query: 177 DIYNWDNEPSTNTLEVHIHNLRDKVGKA--RIRTVRGFGYML 216 ++ + +P TN ++V++ LR K+G+ RI T+R GY + Sbjct: 181 TVWGLNADPLTNVVDVYVGRLRRKLGQEGQRIVTLRNVGYRM 222 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 125/230 (54%), Gaps = 10/230 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+V+D+ ++ + + Y SV A + ++ G V++DL LP DG+ Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 +IR+ +P+++LTA+ + DKI GL++GADDY+ KPF+ +EL +RI+ +LRR + Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124 Query: 123 -----GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 + L N+ ++ R V E++ LTP E+ LL L A + R+ + Sbjct: 125 INLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEK 184 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANEEN 222 ++ ++ T +++HI +LRDK+ I+T+RGFGY V+ + + Sbjct: 185 VWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVSKKGD 234 >UniRef50_C1ZD82 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD82_PLALI Length = 235 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 2/220 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ LIVED LL L + EGYA D+ Y ++VLD LP G Sbjct: 1 MRALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGF 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R KK + PVL+LTARD + D++ GLD GADDYLVKPF EL AR+RAL+RR Sbjct: 61 DLLKQLRTKK-STPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAA 119 Query: 121 NQGESELIVG-NLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + ES L +G +T+N+ R+V+ E++LT +EY++ L L G V R LY+ I+ Sbjct: 120 GESESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEYLALHRGRVVPRTDLYDHIF 179 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 + ++E +N L+VHI NLR K+G+ I T RG GY++ + Sbjct: 180 DENDESLSNLLDVHISNLRRKLGRDVIETRRGLGYIIHSQ 219 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 8/227 (3%) Query: 4 LIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHFL 63 L+V+DD + + + + G+ A LE ++VLDL LP+ DG L Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 64 ARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQG 123 A +R+++ LPV++LTA D+I GLD GADDYL+KPF+ EL +R+RA+LRR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 124 ESE---LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 E L L +++ +R+V G + L LTP+E+ LL L RE L + ++ Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 181 WDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 D + + T++VH+ LR K+ + TV G GY V + Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVKARS 228 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 9/224 (4%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VEDD +L GL + + EGY R LVVLD+ LP+ +G Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 L +RQ+ PV++L+A+ TDKI GL++GADDY+VKPF L+EL ARI+A+LRR Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 123 G----ESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + G+++++M R V + LT +E+ LL+ + G RE L + Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLV 217 + + E S T++ + LR K TVRG GY Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +ILIVED+ + L EGY D R + G Y L++LD+ LP DG Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 ++ +R+ + PVL LTA+D + DK+ GL++GADDYL+KPF EL AR+R LLRR + Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 Q + + ++T++M RR V G+++ LT KEY LL L+ + G + R ++ + ++N Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 182 DNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE 221 + + TN ++V + LR K+ I TVRG GY+L EE Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLEIREE 226 >UniRef50_A6M1X5 Two component transcriptional regulator, winged helix family n=8 Tax=Firmicutes RepID=A6M1X5_CLOB8 Length = 229 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 4/220 (1%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 ILIV+D+ ++ + + + EGY A + + ++V+LD+ LP DG Sbjct: 11 ILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIMLPGMDGYEV 70 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 + I +K V++LTA D + DK+ GLD+GADDY+ KPF+ +EL ARI A +R + Sbjct: 71 CSII-KKSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFPE 129 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 +GN ++ ++ + L L P +Y LLS L++ G + + ++ ++ +D Sbjct: 130 LSDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWGYD 189 Query: 183 NEPSTNTLEVHIHNLRDKVGKA---RIRTVRGFGYMLVAN 219 N +EV+I LRDK+G I+TVRG GY +VA Sbjct: 190 FNGEDNIVEVYIRYLRDKIGDKDHNIIKTVRGVGYKMVAQ 229 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 125/222 (56%), Gaps = 5/222 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 ILI+EDD ++L+GL + EGY + + A +L+VLDL LP +G Sbjct: 7 ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 +R++K +P+++LTA+ +D + GL +GADDY+ KPF+++EL AR+ A LRR Q Sbjct: 67 CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRKQ 126 Query: 123 GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNWD 182 + G+ + R + G+++ L+PKE+ LL+ L+ AG + R+ + + ++ +D Sbjct: 127 TGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGYD 186 Query: 183 NEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVAN 219 + + +++ ++ LR+K+ ++TVR FGY Sbjct: 187 SRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFELP 228 >UniRef50_A6TPN8 Two component transcriptional regulator, winged helix family n=7 Tax=Bacteria RepID=A6TPN8_ALKMQ Length = 225 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+ILI+ED+ L + L + Y D + + Y L++LD+ LP DGL Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L IRQ+ PV++LTA+ +TDK+ GLD GADDYL KPFA EEL ARIRA+ RR Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKG 120 Query: 121 NQ-GESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + L G++ LN ++ +E+ LT KE LL+ L+L+ +E++ I+ Sbjct: 121 EVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYMLVANE 220 +D++ N +EV+I LR K+ K I T+RG GY+L Sbjct: 181 GFDSDVEHNHVEVYISFLRKKLLFLTSKVVINTLRGVGYILEVKS 225 >UniRef50_Q2BR69 Two component Transcriptional regulator, Winged helix family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BR69_9GAMM Length = 219 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 85/219 (38%), Positives = 131/219 (59%), Gaps = 2/219 (0%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L+VEDD LL Q + + Q Y D + + ++ H +++LDL LPD DGL Sbjct: 3 MHVLLVEDDPLLGQVIEIKLQERQYQVDWIQSGSAVLSTVRNLHPDIIILDLNLPDIDGL 62 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L R+R + + PVLILTAR + +++ GLD+GADDYL KPF ++EL AR+RA+ RR + Sbjct: 63 EILKRLRAENISTPVLILTARHAVEERVNGLDLGADDYLTKPFEMDELEARLRAVQRRLH 122 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + E+ G++ ++ RQV+ G + + +E+ LL L+ G + R + + Sbjct: 123 GRSKEEITFGDIKIDSAARQVFFKGSPIEASRREFDLLVLLLNNTGRVMTRAKIEATL-- 180 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVAN 219 + ++ +N LEVHIHNLR K+GK I TVRG GY + Sbjct: 181 YADDVESNALEVHIHNLRKKLGKELISTVRGVGYYVAER 219 >UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter RepID=Q6F8E2_ACIAD Length = 226 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 135/221 (61%), Gaps = 7/221 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILI+EDD ++ + I + + + V L + LV+LDLGLP DG+ Sbjct: 3 KILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPMMDGMQ 62 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L +IRQK +PVLI++ARD L +++ GL+ GADDYL+KP+ +EL ARI ALLRR N+ Sbjct: 63 VLKQIRQK-TGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNS 121 Query: 122 ------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 Q + L G + LN+ + G+E+ L+ +E+A+L LM + L Sbjct: 122 KDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKANLE 181 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 + +Y++D+E ++NT+EV+IH+LR K+GK IRT+RG GY L Sbjct: 182 DKLYDFDSEVTSNTIEVYIHHLRSKLGKNFIRTIRGLGYRL 222 >UniRef50_A9BQG9 Two component transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=A9BQG9_DELAS Length = 253 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 94/227 (41%), Positives = 133/227 (58%), Gaps = 11/227 (4%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M+IL+VED+ + GL + YA D TT A +LE + V+LDLGLPD DG Sbjct: 22 MRILVVEDNAGIAAGLQANLEQRRYAVDVCTTVAEAWHALEMERFDAVLLDLGLPDGDGS 81 Query: 61 HFLARIRQK-----------KYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELH 109 L R+R PVLILTARD + ++IAGLD+GADDYLVKPF ++EL Sbjct: 82 EILRRLRGPRRPGGDSQALPDPNTPVLILTARDQVRERIAGLDLGADDYLVKPFDIDELE 141 Query: 110 ARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPV 169 AR+RA+LRR Q + G L ++ R V G+ + ++P+E+++L L+ G + Sbjct: 142 ARLRAMLRRAGGQAAPVIRHGELEVDPAARTVRRDGKLVEMSPREFSVLWVLLQARGRVL 201 Query: 170 HREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 R+ + +Y+W +N +EVHIH+LR K+G A I T+RG GY L Sbjct: 202 SRQQIEEHLYSWGTAVESNAVEVHIHHLRKKLGNASIVTMRGVGYFL 248 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 13/227 (5%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 I++V+D+ + + + + EGY A + LE L++LD+ +P+ DG+ Sbjct: 6 IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIEA 65 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN- 121 +IR++K +P+++L+A+ DKI GL GADDY+ KPF EL AR+++ LRR+ Sbjct: 66 CTKIREEKN-MPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKKF 124 Query: 122 ------QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILY 175 + + + LT+N +V +G +++ LTP+E+ +L L G E +Y Sbjct: 125 NVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIY 184 Query: 176 NDIYNWDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLV 217 ++ + S NT+ VHI LR+K+ ++TV G GY + Sbjct: 185 ERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVE 231 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MKILI+EDD L+ + A D+ + + Y L+VLD LP DGL Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L +R + PVLIL+A + + +++ GL G DDY+ KPFA EL R+ L +R+ Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 +EL+VG L + + R V + EL+L PKE+ LL LM + R +L+ ++ Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 180 NWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYML 216 ++ +P TN ++VHI LR K I TVRG GY L Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRL 221 >UniRef50_A5FBX2 Two component transcriptional regulator, winged helix family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FBX2_FLAJ1 Length = 223 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M +L++EDD + + +I + + T MA ++ + ++++D+ LP DG+ Sbjct: 1 MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +R KK P+LIL+A DK+ LD GADDYLVKPF +EL +R+ AL RR Sbjct: 61 QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120 Query: 121 ---NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 N+ E+ G LT+N +V + + L+P+EY LL L+ + R + Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180 Query: 178 IYNWDNEPSTNTLEVHIHNLRDKVG--KARIRTVRGFGYMLVA 218 ++ + + +TN ++V+I LR+K+ I T++G GYML Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIEHNHKFIHTIKGIGYMLKE 223 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 8/223 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KILIVED+ + + + L + EGY D R+ + G Y L++LD+ LP +G+ Sbjct: 5 KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 L R+RQ +PV++LTA+D + DK+ GLD+GA+DY+ KPFA+EEL ARIR + + +N Sbjct: 65 VLRRLRQIS-EIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123 Query: 122 QGESELI---VGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 G+L +++GR V + LT KE+ LL LM+ + RE + + Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLV 217 + +D TN ++V+I LR K+ K I T+RG GY Sbjct: 184 WGYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFR 226 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 118/233 (50%), Gaps = 16/233 (6%) Query: 1 MK---ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDE 57 MK ILI +D+ + + + + EGY A +E LVVLD+ +P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 DG +IR K + +P++ L+A+ + DK+ GL +GADDY+ KPF EL AR+ A LR Sbjct: 61 DGYEVTRQIRAKHH-MPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 R-------HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVH 170 R + +S L VG + ++ RR V + GE++ LTPKE+ +L L + Sbjct: 120 RFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 REILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVA 218 E ++ ++ D NT+ VHI LR K+G+ I+TV G GY Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_D1VIP6 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VIP6_9ACTO Length = 248 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 119/222 (53%), Gaps = 5/222 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLE-AGHYSLVVLDLGLPDEDGLH 61 +++VEDD + + A + + V+T R A + SLVV+D+ LPD DG Sbjct: 27 VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 R++ +PVL L+AR L D++ GL GADDYL KPF++EEL ARIR +LRR Sbjct: 87 VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGV 146 Query: 122 -QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 S L G L L+ R+V +GG + L+P EY LL L+ AG V R + + +++ Sbjct: 147 LTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVWD 206 Query: 181 WDNEPSTNTLEVHIHNLRDKVG---KARIRTVRGFGYMLVAN 219 + + + +E I +LR KV I TVRG GY L Sbjct: 207 YGFDGESTVVETFISSLRKKVDTAPPTLIHTVRGVGYRLSEE 248 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 +LI+EDD + + + L + GY +S + + LD+ LP DG Sbjct: 8 VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN-- 120 IR +P+++LT + DKI GLD+GADDY+VKPF EL AR++A++RR + Sbjct: 68 CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 N + + + L ++ + G +E+ + PKE LL L R+ L + I+ Sbjct: 128 NDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIWG 187 Query: 181 WDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANE 220 + E T++VHI +R+K+ +A I+T+RG GY + E Sbjct: 188 YAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKFLEKE 231 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M++L+VED+ LL+ ++ + E + D+ Y ++LD+ +P DG Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 + +IR +K PVL LTARD+L D++ GLD G DDY+VKPF EL ARIRALLRR Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 N-QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 + + + + L + V + G+ + L+ K+Y LL L+ +G + RE +++ ++ Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 180 NWDNEPSTNTLEVHIHNLRDKVGK----ARIRTVRGFGYMLVAN 219 +D++ + +EV++H+LR K+ I+TVRG GY+L Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYILKEQ 232 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 112/223 (50%), Gaps = 7/223 (3%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 +IL+ +DD L+ L A EG+A + + A + LV+LD+ +P DG Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 RIR +P+L+LTAR DK+ G +GADDY+ KPF L EL R+ A+LRR Sbjct: 66 VCGRIRAAS-AVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124 Query: 122 QGES-ELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 ES L G+L +N R V +G LTP+E+ LL + G P RE L +++ Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVA 218 D +T+ V I LR+K+ I+TV G GY Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDP 227 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 MK+LI++D+ LL++GL + + EG+ A + E+G + ++LDL LP DG+ Sbjct: 17 MKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGI 76 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRH- 119 RIRQ+ + +++LTA+D DKI GL++GADDY+ KPF EL AR+R L+RR Sbjct: 77 TLCNRIRQQS-DVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQE 135 Query: 120 -NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 + E +L +++G R V G E + LTPKE+ +L L+ G RE ++ + Sbjct: 136 KGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLV 195 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGK-----ARIRTVRGFGYMLVAN 219 + T T++VH+ NLR+K+ I T G GY + Sbjct: 196 WGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 7/225 (3%) Query: 3 ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLHF 62 IL+VED+ L Q +++ + + A L+A LV+LD LPD DGL Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQ 122 ++R +PV++LTARD D + GL+ GADDY+ KPF++ EL AR +ALLRRH + Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 123 GESE--LIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 + + L +++ R+V L LT KE+ LL+ L R L + ++ Sbjct: 143 APTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 181 WDNEPSTNTLEVHIHNLRDKVG-----KARIRTVRGFGYMLVANE 220 + + +T+ HI+ LR K+ + ++TV G GY Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFTLPS 247 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 120/228 (52%), Gaps = 6/228 (2%) Query: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 M ILI+ED+ L + L + + EGY D + + + Y +++LDL LP G Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 L ++R++K V+IL+A+ L DKIAGLD GADDYL KPF ++EL ARIRA+ RRH Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILT--PKEYALLSRLMLKAGSPVHREILYNDI 178 EL+ +L LN+ + LT KE+ L+ LM + R + I Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199 Query: 179 YNWDNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVANEEN 222 + +D+E N ++V+I LR K+ IR VRG GY L + Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTLQEAGAD 247 >UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax=Actinobacteria (class) RepID=A4AIS8_9ACTN Length = 242 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 4/221 (1%) Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61 KIL+VEDD + + + +GYA VT A + ++S +D+ LP+ G Sbjct: 20 KILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGFE 79 Query: 62 FLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 +R++ +LPVL+LTARD + D++ GLD GADDYL KPFA E ARIRAL+RR Sbjct: 80 ICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDTA 139 Query: 122 QGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYNW 181 G++ L +G L L+ + G L ++ KE+ALL L G + R + ++++ Sbjct: 140 AGKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVWGT 199 Query: 182 DNEPSTNTLEVHIHNLRDKVGKA----RIRTVRGFGYMLVA 218 N ++ ++ LR K+ I TVRG GY L A Sbjct: 200 TAHIDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYALSA 240 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.223 0.866 Lambda K H 0.267 0.0681 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,379,513,805 Number of Sequences: 3077464 Number of extensions: 179113020 Number of successful extensions: 507980 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 35062 Number of HSP's successfully gapped in prelim test: 14177 Number of HSP's that attempted gapping in prelim test: 404003 Number of HSP's gapped (non-prelim): 58129 length of query: 222 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 98 effective length of database: 658,790,820 effective search space: 64561500360 effective search space used: 64561500360 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.7 bits) S2: 92 (39.3 bits)