BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (230 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P38684 TorCAD operon transcriptional regulatory protein... 467 e-130 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 205 1e-51 UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Rose... 202 8e-51 UniRef50_C4ZP42 Two component transcriptional regulator, winged ... 198 2e-49 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 197 3e-49 UniRef50_Q21BK9 Two component transcriptional regulator, winged ... 196 7e-49 UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 T... 190 3e-47 UniRef50_A0L527 Two component transcriptional regulator, winged ... 183 5e-45 UniRef50_B6ITF9 TorCAD operon transcriptional regulatory protein... 176 8e-43 UniRef50_A6VRR3 Two component transcriptional regulator, winged ... 175 1e-42 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 166 7e-40 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_Q5MDG2 Aerobic respirator control protein A (Fragment) ... 163 5e-39 UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=... 162 9e-39 UniRef50_A0LA52 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_Q2W9M0 Response regulator n=2 Tax=Alphaproteobacteria R... 160 4e-38 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 159 7e-38 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 159 8e-38 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 158 2e-37 UniRef50_B8IVD0 Two component transcriptional regulator, winged ... 156 6e-37 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_A4TVF9 Response regulators consisting of a CheY-like re... 150 2e-35 UniRef50_C3JXL3 Oxidative stress related two component system, t... 150 4e-35 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 149 5e-35 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 149 5e-35 UniRef50_UPI00016A3BF9 Response regulator n=3 Tax=pseudomallei g... 148 2e-34 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 146 5e-34 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 145 1e-33 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 145 1e-33 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV... 144 2e-33 UniRef50_A3JW86 DNA-binding response regulator n=1 Tax=Rhodobact... 144 2e-33 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 144 3e-33 UniRef50_C4TUI5 Response regulator consisting of a CheY-like rec... 144 3e-33 UniRef50_B8IIA6 Two component transcriptional regulator, winged ... 143 4e-33 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 143 5e-33 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 142 6e-33 UniRef50_Q5NY91 Response regulator n=1 Tax=Aromatoleum aromaticu... 142 8e-33 UniRef50_B1ZLF1 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_A5VZA1 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 141 1e-32 UniRef50_A1B7Z0 Two component transcriptional regulator, winged ... 141 2e-32 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 141 2e-32 UniRef50_Q212W6 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_A4U4W5 Two-component transcriptional regulator n=1 Tax=... 140 3e-32 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 140 5e-32 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 140 5e-32 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 139 9e-32 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 139 1e-31 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 138 1e-31 UniRef50_Q3KB13 Two component Transcriptional regulator, Winged ... 138 2e-31 UniRef50_B6IYL9 Two-component response regulator GltR n=1 Tax=Rh... 138 2e-31 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_Q7CXM1 Two component response regulator n=11 Tax=Alphap... 137 3e-31 UniRef50_B6R185 Response regulator in two-component regulatory s... 137 4e-31 UniRef50_C6QH06 Two component transcriptional regulator, winged ... 137 4e-31 UniRef50_Q2P1E0 VirG-like two component response regulator n=13 ... 136 5e-31 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 136 5e-31 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 136 6e-31 UniRef50_Q2W3Z2 Response regulator consisting of a CheY-like rec... 136 6e-31 UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Olig... 136 6e-31 UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphap... 135 8e-31 UniRef50_A8HVW3 Response regulator receiver n=2 Tax=Alphaproteob... 135 1e-30 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 135 1e-30 UniRef50_A3ERN0 Putative two component transcriptional regulator... 135 1e-30 UniRef50_A3NL94 DNA-binding response regulator n=27 Tax=pseudoma... 135 2e-30 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 134 2e-30 UniRef50_A6VZA5 Two component transcriptional regulator, winged ... 134 2e-30 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 134 2e-30 UniRef50_D0LLH3 Two component transcriptional regulator, winged ... 134 2e-30 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 133 5e-30 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 132 9e-30 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 132 9e-30 UniRef50_B0KI24 Two component transcriptional regulator, winged ... 132 9e-30 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 132 9e-30 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 132 1e-29 UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax... 132 1e-29 UniRef50_C7LZ74 Two component transcriptional regulator, winged ... 132 1e-29 UniRef50_A8GAJ9 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_A7ICZ4 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_Q398T9 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_C5CP31 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 130 3e-29 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 130 3e-29 UniRef50_A0Z5Z4 Two component transcriptional regulator, winged ... 130 3e-29 UniRef50_A4AL32 Putative two-component system response regulator... 130 3e-29 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 130 4e-29 UniRef50_C8Q1W1 Two component transcriptional regulator, winged ... 130 5e-29 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 129 6e-29 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 129 6e-29 UniRef50_A1VSF0 Two component transcriptional regulator, winged ... 129 7e-29 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 129 7e-29 UniRef50_B4WZT8 Response regulator receiver domain protein n=1 T... 129 8e-29 UniRef50_C1SP47 Response regulator with CheY-like receiver domai... 129 8e-29 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 129 8e-29 UniRef50_A3PND2 Two component transcriptional regulator, winged ... 129 8e-29 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 129 8e-29 UniRef50_B4SKL2 Two component transcriptional regulator, winged ... 129 1e-28 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 128 1e-28 UniRef50_A6TM13 Two component transcriptional regulator, winged ... 128 1e-28 UniRef50_C7I0W4 Two component transcriptional regulator, winged ... 128 1e-28 UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional r... 128 2e-28 UniRef50_P31079 Protein petR n=50 Tax=Alphaproteobacteria RepID=... 128 2e-28 UniRef50_B7RTP1 Response regulator receiver domain protein n=1 T... 128 2e-28 UniRef50_A9DQD6 Probable two-component response regulator protei... 127 2e-28 UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridi... 127 2e-28 UniRef50_P07545 Regulatory protein virG n=21 Tax=cellular organi... 127 2e-28 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 127 2e-28 UniRef50_D0LHP7 Two component transcriptional regulator, winged ... 127 3e-28 UniRef50_Q1NHY5 DNA-binding response regulator n=1 Tax=Sphingomo... 127 3e-28 UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanob... 127 3e-28 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 127 4e-28 UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax... 127 4e-28 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 127 4e-28 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 127 4e-28 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 127 4e-28 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 126 5e-28 UniRef50_Q11E93 Two component transcriptional regulator, winged ... 126 5e-28 UniRef50_A1SYE4 Two component transcriptional regulator, winged ... 126 5e-28 UniRef50_C8SKC4 Two component transcriptional regulator, winged ... 126 5e-28 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 126 7e-28 UniRef50_A3JEV6 Two comoponent transcriptional regulator, winged... 126 7e-28 UniRef50_D1C280 Two component transcriptional regulator, winged ... 126 7e-28 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 125 8e-28 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 125 9e-28 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 125 1e-27 UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Ps... 125 1e-27 UniRef50_Q07HV3 Two component transcriptional regulator, winged ... 125 1e-27 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 125 1e-27 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 125 1e-27 UniRef50_C0DY83 Putative uncharacterized protein n=1 Tax=Eikenel... 125 2e-27 UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea ph... 125 2e-27 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 124 2e-27 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 124 2e-27 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 124 3e-27 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 124 3e-27 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 124 3e-27 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 124 3e-27 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 124 3e-27 UniRef50_A9AXY0 Two component transcriptional regulator, winged ... 124 3e-27 UniRef50_Q2BM87 DNA-binding response regulator n=1 Tax=Neptuniib... 124 3e-27 UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 124 4e-27 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 124 4e-27 UniRef50_C5SHJ8 Two component transcriptional regulator, winged ... 124 4e-27 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 123 4e-27 UniRef50_B2V706 Two component transcriptional regulator, winged ... 123 4e-27 UniRef50_C6D1N2 Two component transcriptional regulator, winged ... 123 4e-27 UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splen... 123 5e-27 UniRef50_D0XTW5 Two component transcriptional regulator, winged ... 123 5e-27 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 123 5e-27 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 123 6e-27 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 123 6e-27 UniRef50_Q1GKH2 Two component transcriptional regulator, winged ... 122 6e-27 UniRef50_B7RXJ1 Response regulator receiver domain protein n=1 T... 122 7e-27 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 122 7e-27 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 122 7e-27 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 122 8e-27 UniRef50_UPI00003844D5 COG0745: Response regulators consisting o... 122 8e-27 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 122 9e-27 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 122 1e-26 UniRef50_C4L340 Two component transcriptional regulator, winged ... 122 1e-26 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 122 1e-26 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 122 1e-26 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 122 1e-26 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 122 1e-26 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 122 1e-26 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 122 1e-26 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 121 1e-26 UniRef50_A9BP07 Two component transcriptional regulator, winged ... 121 1e-26 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 121 1e-26 UniRef50_C8NC13 DNA-binding response regulator n=1 Tax=Cardiobac... 121 2e-26 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 121 2e-26 UniRef50_Q16CN7 DNA-binding response regulator PetR, putative n=... 121 2e-26 UniRef50_Q3IDF5 Putative response regulator in two-component reg... 121 2e-26 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 121 2e-26 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 121 2e-26 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 121 2e-26 UniRef50_D0Z2F0 DNA-binding response regulator n=1 Tax=Photobact... 121 2e-26 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 121 2e-26 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 120 3e-26 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 120 3e-26 UniRef50_C0Z4B7 Two-component response regulator n=5 Tax=Firmicu... 120 3e-26 UniRef50_A5N610 Transcriptional regulator n=20 Tax=Bacteria RepI... 120 3e-26 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 120 3e-26 UniRef50_UPI0001C31E43 two component transcriptional regulator, ... 120 3e-26 UniRef50_C1A8B6 OmpR family two-component response regulator n=1... 120 4e-26 UniRef50_A4EGJ5 Two component transcriptional regulator, winged ... 120 4e-26 UniRef50_B8FS42 Two component transcriptional regulator, winged ... 120 4e-26 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 120 4e-26 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 120 4e-26 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 120 4e-26 UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bac... 120 4e-26 UniRef50_B8G179 Two component transcriptional regulator, winged ... 120 4e-26 UniRef50_B2SJA5 Two-component system regulatory protein n=11 Tax... 120 4e-26 UniRef50_B2IFK7 Two component transcriptional regulator, winged ... 120 4e-26 UniRef50_C4RGF6 Two-component system response regulator receiver... 120 4e-26 UniRef50_B8JG70 Two component transcriptional regulator, winged ... 120 5e-26 UniRef50_Q1GLX1 Two component transcriptional regulator, winged ... 120 5e-26 UniRef50_UPI0001B559F0 two-component system, response regulator ... 120 5e-26 UniRef50_D2B5L0 Response regulator receiver protein n=15 Tax=Act... 120 5e-26 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 120 5e-26 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 119 6e-26 UniRef50_Q46SD2 Sensor protein n=11 Tax=Bacteria RepID=Q46SD2_RALEJ 119 6e-26 UniRef50_B1QVC8 DNA-binding response regulator n=9 Tax=Bacteria ... 119 7e-26 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 119 7e-26 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 119 7e-26 UniRef50_A0NNN8 DNA-binding response regulator n=1 Tax=Labrenzia... 119 7e-26 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 119 7e-26 UniRef50_D0XTW3 Two component transcriptional regulator, winged ... 119 8e-26 UniRef50_C9ZA01 Putative two-component system response regulator... 119 8e-26 UniRef50_B0SB02 Sensor protein of a two-component response regul... 119 1e-25 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 119 1e-25 UniRef50_Q1YN14 Putative transcriptional regulator n=1 Tax=Auran... 119 1e-25 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 119 1e-25 UniRef50_D1U362 Two component transcriptional regulator, winged ... 119 1e-25 UniRef50_B5EQN9 Two component transcriptional regulator, winged ... 119 1e-25 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 118 1e-25 UniRef50_A6G4N0 DNA-binding response regulator n=1 Tax=Plesiocys... 118 1e-25 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 118 1e-25 UniRef50_D0RRP4 Protein PetR n=1 Tax=alpha proteobacterium HIMB1... 118 1e-25 UniRef50_C0D718 Putative uncharacterized protein n=1 Tax=Clostri... 118 1e-25 UniRef50_C9XPS7 Putative uncharacterized protein n=3 Tax=Clostri... 118 1e-25 UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostr... 118 2e-25 UniRef50_B3PFT8 AbfR arabinofuranosidase two component system re... 118 2e-25 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 118 2e-25 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 118 2e-25 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 118 2e-25 UniRef50_O32192 Transcriptional regulatory protein cssR n=10 Tax... 118 2e-25 UniRef50_B8IIA5 Two component transcriptional regulator, winged ... 117 2e-25 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 117 2e-25 UniRef50_Q2S3D0 Alkaline phosphatase synthesis transcriptional r... 117 2e-25 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 117 2e-25 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 117 2e-25 UniRef50_A9KX94 Two component transcriptional regulator, winged ... 117 3e-25 UniRef50_A3Y9U3 Response regulator protein n=1 Tax=Marinomonas s... 117 3e-25 UniRef50_D1AFR9 Two component transcriptional regulator, winged ... 117 3e-25 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 117 3e-25 UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec... 117 3e-25 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 117 3e-25 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 117 3e-25 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 117 3e-25 UniRef50_A7HMZ4 Two component transcriptional regulator, winged ... 117 3e-25 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 117 3e-25 UniRef50_C8R030 Two component transcriptional regulator, winged ... 117 3e-25 UniRef50_A6M2A3 Two component transcriptional regulator, winged ... 117 3e-25 >UniRef50_P38684 TorCAD operon transcriptional regulatory protein torR n=165 Tax=Gammaproteobacteria RepID=TORR_ECOLI Length = 230 Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust. Identities = 230/230 (100%), Positives = 230/230 (100%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN Sbjct: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI Sbjct: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE Sbjct: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC 230 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC Sbjct: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC 230 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 111/230 (48%), Positives = 149/230 (64%), Gaps = 9/230 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 HHI++VED+PV + L +Y +EGY VS G +R++ Q+VDLILLDI LP +GL Sbjct: 4 HHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDGL 63 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L R +R +S VG+I+VTG+ D +DRIV LEMGADDYVTKP +REL+ R KNLL R Sbjct: 64 QLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLS 123 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 AR+A +N FAG+ L++ R L DG ++LTR E+E+L F + PG +++R+ Sbjct: 124 AREAS--EDENQKSFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMTRDN 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 LL +S R P RTVDVL+ RLR K+ AD ++T HG GY A Sbjct: 182 LLDYVSHRDWA-PSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFA 230 >UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Roseovarius RepID=A3W0Y1_9RHOB Length = 233 Score = 202 bits (513), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 110/230 (47%), Positives = 145/230 (63%), Gaps = 11/230 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HIVI+EDEPVT+ L Y GYTV+ S ++ + DL+L+DI L ++GL Sbjct: 6 HIVIIEDEPVTRTTLAEYLRSHGYTVTAFDSAEKADPMLASDRADLLLVDITLDGKDGLQ 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 +TR R RS +GIIL T SD +DRIVGLE+GADDYV KP REL+ R+KNLL R Sbjct: 66 ITREQRARSDIGIILTTSLSDDVDRIVGLELGADDYVCKPFNRRELLARIKNLLRRT--- 122 Query: 124 RQAQPHTQDNCYRFAGYCLN-VSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +AQ RF GY +R + DGEPI++TRAE+E+L + +PGE+L RERL Sbjct: 123 -EAQRRFSRQNVRFHGYAFAFATRQLIAPDGEPIRITRAEFEVLAELLRHPGEVLGRERL 181 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + +++ R+ ++PD RTVDV+IRRLR KL D + T HGEGY A Sbjct: 182 MTVITHRQ-QHPDTRTVDVIIRRLRTKLEEDASAPRFITTAHGEGYVFTA 230 >UniRef50_C4ZP42 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C4ZP42_THASP Length = 242 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 113/232 (48%), Positives = 153/232 (65%), Gaps = 12/232 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++V+D+ V QAR+ +YF++EGY V + G + VDL+LLDINLP ++GL L Sbjct: 11 LLVVDDDLVAQARMNAYFSKEGYRVLLAGDGESFWRQLAQGEVDLVLLDINLPGQDGLSL 70 Query: 65 TRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R LR R +++GIILVT R+D +D+IVGLE+GADDYVTKP REL+ RVK+LL R Sbjct: 71 ARELRARDASIGIILVTSRNDDVDKIVGLEVGADDYVTKPFNPRELLARVKSLLRR---- 126 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +P + RFAG+ L +SR L +R G+ + LTR E+E+L V +PGEIL R+RL Sbjct: 127 SATRPAETADSLRFAGWVLELSRRRLRDRAGQDVALTRGEFEVLALLVRHPGEILDRDRL 186 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 R +S +P R+VDVL+RRLR KL + L+ T GEGY LAADV Sbjct: 187 SRAVSGHDW-SPQDRSVDVLVRRLRAKLDDPARTDSLIATIRGEGYRLAADV 237 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 108/236 (45%), Positives = 155/236 (65%), Gaps = 9/236 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MPH I++VED+PV++A L YF +EGY VS + + L + ++ + + L+LLDI LP ++ Sbjct: 8 MPH-IMVVEDDPVSRALLVGYFEKEGYRVSASDNADDLLQRVEQERIALVLLDIRLPGKD 66 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL LTR LR S VGIILVT R D IDRIVGLE+GADDYVTKP REL+VR +NLLWR+ Sbjct: 67 GLTLTRELRAASRVGIILVTARDDEIDRIVGLELGADDYVTKPFNPRELLVRARNLLWRV 126 Query: 121 -DLARQAQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 A + C+RF G+ LN R + DG +L + E+++L+A +++ G++LS Sbjct: 127 AQCAGSETREAEQGCFRFEGWTLNPHKRQLVSPDGRIERLPQGEFKLLMALLSHAGQVLS 186 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 R++L+ + R P+ RTVDVL+ R+R KL + L++T HG GY A ++ Sbjct: 187 RDQLMDAIHDREW-TPNDRTVDVLVGRVRRKLDDNPADPRLILTAHGAGYLFAGEL 241 >UniRef50_Q21BK9 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21BK9_RHOPB Length = 242 Score = 196 bits (497), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 108/232 (46%), Positives = 147/232 (63%), Gaps = 9/232 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I IV+DEP+ Q+ L SYF G+ V + LR +M + +D ILLDI LPD +GL L Sbjct: 14 IAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRLPDGDGLTL 73 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R +R S V +IL+T R++ DRI+GLE+GADDYVTKP RE++ RVK +L R Sbjct: 74 MRDIRADSDVPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRRTRAV- 132 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 A P RFAG+CL++ H L GEP++LT AE+E+L A V +PG I+SR LL Sbjct: 133 -ADPGRGKRLRRFAGWCLDLENHRLTSASGEPMRLTSAEFELLAALVRHPGRIMSRNDLL 191 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 ++S+R ++ D RTVDVL+ RLR K+ AD ++VT++G GY A V Sbjct: 192 DVMSSREWDSND-RTVDVLVGRLRRKIEADPGKPQIIVTEYGLGYVFAEKVA 242 >UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 Tax=Gammaproteobacteria RepID=ARCA_ECO57 Length = 238 Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 99/233 (42%), Positives = 150/233 (64%), Gaps = 8/233 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI+IVEDE VT+ L+S F EGY V GA + +I+ ++L+++DINLP +NGL+ Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR-IDL 122 L R LRE++ V ++ +TGR + +D+I+GLE+GADDY+TKP REL +R +NLL R ++L Sbjct: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 Query: 123 ARQAQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 ++ Y+F G+ L++ SR + DGE KL R+E+ ++ F NPG+I SR Sbjct: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAADV 229 LL+ ++ R ++ P RTVDV IRR+R + +++ T HGEGY D+ Sbjct: 185 LLKKMTGRELK-PHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 >UniRef50_A0L527 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L527_MAGSM Length = 250 Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 107/243 (44%), Positives = 146/243 (60%), Gaps = 14/243 (5%) Query: 1 MP--HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPD 58 MP H I+IVED+ VT+A L YF GY ++ ++ +DL+LLDINLP Sbjct: 1 MPQRHEILIVEDDKVTRALLSGYFNNAGYRTHAAEDARSMQRVLNGGGIDLVLLDINLPG 60 Query: 59 ENGLMLTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 +GL +T+ LR E + +GIILV+ RS+ +DRI+GLE+GADDYV KP REL+ RVK LL Sbjct: 61 RDGLSITQNLRAESAELGIILVSSRSEEVDRIIGLELGADDYVVKPFNERELLARVKVLL 120 Query: 118 WRIDLARQAQPHTQD----NCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTN 172 RIDL + +D YRF + L+ S R RDG ++LT E+ +L+AFV Sbjct: 121 RRIDLIKHYANSCRDLDELGSYRFDHWTLSHSARQVYHRDGRQVELTNGEFRLLLAFVNR 180 Query: 173 PGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 G SR++LL +S R +P+ RT+DV++ RLR KL D LL+T HG GY Sbjct: 181 AGRAQSRDQLLDAVSNREW-SPNDRTIDVMVNRLRRKLEVDARDPKLLITIHGVGYQFTP 239 Query: 228 DVC 230 +V Sbjct: 240 EVV 242 >UniRef50_B6ITF9 TorCAD operon transcriptional regulatory protein TorR n=1 Tax=Rhodospirillum centenum SW RepID=B6ITF9_RHOCS Length = 241 Score = 176 bits (445), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 148/232 (63%), Gaps = 9/232 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IVEDEP T+A L +YF + G+ ++ +G RE + Q DL+LLDI LPDE+G + Sbjct: 10 VLIVEDEPATRALLAAYFHEAGFLIAEAENGRQTREALLRQPPDLVLLDIELPDEDGFSI 69 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R++RE S VGII+VT R++ DR+ GLE G DDYVTKP REL+ R +NLL R ++ Sbjct: 70 ARSIREISNVGIIIVTNRANEDDRVFGLETGGDDYVTKPPNPRELLARARNLLRRTHPSK 129 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + RF G+ ++++R L + +G+ I++TR E+E+L V + G +++R++L+ Sbjct: 130 MRR--AEGTVRRFGGWTMDLARRRLIDPEGQEIRVTRGEFELLALLVRSGGRVVTRDQLI 187 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADVC 230 +S NP+ RT+DVL+ RLR K+ S L++T+ G GY L DV Sbjct: 188 DAVSGTD-RNPNDRTIDVLVSRLRRKMCDTGVSPRLILTEKGLGYRLGVDVT 238 >UniRef50_A6VRR3 Two component transcriptional regulator, winged helix family n=2 Tax=Gammaproteobacteria RepID=A6VRR3_MARMS Length = 243 Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 101/231 (43%), Positives = 145/231 (62%), Gaps = 9/231 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+D V + L+SYF +EGYTVS + +++ Q DLILLDI LP ++GL Sbjct: 7 KILVVDDSSVIRETLESYFAEEGYTVSGADTAEAAEQLLSEQEFDLILLDIRLPGKDGLT 66 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 LTR LR RS VGIILVTG+ D IDRI+GLE GAD+YV KP RE++ R KNL+ R+ Sbjct: 67 LTRELRSRSEVGIILVTGKQDDIDRIIGLECGADEYVCKPFNAREVLARGKNLIRRVRNQ 126 Query: 124 RQ-AQPHTQDNCYRFAG-YCLNVSRHTLERDGEPI-KLTRAEYEMLVAFVTNPGEILSRE 180 R+ A+ ++ +R G + L+ SR L + + +LT E+++L+A N G L+R+ Sbjct: 127 RELAKKPIEEPVFRTIGTWQLDTSRRVLLKSDRSVSQLTEGEFQLLLALKANEGVALTRD 186 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 +L+ + R D RT+DVLI R+R KLS D +++T HG GY L+ Sbjct: 187 QLMDRIKNRTWNATD-RTIDVLIGRIRRKLSEDPHCPQMIITVHGVGYLLS 236 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 139/235 (59%), Gaps = 9/235 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P HI++V+DEP + L Y +G+ +S S AG R ++ N+ D+ L+DI +P E+G Sbjct: 10 PVHILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDG 69 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L LTR L E + +IL+T R + DRI+GLE+GADDYVTKP E RELV R++++L R Sbjct: 70 LSLTRHLIETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRA- 128 Query: 122 LARQAQPHTQDNCYRFAGYCLN-VSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R +D Y F G+ L+ + R + DG + ++ AE+ ML AF+ +P ++L R+ Sbjct: 129 -GRAPAVDAEDAFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVLDRD 187 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 RLL ++ R D R VD + RLR K+ AD + T G GY AADV Sbjct: 188 RLLDLVQGREAHLFD-RAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRFAADVA 241 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 141/238 (59%), Gaps = 11/238 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P HI++V+D+P +A L Y + G+ A G+ + +++ DL++LD+ LP ++G Sbjct: 4 PEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI- 120 L L R LR RS + +I++T D DRI+GLE+GADDYV KP RELV R++ +L R Sbjct: 64 LTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRAR 123 Query: 121 ---DLARQAQPHTQDNCYRFAGYCLN-VSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 + +A+P RFAG+ L+ V RH + DG + L+ AEY +L F+ P + Sbjct: 124 ALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRV 183 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 +SR++LL + R E D R++DVL+ RLR +L ++ T G+GY+LA DV Sbjct: 184 MSRDQLLDLTQGRAAEAFD-RSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATDV 240 >UniRef50_Q5MDG2 Aerobic respirator control protein A (Fragment) n=161 Tax=Bacteria RepID=Q5MDG2_ECOLX Length = 207 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 82/196 (41%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 19 QSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIIL 78 +S F EGY V GA + +I+ ++L+++DINLP +NGL+L R LRE++ V ++ Sbjct: 1 KSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMF 60 Query: 79 VTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR-IDLARQAQPHTQDNCYRF 137 +TGR + +D+I+GLE+GADDY+TKP REL +R +NLL R ++L ++ Y+F Sbjct: 61 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKF 120 Query: 138 AGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDL 196 G+ L++ SR + DGE KL R+E+ ++ F NPG+I SR LL+ ++ R ++ P Sbjct: 121 NGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELK-PHD 179 Query: 197 RTVDVLIRRLRHKLSA 212 RTVDV IRR+R + Sbjct: 180 RTVDVTIRRIRKHFES 195 >UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=Rhodobacteraceae RepID=A8LR92_DINSH Length = 234 Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 136/228 (59%), Gaps = 7/228 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M HI+IVED+ T+ RL +Y ++GY VS + + + + + +L+L+DINL ++ Sbjct: 1 MTGHILIVEDDRTTRMRLAAYLREQGYRVSEAENAEQMEQTLHDDPAELLLVDINLDGKD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL +TR R S VGIIL+T R D++D+IVGLEMGADDYVTKP + REL RVKNLL RI Sbjct: 61 GLTITREQRAVSRVGIILLTARDDQVDKIVGLEMGADDYVTKPFDKRELAARVKNLLARI 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 QA P + F + + R L L++ E++++ A +PG+ LSR Sbjct: 121 TDIGQA-PQGAHAVHDFGPWRFDRIRRRLISAARIEPLSKQEFDVMTALADHPGQTLSRA 179 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 R+ M+ R + R +DV++ RLR K+ D ++T+HG+GY Sbjct: 180 RIAEMI-GRPAGRGNNRMIDVVVGRLRKKVEKDPARPEWILTEHGKGY 226 >UniRef50_A0LA52 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=A0LA52_MAGSM Length = 252 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 96/237 (40%), Positives = 141/237 (59%), Gaps = 20/237 (8%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI+IVED+ + L Y TQ G+ S G+ LRE M DL+++D+ LP E+GL Sbjct: 13 HILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRARPDLVVMDLMLPGEDGLT 72 Query: 64 LTRALRERST---VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 LTR LR +T + II++T R + DRI+GLEMGADDY+ KP REL+ R+ +++ R Sbjct: 73 LTRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVMRRA 132 Query: 121 DLARQAQPHTQDNC-----YRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPG 174 +++P T+ + YRF+G+ L++ SR DGEPI L+R EYE+L F+ NP Sbjct: 133 ----RSEPVTKSDSSPVKGYRFSGWYLDIASRKLSAPDGEPITLSRKEYELLNIFLQNPQ 188 Query: 175 EILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD------LLVTQHGEGYFL 225 +L+R+ ++ M R +P R +DV I RLR +L D ++ T G+GY L Sbjct: 189 TLLNRDAIM-MRYGGREASPFERGIDVQIGRLRKRLQYDNADPQEMIKTVWGQGYML 244 >UniRef50_Q2W9M0 Response regulator n=2 Tax=Alphaproteobacteria RepID=Q2W9M0_MAGSA Length = 250 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 140/229 (61%), Gaps = 8/229 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 ++++ED+PVT++ + YF+ EG+ V AS A R +++++ VDL+ +DINLPD NG+ Sbjct: 20 SLIVLEDDPVTRSMIGRYFSNEGFEVREAASAAECRVLLKDRDVDLLFVDINLPDANGIS 79 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 ++ +R +S VGII VT +DR+VGLE+ DDYVTKP+ LREL+ R + LL R Sbjct: 80 FSQEIRAKSPVGIIFVTQLDSELDRVVGLEVAGDDYVTKPINLRELMARSRALLRR--RK 137 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + N F Y L+++R L + G+ I LTR E+++L A V G L R+ L Sbjct: 138 LDREQVERRNVVAFGAYILDLTRRELSKSGQQIVLTRGEFDLLAALVEAEGRPLYRDYLA 197 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 ++S+R E D RTVD L+ RLR KL+ + L+VT G GY A Sbjct: 198 EVVSSRSGEG-DARTVDSLVSRLRRKLAHPDGGSALIVTVTGIGYRFGA 245 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 139/241 (57%), Gaps = 16/241 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI +++DE L +Y G+ V+ +G L +M + DL+LLD+ LP E+G Sbjct: 6 HIAVLDDEIDITQLLANYLQSHGFRVTQLHNGPSLMALMDSDPADLVLLDLGLPGEDGFS 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI--D 121 + R +RE G+++VTGR D +D++VGLE+GADDYVTKP +LRELV RVK +L R+ D Sbjct: 66 IARRMRENWRCGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVLRRLAPD 125 Query: 122 LARQAQPHTQDNC-------YRFAGYCLNVSRHTLER-DGEPIKLTRAEYEMLVAFVTNP 173 A A P + RFAG+ L+++ +L G+ + LT E+++L AF +P Sbjct: 126 DAPVAVPASSRPAGLASADRLRFAGWQLDLAARSLTNPQGQNVALTGGEFDLLCAFARHP 185 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 G +LSR+ LL R +P RT+DV + RLR K+ AD ++ + G GY L Sbjct: 186 GRVLSRDFLLEQTRGREA-SPFDRTIDVQVGRLRKKIEADPDEPQIVKSVRGAGYILVPP 244 Query: 229 V 229 V Sbjct: 245 V 245 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 138/237 (58%), Gaps = 10/237 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 +P ++IV+D+P +A L Y G G +R M Q DL++LD++LP EN Sbjct: 25 LPIRLLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGEN 84 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL--W 118 GL L R +RE S + +I++T R++ DR+VGLE+GADDYVTKP E+RELV R+ +L Sbjct: 85 GLTLCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRS 144 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R D+ R A P + RFA + LN + R ++ + + L+ AE+ +L+ F+ +P +L Sbjct: 145 RADVRRPA-PAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRVL 203 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 RE L+ R ++ D R++D+L+ RLR KL D L+ T GEGY V Sbjct: 204 DREMLINTARGRDLDVFD-RSIDLLVSRLRQKLRDDPRDSALIRTVRGEGYVFTGTV 259 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 139/229 (60%), Gaps = 9/229 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H+++V+D+P + L Y + V+V A G + + +++ ++DL++LD+ +P E+G+ Sbjct: 8 HVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGVQ 67 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LR RS + I +V+G+ D DR++ LE+GADDY+TKP REL+ RV+ LL R Sbjct: 68 IARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGAT 127 Query: 124 RQAQPHTQD-NCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A +D YRF+G+ LNV +R + G P++LT E+ +L AF+ PG +LSR++ Sbjct: 128 APATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRVLSRDQ 187 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 LL S+R ++ R++DV I RLR K+ D + T G GY L Sbjct: 188 LLE--SSRLYDDVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVL 234 >UniRef50_B8IVD0 Two component transcriptional regulator, winged helix family n=10 Tax=Alphaproteobacteria RepID=B8IVD0_METNO Length = 245 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 144/240 (60%), Gaps = 13/240 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P HI+I +D+P + L Y EG+ VS SG +R+ + ++ +DL+LLD+ L E+G Sbjct: 4 PPHILITDDDPRIRQMLSRYLESEGFRVSTAESGTAMRKALASEKIDLVLLDLVLAGEDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI- 120 L L R +R S VGII+VTGRSD ID +VGLE+GADDY+ KP +LRE++ R +++L R+ Sbjct: 64 LELAREIRASSRVGIIMVTGRSDIIDMVVGLEVGADDYIAKPFQLREVLARTRSVLRRLQ 123 Query: 121 -----DLARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPG 174 + A+ P ++ F G+ L++SR L +G+ + LT E+++L A +PG Sbjct: 124 PSASTETAKAVGPSSRAEVIGFEGWRLDISRRELMSPEGQEVPLTTGEFDLLAAMAKHPG 183 Query: 175 EILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 +LSR+ L+ + R + D R++D + RLR KL AD L+ + G GY A + Sbjct: 184 RVLSRDMLMDLTRGREWDALD-RSIDAQVVRLRRKLEADPKNPKLIKSVRGAGYVFAGRI 242 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 HI IV+D P + + Y TQEGY ++V A G LR ++ DLI+LD+ +P E+GL Sbjct: 5 QHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDGL 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L R +R RS ++ ++ R++ +D I+GLEMG DDY+ KP REL+ RVK LL R Sbjct: 65 SLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRATP 124 Query: 123 ARQAQPHTQDNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A + + RF + LN R L DG + L+ E+ +L A + PGEI++R+ Sbjct: 125 ASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRDE 184 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 LL +S R E D R++D I RLR K+ D + T G GY Sbjct: 185 LLNKVSGRASEPFD-RSIDNQISRLRRKIEPDPKNPIYIRTHWGGGY 230 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 154 bits (389), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 129/228 (56%), Gaps = 7/228 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++VED+ T++ + Y G VS A G + IM + VDLI++D+ LPDE+GL Sbjct: 16 SILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGLS 75 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R +R RS V II++T R + IDRIVGLEMGADDY+ KP REL+ R+ +L R A Sbjct: 76 LCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQASA 135 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERD-GEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 A + C+ F G+ ++ L G + LT AE+++L AF G +LSRE L Sbjct: 136 LNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSREVL 195 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 L + + D R++DVL+ R+R K+ AD ++ T GY Sbjct: 196 LELTQGPNCGSFD-RSIDVLVSRIRRKIEADPADALMIKTVRSGGYMF 242 >UniRef50_A4TVF9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TVF9_9PROT Length = 252 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 132/227 (58%), Gaps = 9/227 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +V+++D+PVT++ + YF+ EG+ V S A R +++ DL+ +DI+LPD NG+ Sbjct: 19 KLVVLDDDPVTRSMIARYFSDEGFHVREAPSAAECRTLLKASPPDLLFVDIHLPDANGIT 78 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + +R S VGII VT R IDR+VGLE DDYVTKP+ LREL+ R ++LL R + Sbjct: 79 FAQEIRASSQVGIIFVTQRDSEIDRVVGLESAGDDYVTKPINLRELMARTRSLLRRSKQS 138 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 QP + + F Y ++++R L + G+ I LTR E+++L A V G L R+ L Sbjct: 139 -SGQP-SHRSVITFGAYVMDMTRRELSSKGGKLIPLTRGEFDLLAALVEANGRPLYRDFL 196 Query: 183 LRMLSARRVENPD-LRTVDVLIRRLRHKLSA-----DLLVTQHGEGY 223 +++ R LRTVD L+ RLR KL L++T G GY Sbjct: 197 AEVVNNRTGGGEGALRTVDTLVARLRRKLKQAEGDETLIITMPGIGY 243 >UniRef50_C3JXL3 Oxidative stress related two component system, transcriptional regulator n=3 Tax=Pseudomonas RepID=C3JXL3_PSEFS Length = 247 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 135/232 (58%), Gaps = 8/232 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++V+D + L +Y + + V AG+ ++++ Q+ D+++LD+ LPD +G L Sbjct: 12 VLVVDDHRKIREPLATYLRRHTFDVRTAEDAAGMWQLLKTQAFDVVVLDVLLPDGDGFEL 71 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL-A 123 L RS +IL+T R + DR+ GL++GADDYVTKP E RELV R+ ++L R Sbjct: 72 CNQLHRRSNTPVILLTARDNAADRVRGLDLGADDYVTKPFEPRELVARIHSVLRRQSRNT 131 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEP-IKLTRAEYEMLVAFVTNPGEILSRERL 182 A P + YRF G+ +V+ TL RDG P ++L+ AE +L F+ +P +L RERL Sbjct: 132 GPAAPRSGARAYRFGGWHFSVTGATLRRDGSPAVQLSTAESRLLQVFLAHPNTLLPRERL 191 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 + + +A + D R +D + RLR KL + +LL T G GY LAA+V Sbjct: 192 IDLTAAADSDVSD-RAIDRQVSRLRRKLAQGDAAQELLRTIWGGGYLLAAEV 242 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 132/234 (56%), Gaps = 10/234 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H I IV+D+ ++ L Y + G++ + EI + LI++DI LP NGL Sbjct: 5 HTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNGL 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID- 121 L R LR STV +I +T D DRIVGLE+GADDY++KP E REL+ R++ +L R + Sbjct: 65 ELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTEG 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 AR+ QP T +FAG+ L+ S RH + DG + L+ EY +L F+ NP +LSR+ Sbjct: 125 GARRDQPET--TPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRVLSRD 182 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 LL R D R++DV I RLR +L L+ T G+GY LA DV Sbjct: 183 ELLERTQGRNAVPYD-RSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATDV 235 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 132/235 (56%), Gaps = 15/235 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI+IVED+P L G+ S SGA + +M Q DLI+LD LP E+G Sbjct: 14 HILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDGFS 73 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LR +V I+++T + IDRI+GLE+GADDYVTKP REL+ R+K++L R A Sbjct: 74 ICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASYA 133 Query: 124 RQAQPHTQDNC---YRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 H Q+ F+G+ ++ SR + DG + +T AE+++L+AF NP ++L+R Sbjct: 134 -----HHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTR 188 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAADV 229 E+LL M A P R++D I R+R K+ +L + T GY A+ V Sbjct: 189 EQLLSMTHAGSA-GPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKV 242 >UniRef50_UPI00016A3BF9 Response regulator n=3 Tax=pseudomallei group RepID=UPI00016A3BF9 Length = 240 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/233 (41%), Positives = 135/233 (57%), Gaps = 10/233 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P I++VED+P+T+ L Y G+ + + + A R+ ++ S D++LLDINLPD +G Sbjct: 5 PGRILVVEDDPITRTMLARYLGGAGFDLLTSGNVAQARQALRAASADVLLLDINLPDGDG 64 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + L R LRE ST GII VT R +DR++GLE DDY+TKP+ LREL+ RV+ LL R Sbjct: 65 ISLARELREHSTAGIIFVTQRDGDLDRVLGLETAGDDYITKPIRLRELLARVRALLRRQR 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPI-KLTRAEYEMLVAFVTNPGEILSRE 180 L R+ P D F + +++ R L G + LT E+++L A V G L+RE Sbjct: 125 LYREIAP--VDTVLTFDRWLIDLRRRELALSGGAVLPLTPREFDLLAALVMVRGTTLTRE 182 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL------LVTQHGEGYFLAA 227 LL ++S +R D RTVD LI RLR K+S D + T G GY L A Sbjct: 183 YLLEVVS-KRERATDSRTVDTLIARLRRKMSDDAGGMRCPIGTVAGIGYRLDA 234 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 133/235 (56%), Gaps = 16/235 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IV+D+ + + Y + G V+V A G +R + VD+I+LDI LP ++GL+ Sbjct: 6 HVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPGDDGLV 65 Query: 64 LTRALR--ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L R LR + T I+L+T RSD DRIVGLEMGADDY+ KP REL+ R+K +L R Sbjct: 66 LCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRR-- 123 Query: 122 LARQAQPHTQ----DNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 R P+ Q F + L+ + RH L+ G + L+ AEY +L F+ +P + Sbjct: 124 -TRMLPPNLQVTEVAQLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLLRVFLDHPQRV 182 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 LSR++LL + R E D R++D+L+ RLR +L D + T EGY A Sbjct: 183 LSRDQLLNLTQGREAELFD-RSIDLLVSRLRQRLRDDAREPTYIKTVRSEGYVFA 236 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 139/235 (59%), Gaps = 10/235 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI+IV+D+ + L SY + G S+ A+G +R +++ SVDLI+LD+ LP E+GL Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 64 LTRALR--ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L R LR + T+ ++++T R++ DRI+GLEMGADDY++KP +REL R++++L R Sbjct: 66 LCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR 125 Query: 122 -LARQAQPHTQDNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 L Q F + L+ + RH L+ G + L+ AEY +L F+ +P +L+R Sbjct: 126 MLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVLTR 185 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 ++LL + R + D R++D+LI RLR +L D + T EGY +A V Sbjct: 186 DQLLNLTQGRDADPFD-RSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAAV 239 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 143/233 (61%), Gaps = 10/233 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IV+D+ + L + + G VS+ G + ++M +VDLI+LD+ LP ++G+ Sbjct: 82 HVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGIE 141 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R S V II++T +D D+I+GLE+GADDY+ KP + REL+ R++ +L R++ Sbjct: 142 ICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRLENN 201 Query: 124 RQ-AQPHTQDNCYRFAGYCLNVSRHTLERDGEP-IKLTRAEYEMLVAFVTNPGEILSRER 181 R ++P T + YRFAG+ L+ +R L + ++LT AE+ +L AFV + ILSR++ Sbjct: 202 RAPSRPVT--HSYRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHILSRDQ 259 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L+ M + V D R+VD+LI RLR KL+ D L++T GY +V Sbjct: 260 LMEMAGNQAVYGYD-RSVDILISRLRRKLNDDSRSPKLILTIRNGGYQFGHEV 311 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 128/232 (55%), Gaps = 9/232 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IVED+ L T+ G V + +GA + + NQ DLI+LDI LP ENGL Sbjct: 28 HVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGENGLS 87 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LR + V ++++T + IDRI GLE+GADDYVTKP REL R++ LL R A Sbjct: 88 ICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRTAYA 147 Query: 124 RQAQPHTQDNCYRFAGYCLN-VSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + ++ RF G+ L+ V R + + T E+++L+AF NPG +LSRE L Sbjct: 148 PDERDRSK--VLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGRVLSREEL 205 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L + A + P R+VDV + R+R K+ D LL T GY A V Sbjct: 206 LSVTHA-GLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIFTATV 256 >UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV27_9GAMM Length = 238 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 136/232 (58%), Gaps = 9/232 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI++V+D+ ++ ++++ Q G+TV G GL + VDLI+LD+ LPDE+GL Sbjct: 8 HILVVDDDLRLRSLVEAHLRQVGFTVDGVRDGQGLDHKLHGGEVDLIILDLGLPDEDGLQ 67 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + LR I+++T R D +DRI+GLEMGADDY++KP REL+ RV+ +L R Sbjct: 68 ICQRLRLTYDTPILILTARGDEVDRILGLEMGADDYLSKPFHPRELIARVQAILRRTKPM 127 Query: 124 RQAQPHTQDN--CYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + H + C + A + ++ R + GEP++L++A+++ L + + G+ LSRER Sbjct: 128 NRGRQHADEPEICMKGA-FVVDTRRQKILWRGEPLELSQADFQTLSTLIKHEGQPLSRER 186 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQH-----GEGYFLAAD 228 L+ +LS R D R++D+ I RLR L + QH G GY ++ Sbjct: 187 LM-LLSRGRTYASDDRSIDMQISRLRKLLDSKTDGAQHIRTVWGSGYMFLSE 237 >UniRef50_A3JW86 DNA-binding response regulator n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW86_9RHOB Length = 242 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 11/231 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I +VED+ + +A + Y Y V + + + + N VD+ L+D+ LPD +GL + Sbjct: 8 IALVEDDGLARAEICEYLRYNNYEVLSAGTQSDFEKKIANADVDIFLIDLGLPDGDGLDV 67 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI---- 120 R L+ R+ GII+++GRSD ID++V LE+GADDY+TKP RE++ RV +LL R+ Sbjct: 68 IRGLKGRANCGIIVLSGRSDDIDKVVCLEVGADDYITKPFNPREMLARVHSLLRRLENKN 127 Query: 121 DLARQAQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + A + T D+ F + L+ +R + D LTR+E+++LV F+ NP LSR Sbjct: 128 ETADLSTESTTDSIISFLDWSLDTNTRQLFDADNIETPLTRSEFDLLVFFLKNPNRALSR 187 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFL 225 E L+ L D R +D L+ RLR KLS + + T HG GY Sbjct: 188 ETLIANLRGSNWAGYD-RAMDGLVSRLRGKLSKGNSSINYIKTMHGVGYLF 237 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 142/235 (60%), Gaps = 9/235 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +HI+I++D+ + Y + + + +G +++++++ + DLI+LDI LP +GL Sbjct: 11 NHILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGIDGL 70 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI-- 120 L + +R+ T+ II+++ + DR+ GLE+GADDY++KP REL+ RVK L R Sbjct: 71 DLCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRTQG 130 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 DL+++ + + F + L+ + H+L +RD I L++ EYEML+ F+ +PG IL+R Sbjct: 131 DLSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRILNR 190 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 ++L+ +L + ++ D RT+DVLI RLR K+ D LL+T G GY V Sbjct: 191 DQLMDLLYDKDCDSQD-RTIDVLIGRLRKKIEQDPRNPQLLLTIRGGGYQFKTKV 244 >UniRef50_C4TUI5 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Yersinia RepID=C4TUI5_YERKR Length = 235 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 135/234 (57%), Gaps = 11/234 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 PH +++++D+ ++ L YFT+ + V G L ++ +SVDL++LD+ LP ++G Sbjct: 3 PHTLLVIDDDEEIRSLLTEYFTKANFRVLSLPDGEHLLATLKQESVDLVILDVMLPGDDG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L R R+ S V II++T SD D+++GLE+GADDY+ KP REL+ RVK LL R Sbjct: 63 FTLCRKARQVSAVPIIMLTAASDESDKVIGLELGADDYLAKPFSARELLARVKALLRRNQ 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTL---ERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + + P T+ F G+ L++ R L ++ EP L+ E+ +L F+ +P +IL Sbjct: 123 IVQ--SPGTEARFLCFNGWKLDLVRRELIDPQKQSEP--LSGIEFTLLSLFLRHPNQILD 178 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAADV 229 R++ + ++ RR NP R +DV I RLR +L LL T +GY L DV Sbjct: 179 RDQ-ISEITRRRENNPLERGIDVQISRLRQRLQDSQRLLLRTLRNQGYMLCCDV 231 >UniRef50_B8IIA6 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IIA6_METNO Length = 238 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP I++VEDE + ++ Y T+ G+ V A G LR + D+++LDI LP EN Sbjct: 1 MPSTIIVVEDEADLRQAVEEYLTEAGFRVIGAADGRELRAAVDQAEPDVVILDIALPAEN 60 Query: 61 GLMLTRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 GL L R LR R S G+I T + RI GLE+GADDYV KP +LREL+ RV+++L R Sbjct: 61 GLSLARWLRSRGSKAGLIFATAAQNATHRIAGLELGADDYVVKPYDLRELLGRVRSVLRR 120 Query: 120 I--DLARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEI 176 + + L++ R TL + G P+ LT E ++L+AF T P + Sbjct: 121 VIRSTVASPAAPAPARTVAVGLFTLDLDRRTLFDTSGTPVPLTAMEVDLLIAFATRPNRV 180 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD----LLVTQHGEGYFL 225 LSR++L M R + R++D+ I RLR K+ L+ T GEGY Sbjct: 181 LSRQQLRTMAQGYRESDHSDRSIDIRITRLRRKIETGTKPALIQTVRGEGYVF 233 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 134/238 (56%), Gaps = 27/238 (11%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI+IVEDE + L Y + GY ++ G + ++NQ DLILLD+ LP ++GL Sbjct: 3 HILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDGLT 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI--- 120 + R ++E S + II+VT R D IDR++GLE+GADDY+ KP RE+V RVK +L RI Sbjct: 63 ICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRINPP 122 Query: 121 -------DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNP 173 ++A+Q+Q T + LN + + P++LT E+ +L + P Sbjct: 123 LTTGINTNIAKQSQTTTVE---------LNTDNYQATINQHPVELTAIEFNLLNILASAP 173 Query: 174 GEILSRERLL-RMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFL 225 G I SR +L+ R+ RV + RT+D I++LR KL+A +L+ + + GY L Sbjct: 174 GRIYSRSQLIDRVYQDNRVVSE--RTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKL 229 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 136/238 (57%), Gaps = 16/238 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI+IV+D+ + + +Y T+ G V+V G +R + SVDLI+LD+ +P ++GL+ Sbjct: 7 HILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDDGLV 66 Query: 64 LTRALR--ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L R LR + ++++T RSD DRI+GLEMGADDY+ KP REL+ R+K +L R Sbjct: 67 LCRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLRR-- 124 Query: 122 LARQAQPHTQ----DNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 R P+ Q F + L+ + RH +++DG + L+ AEY +L FV +P + Sbjct: 125 -TRMLPPNLQITEAGQLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLLRVFVDHPQRV 183 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L+R++LL + R E + R++D+L+ RLR L D + T EGY + V Sbjct: 184 LNRDQLLSLTQGREAEMFE-RSIDLLVSRLRQHLRDDAREPRYIKTVRSEGYVFSTPV 240 >UniRef50_Q5NY91 Response regulator n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NY91_AZOSE Length = 236 Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 86/211 (40%), Positives = 124/211 (58%), Gaps = 5/211 (2%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+IV+DEP + L+ YF +GY A+ REI VD+ L+DI++P E+GL L Sbjct: 7 ILIVDDEPGVREVLEEYFVAQGYAALCAANAGDAREIAAGSPVDVALVDISMPGEDGLSL 66 Query: 65 TRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 TR LRE + + I+++T +DRIVGLEMGADDYV+KP + REL+ RVK++L R LA Sbjct: 67 TRYLREHYARIAIVMLTSAGTVVDRIVGLEMGADDYVSKPFDPRELLARVKSVLRRTSLA 126 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERD-GEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 A R ++ H L + + ++ E+++L A V NP LSRER+ Sbjct: 127 ASADLGAAR--VRVGRCVFDLGAHRLTDEVANDVPMSPLEFDLLKALVENPNRALSRERI 184 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD 213 L LS +R +P R+VD+ + RLR K+ D Sbjct: 185 LN-LSQQRDMDPFDRSVDLRVMRLRKKIEPD 214 >UniRef50_B1ZLF1 Two component transcriptional regulator, winged helix family n=23 Tax=cellular organisms RepID=B1ZLF1_METPB Length = 291 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 133/242 (54%), Gaps = 20/242 (8%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI +V+DE +A + Y G+ V++ G LR +Q ++ DLI+LD+N+P+E+GL Sbjct: 51 HIAVVDDEADARAMVGDYLRLHGFDVALCEGGRALRAHLQIRTPDLIVLDLNMPEEDGLS 110 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID-- 121 + R ++ RS + II++T + IDR+VGLE+GADDY+ KP ELRELV RV+++L R Sbjct: 111 IVRDMKARSPIPIIMLTATASPIDRVVGLELGADDYLPKPCELRELVARVRSVLRRAQGA 170 Query: 122 -------LARQAQPHTQDNCYRFAGYCLNVSRHTLERD-GEPIKLTRAEYEMLVAFVTNP 173 +P RF L + L D G LTR+E+++L AF +P Sbjct: 171 PPPPPAQPTPAPEPAACARTIRFGTKWLELDALRLRDDAGVEQPLTRSEFDLLKAFADHP 230 Query: 174 GEILSRERLLRMLSARRVENPDL--RTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 LSRERLL + AR +PD R +DV I R+R K+ D + T G GY Sbjct: 231 KRALSRERLLDLADAR---DPDAFDRAIDVRINRIRKKVEPDPANPRFIRTVRGLGYIFR 287 Query: 227 AD 228 D Sbjct: 288 PD 289 >UniRef50_A5VZA1 Two component transcriptional regulator, winged helix family n=27 Tax=Gammaproteobacteria RepID=A5VZA1_PSEP1 Length = 260 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 132/235 (56%), Gaps = 13/235 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+D+ + LQ+Y ++ G+ V A G G R ++ DL++LD+ LPDE+G L Sbjct: 27 ILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGFSL 86 Query: 65 TRALRE---RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 R +R+ ++ V II++T SD DR++GLE+GADDY+ KP REL R+K LL R + Sbjct: 87 CRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRSE 146 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 QA P + F + L+ H L RDGE + L+ A++ +L F+ +P +IL R+ Sbjct: 147 FG-QAAPGS--AVLAFDDWRLDTVSHRLFHRDGEEVILSGADFALLKLFLDHPQQILDRD 203 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADVC 230 + R P R VD+ + RLR +L L+ T G GY LAA VC Sbjct: 204 TIGNATRGRE-PMPLDRIVDMAVSRLRQRLRDTDKPPRLIRTVRGSGYLLAAHVC 257 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 131/235 (55%), Gaps = 12/235 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI++VED+ + Y VSV + ++ + VDLI+LD+ LP E+GL Sbjct: 19 HILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGEDGLS 78 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LR +ST+ I+++T +S+ IDRIVGLE+GADDY+ KP REL+ R++ +L R Sbjct: 79 ICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR---G 135 Query: 124 RQAQPHTQDNCYR--FAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +D R FAG+ L+ R L DG + LT AE+++L A PG +LSR+ Sbjct: 136 SGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSRD 195 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 +LL L+ R P R++DVL+ R+R K+ D ++ T GY +V Sbjct: 196 QLLD-LTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEVS 249 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 129/228 (56%), Gaps = 11/228 (4%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 +IV+D+ + L Y T+ G +R+ + +++ D+++LD+ LP E+GL L Sbjct: 33 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLSLC 92 Query: 66 RALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQ 125 R LR S + I+++T R + DRI+GLE+GADDY+ KP E RELV R++ +L R+ R Sbjct: 93 RWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDERS 152 Query: 126 AQPHTQDNCYRFAGYCLN-VSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 Q T RF + LN V R DG + L+ AE+ +L F+ P +LSRE+LL Sbjct: 153 DQRTT----IRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLD 208 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 R +E D R++D+L+ RLR KL D L+ T GEGY A Sbjct: 209 AARGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFDA 255 >UniRef50_A1B7Z0 Two component transcriptional regulator, winged helix family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B7Z0_PARDP Length = 255 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 133/234 (56%), Gaps = 9/234 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPD-EN 60 P I+ VED+ A L YFT++GY V GA +R + + DL++LD+ LP E+ Sbjct: 23 PQRILFVEDDRKLSAFLCRYFTEQGYLVEAAHDGAAMRRALAAKGFDLVVLDVGLPGRED 82 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G +L R L++ +GI+ ++ R D +DRIVGLE+GADD++ KP E REL+ R++ +L R+ Sbjct: 83 GYVLARELKKERDIGILFLSARQDALDRIVGLEIGADDFLVKPFEPRELLARIRAILRRL 142 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 A A+P + F G+ L++ L + G LT E+ +L PG +LSR Sbjct: 143 P-AGTARPRGEGRRIGFDGWLLDLDARVLRDAQGGVQNLTTQEFNLLSVLAQRPGRVLSR 201 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 ++LL L+ R +P R+VDV+I ++R K+ + + T G GY + + Sbjct: 202 DQLLD-LTVSRHWSPYDRSVDVMIGKIRRKIGDNGPEPRRIRTIRGTGYMFSPE 254 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 129/230 (56%), Gaps = 12/230 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 ++I++DE + L+ F QEG+ VSV G + ++ S D I+LD+ LP +G+ Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L +R++S V II++T + ID+I+GLE+GADDY+TKP REL+ R++ L + Sbjct: 78 LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTL-----IR 132 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 RQ + + + Y+F +++ T+ R E I LT E+++LV + N G + RE + Sbjct: 133 RQEKGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIF 192 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAAD 228 +++ D RT+DV ++ LR KL ++ T+ G GY+ D Sbjct: 193 QLVWGEPC--YDTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_Q212W6 Two component transcriptional regulator, winged helix family n=17 Tax=Alphaproteobacteria RepID=Q212W6_RHOPB Length = 270 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 133/226 (58%), Gaps = 10/226 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+D+P + L Y + + V + AS A LR+ + + +DL++LD+ LPD +GL Sbjct: 36 QILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDGSGLD 95 Query: 64 LTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R LR +R+ + IIL+T + +DRI+GLEMGADDY++KP RELV R++ +L R Sbjct: 96 ACRDLRAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRR--R 153 Query: 123 ARQAQPHTQDNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + P YRF G+ + R ++ G I+LT AE+++L F+ PG +LSR++ Sbjct: 154 SETPAPVGASRAYRFEGFVADPQVRSVVDPTGTAIELTGAEFDLLQVFLDRPGRVLSRDQ 213 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGY 223 LL R + R++DVLI R+R KL +A LL T GY Sbjct: 214 LLDFTRGR--SDTFDRSIDVLISRVRRKLDPSGTARLLKTVRNGGY 257 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 132/231 (57%), Gaps = 10/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M IVI++D+ + ++ Y +G+ S G L +I+Q + DLI+LD+ LPDEN Sbjct: 1 MKKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDEN 60 Query: 61 GLMLTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 GL + + LR + + II++T + D +DRI+GLEMGADDY+ KP REL+ R+ ++ R Sbjct: 61 GLDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRR 120 Query: 120 --IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 ++L+ + +F + N TL++D + I LT E+ +L F+ N + L Sbjct: 121 HEMELSEKVN-EVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPL 179 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 SR++++++ + ++ D R++DV I R+R + D L T+ G GY Sbjct: 180 SRDQIMQLAKGKELDVFD-RSIDVQISRIRKLIEEDPNKPKYLKTKWGFGY 229 >UniRef50_A4U4W5 Two-component transcriptional regulator n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4W5_9PROT Length = 233 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 131/222 (59%), Gaps = 7/222 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+D+ +A + + + GY V AG+R + +DL+LLD+NLPD +G+ L Sbjct: 7 ILVVDDDETVRALIAASAAKAGYRVEQAEDAAGMRAWLATGQIDLVLLDVNLPDGDGISL 66 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 TR LR S V +I+VT R DR +G+E GADDY+ KP+ REL+ RVK++L R R Sbjct: 67 TRDLRAHSDVAVIMVTERGGPDDRALGIETGADDYLAKPVYPRELLARVKSVLDRRAGLR 126 Query: 125 QAQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 A N RFAG+C+++ +R L+ G LT AE+++L V+ G I SR+ L+ Sbjct: 127 GAGTA---NRLRFAGWCMDLTARAVLDTLGRAADLTPAEFDLLHILVSRAGRIQSRDALM 183 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD--LLVTQHGEGY 223 L + E+ R++D+LI RLR KL + L+ T G GY Sbjct: 184 VALGSDDAESGP-RSIDILISRLRKKLGGEDGLIETCRGHGY 224 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 135/236 (57%), Gaps = 14/236 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++ +D+P + Y Q + V + SG +++I++ +D+++LD+ LPDE+GL Sbjct: 6 QILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPDEDGLQ 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R LR RS + II+++ + +++DRI+GLEMGADDYV+KP REL+ R+K++L R A Sbjct: 66 LCRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRR---A 122 Query: 124 RQAQPHTQDN----CYRFAGYCLN-VSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R DN Y F+G+ ++ SR G + LT E+ +L F+ +P +LS Sbjct: 123 RSLPETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPNRVLS 182 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 R+++L + + E P RT+D+ + RLR +L L+ T GY + V Sbjct: 183 RDQILDLTYGKDQE-PFGRTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGYVFCSRV 237 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 131/234 (55%), Gaps = 9/234 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDE 59 M H I+I++D+ QA L+ YF + V+ +G G++ + D+++LDI LPD Sbjct: 1 MTHRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + +R S V +I++T R D+ DRI+GLE+GADDY+ KP REL+ R+K +L R Sbjct: 61 DGFETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRR 120 Query: 120 IDLARQAQPHTQDNCYR--FAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 + +A P + + F ++ + L + G I +T E ++L A +++ G L Sbjct: 121 ATASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPL 180 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 +R+RLL + S R E D R++DV I R+R KL D + T G+GY A Sbjct: 181 TRDRLLDLASGRDFETFD-RSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWA 233 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 133/233 (57%), Gaps = 10/233 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDENGLM 63 I +V+D+ + L++Y + +TV SG L Q VDL++LDI LP ++G Sbjct: 7 IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R+LR +S V +I++T SD +DRI+GLE+GADDY+ KP REL+ R+K +L R++ Sbjct: 67 VCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRMEHT 126 Query: 124 R--QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + P T YRFA + L+ L E L+ A+Y +L+ F+T+PG +L+RE Sbjct: 127 EVVEIAPVTH-RFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGAVLTRE- 184 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L+ + R P R +DV + RLR +L D L+ T G+GY L A V Sbjct: 185 LIAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTASV 237 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 139 bits (349), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 130/238 (54%), Gaps = 12/238 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ--NQSVDLILLDINLPD 58 M +++V+D+ T+ L++Y + Y V V GA + + L++LD+ LPD Sbjct: 10 MTRTLLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPD 69 Query: 59 ENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 +G L R++R +S V II++T +D DRIVGLE+GADDY+ KP REL+ R+K + Sbjct: 70 TDGFTLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHR 129 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLN-VSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R+ L P +FAG+ ++ V R + G+P+ LT ++ +L F + GE L Sbjct: 130 RMQLGAPGAPV---RFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAGETL 186 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 R RL+ R + P R++DV + RLR +L D L+ T G GY +ADV Sbjct: 187 DRARLMEQTRGRDL-GPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVFSADVS 243 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MPH I++V+D+ + L + ++ + V+ R N L++LD+ LP E+ Sbjct: 27 MPH-ILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGES 85 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ R LR S V II++T + DRI+GLE+GADDYVTKP RELV R++ +L R+ Sbjct: 86 GIDFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRV 145 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHT-LERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + YRFAG+ L SR L+ G + LT EY++L+A + P +L+R Sbjct: 146 GENETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTR 205 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 + LL +L R+ P R +DV I RLR KL D ++ T G GY LA V Sbjct: 206 DMLLDLLRGRQA-GPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLAVPV 259 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 132/232 (56%), Gaps = 7/232 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + I++V+D+ +A L+ Y T++G+ V A+ + ++ +S L++LD+ LP E+GL Sbjct: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 MLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR +S + II+VT + + +DRIVGLE+GADDY+ KP REL+ R++ +L R Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 P ++ F + LN+ + R+ EP+ LT E+ +L A V++P E LSR++ Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L+ + R + R++DV I RLR + D + T G GY D Sbjct: 185 LMNLARGREYSAME-RSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 >UniRef50_Q3KB13 Two component Transcriptional regulator, Winged helix family n=33 Tax=Proteobacteria RepID=Q3KB13_PSEPF Length = 245 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 136/236 (57%), Gaps = 16/236 (6%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +HI+IV+D+ + + +Y T+ G +V A G +R ++ +VDLI+LDI LP ++GL Sbjct: 5 NHILIVDDDREIRELVGNYLTKNGLRSTVVADGRQMRSFLEANTVDLIVLDIMLPGDDGL 64 Query: 63 MLTRALR--ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 +L R LR + + I+++T R D+ DRI+GLEMGADDY+TKP REL+ R+ +L R Sbjct: 65 VLCRELRAGKHKAIPILMLTARDDQTDRILGLEMGADDYLTKPFAARELLARINAVLRR- 123 Query: 121 DLARQAQPH----TQDNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 R P+ F + L+ + RH L+ D + L+ AEY +L F+ +P Sbjct: 124 --TRMLPPNLLISETGRLLAFGRWRLDTTARHLLDEDDTMVALSGAEYRLLRVFLDHPQR 181 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 +LSR++LL + R + D R++D+L+ RLR +L D + T EGY + Sbjct: 182 VLSRDQLLNLTQGRDADLFD-RSIDLLVSRLRQRLLDDSREPTYIKTVRNEGYVFS 236 >UniRef50_B6IYL9 Two-component response regulator GltR n=1 Tax=Rhodospirillum centenum SW RepID=B6IYL9_RHOCS Length = 262 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/256 (35%), Positives = 136/256 (53%), Gaps = 31/256 (12%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++VED+ +A + + G+TV SG+ E++ + DL ++D+ LPD +GL + Sbjct: 6 ILLVEDDDAIRALVIRVLSGAGFTVEEAPSGSRAMEVVADTRPDLAIVDLGLPDMDGLAV 65 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R LR+R G+I+++GRSD ++RI+GLE+GADDYV KP E REL+ RVK++L R++ A Sbjct: 66 VRELRQRLRCGVIILSGRSDPMERIIGLEVGADDYVPKPFEPRELLARVKSVLRRLEPAG 125 Query: 125 QAQ------------------------PHTQDNCYRFAGYCLNVSRHTLER-DGEPIKLT 159 + P YRF G+ L+ H L R DG LT Sbjct: 126 PDRPAPPAPAAPAPPLPENTPATAPVGPDGGGPVYRFEGWTLDSRGHMLIRPDGGHEDLT 185 Query: 160 RAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----L 214 E+ +L+A V G +LSR++LL + D R+VDV I RLR K+ D + Sbjct: 186 TGEFTLLLALVERAGRVLSRDQLLDVTHGHNTPAFD-RSVDVQIARLRRKIQRDPDAPPV 244 Query: 215 LVTQHGEGYFLAADVC 230 + T GY AA V Sbjct: 245 IRTVRNAGYLFAARVT 260 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/216 (36%), Positives = 134/216 (62%), Gaps = 6/216 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MPH +++ +DE + + L ++F + +TV++ +GA + ++ +++DL++LD+ L E+ Sbjct: 1 MPHLLLVDDDEDIL-SLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGED 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + +R S V +I++T +D DR+VGLE+GADDY+TKP + REL+ RVK +L R Sbjct: 60 GFSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRT 119 Query: 121 -DLARQAQPHTQDNCYRFAGYCLNVSRHTLER-DGEPIKLTRAEYEMLVAFVTNPGEILS 178 +L P FAG+ L+V+R L D I L+ E+++L+AF + +L+ Sbjct: 120 AELEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQRVLT 179 Query: 179 RERLLRMLSARRVENPDL-RTVDVLIRRLRHKLSAD 213 R++LL + AR + + R++DV + RLRHKL D Sbjct: 180 RDQLLDL--ARGLSHAAFDRSIDVQVSRLRHKLEDD 213 >UniRef50_Q7CXM1 Two component response regulator n=11 Tax=Alphaproteobacteria RepID=Q7CXM1_AGRT5 Length = 237 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 122/231 (52%), Gaps = 16/231 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IV+D+ + LQ + +GY VSV A R M DL++LD+ +P ENGL Sbjct: 17 HLLIVDDDARIRNLLQRFLGDKGYRVSVAGDAAEARRKMVGIRFDLLILDVMMPGENGLS 76 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 LTR+L E +V +IL+T RS+ RI GLE GADDY+ KP + RELV+R+ N+L Sbjct: 77 LTRSLNENKSVPVILLTARSEADSRIAGLEAGADDYLAKPFDPRELVLRINNILR----- 131 Query: 124 RQAQPHTQD-NCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R P T F Y ++ + L R E I+LT E E+++ F G+ + R L Sbjct: 132 RNTSPDTPKIEQIMFGPYSFSIPKRELRRGAETIRLTDREQEIMLLFALRAGDTIPRHEL 191 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 + S RT+DV I RLR K+ D L T G GY L+ D Sbjct: 192 VEAES-----EVGERTIDVQINRLRRKIEDDPANPVYLQTVRGIGYRLSVD 237 >UniRef50_B6R185 Response regulator in two-component regulatory system with EnvZ, OmpR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R185_9RHOB Length = 239 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 132/233 (56%), Gaps = 10/233 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IV+D+ + + GYTV S E++ +DL++LDI LP ENGL L Sbjct: 8 LLIVDDDEEIASLTADFLKDRGYTVFTANSAEEAMELLDTNHIDLMVLDIMLPGENGLTL 67 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI-DLA 123 + +R+ S + II+++ + +RIVGLE+GADDY+ KP REL R+ + R D+ Sbjct: 68 CQRVRQTSKMPIIIISAITGDTERIVGLELGADDYLEKPFNPRELQARIFAIFRRTEDVE 127 Query: 124 RQAQPHTQDNCYRFAGYCLN-VSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 A P Q + F+G+ L+ +RH DG + L+ +E++ L+ FV +P + +SR+ L Sbjct: 128 TAAAPKAQ--RFEFSGWKLDEATRHLTAPDGVLVHLSSSEFDALLTFVKSPQKPISRDTL 185 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAADVC 230 R+L +V++ D R++D+LI RLR KL+ D + T +GY + V Sbjct: 186 GRVLRGAKVDSHD-RSIDILISRLRKKLAQTDPNTDFITTVRHQGYLFSQSVT 237 >UniRef50_C6QH06 Two component transcriptional regulator, winged helix family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QH06_9RHIZ Length = 242 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 137/238 (57%), Gaps = 10/238 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DEP + L++ F +EGY V+ A A R + V L+ LD+ L E+ Sbjct: 1 MTTKILVVDDEPEIRRLLRTCFEREGYAVAEAADAAATRAALNEDIVSLVTLDLALGQED 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL L R +R + V I++V+G+ D +DRIVGLE+GADDY++KP LRE++ RV+++L R Sbjct: 61 GLSLAREIRAKHDVPIVMVSGKGDTVDRIVGLEIGADDYISKPFNLREVLARVRSVLRRH 120 Query: 121 DLARQAQPHTQD---NCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 D +A T Y FAG+ L+ SR + +G +LT AE+ +L F P Sbjct: 121 DGGNRAASTTSSPAHEIYEFAGWSLDATSRELKDENGVSRELTTAEFNLLEMFARRPHRA 180 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 L+R+ ++ +L +P R++D L+ R+R K+ ++ + + G GY A+DV Sbjct: 181 LTRDEIMDILKGHDY-SPLDRSIDALVSRVRRKIDNGSSTSPKIKSIRGIGYMFASDV 237 >UniRef50_Q2P1E0 VirG-like two component response regulator n=13 Tax=Proteobacteria RepID=Q2P1E0_XANOM Length = 259 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 131/233 (56%), Gaps = 10/233 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++V+D+ + + G V + + L E ++ + D++LLD+ L E+GL L Sbjct: 25 VLVVDDDQAMAHVVMGHIRSHGMEAFVATNSSELAEALRRREPDILLLDLMLKHEDGLDL 84 Query: 65 TRALRERSTVGIILVTG-RSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 RALR+ S + +I+++G R D IDR+VGLE+GADDY+ KP L EL R++ +L R + Sbjct: 85 LRALRKESDIPVIIMSGHRRDEIDRVVGLELGADDYLPKPFGLHELTARIRAVLRRHITS 144 Query: 124 RQAQPH-TQDNCYRFAGYCLNVSRHTLERDGEP-IKLTRAEYEMLVAFVTNPGEILSRER 181 + A + RF + ++ T+ R G P I LT+ EY +L AFV PG LSRE Sbjct: 145 KMAAARGAGEGRVRFDAWEFDLQARTVGRTGAPAIALTKGEYALLRAFVDAPGRPLSREH 204 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L+R + R E+ R++DV I RLR KL D L+VTQ G GY V Sbjct: 205 LMR--ATRLHEDVFDRSIDVQILRLRRKLEQDPREPTLIVTQRGAGYVFTPSV 255 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 128/231 (55%), Gaps = 10/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGA-GLREIMQNQSVDLILLDINLPDE 59 M H ++++EDE + L++Y GY V +G GL +N+ + +ILLDI LPD Sbjct: 1 MMHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G L + +RE S V ++++T R + D+++G E+GADDYV KP RE+V RVK +L R Sbjct: 61 SGWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D + G ++V + DG+ I+LT E+++L + N G+++SR Sbjct: 121 ------TYGSQDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSR 174 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAAD 228 E+ L + DLRTVD I++LR KL +L+ T G GY L D Sbjct: 175 EKCLNEVWGYDFYG-DLRTVDTHIKQLREKLGEKRNLIKTVWGIGYKLEGD 224 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 136 bits (343), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 17/235 (7%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+ VEDE L+ +EG+ VS +GA + + Q+ D I+LD+ LPD+NG Sbjct: 6 QILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQNGFE 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + LR++ ++ +T R D IDR+VGLE+GADDY TKP RE+V R+K + R+++ Sbjct: 66 VCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEIQ 125 Query: 124 RQ---AQPHTQ--DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 Q +QP + + A + N ++ G+ ++LTR EY +L + +P ++ S Sbjct: 126 AQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKVFS 185 Query: 179 RERLLRMLSARRVENPDL---RTVDVLIRRLRHKLSA-----DLLVTQHGEGYFL 225 R++L+ + E+P+ RTVD I+ LR KL D + T G GY L Sbjct: 186 RQQLMDHI----WEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSL 236 >UniRef50_Q2W3Z2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=9 Tax=Proteobacteria RepID=Q2W3Z2_MAGSA Length = 278 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 128/237 (54%), Gaps = 16/237 (6%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I +V+DEP +A L+ GY V+ ASGA R+ ++ DL ++D+ LPD +GL Sbjct: 45 KRIYVVDDEPDIRALLRQVLEGYGYHVTPLASGALARQAIRRDPPDLCIVDLGLPDMDGL 104 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID- 121 L R L E G+I++TGR DR++GLE+GADDY+ KP E RELV RV +++ R D Sbjct: 105 TLVRELWEDVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVIRRRDQ 164 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLER-DGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 LA P T FA + +L DG LT AE +L A + P +LSRE Sbjct: 165 LAATGAPVTTRAV--FADWVFESGDLSLTHADGRQETLTAAEAVLLTALLRAPKRVLSRE 222 Query: 181 RLLRMLSARRVENPDL---RTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 + L E D+ R +DV I R+R K+ AD L+ T +G GY +ADV Sbjct: 223 Q----LQGAEPEKDDIAFDRAIDVRISRIRKKIEADPKSPRLIKTVYGAGYLFSADV 275 >UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JIF2_OLICO Length = 241 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 134/230 (58%), Gaps = 11/230 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPD-ENG 61 I++V+D+P + + T+EGY G ++ + N DLI+LD++ P+ E+G Sbjct: 4 QRILMVDDDPRLCGFVSKFLTREGYATEFAFDGNAMQRALANVPFDLIILDLSFPNGEDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI- 120 + L R +R R +++++GR + +D+I+ LE+GADDY+TKP E REL+ R++ +L R Sbjct: 64 ITLARDIRTRYDTPLVMLSGRHETVDKIICLEIGADDYLTKPFEPRELLARIRTVLRRAR 123 Query: 121 -DLARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R A P +D FAG+ L++ R L D E + LT E+ +L A V G +L+ Sbjct: 124 PTPQRSAAPAEKD-IILFAGWRLDLGRRELFSPDDEAVVLTSQEFHLLAALVQRAGRVLT 182 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 R+++L ++ A R P R++DVLI +LR KL+ + ++ T G GY Sbjct: 183 RDQILDLI-ANRHWTPFDRSIDVLIGKLRRKLNDNNRANQIIKTVRGAGY 231 >UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphaproteobacteria RepID=Q0BQV4_GRABC Length = 253 Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 134/232 (57%), Gaps = 8/232 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +I++VED+P + + + G+ S G + ++ DLIL+D+ LP +G Sbjct: 21 YILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPGGSGFD 80 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L +ALR+ S V II+V+ R + +DR++GLE+GADDY+ KP +EL+ RV+ +L R + Sbjct: 81 LCKALRQSSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRRGPV- 139 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + FAG+ +++ R L + G + L+ AEY++L++F+ N ++ R+RL Sbjct: 140 NEPTAKGKSETISFAGWQIDMKRRELTDPSGAVVDLSGAEYDLLLSFLENAQRVIGRDRL 199 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAADV 229 L LS R+ + R++DVL+ RLR K+ L+ T G GY AADV Sbjct: 200 LE-LSRTRLGDVSDRSIDVLVSRLRRKIGNRVGERPLIRTIRGVGYMFAADV 250 >UniRef50_A8HVW3 Response regulator receiver n=2 Tax=Alphaproteobacteria RepID=A8HVW3_AZOC5 Length = 226 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 128/230 (55%), Gaps = 15/230 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++IVED P + + ++ + G ASGA L+ +Q+ D+ILLD+NLPD + Sbjct: 1 MSATVLIVEDAPESLEMISTFLEENGMRTVRAASGAELKARLQSVQPDIILLDVNLPDAD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ L R LR ++ G+I VT R D + GL+ G DDYVTKP+ R L+ R++++L R Sbjct: 61 GIALARQLRLGASFGLIFVTARDSDEDVLAGLDAGGDDYVTKPINPRTLLARIRSVLRR- 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERD-GEPIKLTRAEYEMLVAFVTNPGEILSR 179 ++ F G+ L+V R L R G+ ++LT E+ +LVA + P E LSR Sbjct: 120 ---------AREPVITFDGWILDVVRRELFRPTGQLVELTAGEFNILVALASRPQEPLSR 170 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLV----TQHGEGYFL 225 + LL ++S R TVD LI RLR K++ + L+ T G GY L Sbjct: 171 DFLLDVISNRDPREISSHTVDNLIARLRKKMTHEGLLPPIATVRGVGYAL 220 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 131/228 (57%), Gaps = 9/228 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IV+DEP ++S F +EG+ V T SG ++N++ DL++LDI LP +G Sbjct: 2 QRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGF 61 Query: 63 MLTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R +R E +I++T R+D +DR+VGLE+GADDYV KP RELV RV+ LL R Sbjct: 62 GVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTA 121 Query: 122 LARQAQPHTQDNCYRFAGYCL-NVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A + + D +G L N R RD + + L E+++L ++PG++ +RE Sbjct: 122 EASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQ-LTLRPKEFDLLAYLASHPGQVFTRE 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGY 223 LL + E D RTVDV IRRLR KLS ++L+ T+ G GY Sbjct: 181 VLLGQVWGYD-EYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGY 227 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 123/214 (57%), Gaps = 8/214 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++EDE L+ YF QE + V+ T +G + + DLI+LD+ LP + Sbjct: 1 MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60 Query: 61 GLMLTRALRERS-TVGI--ILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + R+L++ T GI +++T +SD DRIVGLE+GADDY+ KP +EL+ R+K +L Sbjct: 61 GLSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R + +P + + AG L+++RH + LT E+ +L+A V N G +L Sbjct: 121 RRT----EQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVL 176 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS 211 R+ LL ++ E D RTVDV IRRLR KL Sbjct: 177 DRQMLLDLVWGADYEGTD-RTVDVHIRRLRKKLG 209 >UniRef50_A3NL94 DNA-binding response regulator n=27 Tax=pseudomallei group RepID=A3NL94_BURP6 Length = 245 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 131/239 (54%), Gaps = 22/239 (9%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P +V+ +DEP+ + L +Y + G V + A E + + +++LLD+ LPD +G Sbjct: 8 PAVLVVEDDEPLRRV-LCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGLPDGDG 66 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + RE +I VTGRS+ DRI+GLE GADDYV KP LRE++ R++ LW Sbjct: 67 IDVLLRWRETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRA-LW--- 122 Query: 122 LARQAQPHT-------QDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNP 173 R+A+P T YRF G+ LN+ +R L RD + I LT E+ +L F+ +P Sbjct: 123 --RRAEPSTTPVRRGRHPRAYRFDGWTLNMNTRRLLTRDAQEIPLTVGEFNLLAFFLGSP 180 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 +++R +LL R ++ R VDV I RLR K+ D L+ T+ G GY+ A Sbjct: 181 SRVVTRAQLLE--CTRAFDDVFDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYFDA 237 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 130/235 (55%), Gaps = 14/235 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MPH I++V+DEP L+ QEG+ V+ + G + DLI+LD+ LP + Sbjct: 1 MPH-ILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVD 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R +R II++T ++D ID+I+GLE+GADDY+TKP REL+ R++ +L R Sbjct: 60 GLTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRA 119 Query: 121 DLARQAQPHTQDNCYRF--AGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + A + QD R L+ + E G P++LT EY++L +PG + + Sbjct: 120 EAASR-----QDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYT 174 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 R+ LL ++ D RTVDV +RR+R KL D L T+ G GY+L A+ Sbjct: 175 RQELLDLVWGYDFAG-DERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_A6VZA5 Two component transcriptional regulator, winged helix family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZA5_MARMS Length = 226 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 13/224 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++I+EDEP + +Y Q GY G ++N VD++LLD+ LP +G+ + Sbjct: 4 VLIIEDEPKLAELMSAYLEQAGYEHHHLDRGDIAVNYIKNNQVDIVLLDLMLPGLDGVEI 63 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + +R+ S V II+VT +++ IDR++GLEMGADDYV KP RE+V RVK L R++L + Sbjct: 64 CKQVRQFSGVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRVELDQ 123 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 P T G+ L+V R G+ I LT E+++L + PG + R+ +++ Sbjct: 124 AESPRTD-------GFDLDVDRLRATYKGDLIDLTTVEFQLLQLLIKEPGRVFGRDLIMK 176 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGY 223 + A D RT+D I++LR K+SA +++ + +G GY Sbjct: 177 SIYADSRVVSD-RTIDSHIKKLRKKISAVAPELNVIHSVYGAGY 219 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDEN 60 P +V++EDEP + T EG+ VS G +G+R + + + D+++LD+ LP + Sbjct: 14 PVRVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRP-DVVVLDVMLPGFD 72 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R ++ V ++++T R D D +VGL +GADDY+TKP +RELV R+K LL R+ Sbjct: 73 GLEVCRRIQADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRV 132 Query: 121 DLARQAQPHTQDN--CYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 A P + + ++ + + R G P LT E+++L+ PG +L+ Sbjct: 133 RRAAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLT 192 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFL 225 RE+LL + V+ RTVD ++ LR KL +DL+ T HG GY L Sbjct: 193 REQLLADVW-DWVDATGTRTVDSHVKALRRKLGSDLVRTVHGVGYAL 238 >UniRef50_D0LLH3 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLH3_HALO1 Length = 226 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 14/227 (6%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H I+IVED+ A L GY +V G + ++ S LILLDINLP ENG+ Sbjct: 4 HKILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSENGI 63 Query: 63 MLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + LR+ V +I+++ R D D++ L +GADDY+TKP L EL+ RV +L R+ Sbjct: 64 GVLGTLRQSGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLRRVG 123 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + H RF + + ++ R GE IKLT E+E+L V NP + SRE Sbjct: 124 TQEISALH------RFGSVEVELETRSVVRQGEAIKLTHLEFELLAFLVKNPSRVFSREE 177 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 LLR + + + LRTVD + +LR KL +D +T G GY Sbjct: 178 LLRQVWKQ--SSGTLRTVDNFVAQLRSKLESDPENPRFFITVRGSGY 222 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 122/205 (59%), Gaps = 3/205 (1%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + ++IV+D+ +A L Y GY VS SG G+ E ++ S +++LDI +P ++GL Sbjct: 5 YPVLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGL 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R LR S V +I++T + + DRIVGLE+GADDY++KP REL+ R+K +L R Sbjct: 65 EVLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKG 124 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 P++ AG L+V+ LE +G+ ++L+ E+++L A + NPG ++R+ L Sbjct: 125 PENNNPNS--GQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDL 182 Query: 183 LRMLSARRVENPDLRTVDVLIRRLR 207 + + + D R++DV I +LR Sbjct: 183 MTSVWGKDFNAFD-RSIDVHISKLR 206 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 V+VEDEP + EGYTV G E+ + + D+++LD+ LP +GL + Sbjct: 21 VVVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVC 80 Query: 66 RALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQ 125 R ++ V ++++T R D D++VGL +GADDY+TKP +RELV RV L+ R++ AR Sbjct: 81 RRVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARA 140 Query: 126 --AQPHTQDNCYRF----AGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 P RF ++ ++ + R G + LT E+++LV +P +L+R Sbjct: 141 LVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTR 200 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFL 225 E+LL + + RTVD ++ LR KL ADL+ T HG GY Sbjct: 201 EKLLEEVW-DWADASGTRTVDSHVKALRRKLGADLVRTVHGVGYAF 245 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 130/235 (55%), Gaps = 16/235 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +V+V+DE L+ +EGY V G +++ + D++LLDI LP + Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R +R++ + II++T + ID+++GLE+GADDYVTKP REL+ RVK L R Sbjct: 61 GMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR- 119 Query: 121 DLARQAQPHTQD-----NCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 +QP QD N + +++++ GE I+LT E+E+ + G+ Sbjct: 120 ---HYSQP-AQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQ 175 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 +++RE LL+ + D+RTVDV IRRLR K+ D +VT+ G GYFL Sbjct: 176 VMTREHLLQTVWGYDYFG-DVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229 >UniRef50_B0KI24 Two component transcriptional regulator, winged helix family n=3 Tax=Pseudomonas putida RepID=B0KI24_PSEPG Length = 240 Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 130/233 (55%), Gaps = 8/233 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +++V+D+ + L Y GY V A G +RE + Q V+L++LD+ LP E+ Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLKDAGYNVLAAADGEQMREQLARQKVELVVLDLMLPGED 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL L R L+ + +I+++ + +DRI+GLE+GADDY+ KP E REL+ R+K +L R Sbjct: 61 GLSLCRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRP 120 Query: 121 D-LARQAQPHTQDNCYRFAGYCLNVSRHTLER-DGEPIKLTRAEYEMLVAFVTNPGEILS 178 L QA+ + FAG+ L + L R DGE + L R++Y +L + ++S Sbjct: 121 QRLDAQAEEPAVMDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVLRELLEANNRVVS 180 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLA 226 R++L R R PD R+VD+ + RLR +L A ++T EGY L+ Sbjct: 181 RDQLTRSAFGRD-HLPDDRSVDMCVSRLRQQLRRAPAGAAQILTIRNEGYLLS 232 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 11/228 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M H IV++EDEP L + GY V G +++Q++ DL+LLD+ LP + Sbjct: 1 MAHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMS 60 Query: 61 GLMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G + +A++ E + + II++T R D +DRI+G E+GADDYV KP REL++R+K +L Sbjct: 61 GTDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R H Q + G + +TL DG LT E+ + FV N G++L Sbjct: 121 RRNVNILPKVAHWQRD-----GLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVL 175 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS--ADLLVTQHGEGY 223 SRE+LL E RTVD +RRLR KL AD L T G GY Sbjct: 176 SREQLLSNAWGYEFEGYS-RTVDTHVRRLRKKLGPYADWLETVRGIGY 222 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 131/232 (56%), Gaps = 11/232 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP+ I +VED+ + SY + + V V A G + + + Q DL++LD+ LP + Sbjct: 47 MPN-IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGID 105 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 GL L R LR+ S T+ I+++T R D D+++GLEMGADDYVTKP E R L+ RV+ LL R Sbjct: 106 GLQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRR 165 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + +P ++ G ++++ T+ GE ++L+ EY +LV N GE+++R Sbjct: 166 SSV---NEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNR 222 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLA 226 +R+L+ L D R+VDV I +LR K A + T G+GY + Sbjct: 223 DRILQQLRGIEFNGTD-RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFS 273 >UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax=Proteobacteria RepID=Q2NZ71_XANOM Length = 242 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 132/235 (56%), Gaps = 10/235 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P +++V+D+P + + + + GY V + + A +R +M + DLI+LD+ +P E+G Sbjct: 8 PPCVLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGEDG 67 Query: 62 LMLTRAL-RERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L R L ER + +I+++ + DRI+GLE+GADDY+ KP EL+ RV+ LL R Sbjct: 68 LSAARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRRS 127 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERD--GEPIKLTRAEYEMLVAFVTNPGEILS 178 + + Q + N Y FAG+ L+V R L RD G I L+ E+ +L FV +P +LS Sbjct: 128 QSSNE-QSDQRGNVYEFAGWRLDVVRRDL-RDPTGIFINLSDGEFALLRTFVEHPQRVLS 185 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLS----ADLLVTQHGEGYFLAADV 229 R++LL R + D R +D I RLR K++ +L+ T EGY L V Sbjct: 186 RDQLLECARGRDTDVYD-RAIDSQISRLRRKINERVHTELIRTVRNEGYMLLPSV 239 >UniRef50_C7LZ74 Two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZ74_ACIFD Length = 225 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 9/225 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE- 59 M H+++VED+P L YF +E V V ++G + SV L++LD+NLP Sbjct: 1 MGRHVLVVEDDPAIADLLCVYFAKEEGEVRVVSNGEDALSAF-DASVTLVILDLNLPGRL 59 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +GL + RA+R RSTV II+++ R + +DR+ GLE+GADDYVTKP REL+ RV+ + R Sbjct: 60 DGLEVARAIRHRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERR 119 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + +A P + F G + + RDG P+ LT E+++L F +P L+R Sbjct: 120 V----EANPSSA-AALSFNGVDWDPRARQVLRDGVPVALTNREFDLLGYFFAHPATALTR 174 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLV-TQHGEGY 223 LL + D RTVDV + +LR KL + + T G GY Sbjct: 175 RELLDGVWGPEWYGDD-RTVDVHVLQLRKKLGGAIAISTVWGVGY 218 >UniRef50_A8GAJ9 Two component transcriptional regulator, winged helix family n=54 Tax=Gammaproteobacteria RepID=A8GAJ9_SERP5 Length = 246 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 136/241 (56%), Gaps = 14/241 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGA-GLREIMQNQSVDLILLDINLPDE 59 M ++IV+D+P L + ++V G+ L + Q + L+LLD+ LPD Sbjct: 1 MKPAVLIVDDDPAICDLLCDVLNEHVFSVHACHRGSEALTLLSQQPDIALVLLDLILPDT 60 Query: 60 NGLMLTRAL-RERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 NGL++ + + R R + ++++TG D +VGLEMGADDY+ KP R +V R K +L Sbjct: 61 NGLLVLQQIHRLRPDLPVVMLTGLGSESDVVVGLEMGADDYIAKPFNPRVVVARAKAVLR 120 Query: 119 RIDLARQAQPHT----QDNCYRFAGYCLNVSRHTLERDG-EPIKLTRAEYEMLVAFVTNP 173 R A +P T + ++F G+CL+ +R TL +P+ LT+ EY +L+A V + Sbjct: 121 RTG-ALALEPATAGRNKPEGWQFNGWCLDTARCTLHNPQRQPVDLTQGEYGLLLALVQHA 179 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAAD 228 ++L+R+RLL + + +E D RT+DVLI RLR K+ +L+ T G GY AAD Sbjct: 180 RKVLTRDRLLELTHSETLEVFD-RTIDVLIMRLRRKIEINPHQPELIRTIRGLGYVFAAD 238 Query: 229 V 229 V Sbjct: 239 V 239 >UniRef50_A7ICZ4 Two component transcriptional regulator, winged helix family n=2 Tax=Alphaproteobacteria RepID=A7ICZ4_XANP2 Length = 255 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 126/237 (53%), Gaps = 18/237 (7%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+DE + + Y +G+ V ASG L ++ + DLIL+D+++P E+GL L Sbjct: 14 IIVVDDEEALRETVAEYLAGQGFRVRSAASGRDLDTLLAAEPADLILMDVHMPGEDGLTL 73 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR----- 119 R +R + II++T D +DR+ GLE+GADDYV KP +LREL R++ +L R Sbjct: 74 ARRIRSAAATPIIMLTAADDIVDRVAGLEVGADDYVVKPFDLRELKARIRAVLRRYTAVP 133 Query: 120 -----IDLARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNP 173 A A P D L++ H L RDG LT E+++L F+ NP Sbjct: 134 PPTHEPPPANGAVPAGAD-LVPCGVVFLDMEAHCLVRRDGTREMLTAMEFDLLRVFLQNP 192 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 +L+R+RLL + R E D R++DV + RLR K+ AD + T G GY Sbjct: 193 NRVLTRDRLLDLAHDRDNEPFD-RSIDVRVTRLRKKIEADPAKPQAIKTVRGVGYLF 248 >UniRef50_Q398T9 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q398T9_BURS3 Length = 395 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 126/231 (54%), Gaps = 8/231 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 IV+++DE + LQ + T G+ V A G L ++Q + DL++LD+ + E+GL + Sbjct: 165 IVVLDDEAELRNMLQRFLTGHGFQVRAVADGKRLDRLLQREPYDLLVLDLMMEPEDGLSV 224 Query: 65 TRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R LR E T+ I+++T + D D++VGLE GADDY+ KP ELV RV+ LL R +A Sbjct: 225 CRRLRAEGQTLPILMLTAKGDAADKVVGLETGADDYLAKPFLPDELVARVRALLRRQKMA 284 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 +P RF + +V + TL RDG P+++ A+ +L A ++P +SRE LL Sbjct: 285 -AGEPTVTSQRLRFGAFTFDVGQQTLMRDGTPVEIHSAQMLLLHALGSSPNRAVSRENLL 343 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 R D R+VDV I RLR + D + T G GY L A V Sbjct: 344 ARARGRDHAALD-RSVDVQILRLRQIVEDDPGKPRFIKTVWGIGYMLVAGV 393 >UniRef50_C5CP31 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=C5CP31_VARPS Length = 249 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTV-SVTASGAGLREIMQNQSVDLILLDINLPDE 59 MP I++++D+ A L +YF + GYT+ S GL + ++ D +LD+ LP+ Sbjct: 18 MPR-ILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAK-LRAGPFDAAILDVMLPEM 75 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G L R +R+ S + I+++T R + +DR+VGLE+GADDYV KP E RELV RV+ +L R Sbjct: 76 DGFALCREIRKESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRR 135 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 A F G +++ R + R GE ++LT E+E+L PG++ SR Sbjct: 136 QRSTPAAANGNGTQHRVFDGLSIDLDRRQVLRHGERVELTGTEFELLALLAAEPGKVFSR 195 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-DLLVTQHGEGYFLA 226 + +L L E R VD+++ RLR KL D + T GY LA Sbjct: 196 DDILNRLRGHEAEL-YTRAVDIVVSRLRKKLEPLDCIKTLRNAGYALA 242 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 131/223 (58%), Gaps = 6/223 (2%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGA-GLREIMQNQSVDLILLDINLPDENGL 62 I+I+EDE L +EG+ + +G+ GLRE+ + DL++LD LPD +GL Sbjct: 5 RILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKP-DLLVLDWMLPDRSGL 63 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + + + + I+++T RSD D+I+GLE+GADDY+TKP +LRE+VVR++ +L R+ Sbjct: 64 DICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLAQ 123 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 A+ + F ++ + + + GE + LT E+++L+A + G I +R L Sbjct: 124 AQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAEL 183 Query: 183 LRMLSARRVENP-DLRTVDVLIRRLRHKL-SADLLVTQHGEGY 223 L S + P D+RTVD I+RLR KL +ADL+ T G GY Sbjct: 184 LE--SVWGYDFPGDMRTVDTHIQRLRKKLDAADLITTVFGIGY 224 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 9/225 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++IVEDE + ++ YF +EG+ V + G I VDL +LDI +P + Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R +RE S IIL+T +S D+++G E+GADDY+TKP + L+ + K LL Sbjct: 61 GLAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALL--- 117 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R+ N F G +N H ++ +GE + L+ EY++L+ +N G LSR+ Sbjct: 118 ---RRTGTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRD 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL--SADLLVTQHGEGY 223 R+L + D+RTVD I+RLR KL A+ + T G GY Sbjct: 175 RILDNVWGYDYFG-DIRTVDTNIKRLREKLLDKANYIATVRGSGY 218 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 130/230 (56%), Gaps = 10/230 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLR-EIMQNQSVDLILLDINLPDENGL 62 I++V+D+P Q L Y ++G+ V V SGA + + + VDL++LDI LP E+GL Sbjct: 16 RILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDGL 75 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R L ++ +I+++ R + IDRIVGLE+GADDYV KP REL+ R++ +L R + Sbjct: 76 SIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQRM 135 Query: 123 ARQAQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A+ QD R + ++ +R DG + LT E+++L F+ P +++R++ Sbjct: 136 EPDAR-GKQDERIRVGDFAIDPQTRQAFLSDGA-LDLTHGEWQLLQFFMERPNRVINRDQ 193 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 ++ L D R++DV I RLR K+ + LVT GEGY A Sbjct: 194 IMDYLKGYERSAFD-RSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFA 242 >UniRef50_A0Z5Z4 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5Z4_9GAMM Length = 239 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 132/234 (56%), Gaps = 10/234 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IVED+ + L+ FTQ G+ S+ AS +++ L+++D+ LPD +G+ + Sbjct: 4 VLIVEDDEILGDELRDVFTQWGFEASLVASVHDFWANVEDYQPQLVVVDLTLPDGSGVDI 63 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR---ID 121 R +R +S +GII+++GRSD I+R+V +E GADDYV KP RE+V R++ L++R + Sbjct: 64 IRDVRSKSDIGIIVMSGRSDEIERVVCIETGADDYVVKPFSSREMVARIRQLMYRTGGVA 123 Query: 122 LARQAQPHTQDNC-YRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 A +T + ++F Y + S L + G+ + LT E+ +L V + ++LSR Sbjct: 124 YTPSAAVNTLETGRFKFNDYVFDTSAMALTDPGGDEVSLTTLEFSVLKTMVVHARQVLSR 183 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFLAADV 229 E LL + A D R +D L+ R+R K+ SA + T G GY A +V Sbjct: 184 EFLLESVHATNWAGSD-RNIDNLVSRIRKKISAPGSAPPVRTVRGVGYMFALEV 236 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 12/226 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++VED+P +Y G+ V+ G G + + DLI+LD LP +G + Sbjct: 42 VLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSEV 101 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R +R R V IIL+T +RI GLE GADDY++KP RELV+RV+++ L R Sbjct: 102 CRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSI-----LRR 156 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 T + + + L+ S H++ R GE + LT E+++L + +PG+ SRE+LL+ Sbjct: 157 SIGDLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLK 216 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 S E DL TV V +RRLR K+ D +L T G GY L Sbjct: 217 --SVWGWEFGDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 124/235 (52%), Gaps = 10/235 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H I+IVEDE + + LQ F E Y V G + LILLD+ LP ++G Sbjct: 4 HRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKSGF 63 Query: 63 MLTRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R +R++ II++T +++ ++ GL+MGADDYVTKP + EL+ RVK L RID Sbjct: 64 EVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRRID 123 Query: 122 LARQAQPHTQ---DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 L QA P Q + FA L+ + + G P++L+ E+++L F GE++ Sbjct: 124 LQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEVVL 183 Query: 179 RERLLRMLSARRVEN-PDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 RE LL+ L EN P RT+D I LR KL D ++++ G GY A Sbjct: 184 REDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFDA 238 >UniRef50_C8Q1W1 Two component transcriptional regulator, winged helix family n=1 Tax=Pantoea sp. At-9b RepID=C8Q1W1_9ENTR Length = 261 Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 123/233 (52%), Gaps = 9/233 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI+IVED+ L ++ +GYT + + S ++ + DLILLD+ LP E+GL Sbjct: 28 HILIVEDDAEISRSLATFLQAKGYTATTSDSAEAGLLFLKTHAPDLILLDLMLPGESGLD 87 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R +R + II+VT D ID +VGLE+GADDYV KP +L L+ R++ +L R Sbjct: 88 FCRKIRSPDSPPIIMVTALDDPIDNVVGLELGADDYVIKPFDLNVLLARIRAVLRRTSAI 147 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERD-GEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 AQ + +F+G+ SR L G LT E ++L+ + ++LSRE L Sbjct: 148 ETAQKPVGEAVLQFSGFTFYPSRRFLRSPTGIRKPLTGVETDLLLVLCQHVKKVLSREDL 207 Query: 183 LRMLSARRVENP-DLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 +++ R E P +R++D+LI RLR KL D + T GY DV Sbjct: 208 IQL--TRGSEAPLSMRSIDLLISRLRRKLVTDDTNEEFIRTFRNNGYMFRPDV 258 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+IV+D+ L Y ++ + V +R + +V+L++LD+ LP +GL L Sbjct: 35 ILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPGTDGLTL 94 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 +R +RERS + +I++T R+ DRI+GLE GADDY+ KP E RELV R+ +L R A+ Sbjct: 95 SREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQGAK 154 Query: 125 QAQPH-TQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + P+ + + F G+ L+ TL G + L+ AE+ +L F+ P + SR++L Sbjct: 155 EVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRLFSRDQL 214 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 + R ++ + R++D+L+ RLR KL+ D ++ T G GY Sbjct: 215 MEQARGRAMDAFE-RSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 14/226 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI++VEDE L Y + G+ + SG G+ E ++ ++ DLILLDI LP +NGL Sbjct: 7 HILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLE 66 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R STV I +VT + IDR++GLE+GADDY+ KP RE+V R+K L R+ Sbjct: 67 VCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQI 126 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 +P G+ ++ ++ + + + LT EY +L V+NPG + SR +LL Sbjct: 127 GVPEPTR-------TGFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLL 179 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQ------HGEGY 223 + + D R +D I+ LR K+S L Q +G GY Sbjct: 180 DLCYQQEQLIID-RVIDSHIKNLRKKISTALPPGQEVIHAVYGIGY 224 >UniRef50_A1VSF0 Two component transcriptional regulator, winged helix family n=4 Tax=Betaproteobacteria RepID=A1VSF0_POLNA Length = 246 Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 128/238 (53%), Gaps = 16/238 (6%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P I +++D+P + S + G+ S LR ++ + DL ++D+ LPD +G Sbjct: 12 PRCIYLLDDDPDICRLVSSTLREFGFETFECHSAMELRRLLLARVPDLCIVDLGLPDADG 71 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + R L+ R G++++TGR DR++GLE+GADDYV KP E RELV RV+++L R D Sbjct: 72 MDVVRELQARYACGVMVLTGRGYLSDRVMGLELGADDYVVKPFEPRELVARVRSILRRRD 131 Query: 122 LARQA--QPHTQDNCYRFAGYCLNVSRHTLER-DGEPIKLTRAEYEMLVAFVTNPGEILS 178 A A QP + F G+ + L G+ L+ E ML+ F+ P IL Sbjct: 132 KAPGASMQPEMRSQLAEFGGWRFRADCNLLSSPGGQEWTLSAGESRMLLQFLQRPNRILD 191 Query: 179 RERLL--RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 RE+L R LSA R+VDV + RLR KL +D + T +G GY LAA+V Sbjct: 192 REQLCGDRDLSALD------RSVDVRVSRLRRKLESDPQHPTTIRTVYGAGYLLAAEV 243 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 131/234 (55%), Gaps = 8/234 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +HI++V+D+ + L Y G+ VS A+G + ++ + V+LI+LD+ LP E+GL Sbjct: 5 NHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGL 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L R +R + + II++T + +DRI+GLE+GADDY+ KP + REL+ R+K +L R Sbjct: 65 SLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRN 124 Query: 123 ARQAQPHTQDNCY-RFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R + Y F G+ L+ +R +G + L ++Y +L A + +P LSR+ Sbjct: 125 DRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSRD 184 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L+ + + D R++DV I RLRH + AD ++ T GY LA+ V Sbjct: 185 FLVEHVYGKESHAMD-RSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQV 237 >UniRef50_B4WZT8 Response regulator receiver domain protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZT8_9GAMM Length = 225 Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 127/231 (54%), Gaps = 15/231 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP ++IVEDEP L +E + V+ G + + Q+VDL++LD+ LPD N Sbjct: 1 MPA-VLIVEDEPRIAEPLMFALEREHFAVTHVTLGQQALDAVAGQAVDLVVLDVGLPDMN 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + LR+ S + ++ +T R D +DRI+GLE+G DDYVTKP RE+V R++ +L R+ Sbjct: 60 GFDVLKQLRQHSELPVLFLTARQDEVDRILGLELGGDDYVTKPFSPREVVARIRAILKRL 119 Query: 121 DLARQAQPHT-QDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 A T + ++ L V RHT + LTR+EY +L V PG++ S Sbjct: 120 GPKSDADIDTNKTTLWQVDDSGLRVFFRHT------ELSLTRSEYRILTTMVQRPGQVFS 173 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFL 225 R +LL + + E+ R+VD I+ LR KL L+VT+ G GY L Sbjct: 174 RAQLLDICDSD--EDSFERSVDTHIKTLRAKLRPLNGDHLIVTRRGIGYLL 222 >UniRef50_C1SP47 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP47_9BACT Length = 234 Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 18/238 (7%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M H+I+IV+D+ L Y Y+V V + L + +++ +I+LDI +P N Sbjct: 1 MSHNILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLMLEKYLKSSKPSVIILDIMMPHIN 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + LR+ S + +I+++ R + DRI GLE GADDY+ KP E REL+ R+ ++ R Sbjct: 61 GFDLCKKLRKNSDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKRF 120 Query: 121 DLARQAQPHTQDNC-----YRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 + H++D Y++ ++ ++ DG ++LT+ E+ +L V NP Sbjct: 121 E-------HSEDTANNAAVYQYGELSIDTDKYKATMDGSNLELTKTEFIILSLMVRNPYI 173 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +LSR+RL L+ + + RTVD+ + RLR KL+ D + T GEGY AD Sbjct: 174 LLSRDRLYNELTGFDCDAYN-RTVDISVSRLRTKLNDDPKSPKYIKTVWGEGYMFIAD 230 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 12/233 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++VEDE + L + QEG+ V++ A G +I Q+ DLI+LD+ LP + Sbjct: 1 MDSLILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R+++ II++T R D +D+++GLE+GADDY+TKP REL +R+K +L Sbjct: 61 GWEVMKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVL--- 117 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R+++PH Q + +N R + LT E+++L+ NPG++ SR Sbjct: 118 ---RRSRPHEQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRL 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +L + E + RT+D I LRHK+ A + T +G GY L A+ Sbjct: 175 HILERVFGDIYEGYE-RTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_A3PND2 Two component transcriptional regulator, winged helix family n=4 Tax=Rhodobacter sphaeroides RepID=A3PND2_RHOS1 Length = 233 Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 8/230 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+ ++DE ++S Q G+ V S A R++ + VDL L+D +LPD NGL L Sbjct: 5 ILALDDEAAILTIVRSTLEQRGFRVVTAKSLAQFRKVDAQEQVDLYLIDTSLPDGNGLSL 64 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R LR+ S GIIL+ + D + ++GLE+GADD + KP REL RV + R Sbjct: 65 LRELRKVSDRGIILLAPQRDEAEGVLGLELGADDTLLKPFRERELAARVGAVFRRTGRPA 124 Query: 125 QAQPHTQDNC-YRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + P + + F GY L++ +R DG ++LT +E+E+L A + G++LSR+++ Sbjct: 125 TSLPAGRPGIDHEFDGYGLSLQARKLWAPDGREVELTTSEFELLAALLGRRGQVLSRDQI 184 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + + R+ E+ D R VD ++ RLR KL A + T HG GY A Sbjct: 185 MNAIKGRQWESYD-RVVDGIVSRLRRKLPASRSGSPFIRTVHGVGYTFAG 233 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 12/225 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +I IVED L+ Y Q + V G L M+++ DLILLD+ LP +G+ Sbjct: 12 NIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGADGVT 71 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R +R S V II+VT + + IDR++GLE+GADDYV KP RE+V RVK +L R Sbjct: 72 LCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRR---- 127 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 +PH + L H++ G+ +K+T++E+ +L AF+ +PG++ SR+ L+ Sbjct: 128 GGEEPH--EAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRDELI 185 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGY 223 + R E D R +D I+ LR KL A + + + +G GY Sbjct: 186 AKIQGRTYEGYD-RNIDWHIKNLRKKLIAAQPGLEPIESVYGVGY 229 >UniRef50_B4SKL2 Two component transcriptional regulator, winged helix family n=2 Tax=Stenotrophomonas maltophilia RepID=B4SKL2_STRM5 Length = 235 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 133/236 (56%), Gaps = 15/236 (6%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P +++V+D+ + + GY V V A L ++Q + D+I+LD +P E+G Sbjct: 4 PARVIVVDDDASIRDAIADCLLLHGYQVRVAAGAMALDMLLQAERPDVIILDWMMPGEDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R L+ R+ + I++++ DR++GLEMGADDY+ KP + REL+ RV+ LL R D Sbjct: 64 LSVCRRLQARA-IPILMLSAMGSAPDRVIGLEMGADDYLAKPFDPRELLARVRALLRRQD 122 Query: 122 LARQAQPHTQ-DNCYRFAGY-CLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 R TQ + RFAG+ L R + DG + L+R E+ +L+ PG +L+R Sbjct: 123 KLR-----TQVASEMRFAGWRLLPEQRRLIAPDGAELVLSRGEFSLLLVLAERPGRVLAR 177 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLV-TQHGEGYFLAADV 229 E+LL++ + ++ D R +D+ I RLR KL A+ LV T GEGY A+V Sbjct: 178 EQLLQLSRSEPSDSVD-RAIDLAISRLRRKLGQAAPGAEALVQTLRGEGYRFDAEV 232 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+D+P +++ QE + V S + E ++N DLI+LDI LPD +GL Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 64 LTRAL-RERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + L R+ + +I +T R +D I+GLE+GADDY+TKP R L+ R+K + R ++ Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + N + ++++ +++ +DG+ +L R E+E+L + NPG++ +R+ + Sbjct: 122 GPKDR-----NVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEI 176 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFL 225 L + D RTVDV I +LR K+ ++ + T G GY L Sbjct: 177 LDRVWGMDFFG-DFRTVDVHISKLREKIGSEFIKTVRGVGYKL 218 >UniRef50_A6TM13 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TM13_ALKMQ Length = 231 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 12/228 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-QSVDLILLDINLPDENGLM 63 I++VED+P TQ ++ Q + V GA +++ N + +D I+LD+ LPD NGL Sbjct: 6 ILVVEDDPTTQRLIRHTLEQHQFQVLSAEDGAMTLDLLSNHKDIDAIILDLFLPDCNGLE 65 Query: 64 LTRALRERST---VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L + +R S + ++++T D++D ++ LEMGADDY+TKP REL+ R+ L R Sbjct: 66 LLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADDYITKPFHKRELIARINVCLRR- 124 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 Q + + +G L+++ +++D I LT AE+E+L+ FVT+PG++ SR+ Sbjct: 125 ---AQNTIRSHNTSRSISGITLDITTREVKKDDGLISLTFAEFELLLLFVTHPGKVFSRD 181 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL---SADLLVTQHGEGYFL 225 LL L + + R +D+ I LR KL L+ T G GY L Sbjct: 182 DLLTKLWGESFVS-ETRVIDMHISSLRKKLDDSDNQLIETIRGVGYRL 228 >UniRef50_C7I0W4 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=C7I0W4_THIIN Length = 365 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 133/232 (57%), Gaps = 14/232 (6%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+D+P +A L+ Y T G+ V + A G +R + Q ++LD+ LP E+GL L Sbjct: 130 ILVVDDDPGLRAMLRDYLTGNGFAVDLAAHGDAMRACLAQQMPHAVILDLMLPGEDGLAL 189 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI---- 120 R LR S + I++++ R + IDR++GLE+GADDY+ KP REL+ R++ LL R Sbjct: 190 ARELRRSSDLPILMLSARGEEIDRVIGLEVGADDYLPKPFSPRELLARLRALLRRAQPTS 249 Query: 121 --DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 DL ++P Q RF + L+ + L RDG+ + L+ AE+ +L A V +P +LS Sbjct: 250 AGDLPPASKPAEQ--AVRFGPFLLDAAAFRLLRDGQDVGLSVAEFTLLQAMVAHPNRVLS 307 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 R++L+ L + D R++DV + RLR K+ D + T G+GY Sbjct: 308 RDQLIDWLKGYERDAFD-RSIDVRVARLRRKIEDDPARPVYVRTIRGQGYLF 358 >UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I3L5_9CLOT Length = 227 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 7/229 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++IVED+ L EGY S + + DLILLD+NLPD + Sbjct: 1 MNTQVLIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNLPDGS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + + T+ II++T ++D D+++GLE+GADDY+TKP ++E+ R+K + RI Sbjct: 61 GFDFCKDINAKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRI 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + A ++ + +N + T+ ++ E I+L EYE+L FV N ++ SRE Sbjct: 121 E--KSASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSRE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD----LLVTQHGEGYFL 225 +L+ + + D+RTVD+ IRR+R KL + ++ T G GY + Sbjct: 179 QLIDNIWEFSYDG-DIRTVDIHIRRIRSKLDTNGHPSVIETVFGVGYMM 226 >UniRef50_P31079 Protein petR n=50 Tax=Alphaproteobacteria RepID=PETR_RHOCA Length = 237 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 123/236 (52%), Gaps = 13/236 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P H++IV+D+ + LQ + + G+ V+ A R ++ +LI+LD+ +P E+G Sbjct: 6 PPHLLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLLSGLEFNLIVLDVMMPGEDG 65 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L LTR LR + I+L+T R + +RI GLE GADDY+ KP E +EL++R+ +L R+ Sbjct: 66 LSLTRDLRTKMATPILLLTARGETRERIEGLEAGADDYLPKPFEPKELLLRINAILRRVP 125 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A A P ++ R L + +P++LT E ++ F + GE++ R Sbjct: 126 EAVTAGP----KYLSLGPLRYDLDRGELSQGDQPVRLTATEAALMRIFAAHAGEVIGRTE 181 Query: 182 LLRML----SARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L+ L SA E R VDV I RLR K+ D L T G GY LA D Sbjct: 182 LIEELGRDRSASAEEAAGDRAVDVQITRLRRKIEPDPREPRYLQTVRGLGYMLAPD 237 >UniRef50_B7RTP1 Response regulator receiver domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RTP1_9GAMM Length = 289 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 129/213 (60%), Gaps = 9/213 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++I+ED+P+ + L+ +EG S+ S +I++ L+++DI LPD +GL + Sbjct: 8 VLILEDDPLAASELKDCLAREGLHPSIARSKEHFEKIVEQHEFQLLIVDIGLPDGSGLDV 67 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID--- 121 R +RE+S+VGII+V+G + D + +E+GADDY+ KP+ ++EL +V+ ++ R Sbjct: 68 IREVREQSSVGIIVVSGYTTESDVVAAIELGADDYIKKPISIKELRAKVRRMMIRTSGNG 127 Query: 122 LARQ-AQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 +R AQP+ + + F + L++ H L + + LT AEY++L+A + N ++LSR Sbjct: 128 YSRSIAQPNNNEQKF-FGDWHLDLDSHRLFYKINHEVGLTSAEYKILLALLNNCDQVLSR 186 Query: 180 ERLLRMLSARRVENP-DLRTVDVLIRRLRHKLS 211 LL L + + +P D RT+D LI R+R KL+ Sbjct: 187 HSLLNHLQS--ISSPYDERTIDGLINRVRKKLA 217 >UniRef50_A9DQD6 Probable two-component response regulator protein n=2 Tax=Rhodobacteraceae RepID=A9DQD6_9RHOB Length = 247 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/235 (35%), Positives = 131/235 (55%), Gaps = 13/235 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+D+ + L+ +GY V S +R+ + DL+ LD+NL +NGL Sbjct: 4 KKILVVDDDVRIRTLLRRCLEGDGYRVVEAESAQSVRDAFGAAAFDLVTLDLNLGADNGL 63 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R LR V I++VTG+ D IDR+VGLE+GADDY+TKP +RE++ RV+++L R Sbjct: 64 DILRELRRTHDVPIVMVTGKDDVIDRVVGLELGADDYLTKPFHVREVLARVRSVLRRSSR 123 Query: 123 ARQAQPHTQDNCYRFA------GYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGE 175 A+ +D+ A G + + R L +R GE LT A++++L AF+ N + Sbjct: 124 PMPAETTDRDSDTSDAPWLSLDGLKIRLDRMLLVDRQGEDCDLTTADFKLLAAFLKNAKK 183 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 LSR+RL+ ++ + D RT+D + RLR K+ D L+ T G GY L Sbjct: 184 PLSRDRLMDLIDGQEWAPLD-RTIDNQVARLRKKVERDASRPLLIKTVRGIGYIL 237 >UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridium perfringens RepID=Q0TNL1_CLOP1 Length = 232 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 4/230 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I+EDEP Q L+ F +EG+ V G +I + + L++LD+ LPD + Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDIS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + R L + II++T R D +D+++GLE+GADDY+TKP ++RE V RVK L R Sbjct: 61 GFDVCRELN-KLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRK 119 Query: 121 D-LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D +++ T + + + + + E I+L E E+L+ F+ NP LSR Sbjct: 120 DKFLKESNKSTVKDEFIIGSIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSR 179 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLV-TQHGEGYFLAAD 228 +++L + D RTVDV +RRLR KL+ + ++ T G GY + Sbjct: 180 DQILDGVWGDEYFG-DFRTVDVHVRRLRQKLNNEEIIETIFGLGYMFKGE 228 >UniRef50_P07545 Regulatory protein virG n=21 Tax=cellular organisms RepID=VIRG_AGRT5 Length = 253 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 135/235 (57%), Gaps = 13/235 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H+++++D+ + + Y T + V+ A ++ +++VD++++D+NL E+GL Sbjct: 14 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSKQFNRVLCSETVDVVVVDLNLGREDGL 73 Query: 63 MLTRALRERSTVGIILVTG-RSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R+L +S V II+++G R + D+++ LE+GA D++ KP RE + R++ L Sbjct: 74 EIVRSLATKSDVPIIIISGARLEEADKVIALELGATDFIAKPFGTREFLARIRVALR--- 130 Query: 122 LARQAQPHTQD-NCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 R + T+D + FA + LN+ R L +G +KLT E+ +LVAF+ P ++LSR Sbjct: 131 -VRPSVARTKDRRSFSFADWTLNLRRRRLISEEGSEVKLTAGEFNLLVAFLEKPRDVLSR 189 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 E+LL R E D R++DVLI RLR KL D L+ T G GYF ADV Sbjct: 190 EQLLIASRVREEEVYD-RSIDVLILRLRRKLEGDPTTPQLIKTARGAGYFFDADV 243 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 123/231 (53%), Gaps = 10/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + I+IV+DE + L+ Y +E + + ++G E+ + ILLD+ LP+ + Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + LRE II++T + + +R+ G E GADDY+ KP RE+V+RVK LL R Sbjct: 61 GIQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRT 120 Query: 121 D--LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 Q++PH +D F ++ H + D + + LT EYE+L+ P ++ Sbjct: 121 QSTTVEQSEPHARD-VIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFD 179 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKL------SADLLVTQHGEGY 223 RE+LL+ + DLRTVD ++RLR KL +A ++ T G GY Sbjct: 180 REQLLKEVWHYEFYG-DLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGY 229 >UniRef50_D0LHP7 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHP7_HALO1 Length = 227 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P I++ +DE + +Q ++GY V A G ++ +DL++LD+ +P+ +G Sbjct: 3 PARILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPELDG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L R LRER V II ++ RS+ DRI+GLE+G DDYVTKP REL RVK +L R+ Sbjct: 63 LNLCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRRVA 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R A Y L+ + H L D + I LT E+ +L A + PG +L+R + Sbjct: 123 ARRGADDAPPALVYER--LTLDPAAHELRVDDDKIALTVTEFRVLHAILERPGRVLTRSQ 180 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL---SADLLVTQHGEGY 223 L+ + + RT+D IRR+R KL + + T HG GY Sbjct: 181 LIDRAYEDGLHVSE-RTIDTHIRRIRAKLRPYGIEAIETVHGLGY 224 >UniRef50_Q1NHY5 DNA-binding response regulator n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHY5_9SPHN Length = 242 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 136/232 (58%), Gaps = 11/232 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++V+D+ + + QE Y + AS A LR ++ ++VDLI+LD+NLPD +GLML Sbjct: 12 VLVVDDDADIRDLIIGQLHQENYRLLAAASLAELRRTLKEEAVDLIVLDLNLPDGDGLML 71 Query: 65 TRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R LR E + V II+VT R IDR++GLE+GA+DY+TKP E REL+VR++NLL R Sbjct: 72 CRELRAEGADVQIIMVTARGSAIDRVLGLELGANDYLTKPFEPRELLVRIRNLLRR-GRG 130 Query: 124 RQAQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 RF + L++ R + D + L+ AE+ +L F+ P +LSRE L Sbjct: 131 DPTARPAAARFARFGPWRLDLQQRRLVAPDDSLVMLSSAEFRLLSRFIEEPNVVLSRETL 190 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAADV 229 + RR R++D+ + RLR KL+ +L++T GEGY LA+ V Sbjct: 191 ---VPERRATAAFDRSIDLQVSRLRQKLATVPGGDELILTVRGEGYVLASGV 239 >UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP1_OCEIH Length = 227 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 3/228 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M HI +VED+ Q + +Y +EGY ++ + ++ +N D+ +LDI LP + Sbjct: 1 MTVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + +R S V II+++ + + ID+I+GLE+G DDY+TKP REL+ RVK L R Sbjct: 61 GYEFCKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 RQ + +++ + + + + +GE + T EY+ML+ NP SRE Sbjct: 121 TSHRQDE--IEEDRVKVDQLLVYKNERRVFFEGEEFETTTKEYDMLLLLAENPNRAFSRE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAAD 228 LL + D R VD LI+R+R K+ L T G GY L D Sbjct: 179 ELLMKIWGNDYFGSD-RAVDDLIKRIRKKMGNIPLETVWGFGYRLRKD 225 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 13/232 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+++ED + +F +EG+ G + ++ DLI+LDI LP +G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R +RE STV II++T + D+++G EMGADDYVTKP LV R+K ++ R Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 124 RQA---QPHTQDNCYRFAGYCLNVSRHTLERDGEPIK-LTRAEYEMLVAFVTNPGEILSR 179 +A + + C + +N + +GEP++ LT E+++L V NP ++ SR Sbjct: 122 GKAVIDEDMIETEC-----FTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSR 176 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAAD 228 E+LL + + D RTVDV I+RLR KL+++ L T G GY D Sbjct: 177 EQLLEQVWGYQFYG-DERTVDVHIKRLRKKLASEDKPFLYTVWGVGYKFDED 227 >UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax=Actinobacteria (class) RepID=CSEB_STRAW Length = 235 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++ VED+ V + Q ++G+ V+ G E + D+ LLD+ +P +G+ Sbjct: 6 HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLDGVS 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R +R+ STV +I+++ R+D ID ++GLE GADDYVTKP + LV R++ +L R A Sbjct: 66 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLE-------RDGEPIKLTRAEYEMLVAFVTNPGEI 176 ++ G L ++ R G+P+ LT E +L+ F + PG + Sbjct: 126 SGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPGTV 185 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAA 227 LSR++LL + D R VDV ++RLR K+ D + T G GY L A Sbjct: 186 LSRDKLLERVWDYGWGG-DTRVVDVHVQRLRTKIGQDRIDTVRGFGYKLKA 235 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 121/227 (53%), Gaps = 11/227 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IVEDE L +EG+ +V G D++LLD+ LP +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + LR RS+V +I+VT R ID++VGLE+GADDYVTKP REL+ R++ +L R Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR---GG 120 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL- 183 D ++V RH + +G+ I L E+++L + N G +L+R +L+ Sbjct: 121 DDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLID 180 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFL 225 R+ A V D +T+DV ++RLR K+ AD LVT G GY L Sbjct: 181 RVWGADYV--GDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 10/230 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+IV+DEP ++SY +EGY V +G + DLI+LD +P+ + Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R +R++S + II++T +++ +D+++G E G DDYV KP LREL R+K +L R+ Sbjct: 61 GIEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRL 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +A+ ++ L + + G+P+ LT E+++L AF+ NPG+ SR Sbjct: 121 ----EAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRL 176 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 LL E + RT+D I LR K+ D + T G GY L Sbjct: 177 ELLEYAIGEAYEGYE-RTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKL 225 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 21/237 (8%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ-SVDLILLDINLPDENGL 62 I++V+DE + L + GY V + A G R +Q DL+LLDI LP+ +GL Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADG---RTALQRAPEADLVLLDIMLPEVDGL 58 Query: 63 MLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 + R L+ + S + II++T +++ IDR++GLE+GADDYV KP +REL+ RVK +L R Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 120 IDLARQAQPHTQDNCYR-----FAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPG 174 + Q +++N R G L+ S + + I LT EYE+L VTNPG Sbjct: 119 ---SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPG 175 Query: 175 EILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLA 226 SR+ LL + D RTVDV IR LR KL +D + T G GY A Sbjct: 176 RAFSRDELLERIWGYEYYG-DTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 125/227 (55%), Gaps = 13/227 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS---VDLILLDINLPDENG 61 I++V+DEP + L+ Y EG+ VS A GA ++ S VDL+LLD+ +P +G Sbjct: 4 ILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPGMDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R LR + +ILVT RS+ +D++VGL +GADDYVTKP RE+ RVK++L R Sbjct: 64 LEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLRR-- 121 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R+ D RF ++ + DG P++LT E+++L A V PG + SR + Sbjct: 122 --RRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQ 179 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 LL + D R VDV IR LR +L D L+ T G GY Sbjct: 180 LLEQVWGNDFYG-DERVVDVHIRNLRAELGDDATDPHLIATVRGVGY 225 >UniRef50_Q11E93 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=Q11E93_MESSB Length = 268 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 124/215 (57%), Gaps = 7/215 (3%) Query: 22 FTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTG 81 + G+ V + A G + + + +S+DLI+LD+NLP E+GL L R ++S + +I++T Sbjct: 51 LAEAGFRVELAADGVEMFDHLSKKSIDLIILDVNLPGEDGLSLCRRHGQKSNIPVIMLTA 110 Query: 82 RSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYC 141 R IDR++GLE+GADDY+ KP E REL+ R++ +L R A + + RF G+ Sbjct: 111 RGALIDRVIGLEVGADDYLAKPFEPRELLARIRCVLRRAGAAVEPVDARRAKRARFRGWT 170 Query: 142 LNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDL-RTV 199 L+ +R ++R G + L+ E+ +L FV N E+L+RE+LL + + + + R Sbjct: 171 LDFENRCLVDRAGRVVVLSGNEFSLLKYFVENANEVLTREQLLTLSTPATANDYNAQRLA 230 Query: 200 DVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 D+ I RLR KL D L+ T GY LAA V Sbjct: 231 DLQICRLRQKLHPDTDEAPLIATVRNRGYVLAAAV 265 >UniRef50_A1SYE4 Two component transcriptional regulator, winged helix family protein n=4 Tax=Proteobacteria RepID=A1SYE4_PSYIN Length = 246 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 122/235 (51%), Gaps = 10/235 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+IV+DE + + Q GY A G + M+ L+++D+ L +E+GL+L Sbjct: 9 ILIVDDEVDVRILVSDVLNQAGYPCVAVADGNTMFGEMKKALFSLLIIDLRLKNEDGLVL 68 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R++RE S + I+++TG+ DRI+ LE+ ADD++ KP +RELV RV L R + Sbjct: 69 ARSVRENSNIPILMLTGKGSETDRILSLEIAADDFLMKPFNIRELVARVNALQRRAVMTI 128 Query: 125 QAQP---HTQDNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 P C F + L++S R GE LT E+ +L + T P ++SRE Sbjct: 129 NNDPADLSDSHECLSFGHWILDLSARELRNSSGEVTLLTYGEFTLLESLATRPKRVISRE 188 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADVC 230 +LL L + D RTVDVLI RLR KL S + T+ G GY + +V Sbjct: 189 QLLEYLRGAEGDTFD-RTVDVLISRLRQKLEINSRSPRYIRTERGIGYSFSENVS 242 >UniRef50_C8SKC4 Two component transcriptional regulator, winged helix family n=2 Tax=Mesorhizobium RepID=C8SKC4_9RHIZ Length = 257 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 127/235 (54%), Gaps = 16/235 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 IVIVEDEP + + Y GY V+ + A R +++ Q L +LDI +P E+GL Sbjct: 20 RIVIVEDEPDLREAVAEYLDAAGYDVATAETAAAARILIETQPFHLAILDIAMPGEDGLS 79 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID-- 121 L R LR R +GII T +DRIVGLE+GADDY+ KP ELRE++ RV+++L R+ Sbjct: 80 LGRWLRSRMPIGIIYATAAGTALDRIVGLELGADDYIVKPYELREVLARVRSVLRRVPQP 139 Query: 122 ---LARQAQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 L R+A+ T F + ++ R +G I + ++E+++L F+T +L Sbjct: 140 SELLDRKAR--TDRRSVAFGPFQADLDGRLVTGANGAVIDMAKSEFDVLEVFLTRANRLL 197 Query: 178 SRERLLRMLSARRVENPD-LRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 +R + + E+P+ R VD+ I RLR K+ D L T GEGY + Sbjct: 198 TRAAISEAIGF--TEDPESSRAVDIRIMRLRKKIETDPANPKFLRTVRGEGYIFS 250 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 123/227 (54%), Gaps = 10/227 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IVEDE L +EG+ +V G + D++LLD+ LP +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + LR RS+V +I+VT R ID++VGLE+GADDYVTKP REL+ R++ +L R Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL- 183 A D ++V RH + +GEPI L E+++L + N G +L+R +L+ Sbjct: 124 DAG--ADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLID 181 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFL 225 R+ A V D +T+DV ++RLR K+ D LVT G GY L Sbjct: 182 RVWGADYVG--DTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKL 226 >UniRef50_A3JEV6 Two comoponent transcriptional regulator, winged helix family protein n=2 Tax=Marinobacter RepID=A3JEV6_9ALTE Length = 228 Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 120/211 (56%), Gaps = 4/211 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + ++++ED+ + L Y +G+TV A+G + +++S D+++LDI LPD N Sbjct: 1 MQNRVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIMLPDIN 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R LR + + +IL+T D DRIVG E+GADDY++KP RELV R+ LL RI Sbjct: 61 GLDVLRQLRVSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRRI 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 ++A D+ + L + ++G P+ LT EYE+L + + G ++ + Sbjct: 121 AWDQKAD---LDDSRSYGDLRLEPDHRRVRQNGTPLDLTATEYEVLQVLLAHAGSVVRKT 177 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS 211 L++ RR+E D RT+D+ I LR KL Sbjct: 178 DLMQWALGRRLETYD-RTLDMHISNLRKKLG 207 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 125/230 (54%), Gaps = 14/230 (6%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS---VDLILLDINLPDENG 61 IV+VEDE ++ +EG+ V V GA E + DLI+LD+ LP+ +G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R +R+ I+++T RS +DR++GLE+GADDY+TKP LREL RV +L R++ Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 122 LARQAQPHTQDNCYRFAGYCLNV---SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + R A T+D R L + SR R G+P+ LT E+++L NPG + S Sbjct: 124 MMR-ALSRTEDGTTRIDHGDLTIDPLSREVTSR-GQPVHLTAKEFDLLHLLAANPGRVFS 181 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGY 223 R+ LL + D RTVD I RLR KL A+ +VT G GY Sbjct: 182 RDYLLHRVWGEDYVGVD-RTVDTHILRLRKKLGGPGSPAERIVTLWGVGY 230 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 125/231 (54%), Gaps = 13/231 (5%) Query: 2 PHH--IVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPD 58 PH +++VEDEP ++ Y ++G+ V + G AGL + + V + +LDI LP Sbjct: 6 PHRGLVLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPV-VCVLDIALPG 64 Query: 59 ENGLMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G + R LRE +I +T R D +DRIVGLE+GADDYVTKP RELV RV+ +L Sbjct: 65 LPGTEICRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVL 124 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R+ +P G L+ R T+ G+P++LT E+++L + PG + Sbjct: 125 RRVAGPPPGRPRI------VGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVF 178 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQH-GEGYFLAA 227 +RE LL + V RTVDV + ++R KL + ++ H G GY + A Sbjct: 179 TREELLAGVWGYAVPA-GTRTVDVHVAQVRAKLGPESVIRTHRGVGYAVDA 228 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 126/231 (54%), Gaps = 11/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++++DE + L+SY EG+ V +G + ++ DLILLDI +P+ Sbjct: 1 MAQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL RA + + IIL+T + + D+I+GLE+GADDY+TKP RE++ RV+ +L R Sbjct: 61 GLDFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRR- 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + +AQP Q + R L S TL + + LT +E+E+L + +PG + SR Sbjct: 120 --SYKAQP--QADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRL 175 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 LL S + E + RT+DV IR LR K+ D + T +G GY A Sbjct: 176 DLLDRTSGQAYEGYE-RTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 126/232 (54%), Gaps = 12/232 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++ +D+P + ++ YF ++ + G E+M+ + D+++LD+ +P +G Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R +R++ II++T + + DR++GLE+GADDYVTKP RE+V R++ ++ R+ Sbjct: 94 ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRL--- 150 Query: 124 RQAQPHTQDNC----YRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 Q +P +D + F +++ + + GE + E+++LV V +PG + SR Sbjct: 151 -QPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSR 209 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRH---KLSADLLVTQHGEGYFLAAD 228 E+LL + D+RT+DV I+++R KL D + T G GY D Sbjct: 210 EQLLEQVWGFDYFG-DVRTIDVHIKKIRQRLDKLPYDCIQTVWGIGYKFGVD 260 >UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Pseudomonadaceae RepID=B3PD41_CELJU Length = 240 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 116/234 (49%), Gaps = 10/234 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVS----VTASGAGLREIMQNQSVDLILLDINLPDE 59 HI+I+EDEP L E +T + + A L+ Q Q VDL+++D+ LPD Sbjct: 5 HILILEDEPSIAESLVFVLESESFTTHWETLASRALAYLQASPQRQPVDLVVMDVGLPDM 64 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G + LR S V +I +T R +DR+VGLE+GADDYV KP REL RVK +L R Sbjct: 65 TGFEACKQLRRFSEVPVIFLTARGSELDRVVGLEIGADDYVVKPFSPRELAARVKAILKR 124 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + + + ++ R T+ + + LTR E+ +L A V PG + SR Sbjct: 125 TRQVGATLASAAADVQDASEFVIDTERKTIHYHQQLLGLTRLEFSLLQAMVMQPGRVFSR 184 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAAD 228 E+LL L D R++D I+ LR KL A+ + T G GY D Sbjct: 185 EQLLDALGISTDAGYD-RSIDGHIKTLRAKLRALKPGAEPIKTLRGFGYAYQPD 237 >UniRef50_Q07HV3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=Q07HV3_RHOP5 Length = 245 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 125/234 (53%), Gaps = 9/234 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI++V+D + + Y + G S ++ + ++ DLI+LD+ +P E+GL Sbjct: 9 HILVVDDHREIRDAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGEDGLS 68 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R L +++++ S+ DR+VGLE+GADDY+ KP REL+ R+K +L R + Sbjct: 69 AARRLSAGGGPPVLMLSALSEETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRSERR 128 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGE---PIKLTRAEYEMLVAFVTNPGEILSRE 180 FAG+ L+ L R+ + I LT AE+++LVAF+ P +L+RE Sbjct: 129 EPLAGTLGGRKLGFAGWMLDTDTRDLVREADGAAKIALTTAEFKLLVAFLERPRFVLTRE 188 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 +LL + S R E D RT+D + RLR K+ D ++ T GY LAADV Sbjct: 189 QLLDITSGRSAEVFD-RTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAADV 241 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 8/226 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+DE +++Y ++G+ V G +I N+++ LI+LD+ LP G Sbjct: 5 FKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGE 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + +R S+V II++T +++ ++I G+ MGADDY+TKP +RELVVRV+ LL R Sbjct: 65 EVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRR--A 122 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R P + +++ + +++ G + LT E+++L F++NP ++ SRE+L Sbjct: 123 YRDFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKL 182 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 + E D RTVD I+ +R K+ ++ + T +G GY Sbjct: 183 VEKAFGANYEGFD-RTVDSYIKNIRQKIESNHKEPTYITTVYGMGY 227 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 128/231 (55%), Gaps = 16/231 (6%) Query: 1 MPHH---IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLP 57 MP I++V+DE + L S +E Y + ++G ++MQ + L+LLD+ +P Sbjct: 1 MPEQSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMP 60 Query: 58 DENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 + +GL +RE S V II++T RSD +DRI GL++GADDY+TKP REL+ R++ L Sbjct: 61 EMDGLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATL 120 Query: 118 WRIDLARQAQPHT--QDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 R++ T Q L+ ++ G+PI LTR E+++L FV N + Sbjct: 121 ------RRSHRFTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDK 174 Query: 176 ILSRERLL-RMLSARRVENPDLRTVDVLIRRLRHKL--SADLLVTQHGEGY 223 + SRE+LL ++ A + N LRTVD I+ LR KL + + T G GY Sbjct: 175 VFSREQLLDQIWGADYIGN--LRTVDTHIKTLRLKLGEAGGSIQTVWGIGY 223 >UniRef50_C0DY83 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DY83_EIKCO Length = 226 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 14/226 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI+I+EDE ++ + +T + + R+++ + DL+LLD+ LPD +G Sbjct: 4 HILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTDGFE 63 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L + LR + +I++T + + DRI+GLE+GADDY+ KP RELV RVK +L R Sbjct: 64 LLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRT--- 120 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 Q +P + + +V + G + LT+ EY +L + PG + SRE LL Sbjct: 121 -QTRPAAKTESVPV--WHDDVPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELL 177 Query: 184 R-MLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGY 223 M R +P T++ IR LRHKL A + + T HG GY Sbjct: 178 TAMFGGNRPSDP--HTINTHIRALRHKLRAAGIADEHIRTHHGLGY 221 >UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D5A2_9RHIZ Length = 235 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 118/232 (50%), Gaps = 10/232 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +++V+D+P + L+ + ++ G+ G L + D I+LD+ + E+GL Sbjct: 6 DRVIVVDDDPELRTLLRRFLSEHGFETRAVDGGTALDRELSRSPADAIVLDLMMSGEDGL 65 Query: 63 MLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR II++T R D IDRIVGLE GADDY+ KP E RELV R+ +L R Sbjct: 66 AICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLAKPFEPRELVARLSAVLRR-- 123 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R + D+ +N S + RDG +KL+ E+ +L A V + G LSR + Sbjct: 124 -TRGMRDVPTDDTVTIGPLEINFSTRMVTRDGASLKLSSREFALLAAMVRSRGRPLSRAQ 182 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAAD 228 L+ R E D R VDV I RLR L A L+ T G GY L +D Sbjct: 183 LIERALGRDAEVTD-RAVDVQIARLRRALGDRADDAGLIKTVWGVGYVLVSD 233 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 11/227 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+DEP + L+ Y QEG+ V G + + + DL++LD+ +P+ G Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 RA + S +I++T + + D+I+GLE+GADDYVTKP +REL+ R++ +L R Sbjct: 64 LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ--- 120 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 Q + + R A L+ + T+ G + LT +E+ +L + PG++ SR LL Sbjct: 121 --QTPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLD 178 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 +S E + RT+DV IR LR K+ AD + T +G GY A Sbjct: 179 RVSGDAFEGSE-RTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 126/227 (55%), Gaps = 10/227 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DE + ++Y GY V +G ++ ++ DLI+LD+ LP + Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ +T LRE+S V I+++T RSD IDR+ GL +GADDY+TKP RELV RV+ +L R Sbjct: 61 GMEITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRR- 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R+ +P + + RF ++ G+ ++LT E+++L+A N +LSRE Sbjct: 120 ---RRGKP-VKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSRE 175 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA----DLLVTQHGEGY 223 L+ + D R VDV + ++R K+ A +L+ T G GY Sbjct: 176 DLIEKVWGADFYGTD-RVVDVYVSQVRRKIEALTGENLIRTARGVGY 221 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 121/217 (55%), Gaps = 6/217 (2%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++I+I+EDE +++Y +EGY V T +G E+ + + +DL++LD+ LPD +G Sbjct: 2 NNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGE 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + LR+ S V I ++T +S D+I GL +GAD+Y+TKPL REL RV L R+ Sbjct: 62 EVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGC 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ DN ++V + ++ GE I LT E+++L +N G++ +RE + Sbjct: 122 KKENVISFNDN-----KLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAI 176 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQH 219 + + D R++DV I+ LR K+ D Q+ Sbjct: 177 IERAFGMEFDGSD-RSIDVHIKNLRKKIEEDTKSPQY 212 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 7/225 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+D+P Q ++Y ++EG+ ++ A+GA ++ + DLI+LD+ LPD +G + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI-DLA 123 R +R ++ V I+ ++GR D ID+I+G +G DDY+TKP LV +VK+ + R +L+ Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + F ++ + R+G+PI L E+++L N G + S E L Sbjct: 126 GSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLF 185 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 + + D+RTV V I LR K+ D ++T G GY Sbjct: 186 DSIWGKDSFG-DIRTVMVHISNLRKKIEQDPARPEYIITVRGMGY 229 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 121/227 (53%), Gaps = 13/227 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + I++VED+ Q L E Y G E ++ DL++LD+NLP ++G Sbjct: 2 YKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGF 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + ++ R V +I++T R + +D+I G +G DDY+TKP EL++R+K +L R Sbjct: 62 SVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R ++ ++ +N+ + ++GEP++LT EY +L NP I ++E++ Sbjct: 122 GR-----GEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQI 176 Query: 183 L-RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 + R+ E+P++ V VL+RRLR K+ D ++ T G GY Sbjct: 177 MDRLWPDTFPEDPNI--VSVLVRRLREKIEEDPSSPRIIKTVWGVGY 221 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 132/240 (55%), Gaps = 14/240 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM--QNQSVDLILLDINLPD 58 M I+++ED+P + Y Y V +G +I+ + +++DLI+LD+ LPD Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 59 ENGLMLTRALR-----ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRV 113 +G+ + + +R + + V I+++T + D DR++GLEMGADDY++KP E REL+ R+ Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 114 KNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNP 173 + +L R + QA +Q + F + H + D +P++LT ++++L F T+ Sbjct: 121 RAVLRRHEQPNQAD--SQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHA 178 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 G++L+RE+L + + + R +DV I RLR + + ++T G GY A D Sbjct: 179 GKVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 238 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 117/212 (55%), Gaps = 5/212 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGA-GLREIMQNQSVDLILLDINLPDE 59 M I+++ED+ L Y +EGY V + G GLR L+L+D+ LP Sbjct: 12 MTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHP-HLLLVDLMLPKV 70 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + R +R++S V II+V+ R ID+I L +GADDY+TKP ELV RVK+ L R Sbjct: 71 DGFEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRR 130 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 R Q+ F G +N +R +E DG+P+ LT E+E+L+ PG++ S+ Sbjct: 131 --YHRYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSK 188 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS 211 E+L + ++ + D+RTV V I+ +R KL Sbjct: 189 EQLYNRV-WKQDDADDIRTVTVHIKNVRRKLG 219 >UniRef50_A9AXY0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXY0_HERA2 Length = 225 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 122/212 (57%), Gaps = 14/212 (6%) Query: 18 LQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGI 76 +Q Y Q G+T + + G AGL + Q+Q L++LD+ LP +GL + + +R+ S I Sbjct: 18 MQLYLEQAGFTTYLASDGLAGLALVQQHQP-SLVVLDLMLPKLDGLAVFKTIRQTSNTPI 76 Query: 77 ILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYR 136 I+VT RS +RI GLE+GADDYV KP RELV RV+ +L R++QP + Sbjct: 77 IMVTARSSDEERIHGLELGADDYVGKPFNARELVARVRAVL------RRSQPIQASQMLK 130 Query: 137 FAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDL 196 L++ +H+ + +P++L++ + +L F+ +P +ILSRE+LL + A D Sbjct: 131 RGPIELDLEQHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFAGDYAGFD- 189 Query: 197 RTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 R++D I RLR ++ D +VT +G GY Sbjct: 190 RSLDAHIARLRQRIEHDRTNPQYIVTVYGLGY 221 >UniRef50_Q2BM87 DNA-binding response regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BM87_9GAMM Length = 236 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 128/234 (54%), Gaps = 19/234 (8%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I ++EDE + S Y +G E + Q+ D+ ++D+NLPD +G+ L Sbjct: 10 IYVIEDERDLGELICSTLDGFRYRTEYCPTGTAALEQLAKQAPDICIVDLNLPDMDGMQL 69 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + E+ +G+I+V+GR DR++GLE GADDY+TKP E RELV RV++L R+ R Sbjct: 70 VKQFEEQE-IGVIIVSGRDGLTDRVLGLEFGADDYITKPFEPRELVARVQSLTRRL-RKR 127 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTL--ERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 Q++ Q RF + L E G+ L+RAE +ML+A + +P +ILSR++L Sbjct: 128 QSEVVDQPKTARFGLWSFQPESLCLRHEEKGDD-SLSRAEGDMLLALLKHPYQILSRDQL 186 Query: 183 LRMLSARRVEN--PDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L EN P R++DV + RLR K+ D L+ T +G GY ++V Sbjct: 187 LG-------ENCVPYDRSIDVRMSRLRKKIEEDPQQPELIKTVYGAGYMFTSEV 233 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 121/233 (51%), Gaps = 15/233 (6%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+IVEDEP L Y Y ++ + G + ++ DLILLD+ LP +GL L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R +R S + I++VT + + IDR++GLE+GADDY+ KP RE+V RVK +L R R Sbjct: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 + Q + + ++ R G+ + LT AE+ +L PG++ SRE+LL Sbjct: 133 ELQQQDAE-----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 Query: 185 ML--SARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAADVC 230 L R V + RT+D I+ LR KL + + +G GY AD C Sbjct: 188 HLYDDYRVVTD---RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 5/228 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +I++V+DE ++ Y EG+T+ + +G ++++ ++L +LD+ LPD + Sbjct: 1 MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + +RE +I++T + + ID+I GL +GADDY+TKP ELV RVK L R Sbjct: 61 GFTLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRF 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +P+ +++ F+G L++ H + + I LT E+ +L +N G ++S E Sbjct: 121 TKYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSE 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 L + + TV V IR LR K+ + T G GY Sbjct: 181 ELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGY 228 >UniRef50_C5SHJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SHJ8_9CAUL Length = 213 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 112/214 (52%), Gaps = 12/214 (5%) Query: 21 YFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 Y GY+V L +I+ Q+VD+I+LD+ LP E GL + R L R GI++V+ Sbjct: 4 YLEDNGYSVIRAPDAQALDQILAEQNVDVIVLDLGLPGEGGLSVCRRLDARLRPGILVVS 63 Query: 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGY 140 + DRI+GLE+GADDY+ KP REL+ R+K ++ R RQ D YRFAG+ Sbjct: 64 AAGEETDRIIGLELGADDYLPKPFSPRELLARIKAMIRRHSALRQGSSR-DDGIYRFAGF 122 Query: 141 CLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTV 199 R L G I LT E +L A + + +SRERL + ++ R Sbjct: 123 TYEAGKRRLLSPSGVVIALTMGECHLLSALLVSADGTVSRERL------QVADDGMGRAT 176 Query: 200 DVLIRRLRHKL----SADLLVTQHGEGYFLAADV 229 D+++ RLR K ++ +++T G+GY L V Sbjct: 177 DIVVSRLRKKFENHGASGIILTSRGKGYRLGCQV 210 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 128/224 (57%), Gaps = 9/224 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL-- 62 I ++ED+ L F +EG+ V +G E ++ + D+++LD+ +P+ +GL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 63 -MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L R+ +E + +I++T +S ID+IVGLE+GADDYVTKP REL+ RVK LL R Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRR-- 121 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 ++ T Y+F ++ + + G+P+ LT ++++L+A V + G++LSR+ Sbjct: 122 -SKSLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDY 180 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLS--ADLLVTQHGEGY 223 ++ + A + D RT+DV I++LR L + + T G GY Sbjct: 181 IIEHVWAWDKDVYD-RTIDVHIKKLRELLKEYGNCIKTIRGVGY 223 >UniRef50_B2V706 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=B2V706_SULSY Length = 224 Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 128/226 (56%), Gaps = 14/226 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTV-SVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +++++ED+ L Y + +V + S L E+ +NQS DL++LD+ LP+ +G+ Sbjct: 3 NVIMIEDDKELAELLTQYLAKFNISVKNFEHSKKALEELKKNQSYDLMILDLTLPEIDGI 62 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + L + + II+ + RSD D+I+ LE+GADDY+ KP RELV R++ +L R + Sbjct: 63 DICKMLAKEGNIPIIISSARSDDTDKILALEIGADDYLAKPYNPRELVARIQAVLRRKNK 122 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 A + C F L+ + ++++GEP+ LT AEYE+L + N G +L+R+ + Sbjct: 123 AVEKVIK----CGEFE---LDEEGYIIKKNGEPLNLTSAEYELLSMLIKNKGRVLTRDYI 175 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 L ++ D RTVDV+I R+R K+ D +++ G GY Sbjct: 176 LDNSIYLNYDSID-RTVDVIIGRIRKKIGDDPKNPKYIISVRGFGY 220 >UniRef50_C6D1N2 Two component transcriptional regulator, winged helix family n=3 Tax=Bacillales RepID=C6D1N2_PAESJ Length = 232 Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++VED+ + + +EGYTV A G E + D+I+LDI +P NG + Sbjct: 3 VLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGYEV 62 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R L ++ G++L+T ++D +D+++GLE+GADDY+TKP ++RE++ RVK L R Sbjct: 63 FRKLNQKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSHFTT 122 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 + G + T+ DG+ + LT E+++LV NP ++ SR+ LL+ Sbjct: 123 FKNSEIEKVTTEMGGLSIEPYSRTVRMDGQELDLTLKEFDLLVELACNPDQVYSRKVLLK 182 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLS--ADLLVTQHGEGY 223 + RTVD+ I+RLR KL L+ T +G GY Sbjct: 183 KVWDIHYAG-GTRTVDIHIQRLRKKLGRWHGLIQTINGIGY 222 >UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splendidus LGP32 RepID=B7VKB0_VIBSL Length = 244 Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 124/229 (54%), Gaps = 11/229 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+D L Y + +TV G + + ++ + DLI+LDI LP ++GL L Sbjct: 14 ILVVDDSQDILDALSEYLERSSFTVITALEGNEMWKKLEIVTPDLIILDIMLPGDDGLTL 73 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + LR +S V II++T +D DRI GLE+GADDY+TK REL+ R+K L L R Sbjct: 74 CQKLRLQSQVPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKAL-----LRR 128 Query: 125 QAQPHTQ-DNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 H+Q + +F + + + L+ DGE + L+ A+Y +L + +P ++LSR + Sbjct: 129 STFSHSQGERTLKFMDWTFDTLKRQLKHEDGEVVSLSSADYNLLTLMLDSPNQLLSRNDI 188 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAAD 228 + L R E P R +DV I RLR +L D ++T GY L D Sbjct: 189 AQALWGRDAE-PLERGIDVQISRLRKQLRDDDRNTIMTVRHRGYMLVID 236 >UniRef50_D0XTW5 Two component transcriptional regulator, winged helix family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XTW5_9CAUL Length = 241 Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 127/232 (54%), Gaps = 11/232 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++VED+ + + +Y + V A R+IM +++ + +LDINLP E+GL Sbjct: 12 EILLVEDDVELRREMAAYLRDNDHLVHEAGDAASARKIMAERAIQVAVLDINLPGEDGLS 71 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R+L I+++T D IDRI+GLE+GADDYV KP+ REL+ RVK +L R Sbjct: 72 LCRSLAGDGGPAILMLTALGDPIDRILGLELGADDYVVKPIMPRELLARVKAMLRR---- 127 Query: 124 RQAQPHT-QDNCYRFAGYCLNVSRHTLER-DGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R P + N YRFA + L+++ L +G + LTR+E +L A + +++ R+ Sbjct: 128 RPPGPAARKTNIYRFADFRLDLAARQLRAPNGAVLLLTRSELAILSALLDRDRQVVPRDE 187 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA----DLLVTQHGEGYFLAADV 229 L+ +L E R VD+ I RLR K+ +L+ T G GY L A V Sbjct: 188 LIALLRGDETEEVG-RAVDLHISRLRRKIQDQTDRELIRTYRGVGYMLDARV 238 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 10/224 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++VEDE + + +Y +E Y V+ G E DL++LD+ LP G + Sbjct: 11 ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGERV 70 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 RA+R+ S V II++T + + DRI+GLE+GADDY+ KP RELV RV+ LL R+ Sbjct: 71 CRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRV---- 126 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 A Q F ++VS H + G+ + LT +E+++L PG + SR L+ Sbjct: 127 HADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVE 186 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGY 223 + E + RT+D ++ LR K+ + L T HG GY Sbjct: 187 KVLGYDFEGYE-RTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGY 229 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +++V+DE + L+ Q+ V G E ++N D+ILLDI LP + Sbjct: 10 MAGRVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLD 69 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + + +RE S V II++T + D +D+I+GL+ GADDY+TKP + E+ R+K +L R Sbjct: 70 GLSVCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRN 129 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + Q + N + ++ +L + I LT E+++L NPG++ SR+ Sbjct: 130 --SSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRD 187 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 LL+ + + D RTVDV +RRLR K+ + + T+ G GY+ Sbjct: 188 NLLKAVWGQDYTG-DARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +HI IV+D+ + +++Y +EGY + S + Q DL +LDI LP NG Sbjct: 4 YHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNGY 63 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R +R S II+V+ R + +D+I+GLE+G+DDY+TKP RELV RV L R Sbjct: 64 EFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR--- 120 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +Q + H + + L+ + + GE +++T E+++L +P SR+ L Sbjct: 121 WKQMKSHAEQTA--ISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDEL 178 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFL 225 L ++ D R VD LIRR+R KL L T G GY L Sbjct: 179 LSLIWGFDYFGSD-RVVDDLIRRIRKKLDKIPLETVWGFGYRL 220 >UniRef50_Q1GKH2 Two component transcriptional regulator, winged helix family n=28 Tax=Rhodobacterales RepID=Q1GKH2_SILST Length = 239 Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 10/232 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 + I++DEP + L GY + ++ + D+ L+D++LPD +GL L Sbjct: 10 VTILDDEPEIRQLLTETLEDAGYRTQSFSRARDFEAALKRVTPDVCLVDLSLPDTDGLAL 69 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 L +I+++GR+ DR+ GLE+GADDY+TKP + E+V R++ L D +R Sbjct: 70 VHRLALEQGASVIIISGRAQVQDRVTGLELGADDYITKPFDPAEVVARIRVRLR--DTSR 127 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 QP T D F+G+ + R+ LE +GE + AE E+L F+ +P ++SR +++ Sbjct: 128 GGQPDTGDRA-EFSGWTAHFDRYALEDENGEETAFSHAEGEVLRLFLESPKRLISRAQMM 186 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 L ++ D R +DV I RLR KL D L+ T +G GY DV Sbjct: 187 ERLGGGAGDSFD-RAMDVRISRLRTKLREDPKNPRLIKTIYGAGYIFLGDVS 237 >UniRef50_B7RXJ1 Response regulator receiver domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RXJ1_9GAMM Length = 219 Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 121/214 (56%), Gaps = 9/214 (4%) Query: 24 QEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 +EG+ V S EI + +D++LLD+N+P +G + + L +GII +TG + Sbjct: 3 KEGFDVHSATSSPSALEIFSSLDIDIVLLDLNIPGTHGFEIAKELLSLKKIGIIFITGST 62 Query: 84 DRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNC----YRFAG 139 +++D+IVGLE+GADDY+ KP + REL+ R++++L R+D ++ F Sbjct: 63 EQVDKIVGLELGADDYIQKPFDFRELLARIRSVLRRLDHVTDNSSGSESEAGHLKAHFGN 122 Query: 140 YCLN-VSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRT 198 + L+ +++ +D +LT EY +L+A + + +L R+ LL +S+R P R+ Sbjct: 123 WQLDCLTQEISGKDNATPELTSHEYFILLALLKSNNRVLPRDFLLNAISSRNW-TPYDRS 181 Query: 199 VDVLIRRLRHKL---SADLLVTQHGEGYFLAADV 229 +DVL+ +LR KL + + + T G+GY + V Sbjct: 182 IDVLVGKLRKKLQCENGEYIKTIRGQGYKFCSAV 215 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 117/213 (54%), Gaps = 4/213 (1%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++++IVEDE ++ Y +GY V ++G EI++NQ++ L ++DI +P +G+ Sbjct: 4 YNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGI 63 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID- 121 + LRE +I++T +S+ +D+I+GL +GADDYVTKP EL+ RV + L R Sbjct: 64 TMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSK 123 Query: 122 -LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 L+ + + N + G LN + DGE IK+T E+++L + NPG + S E Sbjct: 124 YLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAE 183 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD 213 + + N D TV V +R +R K+ D Sbjct: 184 EIYEKVWNEEAINTD--TVMVHVRNIREKIEID 214 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 6/234 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + I+IVED+ L+ + V G E Q++ DLILLD+++P N Sbjct: 6 MANQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLN 65 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R LR+ II+VT +++ ID+++GLE+GADDY+TKP +REL R K ++ R Sbjct: 66 GVEVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRS 125 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D A Q ++ F +NV + +G+ I L+ E+++L+ PG SR Sbjct: 126 DAANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRS 185 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAADV 229 LL ++ + TV+ I RLR K+ D+ ++T G GY D+ Sbjct: 186 ELLDVIWGYNFSGYE-HTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNEDI 238 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 122 bits (307), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 10/224 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++V+D+ + + Y G+ V A G + + DL++LD+ LP +G+ + Sbjct: 58 VLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIEV 117 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R LR V +I++T R+D DRI GLE+GADDYVTKP REL +RV+++L R A Sbjct: 118 FRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRR---AN 174 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 + P + R ++ + T R G P+ LT E+++L + PG +R LL Sbjct: 175 ETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLE 234 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 + +P TV V IRRLR K+ D +LVT G GY Sbjct: 235 HVWGWSYGDPS--TVTVHIRRLREKIEDDPTAPRMLVTVWGVGY 276 >UniRef50_UPI00003844D5 COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003844D5 Length = 221 Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 21/228 (9%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 +++ED+ + Y G+ V+ S + + Q ++LLD++LPDE+GL++ Sbjct: 1 MVIEDDLALGQLMSDYLELGGFAVTHVTSAGQAFDFLARQMPAMVLLDLSLPDEDGLVVL 60 Query: 66 RALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQ 125 R LR ++ I +V+GR D +RIVGLEMGADD++TKP RELV RV+N+L R+ Sbjct: 61 RRLRAVGSLPIAIVSGRDDSENRIVGLEMGADDFITKPFVGRELVARVQNIL------RR 114 Query: 126 AQPHTQDNCYRFAGYCLNVSRH-TLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 +Q G + H + R GE I LT AE +L A + G LSRE+L+ Sbjct: 115 SQGGEAKPALEIDGLVMRTEDHFVVGRQGERIALTPAESSVLRALIAANGRTLSREQLMD 174 Query: 185 MLSARRVENPDL----RTVDVLIRRLRHKL-----SADLLVTQHGEGY 223 N DL R++D++I RLR KL + L++T G GY Sbjct: 175 AHG-----NLDLAETTRSIDIVISRLRGKLERSRKTPTLILTVQGVGY 217 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 118/224 (52%), Gaps = 13/224 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++V+D+ L +EGY + + G Q D++LLD+ LP NGL + Sbjct: 18 VLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQI 77 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + +R +STV I+++T + D ID + GLE GADDYVTKP + ELV RV+ L R + Sbjct: 78 CQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG- 136 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 Q ++V H + RDG PI LT E+++LVA P ++ +RE LL Sbjct: 137 ------QAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLE 190 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 + R D R V+V ++RLR K+ D +++T G GY Sbjct: 191 QVWGYR-HAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGY 233 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 15/236 (6%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN--QSVDLILLDINLPDENGL 62 ++++ED+P + Y Y V + E + N +S+DL++LD+ LPD +G+ Sbjct: 11 VLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMDGM 70 Query: 63 MLTRALRER-----STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 + + +R+ + II++T + D DR++GLEMGADDYV+KP E REL+ R++ ++ Sbjct: 71 QVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRAVM 130 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R DL Q +DN F + H + D EP++LT ++++L F T+ G++L Sbjct: 131 RRHDLPLHQQ--KEDNLV-FGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSGKVL 187 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 SRE+L + + R +DV I RLR + + ++T G GY A D Sbjct: 188 SREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 243 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++ +DE + L S +EGY ++G E ++ ++ L+LLD+ +P+ +GL Sbjct: 8 ILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLTA 67 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 +RE S V IIL+T RS+ +DRI GL++GADDY+TKP REL+ R++ L R Sbjct: 68 CMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSFS 127 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 + Q T D +++ + G+ + LTR E+++L F+TN ++ SRE+LL Sbjct: 128 KEQEATFD----VGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLD 183 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKL--SADLLVTQHGEGYFLAAD 228 + + +LRTVD I+ LR KL + + T G GY A+ Sbjct: 184 QIWGTEY-HGNLRTVDTHIKTLRLKLGEAGGYIQTVWGIGYKFEAN 228 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 117/224 (52%), Gaps = 10/224 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+++ED+ +A ++ T +G+ V SGA E+ D++L+D+ LPD +G Sbjct: 21 ILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFEC 80 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R LR S V II+VT R+D D + GLE GADDYVTKP E++EL R++ LL R A Sbjct: 81 CRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRSAG 140 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 D + + R+GE + LTR E+ +L + P + SRE+LL Sbjct: 141 GPAGEVID----IQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLE 196 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 + D R VDV +RRLR K+ D +LVT G GY Sbjct: 197 RVWGYDYFG-DGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGY 239 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 11/224 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++I+EDE +++Y E Y VT +G I Q QS D ++LD+ LPD +G + Sbjct: 8 VLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEEI 67 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + +R +S V I+++T + + DRI GL++GADDY+TKP +ELV RV+ ++ R + Sbjct: 68 CKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTN--- 124 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLE--RDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + G L V +E + E ++LT E+++L F+ N G++ SR+ L Sbjct: 125 --NEGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDEL 182 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGY 223 + + D RT+DV I+ LRHK+ + +VT +G GY Sbjct: 183 VVKVLGYDYVGYD-RTIDVHIKNLRHKIECEYYKYIVTVYGVGY 225 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + I+I +DE L Y EGY A+G + +I+ + VDL+LLD+ +P+ +G+ Sbjct: 6 YTILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGM 65 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R LR + +I+VT +SD DR+ GL GADDY+ KP +EL+ R++ + R + Sbjct: 66 EALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRR-NY 124 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ Y+ LN + + DGE + LTR E+++LV F+ +P ++ +RE+L Sbjct: 125 GYNDDESKEELQYKSIKVNLNSRKVFI--DGEAVSLTRKEFDLLVHFMKHPEQVFNREQL 182 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFL 225 L + RTVD ++ +R K+ + D T +G GY L Sbjct: 183 LDHVWGVNYTTGGHRTVDTHMKTMRFKMGSGGDYFRTVYGVGYVL 227 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 14/233 (6%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I +V+DE ++SY GY V V +G + + DLI+LD+ LPD G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID- 121 + LR+RS V II++TG++D D + GL++GADDY+TKP R+LV RVK LL R + Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 129 Query: 122 --LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + + DN +N + +++ G + LT EY +L+ + PG+I +R Sbjct: 130 ELGEKNSLFSLNDN-----DLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTR 184 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAA 227 E L+ + + + D RT+D I+ LR+K+ + +VT G GY + Sbjct: 185 EELIIVTLGQNFKGYD-RTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKFGS 236 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 127/226 (56%), Gaps = 10/226 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++I +DE + L+ Y +E YTV G ++ + + +L++LD+ +P +G+ + Sbjct: 6 VLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGIEV 65 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R LR + + I+++T + +D+IVGL +GADDY+TKP + E++ R+K L+ R L Sbjct: 66 CRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRF-LVL 124 Query: 125 QAQPHTQDNC-YRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + +TQ+ F G +++S++ + + I LT E E+L F +NP ++ ++ +L Sbjct: 125 GSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQLF 184 Query: 184 R-MLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 R + + +E D TV V IR+LR K+ AD + T G GY Sbjct: 185 RNVWDSNYIE--DDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGY 228 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 125/230 (54%), Gaps = 19/230 (8%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGA-GLREIMQNQSVDLILLDINLPDEN 60 P ++I++D+ A L Y + G+TV A GLR + + DL++LD+ LPD + Sbjct: 15 PTRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPP-DLVILDVMLPDTD 73 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R +R S + II++T R D DRIVGLEMGADDY+ KP E RELV R++ +L R Sbjct: 74 GLAVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR- 132 Query: 121 DLARQAQPHTQDN--CYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 T+D+ R +N + ++ ++LT AE+E+L N G ++S Sbjct: 133 --------GTRDDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMS 184 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 R+R+L + D R++D+L+ RLR KL D + T G GY Sbjct: 185 RDRILDGTRGIDWDAYD-RSIDILVSRLRQKLGDDPKRPTFIRTVRGVGY 233 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 120/209 (57%), Gaps = 6/209 (2%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDENGLM 63 I++++D+ + + + EG+ V G +GL + Q+Q +L ++DI +P +NG+ Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQ-FELAVVDIMMPGKNGMD 61 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R LR+ S++ +I++T R + +DRI+GLE+GADDY+ KP REL R++ +L R D Sbjct: 62 LLRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQ 121 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 +++ + RF + T+ GEP+ LT EY +L + + GE++S+ L Sbjct: 122 QESDDKQE---TRFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELS 178 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSA 212 + +R P RT+DV I LR K+SA Sbjct: 179 QAALGKR-HGPFDRTLDVHIGHLRKKISA 206 >UniRef50_A9BP07 Two component transcriptional regulator, winged helix family n=14 Tax=cellular organisms RepID=A9BP07_DELAS Length = 239 Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 9/227 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++VED+P + ++G V A R Q Q D +LLD+ LPD NGL Sbjct: 12 VLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNGLDW 71 Query: 65 TRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R LR+ + V +++++ R + +DR++GLE+GADDY+TKP RELV R + LL R+ Sbjct: 72 CRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRVQRL 131 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + A + + ++ + G P++LTR EY++L + PG ILSRE LL Sbjct: 132 QPAPTASAAPADAL--FSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSREFLL 189 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFL 225 + + ++ D RTVD ++ LR KL A D + T G GY L Sbjct: 190 DSIWGQDSDSTD-RTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 235 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 10/229 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+D+P + +EGY V +++ N+SVD+ ++DI LP +G Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87 Query: 63 MLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 L R LR + ++ ++ + + D+++GLE+GADDY+TKP +RE++ R+K + R Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 I L+ Q + G ++V R+ ++ + + LT E+E+L N G++ SR Sbjct: 148 IQLSAQEREERPKKIVA-KGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSR 206 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 + LL L D RTVDV IRRLR K+ D ++T G+GY Sbjct: 207 DVLLDKLWGYDYYG-DTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGY 254 >UniRef50_C8NC13 DNA-binding response regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NC13_9GAMM Length = 219 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 119/227 (52%), Gaps = 17/227 (7%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI+++ED+P L +E + V +G +Q Q D I+LD+ LPD +G Sbjct: 3 HILLIEDDPAIADPLSYALAREQWQVVWHDTGIAALAALQAQRFDCIVLDVGLPDTDGFE 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R +R++ T +I ++ R++ IDRIVGLE+GADDY KP REL+ R+K + R + Sbjct: 63 LCRRIRQQWTTPLIFLSARNEEIDRIVGLELGADDYCGKPFSNRELISRIKAVCRRSNET 122 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 A + + N S T+ G + LTR EY +L + +PG+ R++L+ Sbjct: 123 ETA-----------SVWQHNDSAQTISYHGTTLDLTRYEYRLLRHLLAHPGQTFDRDQLV 171 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFL 225 L ++ D RTVD I+ LR KL AD + T+ G GY L Sbjct: 172 NTLWD-HPDHIDNRTVDSHIKTLRQKLRAIAPDADPIRTRRGYGYHL 217 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 10/228 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE-NGLM 63 I+IV+DEP ++ GY V A G E++++ DL++LDI LP NG Sbjct: 6 ILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGPLNGFE 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +RE S + II++TGR+ DRI G + GADDYVTKP + EL++RVK +L R + Sbjct: 66 VCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRR---S 122 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 ++ + Y+F +N ++ + G ++LT EY++L N G++++ E LL Sbjct: 123 HPSEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHEDLL 182 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 + N +L + I LR K+ D ++ +HG GY+LA Sbjct: 183 TRVWGAEYRN-ELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYLA 229 >UniRef50_Q16CN7 DNA-binding response regulator PetR, putative n=12 Tax=Alphaproteobacteria RepID=Q16CN7_ROSDO Length = 233 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 126/235 (53%), Gaps = 18/235 (7%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IV+D+ + LQ + + G+ V+ A R I+ DLI+LD+ +P E+GL Sbjct: 7 HLLIVDDDERIRTLLQKFLMRNGFLVTAARDAAHARRILLGLDFDLIVLDVMMPGEDGLA 66 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 TRALRE + V I+L+T + D +RI GLE GADDY+ KP E +EL++R+ +L R+ Sbjct: 67 FTRALRETNAVPILLLTAKGDTDNRIEGLEAGADDYLPKPFEPKELLLRINAILRRV--- 123 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLER----DGEP-IKLTRAEYEMLVAFVTNPGEILS 178 P ++ L R+ LER GE ++LT E ++ F + E +S Sbjct: 124 ----PEVLEDATAPKVLSLGPIRYDLERGELWQGEDLVRLTATEMHLMKIFSASCNEAIS 179 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 R +L+ L R + + R VDV I RLR K+ +D L T G GY LA D Sbjct: 180 RAKLVEELGRDRGQAQE-RAVDVQITRLRRKIESDPKQPRYLQTVRGAGYMLAPD 233 >UniRef50_Q3IDF5 Putative response regulator in two-component regulatory system n=3 Tax=Alteromonadales RepID=Q3IDF5_PSEHT Length = 239 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 134/239 (56%), Gaps = 14/239 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ-----SVDLILLDIN 55 M H+++VED+ + R+Q++FT +T+ V +GA ++++ + L ++DI Sbjct: 1 MTIHVLLVEDDELLVKRIQNHFTNTEFTIEVDPTGADALSTIRSRVNLRGAFSLAIIDIV 60 Query: 56 LPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKN 115 LP +GL L + L + +G+IL++ R + DRI GL GADDY+ KP++L EL +R++ Sbjct: 61 LPKRDGLQLAKELNTLTDIGVILLSSRDSQADRIAGLAQGADDYICKPVDLLELELRMRA 120 Query: 116 LLWRI---DLARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVT 171 L RI + + +A + L+ TL G +LT AE+++L+ + Sbjct: 121 LYKRIAHLNSDNDKNDDNGEEFIEYADFKLHPDNRTLITATGAESRLTEAEHKVLICLIG 180 Query: 172 NPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL----LVTQHGEGYFLA 226 N G+ SRE++ + + +P+ RTVDVLI RLR KL+ + +VT G+GY L+ Sbjct: 181 NAGKATSREKISEEI-GQPDWSPNDRTVDVLIGRLRKKLNDEKDQKRIVTVRGKGYMLS 238 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/244 (36%), Positives = 127/244 (52%), Gaps = 24/244 (9%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVS-VTASGAGLREIMQNQSVDLILLDINLPDENG 61 H I++VEDE + +EGY V VT + +N DLI+LD+ LP +G Sbjct: 2 HRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFEN-DYDLIILDLMLPGLDG 60 Query: 62 LMLTRALRERST--VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 L + R +R S+ + +I++T +SD I++IVGLEMGADDYVTKP REL+ RVK L R Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQL-R 119 Query: 120 IDLARQAQPHTQDNCYRF-------------AGYCLNVSRHTLERDGEPIKLTRAEYEML 166 +QDN + + ++ + + ++LT E+E+L Sbjct: 120 GRTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELL 179 Query: 167 VAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGE 221 VTN G++L+RE+LL + D RTVDV IR LR K+S DL+ T G Sbjct: 180 NIMVTNSGQVLTREKLLEKIWGYDFLG-DTRTVDVHIRHLRQKISEAGGPPDLVETVRGI 238 Query: 222 GYFL 225 GY L Sbjct: 239 GYRL 242 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 119/208 (57%), Gaps = 4/208 (1%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++ +D+ ++ YF EGY V+ +G E+M D+++LD+ +P+ +G Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + +R +S+V +I++T + D IDRI+GLEMGADDY++KP REL+ R+K +L R Sbjct: 63 TLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQE 122 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 R+ P + +G L T+ +GE ++LT +EY +L + PG++L+++ L Sbjct: 123 REDDPTADID---LSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELS 179 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLS 211 R++ D R++D+ I LR K+ Sbjct: 180 EKALGRKLTMYD-RSLDMHISNLRKKIG 206 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 11/228 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED+P + Y EG+ + G + + D ILLD+ LP + Sbjct: 1 MAKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGID 60 Query: 61 GLMLTRALRER---STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + R +++ S +++VT + + DR+VGLEMGADDY+ KP +E+V RVK +L Sbjct: 61 GLTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R R+ Q + +++ RH +G P LT E+++LVA + G +L Sbjct: 121 RR----RETQQRLTERM-SIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVL 175 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKL--SADLLVTQHGEGY 223 RE LL + E D RTVDV IRRLR K+ SA + T GY Sbjct: 176 DRETLLNTVWGDDYEGTD-RTVDVHIRRLRKKMGESAAWVETVKQIGY 222 >UniRef50_D0Z2F0 DNA-binding response regulator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2F0_LISDA Length = 249 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 12/234 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + ++I+ED+ Q L YF +G+TV + G G E++++ + D++LLD+ LP +GL Sbjct: 19 YSLLIIEDDLKLQQMLADYFLTQGFTVQTHSDGNGAIELIESSNPDIVLLDLMLPGNDGL 78 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R + ++++T +D D + LE+GADDYV KP++ R L+ R++ LL R Sbjct: 79 TICRQVRGKYQGKLMMLTASNDDFDHVAALEIGADDYVVKPIKPRVLLARMRMLLRR--- 135 Query: 123 ARQAQPHT--QDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + QP T N + L+ +R E G+ I +T +E+++L ++P LSR+ Sbjct: 136 -AKIQPDTPVNLNVLTYGNLTLHKNRKLCEFSGQKICMTDSEFDLLWLLASSPDAPLSRD 194 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAADV 229 L + L + D RT+D I LR KL D ++T G+GY D Sbjct: 195 FLTKELRGIEYDGID-RTIDNKIVSLRKKLLDDSSTPQRIITVRGKGYLFVPDT 247 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 123/233 (52%), Gaps = 13/233 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDE 59 M I++ ED+P L EGY V G + L E M QS DLILLD+ LP Sbjct: 1 MTPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAM-GQSYDLILLDVMLPRR 59 Query: 60 NGLMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 +G + + LRE V I+++T R + +D++VGL+ GADDY+TKP E+ EL+ R++ LL Sbjct: 60 SGFDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLR 119 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R + R T ++ G ++ R + R G+P+ L+ EY +L + + GE ++ Sbjct: 120 RAPVRRSLNAGT----FQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVT 175 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 RE LL + D RTVDV + LR KL + L T G GY L+ Sbjct: 176 REDLLTQVWGYSATT-DTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLS 227 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 7/229 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED A + Y V+ + GA + Q+ DLI+LDI LP + Sbjct: 1 MQKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMD 60 Query: 61 GLMLTRALRERSTVG-IILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 GL + + LR ++ I+++T + DR+VGLE GADDY+TKP +REL RVK L R Sbjct: 61 GLQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D++++ D+ F C++ ++ L + I LT E+++L+ ++PG++ SR Sbjct: 121 TDMSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSR 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 E+LL + + + TV+ I RLR KL D ++T G GY Sbjct: 181 EKLLDAVWGYQHSGYE-HTVNSHINRLRTKLETDTSNPKYVLTVWGVGY 228 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 123/212 (58%), Gaps = 6/212 (2%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++V+DE ++ T+ G+ + +G EI Q+ DLILLD+ LPD +GL + Sbjct: 6 LLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDIDGLEV 65 Query: 65 TRALR--ER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI- 120 R +R ER II++T +S+ D+++GL +GADDY+TKP LREL RV+ +L R+ Sbjct: 66 CRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRRVM 125 Query: 121 -DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + A+ T N + ++V+RH +++ E I+ T +E+++L + +LSR Sbjct: 126 DSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLEHVLSR 185 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS 211 LL ++ + PDLR VDV IR +R KLS Sbjct: 186 SLLLEEVTGEK-STPDLRIVDVHIRNIRKKLS 216 >UniRef50_C0Z4B7 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z4B7_BREBN Length = 233 Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS-VDLILLDINLPDEN 60 P+ + +V+DE LQSY G V +SG + ++ ++ L +LDI +PD + Sbjct: 4 PYLVYLVDDETNLLDLLQSYLQNAGLQVKAFSSGKDVLPLLDEETQPHLWILDIMMPDID 63 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L R +RE+S V II ++ R +D+I+GLE+G+DDY+ KP RELV+R K LL R Sbjct: 64 GYELLRLIREKSNVPIIFISARDQDVDKIIGLELGSDDYLAKPFLPRELVIRAKKLLQRT 123 Query: 121 ---DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 A + T + Y ++ ++ E I LT E+E++V + N G L Sbjct: 124 YEKPGAAASSTQTFQDWVTIDPYIISEKGRQVKEGDELIDLTTKEFELIVYLLHNQGLAL 183 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGY 223 +RE++L + D R VD L++R+R K+ L T +G GY Sbjct: 184 NREQILTSIWGEDYIGSD-RAVDDLVKRIRKKMPKFPLETVYGFGY 228 >UniRef50_A5N610 Transcriptional regulator n=20 Tax=Bacteria RepID=A5N610_CLOK5 Length = 228 Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I +VEDE L+ Y EGY V+ + G+ + +++ DL +LDI LPD N Sbjct: 1 MSKKIYLVEDELNLNILLEKYLKNEGYDVTTFSDGSCAKNRIKDMP-DLWILDIMLPDIN 59 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G L + ++E + +I ++ +++ DR+VGLE+G+DDY++KP RELV+R NL+ + Sbjct: 60 GYALIKCIKENNENTPVIFISAKNEEFDRVVGLELGSDDYLSKPFLPRELVIRTNNLIEK 119 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 I TQ+ + Y +N + T+ G+ ++LT E+++L N + R Sbjct: 120 I---YGTTNETQNLNIQIGQYLINKKQRTVLFKGKELRLTSKEFDLLSYLAENKNSLTLR 176 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFL 225 E++L + R VD IRRLR K++ + T +G GY L Sbjct: 177 EQILTNVWGNNYFGSS-RVVDDTIRRLRKKVNKLTIETIYGYGYKL 221 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 12/233 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 HI+I +D P L +Y +E + A G + + + ++LLD+ +P E+G Sbjct: 2 QHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGY 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R +S V +IL+T R + ++I+GL++GADDY+ KP E++ R++ +L R + Sbjct: 62 EVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRR--M 119 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ T +N A +N+ +TL G I LT+ E E + +NP ++ +R+ L Sbjct: 120 TKKENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNL 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADLL-------VTQHGEGYFLAAD 228 L L D RTVD I+RLR KL D+L T G GY D Sbjct: 180 LDSLWGFDYFG-DSRTVDSHIKRLRAKL--DMLEHPNWSIKTIWGVGYKFEVD 229 >UniRef50_UPI0001C31E43 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31E43 Length = 251 Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 127/236 (53%), Gaps = 23/236 (9%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINL-PDENGLM 63 I++V+DE + L FT+EG+ V A G E ++S D++LLD+ L NG Sbjct: 25 ILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVALGSGPNGYE 84 Query: 64 LTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R LR R+ V II++T D ++GLE GADDYVTKP L EL R++ +L Sbjct: 85 VCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVL----- 139 Query: 123 ARQAQPH---TQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 R+A P D+ L+ +R + +GEP+ +T +E+E+L A + +PG + +R Sbjct: 140 -RRAGPRPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRLRNR 198 Query: 180 ERLLRML---SARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAA 227 + LLR + SA R D R +DV +R LR KL S +VT G GY L A Sbjct: 199 QELLRAIWGDSAYR----DPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRLQA 250 >UniRef50_C1A8B6 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8B6_GEMAT Length = 245 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 127/232 (54%), Gaps = 12/232 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDENGLM 63 I++VED + A ++S EGY V+V A+G GLR + ++++ LI+LD+ LPD +G Sbjct: 14 ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLR-LAKSRAHALIVLDLMLPDIDGFR 72 Query: 64 LTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R LRE ++++T D D++ G GADDYVTKP L E + RV+ LL R Sbjct: 73 VLRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRRSRT 132 Query: 123 ARQAQ--PHTQ-DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 A+ A P Q DN RF +++S ++ +G + L EY++LVA V G I SR Sbjct: 133 AKPAHDVPTVQADNTRRFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIASR 192 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 E LLR + ++ RTVD + LR KL D L+T GY +A Sbjct: 193 EELLREVWGYD-DSVVSRTVDTHMAELRRKLETDPSEPRWLLTVRKTGYRMA 243 >UniRef50_A4EGJ5 Two component transcriptional regulator, winged helix family protein n=4 Tax=Rhodobacteraceae RepID=A4EGJ5_9RHOB Length = 236 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 127/232 (54%), Gaps = 12/232 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 + +++D P ++ L Q G+ V A + + + D ++D+ LPD +GL L Sbjct: 7 VTVLDDTPEIRSILSDALEQAGFRVRSFGRAADFEQACKTITPDACIIDLGLPDSDGLAL 66 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 +S V I++++GRS D+IVGLE+GADDY+ KP E+ E++ R++ +L R + Sbjct: 67 VHRFASQSDVPILIISGRSRTQDKIVGLELGADDYIIKPFEVEEVIARLRVILRRTN--- 123 Query: 125 QAQPHTQD-NCYRFAGYCLNVSRHTLERD-GEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 A+ D +F G+ +++ L ++ GE LT AE E+L F+ +P ++ RE++ Sbjct: 124 -AESVKSDAKTVQFCGWTADLNLLQLTKETGENQSLTFAENEILKMFLASPNRLIKREQI 182 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L L + + D R++DV + RLR KL D ++ T +G GY A+V Sbjct: 183 LDYLGSSADDAYD-RSIDVKVSRLRTKLGDDAQNARIIKTVYGAGYIFIAEV 233 >UniRef50_B8FS42 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=B8FS42_DESHD Length = 228 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 116/229 (50%), Gaps = 12/229 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + I+IVED+ + F + T + R+ ++N S+ L++LD+NLPD NGL Sbjct: 5 NKILIVEDDLALSEGIVLAFKDNNFAFVQTRNLTEARQAVRNTSIQLVILDLNLPDGNGL 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + LR S V +I++T D + GLE+GADDY+TKP L L RV L Sbjct: 65 EFLKELRRTSAVPVIILTANDLETDVVRGLELGADDYITKPFSLMILRARVNARL----- 119 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R A P D G+C + ++ +DG PI+L++ E ++L + N G+ L+R +L Sbjct: 120 -RNAHPSAGDTV-EIEGFCFSFAKMEFAKDGVPIELSKTEQKLLRLLLENRGQTLTRAQL 177 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLA 226 + + E D + V + RLR+KL S + T +G GY A Sbjct: 178 VDAIWTEGAEYVDENALSVTVNRLRNKLEDLPSSPRFIKTVYGIGYTWA 226 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 13/228 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+D+ + +G+ A G E+ ++ DL+LLD+ LP + Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R +R S V I+++T +SD D + GLE GADDYV KP + ELV RV+ R+ Sbjct: 90 GIEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRA---RL 146 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 Q P T R A ++V+ H + R GE I LT E+++LVA P ++ +RE Sbjct: 147 RPGDQKAPET----LRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRE 202 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 LL + R D R V+V ++RLR K+ D +++T G GY Sbjct: 203 LLLEQVWGYR-HAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGY 249 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 7/226 (3%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 ++VED+ + Y T+EG+ + G + Q S DL+LLDI LP NG+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 66 RALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQ 125 + +RE+S + +++++ + +D+ +GL GADDY+ KP + EL RVK + R Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSA 120 Query: 126 AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRM 185 +P + R +++ ++ ++GEP++LT E+++L F +NP ++ ++E++ R Sbjct: 121 EEPAV-NKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRS 179 Query: 186 LSARRVENPDLRTVDVLIRRLRHKLSADLLVTQH-----GEGYFLA 226 + + D ++V +RRLR K+ D Q+ G GY L Sbjct: 180 VWNEEYFD-DQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLG 224 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 116/229 (50%), Gaps = 11/229 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++VEDE + L+ + QE + V EI++ VDL++LD+ +P +G Sbjct: 7 VLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWTT 66 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R +RE S V I+ +T R + DR++G E+GADDYV KP RELV+RVK LL R Sbjct: 67 CRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSSTP 126 Query: 125 ----QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +AQ T + F L GE + L+ EY++L+ N G +LSR+ Sbjct: 127 PQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLSRD 186 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS------ADLLVTQHGEGY 223 LL + D RTVD +RRLR KLS A + T G GY Sbjct: 187 LLLDRVWGYEFAG-DSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGY 234 >UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bacteria RepID=Q4K4R2_PSEF5 Length = 229 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 116/228 (50%), Gaps = 14/228 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MPH I+IVEDE L EG+T + + G E Q DLI+LDI LPD + Sbjct: 4 MPH-ILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGLPDIS 62 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + LR S V ++ ++ R IDR+VGLE+GADDYV KP RE+ RVK +L R+ Sbjct: 63 GFETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRM 122 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + R A A + ++ R + G+P+ LTR E+ +L + P + SRE Sbjct: 123 -VPRVAPEAVA------ALFVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSRE 175 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGY 223 +LL L + R +D I+ LR KL A+ + T G GY Sbjct: 176 QLLDALGVMADVGYE-RNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGY 222 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 14/232 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++VED+ V Q + +EGYTV + G E++ + DL+LLD+ LP+ +GL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 64 LTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + + +R E + + +I+++ R + DR++GLE+GADDY+TKP REL+ R+K L Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARL--- 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNV--SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R+ + ++ L + + + GE + LT E+E+L F+ P ++ S Sbjct: 120 ---REERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFS 176 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLS--ADLLVTQHGEGYFLAAD 228 RE LL+ + V D RTVDV I LR KL + ++ + G GY LA + Sbjct: 177 REYLLQKVWGYTVSG-DTRTVDVHISNLRSKLKSVSPIIESVRGVGYRLAVN 227 >UniRef50_B2SJA5 Two-component system regulatory protein n=11 Tax=Proteobacteria RepID=B2SJA5_XANOP Length = 247 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 15/224 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IVEDEP A + +Y G++ A GA + + DL+LLD+ LP+ +GL Sbjct: 21 HVLIVEDEPRLAAVVGAYLHAGGHSHDWIADGAQALGAFRAKKPDLVLLDLMLPNRDGLE 80 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LR+ S V +I+VT R + IDR+ G+E+GADDY+ KP RE+ RV+ +L Sbjct: 81 ICRDLRKESAVPVIMVTARVEEIDRLRGVEIGADDYICKPFSPREVAARVQAVL------ 134 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLER--DGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 P + + Y L++ DG + LT+ + +L PG + SRE Sbjct: 135 ----PRHRHDPYGAPAPGLHIDEDACRASVDGRALDLTQVAFRLLRTLAAAPGRVCSREH 190 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLS--ADLLVTQHGEGY 223 + LSA D RTVD ++ LR KL+ D + + G GY Sbjct: 191 RMGRLSADHRSVTD-RTVDSHVKNLRRKLADGEDWVRSVSGAGY 233 >UniRef50_B2IFK7 Two component transcriptional regulator, winged helix family n=89 Tax=Alphaproteobacteria RepID=B2IFK7_BEII9 Length = 273 Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 124/234 (52%), Gaps = 17/234 (7%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IV+D+ +A L + +GY V+ + ++N + DLI+LD +P ENG Sbjct: 47 HLLIVDDDRRIRALLARFLADQGYRVTTAGNAEEATASLRNFAFDLIVLDAMMPGENGFD 106 Query: 64 LTRALRERST----VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 L LR + + V ++++T ++ DR+ G E G+DDY+ KP E REL +R+ ++L R Sbjct: 107 LLTRLRAQPSDLAHVPVLMLTACTEPEDRVRGFEAGSDDYLGKPYEPRELALRIASILRR 166 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + P TQ RF + ++ R L++ GE ++LT E +ML N GEI+SR Sbjct: 167 AQPRAVSGPVTQ---VRFGDFTFDLERGELQQGGEIVRLTERERDMLRLLAENAGEIVSR 223 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 E L + + RTVDV + RLR K+ DL L T G GY L D Sbjct: 224 EALAGLGIGG-----NERTVDVQVNRLRRKIERDLANPLHLQTARGAGYRLLVD 272 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 12/228 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDENGLM 63 +++VEDEP ++ Y T++G+ V + G AGL + + V +L DI LP G Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVL-DIALPGLAGTE 69 Query: 64 LTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R LRE ++ +T R D +DRI+GLE+GADDYVTKP RELV RV+ +L R Sbjct: 70 ICRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRT-- 127 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 P + L+ +R T+ GEPI+LT E+++L + PG + +R L Sbjct: 128 --VGVPEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGEL 185 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKL--SADLLVTQHGEGYFLAAD 228 L + + RTVDV + ++R KL +A ++ T G GY AAD Sbjct: 186 LAAVWGYAAHS-STRTVDVHVAQVRAKLGGAAGVIRTHRGVGY--AAD 230 >UniRef50_B8JG70 Two component transcriptional regulator, winged helix family n=2 Tax=Cystobacterineae RepID=B8JG70_ANAD2 Length = 238 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 120/229 (52%), Gaps = 12/229 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGA-GLREIMQNQSVDLILLDINLPDENGLM 63 ++ VED+ A Y G+ V+ A G GL E ++ Q D+++LD+ LP ++GL Sbjct: 11 VLFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQH-DVVILDLMLPRKSGLE 69 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LR R V II++T + DR++GLE GADDY+ KP REL+ R++ L+ R Sbjct: 70 VCRELRARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRR---- 125 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + R L+ + R G P++LT AE+ +L G +L+RE+LL Sbjct: 126 GRGSLGPPREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTREQLL 185 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + E D R++D I RLRHKL D LL T G GY LAA Sbjct: 186 DLTKGSADEAFD-RSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVLAA 233 >UniRef50_Q1GLX1 Two component transcriptional regulator, winged helix family n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GLX1_SILST Length = 238 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++ +DE + L Y + GY V + + + + + D+++LDIN+P +GL Sbjct: 10 ILVCDDEHHLREMLSEYLCERGYEVMEAENADAMLAVFNDDTPDVVVLDINMPGTDGLTA 69 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R LR ST+ +I+++ + +DRIVGLEMGADDY+ KP++LREL R+K L R A Sbjct: 70 LRTLRVNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQGFAG 129 Query: 125 Q--AQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + AQ F L++ L GE I +T E+ +L F N G +L+R++ Sbjct: 130 EESAQRDRMTGTVPFGMCRLDLDGAKLFGESGEEIAITSMEFSLLRVFAQNRGRVLNRDQ 189 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFL 225 LL R E+ D R++D+ I RLR K+ + + T G GY Sbjct: 190 LLEQAHDRGWEHFD-RSIDLRISRLRRKIEQNPTKPETIRTVRGIGYIF 237 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H +++VED+ + L + GYTV+ + G ++ DLI+LD+ LPD +G Sbjct: 11 HTVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGF 70 Query: 63 MLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 LTR LR + ++ +T R+ DRI GL G DDYVTKP ++E+++RV+ +L R Sbjct: 71 RLTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAG 130 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 P R+AG L+ S H + G P++L+ E+ +L F+ +P +L + Sbjct: 131 APASTAP--VRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAE 188 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFL 225 +L+ + R + D R VD ++ LR KL + LL T G GY L Sbjct: 189 ILQRVW-RYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCL 235 >UniRef50_D2B5L0 Response regulator receiver protein n=15 Tax=Actinomycetales RepID=D2B5L0_STRRD Length = 238 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 6/227 (2%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++VED+ V + + + GY VSV G E+ ++ DL+LLD+ LP +G+ Sbjct: 11 SLLLVEDDEVIRRTVAMTLERYGYEVSVAGDGLTGLELFRDGRHDLLLLDVMLPALDGIG 70 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR---- 119 L R +RE S V I++++ R D D + GLE GADDYV KP++ LV R+++LL R Sbjct: 71 LCRRVRESSVVPILMMSARGDSPDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRAAFA 130 Query: 120 -IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + F ++ + R GEP+ L E +L+ F NPG +L Sbjct: 131 PPAPPAEQPSEPAGASLVFGDLSIDPQGLEVRRAGEPVALAPTELRLLLEFAANPGIVLD 190 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFL 225 R+ LLR + + D R VD+ ++RLR K+ AD + T G GY L Sbjct: 191 RQTLLRDVWDYGWDG-DSRVVDLCVQRLRKKIGADRIETVRGFGYKL 236 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 13/232 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-QSVDLILLDINLPDENGLM 63 ++IVED+P + ++ ++EG G E++ + + DL+LLD+ LP +G+ Sbjct: 4 VLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGIS 63 Query: 64 LTRALRE----RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 + R LRE TV ++++T R D +VGLE+GADDY+TKP R+L RV+ L R Sbjct: 64 VCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLRR 123 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + QA P + F G +++ R + GE ++LT E+E+L +NPG + SR Sbjct: 124 QRMNAQASP--EQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSR 181 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 E+++ L + R+ DV I+ LR K+ D + T G GY A Sbjct: 182 EQIMDHLWGGEFFG-EPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFA 232 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 11/224 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+IVEDEP L +Y G+ G ++ ++ DL+LLDI LP ++G+ + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + LR S + II++T R + IDR++GLE+GADDY+ KP RE+V RVK +L R + Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSN--- 123 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 P + L+ + G +KLT +E+ +L ++ P + SR LL Sbjct: 124 --TPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLD 181 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGY 223 + + E D RT+D IR LR K+ L + + +G GY Sbjct: 182 LAIGSQFEGYD-RTIDSHIRNLRKKIKKALPDLECIHSIYGAGY 224 >UniRef50_Q46SD2 Sensor protein n=11 Tax=Bacteria RepID=Q46SD2_RALEJ Length = 396 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 2/157 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP H++IV+D+ T+ L+ Y ++GY + A G LR + DLI+LD+ L ++ Sbjct: 1 MPGHVLIVDDDAETRRLLREYLQKQGYRATAVADGRALRAALGTARPDLIVLDLMLAGKD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL L R LR RS + II++T R + DR+VGLEMGADDYV KP REL+ R+K++L R Sbjct: 61 GLELCRDLRTRSNLPIIMLTARDEETDRVVGLEMGADDYVVKPFNPRELLARIKSVLRRA 120 Query: 121 -DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPI 156 L +P ++F+G+ L+ + L D P+ Sbjct: 121 RSLPDNLEPEAA-AWFKFSGWVLDAATRNLTSDRAPM 156 >UniRef50_B1QVC8 DNA-binding response regulator n=9 Tax=Bacteria RepID=B1QVC8_CLOBU Length = 223 Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+I+EDE + + L+S+ ++ Y V + + E + N++ DLILLDINLP +G Sbjct: 3 KIMIIEDEVIIREELKSFLSKYNYEVVAPSDFENVIEFILNENPDLILLDINLPIFDGYY 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R +R+ S + II+VT R +D ++ + +GADD+V+KP + L+ R+ LL R + Sbjct: 63 ICREIRKTSDIPIIIVTSRDSDMDELMSMNLGADDFVSKPYNTQILLARIAALLKRSGGS 122 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + N ++ +N+S T+ R+ + I+LT+ E ++L + N G I+SRE L+ Sbjct: 123 SNTSKYLIYNNFK-----INLSNATISREDKEIELTKNEIKILSCLIENKGSIVSREILM 177 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSA----DLLVTQHGEGYFLA 226 L D T+ V I RLR KL D + T+ G GY + Sbjct: 178 EYLWKSDYFVDD-STLTVNITRLRRKLEGIGIKDAIETRRGLGYIMV 223 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 129/229 (56%), Gaps = 15/229 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEG-YTVSVTASG-AGLREIMQNQSVDLILLDINLPD 58 M IVI+ED+ ++ QEG + V++T +G AGLR ++++ +LILLDINLP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPP-NLILLDINLPL 59 Query: 59 ENGLMLTRALR-ERST--VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKN 115 NG + R LR E +T V II++T R+D D+I GL +GADDY+TKP +REL+ R+ Sbjct: 60 MNGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINA 119 Query: 116 LLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 +L R + T + Y ++ + + G+ I LTR E+ +L + G Sbjct: 120 VLRRTE-------GTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGR 172 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLV-TQHGEGY 223 +L+RE LL + + + RT+DV IRR+R KL D + T G GY Sbjct: 173 VLTREYLLDRVWGIDYDG-ETRTLDVHIRRVRQKLGIDGYIETAVGIGY 220 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 9/230 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDE 59 M I+++ED+ Q + + + EGY V G G+++ Q S DL++LDI +P+ Sbjct: 1 MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQG-SYDLVILDIMMPNL 59 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + + +R+ S+V II +T +D D++ G ++ DDY+TKP L+ RV+ +L Sbjct: 60 DGYGVCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAIL-- 117 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 R++ D F L+++ + E DGEPI+LT E+ +L A + ++++R Sbjct: 118 ----RRSNKTINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITR 173 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADV 229 E LL + D R VD I+ +R K+S + T G GY L D+ Sbjct: 174 EGLLDSIWGYDYYG-DTRIVDAHIKNIRKKISLPYIKTVKGIGYTLEKDI 222 >UniRef50_A0NNN8 DNA-binding response regulator n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNN8_9RHOB Length = 240 Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 12/231 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 + IV+DEP L Q V A+ A + + ++ D ++D+ LPD G+ L Sbjct: 13 VFIVDDEPEIGNLLLDALLQFEMEGKVFATAAQMLTALSLETPDACIVDLGLPDMEGMAL 72 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR-IDLA 123 +R RS+V II+++ R DR++GLE+GADDYV KP + RE+V R++++L R DL Sbjct: 73 INEIRRRSSVPIIVLSARGHSTDRVMGLELGADDYVVKPFDPREVVARIRSILRRSSDLP 132 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLER-DGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + +C RF G+ + H L +GE L+ E +L A + P +LSR+ L Sbjct: 133 SK---KASVDCARFEGWSYQPASHCLTSPEGEETFLSTGEATLLEALLRAPKRVLSRDYL 189 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLS----ADLLVTQHGEGYFLAADV 229 L R E+ D R++DV I R+R KL+ + T +G GY LA DV Sbjct: 190 LE--HGGRDESLD-RSIDVRISRIRKKLNRKNEPAHIRTIYGSGYMLACDV 237 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 8/226 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+DE + L+ Y +E Y + +G + DLILLD+ +P +G+ + Sbjct: 9 ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIEV 68 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R +RE+ II++T + + +R+ G E G DDY+ KP RE+V+RVK LL R Sbjct: 69 CRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQTS 128 Query: 125 QAQPHT-QDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 +T N F+ ++ H + DG + LT EYE+L P ++ RE+LL Sbjct: 129 YFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREKLL 188 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKL------SADLLVTQHGEGY 223 + + DLRTVD ++RLR KL +A +VT G GY Sbjct: 189 KEVWQYEFFG-DLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGY 233 >UniRef50_D0XTW3 Two component transcriptional regulator, winged helix family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XTW3_9CAUL Length = 242 Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 13/239 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++++ + +A++ ++ Y V +SG + I+ +VD ++LDI LP E Sbjct: 1 MQQRILLLDADVEARAQMCDLLSRHEYEVVTASSGQQMDRILTTTAVDAVVLDIMLPGEG 60 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G + LR ++ + G+I+V+ ++ D +VGLE+GADDYV KP REL+ R++ +L R Sbjct: 61 GFSVCNRLRSQNHSPGVIVVSAMAEESDVVVGLEIGADDYVAKPYRSRELLARIRAVLRR 120 Query: 120 IDLARQAQP-HTQDNCYRFAGYCLN-VSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 A + P + N YRF G+ LN V+R + ++L+ E+ +L + +P +I+ Sbjct: 121 RQAAMRPNPDEDRANVYRFDGWRLNVVTRQLFDPYSRAVELSSGEFNLLKTLLASPQQIV 180 Query: 178 SRERLLR--MLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAADV 229 R RL + RR +P ++V++ RLR KL+ DL+ T G+GY L V Sbjct: 181 PRARLAQDPRTGERRDGSPQ---INVIVSRLRAKLARVQGGGDLIRTVRGQGYLLTVAV 236 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 9/228 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDENG 61 H++++VED+P + L S GY+VS +G + E + Q DLI+LD+ LPD +G Sbjct: 13 HNVLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQP-DLIVLDVGLPDIDG 71 Query: 62 LMLTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 +TR LR E ++ +T R+D DRI+GL G DDYVTKP ++E+++R++ +L R Sbjct: 72 FAVTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRS 131 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D+ T+ R+ L+ H + R G PI+L+ E+ +LV + P ++ ++ Sbjct: 132 DMPPSGG--TRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKK 189 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS---ADLLVTQHGEGYFL 225 +L + D R VD +R LR K+ L+ T G GY L Sbjct: 190 EILSEVWHYDFAG-DARIVDTYVRNLRRKIDRFEPQLIQTVRGVGYCL 236 >UniRef50_B0SB02 Sensor protein of a two-component response regulator n=7 Tax=Bacteria RepID=B0SB02_LEPBA Length = 225 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 129/232 (55%), Gaps = 15/232 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDENGL 62 I+++EDEP Q +Q EG+++S+ +G GL+ M + LILLDI LPD++G Sbjct: 3 KILLIEDEPGIQETIQIALEAEGFSLSIAPTGIQGLQ--MLADDISLILLDIGLPDQSGF 60 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + +++R+ +++ +I +T RS ID+++GLE+GADDY+ KP REL+ R++ +L R Sbjct: 61 EVLKSIRKAASIPVIFLTARSSEIDKVLGLEIGADDYIVKPFSPRELLARIRAILRRTQN 120 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + +++ + + +G+ + L+ EY+ + F PG I +RE + Sbjct: 121 PLVLEQKSNQKLR------ISLDKKLVYYNGKNLNLSPYEYKTMELFFKWPGRIFTREEI 174 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 + + ++ D R VD +I+ +R + + D + T+ G+GY L + Sbjct: 175 MDSVWTEPEDSFD-RAVDTVIKNIRARFKEMDPNFDPIETRRGQGYGLKETI 225 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 123/235 (52%), Gaps = 12/235 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+DEP L Q GY V GA + QS ILLD+ LP +G+ + Sbjct: 6 ILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGMEV 65 Query: 65 TRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID-- 121 T+ LR E+ II+VT ++D D++ GLE+GADDY+TKP RE++ R+K ++ R Sbjct: 66 TKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTPD 125 Query: 122 --LARQAQPHTQDNCYRFAG-YCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + A + G ++ +++ + R+G+ I LT E+E+LV FV G +LS Sbjct: 126 EPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVLS 185 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 R+ +L + + + R VD+ I LR K+ AD L+ T G GY D Sbjct: 186 RDAILNHVWGYDYAS-ETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGD 239 >UniRef50_Q1YN14 Putative transcriptional regulator n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YN14_MOBAS Length = 251 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 126/241 (52%), Gaps = 13/241 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I I+ED+ A T++G+ V+ A R + DL ++D+ LPD + Sbjct: 8 MHERIFILEDDRDLAAVFARELTEQGFVVATFQRIAEFRRQLGAAPPDLCIVDLGLPDGD 67 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL L + R + I++V+GR DR+ GLE GADDY+TKP+E EL R++++L R Sbjct: 68 GLALLKDDLGRHGLPIVIVSGRGALDDRLQGLESGADDYLTKPVEPLELAARIRSVLRRT 127 Query: 121 DLARQAQP------HTQDNCYRFAGYCLNVSRHTLERDGEPIK-LTRAEYEMLVAFVTNP 173 R+A P + + FAG+ + TL G + L+R++ E+L AF+ Sbjct: 128 SRNREATPTPRVSATARTDIAEFAGWRADFGSLTLRAPGGAEQPLSRSDAELLRAFLEAQ 187 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 G +LSR+ LL + SA E D R+VDV + RLR KL D + T +G GY A Sbjct: 188 GRVLSRDFLLELFSASGEEAFD-RSVDVRVSRLRKKLDEDPKKPVHVRTVYGAGYVFATR 246 Query: 229 V 229 V Sbjct: 247 V 247 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 16/233 (6%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++V+D+ L +Y +EGY+V G + + D++LLD+ LP +G + Sbjct: 3 VLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWGV 62 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + +R S V II++T R D DRI+GLE+GADDYV KP +E++ R++ + R Sbjct: 63 CKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIF------R 116 Query: 125 QAQPHTQ----DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + QP ++ + + L+ + +L G P++LT EY++L F+ +PG++ SR Sbjct: 117 RLQPASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRL 176 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +L+ + E + RTVD I+ LR KL A + T +G GY L + Sbjct: 177 QLIEKVQDYAFEGYE-RTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGE 228 >UniRef50_D1U362 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U362_9DELT Length = 236 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQSVDLILLDINLPDENG 61 + +++++D+P L Y EG+ + T +G +GL + N+ LI+LD+ LPD +G Sbjct: 2 NKVLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEYC-LIILDVMLPDTSG 60 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + LR S V +I++TGR + IDR+VGLEMGADDYV+KP LREL+ R++ +L R+ Sbjct: 61 FNVLSRLRGDSAVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVLRRVG 120 Query: 122 LAR----QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R QP + +N + P+ LT E+ ++ N G I+ Sbjct: 121 PERGDGDPQQPPRPQGDIKVGEILINRGAQQVTLSDAPVHLTSTEFGLIEQLALNLGNIV 180 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLV-TQHGEGYFLA 226 RE L+ R + D ++V + LR KL + T G GY LA Sbjct: 181 QREDLMEKALGRDTDFDDY-VLNVHMSNLRRKLGGHASIKTIRGRGYLLA 229 >UniRef50_B5EQN9 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B5EQN9_ACIF5 Length = 243 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 118/232 (50%), Gaps = 18/232 (7%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++VEDE Q L+ + G+ V S ++Q L++LD LP +NGL Sbjct: 10 VLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKNGLAW 69 Query: 65 TRALRERS---TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 R LR R + IIL+T R + DR+ GLE GADDY+ KP RELV RV LL Sbjct: 70 CRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALL---- 125 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R++ T R G +++ H + D + L E+ +L FVTNP + SR+ Sbjct: 126 --RRSYGGTAAGRVRLGGLQVDLRAHRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDM 183 Query: 182 LLRMLSARR--VENPDLRTVDVLIRRLR----HKLSADLLVTQHGEGYFLAA 227 LL + R+ VE RTVDV IRRLR H A ++ T GEGY +A Sbjct: 184 LLDQIWGRQSFVEE---RTVDVHIRRLRRGLEHHGYAQIIETVRGEGYRCSA 232 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 8/221 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+IV+DE + L+ Y +EGY VS G ++ + DL++LD+ LP ++G + Sbjct: 9 ILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWSI 68 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R +++ + +I++T R D D + G EMGADDY+TKP + L+ RVK+LL Sbjct: 69 LREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLL------- 121 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 + + ++ +N + H++ I+L EY++LV + N LSRE+LL Sbjct: 122 RKTNNMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLN 181 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFL 225 + D RT+D I+ LR K+ + + T G GY L Sbjct: 182 EVWGYDFLGDD-RTIDTHIKNLRKKIGKNAIKTIRGIGYKL 221 >UniRef50_A6G4N0 DNA-binding response regulator n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G4N0_9DELT Length = 223 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++++D+ L Y Q G + GA ++ N+S D++LLD +P + Sbjct: 1 MAIRALLIDDDARLFELLSGYLGQNGVELEHAVDGAAGLRVLANESHDVVLLDGMMPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R LR RS + ++++T R D DR+VGLE+GADDY+ KP REL+ R++ +L R+ Sbjct: 61 GLEVLRRLRARSAIPVLMLTARGDEADRVVGLELGADDYIAKPFSSRELLARLRAVLRRM 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 P G + + +GE LT E+++LVA + G +++R Sbjct: 121 ------HPEVGRERLSANGVVALIGTREVRVEGEAASLTGLEFDLLVALLRRAGRVVTRA 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLA 226 LL + R RTVDV I +LR KL D + T G GY Sbjct: 175 ALLHE-AGRDDTVVSERTVDVHISKLRKKLGGDKIKTVRGVGYVFG 219 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 13/227 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++VED+ + + + E Y+V G EI +N S D+ILLD+ LP +G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + +R S V +I+ T + D+++GL +GADDY+TKP + EL+ R+K + R + Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 ++ ++QD ++ +N+S++ + + G + LT E+E++ TN G S+E+L Sbjct: 123 SSR-NSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLYN 181 Query: 185 MLSARRVENPDLRTVDVL---IRRLRHKLS-----ADLLVTQHGEGY 223 + + P +VL I RLR+KLS + + T G GY Sbjct: 182 AI----WKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGY 224 >UniRef50_D0RRP4 Protein PetR n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRP4_9RICK Length = 226 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 15/231 (6%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 HI+I++DE + L+ Y E + VS + +Q DL+++DI +P ++GL Sbjct: 6 KHILIIDDEEGIREPLKEYLESENFFVSTAKDAEDAKNKIQLLEFDLLIVDIMMPGQSGL 65 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 LT+ +R+ II +T + RI GLE GADDYV KP E +ELV+R+KN+L R+ Sbjct: 66 ELTKEIRKDKDTPIIFLTAMGESASRIHGLETGADDYVPKPFEPKELVLRIKNILKRVKS 125 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ + +F +++ + T+ K+ ++E +L + + G++ RE + Sbjct: 126 LKEGT-----HLIKFGERKVDLKKMTITFKKNVEKINQSEKLLLEKMIMSLGKVFQREDI 180 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 ++++ + R VDV+I RLR K+ D L T G GY L AD Sbjct: 181 SKIINLNKE-----RAVDVVITRLRQKIETDPKNPIYLQTVRGNGYVLWAD 226 >UniRef50_C0D718 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D718_9CLOT Length = 216 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 14/223 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 ++I ED+P Q L Y +EGY V GA + + + VDL++LD +P +NGL Sbjct: 2 KVLIAEDDPDMQKILGLYLRREGYQVDAVGDGAAAVDFLAERQVDLVVLDWMMPVQNGLD 61 Query: 64 LTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R +R + V I+++T + D I GL GADDY+ KP +++ L++RVK L Sbjct: 62 TCREIRRLNIPVKILMLTAKGQNEDEIAGLSCGADDYLRKPFDMQVLLLRVKKLC----- 116 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + R LN +G ++LTR E+ +L F++N +LSRERL Sbjct: 117 -------NAEGVLRCGKLTLNPGTGEAALEGRRLELTRTEFGLLSCFMSNQRMVLSRERL 169 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFL 225 L + D RTVD IRRLR K+ + T+ G GY + Sbjct: 170 LDRVWGMDFTG-DARTVDAHIRRLRGKIGGGYIKTRIGMGYVM 211 >UniRef50_C9XPS7 Putative uncharacterized protein n=3 Tax=Clostridium difficile RepID=C9XPS7_CLODC Length = 204 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 112/208 (53%), Gaps = 13/208 (6%) Query: 21 YFTQEGY-TVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILV 79 +F GY T ++ + + +++Q + DLILLDINLP+ +G L R +R ST+ II + Sbjct: 3 FFENNGYSTQTLDTNNCDVLQVIQESTPDLILLDINLPNIDGFSLCRQIRNCSTIPIIFI 62 Query: 80 TGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAG 139 T R ID + GL MG DDY+TKP L L+ RVKNLL R+D + + + ++ Sbjct: 63 TARDSAIDELNGLTMGGDDYITKPYNLPLLLARVKNLLKRVDSSDKQK-------IKYRE 115 Query: 140 YCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTV 199 LN+ T+E I+L+R E +++ N G I+ R L+ L + D + Sbjct: 116 IILNLISATVEYQNAVIELSRTELKIMYYLFQNVGSIVPRIDLVEYLWDNHIHIDD-NAL 174 Query: 200 DVLIRRLRHKLSA----DLLVTQHGEGY 223 V I RLR KL DL++T+ G GY Sbjct: 175 SVNITRLREKLRGIGITDLIITKRGMGY 202 >UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostridiales RepID=C9XSJ2_CLODC Length = 228 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 15/231 (6%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVS-VTASGAGLREIMQNQSVDLILLDINLPDENG 61 I +VED+ L EG+ V+ V+ L EI +N+ DL L+DI+LPD NG Sbjct: 2 KRIFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNK-FDLALIDISLPDGNG 60 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + ++E+ + +I +T D + GL MGADDY+TKP REL+ R++ L Sbjct: 61 FTICTEIKEKQDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTAL---- 116 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R++ + + G ++ + ++++G + L+ EY +L+ F++NP I++R R Sbjct: 117 --RKSGRF--GSTFEICGLYVDTATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVR 172 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 LL L E + T+ V I+RLR K+ D +++T G GY L Sbjct: 173 LLDELWDAAGEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRLGG 223 >UniRef50_B3PFT8 AbfR arabinofuranosidase two component system response regulator n=26 Tax=Proteobacteria RepID=B3PFT8_CELJU Length = 232 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 12/228 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++++D+ L Y + EG+ V + G E+ + + LI+LD+ LP +G + Sbjct: 4 ILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSGFDV 63 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + LR+ S +I++T + D +DR++GLE+GADDY+ KP + RELV R++ +L R +A Sbjct: 64 LKILRQHSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRASIAE 123 Query: 125 QAQPHTQDNCYRFAG--YCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 QP N R L++ T D + + LT E+ +L V G+++S++ + Sbjct: 124 ANQP----NVERLTSGKLSLHLGTRTATWDNQDVVLTGTEFSVLEILVRRAGQVISKDDM 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFL 225 R++ P R++DV + +R K+ + DL++ G GY L Sbjct: 180 TEQALNRKL-TPYDRSIDVHVSNIRKKIALAGSTKDLIINVRGAGYML 226 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 123/208 (59%), Gaps = 9/208 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H+++VEDE ++ Y G+ VS+ G E + +L++LD+ +P +GL Sbjct: 3 HVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDGLT 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R +RE+S + II+VT R++ IDR++GL MGADDYV KP +ELV RV+ +L R+D Sbjct: 63 ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLD-- 120 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 R+A+P Q++ +R ++ ++ + + + LT E+ +L F+ + G++ SR +LL Sbjct: 121 RKAEPE-QNDLFR-----IDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQLL 174 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLS 211 ++ + D R +D I+ LR K+S Sbjct: 175 DHINPDSFDVAD-RVIDSHIKNLRRKIS 201 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 12/226 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++IVEDE L+ Y +EGY VS+ G + ++ Q++ +ILLDI LP +G Sbjct: 4 EQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRLDGK 63 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R+ S V II++T + + +DRI+G E+G DDY+ KP RE+V RV +L Sbjct: 64 TVCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVL----- 118 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R+ + D+ LN + E +G + LT +E+++ + +P + +R +L Sbjct: 119 -RRTFKKSSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQL 177 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGY 223 + + + + RT+D I+ LR K+ ++ + +G GY Sbjct: 178 IEKVQGYNYDGYE-RTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGY 222 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 119/232 (51%), Gaps = 7/232 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+D+ + LQ + +G+ V + ++Q + LI+LD LP E+GL Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 63 MLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR+ + II++T R DRI GLE GADDY+ KP EL+ R++ +L R Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQV 140 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 P Q F + L++S TL R+G+ + LT E+ +L A V +P E L+R++ Sbjct: 141 REVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDK 200 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAAD 228 L+ + R + R++DV + RLR + A + T G GY D Sbjct: 201 LMNLARGREWGAME-RSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPD 251 >UniRef50_O32192 Transcriptional regulatory protein cssR n=10 Tax=Bacillales RepID=CSSR_BACSU Length = 225 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 7/225 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + I +VEDE L Y EG+ ++ G R+ M S L +LDI LPD + Sbjct: 1 MSYTIYLVEDEDNLNELLTKYLENEGWNITSFTKGEDARKKM-TPSPHLWILDIMLPDTD 59 Query: 61 GLMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G L + ++ + V +I ++ R IDR++GLE+G++DY++KP REL++RV+ LL Sbjct: 60 GYTLIKEIKAKDPDVPVIFISARDADIDRVLGLELGSNDYISKPFLPRELIIRVQKLL-- 117 Query: 120 IDLARQAQPHTQDNCYRFAGY-CLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 L + P Q N + Y +R + +G I LT E+++L+ F+ + G S Sbjct: 118 -QLVYKEAPPVQKNEIAVSSYRVAEDAREVYDENGNIINLTSKEFDLLLLFIHHKGHPYS 176 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGY 223 RE +L + D R VD L+RRLR K+ + T +G GY Sbjct: 177 REDILLKVWGHDYFGTD-RVVDDLVRRLRRKMPELKVETIYGFGY 220 >UniRef50_B8IIA5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IIA5_METNO Length = 235 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 11/226 (4%) Query: 7 IVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTR 66 +++DE A L Y GY V S A ++ +VDL++LD+++P GL L R Sbjct: 1 MIDDEVDLTAALAEYLGDAGYDVVTATSVATGGAVLAEAAVDLVVLDLSMPGGGGLDLLR 60 Query: 67 ALRERS--TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL-A 123 LR + +V ++++T ++ I+R+VGLE+GADD++ KP+E REL R+ +L R+ + Sbjct: 61 TLRTGAAKSVPVLILTALAEPIERVVGLELGADDFLVKPVEPRELAARISGILCRLGMET 120 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 R+ P + A L SR L P +L E ++ F NP +++RE LL Sbjct: 121 RETVP------FERATVDLTTSR-LLRHGAPPERLGPGEVVLIRIFARNPNRVMAREDLL 173 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADV 229 A ++ D R++D I RLR KL D +VT G GY V Sbjct: 174 EAAPANSLDAND-RSIDTRITRLRRKLDTDAIVTVRGHGYMFVPPV 218 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 12/229 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP I+ V+D+P LQ +EG+ V +SG + + S DL++LD+ +P + Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + L+ + V II+++ R++ +DR+VG MG DDY TKP EL +RVK +L R+ Sbjct: 61 GFETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRL 120 Query: 121 DLARQAQPHTQ-DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 +P +N ++ L+ ++ T+ + ++LT ++E+L +NP + ++ Sbjct: 121 -----GEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTK 175 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 LL + D TV V IRRLR K+ D + T G GY Sbjct: 176 AHLLDKIWDSSFYGDD-NTVTVHIRRLREKVETDPSNPEYIKTVWGMGY 223 >UniRef50_Q2S3D0 Alkaline phosphatase synthesis transcriptional regulatory proteinphoP n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3D0_SALRD Length = 253 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 13/233 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGA-GLREIMQNQSVDLILLDINLPDENGLM 63 ++I ED+P + L+S+F Q GY V G L+E+ DL+LLD+ LP ++G Sbjct: 15 LLIAEDDPDLGSSLESFFAQHGYEVHHATEGEDALQEMTTLPPYDLVLLDVRLPQKDGFE 74 Query: 64 LTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R R+ +I++T + + ++ G ++GADDYVTKP + +EL RV+ +L R Sbjct: 75 VLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKELAARVEAVLSR--- 131 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ A P T D + F ++ T+ RD EP+ LT E+++L F+ + G +SRE+L Sbjct: 132 SQSALPDTGD-VFAFGNVSVHFPDETVTRDSEPVGLTDLEFDILTYFIEHRGRTVSREQL 190 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY-FLAADV 229 LR + + RT+D + LR K+ L T +G GY F+ DV Sbjct: 191 LRDVWGISGDI-TTRTIDRHVASLRKKIEPTPDEPAYLQTVYGIGYKFVTDDV 242 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 9/227 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P I++V+DE + + GY V +G + +++ DL +LDI +P NG Sbjct: 5 PSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNG 64 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L R LR R+ ++ ++ R +D++VGLE+GADDY+ KP +REL+ RV+ LL R Sbjct: 65 YELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQ 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + A+P ++ G L+ +RH E I LT E+E+L A + G++ SRE Sbjct: 125 M--DAEPMAGESI-TAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASRED 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGY 223 LLR + +TVD I+RLR KL+A ++ T G GY Sbjct: 182 LLREAWGWEYIT-ETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGY 227 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IV+DE + L++ + GY V + G + + D+++LDI +P +G + Sbjct: 17 VLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYGV 76 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + +R+ S V II++T D DRI GLE+GADDYV KP +EL R++ +L R + A Sbjct: 77 CQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKAA 136 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 + T F +++++ + +D E I+LT E+ +L ++ G+ SR +L+ Sbjct: 137 FSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADILQ 196 Query: 185 MLSARRVE-NPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFL 225 + E + D R VDV I RLR KL + DL++T G GY Sbjct: 197 EVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_A9KX94 Two component transcriptional regulator, winged helix family n=7 Tax=Gammaproteobacteria RepID=A9KX94_SHEB9 Length = 235 Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 123/234 (52%), Gaps = 9/234 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGA-GLREIMQNQSVDLILLDINLPDE 59 M I+IVED+ +Q Y EGY V + ++G + I++ Q L++LDI LP + Sbjct: 1 MKTKILIVEDDLPLAESIQEYLNYEGYQVEIISNGVLAVSRILEWQPA-LVILDIMLPQK 59 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +GL + R +R + I++ T R + ID+IVGLE+GADDY+ KP++ R L+ ++K L R Sbjct: 60 DGLSVCREVRPQYNGYILMFTARGEEIDQIVGLEIGADDYLLKPVKPRMLLAKIKAFLRR 119 Query: 120 IDLARQAQPHTQDNCY-RFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 LA + Q + Y F +N + ++ IKLT EY++L+ N G ILS Sbjct: 120 DRLAESIAENQQVSEYISFGQLAINTQKRSVTLADVAIKLTDGEYDLLITLAKNAGNILS 179 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAA 227 R ++ + + + R VD I +LR KL D + T +GY + Sbjct: 180 RNDIVEQVKGYYYDGIE-RGVDNHICQLRKKLGDDARNPFKIKTIRSKGYLFVS 232 >UniRef50_A3Y9U3 Response regulator protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9U3_9GAMM Length = 243 Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 17/243 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQ-EGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M I++++D+ L+ Y + + VS G ++++ + I+LD+ LP+E Sbjct: 1 MDVKILLIDDDESLADLLKQYLARYDMQLVSANCPSLGY-QLLEKEQPQAIILDVMLPEE 59 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + + +R +S + II++T R D +DR++GLE+GADDY+ KP E RELV R++ +L R Sbjct: 60 DGFEVCKHVRRKSDIPIIMLTARGDVMDRVIGLEIGADDYLGKPFEPRELVARLQTILRR 119 Query: 120 IDLARQAQPHTQ----DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 ++ Q + T ++ F G +N R ++ + + LT EY +L+ +P Sbjct: 120 LEKQSQKENQTDASSAEHILTFKGMGINTERQQVKLFDQRLDLTTTEYRLLLLMAKSPQT 179 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLR----------HKLSADLLVTQHGEGYFL 225 + SR+ +L L +E R+VD+ I RLR H +S D + T G GY Sbjct: 180 VFSRDDILNHLKGVEIELFS-RSVDIAISRLRQKFKAATPDDHHVSVDFIKTVWGAGYCF 238 Query: 226 AAD 228 + Sbjct: 239 VGE 241 >UniRef50_D1AFR9 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=D1AFR9_SEBTE Length = 221 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 118/227 (51%), Gaps = 13/227 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+IVEDE L+ +E + + G+ ++ + DL+LLDINLP ++ Sbjct: 1 MKKKILIVEDEVNLMEVLEDTLLEENFEIFKAYEGSAAIDMFYEVNPDLVLLDINLPKKD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R S II++T R +D + GL +GADDY+TKP L+ L +R+K LL +I Sbjct: 61 GWTICKEIRNDSNKPIIIMTARDTELDELKGLSIGADDYITKPFSLKILTLRIKKLL-KI 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + ++ Y + N + L D + I++T+ E L + N G++L+R+ Sbjct: 120 E---------NEDYYLYETLRFNFGTYELIIDSQNIEITKKESLFLDYIIKNKGKLLTRD 170 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS--ADLLVTQHGEGYFL 225 LL + + D R VD LI+R R KLS DL+ T G GY Sbjct: 171 MLLNEVWGYDFDG-DNRVVDTLIKRTRKKLSPYGDLIKTVRGMGYMF 216 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 127/231 (54%), Gaps = 15/231 (6%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGA-GLREIMQNQSVDLILLDINLPDENGLM 63 ++IVED + ++ Y + GY V V ++G GL E ++ DL+LLD+ +P +GL Sbjct: 25 VLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRP-DLVLLDVMMPGMDGLE 83 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R R V +I +T R +D+++GLE+GADDYVTKP + EL+ RV R +L Sbjct: 84 FLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARV-----RANLR 138 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 R ++P + R L+ + T GE + LTR+E+E++ AF+ PG + +R LL Sbjct: 139 RSSEP-LPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELL 197 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L + + RT+DV +R LR K+ A+ L+ T G GY L D+ Sbjct: 198 EQLQEEALGSE--RTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPDL 246 >UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=6 Tax=Lactococcus lactis RepID=Q030C5_LACLS Length = 234 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 13/231 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQS-VDLILLDINLPD 58 M I+I+EDE L++ + EGY V A G +GL+ + Q +D++LLD +P Sbjct: 13 MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72 Query: 59 ENGLMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 +GL + R +++ + V +I VT R D++ GL+ GADDY+TKP + EL+ R++ + Sbjct: 73 LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 + +TQ Y + LN HT+E + LT+ E+ +L+ + GEI+ Sbjct: 133 ---------RKNTQPAIYSYGTVSLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEII 183 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAAD 228 SR+ +L + L TVD +R LR KL +++ T G GY L D Sbjct: 184 SRDDILEEVWGMNF-GGQLNTVDTYVRYLRKKLDKNMIETIRGLGYRLNKD 233 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 16/233 (6%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+IV+DEP + ++ + GY G+ ++ DL++LD+ +P +G+ Sbjct: 75 ILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMTC 134 Query: 65 TRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R +R R +I++T R + D++ GLE GADDYV KP RELV RVK +L R Sbjct: 135 LREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT--- 191 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + D F ++ + HT+ GE + LT E+++LV +N G LSRE++L Sbjct: 192 -MPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKIL 250 Query: 184 RMLSARRVENPDL----RTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAADVC 230 ++V N D RTVD ++ LR L + T G GY D Sbjct: 251 -----QKVWNYDYFGEDRTVDTHVKMLRGHLGKCRGYIATVWGIGYKFDPDAA 298 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 115/212 (54%), Gaps = 3/212 (1%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+IV+D+ + Y T GY V+ G EI+Q+ ++LD+ +P +G Sbjct: 12 QILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFE 71 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL--WRID 121 + + LR++S + ++++T + DRIVGLEMGADDY+ K REL+ R++ + R+ Sbjct: 72 MLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRLS 131 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + R + +DN +++ T G+P+ LT EY++L+ P +LSR++ Sbjct: 132 MDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRDQ 191 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD 213 LL ++ R + D R+VDV I LR KL D Sbjct: 192 LLDAVAGRSYDVFD-RSVDVHISSLRRKLGED 222 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 11/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +IVED+ + L+ F EG+ V + G + + S D+I+LD+ +P + Sbjct: 1 MSLKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKID 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + + LR +S + II++T +S D++ GLE GADDY+TKP +EL++RVK +L R Sbjct: 61 GVKVCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRY 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + ++ + +D +++ + G+ I LT E+E+L NP + + RE Sbjct: 121 NKVQEEKIVLKD-------LTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRRE 173 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS---ADLLVTQHGEGYFLAAD 228 LL + + D VDV I+ +R+KL L++T G GY L+ + Sbjct: 174 VLLNKVWG-IASDYDSNIVDVYIKNIRNKLEDKPPKLILTIRGRGYMLSTE 223 >UniRef50_A7HMZ4 Two component transcriptional regulator, winged helix family n=7 Tax=Thermotogaceae RepID=A7HMZ4_FERNB Length = 229 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 114/220 (51%), Gaps = 10/220 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IVEDE + LQ +G+ V + ++ + ++ILLD+ LPD N + Sbjct: 3 VLIVEDERIIAENLQKLLKSDGFESDVANGINDMYRKLEKNTYEVILLDLMLPDGNAINE 62 Query: 65 TRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + L+ E +GII+++ +S ID+I+G+E+GADDYV KP RE+V RVK L R Sbjct: 63 IQTLKNEFPDIGIIVISAKSTDIDKILGIELGADDYVGKPFNPREVVARVKAYLRRTKGI 122 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 ++ R+ + S + + DG+ I LT E+E+L P + SRE +L Sbjct: 123 KE--------VIRYGKLEIYPSDYVVLYDGQKIDLTAKEFEILKLLAQRPDRVYSREEIL 174 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGY 223 + + D R VDV I LR KL D ++T G GY Sbjct: 175 ETIWTDEYDVFD-RVVDVHINSLRKKLGKDWIITVRGVGY 213 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 126/234 (53%), Gaps = 20/234 (8%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGA-GLREIMQNQSVDLILLDINLPDE 59 M I+I++D+ ++ T EGY V+V G GL +++++ DLI+LDI +PD Sbjct: 1 MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEP-DLIILDIMMPDL 59 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +GL + + LR+ + + I++VTG DR+ GLE GADDY+ KP ELV RVK LL R Sbjct: 60 DGLEVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRR 119 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 +D ++ +D F+ +++S R I+ + E+ +L F+ +P ++L+R Sbjct: 120 LDHKKK-----EDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTR 174 Query: 180 ERLLRMLSARRVENPDLR----TVDVLIRRLRHKLSAD----LLVTQHGEGYFL 225 E L+ RV D R ++V + LR KL A L+ T G GY L Sbjct: 175 ELLM-----DRVWGFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVL 223 >UniRef50_C8R030 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R030_9DELT Length = 240 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 129/234 (55%), Gaps = 11/234 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 HHI++++D+P + +EGY V ++ A + ++ DL++LD+NLPD +GL Sbjct: 8 HHILVIDDDPSLLYLCATVLLKEGYQVDYASNQAEAMQALEQNKYDLVILDLNLPDGDGL 67 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + L+++S + +++T RS +R++G E GA DY+ KP EL RV+ +L R++ Sbjct: 68 EIGQRLQQQS-IPFLVMTIRSQPAERLLGFESGAADYLIKPFLPHELTHRVRRVLPRLEE 126 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + +T R + ++ R L DG KLT E+++L A T G ++SRE+ Sbjct: 127 PSRFREYTSVPLGR---WHFDLKRQVLVAEDGRVTKLTGGEFKLLAALATADGRVISREQ 183 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 L +L AR RTVDVL+ RLR K+ + +++T G GY L + Sbjct: 184 -LSILVARETGGGHQRTVDVLVSRLRKKIEDNPRQPGIILTVTGAGYRLEKNAT 236 >UniRef50_A6M2A3 Two component transcriptional regulator, winged helix family n=13 Tax=Clostridium RepID=A6M2A3_CLOB8 Length = 242 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 21/241 (8%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 + I++VEDE L+ ++E + V +G +I + L+LLDI LPD + Sbjct: 2 LKKKILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDIS 61 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + + ++S I+++T R D ID+I+G+E+GADDY+TKP E+RE+ R+ + R+ Sbjct: 62 GFELCKIMSQKSY--IVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRRV 119 Query: 121 ----------DLARQAQPHTQDNC----YRFAGYCLNVSRHTLERDGEPIKLTRAEYEML 166 ++A + D+ + + +N T+ +DG+ I L R E+++L Sbjct: 120 SKNIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEFDLL 179 Query: 167 VAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD----LLVTQHGEG 222 N G + +R++LL + D RTVDV IRRLR L D ++ T G G Sbjct: 180 SYLYKNKGIVFNRQQLLNEVWGYDYYG-DTRTVDVHIRRLRANLGDDKENSIVETVFGVG 238 Query: 223 Y 223 Y Sbjct: 239 Y 239 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P38684 TorCAD operon transcriptional regulatory protein... 321 9e-87 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 317 2e-85 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 314 1e-84 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 314 1e-84 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 313 3e-84 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 312 5e-84 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 312 6e-84 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 312 7e-84 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 312 8e-84 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 311 1e-83 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_B8G179 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 310 2e-83 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 308 8e-83 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 308 1e-82 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 307 2e-82 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 306 3e-82 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_C4L340 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 305 7e-82 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 303 3e-81 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 303 3e-81 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 303 3e-81 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 303 3e-81 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 302 5e-81 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 302 9e-81 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 300 2e-80 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 299 4e-80 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 299 6e-80 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 299 6e-80 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 299 7e-80 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 299 7e-80 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 299 7e-80 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 298 9e-80 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 298 1e-79 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 298 1e-79 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 298 1e-79 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 297 1e-79 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 297 2e-79 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 297 2e-79 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 297 2e-79 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 297 2e-79 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 297 2e-79 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 297 2e-79 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 296 4e-79 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 296 4e-79 UniRef50_B8G223 Two component transcriptional regulator, winged ... 295 5e-79 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanob... 295 8e-79 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 294 1e-78 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 294 1e-78 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_D1C280 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 293 3e-78 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 293 3e-78 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 293 3e-78 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 292 4e-78 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 292 6e-78 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 292 7e-78 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 292 8e-78 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 291 1e-77 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax... 290 2e-77 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 290 2e-77 UniRef50_A4AL32 Putative two-component system response regulator... 290 2e-77 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 290 2e-77 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 290 3e-77 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 290 3e-77 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 289 4e-77 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 289 4e-77 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 289 4e-77 UniRef50_C0WE14 Two-component system transcriptional regulator n... 289 5e-77 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 289 5e-77 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 289 5e-77 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 289 5e-77 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 289 5e-77 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 289 6e-77 UniRef50_D1C683 Two component transcriptional regulator, winged ... 289 7e-77 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 289 7e-77 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 289 7e-77 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 289 8e-77 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 288 9e-77 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 288 9e-77 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 288 9e-77 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 287 1e-76 UniRef50_B8I014 Two component transcriptional regulator, winged ... 287 1e-76 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 287 1e-76 UniRef50_C5CP31 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 287 2e-76 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 287 2e-76 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 287 2e-76 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 287 2e-76 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 287 2e-76 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 287 2e-76 UniRef50_C7LZ74 Two component transcriptional regulator, winged ... 287 3e-76 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 286 3e-76 UniRef50_B8I272 Two component transcriptional regulator, winged ... 286 3e-76 UniRef50_A3ERN0 Putative two component transcriptional regulator... 286 4e-76 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 286 4e-76 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 286 5e-76 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 285 5e-76 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 285 6e-76 UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridi... 285 6e-76 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 285 6e-76 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 285 7e-76 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 285 8e-76 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 285 8e-76 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 285 1e-75 UniRef50_B8G869 Two component transcriptional regulator, winged ... 285 1e-75 UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 284 1e-75 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 284 1e-75 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 284 2e-75 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 283 2e-75 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 283 2e-75 UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphap... 283 2e-75 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 283 3e-75 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 283 3e-75 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 283 4e-75 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 283 4e-75 UniRef50_C1SP47 Response regulator with CheY-like receiver domai... 283 4e-75 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 282 5e-75 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 282 5e-75 UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional r... 282 5e-75 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 282 6e-75 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 282 6e-75 UniRef50_C1IA20 Two-component system response regulator n=1 Tax=... 282 6e-75 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 282 6e-75 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 282 7e-75 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 282 7e-75 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 282 7e-75 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 282 8e-75 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 282 9e-75 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 281 1e-74 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 281 1e-74 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 281 1e-74 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 281 1e-74 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 280 2e-74 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 280 2e-74 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 280 2e-74 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 280 2e-74 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 280 2e-74 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 280 2e-74 UniRef50_B5ZZQ5 Two component transcriptional regulator, winged ... 280 2e-74 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 280 2e-74 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 280 3e-74 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 280 3e-74 UniRef50_C4RGF6 Two-component system response regulator receiver... 280 3e-74 UniRef50_Q020N6 Two component transcriptional regulator, winged ... 280 3e-74 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 280 4e-74 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 280 4e-74 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 279 4e-74 UniRef50_A5VZA1 Two component transcriptional regulator, winged ... 279 4e-74 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 279 5e-74 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 279 5e-74 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 279 5e-74 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 279 5e-74 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 279 5e-74 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 279 6e-74 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 279 6e-74 UniRef50_C6D1N2 Two component transcriptional regulator, winged ... 278 7e-74 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 278 8e-74 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 278 1e-73 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 278 1e-73 UniRef50_C1SI97 Response regulator with CheY-like receiver domai... 278 1e-73 UniRef50_A6M2A3 Two component transcriptional regulator, winged ... 277 1e-73 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 277 2e-73 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 277 2e-73 UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Olig... 277 2e-73 Sequences not found previously or not previously below threshold: UniRef50_A9VV65 Two component transcriptional regulator, winged ... 315 7e-85 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 298 9e-80 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 298 1e-79 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 295 8e-79 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 294 2e-78 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 293 4e-78 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 289 4e-77 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 286 3e-76 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 286 4e-76 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 286 4e-76 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 286 4e-76 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 285 6e-76 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 285 6e-76 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 285 6e-76 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 285 1e-75 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 285 1e-75 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 284 1e-75 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 284 2e-75 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 283 3e-75 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 283 4e-75 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 282 9e-75 UniRef50_A7GLY2 Two component transcriptional regulator, winged ... 282 9e-75 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 281 1e-74 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 281 1e-74 UniRef50_A4J267 Two component transcriptional regulator, winged ... 281 2e-74 UniRef50_C4L703 Two component transcriptional regulator, winged ... 280 2e-74 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 280 2e-74 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 280 3e-74 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 280 3e-74 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 280 3e-74 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 280 3e-74 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 280 3e-74 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 279 5e-74 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 279 6e-74 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 278 6e-74 UniRef50_C6PCT6 Two component transcriptional regulator, winged ... 278 1e-73 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 277 2e-73 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 277 2e-73 >UniRef50_P38684 TorCAD operon transcriptional regulatory protein torR n=165 Tax=Gammaproteobacteria RepID=TORR_ECOLI Length = 230 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 230/230 (100%), Positives = 230/230 (100%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN Sbjct: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI Sbjct: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE Sbjct: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC 230 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC Sbjct: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC 230 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 9/232 (3%) Query: 1 MP-HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 MP H I++VED+ + L +EGYT+ G + L++LD+ LP Sbjct: 27 MPEHKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGI 86 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G L R +R S+V I+++T RS D++ GLE GADDY++KP +REL+ R+K LL R Sbjct: 87 DGFELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 T + + + RH + R+G + + E+++ V N + SR Sbjct: 147 SQTQNSQTETTGG--LKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSR 204 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 E+LL + RTVDV I LR K+ AD L+T G GY Sbjct: 205 EQLLEKVWGYDYPGW-TRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 113/231 (48%), Gaps = 6/231 (2%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IVEDE + + Y +E Y V +G ++ DLI+LD+ +P ++G Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L +R++S V II++T + + DRI+GL MGADDY+TKP RELV+RV+ +L R + Sbjct: 62 ELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + F + + ++LT E+E+L +P ++ SR +L Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAAD 228 L ++ E TV VL+ RLR KL + T G GY + Sbjct: 182 LELIWDFGHEGA-SNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPN 231 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 123/228 (53%), Gaps = 4/228 (1%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++ +D+P + ++ YF ++ + G E+M+ + D+++LD+ +P +G Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R +R++ II++T + + DR++GLE+GADDYVTKP RE+V R++ ++ R+ Sbjct: 94 ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQPK 153 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + + F +++ + + GE + E+++LV V +PG + SRE+LL Sbjct: 154 PKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQLL 213 Query: 184 RMLSARRVENPDLRTVDVLIRRLRH---KLSADLLVTQHGEGYFLAAD 228 + D+RT+DV I+++R KL D + T G GY D Sbjct: 214 EQVWGFDYFG-DVRTIDVHIKKIRQRLDKLPYDCIQTVWGIGYKFGVD 260 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 5/232 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +I++V+DE ++ Y EG+T+ + +G ++++ ++L +LD+ LPD + Sbjct: 1 MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + +RE +I++T + + ID+I GL +GADDY+TKP ELV RVK L R Sbjct: 61 GFTLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRF 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +P+ +++ F+G L++ H + + I LT E+ +L +N G ++S E Sbjct: 121 TKYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSE 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAA 227 L + + TV V IR LR K+ + T G GY + Sbjct: 181 ELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIEK 232 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + I+IV+DE + L+ Y +E + + ++G E+ + ILLD+ LP+ + Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + LRE II++T + + +R+ G E GADDY+ KP RE+V+RVK LL R Sbjct: 61 GIQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRT 120 Query: 121 DLA--RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 Q++PH +D F ++ H + D + + LT EYE+L+ P ++ Sbjct: 121 QSTTVEQSEPHARD-VIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFD 179 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLS------ADLLVTQHGEGYFLAA 227 RE+LL+ + DLRTVD ++RLR KL+ A ++ T G GY Sbjct: 180 REQLLKEVWHYEFYG-DLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 233 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 121/231 (52%), Gaps = 10/231 (4%) Query: 1 MPH---HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLP 57 MP I++V+DE + L S +E Y + ++G ++MQ + L+LLD+ +P Sbjct: 1 MPEQSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMP 60 Query: 58 DENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 + +GL +RE S V II++T RSD +DRI GL++GADDY+TKP REL+ R++ L Sbjct: 61 EMDGLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R Q L+ ++ G+PI LTR E+++L FV N ++ Sbjct: 121 RRSHRF----TVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVF 176 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD--LLVTQHGEGYFLA 226 SRE+LL + +LRTVD I+ LR KL + T G GY Sbjct: 177 SREQLLDQIWGADYIG-NLRTVDTHIKTLRLKLGEAGGSIQTVWGIGYKFE 226 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 10/232 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+IV+DEP ++SY +EGY V +G + DLI+LD +P+ + Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R +R++S + II++T +++ +D+++G E G DDYV KP LREL R+K +L R+ Sbjct: 61 GIEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRL 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +A+ ++ L + + G+P+ LT E+++L AF+ NPG+ SR Sbjct: 121 ----EAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRL 176 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 LL E + RT+D I LR K+ D + T G GY L Sbjct: 177 ELLEYAIGEAYEGYE-RTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKP 227 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 8/230 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+IV+DEP + ++ + GY G+ ++ DL++LD+ +P +G+ Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 64 LTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R +R R +I++T R + D++ GLE GADDYV KP RELV RVK +L R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +A D F ++ + HT+ GE + LT E+++LV +N G LSRE++ Sbjct: 194 RSEA----SDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKI 249 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAADVC 230 L+ + D RTVD ++ LR L + T G GY D Sbjct: 250 LQKVWNYDYFGED-RTVDTHVKMLRGHLGKCRGYIATVWGIGYKFDPDAA 298 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 122/233 (52%), Gaps = 13/233 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+DE + L + GY V + A G + + DL+LLDI LP+ +GL Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQ--RAPEADLVLLDIMLPEVDGLE 59 Query: 64 LTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + R L+ + S + II++T +++ IDR++GLE+GADDYV KP +REL+ RVK +L R Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 121 DLARQAQPHT--QDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 ++ ++ G L+ S + + I LT EYE+L VTNPG S Sbjct: 120 ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFS 179 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 R+ LL + D RTVDV IR LR KL D + T G GY A Sbjct: 180 RDELLERIWGYEYYG-DTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 7/231 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED A + Y V+ + GA + Q+ DLI+LDI LP + Sbjct: 1 MQKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMD 60 Query: 61 GLMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 GL + + LR ++ I+++T + DR+VGLE GADDY+TKP +REL RVK L R Sbjct: 61 GLQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D++++ D+ F C++ ++ L + I LT E+++L+ ++PG++ SR Sbjct: 121 TDMSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSR 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 E+LL + + + TV+ I RLR KL D ++T G GY Sbjct: 181 EKLLDAVWGYQHSGYE-HTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 6/230 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +V+V+DE L+ +EGY V G +++ + D++LLDI LP + Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R +R++ + II++T + ID+++GLE+GADDYVTKP REL+ RVK L R Sbjct: 61 GMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRH 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 N + +++++ GE I+LT E+E+ + G++++RE Sbjct: 121 YSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTRE 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 LL+ + D+RTVDV IRRLR K+ D +VT+ G GYFL Sbjct: 181 HLLQTVWGYDYFG-DVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+D+ L +Y +EGY+V G + + D++LLD+ LP +G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R S V II++T R D DRI+GLE+GADDYV KP +E++ R++ + R+ A Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + + L+ + +L G P++LT EY++L F+ +PG++ SR +L+ Sbjct: 122 SRRDGG--ERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAAD 228 + E + RTVD I+ LR KL + T +G GY L + Sbjct: 180 EKVQDYAFEGYE-RTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGE 228 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 7/229 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+++ED + +F +EG+ G + ++ DLI+LDI LP +G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R +RE STV II++T + D+++G EMGADDYVTKP LV R+K ++ R Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIK-LTRAEYEMLVAFVTNPGEILSRERL 182 +A ++ + +N + +GEP++ LT E+++L V NP ++ SRE+L Sbjct: 122 GKA--VIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAAD 228 L + + D RTVDV I+RLR KL+++ L T G GY D Sbjct: 180 LEQVWGYQFYG-DERTVDVHIKRLRKKLASEDKPFLYTVWGVGYKFDED 227 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 7/234 (2%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M ++I +DE + L+ Y +E YTV G ++ + + +L++LD+ +P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G+ + R LR + + I+++T + +D+IVGL +GADDY+TKP + E++ R+K L+ R Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + + F G +++S++ + + I LT E E+L F +NP ++ ++ Sbjct: 121 FLVLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTK 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +L R + D TV V IR+LR K+ AD + T G GY + Sbjct: 181 TQLFRNVWDSNYI-EDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 124/232 (53%), Gaps = 10/232 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++VED+ V Q + +EGYTV + G E++ + DL+LLD+ LP+ +GL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 64 LTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + + +R E + + +I+++ R + DR++GLE+GADDY+TKP REL+ R+K L Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 P + + + + + GE + LT E+E+L F+ P ++ SRE Sbjct: 123 RRNSTPPPLS----LTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSRE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS--ADLLVTQHGEGYFLAADVC 230 LL+ + V D RTVDV I LR KL + ++ + G GY LA + Sbjct: 179 YLLQKVWGYTVSG-DTRTVDVHISNLRSKLKSVSPIIESVRGVGYRLAVNYS 229 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP I+ V+D+P LQ +EG+ V +SG + + S DL++LD+ +P + Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + L+ + V II+++ R++ +DR+VG MG DDY TKP EL +RVK +L R+ Sbjct: 61 GFETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRL 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + +N ++ L+ ++ T+ + ++LT ++E+L +NP + ++ Sbjct: 121 GEPK----VNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKA 176 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 LL + D TV V IRRLR K+ D + T G GY + Sbjct: 177 HLLDKIWDSSFYG-DDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEYE 228 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+DE + L+ Y +E Y + +G + DLILLD+ +P +G+ Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R +RE+ II++T + + +R+ G E G DDY+ KP RE+V+RVK LL R Sbjct: 68 VCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQT 127 Query: 124 RQAQPHTQ-DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +T N F+ ++ H + DG + LT EYE+L P ++ RE+L Sbjct: 128 SYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREKL 187 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLS------ADLLVTQHGEGYFLAA 227 L+ + DLRTVD ++RLR KL+ A +VT G GY Sbjct: 188 LKEVWQYEFFG-DLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 139/238 (58%), Gaps = 11/238 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P HI++V+D+P +A L Y + G+ A G+ + +++ DL++LD+ LP ++G Sbjct: 4 PEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L R LR RS + +I++T D DRI+GLE+GADDYV KP RELV R++ +L R Sbjct: 64 LTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRAR 123 Query: 122 LARQ----AQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 + A+P RFAG+ L+ RH + DG + L+ AEY +L F+ P + Sbjct: 124 ALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRV 183 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 +SR++LL + R E D R++DVL+ RLR +L ++ T G+GY+LA DV Sbjct: 184 MSRDQLLDLTQGRAAEAFD-RSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATDV 240 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+D+ ++ Y +EG+ V G + ++ D+++LDI LP ++GL Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R LR + II++T + + DR++GLEMGADDYV KP RELV R+K +L R A Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 A + ++ G + + D ++T E+++L NP + +RE LL Sbjct: 126 DPAT----NWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELL 181 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSA---DLLVTQHGEGYFLAADV 229 + D RTVDV IRRLR KL++ + L T G GY V Sbjct: 182 GAVWGYDYFG-DQRTVDVHIRRLRTKLASLPHEYLQTVWGVGYKFTPPV 229 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 123/232 (53%), Gaps = 10/232 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++V+D+P + +EGY V +++ N+SVD+ ++DI LP +G Sbjct: 27 KKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDG 86 Query: 62 LMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 L R LR + ++ ++ + + D+++GLE+GADDY+TKP +RE++ R+K + Sbjct: 87 FELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFR 146 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 RI L+ Q + + G ++V R+ ++ + + LT E+E+L N G++ S Sbjct: 147 RIQLSAQ-EREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFS 205 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 R+ LL L D RTVDV IRRLR K+ D ++T G+GY Sbjct: 206 RDVLLDKLWGYDYYG-DTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 8/233 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+IV+D+ + Y +E + + G + +LILLD+ LP +G Sbjct: 4 KQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R +R+ ST+ II+++ + + D+++GLE+GADDY+ KP + +ELV RVK +L R+ Sbjct: 64 YEVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVV 123 Query: 122 LARQAQPHTQDNCY----RFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 ++ + +N S +++ G+ I++ E E+ ++P ++ Sbjct: 124 PSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVF 183 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL---LVTQHGEGYFLAA 227 +RE+LL + D RTVDV I+RLR K+ + L T G GY Sbjct: 184 TREQLLDHIWGYEYIG-DTRTVDVHIKRLREKIKDHISWRLSTVWGIGYKFEV 235 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++VEDE + + +Y +E Y V+ G E DL++LD+ LP G Sbjct: 8 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPG 67 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + RA+R+ S V II++T + + DRI+GLE+GADDY+ KP RELV RV+ LL R+ Sbjct: 68 ERVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVH 127 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A Q F ++VS H + G+ + LT +E+++L PG + SR Sbjct: 128 ----ADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRME 183 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 L+ + E + RT+D ++ LR K+ + L T HG GY Sbjct: 184 LVEKVLGYDFEGYE-RTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 128/233 (54%), Gaps = 10/233 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP HI++V+DEP L+ QEG+ V+ + G + DLI+LD+ LP + Sbjct: 1 MP-HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVD 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R +R II++T ++D ID+I+GLE+GADDY+TKP REL+ R++ +L R Sbjct: 60 GLTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRA 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + A + + L+ + E G P++LT EY++L +PG + +R+ Sbjct: 120 EAASRQDRAGR---LVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQ 176 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 LL ++ D RTVDV +RR+R KL D L T+ G GY+L A+ Sbjct: 177 ELLDLVWGYDFAG-DERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 132/232 (56%), Gaps = 7/232 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + I++V+D+ +A L+ Y T++G+ V A+ + ++ +S L++LD+ LP E+GL Sbjct: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 MLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR +S + II+VT + + +DRIVGLE+GADDY+ KP REL+ R++ +L R Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 P ++ F + LN+ + R+ EP+ LT E+ +L A V++P E LSR++ Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L+ + R + R++DV I RLR + D + T G GY D Sbjct: 185 LMNLARGREYSAME-RSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 6/230 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++IV+DE + L++ + GY V + G + + D+++LDI +P +G Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + +R+ S V II++T D DRI GLE+GADDYV KP +EL R++ +L R + Sbjct: 74 YGVCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTN 133 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A + T F +++++ + +D E I+LT E+ +L ++ G+ SR Sbjct: 134 KAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRAD 193 Query: 182 LLRMLSARRVE-NPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFL 225 +L+ + E + D R VDV I RLR KL DL++T G GY Sbjct: 194 ILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 129/233 (55%), Gaps = 7/233 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++VED+ T++ + Y G VS A G + IM + VDLI++D+ LPDE+GL Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L R +R RS V II++T R + IDRIVGLEMGADDY+ KP REL+ R+ +L R Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A A + C+ F G+ ++ L G + LT AE+++L AF G +LSRE Sbjct: 135 ALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSREV 194 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAADV 229 LL + + D R++DVL+ R+R K+ AD + T GY V Sbjct: 195 LLELTQGPNCGSFD-RSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTPVV 246 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 132/240 (55%), Gaps = 14/240 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM--QNQSVDLILLDINLPD 58 M I+++ED+P + Y Y V +G +I+ + +++DLI+LD+ LPD Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 59 ENGLMLTRALR-----ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRV 113 +G+ + + +R + + V I+++T + D DR++GLEMGADDY++KP E REL+ R+ Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 114 KNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNP 173 + +L R + QA +Q + F + H + D +P++LT ++++L F T+ Sbjct: 121 RAVLRRHEQPNQAD--SQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHA 178 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 G++L+RE+L + + + R +DV I RLR + + ++T G GY A D Sbjct: 179 GKVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 238 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++ +DE + L S +EGY ++G E ++ ++ L+LLD+ +P+ +GL Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 +RE S V IIL+T RS+ +DRI GL++GADDY+TKP REL+ R++ L R Sbjct: 67 ACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSF 126 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + Q T + +++ + G+ + LTR E+++L F+TN ++ SRE+LL Sbjct: 127 SKEQEAT----FDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLL 182 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD--LLVTQHGEGYFLAAD 228 + +LRTVD I+ LR KL + T G GY A+ Sbjct: 183 DQIWGTEYHG-NLRTVDTHIKTLRLKLGEAGGYIQTVWGIGYKFEAN 228 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++IV+DE + + Y ++ +G +I++N VD+IL+D+ +P +G Sbjct: 3 KKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L +RE+S V I+ +T R D D++ GL++G DDY+ KP EL+ R++ ++ R Sbjct: 63 FTLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAY 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 +Q ++ F ++ + DG+P+ LT E+++L+ + G++ SRE Sbjct: 123 HNKQ-----KNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSRED 177 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL--SADLLVTQHGEGYFLAA 227 LL + + RTVD I+ LR KL ++D + T G GY Sbjct: 178 LLAQVWGYDYTG-NARTVDTHIKTLRMKLKQASDFIQTVWGIGYKFEV 224 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +++V+DE + L+ Q+ V G E ++N D+ILLDI LP + Sbjct: 10 MAGRVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLD 69 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + + +RE S V II++T + D +D+I+GL+ GADDY+TKP + E+ R+K +L R Sbjct: 70 GLSVCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR- 128 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + Q + N + ++ +L + I LT E+++L NPG++ SR+ Sbjct: 129 -NSSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRD 187 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 LL+ + + D RTVDV +RRLR K+ + + T+ G GY+ Sbjct: 188 NLLKAVWGQDYTG-DARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 13/233 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ-SVDLILLDINLPDENGL 62 ++IVED+P + ++ ++EG G E++ + DL+LLD+ LP +G+ Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 63 MLTRALRE----RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 + R LRE TV ++++T R D +VGLE+GADDY+TKP R+L RV+ L Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R + QA P + F G +++ R + GE ++LT E+E+L +NPG + S Sbjct: 123 RQRMNAQASPEQRK--LEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYS 180 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 RE+++ L + R+ DV I+ LR K+ D + T G GY A Sbjct: 181 REQIMDHLWGGEFFG-EPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFA 232 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 8/229 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IV+D+ +A L Y GY VS SG G+ E ++ S +++LDI +P ++GL + Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R LR S V +I++T + + DRIVGLE+GADDY++KP REL+ R+K +L R Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGPE 126 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 P++ AG L+V+ LE +G+ ++L+ E+++L A + NPG ++R+ L+ Sbjct: 127 NNNPNSGQ--INVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMT 184 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAAD 228 + + D R++DV I +LR + T G GY ++ Sbjct: 185 SVWGKDFNAFD-RSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 10/234 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DEP ++ GY V + G + E+++ DLI+LD+ LP + Sbjct: 1 MKKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMD 60 Query: 61 GLMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G+ + R LR++S V I+++T D D+I GL+ GADDY+TKP +EL+ R++ + R Sbjct: 61 GIQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 I + + + + + DG I+LT E+E+L+ + G++LSR Sbjct: 121 IQTL---PGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSR 177 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAAD 228 ++LL + D R VDV I LR K+ + ++T GY L A Sbjct: 178 QQLLHGVWDYHFLG-DTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAP 230 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 13/232 (5%) Query: 1 MPHH--IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPD 58 M I+IVEDEP L +Y G+ G ++ ++ DL+LLDI LP Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 59 ENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 ++G+ + + LR S + II++T R + IDR++GLE+GADDY+ KP RE+V RVK +L Sbjct: 61 KDGMEVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLR 120 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R + P + L+ + G +KLT +E+ +L ++ P + S Sbjct: 121 RSN-----TPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFS 175 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFL 225 R LL + + E D RT+D IR LR K+ + + + +G GY Sbjct: 176 RNELLDLAIGSQFEGYD-RTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 119/236 (50%), Gaps = 12/236 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+DEP L Q GY V GA + QS ILLD+ LP +G+ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 64 LTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 +T+ LR+ II+VT ++D D++ GLE+GADDY+TKP RE++ R+K ++ R Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 123 AR-----QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 P ++ +++ + R+G+ I LT E+E+LV FV G +L Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 SR+ +L + + + R VD+ I LR K+ AD L+ T G GY D Sbjct: 185 SRDAILNHVWGYDYAS-ETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGD 239 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 122/228 (53%), Gaps = 11/228 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++VED+ L +EGY V V G + + DL+LLDI LP+++G Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + +R+ S V II++T + + +D+++GL+MGADDY+TKP +EL+ R++ +L R Sbjct: 62 EVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ + +++ + T++ G+ + L+ E+E+L +++PG + +R+ + Sbjct: 122 D-----LSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMI 176 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 ++ + + R VDV IR LR K+ D ++T GY Sbjct: 177 IKHIWGENFWG-EPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 127/233 (54%), Gaps = 12/233 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++VEDE + L + QEG+ V++ A G +I Q+ DLI+LD+ LP + Sbjct: 1 MDSLILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R+++ II++T R D +D+++GLE+GADDY+TKP REL +R+K +L R Sbjct: 61 GWEVMKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRR- 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 ++PH Q + +N R + LT E+++L+ NPG++ SR Sbjct: 120 -----SRPHEQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRL 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +L + E + RT+D I LRHK+ A + T +G GY L A+ Sbjct: 175 HILERVFGDIYEGYE-RTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 7/233 (3%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M I+I +DE ++ + +EGY V A G I++ Q +DL++LDI +P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G +TR +R + + II ++ ++ D++ GL +GADDY+TKP ELV RV L R Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 Q + + G ++ R T++ GE I+LT E+++L ++P ++ + Sbjct: 121 FLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNV 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 E + + + A TV V IR LR KL D L+ T G GY Sbjct: 181 ENIFQQVWADDYFEG-GNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 124/231 (53%), Gaps = 7/231 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DE + L+++ + +++ + + G + + DLI+LD+ LP+ + Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R+ I+++T + D++ G GADDY+ KP LREL+ R+K +L R Sbjct: 61 GEEVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + + Y+ ++ +R + +G LTR E+ +LV + NPG++ +RE Sbjct: 121 NQKAE---KAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTRE 177 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAAD 228 +L + + + D RT+D I+ +R KL+ + L++T +G GY D Sbjct: 178 QLAKKVMGLEYKGYD-RTIDAHIKNIRKKLNLEKNQLIITVYGVGYKFEGD 227 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 10/230 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DE + ++Y GY V +G ++ ++ DLI+LD+ LP + Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ +T LRE+S V I+++T RSD IDR+ GL +GADDY+TKP RELV RV+ +L R Sbjct: 61 GMEITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRR- 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + + RF ++ G+ ++LT E+++L+A N +LSRE Sbjct: 120 ----RRGKPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSRE 175 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA----DLLVTQHGEGYFLA 226 L+ + D R VDV + ++R K+ A +L+ T G GY Sbjct: 176 DLIEKVWGADFYGTD-RVVDVYVSQVRRKIEALTGENLIRTARGVGYRFV 224 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 8/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED+ L Y +EGY V + G + L+L+D+ LP + Sbjct: 12 MTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVD 71 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + R +R++S V II+V+ R ID+I L +GADDY+TKP ELV RVK+ L R Sbjct: 72 GFEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRY 131 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R Q+ F G +N +R +E DG+P+ LT E+E+L+ PG++ S+E Sbjct: 132 H--RYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKE 189 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAA 227 +L + + + D+RTV V I+ +R KL + T G GY Sbjct: 190 QLYNRVWKQD-DADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIG 240 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 121/242 (50%), Gaps = 20/242 (8%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H I++VEDE + +EGY V G DLI+LD+ LP +GL Sbjct: 2 HRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGL 61 Query: 63 MLTRALRERST--VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW-R 119 + R +R S+ + +I++T +SD I++IVGLEMGADDYVTKP REL+ RVK L R Sbjct: 62 EVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121 Query: 120 IDLARQAQPHTQDNCY-----------RFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVA 168 + N + + ++ + + ++LT E+E+L Sbjct: 122 TKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNI 181 Query: 169 FVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGY 223 VTN G++L+RE+LL + D RTVDV IR LR K+S DL+ T G GY Sbjct: 182 MVTNSGQVLTREKLLEKIWGYDFLG-DTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 224 FL 225 L Sbjct: 241 RL 242 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 8/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +++V+DE L + +EG+ + G + + + D I+LDI LP + Sbjct: 8 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 67 Query: 61 GLMLTRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G+ + + LR + S I++V+ +SD D+++ LE+GADDYVTKP REL+ RVK +L R Sbjct: 68 GIEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRR 127 Query: 120 IDLARQAQPHT-QDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + ++ Y + L RH + +D E + LT EYE+L+ + +P L+ Sbjct: 128 TEAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLT 187 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 RERLL + + R VDV I +LR K+ + + T G GY Sbjct: 188 RERLLERIWGYDF-GQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++IVEDE + ++ YF +EG+ V + G I VDL +LDI +P + Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R +RE S IIL+T +S D+++G E+GADDY+TKP + L+ + K LL R Sbjct: 61 GLAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 N F G +N H ++ +GE + L+ EY++L+ +N G LSR+ Sbjct: 121 GTL------NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRD 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL--SADLLVTQHGEGYFLAA 227 R+L + D+RTVD I+RLR KL A+ + T G GY Sbjct: 175 RILDNVWGYDYFG-DIRTVDTNIKRLREKLLDKANYIATVRGSGYKFEV 222 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 14/236 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M H+++VEDE LQ +EGY+V+V G + + DL+++D LP + Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 61 GLMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G+ + R LR E + V II++T R + DR+ GL+ GADDYV KP + EL R++ +L Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 RI +P ++ ++ H ++R I L E+ +L + +PG + Sbjct: 121 RRI------RPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVF 174 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRH----KLSADLLVTQHGEGYFLAADV 229 SRE+LL + V + RTVDV + RLR K D + T GY + Sbjct: 175 SREQLLDAVWGSDVY-VEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDVNA 229 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 7/229 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++I+EDE +++Y E Y VT +G I Q QS D ++LD+ LPD +G Sbjct: 5 KKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSG 64 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + +R +S V I+++T + + DRI GL++GADDY+TKP +ELV RV+ ++ R + Sbjct: 65 EEICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTN 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + N +++ + E ++LT E+++L F+ N G++ SR+ Sbjct: 125 NEGLKAHLIELNG---GDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDE 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAA 227 L+ + D RT+DV I+ LRHK+ + +VT +G GY Sbjct: 182 LVVKVLGYDYVGYD-RTIDVHIKNLRHKIECEYYKYIVTVYGVGYRFVK 229 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 15/236 (6%) Query: 1 MP-HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 MP ++IV+D+ ++ EG++V + G E ++ + + ++LDI LP+ Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 60 NGLMLTRALRE---RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNL 116 +G + +R S V II++T + + D+I+GL++GADDYV KP RELV RV+ L Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 117 LWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 + R + +D ++ + + + L E+E+L + NP + Sbjct: 121 IRRDQDFKD-----KDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERV 175 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 +RE +L + RTVD ++R+R KL + L+ T G GY Sbjct: 176 FTREEILEKIWGFSFAGG-TRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEV 230 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 8/232 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+I ED+P + + +EGY + A G ++Q ++DL++LDI +P +G Sbjct: 7 TILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYE 66 Query: 64 LTRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +RE+ + II ++ ++ D+I GL MGADDY+TKP EL+ RV L R Sbjct: 67 VVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQ 126 Query: 123 ARQ--AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 Q A P + G ++ + + + I LT E+++L ++P ++ S E Sbjct: 127 LNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAE 186 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + + + TV V IR LR KL D + T G GY Sbjct: 187 HIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 6/228 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 + I++V+DE + + Y EGY V +G E+++ + VDLI+LDI +P+ +G Sbjct: 3 KNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + +RE + II+++ +++ +D+I GL GADDY+TKP EL+ RVK+ L R Sbjct: 63 IEACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYK 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + D+ +N + H ++ + ++LT E+++L N G + S E+ Sbjct: 123 KFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEK 182 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYF 224 + + D TV V IR+LR K+ + + T G GY Sbjct: 183 IYERVWKEEFFKSD-NTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 111/232 (47%), Gaps = 6/232 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+IV+DE ++ Y E YTV + E + +DL +LDI LP + Sbjct: 1 MSDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + + +R++ T II++TG+ +D+I GL +GADDY+TKP EL+ RVK L R Sbjct: 61 GLTICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRY 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +N +G +NV+ H + + + LT E+ +L N G ++S E Sbjct: 121 KKF-SGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSE 179 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAA 227 L + + T+ V IR LR K++ + T G GY + Sbjct: 180 LLFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 10/226 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+D+ + + Y G+ V A G + + DL++LD+ LP +G+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LR V +I++T R+D DRI GLE+GADDYVTKP REL +RV+++L R + Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRAN-- 174 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + P + R ++ + T R G P+ LT E+++L + PG +R LL Sbjct: 175 -ETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELL 233 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYF 224 + +P TV V IRRLR K+ D LVT G GY Sbjct: 234 EHVWGWSYGDPS--TVTVHIRRLREKIEDDPTAPRMLVTVWGVGYR 277 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 8/223 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IV+DE + L+ Y +EGY VS G ++ + DL++LD+ LP ++G Sbjct: 7 KRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGW 66 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +++ + +I++T R D D + G EMGADDY+TKP + L+ RVK+LL + + Sbjct: 67 SILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ +N + H++ I+L EY++LV + N LSRE+L Sbjct: 127 MVES-------IIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKL 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFL 225 L + D RT+D I+ LR K+ + + T G GY L Sbjct: 180 LNEVWGYDFLG-DDRTIDTHIKNLRKKIGKNAIKTIRGIGYKL 221 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 110/230 (47%), Positives = 147/230 (63%), Gaps = 9/230 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 HHI++VED+PV + L +Y +EGY VS G +R++ Q+VDLILLDI LP +GL Sbjct: 4 HHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDGL 63 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L R +R +S VG+I+VTG+ D +DRIV LEMGADDYVTKP +REL+ R KNLL R Sbjct: 64 QLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLS 123 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 AR+A FAG+ L++ R L DG ++LTR E+E+L F + PG +++R+ Sbjct: 124 AREASEDENQK--SFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMTRDN 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 LL +S R P RTVDVL+ RLR K+ AD ++T HG GY A Sbjct: 182 LLDYVSHRDW-APSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFA 230 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 126/231 (54%), Gaps = 7/231 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 HI IV+D P + + Y TQEGY ++V A G LR ++ DLI+LD+ +P E+G Sbjct: 4 SQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L R +R RS ++ ++ R++ +D I+GLEMG DDY+ KP REL+ RVK LL R Sbjct: 64 LSLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRAT 123 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A + + RF + LN L DG + L+ E+ +L A + PGEI++R+ Sbjct: 124 PASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRD 183 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 LL +S R E D R++D I RLR K+ D + T G GY Sbjct: 184 ELLNKVSGRASEPFD-RSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 13/239 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM-QNQSVDLILLDINLPDE 59 M HI+IV+D L+ EG++VS SG ++ Q + +LILLDI +P+ Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G L +R + I+ ++ + +D++VG E+GADDY+TKP + EL+ R++ L R Sbjct: 61 SGYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 120 IDLARQAQPHTQDN--------CYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVT 171 + R+ + +F ++ +++ + I+L+ E+++L Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 172 NPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD--LLVTQHGEGYFLAAD 228 N G + +RE++ + + L TV V I+ LR KL + + TQ G GY + Sbjct: 181 NAGIVFTREQIYDRVWGYGYGS--LNTVTVHIKNLREKLETERQFIKTQWGTGYVFIGE 237 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 6/230 (2%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+IVED+ ++ +EGY + G E Q ++ ++++DI +P +G+ Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R +RE+S V II+++ + + D+I+GL MGADDY+ KP + EL+ RVK + R Sbjct: 65 SMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYY 124 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + ++ Y + +++ +T+ + G+ + LT E ++L F NP + ++ ++ Sbjct: 125 NETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQIY 184 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 + + D TV V +RRLR K+ D L+ T G GY L D Sbjct: 185 DSVWGEEFLS-DYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 102/232 (43%), Gaps = 6/232 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+IV+DE ++ Y E + V M+ + +DL LLDI +P + Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL L + +RER II++T + ID+I GL +GADDY+TKP + E+V RVK L R Sbjct: 129 GLELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRY 188 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + G LN H + + LT E+ +L G ++S E Sbjct: 189 KRYNMGT-VKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAE 247 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAA 227 L + + T+ V IR LR K+ + T G GY + Sbjct: 248 ELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIEK 299 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 123/233 (52%), Gaps = 11/233 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M H IV++EDEP L + GY V G +++Q++ DL+LLD+ LP + Sbjct: 1 MAHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMS 60 Query: 61 GLMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G + +A++ E + + II++T R D +DRI+G E+GADDYV KP REL++R+K +L Sbjct: 61 GTDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R H ++ G + +TL DG LT E+ + FV N G++L Sbjct: 121 RRNVNILPKVAH-----WQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVL 175 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAAD 228 SRE+LL E RTVD +RRLR KL D L T G GY + + Sbjct: 176 SREQLLSNAWGYEFEGY-SRTVDTHVRRLRKKLGPYADWLETVRGIGYRMKRE 227 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 6/230 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++V+DE + L++ T GY V ++G I + + L++LD+ +P +G Sbjct: 5 KEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDG 64 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + LR+ S V II++T + DRI GLE+GADDYV KP +EL R++++L R D Sbjct: 65 YGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRAD 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 ++ ++ + ++ E ++LT E+ +L V+ GE SR Sbjct: 125 KITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRAS 184 Query: 182 LLRMLSARRVE-NPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFL 225 +L+ + E + D R VDV I RLR KL DL++T G GY Sbjct: 185 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++VED+ L+ + T G+ V V G ++ DLI+LDI LP +G Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 63 MLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR+ I++VT +++ +D+++GLE+GADDY+TKP +RE++ RVK L R++ Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + ++ Q D + + + +GE + LT E+E+L+ F +PG SR+ Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 LL + + TV+ I RLR+K+ D + T G GY A Sbjct: 187 LLDEVWGYQYSGY-SHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFA 235 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 122/238 (51%), Gaps = 20/238 (8%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN---------QSVDLILLDI 54 I++VEDE V + + QEG+TV V A G ++ ++ DL++LD+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 55 NLPDENGLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRV 113 LP NGL R LR + TV I++++ + DR+VGLE+GADDY+TKP RELV R Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 114 KNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNP 173 + LL R Q QP R+ G L + D + L+ E+ +L F+ +P Sbjct: 145 RALLRRS----QNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHP 200 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 + SR++LL + D +T+DV IR LR K+ A+ L+T G GY L Sbjct: 201 RRVWSRDQLLEKIWGIDFMG-DSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRLG 257 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 139/232 (59%), Gaps = 8/232 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IV+D+ + L + + G VS+ G + ++M +VDLI+LD+ LP ++G+ Sbjct: 82 HVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGIE 141 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R S V II++T +D D+I+GLE+GADDY+ KP + REL+ R++ +L R++ Sbjct: 142 ICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRLENN 201 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R A + YRFAG+ L+ +R L ++LT AE+ +L AFV + ILSR++L Sbjct: 202 R-APSRPVTHSYRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHILSRDQL 260 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 + M + V D R+VD+LI RLR KL+ D L++T GY +V Sbjct: 261 MEMAGNQAVYGYD-RSVDILISRLRRKLNDDSRSPKLILTIRNGGYQFGHEV 311 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 6/234 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + I+IVED+ L+ + V G E Q++ DLILLD+++P N Sbjct: 6 MANQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLN 65 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R LR+ II+VT +++ ID+++GLE+GADDY+TKP +REL R K ++ R Sbjct: 66 GVEVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRS 125 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D A Q ++ F +NV + +G+ I L+ E+++L+ PG SR Sbjct: 126 DAANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRS 185 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 LL ++ + TV+ I RLR K+ D ++T G GY D+ Sbjct: 186 ELLDVIWGYNFSGYE-HTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNEDI 238 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 8/229 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+IV+D+ + Y T GY V+ G EI+Q+ ++LD+ +P +G Sbjct: 12 QILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFE 71 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + LR++S + ++++T + DRIVGLEMGADDY+ K REL+ R++ + R L+ Sbjct: 72 MLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRLS 131 Query: 124 --RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R + +DN +++ T G+P+ LT EY++L+ P +LSR++ Sbjct: 132 MDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRDQ 191 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 LL ++ R + D R+VDV I LR KL D + T GY Sbjct: 192 LLDAVAGRSYDVFD-RSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 130/231 (56%), Gaps = 10/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM-QNQSVDLILLDINLPDE 59 M H ++++EDE + L++Y GY V +G ++ +N+ + +ILLDI LPD Sbjct: 1 MMHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G L + +RE S V ++++T R + D+++G E+GADDYV KP RE+V RVK +L R Sbjct: 61 SGWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 ++ D + G ++V + DG+ I+LT E+++L + N G+++SR Sbjct: 121 TYGSQ------DDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSR 174 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAAD 228 E+ L + DLRTVD I++LR KL +L+ T G GY L D Sbjct: 175 EKCLNEVWGYDFYG-DLRTVDTHIKQLREKLGEKRNLIKTVWGIGYKLEGD 224 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 117/235 (49%), Gaps = 11/235 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++VEDE + L+ + QE + V EI++ VDL++LD+ +P +G Sbjct: 6 TVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWT 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R +RE S V I+ +T R + DR++G E+GADDYV KP RELV+RVK LL R Sbjct: 66 TCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSST 125 Query: 124 R----QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 +AQ T + F L GE + L+ EY++L+ N G +LSR Sbjct: 126 PPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLSR 185 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS------ADLLVTQHGEGYFLAAD 228 + LL + D RTVD +RRLR KLS A + T G GY + Sbjct: 186 DLLLDRVWGYEFAG-DSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVN 239 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 122/233 (52%), Gaps = 9/233 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DEP + Q Y V +G EI+Q VD +++D+ LP + Sbjct: 1 MSKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLD 60 Query: 61 GLMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G+ T+ +R+ + II++T ++ ++D+I+GLE+GADDY+TKP +EL+ R+K +L R Sbjct: 61 GIEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D R D + ++ R ++++ E I+LT E+++L N ++LSR Sbjct: 121 TD--RAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSR 178 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 +++L + R VD+ I LR KL D L+ T G GY + Sbjct: 179 DQILEKVWGYEYGGQ-TRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVS 230 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 127/229 (55%), Gaps = 9/229 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I ++ED+ L F +EG+ V +G E ++ + D+++LD+ +P+ +GL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 65 TRALRERST---VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + +R + +I++T +S ID+IVGLE+GADDYVTKP REL+ RVK LL R Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRR-- 121 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 ++ T Y+F ++ + + G+P+ LT ++++L+A V + G++LSR+ Sbjct: 122 -SKSLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDY 180 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAAD 228 ++ + A + D RT+DV I++LR L + + T G GY + Sbjct: 181 IIEHVWAWDKDVYD-RTIDVHIKKLRELLKEYGNCIKTIRGVGYKWECE 228 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 7/232 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+D+ + LQ + +G+ V + ++Q + LI+LD LP E+GL Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 63 MLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR+ + II++T R DRI GLE GADDY+ KP EL+ R++ +L R Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQV 140 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 P Q F + L++S TL R+G+ + LT E+ +L A V +P E L+R++ Sbjct: 141 REVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDK 200 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L+ + R R++DV + RLR + + + T G GY D Sbjct: 201 LMNLARGREW-GAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPD 251 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 129/230 (56%), Gaps = 12/230 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 ++I++DE + L+ F QEG+ VSV G + ++ S D I+LD+ LP +G+ Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L +R++S V II++T + ID+I+GLE+GADDY+TKP REL+ R++ L+ R Sbjct: 78 LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRR---- 133 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 Q + + + Y+F +++ T+ R E I LT E+++LV + N G + RE + Sbjct: 134 -QEKGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIF 192 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAAD 228 +++ D RT+DV ++ LR KL ++ T+ G GY+ D Sbjct: 193 QLVWGEPC--YDTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 126/238 (52%), Gaps = 12/238 (5%) Query: 1 MPHH-IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M I+ VEDE L+ +EG+ VS +GA + + Q+ D I+LD+ LPD+ Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 NG + + LR++ ++ +T R D IDR+VGLE+GADDY TKP RE+V R+K + R Sbjct: 62 NGFEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRR 121 Query: 120 I-----DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPG 174 + +++ Q + + A + N ++ G+ ++LTR EY +L + +P Sbjct: 122 MEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPE 181 Query: 175 EILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAA 227 ++ SR++L+ + E+ RTVD I+ LR KL D + T G GY L Sbjct: 182 KVFSRQQLMDHIW-EHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSLVK 238 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IVEDE L +EG+ +V G + D++LLD+ LP +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + LR RS+V +I+VT R ID++VGLE+GADDYVTKP REL+ R++ +L R Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 A D ++V RH + +GEPI L E+++L + N G +L+R +L+ Sbjct: 124 DA--GADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLID 181 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAA 227 + D +T+DV ++RLR K+ D LVT G GY L Sbjct: 182 RVWGADYVG-DTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 7/231 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 + +++V+DE ++ +E Y + +G G E Q +S DL++LD+ LP +G Sbjct: 4 TYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R +RE S V I++++ + + ID+ VG +GADDY+ KP EL +RVK LL R Sbjct: 64 YEVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSF 123 Query: 122 LARQAQPHTQDNC-YRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 Q+ + +N H + G+P+ LT E+E+L +P ++ +RE Sbjct: 124 DKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTRE 183 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 +L + R D T+ V IR+LR K+ D + T G GY + Sbjct: 184 QLFAHMW-RDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKFS 233 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 8/231 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++V+DE +++Y ++G+ V G +I N+++ LI+LD+ LP G Sbjct: 4 KFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + +R S+V II++T +++ ++I G+ MGADDY+TKP +RELVVRV+ LL R Sbjct: 64 EEVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRA- 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R P + +++ + +++ G + LT E+++L F++NP ++ SRE+ Sbjct: 123 -YRDFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREK 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 L+ E D RTVD I+ +R K+ ++ + T +G GY Sbjct: 182 LVEKAFGANYEGFD-RTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIP 231 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 11/228 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+DEP + L+ Y QEG+ V G + + + DL++LD+ +P+ G Sbjct: 3 TILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYE 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 RA + S +I++T + + D+I+GLE+GADDYVTKP +REL+ R++ +L R Sbjct: 63 FLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ-- 120 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 Q + + R A L+ + T+ G + LT +E+ +L + PG++ SR LL Sbjct: 121 ---QTPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLL 177 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 +S E + RT+DV IR LR K+ AD + T +G GY A Sbjct: 178 DRVSGDAFEGSE-RTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP1_OCEIH Length = 227 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 3/228 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M HI +VED+ Q + +Y +EGY ++ + ++ +N D+ +LDI LP + Sbjct: 1 MTVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + +R S V II+++ + + ID+I+GLE+G DDY+TKP REL+ RVK L R Sbjct: 61 GYEFCKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R Q +++ + + + + +GE + T EY+ML+ NP SRE Sbjct: 121 TSHR--QDEIEEDRVKVDQLLVYKNERRVFFEGEEFETTTKEYDMLLLLAENPNRAFSRE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAAD 228 LL + D R VD LI+R+R K+ L T G GY L D Sbjct: 179 ELLMKIWGNDYFGSD-RAVDDLIKRIRKKMGNIPLETVWGFGYRLRKD 225 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M IVI++D+ + ++ Y +G+ S G L +I+Q + DLI+LD+ LPDEN Sbjct: 1 MKKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDEN 60 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 GL + + LR + II++T + D +DRI+GLEMGADDY+ KP REL+ R+ ++ R Sbjct: 61 GLDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRR 120 Query: 120 IDLA-RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 ++ + +F + N TL++D + I LT E+ +L F+ N + LS Sbjct: 121 HEMELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLS 180 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 R++++++ + ++ D R++DV I R+R + D L T+ G GY Sbjct: 181 RDQIMQLAKGKELDVFD-RSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVFE 232 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +I+IV+DE ++ Y EG+TV +G E ++++++D+ +LDI LPD + Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +RE+ II++T + + ID+I+GL +GADDY+TKP E+V RVK L R Sbjct: 61 GFHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120 Query: 121 DLARQAQPHTQ--DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + N Y G +N H G+ + LT E+ +L + G+++ Sbjct: 121 MRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVP 180 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGY 223 E L + + + + TV I RLR K+ + + T G GY Sbjct: 181 SEELFEAVWGEKYLD-NNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 16/240 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +I++ +DE + Y +EG+ V V +G + + DL++LD+ +P + Sbjct: 1 MGANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + +R+ II++T R + DR++GL MGADDY+TKP RELV+RV N+L R Sbjct: 61 GLEVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRA 120 Query: 121 DLARQAQPHTQD----------NCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFV 170 +A P +D G + + ++LT E+++L Sbjct: 121 GWRSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLA 180 Query: 171 TNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 PG++ SR +LL + + D TV V +RRLR K+ + + T G GY L Sbjct: 181 MYPGKVFSRSQLLNQVWDIAFDG-DTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 1 MP-HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M +HI IV+D+ + +++Y +EGY + S + Q DL +LDI LP Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 NG R +R S II+V+ R + +D+I+GLE+G+DDY+TKP RELV RV L R Sbjct: 61 NGYEFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + T + L+ + + GE +++T E+++L +P SR Sbjct: 121 WKQMKSHAEQTA-----ISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSR 175 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAA 227 + LL ++ D R VD LIRR+R KL L T G GY L Sbjct: 176 DELLSLIWGFDYFGSD-RVVDDLIRRIRKKLDKIPLETVWGFGYRLRT 222 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 294 bits (754), Expect = 1e-78, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 111/230 (48%), Gaps = 6/230 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I++DE L+ Y E Y V +++ +DL +LDI LPD N Sbjct: 18 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + +R++ T II++T + + D+I GL +GADDYVTKP E+V RVK L R Sbjct: 78 GFSLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRY 137 Query: 121 DLARQAQPHTQ-DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + + + CLNV H DGE + LT E+ +L +++ G ++S Sbjct: 138 KKYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSI 197 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYF 224 E L + + + T+ V IR LR KL+ + T G GY Sbjct: 198 EELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYK 247 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 130/234 (55%), Gaps = 9/234 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSV-DLILLDINLPDE 59 M H I+I++D+ QA L+ YF + V+ +G + + + D+++LDI LPD Sbjct: 1 MTHRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + +R S V +I++T R D+ DRI+GLE+GADDY+ KP REL+ R+K +L R Sbjct: 61 DGFETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRR 120 Query: 120 IDLARQAQPHTQDN--CYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 + +A P + + F ++ + L + G I +T E ++L A +++ G L Sbjct: 121 ATASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPL 180 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 +R+RLL + S R E D R++DV I R+R KL D + T G+GY A Sbjct: 181 TRDRLLDLASGRDFETFD-RSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWA 233 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 HI+I +D P L +Y +E + A G + + + ++LLD+ +P E+G Sbjct: 2 QHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGY 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R +S V +IL+T R + ++I+GL++GADDY+ KP E++ R++ +L R + Sbjct: 62 EVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRR--M 119 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ T +N A +N+ +TL G I LT+ E E + +NP ++ +R+ L Sbjct: 120 TKKENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNL 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLS----ADL-LVTQHGEGYFLAAD 228 L L D RTVD I+RLR KL + + T G GY D Sbjct: 180 LDSLWGFDYFG-DSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVD 229 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 120/236 (50%), Gaps = 12/236 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +++V+DEP L+ Q + V +GA +++N D++LLD+ LP+ +G Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGE 61 Query: 63 MLTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + +R +R+ +I++T + D++ GLEMGADDYV KP RE++ R+ +L R + Sbjct: 62 EVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYE 121 Query: 122 LARQ-----AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 + A P + + ++ ++ + + + +KLT E+E++ V + ++ Sbjct: 122 KSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQV 181 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 LSR++LL+ + R VD+ I LR K+ D L T G GY + Sbjct: 182 LSRDQLLQGVWGFDYSGQ-SRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFST 236 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IV+DEP ++S F +EG+ V T SG ++N++ DL++LDI LP +G Sbjct: 2 QRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGF 61 Query: 63 MLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R +R +I++T R+D +DR+VGLE+GADDYV KP RELV RV+ LL R Sbjct: 62 GVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTA 121 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A + + D +G L+ +R + L E+++L ++PG++ +RE Sbjct: 122 EASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREV 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFL 225 LL + E D RTVDV IRRLR KL ++L+ T+ G GY Sbjct: 182 LLGQVWGYD-EYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 7 IVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTR 66 +VEDEP + EGYTV G E+ + + D+++LD+ LP +GL + R Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 67 ALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQ- 125 ++ V ++++T R D D++VGL +GADDY+TKP +RELV RV L+ R++ AR Sbjct: 82 RVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARAL 141 Query: 126 -AQPHTQDNCYRF----AGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 P RF ++ ++ + R G + LT E+++LV +P +L+RE Sbjct: 142 VGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTRE 201 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAA 227 +LL + + RTVD ++ LR KL ADL+ T HG GY Sbjct: 202 KLLEEVWDW-ADASGTRTVDSHVKALRRKLGADLVRTVHGVGYAFEP 247 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 88/235 (37%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP HI++V+D+ + L + ++ + V+ R N L++LD+ LP E+ Sbjct: 27 MP-HILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGES 85 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ R LR S V II++T + DRI+GLE+GADDYVTKP RELV R++ +L R+ Sbjct: 86 GIDFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRV 145 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHT-LERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + YRFAG+ L SR L+ G + LT EY++L+A + P +L+R Sbjct: 146 GENETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTR 205 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 + LL +L R+ P R +DV I RLR KL D ++ T G GY LA V Sbjct: 206 DMLLDLLRGRQA-GPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLAVPV 259 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 10/229 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ---NQSVDLILLDINLPDENG 61 IV+VEDE ++ +EG+ V V GA E + DLI+LD+ LP+ +G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R +R+ I+++T RS +DR++GLE+GADDY+TKP LREL RV +L R++ Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 122 LARQ-AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + R ++ ++ + G+P+ LT E+++L NPG + SR+ Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSRD 183 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYF 224 LL + D RTVD I RLR KL A+ +VT G GY Sbjct: 184 YLLHRVWGEDYVGVD-RTVDTHILRLRKKLGGPGSPAERIVTLWGVGYK 231 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+D+P +++ QE + V S + E ++N DLI+LDI LPD +GL Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 64 LTRAL-RERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + L R+ + +I +T R +D I+GLE+GADDY+TKP R L+ R+K + R ++ Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + N + ++++ +++ +DG+ +L R E+E+L + NPG++ +R+ + Sbjct: 122 GPK-----DRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEI 176 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLA 226 L + D RTVDV I +LR K+ ++ + T G GY L Sbjct: 177 LDRVWGMDFFG-DFRTVDVHISKLREKIGSEFIKTVRGVGYKLV 219 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 14/234 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++VEDE + + Q G+ + DLILLD LP + Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLMLTRALRERS---TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G+ + L+ S + ++++T R + DR+ GLE GADDY+TKP +ELV R+K ++ Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 RI P + G L+ + H + EP+++ E+++L F+T+P + Sbjct: 121 RRIS------PMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVY 174 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS----ADLLVTQHGEGYFLAA 227 SRE+LL + V D RTVDV IRRLR L ++ T G GY + Sbjct: 175 SREQLLNHVWGTNVYVED-RTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 9/228 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IVEDE L +EG+ +V G D++LLD+ LP +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + LR RS+V +I+VT R ID++VGLE+GADDYVTKP REL+ R++ +L R Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR---GG 120 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 D ++V RH + +G+ I L E+++L + N G +L+R +L+ Sbjct: 121 DDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLID 180 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAA 227 + D +T+DV ++RLR K+ AD LVT G GY L Sbjct: 181 RVWGADYVG-DTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+I +D + +Y + T G E + DL++LD+ +P G Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + +R+ S V II++T + + IDRIVGLE+GADDY+ KP RE+V R+K + R+ Sbjct: 65 EVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGN 124 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 A + F + +++ ++ + + E I +T E ++L TN G +LSRE + Sbjct: 125 AN-IDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEI 183 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD----LLVTQHGEGYFLAA 227 L + D R VD I+R+R K+ + + T +G GY Sbjct: 184 LDKVWGYDYFG-DTRVVDTQIKRIRKKIPEEGEKWSIKTVYGIGYKFEV 231 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 123/231 (53%), Gaps = 7/231 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++++DE + + +EG+ V +G + + DL+LLD+ LPD +G Sbjct: 2 KKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGY 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L + + ++S + +I+V+ + + ID+++GLE+GA+DY+TKP + REL+ R+K +L R + Sbjct: 62 DLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYEH 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +A+ + +N ++++G I LT EY +L P +I +R+ L Sbjct: 122 NDEAK-YEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDEL 180 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L ++ D R+VD+ I RLR K+ D + T +G GY L D Sbjct: 181 LEIVWGYDYSG-DSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGD 230 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 7/229 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+D+P Q ++Y ++EG+ ++ A+GA ++ + DLI+LD+ LPD +G + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI-DLA 123 R +R ++ V I+ ++GR D ID+I+G +G DDY+TKP LV +VK+ + R +L+ Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + F ++ + R+G+PI L E+++L N G + S E L Sbjct: 126 GSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLF 185 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + + D+RTV V I LR K+ D ++T G GY Sbjct: 186 DSIWGKDSFG-DIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 12/233 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 +++VEDE + + GY V SG ++ DL++LD+ LP +G Sbjct: 5 KVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDG 64 Query: 62 LMLTRALRERSTVG-IILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L + + +RE II++T + D+I+GLE+GADDY+ KP EL+ R+K +L R Sbjct: 65 LEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRR 124 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D + Y + L+ + + L ++ + ++LT EY +L F+ NPG+ L RE Sbjct: 125 DRYEAGRTG-----YTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRRE 179 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +L + D +T+DV IRRLR K+ + + T G GY + Sbjct: 180 EMLNGIWGEDYFG-DTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 84/238 (35%), Positives = 123/238 (51%), Gaps = 18/238 (7%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP +I+IVED+ ++ +E +T VT G I Q Q DLI+LD+ LP + Sbjct: 11 MP-NILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLD 69 Query: 61 GLMLTRALRERS---TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + +R++ I+++T + + IDRI+GL GADDY+ KP RELV RV+ LL Sbjct: 70 GLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALL 129 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLER----DGEPIKLTRAEYEMLVAFVTNP 173 R RQ QP Q YR + +++ +H R E ++LT E+ +L F++ P Sbjct: 130 RR--QLRQGQPVGQ--IYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYP 185 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 G + +R +L+ L D R VD IRRLR K+ D + T G GY Sbjct: 186 GRVWNRTQLIEKLWGNDFFG-DERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 292 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 7/229 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED+ Q + + + EGY V G + + S DL++LDI +P+ + Sbjct: 1 MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R+ S+V II +T +D D++ G ++ DDY+TKP L+ RV+ +L R Sbjct: 61 GYGVCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + D F L+++ + E DGEPI+LT E+ +L A + ++++RE Sbjct: 121 NKT------INDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITRE 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADV 229 LL + D R VD I+ +R K+S + T G GY L D+ Sbjct: 175 GLLDSIWGYDYYG-DTRIVDAHIKNIRKKISLPYIKTVKGIGYTLEKDI 222 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 129/235 (54%), Gaps = 8/235 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 HI++VED+ + Y VSV + ++ + VDLI+LD+ LP E+G Sbjct: 17 TPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGEDG 76 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R LR +ST+ I+++T +S+ IDRIVGLE+GADDY+ KP REL+ R++ +L R Sbjct: 77 LSICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR-G 135 Query: 122 LARQAQPHTQDNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A+ FAG+ L+ R L DG + LT AE+++L A PG +LSR+ Sbjct: 136 SGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSRD 195 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 +LL + R P R++DVL+ R+R K+ D ++ T GY +V Sbjct: 196 QLLDLTQGR-APGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEVS 249 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 3/227 (1%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P +V++EDEP + T EG+ VS G + D+++LD+ LP +G Sbjct: 14 PVRVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDG 73 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R ++ V ++++T R D D +VGL +GADDY+TKP +RELV R+K LL R+ Sbjct: 74 LEVCRRIQADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVR 133 Query: 122 LARQAQPHTQD--NCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 A P + + ++ + + R G P LT E+++L+ PG +L+R Sbjct: 134 RAAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTR 193 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLA 226 E+LL + V+ RTVD ++ LR KL +DL+ T HG GY L Sbjct: 194 EQLLADVWDW-VDATGTRTVDSHVKALRRKLGSDLVRTVHGVGYALE 239 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+DE + L+ Y T+EG+ V +G E+ N D+ILLD+ LPD +G Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +RE+ V I+++T RS+ D++ GL +GADDY+TKP E EL+ RV +L+ R + Sbjct: 75 VCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + Q+ F + + ++ T+ E+++ ++ + SRE L+ Sbjct: 135 QSIRR--QEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELV 192 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHK-----LSADLLVTQHGEGYFLAA 227 ++ E ++R VD I+ +R K L + + T G GY Sbjct: 193 NLIWGDEYEG-EVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNG 240 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 4/230 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP+ I++ +DE ++ L+ Y GY V A G +++ Q VD+ LLDI +P+ + Sbjct: 1 MPYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + LRE S V +I+V+ + ++I+GL +GADDY+ KP E V RV + R+ Sbjct: 61 GYQVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRL 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 AQP R L+ L +GEP++LT EY ++ F+ +PG + +++ Sbjct: 121 KGMAAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQ 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAA 227 ++ + +V V + RLR KL D + T G GY L Sbjct: 181 QIYECGWDEDYVAAE-NSVMVCMSRLRSKLGDDGQEAIKTIRGLGYRLEK 229 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 122/231 (52%), Gaps = 11/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++++DE + L+SY EG+ V +G + ++ DLILLDI +P+ Sbjct: 1 MAQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL RA + + IIL+T + + D+I+GLE+GADDY+TKP RE++ RV+ +L R Sbjct: 61 GLDFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A Q + R L S TL + + LT +E+E+L + +PG + SR Sbjct: 121 YKA-----QPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRL 175 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 LL S + E + RT+DV IR LR K+ D + T +G GY A Sbjct: 176 DLLDRTSGQAYEGYE-RTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 2/227 (0%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+I+EDE L +EG+ + +G+ ++ DL++LD LPD +G Sbjct: 3 KTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDRSG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + + + + + I+++T RSD D+I+GLE+GADDY+TKP +LRE+VVR++ +L R+ Sbjct: 63 LDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLA 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A+ + F ++ + + + GE + LT E+++L+A + G I +R Sbjct: 123 QAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAE 182 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLS-ADLLVTQHGEGYFLAA 227 LL + D+RTVD I+RLR KL ADL+ T G GY Sbjct: 183 LLESVWGYDFPG-DMRTVDTHIQRLRKKLDAADLITTVFGIGYKFEK 228 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 87/234 (37%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 HI+IVED+P L G+ S SGA + +M Q DLI+LD LP E+G Sbjct: 12 QAHILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDG 71 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR +V I+++T + IDRI+GLE+GADDYVTKP REL+ R+K++L R Sbjct: 72 FSICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRAS 131 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A + F+G+ ++ L + DG + +T AE+++L+AF NP ++L+RE Sbjct: 132 YAHHQEEAL--GPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTRE 189 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAADV 229 +LL M A P R++D I R+R K+ +L + T GY A+ V Sbjct: 190 QLLSMTHAGSA-GPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKV 242 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 131/235 (55%), Gaps = 8/235 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 +HI++V+D+ + L Y G+ VS A+G + ++ + V+LI+LD+ LP E+G Sbjct: 4 QNHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L R +R + + II++T + +DRI+GLE+GADDY+ KP + REL+ R+K +L R Sbjct: 64 LSLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTR 123 Query: 122 LARQAQPHTQD-NCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 R + + F G+ L+ +R +G + L ++Y +L A + +P LSR Sbjct: 124 NDRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSR 183 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 + L+ + + D R++DV I RLRH + AD ++ T GY LA+ V Sbjct: 184 DFLVEHVYGKESHAMD-RSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQV 237 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 126/232 (54%), Gaps = 9/232 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IVED+ L T+ G V + +GA + + NQ DLI+LDI LP ENGL Sbjct: 28 HVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGENGLS 87 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LR + V ++++T + IDRI GLE+GADDYVTKP REL R++ LL R A Sbjct: 88 ICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRTAYA 147 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + RF G+ L+ R L + + T E+++L+AF NPG +LSRE L Sbjct: 148 --PDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGRVLSREEL 205 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L ++ + P R+VDV + R+R K+ D LL T GY A V Sbjct: 206 L-SVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIFTATV 256 >UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax=Actinobacteria (class) RepID=CSEB_STRAW Length = 235 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 8/233 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 H++ VED+ V + Q ++G+ V+ G E + D+ LLD+ +P +G Sbjct: 4 QTHVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + L R +R+ STV +I+++ R+D ID ++GLE GADDYVTKP + LV R++ +L R Sbjct: 64 VSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFG 123 Query: 122 LARQAQPHTQDN-------CYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPG 174 A ++ F ++ + R G+P+ LT E +L+ F + PG Sbjct: 124 HASGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPG 183 Query: 175 EILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAA 227 +LSR++LL + D R VDV ++RLR K+ D + T G GY L A Sbjct: 184 TVLSRDKLLERVWDYGW-GGDTRVVDVHVQRLRTKIGQDRIDTVRGFGYKLKA 235 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 13/231 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEG-YTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M IVI+ED+ ++ QEG + V++T +G + +LILLDINLP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 60 NGLMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNL 116 NG + R LR + V II++T R+D D+I GL +GADDY+TKP +REL+ R+ + Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 117 LWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 L R + T + Y ++ + + G+ I LTR E+ +L + G + Sbjct: 121 LRRTEG-------TPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRV 173 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-LLVTQHGEGYFLA 226 L+RE LL + + + RT+DV IRR+R KL D + T G GY Sbjct: 174 LTREYLLDRVWGIDYDG-ETRTLDVHIRRVRQKLGIDGYIETAVGIGYRFV 223 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 12/228 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +++VED+P +Y G+ V+ G G + + DLI+LD LP +G Sbjct: 40 RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGS 99 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R R V IIL+T +RI GLE GADDY++KP RELV+RV+++L R Sbjct: 100 EVCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 T + + + L+ S H++ R GE + LT E+++L + +PG+ SRE+L Sbjct: 160 D-----LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQL 214 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 L+ + E DL TV V +RRLR K+ D +L T G GY L Sbjct: 215 LKSVWG--WEFGDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H I IV+D+ ++ L Y + G++ + EI + LI++DI LP NGL Sbjct: 5 HTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNGL 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L R LR STV +I +T D DRIVGLE+GADDY++KP E REL+ R++ +L R + Sbjct: 65 ELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTEG 124 Query: 123 ARQAQPHTQDNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + + +FAG+ L+ S RH + DG + L+ EY +L F+ NP +LSR+ Sbjct: 125 GAR-RDQPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRVLSRDE 183 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 LL R D R++DV I RLR +L L+ T G+GY LA DV Sbjct: 184 LLERTQGRNAVPYD-RSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATDV 235 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 8/229 (3%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 ++VEDE A + SY + GY V++ G ++ + D+++LD+ LP +G+ + Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 66 RALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL--A 123 R LR S ++++T RSD +D ++GL +GADDY+TKP REL+ R++ +L R Sbjct: 127 RRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKTG 186 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 ++A T F ++V + E + LTR E+++L P + SR +L+ Sbjct: 187 QRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQLI 246 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + D VDV I LR KL D L T G GY + Sbjct: 247 DRVWGEDWVG-DEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMGT 294 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 + I+I +DE L Y EGY A+G + +I+ + VDL+LLD+ +P+ +G Sbjct: 5 QYTILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDG 64 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR + +I+VT +SD DR+ GL GADDY+ KP +EL+ R++ + R Sbjct: 65 MEALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNY 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + ++ +N++ + DGE + LTR E+++LV F+ +P ++ +RE+ Sbjct: 125 GYNDDESKEE---LQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQ 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL--SADLLVTQHGEGYFLA 226 LL + RTVD ++ +R K+ D T +G GY L Sbjct: 182 LLDHVWGVNYTTGGHRTVDTHMKTMRFKMGSGGDYFRTVYGVGYVLE 228 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 11/227 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + I++VED+ Q L E Y G E ++ DL++LD+NLP ++G Sbjct: 2 YKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGF 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + ++ R V +I++T R + +D+I G +G DDY+TKP EL++R+K +L R Sbjct: 62 SVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R ++ ++ +N+ + ++GEP++LT EY +L NP I ++E++ Sbjct: 122 GRG-----EEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQI 176 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYF 224 + L D V VL+RRLR K+ D ++ T G GY Sbjct: 177 MDRLWP-DTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 11/228 (4%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 ++V+D+ + + Y G+ V G ++ VD+++LD+ LP+ +G + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 66 RALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 +R R T + +I++T D DRI+GL+ GADDY+ KP RELV RV+ +L R LA Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLA- 120 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 P + R G ++V++ ++ + + LT E+++L ++P ++ SRE LL Sbjct: 121 ---PADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLD 177 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAA 227 + + D RTVDV + RLR KL A + L T G+GY Sbjct: 178 RVWGLDFDG-DSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVV 224 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 7/230 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++I+ED+ ++ + G + G E + + D+I+LD+ LP +G Sbjct: 3 QKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDG 62 Query: 62 LMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L + + LR+ V I+++T RS+ D++ L GADDY+TKP +REL RV + R Sbjct: 63 LEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRY 122 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 ++ + F G CL+ H + + I++T E+++L F+ NPG SR Sbjct: 123 RPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRT 182 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 LL ++ + TV+ I RLR K+ + ++T G GY Sbjct: 183 ELLDLVWGASYSGYE-HTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 12/230 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++ +D+P T L+ T EG+ V + G ++ +Q DL++LD+ +P +G Sbjct: 5 RRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGF 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + +R S V I+L+T R D +D++VG +GADDYVTKP +L ELV+RV +L R+ Sbjct: 65 AVCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +++ RF +N S T+ +LT E+++L ++PG +RE L Sbjct: 125 LPESR------TLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESL 178 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 L + D TV V IRRLR K+ + + T G GY Sbjct: 179 LARVWHGDA-PTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDP 227 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 289 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 10/233 (4%) Query: 1 MPHH-IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 MP + I+I +D+ + L SYF E +TV + G + ++ D+++LDI +P Sbjct: 1 MPANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + R R+ + + II ++ + D DR+VGL +GADDYV KP +REL+ RVK+ L R Sbjct: 61 DGFEVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 R+ + +Q Y ++ R + R I LT E+ +L + P + SR Sbjct: 121 ----RRGEVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSR 176 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 +LL RT+D IR LR KL D +VT +G GY Sbjct: 177 MQLLEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 11/232 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P ++I+ED+ +Q Y + GY+ + G E+ ++S D I+LDI LP NG Sbjct: 4 PIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNG 63 Query: 62 LMLTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + + +R E V II++TG+ + D I GL +GADDY+ KP + EL+ RVK +L R Sbjct: 64 WEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRT 123 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 L+ ++ + +F +++ + + + E +++ E E+ NP ++L+R+ Sbjct: 124 ILS-----ESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQ 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL----LVTQHGEGYFLAAD 228 +LL + D RTVDV I+R+R KL+ +VT G GY + Sbjct: 179 QLLDRVWGYEFNG-DPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFEEN 229 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 117/237 (49%), Gaps = 9/237 (3%) Query: 1 MPHH---IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLP 57 M H I++VED L + GY V A G + Q DL++LD LP Sbjct: 1 MAEHVPTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLP 60 Query: 58 DENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 +GL + R +R+ + ++++T RS+ D +VGLE+GADDY+TKP +REL+ RV+ LL Sbjct: 61 QLDGLEVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALL 120 Query: 118 WRIDLAR---QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPG 174 R + QA R+ L+ H + + + LT E+ +L + NPG Sbjct: 121 RRDQRIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPG 180 Query: 175 EILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAADV 229 SR LL + + D R+VD + RLR KL+ D + T G GY L A+ Sbjct: 181 RAFSRNYLLDTIWGQSYVGGD-RSVDNAMLRLRKKLADFGDAIETVWGLGYRLQAEA 236 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 9/232 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++VED+ V L F + G+ V+ + G E+ + DLI+LD+ LP +G Sbjct: 3 TILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFS 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + RA+ + +TV I+L+T D RI GLE+GA DYV KP + EL+ RV+ +L + Sbjct: 63 VCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 RQ N L+ + + I+L+ E+++L + N G LSR+ LL Sbjct: 123 RQTP---SSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLL 179 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 + + RT+DV +R LR KL D L+ T G GY Sbjct: 180 ERVWGSDFLGSN-RTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPAT 230 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 125/239 (52%), Gaps = 15/239 (6%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM--QNQSVDLILLDINLPDE 59 ++++ED+P + Y Y V + E + +S+DL++LD+ LPD Sbjct: 8 TKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDM 67 Query: 60 NGLMLTRALRERST-----VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVK 114 +G+ + + +R+ II++T + D DR++GLEMGADDYV+KP E REL+ R++ Sbjct: 68 DGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIR 127 Query: 115 NLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPG 174 ++ R DL Q +++ F + H + D EP++LT ++++L F T+ G Sbjct: 128 AVMRRHDLPLHQQ---KEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSG 184 Query: 175 EILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 ++LSRE+L + + R +DV I RLR + + ++T G GY A D Sbjct: 185 KVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 243 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 289 bits (740), Expect = 6e-77, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 115/231 (49%), Gaps = 9/231 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P I++V+DE + + GY V +G + +++ DL +LDI +P NG Sbjct: 5 PSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNG 64 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L R LR R+ ++ ++ R +D++VGLE+GADDY+ KP +REL+ RV+ LL R Sbjct: 65 YELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQ 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + G L+ +RH E I LT E+E+L A + G++ SRE Sbjct: 125 MDAEP---MAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASRED 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAA 227 LLR + +TVD I+RLR KL ++ T G GY A Sbjct: 182 LLREAWGWEYIT-ETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 289 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 12/233 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P ++IV+DE A ++ + EGY V G ++++ VD +LLD+ +P +G Sbjct: 4 PTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R +RE V ++ +T R + D+I GL +GADD++ K E+V R+K +L R Sbjct: 64 YDVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYR 123 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A F ++V H + DG+P++LT E+E+L F +P ++ +RE+ Sbjct: 124 RGEPAPRA----VLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQ 179 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L + L E D TV V I RLR K+ D +VT G GY + Sbjct: 180 LFQRLWG---EFGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEA 229 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 289 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED+P + Y EG+ + G + + D ILLD+ LP + Sbjct: 1 MAKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGID 60 Query: 61 GLMLTRALRER---STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + R +++ S +++VT + + DR+VGLEMGADDY+ KP +E+V RVK +L Sbjct: 61 GLTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R + ++ +++ RH +G P LT E+++LVA + G +L Sbjct: 121 RRRETQQRLT-----ERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVL 175 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS--ADLLVTQHGEGYFLAAD 228 RE LL + E D RTVDV IRRLR K+ A + T GY + Sbjct: 176 DRETLLNTVWGDDYEGTD-RTVDVHIRRLRKKMGESAAWVETVKQIGYRFREE 227 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 289 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 13/226 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+D+ L +EGY + + G Q D++LLD+ LP NGL Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R +STV I+++T + D ID + GLE GADDYVTKP + ELV RV+ L R + Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG 136 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 Q ++V H + RDG PI LT E+++LVA P ++ +RE LL Sbjct: 137 -------QAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLL 189 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYF 224 + R D R V+V ++RLR K+ D +++T G GY Sbjct: 190 EQVWGYR-HAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 289 bits (740), Expect = 8e-77, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DE + +EGY V G + ++ +++LD+ LP N Sbjct: 1 MNEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVIN 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + L E +GII++T + D +D+I+GLE+GADDY+TKP ++REL+ R+K+L+ R+ Sbjct: 61 GYDVCKRL-EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRRL 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D + +N + T+ ++ T E+++L ++N G + SRE Sbjct: 120 D--KTIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSRE 177 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS---ADLLVTQHGEGYF 224 ++L ++ RTVD I+R+R KL DL+ T +G GY Sbjct: 178 QILNIIWNMDYAGG-TRTVDTHIQRIRKKLGNNYQDLIQTVYGIGYK 223 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 8/228 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P +++V+DE + SY + G+ +G + + S D+++LD+ LP+ +G Sbjct: 40 PGRVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDG 99 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R +R S I+++T R D+I GL +GADDY+TKP +RELV RV +L R Sbjct: 100 LEVCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPR 159 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + P L+ H + ++LTR E+E+LVA PG++L+R Sbjct: 160 TS--TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHD 217 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYF 224 L+ + D R VDV I LR KL D + T G GY Sbjct: 218 LVTEVWDTTWVG-DERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 9/232 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++++IVEDE ++ Y +GY V ++G EI++NQ++ L ++DI +P +G+ Sbjct: 4 YNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGI 63 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + LRE +I++T +S+ +D+I+GL +GADDYVTKP EL+ RV + L R Sbjct: 64 TMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSK 123 Query: 123 ARQ--AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + N + G LN + DGE IK+T E+++L + NPG + S E Sbjct: 124 YLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAE 183 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + + N D TV V +R +R K+ D L G GY + Sbjct: 184 EIYEKVWNEEAINTD--TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIEK 233 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 5/230 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M H ++++EDEP L TQEGY +V GA + ++ DLI+LDI LP N Sbjct: 1 MSHKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLN 60 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G + LR+ II++T R+ + + GL+ GADDY+TKP + EL+ RV +L R Sbjct: 61 GFEILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 T + + ++ + +GE + L E+E+L+ V PG +++R Sbjct: 121 TQQDDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITR 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLA 226 + L+ ++ RTVDV + LR KL + + G GY L Sbjct: 181 DDLMNVVWGFDYIGG-QRTVDVHVSSLRKKLELGQSVQIESIRGVGYKLV 229 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 13/226 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++VEDE ++ EGYTV+V G + + DLILLD LP +GL + Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 65 TRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + LR+ S V IIL+T + D DR+ GL+ GADDY+ KP L EL+ RV+ L R Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNH-- 123 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + +F LN + + R I+LT E+++L +++P ++LSR+++L Sbjct: 124 -----EEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQIL 178 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD----LLVTQHGEGYFL 225 + D ++V +R LR KL A+ L+ T G GY L Sbjct: 179 ERVWGYDFMG-DSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 7/230 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+IVED+ + +EGY T GA E ++ L++LDI LP G Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +RE+ +++++ + + D+I+GL +GADDY+ KP + EL RVK L R Sbjct: 66 VLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLNF 125 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + R +NV + ++ + LT E+E+L F+ NP ++ ++ +L Sbjct: 126 SW-ETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLF 184 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 + + N D TV V IRRLR K+ D + T G GY L + Sbjct: 185 KSIWGENYIN-DENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 9/224 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++V+DEP + ++ Y E TV G +++ DL+LLD+ +P +G Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + +RE S V +I++T R DR+ GL MGADDY+ KP + REL RV+ +L R Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQV 127 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 +A R + + T G P+ LT E+++L +PG++ SRE+LL Sbjct: 128 EANVP-----IRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLD 182 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKL--SADLLVTQHGEGYFLA 226 + + D RTVD I+ LR KL A L++T G GY A Sbjct: 183 RIWGPDFQG-DARTVDAHIKNLRDKLGEGAGLILTVWGVGYRFA 225 >UniRef50_C5CP31 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=C5CP31_VARPS Length = 249 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 3/228 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP I++++D+ A L +YF + GYT+ + ++ D +LD+ LP+ + Sbjct: 18 MP-RILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGPFDAAILDVMLPEMD 76 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L R +R+ S + I+++T R + +DR+VGLE+GADDYV KP E RELV RV+ +L R Sbjct: 77 GFALCREIRKESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQ 136 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A F G +++ R + R GE ++LT E+E+L PG++ SR+ Sbjct: 137 RSTPAAANGNGTQHRVFDGLSIDLDRRQVLRHGERVELTGTEFELLALLAAEPGKVFSRD 196 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-DLLVTQHGEGYFLAA 227 +L L E R VD+++ RLR KL D + T GY LA Sbjct: 197 DILNRLRGHEAELY-TRAVDIVVSRLRKKLEPLDCIKTLRNAGYALAV 243 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 8/228 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+IV+D+ L Y ++ + V +R + +V+L++LD+ LP +GL L Sbjct: 35 ILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPGTDGLTL 94 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 +R +RERS + +I++T R+ DRI+GLE GADDY+ KP E RELV R+ +L R A+ Sbjct: 95 SREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQGAK 154 Query: 125 QAQPH-TQDNCYRFAGYCLNVSRHT-LERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + P+ + + F G+ L+ T + G + L+ AE+ +L F+ P + SR++L Sbjct: 155 EVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRLFSRDQL 214 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFL 225 + R ++ + R++D+L+ RLR KL+ D + T G GY Sbjct: 215 MEQARGRAMDAFE-RSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+++ED+ +A ++ T +G+ V SGA E+ D++L+D+ LPD +G Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R LR S V II+VT R+D D + GLE GADDYVTKP E++EL R++ LL R Sbjct: 79 ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRS-- 136 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ + + R+GE + LTR E+ +L + P + SRE+L Sbjct: 137 --RSAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQL 194 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 L + D R VDV +RRLR K+ D +LVT G GY + Sbjct: 195 LERVWGYDYFG-DGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 136/237 (57%), Gaps = 9/237 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP H+++V+D+ + L ++F + +TV++ +GA + ++ +++DL++LD+ L E+ Sbjct: 1 MP-HLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGED 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + +R S V +I++T +D DR+VGLE+GADDY+TKP + REL+ RVK +L R Sbjct: 60 GFSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRT 119 Query: 121 -DLARQAQPHTQDNCYRFAGYCLNVSRHTLER-DGEPIKLTRAEYEMLVAFVTNPGEILS 178 +L P FAG+ L+V+R L D I L+ E+++L+AF + +L+ Sbjct: 120 AELEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQRVLT 179 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAADVC 230 R++LL + D R++DV + RLRHKL D + T GY V Sbjct: 180 RDQLLDLARGLSHAAFD-RSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIFTPVVT 235 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 8/233 (3%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M + +++IVEDE ++ Y + + + +G +Q + D ++LD++LPD Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G+ + R +RE S V I++++ R D+++GL GADDY+TKP L ELV R+ L R Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D Q Q + +N + RD +PI L+ E+E+L N ++ S+ Sbjct: 121 QDRWLQ-DHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSK 179 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 +LL + D T+ V IRR+R K+ + L T G GY + Sbjct: 180 SQLLDAVWGYDTYG-DENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFST 231 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 7/231 (3%) Query: 1 MPHH-IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M H I++++D+ L Y EGY + SG E +++ DL+LLD+ +P Sbjct: 1 MSTHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + +RE S V ++++T + + DRI+GLE+GADDY+ KP REL+ R+K LL R Sbjct: 61 DGFETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 I+L + Q + G LN + + DGE I +T +E+++L ++ G+ + + Sbjct: 121 IELDK-NQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPK 179 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFLA 226 E L + R + D R++D+ + +R KL + T G GY Sbjct: 180 EDLYLEVLGREIMAYD-RSIDMHVSNVRRKLGGTTEQSKIQTIRGIGYMFV 229 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 120/239 (50%), Gaps = 21/239 (8%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM----------QNQSVDLILLD 53 +I+++EDE + + + +EGY V + G ++ + V LI+LD Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 54 INLPDENGLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVR 112 + LP NGL L R +R + TV I++++ + IDR+VGLE+GADDY+ KP +RE++ R Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 113 VKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTN 172 + LL R + + P RF CL GE + L+ EY++L F+ + Sbjct: 143 CRALLRRTRIQQATLP----PVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRH 198 Query: 173 PGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 P + RE+LL + D +TVDV IR LR K+ D ++T G GY Sbjct: 199 PRRVWPREQLLDQVWGPDFVG-DSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRFG 256 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +++V+DE ++ + + GY V +G + ++ + DL++LD+ LP G+ Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGM 69 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L + ++E+ ++ II+VT +S + ++GLE+GADDYV KP REL+ RV+++L R Sbjct: 70 DLCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKE 129 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + + LN+ H + + LT EY++L F+TNPG +R++L Sbjct: 130 GEEEEQFEGN--ITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDKL 187 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFL 225 L + + + D R VDV I+RLR KL + L T G GY Sbjct: 188 LDRVWGKDIYVTD-RAVDVNIKRLRDKLGDEKERLETIRGIGYRF 231 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 119/233 (51%), Gaps = 8/233 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P I+IVED+ L + E Y V +A GA +++ + D ++LD+ LP +G Sbjct: 4 PKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDG 63 Query: 62 LMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L + R R + II+ + RS + RI+GLE+GADDY+ KP + ELV RVK LL R+ Sbjct: 64 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D + AG ++ DG + LT E+++L F +PG++ SR Sbjct: 124 DALAR-DSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 LL + + E + TV+ I RLR K+ AD ++T G GY LAA Sbjct: 183 DLLNAVWGYQHEGYE-HTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAP 234 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 10/230 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGY-TVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++I++DE +++ +EG V ++ ++ DL++LDI LPD G Sbjct: 39 KVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGY 98 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + +R+ S V II ++ + + D+IVGL +G DDY+TKP +E+ RVK L R+ Sbjct: 99 DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 158 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 QP + + LN + L ++ I+LT E ++ F+ +P ++S+E L Sbjct: 159 L---QPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETL 215 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 + + D TV V IRRLR K+ D LVT G GY Sbjct: 216 YQAVWGEDFFGSD-NTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFVV 264 >UniRef50_C7LZ74 Two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZ74_ACIFD Length = 225 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 124/230 (53%), Gaps = 9/230 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPD-E 59 M H+++VED+P L YF +E V V ++G + SV L++LD+NLP Sbjct: 1 MGRHVLVVEDDPAIADLLCVYFAKEEGEVRVVSNGEDALSAF-DASVTLVILDLNLPGRL 59 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +GL + RA+R RSTV II+++ R + +DR+ GLE+GADDYVTKP REL+ RV+ + R Sbjct: 60 DGLEVARAIRHRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERR 119 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 ++ + F G + + RDG P+ LT E+++L F +P L+R Sbjct: 120 VEANPSSAAA-----LSFNGVDWDPRARQVLRDGVPVALTNREFDLLGYFFAHPATALTR 174 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-LVTQHGEGYFLAAD 228 LL + D RTVDV + +LR KL + + T G GY + Sbjct: 175 RELLDGVWGPEWYG-DDRTVDVHVLQLRKKLGGAIAISTVWGVGYRFDPE 223 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 14/235 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+DEP + L+ Y V ++ ++ DLILLD LP +G+ Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 63 MLTRALRE---RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 L R L+ S + II++T + + +++ GLE+GADDY+TKP RELV R+K +L R Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D ++P + G CL+ H + P+++ EY +L F+T+ + +R Sbjct: 124 TDSMGISEP------IQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTR 177 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS----ADLLVTQHGEGYFLAADVC 230 +LL + V + RTVDV IRRLR LS + T G GY + V Sbjct: 178 NQLLDHVWGGNVY-VEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRFSNKVA 231 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 6/229 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+I++DE ++ Y ++G+ V +G+ E+ + + DLI+LD+ LPD NG Sbjct: 3 SEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L + LR+ + I+ ++ + +D+I+GL +G DDY+TKP ELV R+ L R Sbjct: 63 LELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNR 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + AG ++ + +TL D +P+ LT E+E+L +P + S + Sbjct: 123 ILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQ 182 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 L + D RTV V I LR K+ D L+VT G GY L Sbjct: 183 LYDHIWGVDNIG-DTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++I+IV+DE + L+ EGY V G +I++ + V L++LD+ +PD + Sbjct: 1 MNNNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + +RER + I++++ + + ID+I G+ GADDYV KP EL VR++ L R Sbjct: 61 GFEVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRT 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + D+ R ++ +H + + LT E+E+L TN G + S E Sbjct: 121 YFLN-TKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAE 179 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAA 227 + + + TV V + RLR KL ++ T G GY + Sbjct: 180 EIFEKVWKEKYY-QSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIEK 230 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 11/228 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+++ED+ ++ Y +E + V A G + L+L+D+ LP +G L Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 +R S V II+V+ + D++ +GADDYVTKP EL RVK + R + + Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 Q ++ +F +++ + GE I LT E+E+L+ +PG + ++E L Sbjct: 123 PQQ----EDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYA 178 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAA 227 + D RTV V ++ +RHKL + T G GY Sbjct: 179 AVWNGD--GFDSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIG 224 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 128/230 (55%), Gaps = 10/230 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++EDE L+ YF QE + V+ T +G + + DLI+LD+ LP + Sbjct: 1 MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60 Query: 61 GLMLTRALRE---RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + R+L++ + + ++++T +SD DRIVGLE+GADDY+ KP +EL+ R+K +L Sbjct: 61 GLSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R + +P + + AG L+++RH + LT E+ +L+A V N G +L Sbjct: 121 RRT----EQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVL 176 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFL 225 R+ LL ++ E D RTVDV IRRLR KL D + T GY Sbjct: 177 DRQMLLDLVWGADYEGTD-RTVDVHIRRLRKKLGDYQDRVQTVKQIGYKF 225 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 137/235 (58%), Gaps = 9/235 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H+++V+D+P + L Y + V+V A G + + +++ ++DL++LD+ +P E+G+ Sbjct: 7 PHVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGV 66 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R LR RS + I +V+G+ D DR++ LE+GADDY+TKP REL+ RV+ LL R Sbjct: 67 QIARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGA 126 Query: 123 ARQAQPHTQD-NCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A +D YRF+G+ LNV L G P++LT E+ +L AF+ PG +LSR+ Sbjct: 127 TAPATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRVLSRD 186 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 +LL +R ++ R++DV I RLR K+ D + T G GY L V Sbjct: 187 QLLES--SRLYDDVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVLDVPVT 239 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 15/236 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + +VED+ ++ + G+ V +G G+ + +L LLDI +P + Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 61 GLMLTRALRERSTV---GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + R +R ++ +I +T ++ D+I GL++GADDY+ KP REL+ R+K +L Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R + ++ TL G + T E+ +L +PG + Sbjct: 121 RRFERP------LPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVF 174 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +R++LL + R R+VDV +RR+R K+ + L T G GY Sbjct: 175 TRDQLLDAVW-RETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEVP 229 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 14/233 (6%) Query: 1 MPHH---IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLP 57 M H ++I+ED+P +Q Y + GY V G E D I LDI LP Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 58 DENGLMLTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNL 116 +G L + +R + + II++TG+ + D+I GL++GADDYV KP + ELV R+K + Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120 Query: 117 LWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 + R DL +D G ++ + + I + E ++L + P ++ Sbjct: 121 MRRADLLND-----EDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQV 175 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKL-SAD---LLVTQHGEGYFL 225 +R++LL + E D RT+DV I+R+R KL AD + T G GY Sbjct: 176 FTRQQLLDQIWGYAFEG-DPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKF 227 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 125/230 (54%), Gaps = 9/230 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++ +D+ ++ YF EGY V+ +G E+M D+++LD+ +P+ +G Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + +R +S+V +I++T + D IDRI+GLEMGADDY++KP REL+ R+K +L R Sbjct: 63 TLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQE 122 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 R+ P +G L T+ +GE ++LT +EY +L + PG++L+++ L Sbjct: 123 REDDPTAD---IDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELS 179 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAAD 228 R++ D R++D+ I LR K+ + T G GY ++ Sbjct: 180 EKALGRKLTMYD-RSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSN 228 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 285 bits (732), Expect = 5e-76, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 13/231 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P ++I++D+ A L Y + G+TV A ++ DL++LD+ LPD +G Sbjct: 15 PTRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDG 74 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R +R S + II++T R D DRIVGLEMGADDY+ KP E RELV R++ +L R Sbjct: 75 LAVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR-- 132 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R +N + ++ ++LT AE+E+L N G ++SR+R Sbjct: 133 -----GTRDDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDR 187 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 +L + D R++D+L+ RLR KL D + T G GY Sbjct: 188 ILDGTRGIDWDAYD-RSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIG 237 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 11/226 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+D+ + ++ Y + GY V + G + + DL++LD+ LP GL Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LRER V ++++T + DR+VGLE GADDYV KP RELV+RV ++L R + Sbjct: 70 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 129 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + A + L++ DG + LT E+++LV + +PG SR LL Sbjct: 130 QPA----EGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELL 185 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYF 224 + D TV V +RRLR K+ D + T G GY Sbjct: 186 EQVWGWSF--GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYR 229 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 7/230 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+DEP L+ QE + V GA + Q D I+LD+ LP +G+ Sbjct: 2 KTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGI 61 Query: 63 MLTRALRE-RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 +T+ +RE + I+++T + + D+IVGLE+GADDYVTKP RE++ R++ + R Sbjct: 62 AVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTT 121 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + ++ + ++ + LT E+E+LV F+ ++ SRE+ Sbjct: 122 QPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREK 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 LL + + R VD+ + LR K+ + L T G GY L Sbjct: 182 LLNAVWGFDY-PAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLE 230 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 6/231 (2%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 ++I +DE L Y ++G+ + +G +I+ N VD+ ++DI +P +G Sbjct: 3 RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGYH 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R +RE + +I+++ +S+ D+I+GL++GADDY+TKP E++ RVK L R + + Sbjct: 63 LVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNKS 122 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + LN++ TL ++ + LT EY++L + N G++ +++++ Sbjct: 123 MSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQIF 182 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 + D + V I LR K+ D + T G GY L +++ Sbjct: 183 EYVWEEPFYG-DDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSNI 232 >UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridium perfringens RepID=Q0TNL1_CLOP1 Length = 232 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 4/230 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I+EDEP Q L+ F +EG+ V G +I + + L++LD+ LPD + Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDIS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + R L + II++T R D +D+++GLE+GADDY+TKP ++RE V RVK L R Sbjct: 61 GFDVCREL-NKLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRK 119 Query: 121 DL-ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D +++ T + + + + + E I+L E E+L+ F+ NP LSR Sbjct: 120 DKFLKESNKSTVKDEFIIGSIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSR 179 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKL-SADLLVTQHGEGYFLAAD 228 +++L + D RTVDV +RRLR KL + +++ T G GY + Sbjct: 180 DQILDGVWGDEYFG-DFRTVDVHVRRLRQKLNNEEIIETIFGLGYMFKGE 228 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 1 MP-HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M I++VED+ ++ Y +EG+ VS G E DL+LLD+ LP Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + + +RE S II++T + D +++ GL +GADDYVTKP E+ EL+ R+ +L R Sbjct: 61 DGYQVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 I+ + + N + ++ + + + I + R E ++L + P ++ R Sbjct: 121 IEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKR 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 E L+ + E D R +D+ I+RLR +L + + T G GY + Sbjct: 181 EELIEGIWGWDFEGED-RVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVE 233 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 113/230 (49%), Gaps = 9/230 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + ++I+EDE L++Y +EGY V + G E+ + Q+ D+++LD+ LP+ +G Sbjct: 8 YTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGE 67 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R+ I+++T + ++I GL +GADDYV KP RE++ R+K +L R+ Sbjct: 68 EIARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVG- 126 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + Q ++ + G I LT+ E+++L P ++ SRE L Sbjct: 127 --KEPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENL 184 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + E D RT+D I+ LR K+ + + T G GY Sbjct: 185 ADRIYGYLWEG-DSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQFGK 233 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 285 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 12/228 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +I IVED L+ Y Q + V G L M+++ DLILLD+ LP +G+ Sbjct: 11 KNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGADGV 70 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L R +R S V II+VT + + IDR++GLE+GADDYV KP RE+V RVK +L R Sbjct: 71 TLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRR--- 127 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + L H++ G+ +K+T++E+ +L AF+ +PG++ SR+ L Sbjct: 128 ---GGEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRDEL 184 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFL 225 + + R E D R +D I+ LR KL + + + +G GY Sbjct: 185 IAKIQGRTYEGYD-RNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKF 231 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 129/238 (54%), Gaps = 12/238 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN--QSVDLILLDINLPD 58 M +++V+D+ T+ L++Y + Y V V GA + + L++LD+ LPD Sbjct: 10 MTRTLLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPD 69 Query: 59 ENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 +G L R++R +S V II++T +D DRIVGLE+GADDY+ KP REL+ R+K + Sbjct: 70 TDGFTLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHR 129 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R+ L P +FAG+ +++ L G+P+ LT ++ +L F + GE L Sbjct: 130 RMQLGAPGAPV---RFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAGETL 186 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 R RL+ R + P R++DV + RLR +L D L+ T G GY +ADV Sbjct: 187 DRARLMEQTRGRDL-GPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVFSADVS 243 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 96/235 (40%), Positives = 138/235 (58%), Gaps = 9/235 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P HI++V+DEP + L Y +G+ +S S AG R ++ N+ D+ L+DI +P E+G Sbjct: 10 PVHILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDG 69 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L LTR L E + +IL+T R + DRI+GLE+GADDYVTKP E RELV R++++L R Sbjct: 70 LSLTRHLIETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRAG 129 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R +D Y F G+ L+ + L DG + ++ AE+ ML AF+ +P ++L R+ Sbjct: 130 --RAPAVDAEDAFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVLDRD 187 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 RLL ++ R D R VD + RLR K+ AD + T G GY AADV Sbjct: 188 RLLDLVQGREAHLFD-RAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRFAADVA 241 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 13/229 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+D+ + +G+ A G E+ ++ DL+LLD+ LP + Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R +R S V I+++T +SD D + GLE GADDYV KP + ELV RV+ L Sbjct: 90 GIEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR-- 147 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R A ++V+ H + R GE I LT E+++LVA P ++ +RE Sbjct: 148 -----PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRE 202 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYF 224 LL + R D R V+V ++RLR K+ D ++T G GY Sbjct: 203 LLLEQVWGYR-HAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 12/231 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED+P L+ EG+ V G + + S D+ILLD+ LP + Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + + +RE S V II++T + + D++VG + GADDY+TKP EL+ R+K LL R Sbjct: 61 GMEVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRT 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERD-GE-PIKLTRAEYEMLVAFVTNPGEILS 178 + + F +N S + + RD G+ I+L++ E+E+L V N G +LS Sbjct: 121 K-----KSVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLS 175 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFL 225 R+++L + D +D+ I+ LR K+ + T G G+ Sbjct: 176 RDKILEEVWGFDYIGND-NILDLYIKYLRDKIDRPYERKFIQTVRGIGFIF 225 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 11/229 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H+V++EDE L+ T EG V+V + G +I++ Q DL++LD+ LPD +G++ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 64 LTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R LR S + II++T R + +R+ GL++GADDY+ KP EL+ RV + R + Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +R + AG LN+ + G I+LT E+ +L F+ +P + +R+ L Sbjct: 138 SRPVT------VLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTL 191 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA---DLLVTQHGEGYFLAAD 228 L + D V+V I LR K+ L+ T +G GY L D Sbjct: 192 LSRVWGFTYVG-DSNIVEVHISNLREKIGDHERKLIRTVYGVGYTLRPD 239 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 14/230 (6%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 ++VED+ ++ E + V V G E+ + +LI+LD+ LP +G + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 66 RALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R LR + II++T +++ D+++GL++GADDY+TKP RE + RV LL R Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 Q D+ F + + + + + LT E+E+L+ N G L RE+L Sbjct: 129 YNQP-----DDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQL 183 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAA 227 L + RT+D I+RLR K+ + T G GY L Sbjct: 184 LEQVWGYEYPG-STRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEV 232 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 118/234 (50%), Gaps = 11/234 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+IVEDEP L Y Y ++ + G + ++ DLILLD+ LP +G Sbjct: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L R +R S + I++VT + + IDR++GLE+GADDY+ KP RE+V RVK +L R Sbjct: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R+ Q ++ ++ R G+ + LT AE+ +L PG++ SRE+ Sbjct: 130 PQRELQQQDAES-----PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAADVC 230 LL L RT+D I+ LR KL + + +G GY AD C Sbjct: 185 LLNHLY-DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 6/230 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP I+IVEDE Q L + T+EG+ G ++ + +DL ++D+ +P + Sbjct: 1 MP-TILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMD 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + LRE ST+ +I +T RSD DRI GL +G DDY++KP EL+ R++ +L R Sbjct: 60 GFDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRT 119 Query: 121 DLARQA--QPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + + G LN +++ D PI LT E+++L+ + G++ + Sbjct: 120 YQRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFT 179 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLA 226 RE LL + E + RTVD I+ LR KL +++ T G GY L Sbjct: 180 REHLLTSVWGLDYEGTE-RTVDTHIKTLRMKLKPYGNVIQTVWGIGYKLV 228 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 13/231 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IV+DE + + GY + ++ ++ DLILLD LP +G+ Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 63 MLTRALRERS---TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 L R L+ + II++T + + ++I GLE+GADDY+TKP RELV R+K +L R Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 P G L+ H + DG+P ++ EY +L F+T+ +R Sbjct: 124 TGPGDSEAP------IEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTR 177 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS---ADLLVTQHGEGYFLAA 227 +LL + V + RTVDV IRRLR L +L+ T G GY + Sbjct: 178 GQLLDQVWGGNVY-VEERTVDVHIRRLRKALGEVYENLVQTVRGTGYRFST 227 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 11/237 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + IVEDEP+ L++Y + GY V +G ++ + D ++LD+ LPD Sbjct: 1 MAITVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMP 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R S V I++++ +S DRI G+ +GADDYVTKP RE++VR++ +L R Sbjct: 61 GEEICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRT 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + + + ++ + + + E I LT E+ ++ +PG + SR Sbjct: 121 RTLNKMEIFS----FNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRA 176 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA--DVC 230 LL+ + R++DV I+ LR KL ++T G GY DV Sbjct: 177 DLLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGGKRDVS 233 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 124/236 (52%), Gaps = 10/236 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 H I+IVEDE + + LQ F E Y V G + LILLD+ LP ++G Sbjct: 3 QHRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKSG 62 Query: 62 LMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + R +R++ II++T +++ ++ GL+MGADDYVTKP + EL+ RVK L RI Sbjct: 63 FEVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRRI 122 Query: 121 DLARQAQPHTQ---DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 DL QA P Q + FA L+ + + G P++L+ E+++L F GE++ Sbjct: 123 DLQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEVV 182 Query: 178 SRERLLRMLSARRVEN-PDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 RE LL+ L EN P RT+D I LR KL D ++++ G GY A Sbjct: 183 LREDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFDA 238 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 12/230 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+D+ L+ + + + V ++ E Q +VD ++LDI +P ENG Sbjct: 4 KTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGF 63 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R +R +S V I+ ++ RS +D+I GL +G DDY+ K E+V RVK +L R Sbjct: 64 AFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRS-- 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + F LN++ L DG+ + LT EYE+L F+ +P + S ++L Sbjct: 122 --ASNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQL 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 L L D TV V + RLR K+ A+ +V G GY Sbjct: 180 LDKLWD---GVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P I IVEDE LQ EG+ + +G E + + DL+LLD+ LP +G Sbjct: 4 PVRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + + +RE S++ II++T + + D++ GL++GADDY+TKP + EL+ R++N L + Sbjct: 64 MTICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHV 123 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 P + + + R+ +E DGE + LT+ EY +L + N +L+R++ Sbjct: 124 PDNGGVPL--EERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQ 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA----DLLVTQHGEGY 223 +L + D VDV IR LR KL + T G GY Sbjct: 182 ILEKVWGYDYSG-DTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGY 226 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 283 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 14/239 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+IVED+ + Y G VSV +G+ E +QN+ DL++LD+ LP E+GL Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R +R I+++T R+D +D+++GLEMGADDY+ KP+ R L+ R++ LL R+ Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 124 RQAQPHTQ--------DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 +A + F ++ S + + I LT AE+++L ++ G Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLASSAGR 206 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAADV 229 +LSRE + L + D R++DV + R+R K+ D + T +GY + Sbjct: 207 VLSREEIFTALRGIEYDGQD-RSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFVKEA 264 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 283 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 139/235 (59%), Gaps = 10/235 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI+IV+D+ + L SY + G S+ A+G +R +++ SVDLI+LD+ LP E+GL Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 64 LTRALR--ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L R LR + T+ ++++T R++ DRI+GLEMGADDY++KP +REL R++++L R Sbjct: 66 LCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR 125 Query: 122 L-ARQAQPHTQDNCYRFAGYCLN-VSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + Q F + L+ +RH L+ G + L+ AEY +L F+ +P +L+R Sbjct: 126 MLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVLTR 185 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 ++LL + R + D R++D+LI RLR +L D + T EGY +A V Sbjct: 186 DQLLNLTQGRDADPFD-RSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAAV 239 >UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphaproteobacteria RepID=Q0BQV4_GRABC Length = 253 Score = 283 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 130/231 (56%), Gaps = 8/231 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++VED+P + + + G+ S G + ++ DLIL+D+ LP +G L Sbjct: 22 ILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPGGSGFDL 81 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 +ALR+ S V II+V+ R + +DR++GLE+GADDY+ KP +EL+ RV+ +L R Sbjct: 82 CKALRQSSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRR-GPVN 140 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + FAG+ +++ R L G + L+ AEY++L++F+ N ++ R+RLL Sbjct: 141 EPTAKGKSETISFAGWQIDMKRRELTDPSGAVVDLSGAEYDLLLSFLENAQRVIGRDRLL 200 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 + R + D R++DVL+ RLR K+ L+ T G GY AADV Sbjct: 201 ELSRTRLGDVSD-RSIDVLVSRLRRKIGNRVGERPLIRTIRGVGYMFAADV 250 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 8/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I++DE L+ ++G TV +G E + + DLI+LDI +PD + Sbjct: 1 MS-KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDID 58 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + R +R+ I+ ++ + +DRI G +G DDYV KP L+EL+ R+ L R Sbjct: 59 GYEVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRRE 118 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A + F +++ + G PI LT+ E+++L +PG++ S+E Sbjct: 119 KRAILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 ++ + E D TV I+ +R K+ + + T G GY Sbjct: 179 QIYEKVWGFDAEG-DTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEK 229 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 127/232 (54%), Gaps = 8/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M HI+IVEDE + L Y + GY ++ G + ++NQ DLILLD+ LP ++ Sbjct: 1 MS-HILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKD 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R ++E S + II+VT R D IDR++GLE+GADDY+ KP RE+V RVK +L RI Sbjct: 60 GLTICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRI 119 Query: 121 DLARQAQPHTQ-DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + +T + LN + + P++LT E+ +L + PG I SR Sbjct: 120 NPPLTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSR 179 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLA 226 +L+ + + RT+D I++LR KL+A +L+ + + GY L Sbjct: 180 SQLIDRVY-QDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKLV 230 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 283 bits (725), Expect = 3e-75, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 10/227 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 HI+IVEDE LQ EGY+V++ +G + L+LLD+ LP +G Sbjct: 3 KGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSG 62 Query: 62 LMLTRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L + R LR+ S +IL+T R D++ GL++GA+DYVTKP E+ EL+ R++ L Sbjct: 63 LEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR-- 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + +N + R + ++LT E+++LV + +P ++L+RE Sbjct: 121 --QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTRE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGY 223 ++L + D VDV IR +R KL L+ T G GY Sbjct: 179 QILSSVWGFDYIG-DTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGY 224 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 9/234 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++ +D + L+ T EGY V G + ++ + S+DLI+LDI +P+ N Sbjct: 1 MQTRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLF-DSSIDLIVLDIMMPNMN 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G LRE S V I+ +T + D+ +G GADDY+ KP EL RVK LL R Sbjct: 60 GYQTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRY 119 Query: 121 DLARQAQPHT---QDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 + + + T + G L ++ E +G+ ++LT E+ +L + NP +I Sbjct: 120 QVYKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIF 179 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 S E+L T+ V IR LR K+ D + T G+GY Sbjct: 180 SAEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 90/235 (38%), Positives = 135/235 (57%), Gaps = 8/235 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P ++IV+D+P +A L Y G G +R M Q DL++LD++LP ENG Sbjct: 26 PIRLLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGENG 85 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L R +RE S + +I++T R++ DR+VGLE+GADDYVTKP E+RELV R+ +L R Sbjct: 86 LTLCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSR 145 Query: 122 LA-RQAQPHTQDNCYRFAGYCLNVS-RHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 R+ P + RFA + LN + R ++ + + L+ AE+ +L+ F+ +P +L R Sbjct: 146 ADVRRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRVLDR 205 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 E L+ R ++ D R++D+L+ RLR KL D L+ T GEGY V Sbjct: 206 EMLINTARGRDLDVFD-RSIDLLVSRLRQKLRDDPRDSALIRTVRGEGYVFTGTV 259 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 11/227 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM-QNQSVDLILLDINLPDENGL 62 +++V+DE + ++ + ++ Y V +G +I + + + LI+LD+ +P +G Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + +R+ S V II++T +SD D ++G E+G D+Y++KP + LV RV+ ++ R Sbjct: 65 QVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRS-- 122 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 T D G ++ + H ++ D I+L+ E+E+L F+TN G LSRE++ Sbjct: 123 -----IQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKI 177 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAA 227 L + D RT+D +++LR K+ D + T G GY Sbjct: 178 LNNVWNYDYFG-DARTIDTHVKKLRSKMGDKGDYIKTIWGMGYKFEV 223 >UniRef50_C1SP47 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP47_9BACT Length = 234 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M H+I+IV+D+ L Y Y+V V + L + +++ +I+LDI +P N Sbjct: 1 MSHNILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLMLEKYLKSSKPSVIILDIMMPHIN 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + LR+ S + +I+++ R + DRI GLE GADDY+ KP E REL+ R+ ++ R Sbjct: 61 GFDLCKKLRKNSDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKRF 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + Y++ ++ ++ DG ++LT+ E+ +L V NP +LSR+ Sbjct: 121 EHSEDT--ANNAAVYQYGELSIDTDKYKATMDGSNLELTKTEFIILSLMVRNPYILLSRD 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 RL L+ + + RTVD+ + RLR KL+ D + T GEGY AD Sbjct: 179 RLYNELTGFDCDAYN-RTVDISVSRLRTKLNDDPKSPKYIKTVWGEGYMFIAD 230 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+IV+DE L+ ++GY V+ SG EI+ + DL++LD+ LP +G Sbjct: 3 KEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDG 62 Query: 62 LMLTRALRERSTV---GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 L + RA+R + I++++ + + D I GLE+GADDY+TKP + L+ R++++L Sbjct: 63 LEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLR 122 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R +A P +G ++ +HT+E +G+ I LT +E+++L + PG + + Sbjct: 123 RQQ--AKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFT 180 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFL 225 R +++ + D R+VDVLI LR KL + + T G GY Sbjct: 181 RWQIVDKIRGEHYAVTD-RSVDVLISGLRKKLEDYGEYIETVRGVGYRF 228 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++VEDEP ++ Y ++G+ V + G + + +LDI LP G + Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 65 TRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R LRE +I +T R D +DRIVGLE+GADDYVTKP RELV RV+ +L R+ Sbjct: 71 CRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVAGP 130 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 +P G L+ R T+ G+P++LT E+++L + PG + +RE LL Sbjct: 131 PPGRPRI------VGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELL 184 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-LLVTQHGEGYFLAA 227 + V RTVDV + ++R KL + ++ T G GY + A Sbjct: 185 AGVWGYAVPAG-TRTVDVHVAQVRAKLGPESVIRTHRGVGYAVDA 228 >UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I3L5_9CLOT Length = 227 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 9/230 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++IVED+ L EGY S + + DLILLD+NLPD + Sbjct: 1 MNTQVLIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNLPDGS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + + T+ II++T ++D D+++GLE+GADDY+TKP ++E+ R+K + RI Sbjct: 61 GFDFCKDINAKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRI 120 Query: 121 DLARQAQPHTQDNCYRFA-GYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + ++ N + +N + T+ ++ E I+L EYE+L FV N ++ SR Sbjct: 121 E---KSASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSR 177 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD----LLVTQHGEGYFL 225 E+L+ + + D+RTVD+ IRR+R KL + ++ T G GY + Sbjct: 178 EQLIDNIWEFSYDG-DIRTVDIHIRRIRSKLDTNGHPSVIETVFGVGYMM 226 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 8/231 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGL-REIMQNQSVDLILLDINLPDENG 61 I++V+D+P Q L Y ++G+ V V SGA + + + VDL++LDI LP E+G Sbjct: 15 PRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDG 74 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R L ++ +I+++ R + IDRIVGLE+GADDYV KP REL+ R++ +L R Sbjct: 75 LSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + A+ QD R + ++ + LT E+++L F+ P +++R++ Sbjct: 135 MEPDARGK-QDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRDQ 193 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 ++ L D R++DV I RLR K+ + LVT GEGY A Sbjct: 194 IMDYLKGYERSAFD-RSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAP 243 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 ++VED+ + Y T+EG+ + G + Q S DL+LLDI LP NG+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 66 RALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQ 125 + +RE+S + +++++ + +D+ +GL GADDY+ KP + EL RVK + R Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSA 120 Query: 126 AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRM 185 +P R +++ ++ ++GEP++LT E+++L F +NP ++ ++E++ R Sbjct: 121 EEPAVN-KVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRS 179 Query: 186 LSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 + + D ++V +RRLR K+ D + T G GY L Sbjct: 180 VWNEEYFD-DQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLG 224 >UniRef50_C1IA20 Two-component system response regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IA20_9CLOT Length = 233 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 3/226 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I+ED+ L+ +EGY V V +G +++ ++N + DLILLDI L D + Sbjct: 1 MRESILIIEDDRDISEILRFALIKEGYKVKVNPNGLEVKDEIKNFNPDLILLDIMLNDTD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + R + + II++ R D +D+I+GLE+GADDY+TKP ++RE++ RV+ + R Sbjct: 61 GFSVCRNI-SGYNIPIIMLIARVDIMDKILGLELGADDYITKPFDIREVITRVRVAIRRR 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + ++ + +N + ++ + E I+L E+E+L N ++ SR Sbjct: 120 EEMKKLITSKEQEEILVDNIVINEACRSVHVNNEEIQLKPKEFELLTFLCKNTNKVHSRN 179 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-LVTQHGEGYFL 225 +LL ++ D RTVDV I RLR KL + + T G GY L Sbjct: 180 QLLDLIWGYDFLG-DTRTVDVHITRLRKKLKDNFNIETIFGVGYML 224 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 17/232 (7%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H+++VEDE ++ Y G+ VS+ G E + +L++LD+ +P +GL Sbjct: 2 KHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDGL 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +RE+S + II+VT R++ IDR++GL MGADDYV KP +ELV RV+ +L R+D Sbjct: 62 TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLD- 120 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R+A+P D + ++ ++ + + + LT E+ +L F+ + G++ SR +L Sbjct: 121 -RKAEPEQNDL------FRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQL 173 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA--------DLLVTQHGEGYFLA 226 L ++ + D R +D I+ LR K+S + + +G GY Sbjct: 174 LDHINPDSFDVAD-RVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFE 224 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI++VEDE L Y + G+ + SG G+ E ++ ++ DLILLDI LP +NGL Sbjct: 7 HILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLE 66 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R STV I +VT + IDR++GLE+GADDY+ KP RE+V R+K L R+ Sbjct: 67 VCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQI 126 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 +P G+ ++ ++ + + + LT EY +L V+NPG + SR +LL Sbjct: 127 GVPEPTRT-------GFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLL 179 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKL------SADLLVTQHGEGYFLAA 227 + + D R +D I+ LR K+ +++ +G GY Sbjct: 180 DLCYQQEQLIID-RVIDSHIKNLRKKISTALPPGQEVIHAVYGIGYRFEV 228 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++++D+ + + + EG+ V G ++ +L ++DI +P +NG+ L Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R LR+ S++ +I++T R + +DRI+GLE+GADDY+ KP REL R++ +L R D + Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQQ 122 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 ++ + RF + T+ GEP+ LT EY +L + + GE++S+ L + Sbjct: 123 ESDDKQET---RFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELSQ 179 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAAD 228 +R P RT+DV I LR K+SA + T G+ + Sbjct: 180 AALGKR-HGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVPE 227 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 10/229 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I++D+ ++ T EGY V+V G ++ DLI+LDI +PD + Sbjct: 1 MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + + LR+ + + I++VTG DR+ GLE GADDY+ KP ELV RVK LL R+ Sbjct: 61 GLEVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRL 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D ++ +D F+ +++S R I+ + E+ +L F+ +P ++L+RE Sbjct: 121 DHKKK-----EDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRE 175 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFL 225 L+ + + ++V + LR KL L+ T G GY L Sbjct: 176 LLMDRVWGFDFRG-ESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVL 223 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 282 bits (722), Expect = 8e-75, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 133/234 (56%), Gaps = 8/234 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++ +D+P + Y Q + V + SG +++I++ +D+++LD+ LPDE+GL Sbjct: 6 QILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPDEDGLQ 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R LR RS + II+++ + +++DRI+GLEMGADDYV+KP REL+ R+K++L R Sbjct: 66 LCRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRRARSL 125 Query: 124 RQAQPHTQDN-CYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + Y F+G+ ++ TL G + LT E+ +L F+ +P +LSR++ Sbjct: 126 PETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPNRVLSRDQ 185 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADVC 230 +L + + E P RT+D+ + RLR +L L+ T GY + V Sbjct: 186 ILDLTYGKDQE-PFGRTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGYVFCSRVT 238 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 116/233 (49%), Gaps = 10/233 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP +I++V+DE ++ + GY V G E+ ++++ DLI+LD+ +P + Sbjct: 1 MP-NILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLD 59 Query: 61 GLMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G + R L+ + II+++ RSD +D+++GLEMGADDY+TKP RELV RV L Sbjct: 60 GYSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARL 119 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R P N ++ ++E G+ L E+E+L PG+ Sbjct: 120 RRDKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYF 179 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFL 225 SR LL+ V N D RTVDV IRR+R KL + T G GY Sbjct: 180 SRYFLLKQFWEFDVSN-DSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRF 231 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 115/225 (51%), Gaps = 8/225 (3%) Query: 1 MP-HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M +HI++VED+ Q ++ + + YTV V + G QS DLILLD+ +P+ Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 NG +++ +R +S V II++T + D++ G ++G DDY+TKP L+ RV+ +L R Sbjct: 61 NGFEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + +N F ++V + + + I LT E+E+L N ++L+R Sbjct: 121 ------SYDKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTR 174 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYF 224 E ++ + + R +D I+ LR KL+ + T G GY Sbjct: 175 ENIVEKVWGYDYFG-ETRIIDTHIKNLRKKLAIPYIKTIKGIGYK 218 >UniRef50_A7GLY2 Two component transcriptional regulator, winged helix family n=9 Tax=Firmicutes RepID=A7GLY2_BACCN Length = 220 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 112/227 (49%), Gaps = 7/227 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +HI+++ED+ Q ++ + + Y V+V + G + DLILLD+ +P+ N Sbjct: 1 MNYHILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLN 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + +R +S + IIL+T + D++ G ++G DDY+TKP + RV+ +L R Sbjct: 61 GFEVANIIRNQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R DN F ++ + + + I LT E+E+L + N ++++RE Sbjct: 121 YGERT------DNHLSFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRE 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAA 227 ++ + + R +D I+ +R KL+ + T G GY + Sbjct: 175 NIVERVWGYEPYG-ETRIIDTHIKNIRKKLNTPYIKTVKGIGYKIDG 220 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 281 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 7/229 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++I++DE ++ Y EGY V +G+ I+ + + +++LD+ +P +G Sbjct: 3 NVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + +R+ + II+++ +S +D+I GL GADDY+ KP EL+ RVK+ + R Sbjct: 63 VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122 Query: 124 RQAQPHTQD-NCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + D + F +N H + G+ +KLT EYE+L+ N G + S E + Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAEDI 182 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 + + + + TV V I RLR K+ + ++ T G GY + Sbjct: 183 FKEVWKEKYFEGN-NTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIE 230 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 15/234 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I ++ED+ +Q GY + + ++ A L + Q L +LDI +P + Sbjct: 1 MSQTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGD 60 Query: 61 GLMLTRALRER---STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + R LR S++ II VT R+ DR++GLE+GADDY+TKP REL+ RVK +L Sbjct: 61 GLDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R + + + F ++ S L+ GE T E+ +L +PG + Sbjct: 121 RRFERP------STPSLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVF 174 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 SR+ LL + R+VDV +RR+R K+ +D L T G GY Sbjct: 175 SRDHLLDAVWG-DARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 121/235 (51%), Gaps = 10/235 (4%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 MP+ I+IV+DE ++ +EGY V SG + + + DL++LD+ LP Sbjct: 1 MPNEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGI 60 Query: 60 NGLMLTRALRERS---TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNL 116 +G +TR +R + + I+++T + + D + GLE+GA+DY++KP RELV R++ + Sbjct: 61 DGFEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGI 120 Query: 117 LWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 L R R +P TQ ++V RH + D + LT +E+++L VT G + Sbjct: 121 LRR--RTRVEKPATQATVIA-GPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWV 177 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAADV 229 +R +++ + + R+VDV I LR KL D + T G GY + Sbjct: 178 FTRGQIVDAVHGENYAVTE-RSVDVTIAGLRKKLGPCADFIETVRGVGYRFREEA 231 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 129/232 (55%), Gaps = 8/232 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-NQSVDLILLDINLPDENGLM 63 I +V+D+ + L++Y + +TV SG + Q VDL++LDI LP ++G Sbjct: 7 IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R+LR +S V +I++T SD +DRI+GLE+GADDY+ KP REL+ R+K +L R++ Sbjct: 67 VCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRMEHT 126 Query: 124 RQAQ-PHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + YRFA + L+ L E L+ A+Y +L+ F+T+PG +L+RE + Sbjct: 127 EVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGAVLTRELI 186 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 R D R +DV + RLR +L D L+ T G+GY L A V Sbjct: 187 AENTRGRDSAPLD-RFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTASV 237 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 112/228 (49%), Gaps = 9/228 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+DE ++ L GY V+ A+G + + DLILLD+NLPD G Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 64 LTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R LR+R V ++ +TG DR+ GL+MG DD+VTKP EL+E+ RV+ LL R Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R P N R L+ H + P+ LT E+ +L + NPG +LSR ++ Sbjct: 148 GR---PAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQI 204 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAA 227 + R E VD I LR KL L+ T G GY L Sbjct: 205 QERVWNHRDEGSG--VVDTYIYYLRRKLGEPGQSLIRTVRGVGYQLCT 250 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 14/231 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++VED ++ Y EG+ V + G ++ + + D I+LDI LP +G+ Sbjct: 2 KILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIE 61 Query: 64 LTRALR--ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR E+S V I+++T +R+ GL +GADDY+ KP +LRELV RV+ L+ R Sbjct: 62 ICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRNQ 121 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + RQ ++ +N+ + GEP+ L+ E+ +L F+ NPG + SRE+ Sbjct: 122 VVRQ-------ETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQ 174 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLS----ADLLVTQHGEGYFLAAD 228 +L L E P VDV + LR KL + + T H GY L + Sbjct: 175 ILDKLWESGFE-PRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLKKE 224 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 9/230 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+I +D+ + QEGY V G ++ D++++DI +P +GL Sbjct: 5 TILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLE 64 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 ++ ++ + V II+++ + D +D+IVG +MG DDY TKP EL +RVK +L R + Sbjct: 65 ASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR---S 121 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + + + + S + G+ + LT E++ML ++P +I SR +LL Sbjct: 122 KAVPEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLL 181 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 + E + TV V IRRLR K+ D L+ T G GY A Sbjct: 182 EQIWESHFEGDED-TVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAP 230 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 90/242 (37%), Positives = 136/242 (56%), Gaps = 16/242 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI +++DE L +Y G+ V+ +G L +M + DL+LLD+ LP E+G Sbjct: 6 HIAVLDDEIDITQLLANYLQSHGFRVTQLHNGPSLMALMDSDPADLVLLDLGLPGEDGFS 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL- 122 + R +RE G+++VTGR D +D++VGLE+GADDYVTKP +LRELV RVK +L R+ Sbjct: 66 IARRMRENWRCGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVLRRLAPD 125 Query: 123 --------ARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNP 173 + + + RFAG+ L+++ +L G+ + LT E+++L AF +P Sbjct: 126 DAPVAVPASSRPAGLASADRLRFAGWQLDLAARSLTNPQGQNVALTGGEFDLLCAFARHP 185 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 G +LSR+ LL R D RT+DV + RLR K+ AD ++ + G GY L Sbjct: 186 GRVLSRDFLLEQTRGREASPFD-RTIDVQVGRLRKKIEADPDEPQIVKSVRGAGYILVPP 244 Query: 229 VC 230 V Sbjct: 245 VT 246 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 11/232 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGY-TVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 I+IV+DE +Q +EG+ + + ++ + L +LD+ LPD Sbjct: 3 QPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGE 62 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + +R +S + I+ ++ +S+ +D+++GL +G DDY+TKP +E+ RVK L R+ Sbjct: 63 GYQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRV 122 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + T + +N + +GE ++LT E +L F+ NP ILS+E Sbjct: 123 SMMEAPVAETT----TVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 L + D TV V IRRLR K+ + + T G GY L Sbjct: 179 TLFTQVWGESFFGSD-NTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 124/231 (53%), Gaps = 11/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+IV+DE + ++ + +++GY + +G + M+ S LI+LD+ +P+ + Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G + +R+ + + I+++T R++ D++ GL++GADDY+TKP + EL+ RV LL R Sbjct: 61 GWEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + + TQ F ++V H + P+ LT E+E+L + NP ++ +R Sbjct: 121 AVVNQT----TQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNR 176 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 ++LL + D RTVD I+ +R KL + ++ T G GY L Sbjct: 177 DQLLLKIWGVDFLG-DERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 13/231 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++IVED + ++ Y + GY V V ++G ++ DL+LLD+ +P +GL Sbjct: 23 KTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGL 82 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R R V +I +T R +D+++GLE+GADDYVTKP + EL+ RV+ L R Sbjct: 83 EFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRR--- 139 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + R L+ + T GE + LTR+E+E++ AF+ PG + +R Sbjct: 140 ---SSEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLE- 195 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 + + RT+DV +R LR K+ A+ L+ T G GY L D Sbjct: 196 -LLEQLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 9/232 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+IVED+ Q Y + G V++ G + N+ DL++LD+ LP +G Sbjct: 9 TPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDG 68 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R +R I+++T R++ +D+++GLEMGADDYV KP + R L+ R++ LL R + Sbjct: 69 LTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSE 128 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A + + F ++ ++ +GE + T AEY++L +N G ILSRE Sbjct: 129 NAPSEEIPQR---LEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRED 185 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 + L + D R++DV I R+R K+ D + T +GY + Sbjct: 186 IFERLRGIEYDGQD-RSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 236 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++IV+DE ++SY +EG V G E+ + + DLI+LD+ LPD G Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + +R+RS V II++T + D I GL MGADDY+TKP REL+ R+ + R++ Sbjct: 65 EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLN- 123 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + P + + + +++ + + ++GE I LT +Y++L+ + P + +RE L Sbjct: 124 -EEVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREEL 182 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 + + D R VD ++ +R K+ + ++T HG GY + Sbjct: 183 ISTALGDDYDGYD-RNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGE 232 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 129/232 (55%), Gaps = 11/232 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP +I +VED+ + SY + + V V A G + + + Q DL++LD+ LP + Sbjct: 47 MP-NIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGID 105 Query: 61 GLMLTRALRERSTV-GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 GL L R LR+ S I+++T R D D+++GLEMGADDYVTKP E R L+ RV+ LL R Sbjct: 106 GLQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRR 165 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + +P ++ G ++++ T+ GE ++L+ EY +LV N GE+++R Sbjct: 166 SSV---NEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNR 222 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 +R+L+ L D R+VDV I +LR K + + T G+GY + Sbjct: 223 DRILQQLRGIEFNGTD-RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFS 273 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 8/230 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I +V+DE ++SY GY V V +G + + DLI+LD+ LPD G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + LR+RS V II++TG++D D + GL++GADDY+TKP R+LV RVK LL R + Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 129 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + +N + +++ G + LT EY +L+ + PG+I +RE L Sbjct: 130 --ELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREEL 187 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + + + + D RT+D I+ LR+K+ + +VT G GY + Sbjct: 188 IIVTLGQNFKGYD-RTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKFGS 236 >UniRef50_B5ZZQ5 Two component transcriptional regulator, winged helix family n=12 Tax=Alphaproteobacteria RepID=B5ZZQ5_RHILW Length = 234 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 7/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DEP + + + G + +G + +DLI+LDI +PD + Sbjct: 1 MAPRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R +R+ S + I+ ++ R + ID+++GLE+G DDYVTKP RELV RVK +L R Sbjct: 61 GLDVCRQIRKTSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +A+P + + L+ T+ I +T E+ +L A ++ P + SRE Sbjct: 121 G--NEAEPERRRAIFVAGELSLDRQGRTVMFGDSAISMTVLEFAILDALLSRPDMVFSRE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFLAAD 228 RL+ D RT+D IR +R K ++ T HG G+ L ++ Sbjct: 179 RLMEAAYGAGTYVAD-RTIDSHIRNIRAKFLAAGGQGIIATVHGIGFKLGSE 229 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 83/236 (35%), Positives = 142/236 (60%), Gaps = 9/236 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 +HI+I++D+ + Y + + + +G +++++++ + DLI+LDI LP +G Sbjct: 10 KNHILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGIDG 69 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI- 120 L L + +R+ T+ II+++ + DR+ GLE+GADDY++KP REL+ RVK L R Sbjct: 70 LDLCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRTQ 129 Query: 121 -DLARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 DL+++ + + F + L+ + H+L +RD I L++ EYEML+ F+ +PG IL+ Sbjct: 130 GDLSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRILN 189 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 R++L+ +L + ++ D RT+DVLI RLR K+ D LL+T G GY V Sbjct: 190 RDQLMDLLYDKDCDSQD-RTIDVLIGRLRKKIEQDPRNPQLLLTIRGGGYQFKTKV 244 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 122/228 (53%), Gaps = 9/228 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 +++VED+ + L+ GY+V SG E +N++ +L++LDI LPD +G Sbjct: 4 KVKLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDG 63 Query: 62 LMLTRALRE-RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + + LR+ + V I+++T + D++ G E GADDY+TKP + EL+ R+K LL R Sbjct: 64 YEVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRK 123 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 ++ + +F + ++ T+ +G+ + L++ E+++L+ N ++S+E Sbjct: 124 NI-------SISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKE 176 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAAD 228 +L + D TV+V + +R KLS +L+ T G GY L + Sbjct: 177 EILDAVWGIDYYGSD-NTVEVYVNYIRKKLSPELIKTIRGVGYKLVGE 223 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 13/235 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+I +D+ + L+ Y EGY V GA ++ +DL+LLDI +P +G + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI---- 120 R +RE S + +I+V+ + D+I+GL++GADDY+TKP E + RV++ L R Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 121 -----DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 D P L++ L R EP+ LT E+ ML F+++PG Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPGR 190 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAA 227 + +++++ V V I +LR KLS D + T G GY + A Sbjct: 191 VFTKQQIFEEGWGEEYVASGNN-VMVGISKLRAKLSDDPGAYIATVRGLGYRMEA 244 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++VED+ + + + E Y+V G EI +N S D+ILLD+ LP +G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + +R S V +I+ T + D+++GL +GADDY+TKP + EL+ R+K + R + Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 ++ ++QD ++ +N+S++ + + G + LT E+E++ TN G S+E+L Sbjct: 123 SSR-NSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLYN 181 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAAD 228 + + ++ I RLR+KLS + + T G GY + + Sbjct: 182 AIWKEPYYG-NENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEEE 229 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 14/235 (5%) Query: 1 MPHH-IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 MP+ I++VED+P+ ++ Y G+ A G + DL++LD LP Sbjct: 9 MPNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGV 68 Query: 60 NGLMLTRALRE-RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 +GL L R+ ++++T R++ R+ L GADDY+ KP +ELV RV+ LL Sbjct: 69 DGLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLR 128 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R + + G ++ + ++ G PI L E+++L +PG + S Sbjct: 129 RAYASGYRDCSPK------NGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYS 182 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 R+ LL + E RT+DV +R+LR KL D ++T G GY A Sbjct: 183 RDELLERVWGYDFEGGH-RTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGP 236 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+D+ EGY V G E + + DL++LDI +P + Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +RERS V +IL+T +S +D++VGLE+GADDY+TKP + +EL+ R+K +L Sbjct: 61 GFEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL--- 117 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + +D R ++ + +T+ RDGEP+ LT E+++L + PG+ +R Sbjct: 118 RRLGRREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRA 177 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYF 224 ++ +S R +DV I RLR K+ D ++ T GY Sbjct: 178 QISEAVSTGSHYLA-SRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 8/222 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++VEDEP ++ Y T++G+ V + G + +LDI LP G + Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 65 TRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R LRE ++ +T R D +DRI+GLE+GADDYVTKP RELV RV+ +L R Sbjct: 71 CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRT--- 127 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 P + L+ +R T+ GEPI+LT E+++L + PG + +R LL Sbjct: 128 -VGVPEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELL 186 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLS--ADLLVTQHGEGY 223 + + RTVDV + ++R KL A ++ T G GY Sbjct: 187 AAVWGYAAHS-STRTVDVHVAQVRAKLGGAAGVIRTHRGVGY 227 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 10/230 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IV+DE + Y +GY + G ++Q+ DLILLDI +P +GL Sbjct: 2 QTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGL 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R + ++ +I ++ R +D++ E+GADDY+TKP + EL R+K + + Sbjct: 62 EVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYAM 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 P ++ R+ ++ E +GE I LT E ++L+ F +P ++ + E+L Sbjct: 122 ----NPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQL 177 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 + TV V I LR K+ + + T G GY Sbjct: 178 YDRIWNLDATGYVE-TVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_Q020N6 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q020N6_SOLUE Length = 250 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 8/226 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++VED+ + + YF Q G+ V G S DLI+LD+ LP +G + Sbjct: 27 ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGFEV 86 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R LR+RS +I++T R + DR+ GL GADDY+ KP EL+ R++ +L R Sbjct: 87 LRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGHTD 146 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 A P AG ++ + + GE I++T E+++L V + G ++R+ L Sbjct: 147 AAPPQ----IVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDEL-T 201 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAA 227 + +R P R++DV I LR KL D ++ T G GY A Sbjct: 202 AVLYQRPATPYERSLDVHISHLRKKLERDDRSVIRTIRGVGYQFMA 247 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 73/265 (27%), Positives = 122/265 (46%), Gaps = 46/265 (17%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+IVEDE +Q Y ++EG+ + G + + DLI+LD+ +P +GL + Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 65 TRALRERSTV---GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 +R+++ + I+++T R + +DRI+GL GADDY+ KP RELV RV+ +L R Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERD----------------------GE----- 154 H Y+ A + +++ + T + G+ Sbjct: 123 RGS----HQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQ 178 Query: 155 ------PIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRH 208 P++LT E+++L F++ PG + +R +L+ L D R VD I RLR Sbjct: 179 LEIAQIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFG-DERVVDTHIARLRK 237 Query: 209 KLSAD-----LLVTQHGEGYFLAAD 228 K+ D + T G GY + Sbjct: 238 KIEPDPSAPTFVKTVVGVGYRFEDE 262 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 9/231 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H I++ +DE L Y Q G+ V +G+ + ++ LI+LD+ LPD G Sbjct: 5 HTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGE 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + A+R RS V I+++T + DR+ GL++GADDYVTKP E+V RV+ +L R L Sbjct: 65 EVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTML 124 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 P YR ++ + + G +LT EY++LV +P + SRE L Sbjct: 125 D---HPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREEL 181 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 + + D+RT+D ++ LR K+ D + T +G GY D Sbjct: 182 IERVFGMDFRG-DVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGD 231 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 10/231 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++ EDE ++ + + GY V +G + + Q+ D++LLDI +P+ +G Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 64 LTRALRERSTV-GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R + V GII++T R+ D+++GL +GADDY+ KP EL+ R+++LL R++ Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R+ + Q + +++ +++ G +++T EY++L F+ N +++SR+ L Sbjct: 123 LRRRK---QPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDEL 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L + D +TVDV IRRLR K+ + + T G GY + Sbjct: 180 LDAVWGENYFG-DRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRNE 229 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 279 bits (716), Expect = 4e-74, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 113/234 (48%), Gaps = 14/234 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I +VEDE L+ EG+ V G +Q + DL++LD LP + Sbjct: 1 MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVS 60 Query: 61 GLMLTRALRERSTV---GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G+ L R LR+R II++T R + +R+ GL GADDYV KP EL+ RVK +L Sbjct: 61 GIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R A+P R L+ H + R ++L E+ +L +++PG + Sbjct: 121 RR------AKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVF 174 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS----ADLLVTQHGEGYFLAA 227 SR +LL + + D RTVDV + RLR L+ D++ T G GY L + Sbjct: 175 SRSQLLDGVWGHDIY-VDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLES 227 >UniRef50_A5VZA1 Two component transcriptional regulator, winged helix family n=27 Tax=Gammaproteobacteria RepID=A5VZA1_PSEP1 Length = 260 Score = 279 bits (716), Expect = 4e-74, Method: Composition-based stats. Identities = 86/237 (36%), Positives = 128/237 (54%), Gaps = 13/237 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+D+ + LQ+Y ++ G+ V A G G R ++ DL++LD+ LPDE+G Sbjct: 25 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 84 Query: 63 MLTRALRERST---VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 L R +R+ V II++T SD DR++GLE+GADDY+ KP REL R+K LL R Sbjct: 85 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 144 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + + A F + L+ H L RDGE + L+ A++ +L F+ +P +IL Sbjct: 145 SEFGQAAPGSA---VLAFDDWRLDTVSHRLFHRDGEEVILSGADFALLKLFLDHPQQILD 201 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADVC 230 R+ + R D R VD+ + RLR +L L+ T G GY LAA VC Sbjct: 202 RDTIGNATRGREPMPLD-RIVDMAVSRLRQRLRDTDKPPRLIRTVRGSGYLLAAHVC 257 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 279 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 128/228 (56%), Gaps = 11/228 (4%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 +IV+D+ + L Y T+ G +R+ + +++ D+++LD+ LP E+GL L Sbjct: 33 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLSLC 92 Query: 66 RALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQ 125 R LR S + I+++T R + DRI+GLE+GADDY+ KP E RELV R++ +L R+ R Sbjct: 93 RWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDERS 152 Query: 126 AQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 Q T RF + LN L DG + L+ AE+ +L F+ P +LSRE+LL Sbjct: 153 DQRTT----IRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLD 208 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 R +E D R++D+L+ RLR KL D L+ T GEGY A Sbjct: 209 AARGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFDA 255 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 279 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 12/228 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +++++D+P A LQ T EGY V V G + + +L++LDI LP + Sbjct: 1 MGARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + R+ + I++++ R + ++ GL +GADDY+ KP L EL+ RV+ LL R Sbjct: 61 GWEICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRR 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 T + +F+ +++ + R G + LT E+++L F+ +P ++L+RE Sbjct: 121 --------ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTRE 172 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA---DLLVTQHGEGYFL 225 +++ + ++V I LR K+ ++ T G GY L Sbjct: 173 QIIDRVWGLDFTGG-SNVLEVYINMLRQKIEDYGSRIIHTVRGVGYVL 219 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 279 bits (715), Expect = 5e-74, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 13/232 (5%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M + ++IVEDE L+ Y +EGY VS+ G + ++ Q++ +ILLDI LP Sbjct: 1 MSNEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRL 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + R +R+ S V II++T + + +DRI+G E+G DDY+ KP RE+V RV +L R Sbjct: 61 DGKTVCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + D+ LN + E +G + LT +E+++ + +P + +R Sbjct: 121 TF------KKSSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTR 174 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLA 226 +L+ + + + RT+D I+ LR K+ ++ + +G GY + Sbjct: 175 AQLIEKVQGYNYDGYE-RTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKIV 225 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 279 bits (715), Expect = 5e-74, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 12/230 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS-VDLILLDINLPDEN 60 I++VEDE A ++ +EGY V G E + + D ILLD+ LPD + Sbjct: 10 QKTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDIS 69 Query: 61 GLMLTRALRER---STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G + + LRE+ V +I+VT + IDR+VG E+GADDYV KP +REL++R++ LL Sbjct: 70 GTEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALL 129 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R + +P + F ++ H + D + I LT E+ +L AF++ G + Sbjct: 130 RRTE-----RPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQ 184 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFL 225 +R+ LL + + RTVD ++RLR KL + T G GY Sbjct: 185 TRDALLSDVWGIEADVT-TRTVDTHVKRLREKLGDAGRYVETLRGVGYRF 233 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 279 bits (715), Expect = 5e-74, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 119/234 (50%), Gaps = 11/234 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++ ED+P L EGY V G QS DLILLD+ LP + Sbjct: 1 MTPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRS 60 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G + + LRE V I+++T R + +D++VGL+ GADDY+TKP E+ EL+ R++ LL R Sbjct: 61 GFDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + R ++ G ++ R + R G+P+ L+ EY +L + + GE ++R Sbjct: 121 APVRRS----LNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTR 176 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 E LL + D RTVDV + LR KL + L T G GY L+ + Sbjct: 177 EDLLTQVWGYSA-TTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDE 229 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 279 bits (715), Expect = 5e-74, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 13/237 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++I++VEDE ++ Y +GY V +G ++++NQ + L ++DI +P +G Sbjct: 3 SYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + LT LRE +I+++ +S+ +D+I+GL +GADDYVTKP + EL+ RV + L R Sbjct: 63 ITLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYT 122 Query: 122 L------ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 ++ + + D+ + G LN + + DG+ IK T E+++L + N G Sbjct: 123 KYLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGR 182 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + S + + + N D TV V +R +R K+ D L G GY + Sbjct: 183 VFSADEIYERVWNENAINTD--TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 237 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 11/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +IVED+ + L+ F EG+ V + G + + S D+I+LD+ +P + Sbjct: 1 MSLKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKID 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + + LR +S + II++T +S D++ GLE GADDY+TKP +EL++RVK +L R Sbjct: 61 GVKVCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRY 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + Q+ +++ + G+ I LT E+E+L NP + + RE Sbjct: 121 N-------KVQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRRE 173 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA---DLLVTQHGEGYFLAAD 228 LL + + D VDV I+ +R+KL L++T G GY L+ + Sbjct: 174 VLLNKVWGI-ASDYDSNIVDVYIKNIRNKLEDKPPKLILTIRGRGYMLSTE 223 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 6/230 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 + I+IV+D+ + + QEG+ V +G +I+ N S+ L +LDI +P +G Sbjct: 18 KNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDG 77 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + L R +RE+ ++ I+ ++ +S +D+++G GADDY+ KP E + RVK L R Sbjct: 78 IELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYT 137 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 Q + G ++ T+ GE I LT+ EY++L + + E Sbjct: 138 YFNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEE 197 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 + + R + TV V I RLR+K+ + + G GY + Sbjct: 198 IYESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 10/228 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++IVEDE Q + Y + G+T G I+++ +DL++LD+ +P +G Sbjct: 22 NVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDGFS 81 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + RE S + II++T + D++ G E GADDY+TKP + L+ + LL R A Sbjct: 82 VCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPA 141 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + S H + DG+ I LT EYE+L + NPG+I +R++LL Sbjct: 142 -------PLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLL 194 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD--LLVTQHGEGYFLAADV 229 + E RTVD I+ LR KL + +VT GY V Sbjct: 195 NRIWGYDFEGT-TRTVDTHIKTLRQKLGDEGKHIVTLIRSGYKFEVAV 241 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 278 bits (714), Expect = 6e-74, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 8/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++I+ED+ + Y + Y V G I+QN + L+LLDI LP Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R S II ++ + D D++ GL+ GADDY+TKP + EL R+K L R Sbjct: 61 GYEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + A + + +++ + + G + L E ++L+ V N + S E Sbjct: 121 KM--NANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 ++ + DL+TV V I LR K+ + L+ T G GY + Sbjct: 179 KIYDQIWGIDHCG-DLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFST 229 >UniRef50_C6D1N2 Two component transcriptional regulator, winged helix family n=3 Tax=Bacillales RepID=C6D1N2_PAESJ Length = 232 Score = 278 bits (714), Expect = 7e-74, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++VED+ + + +EGYTV A G E + D+I+LDI +P NG Sbjct: 2 KVLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGYE 61 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R L ++ G++L+T ++D +D+++GLE+GADDY+TKP ++RE++ RVK L R Sbjct: 62 VFRKLNQKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSHFT 121 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + G + T+ DG+ + LT E+++LV NP ++ SR+ LL Sbjct: 122 TFKNSEIEKVTTEMGGLSIEPYSRTVRMDGQELDLTLKEFDLLVELACNPDQVYSRKVLL 181 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAA 227 + + RTVD+ I+RLR KL L+ T +G GY + Sbjct: 182 KKVWDIHYAGG-TRTVDIHIQRLRKKLGRWHGLIQTINGIGYKFIS 226 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 278 bits (714), Expect = 8e-74, Method: Composition-based stats. Identities = 108/235 (45%), Positives = 154/235 (65%), Gaps = 9/235 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP HI++VED+PV++A L YF +EGY VS + + L + ++ + + L+LLDI LP ++ Sbjct: 8 MP-HIMVVEDDPVSRALLVGYFEKEGYRVSASDNADDLLQRVEQERIALVLLDIRLPGKD 66 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL LTR LR S VGIILVT R D IDRIVGLE+GADDYVTKP REL+VR +NLLWR+ Sbjct: 67 GLTLTRELRAASRVGIILVTARDDEIDRIVGLELGADDYVTKPFNPRELLVRARNLLWRV 126 Query: 121 -DLARQAQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 A + C+RF G+ LN R + DG +L + E+++L+A +++ G++LS Sbjct: 127 AQCAGSETREAEQGCFRFEGWTLNPHKRQLVSPDGRIERLPQGEFKLLMALLSHAGQVLS 186 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 R++L+ + R P+ RTVDVL+ R+R KL + L++T HG GY A + Sbjct: 187 RDQLMDAIHDREW-TPNDRTVDVLVGRVRRKLDDNPADPRLILTAHGAGYLFAGE 240 >UniRef50_C6PCT6 Two component transcriptional regulator, winged helix family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCT6_CLOTS Length = 224 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I I++D+ + + Y +EGY V + + E D+++LDI +P + Sbjct: 1 MSELIYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + +R+ S V II+V+ R + +D+I+GLE+G+DDY+ KP REL+ R+K++ R+ Sbjct: 61 GYELCKEIRKISDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRV 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + +++ N R + + +GE + T E+E++ N + +RE Sbjct: 121 KMPKRS------NEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTRE 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA---DL-LVTQHGEGYFLAA 227 +LL + + R VD +++R+R KL + + + T G GY + + Sbjct: 175 QLLEKVWKYDSFT-ETRAVDDMVKRVRKKLQSYGCEFNISTIWGYGYKVES 224 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 15/231 (6%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++I+I+EDE +++Y +EGY V T +G E+ + + +DL++LD+ LPD +G Sbjct: 2 NNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGE 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + LR+ S V I ++T +S D+I GL +GAD+Y+TKPL REL RV L R+ Sbjct: 62 EVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGC 121 Query: 123 ARQAQPHTQDNCYRFAG--YCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + +N F ++V + ++ GE I LT E+++L +N G++ +RE Sbjct: 122 KK-------ENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTRE 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 ++ + D R++DV I+ LR K+ D +VT GY Sbjct: 175 AIIERAFGMEFDGSD-RSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKFG 224 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 8/232 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IVED+ Y G VS+ GA + + DL++LD+ LP E+G Sbjct: 9 HVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGEDGFS 68 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R++R+R I+++T R+D D I GL+ GADD+V KP+ R L+ R+K LL R + Sbjct: 69 ICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRSEAP 128 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + P + F ++ + + I+LT AE+++L V N G LSRE + Sbjct: 129 Q--VPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIF 186 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 L + D R++DV I R+R K+ D L+ T +GY + Sbjct: 187 TALRGVGYDGQD-RSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAA 237 >UniRef50_C1SI97 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI97_9BACT Length = 236 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 5/229 (2%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+D+P L+ EGY V ++G + + + D+I+LD+NLPD NG Sbjct: 8 KILVVDDDPDILEVLRLLLDLEGYNVITASNGITGLALARENTPDMIVLDLNLPDINGQQ 67 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R + I++++ R + D++V LE GADDY+TKP E EL+ RVK +L R + Sbjct: 68 ICKIIRSELDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSEKN 127 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 +Q + F ++ + + E + LT EYE+L+ FV G +LSR+ ++ Sbjct: 128 NTSQEAGTGDVLIFHHMTIDKASRQVFIKDEKVALTPKEYEILLYFVGKTGHVLSRDDIV 187 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 + + R++DV I+ LR K+ D++ T G GY + Sbjct: 188 NDIWGKNSIYSWSRSLDVHIKNLRQKIEINPKNPDIVKTVSGVGYKIKK 236 >UniRef50_A6M2A3 Two component transcriptional regulator, winged helix family n=13 Tax=Clostridium RepID=A6M2A3_CLOB8 Length = 242 Score = 277 bits (711), Expect = 1e-73, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 21/241 (8%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++VEDE L+ ++E + V +G +I + L+LLDI LPD +G Sbjct: 3 KKKILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDISG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI- 120 L + + ++S I+++T R D ID+I+G+E+GADDY+TKP E+RE+ R+ + R+ Sbjct: 63 FELCKIMSQKS--YIVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRRVS 120 Query: 121 ------DLARQAQPHTQDNCYRFAG-------YCLNVSRHTLERDGEPIKLTRAEYEMLV 167 + A ++++ G + +N T+ +DG+ I L R E+++L Sbjct: 121 KNIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEFDLLS 180 Query: 168 AFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD----LLVTQHGEGY 223 N G + +R++LL + D RTVDV IRRLR L D ++ T G GY Sbjct: 181 YLYKNKGIVFNRQQLLNEVWGYDYYG-DTRTVDVHIRRLRANLGDDKENSIVETVFGVGY 239 Query: 224 F 224 Sbjct: 240 V 240 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 277 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 12/225 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I VED+ + + EGY + + + S+DLI+LDI LP ++GL + Sbjct: 18 ICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEI 77 Query: 65 TRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + +R + + ++++T ++ D+IVGL+ GADDY+ KP + EL+ RV+ LL R Sbjct: 78 LKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSS 137 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 L++ + L+ + T+ DGE ++LT E+E+L ++N G++L+RE Sbjct: 138 LSKTKSK------IIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTREN 191 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL--SADLLVTQHGEGYF 224 ++ + E + RTVDV I LR KL ++ ++ T GY Sbjct: 192 IMTKIWGFDFEG-ESRTVDVHIATLRQKLKNASSIIKTIRNLGYK 235 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 277 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 25/243 (10%) Query: 1 MPHH----IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINL 56 M + IV+V+DEP + L + G+ V ASG+ E+++ + +LI++D+ L Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60 Query: 57 PDENGLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKN 115 PD +G +TR +R+ V ++ +T R D D+I+GL +G DDYVTKP L E+V R++ Sbjct: 61 PDIDGFTVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA 120 Query: 116 LLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 +L R +P + + + A +N H + R G PI+L+ EY++L + N G Sbjct: 121 ILRRTQ-----EPDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGR 175 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--------------DLLVTQHGE 221 +LS+ ++L + D V+ I LR K+ L+ T+ G Sbjct: 176 VLSKSQILNHVWQYDW-GGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGI 234 Query: 222 GYF 224 GY Sbjct: 235 GYM 237 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 277 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 10/235 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-NQSVDLILLDINLPDEN 60 I++V+D+ ++ + EGY V I++ + + L +LDI +P + Sbjct: 24 KAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMD 83 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + + +RE S + +I+++ +S +D+IVGL GADDYVTKP EL RVK L R Sbjct: 84 GLSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRF 143 Query: 121 DLARQAQPH---TQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 Q + D +N S + + KLT EY++L +NPG + Sbjct: 144 TEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVF 203 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 S + + + + + TV V IRRLR K+ D ++ T G GY + Sbjct: 204 STDDIFTRVWNEKAFEGN-NTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIEK 257 >UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JIF2_OLICO Length = 241 Score = 277 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 133/233 (57%), Gaps = 9/233 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLP-DEN 60 I++V+D+P + + T+EGY G ++ + N DLI+LD++ P E+ Sbjct: 3 TQRILMVDDDPRLCGFVSKFLTREGYATEFAFDGNAMQRALANVPFDLIILDLSFPNGED 62 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ L R +R R +++++GR + +D+I+ LE+GADDY+TKP E REL+ R++ +L R Sbjct: 63 GITLARDIRTRYDTPLVMLSGRHETVDKIICLEIGADDYLTKPFEPRELLARIRTVLRRA 122 Query: 121 DL-ARQAQPHTQDNCYRFAGYCLNVSRHTL-ERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 +++ + + FAG+ L++ R L D E + LT E+ +L A V G +L+ Sbjct: 123 RPTPQRSAAPAEKDIILFAGWRLDLGRRELFSPDDEAVVLTSQEFHLLAALVQRAGRVLT 182 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 R+++L +++ R P R++DVLI +LR KL+ + ++ T G GY Sbjct: 183 RDQILDLIANRHW-TPFDRSIDVLIGKLRRKLNDNNRANQIIKTVRGAGYVFT 234 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 113/231 (48%), Gaps = 10/231 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++VED+ L EGY V G ++S DL++LD+ LP+ NG Sbjct: 5 TRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNG 64 Query: 62 LMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + + LR+R +++++ + D+IVGL +GADDYV KP L+EL+ R+K +L R Sbjct: 65 FEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRR 124 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + A F ++++ T+ R P++LT E+++L F+ +PG +RE Sbjct: 125 YPSAGA---GSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTRE 181 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 LL E RTVD +R+LR K D +T G GY Sbjct: 182 ELLSGAWGYHYEG-SARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 338 1e-91 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 336 4e-91 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 335 9e-91 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 334 2e-90 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 332 5e-90 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 332 7e-90 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 329 3e-89 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 329 3e-89 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 329 4e-89 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 329 5e-89 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 329 6e-89 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 327 1e-88 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 327 1e-88 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 327 1e-88 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 326 5e-88 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 326 5e-88 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 325 5e-88 UniRef50_B8G179 Two component transcriptional regulator, winged ... 325 6e-88 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 325 8e-88 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 324 2e-87 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_C4L340 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 323 3e-87 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 321 1e-86 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 320 2e-86 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 318 7e-86 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 318 9e-86 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 318 9e-86 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 318 9e-86 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 318 1e-85 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 317 2e-85 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 317 3e-85 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 316 4e-85 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 315 5e-85 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 315 8e-85 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 315 9e-85 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 314 1e-84 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 313 2e-84 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 313 3e-84 UniRef50_B8G223 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 313 4e-84 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 312 8e-84 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 312 9e-84 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 311 1e-83 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_D1C280 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 310 3e-83 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 309 4e-83 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 309 4e-83 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 309 4e-83 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 308 6e-83 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 308 6e-83 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 308 7e-83 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 308 9e-83 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 308 9e-83 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 308 1e-82 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 307 2e-82 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 307 2e-82 UniRef50_B8I272 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_D1C683 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 307 2e-82 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 307 3e-82 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 307 3e-82 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 307 3e-82 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 307 3e-82 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 306 4e-82 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_B8I014 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 305 5e-82 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 305 5e-82 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 305 6e-82 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 305 7e-82 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 305 9e-82 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 305 1e-81 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 305 1e-81 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 305 1e-81 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 304 1e-81 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 304 1e-81 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 304 2e-81 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 304 2e-81 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 304 2e-81 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 303 3e-81 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 303 3e-81 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 303 4e-81 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 302 5e-81 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 302 5e-81 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 302 5e-81 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 302 6e-81 UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanob... 302 6e-81 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 302 7e-81 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 302 7e-81 UniRef50_A4J267 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 302 9e-81 UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax... 301 1e-80 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 301 1e-80 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 301 1e-80 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 301 1e-80 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 301 1e-80 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 301 1e-80 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 300 2e-80 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 300 2e-80 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 300 2e-80 UniRef50_A3ERN0 Putative two component transcriptional regulator... 300 2e-80 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 300 2e-80 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 300 2e-80 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 300 3e-80 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 299 5e-80 UniRef50_A4AL32 Putative two-component system response regulator... 299 5e-80 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 299 6e-80 UniRef50_C0WE14 Two-component system transcriptional regulator n... 298 7e-80 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 298 8e-80 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 298 9e-80 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_A7GLY2 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 298 1e-79 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 297 2e-79 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 297 2e-79 UniRef50_B8G869 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 297 2e-79 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 297 2e-79 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 297 2e-79 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 297 2e-79 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 297 2e-79 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 297 2e-79 UniRef50_C4L703 Two component transcriptional regulator, winged ... 297 3e-79 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 297 3e-79 UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridi... 297 3e-79 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 297 3e-79 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 296 3e-79 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 296 3e-79 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 296 4e-79 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_C7LZ74 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 295 5e-79 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 295 5e-79 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 295 5e-79 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 295 7e-79 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 295 9e-79 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 295 9e-79 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 295 1e-78 UniRef50_B1YJZ1 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 294 1e-78 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 294 2e-78 UniRef50_C5CP31 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 294 2e-78 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_C1SI97 Response regulator with CheY-like receiver domai... 293 3e-78 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 293 3e-78 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 293 4e-78 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 293 4e-78 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 293 4e-78 UniRef50_C1IA20 Two-component system response regulator n=1 Tax=... 293 4e-78 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 293 4e-78 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 293 4e-78 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 293 4e-78 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 292 5e-78 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 292 8e-78 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 292 8e-78 UniRef50_C4RGF6 Two-component system response regulator receiver... 292 8e-78 UniRef50_A6M2A3 Two component transcriptional regulator, winged ... 292 9e-78 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 292 9e-78 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 291 1e-77 UniRef50_C6D1N2 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 291 1e-77 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 291 1e-77 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 291 1e-77 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 291 2e-77 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 291 2e-77 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 290 2e-77 UniRef50_B5ZZQ5 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 290 3e-77 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 290 3e-77 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 290 3e-77 UniRef50_C6PCT6 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_C0ZIT9 Two-component response regulator n=2 Tax=Bacilla... 290 4e-77 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 289 5e-77 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 289 5e-77 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 289 6e-77 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 289 6e-77 UniRef50_B0P738 Putative uncharacterized protein n=1 Tax=Anaerot... 289 6e-77 UniRef50_C6VZ09 Two component transcriptional regulator, winged ... 289 6e-77 Sequences not found previously or not previously below threshold: UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 290 3e-77 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 5/232 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +I++V+DE ++ Y EG+T+ + +G ++++ ++L +LD+ LPD + Sbjct: 1 MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + +RE +I++T + + ID+I GL +GADDY+TKP ELV RVK L R Sbjct: 61 GFTLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRF 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +P+ +++ F+G L++ H + + I LT E+ +L +N G ++S E Sbjct: 121 TKYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSE 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAA 227 L + + TV V IR LR K+ + T G GY + Sbjct: 181 ELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIEK 232 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 336 bits (863), Expect = 4e-91, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 121/231 (52%), Gaps = 10/231 (4%) Query: 1 MPH---HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLP 57 MP I++V+DE + L S +E Y + ++G ++MQ + L+LLD+ +P Sbjct: 1 MPEQSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMP 60 Query: 58 DENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 + +GL +RE S V II++T RSD +DRI GL++GADDY+TKP REL+ R++ L Sbjct: 61 EMDGLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R Q L+ ++ G+PI LTR E+++L FV N ++ Sbjct: 121 RRSHRF----TVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVF 176 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD--LLVTQHGEGYFLA 226 SRE+LL + +LRTVD I+ LR KL + T G GY Sbjct: 177 SREQLLDQIWGADYIG-NLRTVDTHIKTLRLKLGEAGGSIQTVWGIGYKFE 226 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 335 bits (860), Expect = 9e-91, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 113/231 (48%), Gaps = 6/231 (2%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IVEDE + + Y +E Y V +G ++ DLI+LD+ +P ++G Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L +R++S V II++T + + DRI+GL MGADDY+TKP RELV+RV+ +L R + Sbjct: 62 ELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + F + + ++LT E+E+L +P ++ SR +L Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAAD 228 L ++ E TV VL+ RLR KL + T G GY + Sbjct: 182 LELIWDFGHEGA-SNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPN 231 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 9/232 (3%) Query: 1 MP-HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 MP H I++VED+ + L +EGYT+ G + L++LD+ LP Sbjct: 27 MPEHKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGI 86 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G L R +R S+V I+++T RS D++ GLE GADDY++KP +REL+ R+K LL R Sbjct: 87 DGFELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 T + + + RH + R+G + + E+++ V N + SR Sbjct: 147 SQTQNSQTETTGG--LKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSR 204 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 E+LL + RTVDV I LR K+ AD L+T G GY Sbjct: 205 EQLLEKVWGYDYPGW-TRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 7/234 (2%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M ++I +DE + L+ Y +E YTV G ++ + + +L++LD+ +P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G+ + R LR + + I+++T + +D+IVGL +GADDY+TKP + E++ R+K L+ R Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + + F G +++S++ + + I LT E E+L F +NP ++ ++ Sbjct: 121 FLVLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTK 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +L R + D TV V IR+LR K+ AD + T G GY + Sbjct: 181 TQLFRNVWDSNYI-EDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 332 bits (854), Expect = 5e-90, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 8/233 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+IV+D+ + Y +E + + G + +LILLD+ LP +G Sbjct: 4 KQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R +R+ ST+ II+++ + + D+++GLE+GADDY+ KP + +ELV RVK +L R+ Sbjct: 64 YEVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVV 123 Query: 122 LARQAQPHTQDNCY----RFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 ++ + +N S +++ G+ I++ E E+ ++P ++ Sbjct: 124 PSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVF 183 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL---LVTQHGEGYFLAA 227 +RE+LL + D RTVDV I+RLR K+ + L T G GY Sbjct: 184 TREQLLDHIWGYEYIG-DTRTVDVHIKRLREKIKDHISWRLSTVWGIGYKFEV 235 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 332 bits (854), Expect = 5e-90, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 8/234 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + I+IV+DE + L+ Y +E + + ++G E+ + ILLD+ LP+ + Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + LRE II++T + + +R+ G E GADDY+ KP RE+V+RVK LL R Sbjct: 61 GIQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRT 120 Query: 121 DLAR-QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + + F ++ H + D + + LT EYE+L+ P ++ R Sbjct: 121 QSTTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDR 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS------ADLLVTQHGEGYFLAA 227 E+LL+ + DLRTVD ++RLR KL+ A ++ T G GY Sbjct: 181 EQLLKEVWHYEFYG-DLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 233 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 332 bits (853), Expect = 7e-90, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 121/232 (52%), Gaps = 13/232 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+DE + L + GY V + A G + DL+LLDI LP+ +GL + Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLEV 60 Query: 65 TRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 R L+ + S + II++T +++ IDR++GLE+GADDYV KP +REL+ RVK +L R Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSA 120 Query: 122 LARQAQPH--TQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 ++ ++ G L+ S + + I LT EYE+L VTNPG SR Sbjct: 121 SVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSR 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 + LL + D RTVDV IR LR KL D + T G GY A Sbjct: 181 DELLERIWGYEYYG-DTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 7/231 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED A + Y V+ + GA + Q+ DLI+LDI LP + Sbjct: 1 MQKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMD 60 Query: 61 GLMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 GL + + LR ++ I+++T + DR+VGLE GADDY+TKP +REL RVK L R Sbjct: 61 GLQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D++++ D+ F C++ ++ L + I LT E+++L+ ++PG++ SR Sbjct: 121 TDMSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSR 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 E+LL + + + TV+ I RLR KL D ++T G GY Sbjct: 181 EKLLDAVWGYQHSGYE-HTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 329 bits (846), Expect = 3e-89, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 4/230 (1%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 +++ +D+P + ++ YF ++ + G E+M+ + D+++LD+ +P +G Sbjct: 32 TMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDG 91 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 R +R++ II++T + + DR++GLE+GADDYVTKP RE+V R++ ++ R+ Sbjct: 92 FEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + + F +++ + + GE + E+++LV V +PG + SRE+ Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRH---KLSADLLVTQHGEGYFLAAD 228 LL + D+RT+DV I+++R KL D + T G GY D Sbjct: 212 LLEQVWGFDYFG-DVRTIDVHIKKIRQRLDKLPYDCIQTVWGIGYKFGVD 260 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 329 bits (846), Expect = 3e-89, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 8/230 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+IV+DEP + ++ + GY G+ ++ DL++LD+ +P +G+ Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 64 LTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R +R R +I++T R + D++ GLE GADDYV KP RELV RVK +L R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +A D F ++ + HT+ GE + LT E+++LV +N G LSRE++ Sbjct: 194 RSEA----SDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKI 249 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAADVC 230 L+ + D RTVD ++ LR L + T G GY D Sbjct: 250 LQKVWNYDYFGED-RTVDTHVKMLRGHLGKCRGYIATVWGIGYKFDPDAA 298 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 329 bits (845), Expect = 4e-89, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 8/231 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+DE + L+ Y +E Y + +G + DLILLD+ +P +G+ Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R +RE+ II++T + + +R+ G E G DDY+ KP RE+V+RVK LL R Sbjct: 68 VCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQT 127 Query: 124 RQ-AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 N F+ ++ H + DG + LT EYE+L P ++ RE+L Sbjct: 128 SYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREKL 187 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLS------ADLLVTQHGEGYFLAA 227 L+ + DLRTVD ++RLR KL+ A +VT G GY Sbjct: 188 LKEVWQYEFFG-DLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+D+ L +Y +EGY+V G + + D++LLD+ LP +G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R S V II++T R D DRI+GLE+GADDYV KP +E++ R++ + R+ A Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + + L+ + +L G P++LT EY++L F+ +PG++ SR +L+ Sbjct: 122 SRRDG--GERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAAD 228 + E + RTVD I+ LR KL + T +G GY L + Sbjct: 180 EKVQDYAFEGYE-RTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGE 228 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +V+V+DE L+ +EGY V G +++ + D++LLDI LP + Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R +R++ + II++T + ID+++GLE+GADDYVTKP REL+ RVK L R Sbjct: 61 GMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRH 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 N + +++++ GE I+LT E+E+ + G++++RE Sbjct: 121 YSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTRE 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGY 223 LL+ + D+RTVDV IRRLR K+ D +VT+ G GY Sbjct: 181 HLLQTVWGYDYFG-DVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++IV+DE + + Y ++ +G +I++N VD+IL+D+ +P +G Sbjct: 3 KKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L +RE+S V I+ +T R D D++ GL++G DDY+ KP EL+ R++ ++ R Sbjct: 63 FTLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAY 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 +Q F ++ + DG+P+ LT E+++L+ + G++ SRE Sbjct: 123 HNKQKNED-----LSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSRED 177 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAA 227 LL + + RTVD I+ LR KL D + T G GY Sbjct: 178 LLAQVWGYDYTG-NARTVDTHIKTLRMKLKQASDFIQTVWGIGYKFEV 224 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 6/231 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 + I++V+DE + + Y EGY V +G E+++ + VDLI+LDI +P+ +G Sbjct: 3 KNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + +RE + II+++ +++ +D+I GL GADDY+TKP EL+ RVK+ L R Sbjct: 63 IEACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYK 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + D+ +N + H ++ + ++LT E+++L N G + S E+ Sbjct: 123 KFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEK 182 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + + D TV V IR+LR K+ + + T G GY + Sbjct: 183 IYERVWKEEFFKSD-NTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVEK 232 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 10/232 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++VEDE + + +Y +E Y V+ G E DL++LD+ LP G Sbjct: 8 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPG 67 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + RA+R+ S V II++T + + DRI+GLE+GADDY+ KP RELV RV+ LL R+ Sbjct: 68 ERVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVH 127 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A Q F ++VS H + G+ + LT +E+++L PG + SR Sbjct: 128 ----ADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRME 183 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L+ + E + RT+D ++ LR K+ + L T HG GY Sbjct: 184 LVEKVLGYDFEGYE-RTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDP 234 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 7/229 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+++ED + +F +EG+ G + ++ DLI+LDI LP +G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R +RE STV II++T + D+++G EMGADDYVTKP LV R+K ++ R Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK-- 119 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIK-LTRAEYEMLVAFVTNPGEILSRERL 182 + ++ + +N + +GEP++ LT E+++L V NP ++ SRE+L Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKL---SADLLVTQHGEGYFLAAD 228 L + + D RTVDV I+RLR KL L T G GY D Sbjct: 180 LEQVWGYQFYG-DERTVDVHIKRLRKKLASEDKPFLYTVWGVGYKFDED 227 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 8/229 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+D+ ++ Y +EG+ V G + ++ D+++LDI LP ++GL Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R LR + II++T + + DR++GLEMGADDYV KP RELV R+K +L R Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQ-- 123 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 A + ++ G + + D ++T E+++L NP + +RE LL Sbjct: 124 --AADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELL 181 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSA---DLLVTQHGEGYFLAADV 229 + D RTVDV IRRLR KL++ + L T G GY V Sbjct: 182 GAVWGYDYFG-DQRTVDVHIRRLRTKLASLPHEYLQTVWGVGYKFTPPV 229 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 10/233 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP I+ V+D+P LQ +EG+ V +SG + + S DL++LD+ +P + Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + L+ + V II+++ R++ +DR+VG MG DDY TKP EL +RVK +L R+ Sbjct: 61 GFETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRL 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + +N ++ L+ ++ T+ + ++LT ++E+L +NP + ++ Sbjct: 121 GEPK----VNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKA 176 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAAD 228 LL + D TV V IRRLR K+ + + T G GY + Sbjct: 177 HLLDKIWDSSFYG-DDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEYE 228 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 10/232 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+IV+DEP ++SY +EGY V +G + DLI+LD +P+ + Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R +R++S + II++T +++ +D+++G E G DDYV KP LREL R+K +L R Sbjct: 61 GIEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR- 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +A+ ++ L + + G+P+ LT E+++L AF+ NPG+ SR Sbjct: 120 ---LEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRL 176 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 LL E + RT+D I LR K+ + + T G GY L Sbjct: 177 ELLEYAIGEAYEGYE-RTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKP 227 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 HI++V+DEP L+ QEG+ V+ + G + DLI+LD+ LP +GL Sbjct: 2 PHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGL 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R II++T ++D ID+I+GLE+GADDY+TKP REL+ R++ +L R + Sbjct: 62 TICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE- 120 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 A + L+ + E G P++LT EY++L +PG + +R+ L Sbjct: 121 --AASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQEL 178 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L ++ D RTVDV +RR+R KL D L T+ G GY+L A+ Sbjct: 179 LDLVWGYDFAG-DERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +++V+DE + L+ Q+ V G E ++N D+ILLDI LP + Sbjct: 10 MAGRVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLD 69 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + + +RE S V II++T + D +D+I+GL+ GADDY+TKP + E+ R+K +L R Sbjct: 70 GLSVCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR- 128 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + Q + N + ++ +L + I LT E+++L NPG++ SR+ Sbjct: 129 -NSSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRD 187 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAA 227 LL+ + + D RTVDV +RRLR K+ + T+ G GY+ Sbjct: 188 NLLKAVWGQDYTG-DARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 325 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 10/232 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++VED+ V Q + +EGYTV + G E++ + DL+LLD+ LP+ +GL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 64 LTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + + +R E + + +I+++ R + DR++GLE+GADDY+TKP REL+ R+K L Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR-- 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + + + + GE + LT E+E+L F+ P ++ SRE Sbjct: 121 --EERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSRE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS--ADLLVTQHGEGYFLAADVC 230 LL+ + V D RTVDV I LR KL + ++ + G GY LA + Sbjct: 179 YLLQKVWGYTVSG-DTRTVDVHISNLRSKLKSVSPIIESVRGVGYRLAVNYS 229 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++V+D+P + +EGY V +++ N+SVD+ ++DI LP +G Sbjct: 27 KKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDG 86 Query: 62 LMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 L R LR + ++ ++ + + D+++GLE+GADDY+TKP +RE++ R+K + Sbjct: 87 FELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFR 146 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 RI L+ Q + + G ++V R+ ++ + + LT E+E+L N G++ S Sbjct: 147 RIQLSAQ-EREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFS 205 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 R+ LL L D RTVDV IRRLR K+ D ++T G+GY Sbjct: 206 RDVLLDKLWGYDYYG-DTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDP 259 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 15/236 (6%) Query: 1 MP-HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 MP ++IV+D+ ++ EG++V + G E ++ + + ++LDI LP+ Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 60 NGLMLTRALRE---RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNL 116 +G + +R S V II++T + + D+I+GL++GADDYV KP RELV RV+ L Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 117 LWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 + R + +D ++ + + + L E+E+L + NP + Sbjct: 121 IRRDQDFK-----DKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERV 175 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 +RE +L + RTVD ++R+R KL + L+ T G GY Sbjct: 176 FTREEILEKIWGFSFAGG-TRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEV 230 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 7/233 (3%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M I+I +DE ++ + +EGY V A G I++ Q +DL++LDI +P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G +TR +R + + II ++ ++ D++ GL +GADDY+TKP ELV RV L R Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 Q + + G ++ R T++ GE I+LT E+++L ++P ++ + Sbjct: 121 FLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNV 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 E + + + A TV V IR LR KL D L+ T G GY Sbjct: 181 ENIFQQVWADDYFEG-GNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 111/236 (47%), Gaps = 9/236 (3%) Query: 1 MPHH-IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M I+I ED+P + + +EGY + A G ++Q ++DL++LDI +P Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 60 NGLMLTRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 +G + R +RE+ + II ++ ++ D+I GL MGADDY+TKP EL+ RV L Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122 Query: 119 RIDLARQ--AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 R Q A P + G ++ + + + I LT E+++L ++P ++ Sbjct: 123 RFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKV 182 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 S E + + + TV V IR LR KL D + T G GY Sbjct: 183 FSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++ +DE + L S +EGY ++G E ++ ++ L+LLD+ +P+ +GL Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 +RE S V IIL+T RS+ +DRI GL++GADDY+TKP REL+ R++ L R Sbjct: 67 ACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSF 126 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + Q+ + +++ + G+ + LTR E+++L F+TN ++ SRE+LL Sbjct: 127 SK----EQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLL 182 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD--LLVTQHGEGYFLAAD 228 + +LRTVD I+ LR KL + T G GY A+ Sbjct: 183 DQIWGTEYHG-NLRTVDTHIKTLRLKLGEAGGYIQTVWGIGYKFEAN 228 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 102/232 (43%), Gaps = 6/232 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+IV+DE ++ Y E + V M+ + +DL LLDI +P + Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL L + +RER II++T + ID+I GL +GADDY+TKP + E+V RVK L R Sbjct: 129 GLELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRY 188 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + G LN H + + LT E+ +L G ++S E Sbjct: 189 KRYNMG-TVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAE 247 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAA 227 L + + T+ V IR LR K+ + T G GY + Sbjct: 248 ELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIEK 299 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 8/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +++V+DE L + +EG+ + G + + + D I+LDI LP + Sbjct: 8 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 67 Query: 61 GLMLTRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G+ + + LR + S I++V+ +SD D+++ LE+GADDYVTKP REL+ RVK +L R Sbjct: 68 GIEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRR 127 Query: 120 IDLARQAQPHT-QDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + ++ Y + L RH + +D E + LT EYE+L+ + +P L+ Sbjct: 128 TEAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLT 187 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 RERLL + + R VDV I +LR K+ + + T G GY Sbjct: 188 RERLLERIWGYDF-GQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 10/234 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DEP ++ GY V + G + E+++ DLI+LD+ LP + Sbjct: 1 MKKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMD 60 Query: 61 GLMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G+ + R LR++S V I+++T D D+I GL+ GADDY+TKP +EL+ R++ + R Sbjct: 61 GIQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 I + + + + + DG I+LT E+E+L+ + G++LSR Sbjct: 121 IQTLP---GQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSR 177 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAAD 228 ++LL + D R VDV I LR K+ + ++T GY L A Sbjct: 178 QQLLHGVWDYHFLG-DTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAP 230 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DE + ++Y GY V +G ++ ++ DLI+LD+ LP + Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ +T LRE+S V I+++T RSD IDR+ GL +GADDY+TKP RELV RV+ +L R Sbjct: 61 GMEITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRR 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + RF ++ G+ ++LT E+++L+A N +LSRE Sbjct: 121 RG-----KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSRE 175 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS----ADLLVTQHGEGYFLA 226 L+ + D R VDV + ++R K+ +L+ T G GY Sbjct: 176 DLIEKVWGADFYGTD-RVVDVYVSQVRRKIEALTGENLIRTARGVGYRFV 224 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 123/231 (53%), Gaps = 7/231 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DE + L+++ + +++ + + G + + DLI+LD+ LP+ + Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R+ I+++T + D++ G GADDY+ KP LREL+ R+K +L R Sbjct: 61 GEEVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 Q + Y+ ++ +R + +G LTR E+ +LV + NPG++ +RE Sbjct: 121 ---NQKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTRE 177 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAAD 228 +L + + + D RT+D I+ +R KL+ + L++T +G GY D Sbjct: 178 QLAKKVMGLEYKGYD-RTIDAHIKNIRKKLNLEKNQLIITVYGVGYKFEGD 227 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 118/236 (50%), Gaps = 12/236 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+DEP L Q GY V GA + QS ILLD+ LP +G+ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 64 LTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 +T+ LR+ II+VT ++D D++ GLE+GADDY+TKP RE++ R+K ++ R Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 123 AR-----QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 P ++ +++ + R+G+ I LT E+E+LV FV G +L Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 SR+ +L + + R VD+ I LR K+ AD L+ T G GY D Sbjct: 185 SRDAILNHVWGYDY-ASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGD 239 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 14/236 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M H+++VEDE LQ +EGY+V+V G + + DL+++D LP + Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 61 GLMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G+ + R LR E + V II++T R + DR+ GL+ GADDYV KP + EL R++ +L Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 RI P ++ ++ H ++R I L E+ +L + +PG + Sbjct: 121 RRIR------PGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVF 174 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFLAADV 229 SRE+LL + V + RTVDV + RLR L D + T GY + Sbjct: 175 SREQLLDAVWGSDVYV-EARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDVNA 229 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 121/242 (50%), Gaps = 20/242 (8%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H I++VEDE + +EGY V G DLI+LD+ LP +GL Sbjct: 2 HRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGL 61 Query: 63 MLTRALRERST--VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW-R 119 + R +R S+ + +I++T +SD I++IVGLEMGADDYVTKP REL+ RVK L R Sbjct: 62 EVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121 Query: 120 IDLARQAQPHTQDNCY-----------RFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVA 168 + N + + ++ + + ++LT E+E+L Sbjct: 122 TKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNI 181 Query: 169 FVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGY 223 VTN G++L+RE+LL + D RTVDV IR LR K+S DL+ T G GY Sbjct: 182 MVTNSGQVLTREKLLEKIWGYDFLG-DTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 224 FL 225 L Sbjct: 241 RL 242 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 318 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 111/232 (47%), Gaps = 6/232 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+IV+DE ++ Y E YTV + E + +DL +LDI LP + Sbjct: 1 MSDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + + +R++ T II++TG+ +D+I GL +GADDY+TKP EL+ RVK L R Sbjct: 61 GLTICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRY 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +N +G +NV+ H + + + LT E+ +L N G ++S E Sbjct: 121 KKF-SGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSE 179 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAA 227 L + + T+ V IR LR K++ + T G GY + Sbjct: 180 LLFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++IVEDE + ++ YF +EG+ V + G I VDL +LDI +P + Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R +RE S IIL+T +S D+++G E+GADDY+TKP + L+ + K LL R Sbjct: 61 GLAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 N F G +N H ++ +GE + L+ EY++L+ +N G LSR+ Sbjct: 121 GTLN------DKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRD 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL--SADLLVTQHGEGYFLAA 227 R+L + D+RTVD I+RLR KL A+ + T G GY Sbjct: 175 RILDNVWGYDYFG-DIRTVDTNIKRLREKLLDKANYIATVRGSGYKFEV 222 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 6/230 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++IV+DE + L++ + GY V + G + + D+++LDI +P +G Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + +R+ S V II++T D DRI GLE+GADDYV KP +EL R++ +L R + Sbjct: 74 YGVCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTN 133 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A + T F +++++ + +D E I+LT E+ +L ++ G+ SR Sbjct: 134 KAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRAD 193 Query: 182 LLRMLSARRVE-NPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFL 225 +L+ + E + D R VDV I RLR KL DL++T G GY Sbjct: 194 ILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 13/239 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-QSVDLILLDINLPDE 59 M HI+IV+D L+ EG++VS SG ++ + +LILLDI +P+ Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G L +R + I+ ++ + +D++VG E+GADDY+TKP + EL+ R++ L R Sbjct: 61 SGYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 120 IDLARQAQPHTQDN--------CYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVT 171 + R+ + +F ++ +++ + I+L+ E+++L Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 172 NPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD--LLVTQHGEGYFLAAD 228 N G + +RE++ + L TV V I+ LR KL + + TQ G GY + Sbjct: 181 NAGIVFTREQIYDRVWGYGY--GSLNTVTVHIKNLREKLETERQFIKTQWGTGYVFIGE 237 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 122/228 (53%), Gaps = 11/228 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++VED+ L +EGY V V G + + DL+LLDI LP+++G Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + +R+ S V II++T + + +D+++GL+MGADDY+TKP +EL+ R++ +L R Sbjct: 62 EVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ + +++ + T++ G+ + L+ E+E+L +++PG + +R+ + Sbjct: 122 D-----LSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMI 176 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 ++ + + R VDV IR LR K+ D ++T GY Sbjct: 177 IKHIWGENFWG-EPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 83/240 (34%), Positives = 117/240 (48%), Gaps = 13/240 (5%) Query: 1 MPH--HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPD 58 M +++VEDE + L+ + QE + V EI++ VDL++LD+ +P Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 59 ENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 +G R +RE S V I+ +T R + DR++G E+GADDYV KP RELV+RVK LL Sbjct: 61 LDGWTTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLR 120 Query: 119 RIDLARQ----AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPG 174 R AQ T + F L GE + L+ EY++L+ N G Sbjct: 121 RRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAG 180 Query: 175 EILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS------ADLLVTQHGEGYFLAAD 228 +LSR+ LL + D RTVD +RRLR KLS A + T G GY + Sbjct: 181 RVLSRDLLLDRVWGYEFAG-DSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVN 239 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 8/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED+ L Y +EGY V + G + L+L+D+ LP + Sbjct: 12 MTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVD 71 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + R +R++S V II+V+ R ID+I L +GADDY+TKP ELV RVK+ L R Sbjct: 72 GFEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRY 131 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + Q+ F G +N +R +E DG+P+ LT E+E+L+ PG++ S+E Sbjct: 132 HRYNGLK--EQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKE 189 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAA 227 +L + + + D+RTV V I+ +R KL + T G GY Sbjct: 190 QLYNRVWKQD-DADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIG 240 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++VED+ L+ + T G+ V V G ++ DLI+LDI LP +G Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 63 MLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR+ I++VT +++ +D+++GLE+GADDY+TKP +RE++ RVK L R++ Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + ++ Q D + + + +GE + LT E+E+L+ F +PG SR+ Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 LL + + TV+ I RLR+K+ D + T G GY A Sbjct: 187 LLDEVWGYQYSGY-SHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFA 235 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 8/234 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +I+IV+DE ++ Y EG+TV +G E ++++++D+ +LDI LPD + Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +RE+ II++T + + ID+I+GL +GADDY+TKP E+V RVK L R Sbjct: 61 GFHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120 Query: 121 DLARQAQPHTQ--DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + N Y G +N H G+ + LT E+ +L + G+++ Sbjct: 121 MRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVP 180 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAA 227 E L + + + + TV I RLR K+ + + T G GY + Sbjct: 181 SEELFEAVWGEKYLD-NNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIEK 233 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++I+EDE +++Y E Y VT +G I Q QS D ++LD+ LPD +G Sbjct: 5 KKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSG 64 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + +R +S V I+++T + + DRI GL++GADDY+TKP +ELV RV+ ++ R + Sbjct: 65 EEICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTN 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + +++ + E ++LT E+++L F+ N G++ SR+ Sbjct: 125 NEGLKAHLIE---LNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDE 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAA 227 L+ + D RT+DV I+ LRHK+ + +VT +G GY Sbjct: 182 LVVKVLGYDYVGYD-RTIDVHIKNLRHKIECEYYKYIVTVYGVGYRFVK 229 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 13/233 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSV-DLILLDINLPDENGL 62 ++IVED+P + ++ ++EG G E++ + DL+LLD+ LP +G+ Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 63 MLTRALRE----RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 + R LRE TV ++++T R D +VGLE+GADDY+TKP R+L RV+ L Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R + QA P + F G +++ R + GE ++LT E+E+L +NPG + S Sbjct: 123 RQRMNAQASPEQRK--LEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYS 180 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 RE+++ L + R+ DV I+ LR K+ D + T G GY A Sbjct: 181 REQIMDHLWGGEFFG-EPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFA 232 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 121/237 (51%), Gaps = 20/237 (8%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN---------QSVDLILLDI 54 I++VEDE V + + QEG+TV V A G ++ ++ DL++LD+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 55 NLPDENGLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRV 113 LP NGL R LR + TV I++++ + DR+VGLE+GADDY+TKP RELV R Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 114 KNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNP 173 + LL R QP R+ G L + D + L+ E+ +L F+ +P Sbjct: 145 RALLRRSQN----QPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHP 200 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 + SR++LL + D +T+DV IR LR K+ A+ L+T G GY L Sbjct: 201 RRVWSRDQLLEKIWGIDFMG-DSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 6/234 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + I+IVED+ L+ + V G E Q++ DLILLD+++P N Sbjct: 6 MANQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLN 65 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R LR+ II+VT +++ ID+++GLE+GADDY+TKP +REL R K ++ R Sbjct: 66 GVEVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRS 125 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D A Q ++ F +NV + +G+ I L+ E+++L+ PG SR Sbjct: 126 DAANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRS 185 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 LL ++ + TV+ I RLR K+ D ++T G GY D+ Sbjct: 186 ELLDVIWGYNFSGYE-HTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNEDI 238 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 10/229 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+D+ + + Y G+ V A G + + DL++LD+ LP +G+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LR V +I++T R+D DRI GLE+GADDYVTKP REL +RV+++L R Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRA--- 173 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + P + R ++ + T R G P+ LT E+++L + PG +R LL Sbjct: 174 NETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELL 233 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAA 227 + D TV V IRRLR K+ D LVT G GY Sbjct: 234 EHVWGWSY--GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDP 280 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 13/232 (5%) Query: 1 MPHH--IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPD 58 M I+IVEDEP L +Y G+ G ++ ++ DL+LLDI LP Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 59 ENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 ++G+ + + LR S + II++T R + IDR++GLE+GADDY+ KP RE+V RVK +L Sbjct: 61 KDGMEVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLR 120 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R + P + L+ + G +KLT +E+ +L ++ P + S Sbjct: 121 RSN-----TPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFS 175 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFL 225 R LL + + E D RT+D IR LR K+ + + + +G GY Sbjct: 176 RNELLDLAIGSQFEGYD-RTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 132/240 (55%), Gaps = 14/240 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM--QNQSVDLILLDINLPD 58 M I+++ED+P + Y Y V +G +I+ + +++DLI+LD+ LPD Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 59 ENGLMLTRALR-----ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRV 113 +G+ + + +R + + V I+++T + D DR++GLEMGADDY++KP E REL+ R+ Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 114 KNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNP 173 + +L R + QA +Q + F + H + D +P++LT ++++L F T+ Sbjct: 121 RAVLRRHEQPNQAD--SQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHA 178 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 G++L+RE+L + + + R +DV I RLR + + ++T G GY A D Sbjct: 179 GKVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 238 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 16/241 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +I++ +DE + Y +EG+ V V +G + + DL++LD+ +P + Sbjct: 1 MGANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + +R+ II++T R + DR++GL MGADDY+TKP RELV+RV N+L R Sbjct: 61 GLEVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRA 120 Query: 121 DLARQAQPHTQD----------NCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFV 170 +A P +D G + + ++LT E+++L Sbjct: 121 GWRSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLA 180 Query: 171 TNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 PG++ SR +LL + + D TV V +RRLR K+ + + T G GY L Sbjct: 181 MYPGKVFSRSQLLNQVWDIAFDG-DTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 Query: 226 A 226 Sbjct: 240 D 240 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 6/231 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I++DE L+ Y E Y V +++ +DL +LDI LPD N Sbjct: 18 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + +R++ T II++T + + D+I GL +GADDYVTKP E+V RVK L R Sbjct: 78 GFSLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRY 137 Query: 121 DLARQAQPHTQ-DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + + + CLNV H DGE + LT E+ +L +++ G ++S Sbjct: 138 KKYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSI 197 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFL 225 E L + + + T+ V IR LR KL+ + T G GY + Sbjct: 198 EELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 6/230 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++V+DE + L++ T GY V ++G I + + L++LD+ +P +G Sbjct: 5 KEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDG 64 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + LR+ S V II++T + DRI GLE+GADDYV KP +EL R++++L R D Sbjct: 65 YGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRAD 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 ++ ++ + ++ E ++LT E+ +L V+ GE SR Sbjct: 125 KITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRAS 184 Query: 182 LLRMLSARRVE-NPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFL 225 +L+ + E + D R VDV I RLR KL DL++T G GY Sbjct: 185 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 7/231 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 + +++V+DE ++ +E Y + +G G E Q +S DL++LD+ LP +G Sbjct: 4 TYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI- 120 + R +RE S V I++++ + + ID+ VG +GADDY+ KP EL +RVK LL R Sbjct: 64 YEVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSF 123 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D + + +N H + G+P+ LT E+E+L +P ++ +RE Sbjct: 124 DKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTRE 183 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 +L + R D T+ V IR+LR K+ D + T G GY + Sbjct: 184 QLFAHMW-RDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKFS 233 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 132/233 (56%), Gaps = 7/233 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 + I++V+D+ +A L+ Y T++G+ V A+ + ++ +S L++LD+ LP E+G Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 Query: 62 LMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L + R LR +S + II+VT + + +DRIVGLE+GADDY+ KP REL+ R++ +L R Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 P ++ F + LN+ + R+ EP+ LT E+ +L A V++P E LSR+ Sbjct: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +L+ + R + R++DV I RLR + D + T G GY D Sbjct: 184 KLMNLARGREYSAME-RSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 7/230 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++I+ED+ ++ + G + G E + + D+I+LD+ LP +G Sbjct: 3 QKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDG 62 Query: 62 LMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L + + LR+ V I+++T RS+ D++ L GADDY+TKP +REL RV + R Sbjct: 63 LEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRY 122 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 ++ + F G CL+ H + + I++T E+++L F+ NPG SR Sbjct: 123 RPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRT 182 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 LL ++ + TV+ I RLR K+ + ++T G GY Sbjct: 183 ELLDLVWGASYSGYE-HTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 12/233 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 +++VEDE + + GY V SG ++ DL++LD+ LP +G Sbjct: 5 KVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDG 64 Query: 62 LMLTRALRERSTVG-IILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L + + +RE II++T + D+I+GLE+GADDY+ KP EL+ R+K +L R Sbjct: 65 LEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRR 124 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D + Y + L+ + + L ++ + ++LT EY +L F+ NPG+ L RE Sbjct: 125 DRYEAGRTG-----YTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRRE 179 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +L + D +T+DV IRRLR K+ + + T G GY + Sbjct: 180 EMLNGIWGEDYFG-DTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 119/236 (50%), Gaps = 12/236 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +++V+DEP L+ Q + V +GA +++N D++LLD+ LP+ +G Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGE 61 Query: 63 MLTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + +R +R+ +I++T + D++ GLEMGADDYV KP RE++ R+ +L R + Sbjct: 62 EVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYE 121 Query: 122 LARQ-----AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 + A P + + ++ ++ + + + +KLT E+E++ V + ++ Sbjct: 122 KSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQV 181 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 LSR++LL+ + R VD+ I LR K+ L T G GY + Sbjct: 182 LSRDQLLQGVWGFDYSGQ-SRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFST 236 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 312 bits (800), Expect = 9e-84, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+IVED+ ++ +EGY + G E Q ++ ++++DI +P +G+ Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R +RE+S V II+++ + + D+I+GL MGADDY+ KP + EL+ RVK + R Sbjct: 65 SMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYY 124 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + ++ Y + +++ +T+ + G+ + LT E ++L F NP + ++ ++ Sbjct: 125 NETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQIY 184 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 + D TV V +RRLR K+ D L+ T G GY L D Sbjct: 185 DSVWGEEFL-SDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 125/233 (53%), Gaps = 12/233 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++VEDE + L + QEG+ V++ A G +I Q+ DLI+LD+ LP + Sbjct: 1 MDSLILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R+++ II++T R D +D+++GLE+GADDY+TKP REL +R+K +L R Sbjct: 61 GWEVMKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 PH Q + +N R + LT E+++L+ NPG++ SR Sbjct: 121 R------PHEQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRL 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +L + E + RT+D I LRHK+ A + T +G GY L A+ Sbjct: 175 HILERVFGDIYEGYE-RTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 HI+I +D P L +Y +E + A G + + + ++LLD+ +P E+G Sbjct: 2 QHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGY 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R +S V +IL+T R + ++I+GL++GADDY+ KP E++ R++ +L R + Sbjct: 62 EVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRR--M 119 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ T +N A +N+ +TL G I LT+ E E + +NP ++ +R+ L Sbjct: 120 TKKENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNL 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLS----ADL-LVTQHGEGYFLAAD 228 L L D RTVD I+RLR KL + + T G GY D Sbjct: 180 LDSLWGFDYFG-DSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVD 229 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 10/233 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ---NQSVDLILLDINLPDENG 61 IV+VEDE ++ +EG+ V V GA E + DLI+LD+ LP+ +G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R +R+ I+++T RS +DR++GLE+GADDY+TKP LREL RV +L R++ Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 122 LARQ-AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + R ++ ++ + G+P+ LT E+++L NPG + SR+ Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSRD 183 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAAD 228 LL + D RTVD I RLR KL A+ +VT G GY Sbjct: 184 YLLHRVWGEDYVGVD-RTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYERP 235 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 14/230 (6%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 ++VED+ ++ E + V V G E+ + +LI+LD+ LP +G + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 66 RALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R LR + II++T +++ D+++GL++GADDY+TKP RE + RV LL R Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 Q D+ F + + + + + LT E+E+L+ N G L RE+L Sbjct: 129 YNQP-----DDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQL 183 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKL---SADL--LVTQHGEGYFLAA 227 L + RT+D I+RLR K+ + T G GY L Sbjct: 184 LEQVWGYEYPGS-TRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEV 232 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 122/233 (52%), Gaps = 9/233 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DEP + Q Y V +G EI+Q VD +++D+ LP + Sbjct: 1 MSKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLD 60 Query: 61 GLMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G+ T+ +R+ + II++T ++ ++D+I+GLE+GADDY+TKP +EL+ R+K +L R Sbjct: 61 GIEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D R D + ++ R ++++ E I+LT E+++L N ++LSR Sbjct: 121 TD--RAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSR 178 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 +++L + R VD+ I LR KL D L+ T G GY + Sbjct: 179 DQILEKVWGYEY-GGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVS 230 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 12/230 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++ +D+P T L+ T EG+ V + G ++ +Q DL++LD+ +P +G Sbjct: 5 RRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGF 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + +R S V I+L+T R D +D++VG +GADDYVTKP +L ELV+RV +L R+ Sbjct: 65 AVCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM-- 122 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + RF +N S T+ +LT E+++L ++PG +RE L Sbjct: 123 ----PTLPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESL 178 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 L + D TV V IRRLR K+ + + T G GY Sbjct: 179 LARVWHGDA-PTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDP 227 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 12/231 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DEP + L+ Y QEG+ V G + + + DL++LD+ +P+ Sbjct: 1 MS-TILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMG 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G RA + S +I++T + + D+I+GLE+GADDYVTKP +REL+ R++ +L R Sbjct: 60 GYEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRT 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 Q + + R A L+ + T+ G + LT +E+ +L + PG++ SR Sbjct: 120 Q-----QTPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRL 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 LL +S E + RT+DV IR LR K+ AD + T +G GY A Sbjct: 175 DLLDRVSGDAFEGSE-RTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 8/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I++DE L+ ++G TV +G E + + DLI+LDI +PD + Sbjct: 1 MS-KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDID 58 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + R +R+ I+ ++ + +DRI G +G DDYV KP L+EL+ R+ L R Sbjct: 59 GYEVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRRE 118 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A + F +++ + G PI LT+ E+++L +PG++ S+E Sbjct: 119 KRAILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 ++ + E D TV I+ +R K+ + + T G GY Sbjct: 179 QIYEKVWGFDAEG-DTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEK 229 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IVEDE L +EG+ +V G + D++LLD+ LP +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + LR RS+V +I+VT R ID++VGLE+GADDYVTKP REL+ R++ +L R A Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR--GAD 121 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 D ++V RH + +GEPI L E+++L + N G +L+R +L+ Sbjct: 122 NDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLID 181 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAA 227 + D +T+DV ++RLR K+ D LVT G GY L Sbjct: 182 RVWGADYVG-DTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 10/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS-VDLILLDINLPDE 59 M H ++++EDE + L++Y GY V +G ++ + +ILLDI LPD Sbjct: 1 MMHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G L + +RE S V ++++T R + D+++G E+GADDYV KP RE+V RVK +L R Sbjct: 61 SGWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 ++ + G ++V + DG+ I+LT E+++L + N G+++SR Sbjct: 121 TYGSQDDGKT------EYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSR 174 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAAD 228 E+ L + DLRTVD I++LR KL +L+ T G GY L D Sbjct: 175 EKCLNEVWGYDFYG-DLRTVDTHIKQLREKLGEKRNLIKTVWGIGYKLEGD 224 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 9/229 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I ++ED+ L F +EG+ V +G E ++ + D+++LD+ +P+ +GL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 65 TRALRERST---VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + +R + +I++T +S ID+IVGLE+GADDYVTKP REL+ RVK LL R Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + Y+F ++ + + G+P+ LT ++++L+A V + G++LSR+ Sbjct: 124 SLHFPTAKPE---YKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDY 180 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAAD 228 ++ + A + D RT+DV I++LR L + + T G GY + Sbjct: 181 IIEHVWAWDKDVYD-RTIDVHIKKLRELLKEYGNCIKTIRGVGYKWECE 228 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++VED+ V L F + G+ V+ + G E+ + DLI+LD+ LP +G Sbjct: 3 TILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFS 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + RA+ + +TV I+L+T D RI GLE+GA DYV KP + EL+ RV+ +L Sbjct: 63 VCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR---WN 119 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + N L+ + + I+L+ E+++L + N G LSR+ LL Sbjct: 120 ERQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLL 179 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 + + RT+DV +R LR KL D L+ T G GY Sbjct: 180 ERVWGSDFLGSN-RTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPAT 230 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 8/229 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IV+D+ +A L Y GY VS SG G+ E ++ S +++LDI +P ++GL + Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R LR S V +I++T + + DRIVGLE+GADDY++KP REL+ R+K +L R Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGPE 126 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 P++ AG L+V+ LE +G+ ++L+ E+++L A + NPG ++R+ L+ Sbjct: 127 NNNPNSGQ--INVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMT 184 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAAD 228 + + D R++DV I +LR + T G GY ++ Sbjct: 185 SVWGKDFNAFD-RSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 119/240 (49%), Gaps = 18/240 (7%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP+ I+IVED+ ++ +E +T VT G I Q Q DLI+LD+ LP + Sbjct: 11 MPN-ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLD 69 Query: 61 GLMLTRALRER---STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + +R++ I+++T + + IDRI+GL GADDY+ KP RELV RV+ LL Sbjct: 70 GLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALL 129 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLER----DGEPIKLTRAEYEMLVAFVTNP 173 R Q YR + +++ +H R E ++LT E+ +L F++ P Sbjct: 130 RRQLRQGQPV----GQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYP 185 Query: 174 GEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 G + +R +L+ L D R VD IRRLR K+ D + T G GY Sbjct: 186 GRVWNRTQLIEKLWGNDFFG-DERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDP 244 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 9/232 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++++IVEDE ++ Y +GY V ++G EI++NQ++ L ++DI +P +G+ Sbjct: 4 YNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGI 63 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + LRE +I++T +S+ +D+I+GL +GADDYVTKP EL+ RV + L R Sbjct: 64 TMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSK 123 Query: 123 ARQ--AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + N + G LN + DGE IK+T E+++L + NPG + S E Sbjct: 124 YLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAE 183 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 + + N D TV V +R +R K+ L G GY + Sbjct: 184 EIYEKVWNEEAINTD--TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIEK 233 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IV+DE + L+ Y +EGY VS G ++ + DL++LD+ LP ++G Sbjct: 7 KRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGW 66 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +++ + +I++T R D D + G EMGADDY+TKP + L+ RVK+LL + + Sbjct: 67 SILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 ++ +N + H++ I+L EY++LV + N LSRE+L Sbjct: 127 MVES-------IIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKL 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLA 226 L + D RT+D I+ LR K+ + + T G GY L Sbjct: 180 LNEVWGYDFLG-DDRTIDTHIKNLRKKIGKNAIKTIRGIGYKLD 222 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 139/238 (58%), Gaps = 11/238 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P HI++V+D+P +A L Y + G+ A G+ + +++ DL++LD+ LP ++G Sbjct: 4 PEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L R LR RS + +I++T D DRI+GLE+GADDYV KP RELV R++ +L R Sbjct: 64 LTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRAR 123 Query: 122 LARQ----AQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 + A+P RFAG+ L+ RH + DG + L+ AEY +L F+ P + Sbjct: 124 ALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRV 183 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 +SR++LL + R E D R++DVL+ RLR +L ++ T G+GY+LA DV Sbjct: 184 MSRDQLLDLTQGRAAEAFD-RSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATDV 240 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+I +D + +Y + T G E + DL++LD+ +P G Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + +R+ S V II++T + + IDRIVGLE+GADDY+ KP RE+V R+K + R+ Sbjct: 65 EVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGN 124 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 A + F + +++ ++ + + E I +T E ++L TN G +LSRE + Sbjct: 125 AN-IDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEI 183 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD----LLVTQHGEGYFLAA 227 L + D R VD I+R+R K+ + + T +G GY Sbjct: 184 LDKVWGYDYFG-DTRVVDTQIKRIRKKIPEEGEKWSIKTVYGIGYKFEV 231 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++I+IV+DE + L+ EGY V G +I++ + V L++LD+ +PD + Sbjct: 1 MNNNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + +RER + I++++ + + ID+I G+ GADDYV KP EL VR++ L R Sbjct: 61 GFEVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRT 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + D+ R ++ +H + + LT E+E+L TN G + S E Sbjct: 121 YFLNT-KIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAE 179 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAA 227 + + + TV V + RLR KL ++ T G GY + Sbjct: 180 EIFEKVWKEKYY-QSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIEK 230 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 +++V+DE + L+ Y T+EG+ V +G E+ N D+ILLD+ LPD +G Sbjct: 13 KLQVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDG 72 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + +RE+ V I+++T RS+ D++ GL +GADDY+TKP E EL+ RV +L+ R Sbjct: 73 WQVCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSA 132 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + + F + + ++ T+ E+++ ++ + SRE Sbjct: 133 ITQSIRRQEAA--LEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREE 190 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHK-----LSADLLVTQHGEGYFLAA 227 L+ ++ E ++R VD I+ +R K L + + T G GY Sbjct: 191 LVNLIWGDEYEG-EVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNG 240 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 7 IVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTR 66 +VEDEP + EGYTV G E+ + + D+++LD+ LP +GL + R Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 67 ALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQ- 125 ++ V ++++T R D D++VGL +GADDY+TKP +RELV RV L+ R++ AR Sbjct: 82 RVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARAL 141 Query: 126 -AQPHTQDNCYRF----AGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 P RF ++ ++ + R G + LT E+++LV +P +L+RE Sbjct: 142 VGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTRE 201 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAA 227 +LL + + RTVD ++ LR KL ADL+ T HG GY Sbjct: 202 KLLEEVWDW-ADASGTRTVDSHVKALRRKLGADLVRTVHGVGYAFEP 247 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 11/232 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P ++I+ED+ +Q Y + GY+ + G E+ ++S D I+LDI LP NG Sbjct: 4 PIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNG 63 Query: 62 LMLTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + + +R E V II++TG+ + D I GL +GADDY+ KP + EL+ RVK +L R Sbjct: 64 WEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRT 123 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 L+ ++ + +F +++ + + + E +++ E E+ NP ++L+R+ Sbjct: 124 ILS-----ESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQ 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL----LVTQHGEGYFLAAD 228 +LL + D RTVDV I+R+R KL+ +VT G GY + Sbjct: 179 QLLDRVWGYEFNG-DPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFEEN 229 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 13/227 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++VEDE ++ EGYTV+V G + + DLILLD LP +GL + Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 65 TRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + LR+ S V IIL+T + D DR+ GL+ GADDY+ KP L EL+ RV+ L R Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNH-- 123 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + +F LN + + R I+LT E+++L +++P ++LSR+++L Sbjct: 124 -----EEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQIL 178 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD----LLVTQHGEGYFLA 226 + D ++V +R LR KL A+ L+ T G GY L Sbjct: 179 ERVWGYDFMG-DSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVLR 224 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 8/231 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 ++VEDE A + SY + GY V++ G ++ + D+++LD+ LP +G+ Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL- 122 + R LR S ++++T RSD +D ++GL +GADDY+TKP REL+ R++ +L R Sbjct: 125 VCRRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPK 184 Query: 123 -ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 ++A T F ++V + E + LTR E+++L P + SR + Sbjct: 185 TGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQ 244 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 L+ + D VDV I LR KL D L T G GY + Sbjct: 245 LIDRVWGEDWVG-DEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMGT 294 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 6/233 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+I++DE ++ Y ++G+ V +G+ E+ + + DLI+LD+ LPD NG Sbjct: 3 SEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L + LR+ + I+ ++ + +D+I+GL +G DDY+TKP ELV R+ L R Sbjct: 63 LELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNR 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + AG ++ + +TL D +P+ LT E+E+L +P + S + Sbjct: 123 ILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQ 182 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L + D RTV V I LR K+ D L+VT G GY L Sbjct: 183 LYDHIWGVDNIG-DTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDTTA 234 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 12/233 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P ++IV+DE A ++ + EGY V G ++++ VD +LLD+ +P +G Sbjct: 4 PTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R +RE V ++ +T R + D+I GL +GADD++ K E+V R+K +L R Sbjct: 64 YDVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYR 123 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A F ++V H + DG+P++LT E+E+L F +P ++ +RE+ Sbjct: 124 RGEPAPRA----VLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQ 179 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L + L E D TV V I RLR K+ D +VT G GY + Sbjct: 180 LFQRLWG---EFGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEA 229 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 8/231 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+IV+D+ + Y T GY V+ G EI+Q+ ++LD+ +P +G Sbjct: 10 KIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDG 69 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + LR++S + ++++T + DRIVGLEMGADDY+ K REL+ R++ + R Sbjct: 70 FEMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR 129 Query: 122 --LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + R + +DN +++ T G+P+ LT EY++L+ P +LSR Sbjct: 130 LSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSR 189 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 ++LL ++ R + D R+VDV I LR KL D + T GY Sbjct: 190 DQLLDAVAGRSYDVFD-RSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 123/233 (52%), Gaps = 11/233 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M H IV++EDEP L + GY V G +++Q++ DL+LLD+ LP + Sbjct: 1 MAHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMS 60 Query: 61 GLMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G + +A++ E + + II++T R D +DRI+G E+GADDYV KP REL++R+K +L Sbjct: 61 GTDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R H Q + G + +TL DG LT E+ + FV N G++L Sbjct: 121 RRNVNILPKVAHWQRD-----GLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVL 175 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAAD 228 SRE+LL E RTVD +RRLR KL D L T G GY + + Sbjct: 176 SREQLLSNAWGYEFEGY-SRTVDTHVRRLRKKLGPYADWLETVRGIGYRMKRE 227 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 122/229 (53%), Gaps = 7/229 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++V+D+P Q ++Y ++EG+ ++ A+GA ++ + DLI+LD+ LPD +G + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI-DLA 123 R +R ++ V I+ ++GR D ID+I+G +G DDY+TKP LV +VK+ + R +L+ Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + F ++ + R+G+PI L E+++L N G + S E L Sbjct: 126 GSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLF 185 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 + + D+RTV V I LR K+ + ++T G GY Sbjct: 186 DSIWGKDSFG-DIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 9/224 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++V+DEP + ++ Y E TV G +++ DL+LLD+ +P +G Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + +RE S V +I++T R DR+ GL MGADDY+ KP + REL RV+ +L R Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQV 127 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 +A R + + T G P+ LT E+++L +PG++ SRE+LL Sbjct: 128 EANVP-----IRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLD 182 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLA 226 + + D RTVD I+ LR KL L++T G GY A Sbjct: 183 RIWGPDFQG-DARTVDAHIKNLRDKLGEGAGLILTVWGVGYRFA 225 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 11/228 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+++ED+ ++ Y +E + V A G + L+L+D+ LP +G L Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 +R S V II+V+ + D++ +GADDYVTKP EL RVK + R + + Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 Q++ +F +++ + GE I LT E+E+L+ +PG + ++E L Sbjct: 123 P----QQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYA 178 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAA 227 + D RTV V ++ +RHKL + T G GY Sbjct: 179 AVWNGD--GFDSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIG 224 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 115/232 (49%), Gaps = 6/232 (2%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++VED L + GY V A G + Q DL++LD LP +GL Sbjct: 6 PTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGL 65 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R+ + ++++T RS+ D +VGLE+GADDY+TKP +REL+ RV+ LL R Sbjct: 66 EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQR 125 Query: 123 AR---QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + QA R+ L+ H + + + LT E+ +L + NPG SR Sbjct: 126 IQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSR 185 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAADV 229 LL + + D R+VD + RLR KL+ D + T G GY L A+ Sbjct: 186 NYLLDTIWGQSYVGGD-RSVDNAMLRLRKKLADFGDAIETVWGLGYRLQAEA 236 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 8/231 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++V+DE +++Y ++G+ V G +I N+++ LI+LD+ LP G Sbjct: 4 KFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + +R S+V II++T +++ ++I G+ MGADDY+TKP +RELVVRV+ LL R Sbjct: 64 EEVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRA- 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R P + +++ + +++ G + LT E+++L F++NP ++ SRE+ Sbjct: 123 -YRDFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREK 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 L+ E D RTVD I+ +R K+ ++ + T +G GY Sbjct: 182 LVEKAFGANYEGFD-RTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIP 231 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 12/231 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED+P L+ EG+ V G + + S D+ILLD+ LP + Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + + +RE S V II++T + + D++VG + GADDY+TKP EL+ R+K LL R Sbjct: 61 GMEVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRT 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERD--GEPIKLTRAEYEMLVAFVTNPGEILS 178 + + F +N S + + RD I+L++ E+E+L V N G +LS Sbjct: 121 KKS-----VVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLS 175 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFL 225 R+++L + D +D+ I+ LR K+ + T G G+ Sbjct: 176 RDKILEEVWGFDYIGND-NILDLYIKYLRDKIDRPYERKFIQTVRGIGFIF 225 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 9/234 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++ +D + L+ T EGY V G + ++ + S+DLI+LDI +P+ N Sbjct: 1 MQTRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMN 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G LRE S V I+ +T + D+ +G GADDY+ KP EL RVK LL R Sbjct: 60 GYQTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRY 119 Query: 121 DLARQAQPHT---QDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 + + + T + G L ++ E +G+ ++LT E+ +L + NP +I Sbjct: 120 QVYKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIF 179 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 S E+L T+ V IR LR K+ D + T G+GY Sbjct: 180 SAEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IV+DEP ++S F +EG+ V T SG ++N++ DL++LDI LP +G Sbjct: 2 QRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGF 61 Query: 63 MLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R +R +I++T R+D +DR+VGLE+GADDYV KP RELV RV+ LL R Sbjct: 62 GVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTA 121 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A + + D +G L+ +R + L E+++L ++PG++ +RE Sbjct: 122 EASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREV 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFL 225 LL + E D RTVDV IRRLR KL ++L+ T+ G GY Sbjct: 182 LLGQVWGYD-EYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 2/227 (0%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+I+EDE L +EG+ + +G+ ++ DL++LD LPD +G Sbjct: 3 KTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDRSG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + + + + + I+++T RSD D+I+GLE+GADDY+TKP +LRE+VVR++ +L R+ Sbjct: 63 LDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLA 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A+ + F ++ + + + GE + LT E+++L+A + G I +R Sbjct: 123 QAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAE 182 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLS-ADLLVTQHGEGYFLAA 227 LL + D+RTVD I+RLR KL ADL+ T G GY Sbjct: 183 LLESVWGYDFPG-DMRTVDTHIQRLRKKLDAADLITTVFGIGYKFEK 228 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 7/230 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+IVED+ + +EGY T GA E ++ L++LDI LP G Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +RE+ +++++ + + D+I+GL +GADDY+ KP + EL RVK L R Sbjct: 66 VLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLNF 125 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + R +NV + ++ + LT E+E+L F+ NP ++ ++ +L Sbjct: 126 SW-ETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLF 184 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 + + N D TV V IRRLR K+ D + T G GY L + Sbjct: 185 KSIWGENYIN-DENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 3/229 (1%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P +V++EDEP + T EG+ VS G + D+++LD+ LP +G Sbjct: 14 PVRVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDG 73 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R ++ V ++++T R D D +VGL +GADDY+TKP +RELV R+K LL R+ Sbjct: 74 LEVCRRIQADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVR 133 Query: 122 LARQAQPHTQD--NCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 A P + + ++ + + R G P LT E+++L+ PG +L+R Sbjct: 134 RAAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTR 193 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAAD 228 E+LL + V+ RTVD ++ LR KL +DL+ T HG GY L Sbjct: 194 EQLLADVWDW-VDATGTRTVDSHVKALRRKLGSDLVRTVHGVGYALEIP 241 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 7/233 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+DEP L+ QE + V GA + Q D I+LD+ LP +G+ Sbjct: 2 KTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGI 61 Query: 63 MLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 +T+ +RE I+++T + + D+IVGLE+GADDYVTKP RE++ R++ + R Sbjct: 62 AVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTT 121 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + ++ + ++ + LT E+E+LV F+ ++ SRE+ Sbjct: 122 QPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREK 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 LL + + R VD+ + LR K+ + L T G GY L Sbjct: 182 LLNAVWGFDY-PAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPA 233 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 7/229 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED+ Q + + + EGY V G + + S DL++LDI +P+ + Sbjct: 1 MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R+ S+V II +T +D D++ G ++ DDY+TKP L+ RV+ +L R Sbjct: 61 GYGVCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D F L+++ + E DGEPI+LT E+ +L A + ++++RE Sbjct: 121 ------NKTINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITRE 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADV 229 LL + D R VD I+ +R K+S + T G GY L D+ Sbjct: 175 GLLDSIWGYDYYG-DTRIVDAHIKNIRKKISLPYIKTVKGIGYTLEKDI 222 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 + I+I +DE L Y EGY A+G + +I+ + VDL+LLD+ +P+ +G Sbjct: 5 QYTILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDG 64 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR + +I+VT +SD DR+ GL GADDY+ KP +EL+ R++ + R Sbjct: 65 MEALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNY 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 ++ +N++ + DGE + LTR E+++LV F+ +P ++ +RE+ Sbjct: 125 GYND---DESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQ 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLA 226 LL + RTVD ++ +R K+ + D T +G GY L Sbjct: 182 LLDHVWGVNYTTGGHRTVDTHMKTMRFKMGSGGDYFRTVYGVGYVLE 228 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 122/233 (52%), Gaps = 11/233 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++++DE + L+SY EG+ V +G + ++ DLILLDI +P+ Sbjct: 1 MAQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL RA + + IIL+T + + D+I+GLE+GADDY+TKP RE++ RV+ +L R Sbjct: 61 GLDFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + Q + R L S TL + + LT +E+E+L + +PG + SR Sbjct: 121 Y-----KAQPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRL 175 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 LL S + E + RT+DV IR LR K+ D + T +G GY A Sbjct: 176 DLLDRTSGQAYEGYE-RTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFARP 227 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 129/232 (55%), Gaps = 12/232 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++I++DE + L+ F QEG+ VSV G + ++ S D I+LD+ LP +G Sbjct: 16 TMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDG 75 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + L +R++S V II++T + ID+I+GLE+GADDY+TKP REL+ R++ L+ R + Sbjct: 76 ITLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQE 135 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + + Y+F +++ T+ R E I LT E+++LV + N G + RE Sbjct: 136 -----KGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREE 190 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAAD 228 + +++ D RT+DV ++ LR KL ++ T+ G GY+ D Sbjct: 191 IFQLVWGEPCY--DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 9/228 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 ++IVEDE L +EG+ +V G D++LLD+ LP +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + LR RS+V +I+VT R ID++VGLE+GADDYVTKP REL+ R++ +L R Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR---GG 120 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 D ++V RH + +G+ I L E+++L + N G +L+R +L+ Sbjct: 121 DDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLID 180 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAA 227 + D +T+DV ++RLR K+ AD LVT G GY L Sbjct: 181 RVWGADYVG-DTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 8/228 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P +++V+DE + SY + G+ +G + + S D+++LD+ LP+ +G Sbjct: 40 PGRVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDG 99 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R +R S I+++T R D+I GL +GADDY+TKP +RELV RV +L R Sbjct: 100 LEVCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRR-- 157 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 P L+ H + ++LTR E+E+LVA PG++L+R Sbjct: 158 PRTSTTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHD 217 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYF 224 L+ + D R VDV I LR KL D + T G GY Sbjct: 218 LVTEVWDTTWVG-DERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 13/231 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEG-YTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M IVI+ED+ ++ QEG + V++T +G + +LILLDINLP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 60 NGLMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNL 116 NG + R LR + V II++T R+D D+I GL +GADDY+TKP +REL+ R+ + Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 117 LWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 L R + T + Y ++ + + G+ I LTR E+ +L + G + Sbjct: 121 LRRTEG-------TPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRV 173 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-LLVTQHGEGYFLA 226 L+RE LL + + + RT+DV IRR+R KL D + T G GY Sbjct: 174 LTREYLLDRVWGIDYDG-ETRTLDVHIRRVRQKLGIDGYIETAVGIGYRFV 223 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 127/233 (54%), Gaps = 7/233 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++VED+ T++ + Y G VS A G + IM + VDLI++D+ LPDE+GL Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L R +R RS V II++T R + IDRIVGLEMGADDY+ KP REL+ R+ +L R Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A A + C+ F G+ ++ L G + LT AE+++L AF G +LSRE Sbjct: 135 ALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSREV 194 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAADV 229 LL + R++DVL+ R+R K+ AD + T GY V Sbjct: 195 LLELTQGPNC-GSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTPVV 246 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 12/230 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+D+ L+ + + + V ++ E Q +VD ++LDI +P ENG Sbjct: 4 KTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGF 63 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R +R +S V I+ ++ RS +D+I GL +G DDY+ K E+V RVK +L R Sbjct: 64 AFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRS-- 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + F LN++ L DG+ + LT EYE+L F+ +P + S ++L Sbjct: 122 --ASNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQL 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 L L D TV V + RLR K+ A+ +V G GY Sbjct: 180 LDKLWDG---VGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 4/230 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP+ I++ +DE ++ L+ Y GY V A G +++ Q VD+ LLDI +P+ + Sbjct: 1 MPYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + LRE S V +I+V+ + ++I+GL +GADDY+ KP E V RV + R+ Sbjct: 61 GYQVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRL 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 AQP R L+ L +GEP++LT EY ++ F+ +PG + +++ Sbjct: 121 KGMAAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQ 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAA 227 ++ + +V V + RLR KL D + T G GY L Sbjct: 181 QIYECGWDEDYVAAE-NSVMVCMSRLRSKLGDDGQEAIKTIRGLGYRLEK 229 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 120/238 (50%), Gaps = 21/238 (8%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM----------QNQSVDLILLD 53 +I+++EDE + + + +EGY V + G ++ + V LI+LD Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 54 INLPDENGLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVR 112 + LP NGL L R +R + TV I++++ + IDR+VGLE+GADDY+ KP +RE++ R Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 113 VKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTN 172 + LL R + + P RF CL GE + L+ EY++L F+ + Sbjct: 143 CRALLRRTRIQQATLPP----VLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRH 198 Query: 173 PGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 P + RE+LL + D +TVDV IR LR K+ D ++T G GY Sbjct: 199 PRRVWPREQLLDQVWGPDFVG-DSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 117/230 (50%), Gaps = 13/230 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+D+ L +EGY + + G Q D++LLD+ LP NGL Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R +STV I+++T + D ID + GLE GADDYVTKP + ELV RV+ L R Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR---- 132 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 Q ++V H + RDG PI LT E+++LVA P ++ +RE LL Sbjct: 133 ---GETGQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLL 189 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAAD 228 + R D R V+V ++RLR K+ ++++T G GY Sbjct: 190 EQVWGYRH-AADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYKAGPP 238 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 6/231 (2%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 ++I +DE L Y ++G+ + +G +I+ N VD+ ++DI +P +G Sbjct: 3 RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGYH 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 L R +RE + +I+++ +S+ D+I+GL++GADDY+TKP E++ RVK L R + + Sbjct: 63 LVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNKS 122 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + LN++ TL ++ + LT EY++L + N G++ +++++ Sbjct: 123 MSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQIF 182 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 + D + V I LR K+ D + T G GY L +++ Sbjct: 183 EYVWEEPFYG-DDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSNI 232 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 15/236 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + +VED+ ++ + G+ V +G G+ + +L LLDI +P + Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 61 GLMLTRALRERSTV---GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + R +R ++ +I +T ++ D+I GL++GADDY+ KP REL+ R+K +L Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R + ++ TL G + T E+ +L +PG + Sbjct: 121 RRFERPLPPA------VVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVF 174 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 +R++LL + R R+VDV +RR+R K+ + L T G GY Sbjct: 175 TRDQLLDAVW-RETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEVP 229 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 7/229 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++I++DE ++ Y EGY V +G+ I+ + + +++LD+ +P +G Sbjct: 3 NVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + +R+ + II+++ +S +D+I GL GADDY+ KP EL+ RVK+ + R Sbjct: 63 VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122 Query: 124 RQAQPHTQD-NCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + D + F +N H + G+ +KLT EYE+L+ N G + S E + Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAEDI 182 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 + + + + TV V I RLR K+ + + T G GY + Sbjct: 183 FKEVWKEKYFEGN-NTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIE 230 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 6/230 (2%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 + I+IV+D+ + + QEG+ V +G +I+ N S+ L +LDI +P +G Sbjct: 18 KNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDG 77 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + L R +RE+ ++ I+ ++ +S +D+++G GADDY+ KP E + RVK L R Sbjct: 78 IELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYT 137 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 Q + G ++ T+ GE I LT+ EY++L + + E Sbjct: 138 YFNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEE 197 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 + + R TV V I RLR+K+ + + G GY + Sbjct: 198 IYESVWKERAY-ESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+D+P +++ QE + V S + E ++N DLI+LDI LPD +GL Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 64 LTRAL-RERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + L R+ + +I +T R +D I+GLE+GADDY+TKP R L+ R+K + R ++ Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + N + ++++ +++ +DG+ +L R E+E+L + NPG++ +R+ + Sbjct: 122 GPK-----DRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEI 176 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAAD 228 L + D RTVDV I +LR K+ ++ + T G GY L Sbjct: 177 LDRVWGMDFFG-DFRTVDVHISKLREKIGSEFIKTVRGVGYKLVIP 221 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 14/234 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++VEDE + + Q G+ + DLILLD LP + Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLMLTRALRERS---TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G+ + L+ S + ++++T R + DR+ GLE GADDY+TKP +ELV R+K ++ Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 RI P + G L+ + H + EP+++ E+++L F+T+P + Sbjct: 121 RRI------SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVY 174 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS----ADLLVTQHGEGYFLAA 227 SRE+LL + V D RTVDV IRRLR L ++ T G GY + Sbjct: 175 SREQLLNHVWGTNVYVED-RTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 11/230 (4%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 ++V+D+ + + Y G+ V G ++ VD+++LD+ LP+ +G + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 66 RALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 +R R T + +I++T D DRI+GL+ GADDY+ KP RELV RV+ +L R L Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFL-- 119 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 P + R G ++V++ ++ + + LT E+++L ++P ++ SRE LL Sbjct: 120 --APADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLD 177 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAADV 229 + + D RTVDV + RLR KL A + L T G+GY Sbjct: 178 RVWGLDFDG-DSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVKA 226 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 126/231 (54%), Gaps = 7/231 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 HI IV+D P + + Y TQEGY ++V A G LR ++ DLI+LD+ +P E+G Sbjct: 4 SQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L R +R RS ++ ++ R++ +D I+GLEMG DDY+ KP REL+ RVK LL R Sbjct: 64 LSLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRAT 123 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A + + RF + LN L DG + L+ E+ +L A + PGEI++R+ Sbjct: 124 PASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRD 183 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 LL +S R E D R++D I RLR K+ D + T G GY Sbjct: 184 ELLNKVSGRASEPFD-RSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 9/230 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + ++I+EDE L++Y +EGY V + G E+ + Q+ D+++LD+ LP+ +G Sbjct: 8 YTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGE 67 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R+ I+++T + ++I GL +GADDYV KP RE++ R+K +L R+ Sbjct: 68 EIARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGK 127 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 Q ++ + G I LT+ E+++L P ++ SRE L Sbjct: 128 EP---GRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENL 184 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + E D RT+D I+ LR K+ + + T G GY Sbjct: 185 ADRIYGYLWEG-DSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQFGK 233 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 11/229 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+D+ + ++ Y + GY V + G + + DL++LD+ LP GL Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LRER V ++++T + DR+VGLE GADDYV KP RELV+RV ++L R + Sbjct: 70 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 129 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + A + L++ DG + LT E+++LV + +PG SR LL Sbjct: 130 QPA----EGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELL 185 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAA 227 + D TV V +RRLR K+ D + T G GY Sbjct: 186 EQVWGWSF--GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+++ED+ +A ++ T +G+ V SGA E+ D++L+D+ LPD +G Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R LR S V II+VT R+D D + GLE GADDYVTKP E++EL R++ LL R Sbjct: 79 ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSR- 137 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + + R+GE + LTR E+ +L + P + SRE+L Sbjct: 138 ---SAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQL 194 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAA 227 L + D R VDV +RRLR K+ D LVT G GY + Sbjct: 195 LERVWGYDYFG-DGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 1 MP-HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M I++VED+ ++ Y +EG+ VS G E DL+LLD+ LP Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + + +RE S II++T + D +++ GL +GADDYVTKP E+ EL+ R+ +L R Sbjct: 61 DGYQVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 I+ + + N + ++ + + + I + R E ++L + P ++ R Sbjct: 121 IEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKR 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 E L+ + E D R +D+ I+RLR +L + + T G GY + Sbjct: 181 EELIEGIWGWDFEGED-RVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVE 233 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 8/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++I+ED+ + Y + Y V G I+QN + L+LLDI LP Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R S II ++ + D D++ GL+ GADDY+TKP + EL R+K L R Sbjct: 61 GYEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + A + + +++ + + G + L E ++L+ V N + S E Sbjct: 121 KMN--ANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 ++ + DL+TV V I LR K+ + L+ T G GY + Sbjct: 179 KIYDQIWGIDHCG-DLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFST 229 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 10/235 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-NQSVDLILLDINLPDEN 60 I++V+D+ ++ + EGY V I++ + + L +LDI +P + Sbjct: 24 KAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMD 83 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + + +RE S + +I+++ +S +D+IVGL GADDYVTKP EL RVK L R Sbjct: 84 GLSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRF 143 Query: 121 DLARQAQPH---TQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 Q + D +N S + + KLT EY++L +NPG + Sbjct: 144 TEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVF 203 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 S + + + + + TV V IRRLR K+ A ++ T G GY + Sbjct: 204 STDDIFTRVWNEKAFEGN-NTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIEK 257 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 7/232 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+D+ + LQ + +G+ V + ++Q + LI+LD LP E+GL Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 63 MLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR+ + II++T R DRI GLE GADDY+ KP EL+ R++ +L R Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQV 140 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 P Q F + L++S TL R+G+ + LT E+ +L A V +P E L+R++ Sbjct: 141 REVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDK 200 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L+ + R R++DV + RLR + + + T G GY D Sbjct: 201 LMNLARGREW-GAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPD 251 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 118/233 (50%), Gaps = 8/233 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P I+IVED+ L + E Y V +A GA +++ + D ++LD+ LP +G Sbjct: 4 PKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDG 63 Query: 62 LMLTRALRE-RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L + R R II+ + RS + RI+GLE+GADDY+ KP + ELV RVK LL R+ Sbjct: 64 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D + AG ++ DG + LT E+++L F +PG++ SR Sbjct: 124 DALAR-DSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 LL + + E + TV+ I RLR K+ AD ++T G GY LAA Sbjct: 183 DLLNAVWGYQHEGYE-HTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAP 234 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 13/235 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+I +D+ + L+ Y EGY V GA ++ +DL+LLDI +P +G + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 R +RE S + +I+V+ + D+I+GL++GADDY+TKP E + RV++ L R Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 125 QAQPHTQD---------NCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 L++ L R EP+ LT E+ ML F+++PG Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPGR 190 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFLAA 227 + +++++ V V I +LR KLS D + T G GY + A Sbjct: 191 VFTKQQIFEEGWGEEYVASGNN-VMVGISKLRAKLSDDPGAYIATVRGLGYRMEA 244 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 302 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P I IVEDE LQ EG+ + +G E + + DL+LLD+ LP +G Sbjct: 4 PVRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + + + +RE S++ II++T + + D++ GL++GADDY+TKP + EL+ R++N L + Sbjct: 64 MTICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHV 123 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 P + + + R+ +E DGE + LT+ EY +L + N +L+R++ Sbjct: 124 PDNGGVPL--EERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQ 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA----DLLVTQHGEGY 223 +L + D VDV IR LR KL + T G GY Sbjct: 182 ILEKVWGYDYSG-DTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGY 226 >UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP1_OCEIH Length = 227 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 3/228 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M HI +VED+ Q + +Y +EGY ++ + ++ +N D+ +LDI LP + Sbjct: 1 MTVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + +R S V II+++ + + ID+I+GLE+G DDY+TKP REL+ RVK L R Sbjct: 61 GYEFCKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R Q +++ + + + + +GE + T EY+ML+ NP SRE Sbjct: 121 TSHR--QDEIEEDRVKVDQLLVYKNERRVFFEGEEFETTTKEYDMLLLLAENPNRAFSRE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAAD 228 LL + D R VD LI+R+R K+ L T G GY L D Sbjct: 179 ELLMKIWGNDYFGSD-RAVDDLIKRIRKKMGNIPLETVWGFGYRLRKD 225 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 5/230 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M H ++++EDEP L TQEGY +V GA + ++ DLI+LDI LP N Sbjct: 1 MSHKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLN 60 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G + LR+ II++T R+ + + GL+ GADDY+TKP + EL+ RV +L R Sbjct: 61 GFEILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 T + + ++ + +GE + L E+E+L+ V PG +++R Sbjct: 121 TQQDDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITR 180 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS---ADLLVTQHGEGYFLA 226 + L+ ++ RTVDV + LR KL + + + G GY L Sbjct: 181 DDLMNVVWGFDYIGG-QRTVDVHVSSLRKKLELGQSVQIESIRGVGYKLV 229 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 14/233 (6%) Query: 1 MPHH---IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLP 57 M H ++I+ED+P +Q Y + GY V G E D I LDI LP Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 58 DENGLMLTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNL 116 +G L + +R + + II++TG+ + D+I GL++GADDYV KP + ELV R+K + Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120 Query: 117 LWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 + R DL +D G ++ + + I + E ++L + P ++ Sbjct: 121 MRRADLLN-----DEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQV 175 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKL-SAD---LLVTQHGEGYFL 225 +R++LL + E D RT+DV I+R+R KL AD + T G GY Sbjct: 176 FTRQQLLDQIWGYAFEG-DPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKF 227 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 13/229 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+D+ + +G+ A G E+ ++ DL+LLD+ LP + Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + R +R S V I+++T +SD D + GLE GADDYV KP + ELV RV+ L Sbjct: 90 GIEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR-- 147 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R A ++V+ H + R GE I LT E+++LVA P ++ +RE Sbjct: 148 -----PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRE 202 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYF 224 LL + R D R V+V ++RLR K+ D ++T G GY Sbjct: 203 LLLEQVWGYRH-AADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 10/234 (4%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M + I+I +D+ + QEGY V G ++ D++++DI +P Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +GL ++ ++ + V II+++ + D +D+IVG +MG DDY TKP EL +RVK +L R Sbjct: 61 DGLEASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + + + + + S + G+ + LT E++ML ++P +I SR Sbjct: 121 S---KAVPEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSR 177 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAAD 228 +LL + E D TV V IRRLR K+ +L+ T G GY A Sbjct: 178 LQLLEQIWESHFEG-DEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAP 230 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 122/233 (52%), Gaps = 7/233 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++++DE + + +EG+ V +G + + DL+LLD+ LPD +G Sbjct: 2 KKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGY 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L + + ++S + +I+V+ + + ID+++GLE+GA+DY+TKP + REL+ R+K +L R + Sbjct: 62 DLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYEH 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +A+ +N ++++G I LT EY +L P +I +R+ L Sbjct: 122 NDEAKYEYTTK-LVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDEL 180 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADVC 230 L ++ D R+VD+ I RLR K+ D + T +G GY L D Sbjct: 181 LEIVWGYDYSG-DSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGDST 232 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 1 MP-HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M +HI IV+D+ + +++Y +EGY + S + Q DL +LDI LP Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 NG R +R S II+V+ R + +D+I+GLE+G+DDY+TKP RELV RV L R Sbjct: 61 NGYEFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + T + L+ + + GE +++T E+++L +P SR Sbjct: 121 WKQMKSHAEQTA-----ISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSR 175 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAA 227 + LL ++ D R VD LIRR+R KL L T G GY L Sbjct: 176 DELLSLIWGFDYFGSD-RVVDDLIRRIRKKLDKIPLETVWGFGYRLRT 222 >UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax=Actinobacteria (class) RepID=CSEB_STRAW Length = 235 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 8/233 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 H++ VED+ V + Q ++G+ V+ G E + D+ LLD+ +P +G Sbjct: 4 QTHVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + L R +R+ STV +I+++ R+D ID ++GLE GADDYVTKP + LV R++ +L R Sbjct: 64 VSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFG 123 Query: 122 LARQAQPHTQDN-------CYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPG 174 A ++ F ++ + R G+P+ LT E +L+ F + PG Sbjct: 124 HASGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPG 183 Query: 175 EILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAA 227 +LSR++LL + D R VDV ++RLR K+ D + T G GY L A Sbjct: 184 TVLSRDKLLERVWDYGW-GGDTRVVDVHVQRLRTKIGQDRIDTVRGFGYKLKA 235 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 115/231 (49%), Gaps = 9/231 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P I++V+DE + + GY V +G + +++ DL +LDI +P NG Sbjct: 5 PSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNG 64 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L R LR R+ ++ ++ R +D++VGLE+GADDY+ KP +REL+ RV+ LL R Sbjct: 65 YELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQ 124 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + G L+ +RH E I LT E+E+L A + G++ SRE Sbjct: 125 MDAEP---MAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASRED 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAA 227 LLR + +TVD I+RLR KL ++ T G GY A Sbjct: 182 LLREAWGWEYI-TETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 125/238 (52%), Gaps = 12/238 (5%) Query: 1 MPHH-IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M I+ VEDE L+ +EG+ VS +GA + + Q+ D I+LD+ LPD+ Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 NG + + LR++ ++ +T R D IDR+VGLE+GADDY TKP RE+V R+K + R Sbjct: 62 NGFEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRR 121 Query: 120 IDLARQAQPHTQ-----DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPG 174 +++ Q + + A + N ++ G+ ++LTR EY +L + +P Sbjct: 122 MEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPE 181 Query: 175 EILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAA 227 ++ SR++L+ + E+ RTVD I+ LR KL D + T G GY L Sbjct: 182 KVFSRQQLMDHIW-EHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSLVK 238 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 123/231 (53%), Gaps = 11/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+IV+DE + ++ + +++GY + +G + M+ S LI+LD+ +P+ + Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G + +R+ + + I+++T R++ D++ GL++GADDY+TKP + EL+ RV LL R Sbjct: 61 GWEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + + Q F ++V H + P+ LT E+E+L + NP ++ +R Sbjct: 121 AVVNQTTQTKQ----LHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNR 176 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 ++LL + D RTVD I+ +R KL + ++ T G GY L Sbjct: 177 DQLLLKIWGVDFLG-DERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 14/235 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++V+DEP + L+ Y V ++ ++ DLILLD LP +G+ Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 63 MLTRALRE---RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 L R L+ S + II++T + + +++ GLE+GADDY+TKP RELV R+K +L R Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D ++P + G CL+ H + P+++ EY +L F+T+ + +R Sbjct: 124 TDSMGISEP------IQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTR 177 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS----ADLLVTQHGEGYFLAADVC 230 +LL + V + RTVDV IRRLR LS + T G GY + V Sbjct: 178 NQLLDHVWGGNVYV-EERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRFSNKVA 231 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 115/227 (50%), Gaps = 8/227 (3%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M + HI++VED+ Q ++ + + YTV V + G QS DLILLD+ +P+ Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 NG +++ +R +S V II++T + D++ G ++G DDY+TKP L+ RV+ +L R Sbjct: 61 NGFEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 +N F ++V + + + I LT E+E+L N ++L+R Sbjct: 121 SYDKNV------NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTR 174 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLA 226 E ++ + + R +D I+ LR KL+ + T G GY + Sbjct: 175 ENIVEKVWGYDYFG-ETRIIDTHIKNLRKKLAIPYIKTIKGIGYKID 220 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 10/227 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 HI+IVEDE LQ EGY+V++ +G + L+LLD+ LP +G Sbjct: 3 KGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSG 62 Query: 62 LMLTRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L + R LR+ S +IL+T R D++ GL++GA+DYVTKP E+ EL+ R++ L Sbjct: 63 LEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR-- 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + +N + R + ++LT E+++LV + +P ++L+RE Sbjct: 121 --QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTRE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGY 223 ++L + D VDV IR +R KL L+ T G GY Sbjct: 179 QILSSVWGFDYIG-DTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGY 224 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 13/231 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IV+DE + + GY + ++ ++ DLILLD LP +G+ Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 63 MLTRALRE---RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 L R L+ + II++T + + ++I GLE+GADDY+TKP RELV R+K +L R Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 P G L+ H + DG+P ++ EY +L F+T+ +R Sbjct: 124 TGPGDSEAP------IEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTR 177 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLS---ADLLVTQHGEGYFLAA 227 +LL + V + RTVDV IRRLR L +L+ T G GY + Sbjct: 178 GQLLDQVWGGNVYV-EERTVDVHIRRLRKALGEVYENLVQTVRGTGYRFST 227 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 10/230 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGY-TVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++I++DE +++ +EG V ++ ++ DL++LDI LPD G Sbjct: 39 KVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGY 98 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + +R+ S V II ++ + + D+IVGL +G DDY+TKP +E+ RVK L R+ Sbjct: 99 DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 158 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 QP + + LN + L ++ I+LT E ++ F+ +P ++S+E L Sbjct: 159 L---QPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETL 215 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 + + D TV V IRRLR K+ D LVT G GY Sbjct: 216 YQAVWGEDFFGSD-NTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFVV 264 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 128/230 (55%), Gaps = 10/230 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++EDE L+ YF QE + V+ T +G + + DLI+LD+ LP + Sbjct: 1 MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60 Query: 61 GLMLTRALRE---RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + R+L++ + + ++++T +SD DRIVGLE+GADDY+ KP +EL+ R+K +L Sbjct: 61 GLSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R + +P + + AG L+++RH + LT E+ +L+A V N G +L Sbjct: 121 RRT----EQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVL 176 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFL 225 R+ LL ++ E D RTVDV IRRLR KL D + T GY Sbjct: 177 DRQMLLDLVWGADYEGTD-RTVDVHIRRLRKKLGDYQDRVQTVKQIGYKF 225 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 6/230 (2%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP I+IVEDE Q L + T+EG+ G ++ + +DL ++D+ +P + Sbjct: 1 MP-TILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMD 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + LRE ST+ +I +T RSD DRI GL +G DDY++KP EL+ R++ +L R Sbjct: 60 GFDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRT 119 Query: 121 DLARQA--QPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 + + G LN +++ D PI LT E+++L+ + G++ + Sbjct: 120 YQRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFT 179 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLA 226 RE LL + E + RTVD I+ LR KL +++ T G GY L Sbjct: 180 REHLLTSVWGLDYEGTE-RTVDTHIKTLRMKLKPYGNVIQTVWGIGYKLV 228 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 8/233 (3%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M + +++IVEDE ++ Y + + + +G +Q + D ++LD++LPD Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G+ + R +RE S V I++++ R D+++GL GADDY+TKP L ELV R+ L R Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D Q Q + +N + RD +PI L+ E+E+L N ++ S+ Sbjct: 121 QDRWLQ-DHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSK 179 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 +LL + D T+ V IRR+R K+ + L T G GY + Sbjct: 180 SQLLDAVWGYDTYG-DENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFST 231 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 14/235 (5%) Query: 1 MPHH-IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 MP+ I++VED+P+ ++ Y G+ A G + DL++LD LP Sbjct: 9 MPNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGV 68 Query: 60 NGLMLTRALRE-RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 +GL L R+ ++++T R++ R+ L GADDY+ KP +ELV RV+ LL Sbjct: 69 DGLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLR 128 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R + + G ++ + ++ G PI L E+++L +PG + S Sbjct: 129 RAYASGYRDCSPK------NGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYS 182 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 R+ LL + E RT+DV +R+LR KL D ++T G GY A Sbjct: 183 RDELLERVWGYDFEGG-HRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGP 236 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 11/233 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED+P + Y EG+ + G + + D ILLD+ LP + Sbjct: 1 MAKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGID 60 Query: 61 GLMLTRALRER---STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + R +++ S +++VT + + DR+VGLEMGADDY+ KP +E+V RVK +L Sbjct: 61 GLTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R + ++ +++ RH +G P LT E+++LVA + G +L Sbjct: 121 RRRETQQRLT-----ERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVL 175 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD--LLVTQHGEGYFLAAD 228 RE LL + E D RTVDV IRRLR K+ + T GY + Sbjct: 176 DRETLLNTVWGDDYEGTD-RTVDVHIRRLRKKMGESAAWVETVKQIGYRFREE 227 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 12/228 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +++++D+P A LQ T EGY V V G + + +L++LDI LP + Sbjct: 1 MGARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + R+ + I++++ R + ++ GL +GADDY+ KP L EL+ RV+ LL R Sbjct: 61 GWEICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR- 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 T + +F+ +++ + R G + LT E+++L F+ +P ++L+RE Sbjct: 120 -------RITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTRE 172 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA---DLLVTQHGEGYFL 225 +++ + ++V I LR K+ ++ T G GY L Sbjct: 173 QIIDRVWGLDFTGG-SNVLEVYINMLRQKIEDYGSRIIHTVRGVGYVL 219 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DE + +EGY V G + ++ +++LD+ LP N Sbjct: 1 MNEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVIN 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + L E +GII++T + D +D+I+GLE+GADDY+TKP ++REL+ R+K+L+ R Sbjct: 61 GYDVCKRL-EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRR- 118 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 L + +N + T+ ++ T E+++L ++N G + SRE Sbjct: 119 -LDKTIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSRE 177 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS---ADLLVTQHGEGYF 224 ++L ++ RTVD I+R+R KL DL+ T +G GY Sbjct: 178 QILNIIWNMDYAGG-TRTVDTHIQRIRKKLGNNYQDLIQTVYGIGYK 223 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +++V+DE ++ + + GY V +G + ++ + DL++LD+ LP G+ Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGM 69 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L + ++E+ ++ II+VT +S + ++GLE+GADDYV KP REL+ RV+++L R Sbjct: 70 DLCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKE 129 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + + LN+ H + + LT EY++L F+TNPG +R++L Sbjct: 130 GEEEEQFEGN--ITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDKL 187 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFL 225 L + + + D R VDV I+RLR KL + L T G GY Sbjct: 188 LDRVWGKDIYVTD-RAVDVNIKRLRDKLGDEKERLETIRGIGYRF 231 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 12/228 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +++VED+P +Y G+ V+ G G + + DLI+LD LP +G Sbjct: 40 RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGS 99 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R R V IIL+T +RI GLE GADDY++KP RELV+RV+++L R Sbjct: 100 EVCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + + L+ S H++ R GE + LT E+++L + +PG+ SRE+L Sbjct: 160 DLTPEA-----TFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQL 214 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFL 225 L+ + DL TV V +RRLR K+ D L T G GY L Sbjct: 215 LKSVWGWEF--GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 10/228 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++IVEDE Q + Y + G+T G I+++ +DL++LD+ +P +G Sbjct: 22 NVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDGFS 81 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + RE S + II++T + D++ G E GADDY+TKP + L+ + LL R A Sbjct: 82 VCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPA 141 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + + S H + DG+ I LT EYE+L + NPG+I +R++LL Sbjct: 142 -------PLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLL 194 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD--LLVTQHGEGYFLAADV 229 + E RTVD I+ LR KL + +VT GY V Sbjct: 195 NRIWGYDFEGT-TRTVDTHIKTLRQKLGDEGKHIVTLIRSGYKFEVAV 241 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 298 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 10/233 (4%) Query: 1 MPHH-IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 MP + I+I +D+ + L SYF E +TV + G + ++ D+++LDI +P Sbjct: 1 MPANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + R R+ + + II ++ + D DR+VGL +GADDYV KP +REL+ RVK+ L R Sbjct: 61 DGFEVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 R+ + +Q Y ++ R + R I LT E+ +L + P + SR Sbjct: 121 ----RRGEVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSR 176 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 +LL RT+D IR LR KL D +VT +G GY Sbjct: 177 MQLLEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 298 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 9/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + IVEDEP+ L++Y + GY V +G ++ + D ++LD+ LPD Sbjct: 1 MAITVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMP 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R S V I++++ +S DRI G+ +GADDYVTKP RE++VR++ +L R Sbjct: 61 GEEICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRT 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + + + ++ + + + E I LT E+ ++ +PG + SR Sbjct: 121 RTLNKMEIFSFNK----KEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRA 176 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 LL+ + R++DV I+ LR KL ++T G GY Sbjct: 177 DLLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGG 228 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 11/227 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM-QNQSVDLILLDINLPDENGL 62 +++V+DE + ++ + ++ Y V +G +I + + + LI+LD+ +P +G Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + +R+ S V II++T +SD D ++G E+G D+Y++KP + LV RV+ ++ R Sbjct: 65 QVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRS-- 122 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 T D G ++ + H ++ D I+L+ E+E+L F+TN G LSRE++ Sbjct: 123 -----IQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKI 177 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAA 227 L + D RT+D +++LR K+ D + T G GY Sbjct: 178 LNNVWNYDYFG-DARTIDTHVKKLRSKMGDKGDYIKTIWGMGYKFEV 223 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 130/234 (55%), Gaps = 9/234 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSV-DLILLDINLPDE 59 M H I+I++D+ QA L+ YF + V+ +G + + + D+++LDI LPD Sbjct: 1 MTHRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + +R S V +I++T R D+ DRI+GLE+GADDY+ KP REL+ R+K +L R Sbjct: 61 DGFETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRR 120 Query: 120 IDLARQAQPHTQDN--CYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 + +A P + + F ++ + L + G I +T E ++L A +++ G L Sbjct: 121 ATASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPL 180 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 +R+RLL + S R E D R++DV I R+R KL D + T G+GY A Sbjct: 181 TRDRLLDLASGRDFETFD-RSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWA 233 >UniRef50_A7GLY2 Two component transcriptional regulator, winged helix family n=9 Tax=Firmicutes RepID=A7GLY2_BACCN Length = 220 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 112/227 (49%), Gaps = 7/227 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +HI+++ED+ Q ++ + + Y V+V + G + DLILLD+ +P+ N Sbjct: 1 MNYHILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLN 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + +R +S + IIL+T + D++ G ++G DDY+TKP + RV+ +L R Sbjct: 61 GFEVANIIRNQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 R DN F ++ + + + I LT E+E+L + N ++++RE Sbjct: 121 YGERT------DNHLSFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRE 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAA 227 ++ + + R +D I+ +R KL+ + T G GY + Sbjct: 175 NIVERVWGYEPYG-ETRIIDTHIKNIRKKLNTPYIKTVKGIGYKIDG 220 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 7/229 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IVED+ Q Y G+ V A G + + DLILLDI LP +G Sbjct: 2 KKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGF 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R LR V +++VT R + +D + GL +GADDY+ KP ELV RV++ + R + Sbjct: 62 AVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYER 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + Q + + + + + + D + + TR E+E+L +P + SRE L Sbjct: 122 ILASVKPEQ-HVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREAL 180 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 + D TV V I R+R K+ D L T G GY Sbjct: 181 FERVWGAEALG-DSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFR 228 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M IVI++D+ + ++ Y +G+ S G L +I+Q + DLI+LD+ LPDEN Sbjct: 1 MKKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDEN 60 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 GL + + LR + II++T + D +DRI+GLEMGADDY+ KP REL+ R+ ++ R Sbjct: 61 GLDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRR 120 Query: 120 IDLA-RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 ++ + +F + N TL++D + I LT E+ +L F+ N + LS Sbjct: 121 HEMELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLS 180 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 R++++++ + ++ D R++DV I R+R + D L T+ G GY Sbjct: 181 RDQIMQLAKGKELDVFD-RSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVFE 232 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 13/237 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++I++VEDE ++ Y +GY V +G ++++NQ + L ++DI +P +G Sbjct: 3 SYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + LT LRE +I+++ +S+ +D+I+GL +GADDYVTKP + EL+ RV + L R Sbjct: 63 ITLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYT 122 Query: 122 LA------RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 ++ + + D+ + G LN + + DG+ IK T E+++L + N G Sbjct: 123 KYLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGR 182 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 + S + + + N D TV V +R +R K+ L G GY + Sbjct: 183 VFSADEIYERVWNENAINTD--TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 237 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+IV+DE L+ ++GY V+ SG EI+ + DL++LD+ LP +G Sbjct: 3 KEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDG 62 Query: 62 LMLTRALRERSTV---GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 L + RA+R + I++++ + + D I GLE+GADDY+TKP + L+ R++++L Sbjct: 63 LEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLR 122 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R +A P +G ++ +HT+E +G+ I LT +E+++L + PG + + Sbjct: 123 RQQ--AKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFT 180 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLA 226 R +++ + D R+VDVLI LR KL + + T G GY Sbjct: 181 RWQIVDKIRGEHYAVTD-RSVDVLISGLRKKLEDYGEYIETVRGVGYRFR 229 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+IV+DE + ++ YF +GY V ++G E +D+ILLDI +P+ + Sbjct: 1 MLEKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNID 59 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R++ + II ++ R ID+I GL +G DDY+ KP ++EL RV+ L R Sbjct: 60 GFQVCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR- 118 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + P + F L+++ + + E I T E++++ +P ++ S+E Sbjct: 119 ---EKRIPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKE 175 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLA 226 ++ + E D TV I+++R K S + + T G GY Sbjct: 176 QIYEKVWGYDAEG-DANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 11/229 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H+V++EDE L+ T EG V+V + G +I++ Q DL++LD+ LPD +G++ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 64 LTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R LR S + II++T R + +R+ GL++GADDY+ KP EL+ RV + R + Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +R + AG LN+ + G I+LT E+ +L F+ +P + +R+ L Sbjct: 138 SRPV------TVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTL 191 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA---DLLVTQHGEGYFLAAD 228 L + D V+V I LR K+ L+ T +G GY L D Sbjct: 192 LSRVWGFTYVG-DSNIVEVHISNLREKIGDHERKLIRTVYGVGYTLRPD 239 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 7/225 (3%) Query: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 ++VED+ + Y T+EG+ + G + Q S DL+LLDI LP NG+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 66 RALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQ 125 + +RE+S + +++++ + +D+ +GL GADDY+ KP + EL RVK + R Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSA 120 Query: 126 AQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRM 185 +P R +++ ++ ++GEP++LT E+++L F +NP ++ ++E++ R Sbjct: 121 EEPAVN-KVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRS 179 Query: 186 LSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 + + D ++V +RRLR K+ D + T G GY L Sbjct: 180 VWNEEYFD-DQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 123/239 (51%), Gaps = 15/239 (6%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN--QSVDLILLDINLPDE 59 ++++ED+P + Y Y V + E + N +S+DL++LD+ LPD Sbjct: 8 TKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDM 67 Query: 60 NGLMLTRALRERST-----VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVK 114 +G+ + + +R+ II++T + D DR++GLEMGADDYV+KP E REL+ R++ Sbjct: 68 DGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIR 127 Query: 115 NLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPG 174 ++ R DL Q F + H + D EP++LT ++++L F T+ G Sbjct: 128 AVMRRHDLPLHQQKEDN---LVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSG 184 Query: 175 EILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 ++LSRE+L + + R +DV I RLR + + ++T G GY A D Sbjct: 185 KVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 243 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 10/230 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IV+DE + Y +GY + G ++Q+ DLILLDI +P +GL Sbjct: 2 QTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGL 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +R + ++ +I ++ R +D++ E+GADDY+TKP + EL R+K + + Sbjct: 62 EVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYAM 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 P ++ R+ ++ E +GE I LT E ++L+ F +P ++ + E+L Sbjct: 122 ----NPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQL 177 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 + TV V I LR K+ + + T G GY Sbjct: 178 YDRIWNLDATGYVE-TVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 8/231 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IVEDE + EG+ V + G + + + +L +LDI LPD +G Sbjct: 2 RKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGS 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + +R +++ +I++T + + +D++V +GADDY+ KP L EL RVK +L R + Sbjct: 62 EVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEG 121 Query: 123 AR--QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 ++ +N ++ G I L E+ +L P +++ Sbjct: 122 THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 ++ + + + D TV V I RLR+K+ D L T G GY L Sbjct: 182 QIYESVWGKEFIH-DDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLV 231 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 6/228 (2%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +++V+DEP ++ G+ V A+G DL++LD+ LPD +G Sbjct: 21 PRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGF 80 Query: 63 MLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR V ++ +T R D+I GL G DDY+TKP + EL+ RV+ +L R Sbjct: 81 EVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTR 140 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 +P +A L+ H + R +P++L+ E+ +L F+ NP +LSR + Sbjct: 141 RPA-PEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQ 199 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL---SADLLVTQHGEGYFLA 226 +L + R + VD + LR KL L+ TQ G GY L Sbjct: 200 ILAAVWDRDFDGEPT-VVDQYVSYLRRKLGQHGPPLIHTQRGFGYALR 246 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 7/231 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+IVED+ + Y + V + G ++ DLI+LD+ LP +G Sbjct: 2 KKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGF 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R + + V +++V+ + + ID+I GL +GADDY+TKP ELV RVK+ + + Sbjct: 62 DILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYER 121 Query: 123 ARQA-QPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + +N G +N + + + + L + E+++L+ P + ++ Sbjct: 122 LKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKDE 181 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 L + D TV V IRR+R K+ + T G GY + Sbjct: 182 LFESIWGLDSIG-DSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIRV 231 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I++D+ ++ T EGY V+V G ++ DLI+LDI +PD + Sbjct: 1 MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + + LR+ + + I++VTG DR+ GLE GADDY+ KP ELV RVK LL R+ Sbjct: 61 GLEVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRL 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 D ++ +D F+ +++S R I+ + E+ +L F+ +P ++L+RE Sbjct: 121 DHKKK-----EDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRE 175 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFLA 226 L+ + + ++V + LR KL L+ T G GY L Sbjct: 176 LLMDRVWGFDFRG-ESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVLR 224 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 11/232 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGY-TVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 I+IV+DE +Q +EG+ + + ++ + L +LD+ LPD Sbjct: 3 QPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGE 62 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + +R +S + I+ ++ +S+ +D+++GL +G DDY+TKP +E+ RVK L R+ Sbjct: 63 GYQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRV 122 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + T + +N + +GE ++LT E +L F+ NP ILS+E Sbjct: 123 SMMEAPVAETT----TVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 L + D TV V IRRLR K+ + + T G GY L Sbjct: 179 TLFTQVWGESFFGSD-NTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 119/265 (44%), Gaps = 46/265 (17%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+IVEDE +Q Y ++EG+ + G + + DLI+LD+ +P +GL + Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 65 TRALRERSTV---GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 +R+++ + I+++T R + +DRI+GL GADDY+ KP RELV RV+ +L R Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLE------------------------------- 150 H Y+ A + +++ + T Sbjct: 123 R----GSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQ 178 Query: 151 --RDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRH 208 P++LT E+++L F++ PG + +R +L+ L D R VD I RLR Sbjct: 179 LEIAQIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFG-DERVVDTHIARLRK 237 Query: 209 KLSAD-----LLVTQHGEGYFLAAD 228 K+ D + T G GY + Sbjct: 238 KIEPDPSAPTFVKTVVGVGYRFEDE 262 >UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridium perfringens RepID=Q0TNL1_CLOP1 Length = 232 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 4/230 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I+EDEP Q L+ F +EG+ V G +I + + L++LD+ LPD + Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDIS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + R L + II++T R D +D+++GLE+GADDY+TKP ++RE V RVK L R Sbjct: 61 GFDVCREL-NKLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRK 119 Query: 121 DLA-RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 D +++ T + + + + + E I+L E E+L+ F+ NP LSR Sbjct: 120 DKFLKESNKSTVKDEFIIGSIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSR 179 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKL-SADLLVTQHGEGYFLAAD 228 +++L + D RTVDV +RRLR KL + +++ T G GY + Sbjct: 180 DQILDGVWGDEYFG-DFRTVDVHVRRLRQKLNNEEIIETIFGLGYMFKGE 228 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 111/230 (48%), Gaps = 7/230 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I+I++DE + L Y G+ +G + N +DL++ DI +P +G Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L + +R S V + ++ +SD +D+I+GL++GADDYV KP E+V RV+ L R+D+ Sbjct: 72 ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + + L++ L ++G+ ++T E+++L + + G + ++ + Sbjct: 132 FSKGEKQ-NHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASI 190 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + + D + V I +LR K+ + L+T G GY Sbjct: 191 YEHVWGQEYIG-DENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFEK 239 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 11/227 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + I++VED+ Q L E Y G E ++ DL++LD+NLP ++G Sbjct: 2 YKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGF 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + ++ R V +I++T R + +D+I G +G DDY+TKP EL++R+K +L R Sbjct: 62 SVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R ++ ++ +N+ + ++GEP++LT EY +L NP I ++E++ Sbjct: 122 GR-----GEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQI 176 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYF 224 + L D V VL+RRLR K+ D + T G GY Sbjct: 177 MDRLW-PDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 9/234 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M + I+IV+D+ LQ + +EGY V + +G ++N+ DLIL+DI +P + Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKID 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + +R + + II +T + ++ D+I G G DDY+TKP +L EL +R+ +L R+ Sbjct: 61 GFEAIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRV 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 ++ + LN+ HTL + + I LT E+ +L N G + Sbjct: 121 ---STGVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSS 177 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAADV 229 L + + D ++ IR LR KL+ + T G GY + + Sbjct: 178 ELYERVWGQEFLEND-NSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 12/229 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +I+IV+D+P + + + +EG+ G + + VD+++LDI +P+ +G Sbjct: 32 PNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + LR+ + I+++T + + ++ G +G DDY+ KP + ELVVRVK LL R + Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 T + LN + + + L E+E+L + G SRE+L Sbjct: 152 -------TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQL 204 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSADL----LVTQHGEGYFLAA 227 + + E + RT+DV I RLR K + + T G GY L Sbjct: 205 IEDVWGYDFEG-NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 HI++VED+ + Y VSV + ++ + VDLI+LD+ LP E+G Sbjct: 17 TPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGEDG 76 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R LR +ST+ I+++T +S+ IDRIVGLE+GADDY+ KP REL+ R++ +L R Sbjct: 77 LSICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR-G 135 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A+ FAG+ L+ L DG + LT AE+++L A PG +LSR+ Sbjct: 136 SGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSRD 195 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAADVC 230 +LL + R P R++DVL+ R+R K+ +++ T GY +V Sbjct: 196 QLLDLTQGR-APGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEVS 249 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 13/231 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 P ++I++D+ A L Y + G+TV A ++ DL++LD+ LPD +G Sbjct: 15 PTRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDG 74 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R +R S + II++T R D DRIVGLEMGADDY+ KP E RELV R++ +L R Sbjct: 75 LAVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR-- 132 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R +N + ++ ++LT AE+E+L N G ++SR+R Sbjct: 133 -----GTRDDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDR 187 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 +L + D R++D+L+ RLR KL D + T G GY Sbjct: 188 ILDGTRGIDWDAYD-RSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIG 237 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 115/233 (49%), Gaps = 10/233 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 MP+ I++V+DE ++ + GY V G E+ ++++ DLI+LD+ +P + Sbjct: 1 MPN-ILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLD 59 Query: 61 GLMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G + R L+ + II+++ RSD +D+++GLEMGADDY+TKP RELV RV L Sbjct: 60 GYSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARL 119 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R P N ++ ++E G+ L E+E+L PG+ Sbjct: 120 RRDKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYF 179 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFL 225 SR LL+ V D RTVDV IRR+R KL + T G GY Sbjct: 180 SRYFLLKQFWEFDVS-NDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRF 231 >UniRef50_C7LZ74 Two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZ74_ACIFD Length = 225 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPD-E 59 M H+++VED+P L YF +E V V ++G SV L++LD+NLP Sbjct: 1 MGRHVLVVEDDPAIADLLCVYFAKEEGEVRVVSNGEDALSAFDA-SVTLVILDLNLPGRL 59 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +GL + RA+R RSTV II+++ R + +DR+ GLE+GADDYVTKP REL+ RV+ + R Sbjct: 60 DGLEVARAIRHRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERR 119 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 ++ + F G + + RDG P+ LT E+++L F +P L+R Sbjct: 120 VEANPSSAAA-----LSFNGVDWDPRARQVLRDGVPVALTNREFDLLGYFFAHPATALTR 174 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-LVTQHGEGYFLAAD 228 LL + D RTVDV + +LR KL + + T G GY + Sbjct: 175 RELLDGVWGPEWYG-DDRTVDVHVLQLRKKLGGAIAISTVWGVGYRFDPE 223 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 12/231 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS-VDLILLDINLPDEN 60 I++VEDE A ++ +EGY V G E + + D ILLD+ LPD + Sbjct: 10 QKTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDIS 69 Query: 61 GLMLTRALRE---RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G + + LRE V +I+VT + IDR+VG E+GADDYV KP +REL++R++ LL Sbjct: 70 GTEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALL 129 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R + P + F ++ H + D + I LT E+ +L AF++ G + Sbjct: 130 RRTER-----PADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQ 184 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLA 226 +R+ LL + + RTVD ++RLR KL + T G GY Sbjct: 185 TRDALLSDVWGIEADVT-TRTVDTHVKRLREKLGDAGRYVETLRGVGYRFR 234 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 7/233 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+++ED+ +QS+ T+E Y+V+ +++G E + + DLI+LDI LP+ + Sbjct: 1 MNGKILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEID 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +R S V I++++ + +D++ GL++GADDY+TKP L EL RV+N + R Sbjct: 61 GFTVCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRY 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + Y+ G + + D + I+LT E+ +LV N ++ +++ Sbjct: 121 KGYNKKTDDNSIWRYK-NGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKK 179 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L + + + T+ V ++ LR KL + + T G GY + Sbjct: 180 ELYENVWNQDNLEGN-NTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIGE 231 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 14/239 (5%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I+IVED+ + Y G VSV +G+ E +QN+ DL++LD+ LP E+GL Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R +R I+++T R+D +D+++GLEMGADDY+ KP+ R L+ R++ LL R+ Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 124 RQAQPHTQ--------DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 +A + F ++ S + + I LT AE+++L ++ G Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLASSAGR 206 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAADV 229 +LSRE + L + D R++DV + R+R K+ D + T +GY + Sbjct: 207 VLSREEIFTALRGIEYDGQD-RSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFVKEA 264 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 125/233 (53%), Gaps = 7/233 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 HI++V+D+ + L + ++ + V+ R N L++LD+ LP E+G+ Sbjct: 28 PHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESGI 87 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R LR S V II++T + DRI+GLE+GADDYVTKP RELV R++ +L R+ Sbjct: 88 DFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVGE 147 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + YRFAG+ L SR L G + LT EY++L+A + P +L+R+ Sbjct: 148 NETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTRDM 207 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 LL +L R+ P R +DV I RLR KL D ++ T G GY LA V Sbjct: 208 LLDLLRGRQA-GPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLAVPV 259 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 295 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 8/235 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M ++++EDEP L T EGY V V G E Q DLILLD+ LP N Sbjct: 1 MTQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMN 60 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G + LR +I++T ++ + + GL+ GADDY+TKP + EL+ RV +L R Sbjct: 61 GFEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRR 120 Query: 120 IDLARQAQPHTQDN--CYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 + + + + + ++ + +GEPI L E+E+L+ PG ++ Sbjct: 121 STGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVM 180 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL----LVTQHGEGYFLAAD 228 +R+ L+ + RTVDV + LR KL D + + G GY L + Sbjct: 181 TRDDLMNAVWGFDYIGG-QRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVVN 234 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 +I IVED L+ Y Q + V G L M+++ DLILLD+ LP +G Sbjct: 10 NKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGADG 69 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + L R +R S V II+VT + + IDR++GLE+GADDYV KP RE+V RVK +L R Sbjct: 70 VTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRR-- 127 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + L H++ G+ +K+T++E+ +L AF+ +PG++ SR+ Sbjct: 128 ----GGEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRDE 183 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAAD 228 L+ + R E D R +D I+ LR KL + + + +G GY + Sbjct: 184 LIAKIQGRTYEGYD-RNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKFILE 234 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 295 bits (757), Expect = 9e-79, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 122/228 (53%), Gaps = 9/228 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 +++VED+ + L+ GY+V SG E +N++ +L++LDI LPD +G Sbjct: 4 KVKLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDG 63 Query: 62 LMLTRALRE-RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + + LR+ + V I+++T + D++ G E GADDY+TKP + EL+ R+K LL R Sbjct: 64 YEVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRK 123 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +++ +F + ++ T+ +G+ + L++ E+++L+ N ++S+E Sbjct: 124 NISISQP-------IKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKE 176 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAAD 228 +L + D TV+V + +R KLS +L+ T G GY L + Sbjct: 177 EILDAVWGIDYYGSD-NTVEVYVNYIRKKLSPELIKTIRGVGYKLVGE 223 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 121/235 (51%), Gaps = 10/235 (4%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 MP+ I+IV+DE ++ +EGY V SG + + + DL++LD+ LP Sbjct: 1 MPNEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGI 60 Query: 60 NGLMLTRALRERS---TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNL 116 +G +TR +R + + I+++T + + D + GLE+GA+DY++KP RELV R++ + Sbjct: 61 DGFEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGI 120 Query: 117 LWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 L R R +P TQ ++V RH + D + LT +E+++L VT G + Sbjct: 121 LRR--RTRVEKPATQATVI-AGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWV 177 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAADV 229 +R +++ + + R+VDV I LR KL D + T G GY + Sbjct: 178 FTRGQIVDAVHGENYAVTE-RSVDVTIAGLRKKLGPCADFIETVRGVGYRFREEA 231 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 11/235 (4%) Query: 1 MPHH--IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPD 58 M H I++ +DE L Y Q G+ V +G+ + ++ LI+LD+ LPD Sbjct: 1 MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPD 60 Query: 59 ENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 G + A+R RS V I+++T + DR+ GL++GADDYVTKP E+V RV+ +L Sbjct: 61 IPGEEVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILR 120 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R L P YR ++ + + G +LT EY++LV +P + S Sbjct: 121 RTMLDH---PLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFS 177 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 RE L+ + D+RT+D ++ LR K+ D + T +G GY D Sbjct: 178 REELIERVFGMDFRG-DVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGD 231 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 9/221 (4%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++VEDEP ++ Y ++G+ V + G + + +LDI LP G + Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 65 TRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R LRE +I +T R D +DRIVGLE+GADDYVTKP RELV RV+ +L R+ Sbjct: 71 CRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVAGP 130 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 +P G L+ R T+ G+P++LT E+++L + PG + +RE LL Sbjct: 131 PPGRPRI------VGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELL 184 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSAD-LLVTQHGEGY 223 + RTVDV + ++R KL + ++ T G GY Sbjct: 185 AGVWGY-AVPAGTRTVDVHVAQVRAKLGPESVIRTHRGVGY 224 >UniRef50_B1YJZ1 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJZ1_EXIS2 Length = 220 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 8/224 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 HI+I EDE + L GY V+ A+G ++ Q+ + DL++LDI +P +G Sbjct: 3 HILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIMMPYLDGFE 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R+ S II +T D +++ G ++G DDY+ KP LR L+ R++ ++ RI Sbjct: 63 VAQQVRKTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRRIR-- 120 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + F L + + + G + LT E+++L + NPG +L RE+L+ Sbjct: 121 -----TNDEEQLSFREITLFPASYNVLISGNAVILTLKEFQILHLLLENPGRVLEREQLI 175 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAA 227 + L D R +D I+ LR K++ + T G GY L A Sbjct: 176 QQLWGFDAFG-DTRFLDTHIKNLRKKINVPYIQTVKGVGYKLEA 218 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+D+ EGY V G E + + DL++LDI +P + Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + + +RERS V +IL+T +S +D++VGLE+GADDY+TKP + +EL+ R+K +L Sbjct: 61 GFEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL--- 117 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + +D R ++ + +T+ RDGEP+ LT E+++L + PG+ +R Sbjct: 118 RRLGRREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRA 177 Query: 181 RLLRMLS-ARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYF 224 ++ +S R +DV I RLR K+ +++ T GY Sbjct: 178 QISEAVSTGSHYLA--SRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 7/233 (3%) Query: 1 MPHH-IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M H I++++D+ L Y EGY + SG E +++ DL+LLD+ +P Sbjct: 1 MSTHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGI 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + +RE S V ++++T + + DRI+GLE+GADDY+ KP REL+ R+K LL R Sbjct: 61 DGFETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 I+L + Q + G LN + + DGE I +T +E+++L ++ G+ + + Sbjct: 121 IELDK-NQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPK 179 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFLAAD 228 E L + R + D R++D+ + +R KL + T G GY Sbjct: 180 EDLYLEVLGREIMAYD-RSIDMHVSNVRRKLGGTTEQSKIQTIRGIGYMFVDP 231 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 13/235 (5%) Query: 1 MPHH---IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLP 57 M I++VED+ L EGY V G ++S DL++LD+ LP Sbjct: 1 MSDKTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLP 60 Query: 58 DENGLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNL 116 + NG + + LR+R +++++ + D+IVGL +GADDYV KP L+EL+ R+K + Sbjct: 61 ELNGFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAV 120 Query: 117 LWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEI 176 L R + A F ++++ T+ R P++LT E+++L F+ +PG Sbjct: 121 LRRRYPSAGAGSPPP---VTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRT 177 Query: 177 LSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 +RE LL E RTVD +R+LR K D +T G GY Sbjct: 178 FTREELLSGAWGYHYEGS-ARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_C5CP31 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=C5CP31_VARPS Length = 249 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 2/226 (0%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I++++D+ A L +YF + GYT+ + ++ D +LD+ LP+ +G Sbjct: 19 PRILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGPFDAAILDVMLPEMDGF 78 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L R +R+ S + I+++T R + +DR+VGLE+GADDYV KP E RELV RV+ +L R Sbjct: 79 ALCREIRKESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRS 138 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 A F G +++ R + R GE ++LT E+E+L PG++ SR+ + Sbjct: 139 TPAAANGNGTQHRVFDGLSIDLDRRQVLRHGERVELTGTEFELLALLAAEPGKVFSRDDI 198 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA-DLLVTQHGEGYFLAA 227 L L E R VD+++ RLR KL D + T GY LA Sbjct: 199 LNRLRGHEAELY-TRAVDIVVSRLRKKLEPLDCIKTLRNAGYALAV 243 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 12/230 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + I++V+D+ L+ + + + V I Q + ++LDI +P +NG Sbjct: 5 NTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGF 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L R +R S V I+ ++ RSD +D+I GL +G DDY+ K E+V RVK +L R Sbjct: 65 ELCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSAT 124 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R ++ + LN+S + DG + LT E+E+L F +P + + ++L Sbjct: 125 RRP----MEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQL 180 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 L D T+ V + RLR K+ AD LV G GY Sbjct: 181 LAKFWDG---VGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFEG 227 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 9/232 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+IVED+ Q Y + G V++ G + N+ DL++LD+ LP +G Sbjct: 9 TPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDG 68 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + R +R I+++T R++ +D+++GLEMGADDYV KP + R L+ R++ LL R + Sbjct: 69 LTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSE 128 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 A F ++ ++ +GE + T AEY++L +N G ILSRE Sbjct: 129 N---APSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRED 185 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAAD 228 + L + D R++DV I R+R K+ D + T +GY + Sbjct: 186 IFERLRGIEYDGQD-RSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 236 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 13/231 (5%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++IVED + ++ Y + GY V V ++G ++ DL+LLD+ +P +GL Sbjct: 23 KTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGL 82 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 R R V +I +T R +D+++GLE+GADDYVTKP + EL+ RV+ L R Sbjct: 83 EFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRS-- 140 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + R L+ + T GE + LTR+E+E++ AF+ PG + +R L Sbjct: 141 ----SEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLEL 196 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L L + RT+DV +R LR K+ A+ L+ T G GY L D Sbjct: 197 LEQL--QEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 122/231 (52%), Gaps = 10/231 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++ EDE ++ + + GY V +G + + Q+ D++LLDI +P+ +G Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 64 LTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R + VGII++T R+ D+++GL +GADDY+ KP EL+ R+++LL R++ Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R+ Q + +++ +++ G +++T EY++L F+ N +++SR+ L Sbjct: 123 LRR---RKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDEL 179 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 L + D +TVDV IRRLR K+ + + T G GY + Sbjct: 180 LDAVWGENYFG-DRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRNE 229 >UniRef50_C1SI97 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI97_9BACT Length = 236 Score = 293 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 5/229 (2%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+D+P L+ EGY V ++G + + + D+I+LD+NLPD NG Sbjct: 8 KILVVDDDPDILEVLRLLLDLEGYNVITASNGITGLALARENTPDMIVLDLNLPDINGQQ 67 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R + I++++ R + D++V LE GADDY+TKP E EL+ RVK +L R + Sbjct: 68 ICKIIRSELDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSEKN 127 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 +Q + F ++ + + E + LT EYE+L+ FV G +LSR+ ++ Sbjct: 128 NTSQEAGTGDVLIFHHMTIDKASRQVFIKDEKVALTPKEYEILLYFVGKTGHVLSRDDIV 187 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAA 227 + + R++DV I+ LR K+ D++ T G GY + Sbjct: 188 NDIWGKNSIYSWSRSLDVHIKNLRQKIEINPKNPDIVKTVSGVGYKIKK 236 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 13/224 (5%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I+IVEDE ++ G+ + G + +Q +S DLI+LDI LP +G + Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + + + I ++ ++ DRI G MGADDY+TKP E+ EL+ RV+ +L R Sbjct: 64 ---IEQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRTA 120 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 C+ ++ S H + +G+ ++ T EYE+L V N LSRERLL Sbjct: 121 S--------CFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLE 172 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLS-ADLLVTQHGEGYFLAA 227 ++ E D RTVDV I++LR KL D + T + GY L Sbjct: 173 LVWGYDFEG-DTRTVDVHIQKLRKKLEWEDRIKTVYKLGYRLEV 215 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 9/235 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 ++IVED+ ++Y G+ ++ G + ++ +S DLILLD+ LP ++G Sbjct: 4 KRRVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW--- 118 + R +RE+ + I++VT R++ +D+I GL +GADDY+ KP + ELV RV L Sbjct: 64 YDICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYD 123 Query: 119 RIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILS 178 R+ + + A + V+ + + IK E+E+L NP + S Sbjct: 124 RMMRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVFS 183 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 RE+L + D TV V I R+R K+ D +L T G GY D Sbjct: 184 REQLFEKIWGYDYVG-DSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 7/227 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+DE + EG+ V SG + DL++LD+ L D +G Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 64 LTRALR-ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + LR V + +T R D++ GL +G DDYVTKP + ELV RV+ +L R Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 H RFA L+ + R G ++LT EY +L + N +L+R +L Sbjct: 200 PVTGDGHPAP--LRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQL 257 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHK---LSADLLVTQHGEGYFLA 226 L + ++ I LR K + L+ T G GY L Sbjct: 258 LDHVWGHDFSGEGG-VLETYISYLRRKVDNVEPPLIHTVRGVGYVLR 303 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 I++VED+ + + + E Y+V G EI +N S D+ILLD+ LP +G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 65 TRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLAR 124 + +R S V +I+ T + D+++GL +GADDY+TKP + EL+ R+K + R + Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 125 QAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLR 184 ++ ++QD ++ +N+S++ + + G + LT E+E++ TN G S+E+L Sbjct: 123 SSR-NSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLYN 181 Query: 185 MLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAAD 228 + + ++ I RLR+KLS + + T G GY + + Sbjct: 182 AIWKEPYYG-NENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEEE 229 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 138/232 (59%), Gaps = 8/232 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IV+D+ + L + + G VS+ G + ++M +VDLI+LD+ LP ++G+ Sbjct: 82 HVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGIE 141 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + + +R S V II++T +D D+I+GLE+GADDY+ KP + REL+ R++ +L R++ Sbjct: 142 ICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRLENN 201 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 R + YRFAG+ L+ +R L ++LT AE+ +L AFV + ILSR++L Sbjct: 202 RAPSRPVTHS-YRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHILSRDQL 260 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 + M + V D R+VD+LI RLR KL+ D L++T GY +V Sbjct: 261 MEMAGNQAVYGYD-RSVDILISRLRRKLNDDSRSPKLILTIRNGGYQFGHEV 311 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 113/234 (48%), Gaps = 14/234 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I +VEDE L+ EG+ V G +Q + DL++LD LP + Sbjct: 1 MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVS 60 Query: 61 GLMLTRALRERSTV---GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G+ L R LR+R II++T R + +R+ GL GADDYV KP EL+ RVK +L Sbjct: 61 GIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R A+P R L+ H + R ++L E+ +L +++PG + Sbjct: 121 RR------AKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVF 174 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS----ADLLVTQHGEGYFLAA 227 SR +LL + + D RTVDV + RLR L+ D++ T G GY L + Sbjct: 175 SRSQLLDGVWGHDIYV-DERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLES 227 >UniRef50_C1IA20 Two-component system response regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IA20_9CLOT Length = 233 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 3/226 (1%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I+ED+ L+ +EGY V V +G +++ ++N + DLILLDI L D + Sbjct: 1 MRESILIIEDDRDISEILRFALIKEGYKVKVNPNGLEVKDEIKNFNPDLILLDIMLNDTD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + R + + II++ R D +D+I+GLE+GADDY+TKP ++RE++ RV+ + R Sbjct: 61 GFSVCRNI-SGYNIPIIMLIARVDIMDKILGLELGADDYITKPFDIREVITRVRVAIRRR 119 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + ++ + +N + ++ + E I+L E+E+L N ++ SR Sbjct: 120 EEMKKLITSKEQEEILVDNIVINEACRSVHVNNEEIQLKPKEFELLTFLCKNTNKVHSRN 179 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-LVTQHGEGYFL 225 +LL ++ D RTVDV I RLR KL + + T G GY L Sbjct: 180 QLLDLIWGYDFLG-DTRTVDVHITRLRKKLKDNFNIETIFGVGYML 224 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 113/239 (47%), Gaps = 19/239 (7%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M H I+IVEDEP + T GY V +M++Q ++I+LD LP ++ Sbjct: 1 MTHRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKS 60 Query: 61 GLMLTRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 G+ + LR + I+++T +S+ D+++GL+ GADDYVTKP +ELV RV+ +L Sbjct: 61 GVQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAML 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLE-----RDGEPIKLTRAEYEMLVAFVTN 172 R P L+ S H + + + I L E+ +L F+ N Sbjct: 121 RRQMPIEDTGP------LTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMAN 174 Query: 173 PGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFLAA 227 P + SR LL + V + RTVDV I+RLR L + T G GY + Sbjct: 175 PERVHSRASLLDKVWGSEVY-IEERTVDVHIKRLRAALVPFDCDRYIETVRGSGYRITK 232 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 15/230 (6%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++I+I+EDE +++Y +EGY V T +G E+ + + +DL++LD+ LPD +G Sbjct: 2 NNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGE 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + + LR+ S V I ++T +S D+I GL +GAD+Y+TKPL REL RV L R+ Sbjct: 62 EVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGC 121 Query: 123 ARQAQPHTQDNCYRFAG--YCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + +N F ++V + ++ GE I LT E+++L +N G++ +RE Sbjct: 122 KK-------ENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTRE 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFL 225 ++ + D R++DV I+ LR K+ D +VT GY Sbjct: 175 AIIERAFGMEFDGSD-RSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 8/230 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 I +V+DE ++SY GY V V +G + + DLI+LD+ LPD G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + LR+RS V II++TG++D D + GL++GADDY+TKP R+LV RVK LL R + Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTE- 128 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + +N + +++ G + LT EY +L+ + PG+I +RE L Sbjct: 129 -DELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREEL 187 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 + + + + D RT+D I+ LR+K+ + +VT G GY + Sbjct: 188 IIVTLGQNFKGYD-RTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKFGS 236 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 125/230 (54%), Gaps = 9/230 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++ +D+ ++ YF EGY V+ +G E+M D+++LD+ +P+ +G Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + +R +S+V +I++T + D IDRI+GLEMGADDY++KP REL+ R+K +L R Sbjct: 63 TLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQE 122 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 R+ P +G L T+ +GE ++LT +EY +L + PG++L+++ L Sbjct: 123 REDDPTAD---IDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELS 179 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAAD 228 R++ D R++D+ I LR K+ + T G GY ++ Sbjct: 180 EKALGRKLTMYD-RSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSN 228 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 10/231 (4%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++V+DEP A + + + GY V+ ASG+ E+ + + LI+LD+ LP +G Sbjct: 10 RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69 Query: 64 LTRALRE---RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + LR V ++++T R + DRI GL +GADDY+TKP ELV+RV +L R Sbjct: 70 VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRT 129 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + + ++ + T+ DG+ ++LT E+++L+ G + R Sbjct: 130 G----SATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRG 185 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLAADV 229 LL + + RTVD+ ++RLR KL A +L+ T G GY L A Sbjct: 186 HLLETVW-EAAPDIQTRTVDMHVQRLRSKLGAAGELIETVRGFGYRLRASA 235 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 14/231 (6%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 I++VED ++ Y EG+ V + G ++ + + D I+LDI LP +G+ Sbjct: 2 KILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIE 61 Query: 64 LTRALR--ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR E+S V I+++T +R+ GL +GADDY+ KP +LRELV RV+ L+ R Sbjct: 62 ICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRNQ 121 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + RQ ++ +N+ + GEP+ L+ E+ +L F+ NPG + SRE+ Sbjct: 122 VVRQ-------ETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQ 174 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLS----ADLLVTQHGEGYFLAAD 228 +L L E VDV + LR KL + + T H GY L + Sbjct: 175 ILDKLWESGFEPR-SNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLKKE 224 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 8/235 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 +HI++V+D+ + L Y G+ VS A+G + ++ + V+LI+LD+ LP E+G Sbjct: 4 QNHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDG 63 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L R +R + + II++T + +DRI+GLE+GADDY+ KP + REL+ R+K +L R Sbjct: 64 LSLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTR 123 Query: 122 LARQAQPHTQD-NCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 R + + F G+ L+ + +G + L ++Y +L A + +P LSR Sbjct: 124 NDRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSR 183 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 + L+ + + D R++DV I RLRH + AD ++ T GY LA+ V Sbjct: 184 DFLVEHVYGKESHAMD-RSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQV 237 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 117/234 (50%), Gaps = 11/234 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+IVEDEP L Y Y ++ + G + ++ DLILLD+ LP +G Sbjct: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L R +R S + I++VT + + IDR++GLE+GADDY+ KP RE+V RVK +L R Sbjct: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 R+ Q ++ ++ R G+ + LT AE+ +L PG++ SRE+ Sbjct: 130 PQRELQQQDAES-----PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADVC 230 LL L RT+D I+ LR KL + +G GY AD C Sbjct: 185 LLNHLY-DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 17/239 (7%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENG 61 I++VED + +F +E + G E D+I LD+NLP +G Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 62 LMLTRALRERSTV-GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + + + +RE+S V II++T R D+++GLE+GADDYVTKP L+ R+K L R Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 121 DLARQAQPHTQDNCYRFAG---------YCLNVSRHTLERDGEPI-KLTRAEYEMLVAFV 170 +L + + ++ EPI LT E+++L Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 171 TNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS---ADLLVTQHGEGYFLA 226 NP ++ SRE+LL ++ + D RTVD I++LR K+ ++ T G GY Sbjct: 182 KNPRQVFSREQLLELVWDYQYFG-DERTVDAHIKKLRQKIEEVGPQVIQTVWGVGYKFD 239 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 8/222 (3%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 +++VEDEP ++ Y T++G+ V + G + +LDI LP G + Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 65 TRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 R LRE ++ +T R D +DRI+GLE+GADDYVTKP RELV RV+ +L R Sbjct: 71 CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRT--- 127 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 P + L+ +R T+ GEPI+LT E+++L + PG + +R LL Sbjct: 128 -VGVPEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELL 186 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLS--ADLLVTQHGEGY 223 + + RTVDV + ++R KL A ++ T G GY Sbjct: 187 AAVWGY-AAHSSTRTVDVHVAQVRAKLGGAAGVIRTHRGVGY 227 >UniRef50_A6M2A3 Two component transcriptional regulator, winged helix family n=13 Tax=Clostridium RepID=A6M2A3_CLOB8 Length = 242 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 21/243 (8%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++VEDE L+ ++E + V +G +I + L+LLDI LPD +G Sbjct: 3 KKKILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDISG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI- 120 L + + ++S I+++T R D ID+I+G+E+GADDY+TKP E+RE+ R+ + R+ Sbjct: 63 FELCKIMSQKS--YIVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRRVS 120 Query: 121 ------DLARQAQPHTQDNCYRFAG-------YCLNVSRHTLERDGEPIKLTRAEYEMLV 167 + A ++++ G + +N T+ +DG+ I L R E+++L Sbjct: 121 KNIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEFDLLS 180 Query: 168 AFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD----LLVTQHGEGY 223 N G + +R++LL + D RTVDV IRRLR L D ++ T G GY Sbjct: 181 YLYKNKGIVFNRQQLLNEVWGYDYYG-DTRTVDVHIRRLRANLGDDKENSIVETVFGVGY 239 Query: 224 FLA 226 + Sbjct: 240 VIR 242 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 11/230 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 + I++ EDE ++ + + G+ V +G + D++LLD+ +P+ +G Sbjct: 2 NRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGF 61 Query: 63 MLTRALRE-RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 A+R+ VGII++T R+ D+I GL GADDY+ KP ELV R++ LL R++ Sbjct: 62 EACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRVE 121 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 ++ + + ++++ + + G+ I LT EY+++ V N +LSR+ Sbjct: 122 KVKR----KDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDA 177 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 LL + D +TVDV IRRLR K+ D + T G GY Sbjct: 178 LLDAVWGVNYFG-DRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWR 226 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 115/232 (49%), Gaps = 8/232 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I++VED+ + ++ E Y V +G +++ ++++DL++LDI +P NG Sbjct: 8 KGKILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLL-DETIDLVILDIMMPKLNG 66 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L + +R+ S V ++ +T +S D+++GL +G DDY+ KP EL+ RVK LL R Sbjct: 67 LKVCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRRYQ 126 Query: 122 --LARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + + + LN + + + DG ++++ EY++L + +PG+I S Sbjct: 127 VYQGKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIFST 186 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLA 226 + + + TV V IR+LR K+ D + T G+GY Sbjct: 187 QNIYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFE 238 >UniRef50_C6D1N2 Two component transcriptional regulator, winged helix family n=3 Tax=Bacillales RepID=C6D1N2_PAESJ Length = 232 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++VED+ + + +EGYTV A G E + D+I+LDI +P NG Sbjct: 2 KVLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGYE 61 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R L ++ G++L+T ++D +D+++GLE+GADDY+TKP ++RE++ RVK L R Sbjct: 62 VFRKLNQKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSHFT 121 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + G + T+ DG+ + LT E+++LV NP ++ SR+ LL Sbjct: 122 TFKNSEIEKVTTEMGGLSIEPYSRTVRMDGQELDLTLKEFDLLVELACNPDQVYSRKVLL 181 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFL 225 + + RTVD+ I+RLR KL L+ T +G GY Sbjct: 182 KKVWDIHYAGG-TRTVDIHIQRLRKKLGRWHGLIQTINGIGYKF 224 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 11/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M +IVED+ + L+ F EG+ V + G + + S D+I+LD+ +P + Sbjct: 1 MSLKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKID 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G+ + + LR +S + II++T +S D++ GLE GADDY+TKP +EL++RVK +L R Sbjct: 61 GVKVCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRY 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + Q+ +++ + G+ I LT E+E+L NP + + RE Sbjct: 121 NK-------VQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRRE 173 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA---DLLVTQHGEGYFLAAD 228 LL + + D VDV I+ +R+KL L++T G GY L+ + Sbjct: 174 VLLNKVWGIASD-YDSNIVDVYIKNIRNKLEDKPPKLILTIRGRGYMLSTE 223 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 17/232 (7%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H+++VEDE ++ Y G+ VS+ G E + +L++LD+ +P +GL Sbjct: 2 KHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDGL 61 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R +RE+S + II+VT R++ IDR++GL MGADDYV KP +ELV RV+ +L R+D Sbjct: 62 TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLDR 121 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + + + + ++ ++ + + + LT E+ +L F+ + G++ SR +L Sbjct: 122 KAEPEQNDL--------FRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQL 173 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSA--------DLLVTQHGEGYFLA 226 L ++ + D R +D I+ LR K+S + + +G GY Sbjct: 174 LDHINPDSFDVAD-RVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFE 224 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 87/234 (37%), Positives = 128/234 (54%), Gaps = 9/234 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 HI+IVED+P L G+ S SGA + +M Q DLI+LD LP E+G Sbjct: 12 QAHILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDG 71 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 + R LR +V I+++T + IDRI+GLE+GADDYVTKP REL+ R+K++L R Sbjct: 72 FSICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRAS 131 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 A + F+G+ ++ L DG + +T AE+++L+AF NP ++L+RE Sbjct: 132 YAHHQEEALGP--MMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTRE 189 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLAADV 229 +LL M A P R++D I R+R K+ +L + T GY A+ V Sbjct: 190 QLLSMTHAGSA-GPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKV 242 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 25/247 (10%) Query: 1 MPHH----IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINL 56 M + IV+V+DEP + L + G+ V ASG+ E+++ + +LI++D+ L Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60 Query: 57 PDENGLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKN 115 PD +G +TR +R+ V ++ +T R D D+I+GL +G DDYVTKP L E+V R++ Sbjct: 61 PDIDGFTVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA 120 Query: 116 LLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGE 175 +L R +P + + + A +N H + R G PI+L+ EY++L + N G Sbjct: 121 ILRRTQ-----EPDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGR 175 Query: 176 ILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--------------DLLVTQHGE 221 +LS+ ++L + D V+ I LR K+ L+ T+ G Sbjct: 176 VLSKSQILNHVWQYDW-GGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGI 234 Query: 222 GYFLAAD 228 GY + Sbjct: 235 GYMIREP 241 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 13/230 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 HI+++EDE +++ T EGY VSV + G +Q+ DL+LLD LP +G Sbjct: 8 SAHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISG 67 Query: 62 LMLTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 L + R LR V ++L+T R + DR GL+ GADDYV KP ++EL+ R++ L Sbjct: 68 LEICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR-- 125 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 ++D F L+ + R ++LT EY++L + +P ++L+R+ Sbjct: 126 -----QPRRSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQ 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD----LLVTQHGEGYFLA 226 ++L + D ++V IR LR K+ L+ T G GY L Sbjct: 181 QILEHVWGCDFTG-DSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLR 229 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 124/236 (52%), Gaps = 10/236 (4%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 H I+IVEDE + + LQ F E Y V G + LILLD+ LP ++G Sbjct: 3 QHRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKSG 62 Query: 62 LMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 + R +R++ II++T +++ ++ GL+MGADDYVTKP + EL+ RVK L RI Sbjct: 63 FEVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRRI 122 Query: 121 DLARQAQPHTQ---DNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 DL QA P Q + FA L+ + + G P++L+ E+++L F GE++ Sbjct: 123 DLQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEVV 182 Query: 178 SRERLLRMLSARRVEN-PDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAA 227 RE LL+ L EN P RT+D I LR KL D ++++ G GY A Sbjct: 183 LREDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFDA 238 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 89/233 (38%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 H I IV+D+ ++ L Y + G++ + EI + LI++DI LP NGL Sbjct: 5 HTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNGL 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 L R LR STV +I +T D DRIVGLE+GADDY++KP E REL+ R++ +L R + Sbjct: 65 ELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTEG 124 Query: 123 ARQAQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 + + +FAG+ L+ +RH + DG + L+ EY +L F+ NP +LSR+ Sbjct: 125 GARRD-QPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRVLSRDE 183 Query: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLAADV 229 LL R D R++DV I RLR +L L+ T G+GY LA DV Sbjct: 184 LLERTQGRNAVPYD-RSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATDV 235 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 112/236 (47%), Gaps = 15/236 (6%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I ++ED+ +Q GY + + ++ A L + Q L +LDI +P + Sbjct: 1 MSQTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGD 60 Query: 61 GLMLTRALRER---STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 GL + R LR S++ II VT R+ DR++GLE+GADDY+TKP REL+ RVK +L Sbjct: 61 GLDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVL 120 Query: 118 WRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEIL 177 R + F ++ S L+ GE T E+ +L +PG + Sbjct: 121 RRFERPSTPS------LISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVF 174 Query: 178 SRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 SR+ LL + R+VDV +RR+R K+ +D L T G GY Sbjct: 175 SRDHLLDAVWG-DARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFEIP 229 >UniRef50_B5ZZQ5 Two component transcriptional regulator, winged helix family n=12 Tax=Alphaproteobacteria RepID=B5ZZQ5_RHILW Length = 234 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 7/232 (3%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++V+DEP + + + G + +G + +DLI+LDI +PD + Sbjct: 1 MAPRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 GL + R +R+ S + I+ ++ R + ID+++GLE+G DDYVTKP RELV RVK +L R Sbjct: 61 GLDVCRQIRKTSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRS 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 +A+P + + L+ T+ I +T E+ +L A ++ P + SRE Sbjct: 121 G--NEAEPERRRAIFVAGELSLDRQGRTVMFGDSAISMTVLEFAILDALLSRPDMVFSRE 178 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFLAAD 228 RL+ D RT+D IR +R K ++ T HG G+ L ++ Sbjct: 179 RLMEAAYGAGTYVAD-RTIDSHIRNIRAKFLAAGGQGIIATVHGIGFKLGSE 229 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 24/244 (9%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 I+IVED P+ ++ + +E ++V ++++ LI+LDI L D NG Sbjct: 8 SPLIMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNG 67 Query: 62 LMLTRALR---------ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVR 112 L R +R + V I++++ R+D DR+ G GADDY+TKP EL R Sbjct: 68 CDLCRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFR 127 Query: 113 VKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTN 172 +K++L R A C ++ R + + P++LT E+E+L ++ Sbjct: 128 IKSILRRSIGLSIA-------CIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASH 180 Query: 173 PGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS-------ADLLVTQHGEGYFL 225 PG + SRE LL + + RTVDV + RLRHKL +++ T+ G GY L Sbjct: 181 PGRVFSREELLERVWGYSYMG-NTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKL 239 Query: 226 AADV 229 + Sbjct: 240 ESPA 243 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 21/239 (8%) Query: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 IV+V+DEP + L + G+ V+ ASG+ E+++ DLI+LD+ LPD +G + Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 65 TRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 TR +R+ ++ +T R D D+++GL +G DDYVTKP L E+V R++ +L R Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ-- 131 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLL 183 + D R +N H + R G+PI L+ EY++L + N G +LS+ ++L Sbjct: 132 ---EQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQIL 188 Query: 184 RMLSARRVENPDLRTVDVLIRRLRHKLS--------------ADLLVTQHGEGYFLAAD 228 + D V+ I LR K+ L+ T+ G GY + A Sbjct: 189 DHVWQYDW-GGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRAP 246 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 112/226 (49%), Gaps = 9/226 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 +++V+DE ++ L GY V+ A+G + + DLILLD+NLPD G Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 64 LTRALRERST-VGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + R LR+R V ++ +TG DR+ GL+MG DD+VTKP EL+E+ RV+ LL R Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 +P N R L+ H + P+ LT E+ +L + NPG +LSR ++ Sbjct: 148 ---GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQI 204 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD---LLVTQHGEGYFL 225 + R E VD I LR KL L+ T G GY L Sbjct: 205 QERVWNHRDEGSG--VVDTYIYYLRRKLGEPGQSLIRTVRGVGYQL 248 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 13/232 (5%) Query: 1 MPH-HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDE 59 M + ++IVEDE L+ Y +EGY VS+ G + ++ Q++ +ILLDI LP Sbjct: 1 MSNEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRL 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G + R +R+ S V II++T + + +DRI+G E+G DDY+ KP RE+V RV +L R Sbjct: 61 DGKTVCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + D+ LN + E +G + LT +E+++ + +P + +R Sbjct: 121 TF------KKSSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTR 174 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKL-----SADLLVTQHGEGYFLA 226 +L+ + + + RT+D I+ LR K+ ++ + +G GY + Sbjct: 175 AQLIEKVQGYNYDGYE-RTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKIV 225 >UniRef50_C6PCT6 Two component transcriptional regulator, winged helix family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCT6_CLOTS Length = 224 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I I++D+ + + Y +EGY V + + E D+++LDI +P + Sbjct: 1 MSELIYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMD 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L + +R+ S V II+V+ R + +D+I+GLE+G+DDY+ KP REL+ R+K++ R+ Sbjct: 61 GYELCKEIRKISDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRV 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + +++ N R + + +GE + T E+E++ N + +RE Sbjct: 121 KMPKRS------NEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTRE 174 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL---SADL-LVTQHGEGYFLAA 227 +LL + + R VD +++R+R KL + + T G GY + + Sbjct: 175 QLLEKVWKYDSF-TETRAVDDMVKRVRKKLQSYGCEFNISTIWGYGYKVES 224 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 12/230 (5%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYT-VSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 I+IV+DE L++ +EG+ + +G G + + DLILLDI LPD + Sbjct: 10 TKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLD 69 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G + +R+ + V I ++ +++ +D+I+GL +G DDY+TKP +E+ ++K R Sbjct: 70 GYSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRN 129 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 N Y+F ++ ++ T+ R G + LT E+ +L+ + NP +I S+ Sbjct: 130 QY-----KEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKA 184 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFL 225 RL + D + V +R LR K+ + L+T G GY L Sbjct: 185 RLYEAVWGETYLGND-NIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKL 233 >UniRef50_C0ZIT9 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZIT9_BREBN Length = 226 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 12/231 (5%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I+I +D+P + L+ Y +EGY V G ++++ +SV L ++D+ +P +N Sbjct: 1 MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMPGKN 60 Query: 61 GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 G L R +RE + +IL+T + + D+ G G DDY+TKP E EL+ R+K LL R Sbjct: 61 GWELCREIREFYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALLRRY 120 Query: 121 DLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 + ++ H ++ E I L E+E+L + P I +R+ Sbjct: 121 QM-------VSKQIIVLNDTVIDRISHVVKVKEELIHLPLKEFELLAQLASFPDRIFTRD 173 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKL----SADLLVTQHGEGYFLAA 227 +LL ++ E D RT+DV I+RLR K + ++ T G GY L Sbjct: 174 QLLELVWGGDTE-SDSRTIDVHIKRLREKFTEKTNDFVISTVRGLGYKLEV 223 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 289 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 118/234 (50%), Gaps = 11/234 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDEN 60 M I++ ED+P L EGY V G QS DLILLD+ LP + Sbjct: 1 MTPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRS 60 Query: 61 GLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 G + + LRE V I+++T R + +D++VGL+ GADDY+TKP E+ EL+ R++ LL R Sbjct: 61 GFDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + ++ G ++ R + R G+P+ L+ EY +L + + GE ++R Sbjct: 121 A----PVRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTR 176 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAAD 228 E LL + D RTVDV + LR KL + L T G GY L+ + Sbjct: 177 EDLLTQVWGYSA-TTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDE 229 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 289 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 110/231 (47%), Positives = 147/231 (63%), Gaps = 9/231 (3%) Query: 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG 61 HHI++VED+PV + L +Y +EGY VS G +R++ Q+VDLILLDI LP +G Sbjct: 3 NHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDG 62 Query: 62 LMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 L L R +R +S VG+I+VTG+ D +DRIV LEMGADDYVTKP +REL+ R KNLL R Sbjct: 63 LQLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTL 122 Query: 122 LARQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRE 180 AR+A FAG+ L++ R L DG ++LTR E+E+L F + PG +++R+ Sbjct: 123 SAREASEDENQK--SFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMTRD 180 Query: 181 RLLRMLSARRVENPDLRTVDVLIRRLRHKLSADL-----LVTQHGEGYFLA 226 LL +S R D RTVDVL+ RLR K+ AD ++T HG GY A Sbjct: 181 NLLDYVSHRDWAPSD-RTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFA 230 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 8/231 (3%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 ++IV+DE ++SY +EG V G E+ + + DLI+LD+ LPD G Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64 Query: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDL 122 + +R+RS V II++T + D I GL MGADDY+TKP REL+ R+ + R L Sbjct: 65 EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRR--L 122 Query: 123 ARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + P + + + +++ + + ++GE I LT +Y++L+ + P + +RE L Sbjct: 123 NEEVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREEL 182 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLS-----ADLLVTQHGEGYFLAAD 228 + + D R VD ++ +R K+ ++T HG GY + Sbjct: 183 ISTALGDDYDGYD-RNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGE 232 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 124/232 (53%), Gaps = 9/232 (3%) Query: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 H++IVED+ L T+ G V + +GA + + NQ DLI+LDI LP ENGL Sbjct: 28 HVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGENGLS 87 Query: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA 123 + R LR + V ++++T + IDRI GLE+GADDYVTKP REL R++ LL R Sbjct: 88 ICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRTAY- 146 Query: 124 RQAQPHTQDNCYRFAGYCLNVSRHTLE-RDGEPIKLTRAEYEMLVAFVTNPGEILSRERL 182 + RF G+ L+ R L + T E+++L+AF NPG +LSRE L Sbjct: 147 -APDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGRVLSREEL 205 Query: 183 LRMLSARRVENPDLRTVDVLIRRLRHKLSAD-----LLVTQHGEGYFLAADV 229 L ++ + P R+VDV + R+R K+ D LL T GY A V Sbjct: 206 L-SVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIFTATV 256 >UniRef50_B0P738 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P738_9FIRM Length = 224 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 11/229 (4%) Query: 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-NQSVDLILLDINLPDE 59 M + I++ EDE + + SY +EG+ V A G E + N+ V L++LD+ +P + Sbjct: 1 MDNKILVAEDEEKIRRLVSSYLVREGFKVVEAADGQQAVEKFEDNEDVVLVMLDVMMPKK 60 Query: 60 NGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 +G R +R +S V I+++T R D + G GAD+Y+ KP LV RVKNLL R Sbjct: 61 DGYDACREIRGKSNVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKNLLRR 120 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSR 179 + G + T+ DG+ I T E+++L + N +L+R Sbjct: 121 TSSNDMSD-------VSAGGVKVLYRERTVTVDGKKIITTPKEFDLLYYLIRNTNIVLTR 173 Query: 180 ERLLRMLSARRVENPDLRTVDVLIRRLRHKLSA--DLLVTQHGEGYFLA 226 ++++ + D RTVD I+ LR KL +VT GY Sbjct: 174 DQIICTVWDMDYAG-DDRTVDTHIKCLRAKLGPYAKCIVTVRKVGYKFE 221 >UniRef50_C6VZ09 Two component transcriptional regulator, winged helix family n=28 Tax=Bacteroidetes RepID=C6VZ09_DYAFD Length = 236 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGL 62 +++V+D+ L+ T+EGY+V ++G +I + DLILLDI +P +G+ Sbjct: 11 PKVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDGI 70 Query: 63 MLTRALRERSTV---GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 R LR+ + I+ +T RS+ + E+GADDY+TKP++ R L+ R+ L R Sbjct: 71 ETGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFRR 130 Query: 120 IDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEP-IKLTRAEYEMLVAFVTNPGEILS 178 +AQ + +N +T+ + GE L + E+E+L P ++ S Sbjct: 131 -----EAQKAESGDTIEILDLSINRKNYTVTQGGEKSTVLPKKEFELLFFLAQTPNKVFS 185 Query: 179 RERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAAD 228 R+ LL+ + + + RTVDV IR+LR KL + T G GY + + Sbjct: 186 RDELLQKIWGADIYVLE-RTVDVHIRKLREKLGDTYIKTLKGVGYMFSNE 234 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.219 0.866 Lambda K H 0.267 0.0671 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,382,383,532 Number of Sequences: 3077464 Number of extensions: 170336382 Number of successful extensions: 512638 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 33386 Number of HSP's successfully gapped in prelim test: 16219 Number of HSP's that attempted gapping in prelim test: 400627 Number of HSP's gapped (non-prelim): 58579 length of query: 230 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 106 effective length of database: 658,790,820 effective search space: 69831826920 effective search space used: 69831826920 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 93 (39.7 bits)