48 c1rnlA_ Probab=99.87   E-value=1.7e-21  Score=147.28  Aligned_columns=179  Identities=25%

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             7748996499899999999999889--8999999989999999727898388414688878421111101112-333222
Q batch____         2 PHHIVIVEDEPVTQARLQSYFTQEG--YTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERS-TVGIIL   78 (230)
Q Consensus         2 ~~~ILiVdDd~~~~~~l~~~L~~~g--~~V~~a~~~~eal~~~~~~~~dlvi~D~~mp~~~g~~~~~~~~~~~-~~~ii~   78 (230)
                      |.|||||||||.++..+..+|+..+  ..|.+|.|+.||++.+.+..||++++|+.||+++|...++.++... ..++++
T Consensus         2 pi~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~eal~~~~~~~pdiilld~~l~~~~g~~~~~~~~~~~~~~~~~~   81 (200)
T c1rnlA_           2 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVV   81 (200)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTCGGGCHHHHHHHHTTSCCCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             70899974998999999999984898179999789899999998719975542111110001368999742031001234


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             45112167755566642000110113420248999998987640000112222222222222344100011233210001
Q batch____        79 VTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKL  158 (230)
Q Consensus        79 lt~~~~~~~~~~~~~~ga~~yl~Kp~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (230)
                      +++.........+...++.++..++.....+...........................                     +
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------l  140 (200)
T c1rnlA_          82 FSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLQ---------------------L  140 (200)
T ss_dssp             ECSCSCHHHHHHHHHTTCSEEECTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHCC---------------------C
T ss_pred             CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------------C
T ss_conf             4453101110000112222221001222222222222222222222222211111111---------------------2


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             12111100002346432213899999761446678733799999999996218
Q batch____       159 TRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLS  211 (230)
Q Consensus       159 ~~~e~~~l~~l~~~~~~v~s~~~l~~~v~~~~~~~~~~~ti~~~I~rLR~KL~  211 (230)
                      +.+|..++..+...    .|..+|.+.+      +.|.+||++|+++|++||+
T Consensus       141 t~re~~vl~~~~~g----~s~keIA~~L------~iS~~TV~~h~~~i~~KL~  183 (200)
T c1rnlA_         141 TPRERDILKLIAQG----LPNKMIARRL------DITESTVKVHVKHMLKKMK  183 (200)
T ss_dssp             CHHHHHHHHHHHTT----CCHHHHHHHH------TCCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCC----CCHHHHHHHH------CCCCHHHHHHHHHHHHHCC
T ss_conf             22111112224567----7689989886------8870699999999999817