157 c3civA_ Probab=39.64   E-value=20  Score=14.07  Aligned_columns=251  Identities=13%

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEECCHHCC---CHHHHHHHHHHCCCEEEEEECCCCCCCCHHH
Q ss_conf             8999999999978863997039995240116766221036700189---9899999999879869998528767787667
Q batch____       281 YDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFP---DPEGMIRRLKAKGLKICVWINPYIGQKSPVF  357 (772)
Q Consensus       281 ~~~~~v~~v~~~~r~~~iP~d~~~~D~~~~~~~~~~~ft~d~~~FP---dp~~~i~~L~~~g~~~~~~i~P~i~~~~~~~  357 (772)
                      ++...+.+.++.+++.++=.=-+-+ .-++.........+.....+   ....+++..+++|+++++-.++....+...-
T Consensus        23 ~~~~~~~~~l~~l~~~G~N~vRi~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~~Gl~Vil~~h~~~~~~~w~~  101 (316)
T c3civA_          23 WGTDEARASMRALAEQPFNWVTLAF-AGLMEHPGDPAIAYGPPVTVSDDEIASMAELAHALGLKVCLKPTVNCRDGTWRG  101 (316)
T ss_dssp             GGSHHHHHHHHHHHHSSCSEEEEEE-EEEESSTTCCCCBCSTTTBCCHHHHHHHHHHHHHTTCEEEEEEEEEETTCCCGG
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf             8836899999999983998999823-247777677654447677679789999999998689879997235888876555


Q ss_pred             HHHHHCCCEEECCCCCEEEEEE-----------ECCCCEEEECCC-----HHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             8899889888978997535675-----------446621432778-----899999999989898759848995288856
Q batch____       358 KELQEKGYLLKRPDGSLWQWDK-----------WQPGLAIYDFTN-----PDACKWYADKLKGLVAMGVDCFKTDFGERI  421 (772)
Q Consensus       358 ~e~~~~~~~vk~~~g~~~~~~~-----------w~g~~~~~Dftn-----p~a~~ww~~~~~~~~~~Gvd~~w~D~~E~~  421 (772)
                      ..........+......+...+           |.-..-.+...|     ....+|+.+.++.....--..+-...+...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~nE~~~~gne~~~~~~~~~~~~~~~~~ir~~dp~~~~~~~~~~~  181 (316)
T c3civA_         102 EIRFEKEHGPDLESWEAWFGSYSDMMAHYAHVAKRTGCEMFCVGCEMTTAEPHEAMWRETIARVRTEYDGLVTYNCNHGR  181 (316)
T ss_dssp             GCCCSBSCCTTSSBHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             66767860125576999999999999879999874199858506777760014678999999999746997799446886


Q ss_pred             CCCEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEEECCC---CCCCCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf             7760106899824203421789999999999986588-870899984588---998851786576666888999999999
Q batch____       422 PTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGE-EEAVLFARSASV---GAQKFPVHWGGDCYANYESMAESLRGG  497 (772)
Q Consensus       422 p~d~~~~~g~~~~~~hN~Y~~~~~~~~~e~l~~~~~~-~RpfilsRs~~a---Gsqry~~~WtGD~~s~W~~L~~~i~~~  497 (772)
                      .....+....+-..+|..++........+.++..... .+|++++.-|++   |....+..|.+....+-+.-+..+...
T Consensus       182 ~~~~~~~~~~D~ig~~~Y~~~~~~~~~~~~~~~~~~~~~kPi~i~E~G~~~~~g~~~~~~~~~~~~~~~~~~Qa~~~~~~  261 (316)
T c3civA_         182 EEHVRFWDAVDLISSSAYYPIDRWRDRVPVLREVAEAHEKPLFFMEVGCPSRSGSGACPWDYRHPGAVCLDEQARFYEAM  261 (316)
T ss_dssp             TTTCSCGGGSSEEEEECCCCGGGHHHHHHHHHHHHHHHTCCEEEEEECCCSBTTGGGSTTCTTCCCCBCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             33345333457676314777430688999865465305885799701452235776676576664456989999999999


Q ss_pred             HHHHHC-----CCCCC-----------CCCCCCCC--CCCCHHHHHHHHHHHH
Q ss_conf             986422-----87420-----------55568999--7889999999999998
Q batch____       498 LSIGLS-----GFGFW-----------SHDIGGFE--NTAPAHVYKRWCAFGL  532 (772)
Q Consensus       498 L~~~ls-----G~p~~-----------g~DIgGF~--g~~~~EL~~RW~Q~ga  532 (772)
                      +..-.+     |+.+|           +.+-.||.  |.|-.+...++++--+
T Consensus       262 ~~~~~~~~~~~G~~~W~w~~~~~~~~~~~~d~~f~~~~Kpa~~v~~~~~~~~~  314 (316)
T c3civA_         262 FAAMPDEPWFKGYMLWEWPWKLYPREAASEDGSYCIYGKPAEDVVARAFSAIA  314 (316)
T ss_dssp             HHHSCCCTTEEEEEEEEECSSCCCGGGGGGCCSSCCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf             99985377802599986168788733256488520776218999999998873