BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (253 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 526 e-148 UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Ent... 282 8e-75 UniRef50_B5F2H2 Porin thermoregulatory protein EnvY n=1 Tax=Salm... 201 2e-50 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 134 4e-30 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 132 1e-29 UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 95 2e-18 UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 92 1e-17 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 88 2e-16 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 88 3e-16 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 87 5e-16 UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escheric... 87 8e-16 UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 87 8e-16 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 86 8e-16 UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonel... 86 1e-15 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 85 2e-15 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 80 6e-14 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 79 1e-13 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 79 1e-13 UniRef50_Q04819 ORF11 n=5 Tax=Salmonella enterica subsp. enteric... 79 1e-13 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 79 1e-13 UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11... 77 7e-13 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 76 9e-13 UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory ... 76 1e-12 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 75 2e-12 UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=E... 75 2e-12 UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Esch... 75 3e-12 UniRef50_P0A2T2 Virulence regulon transcriptional activator virF... 75 3e-12 UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 T... 74 4e-12 UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n... 74 5e-12 UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 ... 73 1e-11 UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vi... 72 1e-11 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 72 2e-11 UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax... 70 5e-11 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 70 8e-11 UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio... 67 4e-10 UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=P... 67 5e-10 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 67 6e-10 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 67 6e-10 UniRef50_Q169B6 Transcriptional regulator, AraC family, putative... 65 3e-09 UniRef50_P23774 987P fimbrial operon positive regulatory protein... 65 3e-09 UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromob... 64 4e-09 UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein ... 64 5e-09 UniRef50_B7ALJ8 Sensor protein n=1 Tax=Bacteroides eggerthii DSM... 64 5e-09 UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=G... 64 5e-09 UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_... 64 7e-09 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 63 7e-09 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 63 9e-09 UniRef50_B2Q5D0 Putative uncharacterized protein n=1 Tax=Provide... 63 1e-08 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 63 1e-08 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 62 1e-08 UniRef50_D2QQS8 Histidine kinase n=1 Tax=Spirosoma linguale DSM ... 62 2e-08 UniRef50_A6KYM2 Sensor protein n=17 Tax=Bacteroides RepID=A6KYM2... 62 2e-08 UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein ... 62 2e-08 UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein ... 62 2e-08 UniRef50_Q5DYJ4 Transcriptional regulator, AraC family n=1 Tax=V... 62 2e-08 UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecali... 62 2e-08 UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC ... 62 2e-08 UniRef50_C3K2A2 Putative putative AraC-family regulatory protein... 61 3e-08 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 61 4e-08 UniRef50_Q1N1T2 AraC-type DNA-binding domain-containing protein ... 61 4e-08 UniRef50_B6XD52 Putative uncharacterized protein n=2 Tax=Provide... 61 4e-08 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 61 4e-08 UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=... 61 5e-08 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 60 5e-08 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 60 5e-08 UniRef50_Q8GBY6 Sensor protein n=1 Tax=Prevotella bryantii RepID... 60 6e-08 UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC... 60 6e-08 UniRef50_D2EZ28 Sensor protein n=1 Tax=Bacteroides sp. D20 RepID... 60 9e-08 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 59 1e-07 UniRef50_C3J952 Sensor protein n=5 Tax=Bacteria RepID=C3J952_9PORP 59 1e-07 UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serra... 59 1e-07 UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillu... 59 1e-07 UniRef50_B3C929 Sensor protein n=8 Tax=Bacteroides RepID=B3C929_... 59 1e-07 UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF... 59 2e-07 UniRef50_A7M014 Sensor protein n=1 Tax=Bacteroides ovatus ATCC 8... 59 2e-07 UniRef50_P68913 Uncharacterized HTH-type transcriptional regulat... 59 2e-07 UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 ... 59 2e-07 UniRef50_A6B243 Transcriptional activator of virulence loci n=4 ... 59 2e-07 UniRef50_A5W7M3 Transcriptional regulator, AraC family n=3 Tax=P... 59 2e-07 UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=P... 58 2e-07 UniRef50_A3J4H6 Two-component system sensor histidine kinase/res... 58 2e-07 UniRef50_A9U895 Predicted protein (Fragment) n=1 Tax=Physcomitre... 58 2e-07 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 58 4e-07 UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC ... 57 4e-07 UniRef50_Q0VQ50 Transcriptional regulator, AraC family n=2 Tax=A... 57 5e-07 UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1... 57 5e-07 UniRef50_C6D7J5 Two component transcriptional regulator, AraC fa... 57 5e-07 UniRef50_UPI0000F30067 putative transcriptional regulator AraC/X... 57 5e-07 UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=C... 57 6e-07 UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmone... 57 6e-07 UniRef50_C5ET72 Predicted protein n=1 Tax=Clostridiales bacteriu... 57 6e-07 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 57 6e-07 UniRef50_A6EEH6 Two-component system sensor histidine kinase/res... 57 6e-07 UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein ... 57 7e-07 UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein ... 57 7e-07 UniRef50_B3CHH8 Sensor protein n=3 Tax=Bacteria RepID=B3CHH8_9BACE 57 7e-07 UniRef50_Q1GKL0 Transcriptional regulator, AraC family n=2 Tax=R... 57 7e-07 UniRef50_A0Z5W5 Transcriptional Regulator, AraC family protein n... 57 8e-07 UniRef50_C6CVB2 Two component transcriptional regulator, AraC fa... 57 8e-07 UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=A... 57 8e-07 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 56 9e-07 UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_... 56 1e-06 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 56 1e-06 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 56 1e-06 UniRef50_Q5LKF5 Transcriptional regulator, AraC family n=1 Tax=R... 56 1e-06 UniRef50_B0NYF7 Putative uncharacterized protein n=1 Tax=Clostri... 56 1e-06 UniRef50_Q0TS33 Transcriptional regulator, AraC family n=6 Tax=C... 56 1e-06 UniRef50_A3M2M8 Transcriptional Regulator (AraC family) n=8 Tax=... 56 1e-06 UniRef50_C6Y0D7 Sensor protein n=1 Tax=Pedobacter heparinus DSM ... 56 1e-06 UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V... 56 1e-06 UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=S... 56 1e-06 UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n... 55 2e-06 UniRef50_B5JY44 Transcriptional regulator, AraC family, putative... 55 2e-06 UniRef50_C6CWQ4 Two component transcriptional regulator, AraC fa... 55 2e-06 UniRef50_A9KRK4 Transcriptional regulator, AraC family n=1 Tax=C... 55 2e-06 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 55 2e-06 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 55 2e-06 UniRef50_D1PFT7 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 55 2e-06 UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photob... 55 2e-06 UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=B... 55 2e-06 UniRef50_C0ECP0 Putative uncharacterized protein n=1 Tax=Clostri... 55 2e-06 UniRef50_Q1GDX2 Transcriptional regulator, AraC family n=2 Tax=R... 55 2e-06 UniRef50_D0IBR3 Signal transduction histidine kinase n=1 Tax=Gri... 55 3e-06 UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing... 55 3e-06 UniRef50_B6BG36 Transcriptional Regulator, AraC family, putative... 55 3e-06 UniRef50_UPI0001968F18 hypothetical protein BACCELL_00802 n=1 Ta... 55 3e-06 UniRef50_C7CT88 Predicted protein n=22 Tax=Enterococcus faecalis... 55 3e-06 UniRef50_A1TJQ7 Transcriptional regulator, AraC family n=2 Tax=A... 55 3e-06 UniRef50_UPI0001B4CF35 putative AraC family regulatory protein n... 55 3e-06 UniRef50_C6W299 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 55 3e-06 UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n... 54 3e-06 UniRef50_B2JV94 Transcriptional regulator, AraC family n=17 Tax=... 54 3e-06 UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein ... 54 3e-06 UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC ... 54 4e-06 UniRef50_C0EGH4 Putative uncharacterized protein n=1 Tax=Clostri... 54 4e-06 UniRef50_A6GTF5 Transcriptional regulator, AraC family protein n... 54 4e-06 UniRef50_C6VNG3 Response regulator n=3 Tax=Lactobacillus plantar... 54 4e-06 UniRef50_A1ZWA4 Activator protein MtlR n=1 Tax=Microscilla marin... 54 4e-06 UniRef50_A4CH85 Serine/threonine kinase n=3 Tax=Bacteroidetes Re... 54 5e-06 UniRef50_A6LW09 Response regulator receiver protein n=2 Tax=Clos... 54 5e-06 UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33... 54 5e-06 UniRef50_B7S1T1 Transcriptional regulator, AraC family n=1 Tax=m... 54 5e-06 UniRef50_Q48HQ8 Transcriptional regulator, AraC family n=3 Tax=P... 54 5e-06 UniRef50_A8SQM8 Putative uncharacterized protein n=3 Tax=Clostri... 54 5e-06 UniRef50_A0Z5W7 AraC-type DNA-binding domain-containing protein ... 54 6e-06 UniRef50_A7M2Q7 Sensor protein n=7 Tax=Bacteroides RepID=A7M2Q7_... 54 6e-06 UniRef50_B4X435 Transcriptional regulator, AraC family protein n... 54 6e-06 UniRef50_B3CHJ1 Sensor protein n=2 Tax=Bacteroides RepID=B3CHJ1_... 54 6e-06 UniRef50_B6EKX1 HTH-type transcriptional regulator, AraC family ... 54 6e-06 UniRef50_A9KKW7 Transcriptional regulator, AraC family n=1 Tax=C... 54 6e-06 UniRef50_D1PXP0 Sensor protein n=2 Tax=Prevotella RepID=D1PXP0_9... 54 6e-06 UniRef50_Q5WIZ4 Putative uncharacterized protein n=1 Tax=Bacillu... 54 7e-06 UniRef50_Q480T9 Transcriptional regulator, AraC family n=1 Tax=C... 54 7e-06 UniRef50_A6DLX0 Transcriptional regulator n=1 Tax=Lentisphaera a... 54 7e-06 UniRef50_A3UQ73 Helix-turn-helix, Fis-type protein n=3 Tax=Vibri... 53 8e-06 UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein ... 53 8e-06 UniRef50_A9KKI7 Two component transcriptional regulator, AraC fa... 53 8e-06 UniRef50_B8CYB7 Helix-turn-helix-domain containing protein AraC ... 53 8e-06 UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=A... 53 8e-06 UniRef50_C6J5Q8 Two component transcriptional regulator n=1 Tax=... 53 8e-06 UniRef50_UPI0001693CE5 response regulator receiver protein n=1 T... 53 9e-06 UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=P... 53 9e-06 UniRef50_UPI0001788EC5 two component transcriptional regulator, ... 53 9e-06 UniRef50_C7II19 Two component transcriptional regulator, AraC fa... 53 9e-06 UniRef50_C5BJX6 Transcriptional regulator, AraC family n=1 Tax=T... 53 9e-06 UniRef50_A7AG56 Sensor protein n=1 Tax=Parabacteroides merdae AT... 53 9e-06 UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=D... 53 1e-05 UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clost... 53 1e-05 UniRef50_UPI0001C35A14 two component transcriptional regulator, ... 53 1e-05 UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=... 53 1e-05 UniRef50_D1NBY5 Transcriptional regulator, AraC family n=1 Tax=V... 53 1e-05 UniRef50_A4CH99 Transcriptional regulator n=1 Tax=Robiginitalea ... 53 1e-05 UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. ora... 53 1e-05 UniRef50_C5RE27 Transcriptional regulator, AraC family n=1 Tax=C... 53 1e-05 UniRef50_Q1QBF2 Transcriptional regulator, AraC family n=1 Tax=P... 52 1e-05 UniRef50_C3HF38 Putative uncharacterized protein n=1 Tax=Bacillu... 52 1e-05 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 52 1e-05 UniRef50_A4A3Z8 Transcriptional regulator (AraC family protein) ... 52 1e-05 UniRef50_C0D1T3 Putative uncharacterized protein n=1 Tax=Clostri... 52 1e-05 UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=X... 52 1e-05 UniRef50_C3QVG6 Two-component system sensor histidine kinase/res... 52 1e-05 UniRef50_UPI0001C35655 two-component response regulator n=1 Tax=... 52 1e-05 UniRef50_C5RJF8 Transcriptional regulator, AraC family n=1 Tax=C... 52 1e-05 UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marin... 52 1e-05 UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Pae... 52 1e-05 UniRef50_C1P7P5 Transcriptional regulator, AraC family n=1 Tax=B... 52 1e-05 UniRef50_C6D226 Two component transcriptional regulator, AraC fa... 52 2e-05 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 52 2e-05 UniRef50_C7PMQ7 Transcriptional regulator, AraC family n=1 Tax=C... 52 2e-05 UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein ... 52 2e-05 UniRef50_C6CT15 Two component transcriptional regulator, AraC fa... 52 2e-05 UniRef50_A9G936 Transcriptional regulator, AraC family n=1 Tax=S... 52 2e-05 UniRef50_A9E8H7 Transcriptional regulator n=1 Tax=Kordia algicid... 52 2e-05 UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=m... 52 2e-05 UniRef50_A6GMI7 Putative transcriptional regulator, AraC family ... 52 2e-05 UniRef50_C0WDW3 Predicted protein n=2 Tax=Acidaminococcus sp. D2... 52 2e-05 UniRef50_A5VW33 Transcriptional regulator, AraC family n=36 Tax=... 52 2e-05 UniRef50_A4VH68 Transcriptional regulator, AraC family n=1 Tax=P... 52 2e-05 UniRef50_C6D094 Transcriptional regulator, AraC family n=1 Tax=P... 52 2e-05 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 52 2e-05 UniRef50_UPI0001C358FB two component transcriptional regulator, ... 52 2e-05 UniRef50_B1HXY4 DNA-binding response regulator n=2 Tax=Bacillace... 52 2e-05 UniRef50_UPI0001C362BB response regulator receiver protein n=1 T... 52 2e-05 UniRef50_A7K455 Signal transduction histidine kinase n=5 Tax=Vib... 52 2e-05 UniRef50_UPI0001C36481 AraC family transcriptional regulator n=1... 52 2e-05 UniRef50_A6KXP0 Two-component system response regulator n=6 Tax=... 52 2e-05 UniRef50_C2G180 AraC family transcriptional regulator n=2 Tax=Sp... 52 2e-05 UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepI... 52 2e-05 UniRef50_B5FC35 Transcriptional regulator, AraC family n=2 Tax=V... 52 2e-05 UniRef50_C8ZXM2 DNA binding response regulator n=4 Tax=Enterococ... 52 2e-05 UniRef50_A1A117 Transcriptional regulator, AraC family n=7 Tax=B... 52 2e-05 UniRef50_A0AHT2 Complete genome n=15 Tax=Listeria RepID=A0AHT2_L... 52 2e-05 UniRef50_B0A945 Putative uncharacterized protein n=1 Tax=Clostri... 52 2e-05 UniRef50_A7VU71 Putative uncharacterized protein n=1 Tax=Clostri... 52 2e-05 UniRef50_A5FBY5 Transcriptional regulator, AraC family n=1 Tax=F... 52 3e-05 UniRef50_A8VRA2 Methyl-accepting chemotaxis sensory transducer n... 52 3e-05 UniRef50_Q481H7 Transcriptional regulator, AraC family n=1 Tax=C... 52 3e-05 UniRef50_B9NP20 Transcriptional regulator, AraC family, putative... 52 3e-05 UniRef50_B2TEU0 Transcriptional regulator, AraC family n=3 Tax=B... 52 3e-05 UniRef50_D2YK24 Type 4 prepilin-like protein leader peptide-proc... 51 3e-05 UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecali... 51 3e-05 UniRef50_D2QDL2 Two component transcriptional regulator, AraC fa... 51 3e-05 UniRef50_B2U5Z6 Transcriptional regulator, AraC family protein n... 51 3e-05 UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein ... 51 3e-05 UniRef50_UPI0001973505 two-component response regulator n=1 Tax=... 51 3e-05 UniRef50_Q48G15 Transcriptional regulator ArgR n=24 Tax=Pseudomo... 51 3e-05 UniRef50_A0Z5W8 Transcriptional regulator, AraC family protein n... 51 3e-05 UniRef50_B5YAV6 Two-component response regulator n=2 Tax=Dictyog... 51 3e-05 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 51 3e-05 UniRef50_A3YC06 Transcriptional regulator, AraC family protein n... 51 3e-05 UniRef50_Q0SVI3 DNA-binding response regulator, AraC family n=9 ... 51 3e-05 UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotro... 51 3e-05 UniRef50_B3CG99 Sensor protein n=4 Tax=Bacteroides RepID=B3CG99_... 51 3e-05 UniRef50_D2QI98 Two component transcriptional regulator, AraC fa... 51 4e-05 UniRef50_B1ZXS3 Transcriptional regulator, AraC family n=1 Tax=O... 51 4e-05 UniRef50_UPI0001789620 two component transcriptional regulator, ... 51 4e-05 UniRef50_A7VWR5 Putative uncharacterized protein n=1 Tax=Clostri... 51 4e-05 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 51 4e-05 UniRef50_C4G3Y7 Putative uncharacterized protein n=1 Tax=Abiotro... 51 4e-05 UniRef50_A1U2D8 Transcriptional regulator, AraC family n=2 Tax=M... 51 4e-05 UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecali... 51 4e-05 UniRef50_A8EX63 Transcriptional regulator, AraC family n=1 Tax=A... 51 4e-05 UniRef50_B5XRX2 Transcriptional regulator, AraC family n=6 Tax=E... 51 5e-05 UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulat... 51 5e-05 UniRef50_A5TXQ0 Possible AraC family transcriptional regulator n... 51 5e-05 UniRef50_B7VRN2 Putative uncharacterized protein n=2 Tax=Vibrio ... 50 5e-05 UniRef50_D1W3I8 Sensor protein n=1 Tax=Prevotella buccalis ATCC ... 50 5e-05 UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=g... 50 5e-05 UniRef50_B9MP59 Two component transcriptional regulator, AraC fa... 50 5e-05 UniRef50_C4FYZ2 Putative uncharacterized protein n=1 Tax=Abiotro... 50 5e-05 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 526 bits (1354), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/253 (100%), Positives = 253/253 (100%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH Sbjct: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA Sbjct: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK Sbjct: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP Sbjct: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 Query: 241 LHYVSQHRERTVA 253 LHYVSQHRERTVA Sbjct: 241 LHYVSQHRERTVA 253 >UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Enterobacteriaceae RepID=ENVY_ECOLI Length = 253 Score = 282 bits (721), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 143/252 (56%), Positives = 192/252 (76%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 M++ S +PC+V+LTEK+V + VN +L N++A C NN+I++S+LN+ L+ HI+ Sbjct: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 +II DYL FLNK+L+ + W R ATP++ TP+VFR+AA HS E E TRA Sbjct: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 LLFTVLS FL+ +F++L+MY+LR+ V DSV +II+SDI WNL +VAS LCLSPSLLK Sbjct: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 KKLK+ENTSYSQI+T CRMRYAV L+MD KNI+QV+Q CGY+STSYFISVFK FYG+TP Sbjct: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 Query: 241 LHYVSQHRERTV 252 L+Y+++ R++ + Sbjct: 241 LNYLAKQRQKVM 252 >UniRef50_B5F2H2 Porin thermoregulatory protein EnvY n=1 Tax=Salmonella enterica subsp. enterica serovar Agona str. SL483 RepID=B5F2H2_SALA4 Length = 146 Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 95/134 (70%), Positives = 114/134 (85%) Query: 11 VLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFL 70 +LLTEKD W+RVNGKEPISLKAN+MA+L CENN+ID+SSLN+ LV +S + IKDYL+FL Sbjct: 1 MLLTEKDTWLRVNGKEPISLKANYMAILACENNVIDISSLNSVLVIQVSRNNIKDYLQFL 60 Query: 71 NKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFL 130 NKDLS +PVWQR+A P+LT CLTPD+FRVAA++S M E ERTRALLFTVLSRFL Sbjct: 61 NKDLSHLPVWQRNADPLLTANCLTPDIFRVAARYSAMETPDEIVSERTRALLFTVLSRFL 120 Query: 131 DSKKFVSLMMYMLR 144 D KKF+SL+M+MLR Sbjct: 121 DHKKFISLLMHMLR 134 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 132/237 (55%), Gaps = 4/237 (1%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN-NIIDVSSLNNTLVAHISHDIIKDY 66 P +++ + + + N I++ ++ ++ I L N VA I+ I Sbjct: 22 PGVIICSINETILTFNDGNKITIAPGNLIFVDPRQLTITHYGELEN--VALITQKTISLL 79 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 + LN D S I ++ +P + C +F+ AA S + +EK R R+L+ ++ Sbjct: 80 VSALNSD-SLIHSYKAHNSPFIIRKCPDIAIFKYAANLSHKSDLSCAEKLRKRSLMLALM 138 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE 186 S FLD + F+ L+M +L ++ V +I S+I DW+L+++AS L +SPSLLKKKL++E Sbjct: 139 SLFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLMSPSLLKKKLQAE 198 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 T+YSQ++T CRM+ A+ L D + + + CGY S SYFI+VF+ +G+TP Y Sbjct: 199 QTTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRKHFGITPTEY 255 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 129/223 (57%), Gaps = 15/223 (6%) Query: 23 NGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQR 82 NG + + A+ + + C N + VS D + +L L ++ ++ ++ Sbjct: 30 NGGDLVFADASQIQVDKCVENFVLVS-----------RDTLSLFLPMLKEEALKLHAHKK 78 Query: 83 SATPILTLPCLTPD--VFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMM 140 P L + T D VF+ AQ S +E R RAL+F +LS FL+ +F+ L++ Sbjct: 79 --VPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLRKRALIFALLSVFLEDTQFIPLLL 136 Query: 141 YMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMR 200 +L+ + V +I ++I +W L+ +AS L +SPSLLKKKL+ E TSYSQ++T CRM+ Sbjct: 137 NVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEGTSYSQLLTECRMQ 196 Query: 201 YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 A+ +++ G +I +V+ SCGY+S SYFI VF+++YGMTP Y Sbjct: 197 RALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEY 239 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 14/163 (8%) Query: 86 PILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRN 145 P L+L + ++A HS+ KER L ++L+ F KK S+ ++L N Sbjct: 86 PPLSLVFSLFEGIKIADSHSLWL------KER---LCISLLAMF---KKRESVNSFILTN 133 Query: 146 --CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAV 203 + + II +I + W+L +A + S SL+KK+L+ E TS+++I+ RMRYA Sbjct: 134 INTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAK 193 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 + + +I+ V+Q CGYNSTSYFI FKD+YG+TP HY + Sbjct: 194 KLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK 236 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 85/144 (59%), Gaps = 2/144 (1%) Query: 105 SMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWN 164 + + +E + + LLF+ LS F K F++L+ + + VS V I+ + W Sbjct: 94 AYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLS-VSGKVRNIVNMKLAHPWK 152 Query: 165 LSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNS 224 L + CL +S SLLKKKLK E T++SQI+ RM++A N + ++G +++++++ CGY S Sbjct: 153 LKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYAS 211 Query: 225 TSYFISVFKDFYGMTPLHYVSQHR 248 TSYFI F+ +G +P ++R Sbjct: 212 TSYFIYAFRKHFGNSPKRVSKEYR 235 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 13/241 (5%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLN--NTLVAHISHDIIKDY 66 C ++L +R+ GKE I K + L+ E N+ D+ S N + ++ + + D+ Sbjct: 5 CSIILVLNSFGVRI-GKEDILFKKGNAVLI--EYNLKDLFSSNTDHLMIVDVEEKTVNDF 61 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFR-VAAQHSMMPAETESEKERTRALLFTV 125 F N LS V +R L + C + + + A + + + + V Sbjct: 62 --FKNYTLSPFSV-RRFYPSYLIVECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLAV 118 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 LS S+K V ++ N + V II SDI W L ++S L +S SLLK+KLK Sbjct: 119 LS----SEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKD 174 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 E S+S++I RM A L+ + +V+ CGY++ SYF+SVF+ ++G+ P Y+S Sbjct: 175 EGLSFSKLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQYLS 234 Query: 246 Q 246 + Sbjct: 235 R 235 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 1/123 (0%) Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 L F+ LS F + V L+ + N +S V +II D + W L VA L S SL+K Sbjct: 112 LYFSCLSLFSMHDELVPLLFNSI-NTLSGKVERIISVDTSRRWYLRDVAEKLYTSESLIK 170 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 KKL+ ENTS+S+I+ RM A L ++ ++ +++ CGY+STSYFI+ F+ +YG+TP Sbjct: 171 KKLQDENTSFSKILLASRMARAKTLLELNQMPLTVIAEKCGYSSTSYFINTFRQYYGVTP 230 Query: 241 LHY 243 Y Sbjct: 231 HQY 233 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 6/166 (3%) Query: 93 LTPDVFRVAAQHSMMPAETESEK---ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSD 149 L P VA +++ + +S+K ++ L+ +LS F+ + +L + +N +++ Sbjct: 125 LAPIETGVARVFNLLHSSNKSQKLSQDKKEYLIRFLLSEFIYEPEAFALFRELSQNTLAE 184 Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMD 209 ++Y II SDI + W L ++ L +S S LK+KLK E+TS+S++ RM A L Sbjct: 185 NIYNIIISDISRKWALKDISDSLYMSCSTLKRKLKQEHTSFSEVYLNARMNKATKLLRNS 244 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTP---LHYVSQHRERTV 252 NI++V+ CGY+S SYF VFK + TP L ++S R + V Sbjct: 245 EYNITRVAYMCGYDSASYFTCVFKKHFKTTPSEFLAFLSSSRHQYV 290 >UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escherichia coli RepID=PERA_ECO27 Length = 274 Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 72/119 (60%) Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 +LS F D V++++ + D V ++IE DI K+W L V+S + +S S L+K+L Sbjct: 144 LLSFFNDYNDIVNVILSASSKSIVDRVIKVIELDISKNWKLGDVSSSMFMSDSCLRKQLN 203 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 EN ++ +I+ +M++A L KNI ++S G+NSTSYFI VFK++Y TP Y Sbjct: 204 KENLTFKKIMLDIKMKHASLFLRTTDKNIDEISCLVGFNSTSYFIKVFKEYYNTTPKKY 262 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 2/133 (1%) Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 L + LS F K+ + L+ + + VS V ++I DI K W L +A + S SL+K Sbjct: 112 LYLSCLSMFSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK 170 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 KKL+ ENT +S+I+ RM A L + + +++ CGY+STSYFI+ F+ +YG+TP Sbjct: 171 KKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 Query: 241 LHYVSQHRERTVA 253 H +QH T + Sbjct: 231 -HQFAQHSPGTFS 242 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 86.3 bits (212), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 17/227 (7%) Query: 25 KEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNK----DLSQIPVW 80 K+ +SLK + L + + + I+H I+ YL +K L+ +P++ Sbjct: 20 KDTLSLKPGSVVLATKCIRALFLMHYGKVKIFDINHSIVSQYLEIQHKLTRTHLTDVPLY 79 Query: 81 QRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMM 140 L+L P A +++ ++ S L+ LS F +S + + L + Sbjct: 80 -------LSLEPNNP-----ALAEALITSQRFSGDTTDMFLMMACLSLF-ESDERILLFL 126 Query: 141 YMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMR 200 + +S V II++DI W L +A L +S SLLK KLK+E +S+++ RMR Sbjct: 127 SGCLSSISAKVRAIIQTDISASWTLGAIALRLHMSESLLKIKLKNEGHMFSRLLLEERMR 186 Query: 201 YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 AVN L V++ CGY+S SYFISVF +YG P YVS+ Sbjct: 187 VAVNMLCSRHGYGQAVAEKCGYSSWSYFISVFHRYYGFPPDRYVSRQ 233 >UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonella enterica RepID=SIRC_SALTI Length = 295 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 71/123 (57%) Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 L ++S F+ + ++ + VY II SD+ + W+ + VA L +S S LK+ Sbjct: 168 LMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLFMSVSSLKR 227 Query: 182 KLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 KL +E S+S+I RM A+ L M NISQV+ CGY++ SYFI++FK + +TPL Sbjct: 228 KLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPL 287 Query: 242 HYV 244 ++ Sbjct: 288 SFM 290 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 116/247 (46%), Gaps = 17/247 (6%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRF 69 I++L DV+ GKE + L+ L++ + ++ +VA + I YL+ Sbjct: 11 ILILESFDVYF---GKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISRYLKA 67 Query: 70 LN-KDLS---QIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTV 125 N +D+S + P + + +L A H E E ++ FT Sbjct: 68 NNLRDISDCREYPSYLKINFADFSLI----KGLISWANHCAEYIEIFDE-----SIAFTC 118 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 LS F K+F + L++ V II +D+ W L ++S L LS SLLK+KLK Sbjct: 119 LSAFSSEKQFGVFLFECLKS-TEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKE 177 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 E S+S+II RM+ A L IS+V++ CGY S SYF VF+ ++G++P Y Sbjct: 178 EGVSFSKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQ 237 Query: 246 QHRERTV 252 + E + Sbjct: 238 RSSESKI 244 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 117/235 (49%), Gaps = 14/235 (5%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C V+L + + GK+ + + N + L + + + N I I++ Y+ Sbjct: 4 CYVILVNRPFETEIAGKK-LFFQKNDVLLTDNISQSFFLRHPGNVTELRIDECIVRKYME 62 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMM---PAETESEKERTRALLFTV 125 ++ Q S + + ++P + +A H++M + ++ + + F Sbjct: 63 SADR-------IQHSDSAV-SVPFIKTTFSHIALLHNVMQNLSLQKTLPQQFSEQMFFAC 114 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 LS F + F+ L+ + N V+ V II S + W + +++ L +S SLLK+KL+ Sbjct: 115 LSIFSTHRGFMFLLFRCI-NSVALKVRYIICSSPSRAWRVKDISNSLYMSESLLKRKLQE 173 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 E S+SQI+ RM A +L+ +++Q++ CGY ST YFISVF++++G+TP Sbjct: 174 EKVSFSQILLDIRMHNA-RQLISSKLSVNQIAIRCGYASTPYFISVFREYFGITP 227 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 2/127 (1%) Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 A+ F++LS F D + + + S V I SD+ K W L +A L +S SL+ Sbjct: 116 AIFFSLLSVFSDVANLRAFLTSGMPT-FSGKVRSIFLSDVSKHWKLRDLADYLYMSESLI 174 Query: 180 KKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 KKKL ENTS+S+I+ RM A+ +L+ I VS+ CG++STSYF+ +F+ +Y T Sbjct: 175 KKKLLLENTSFSKILLDTRMSLAI-KLLKQNHPIKYVSEMCGFSSTSYFVCLFRQYYECT 233 Query: 240 PLHYVSQ 246 P Y+ Sbjct: 234 PRKYLKH 240 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 81/144 (56%), Gaps = 3/144 (2%) Query: 98 FRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIES 157 F ++ + + E E T ALL +LS F+ F ++ + V VY ++ + Sbjct: 148 FTLSQEKKGIFENEEKENIATYALLL-LLSGFIHDTAFAGIISRSAKLSVKYKVYNLLYT 206 Query: 158 DIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGK-NISQV 216 + K W L V+S + +S S LK+KL +E T++S++ T RM A ++L+ GK +++ V Sbjct: 207 EPDKQWKLDDVSSAIFMSASTLKRKLATEGTTFSELYITARMNLA-SKLLRTGKYSVTNV 265 Query: 217 SQSCGYNSTSYFISVFKDFYGMTP 240 + CGY+S SYFI+ FK + +TP Sbjct: 266 AVLCGYDSVSYFIACFKRQFNITP 289 >UniRef50_Q04819 ORF11 n=5 Tax=Salmonella enterica subsp. enterica RepID=Q04819_SALTY Length = 259 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 8/146 (5%) Query: 88 LTLPCLTPDVFR-----VAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYM 142 L PC VFR + A ET E L F ++S F + F + Sbjct: 82 LVQPCPEDSVFRPLMVRLCAGTDNSYGETGPENP---FLTFALVSAFCEQDIFFPFLKTC 138 Query: 143 LRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYA 202 L+ ++D V +I ++ ++W + VA L +S SLLKKKLK ENTSY++I+ CRM+ A Sbjct: 139 LKQSMADQVATVINRNVSENWTIHRVAGELYVSVSLLKKKLKEENTSYTRILLECRMKKA 198 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYF 228 ++M + +V+ CGY+S F Sbjct: 199 SELIVMQEGAVKKVAYQCGYSSVPVF 224 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/98 (39%), Positives = 57/98 (58%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 + + VY II S + W L+ VA + +S S LK+KL E TS+S I + RM A L Sbjct: 207 LKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKLL 266 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + N++ V+ CGY+STSYFI FK ++ TP ++ Sbjct: 267 RIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFI 304 >UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11 Tax=Salmonella enterica subsp. enterica RepID=B5R1L9_SALEP Length = 271 Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 65/106 (61%) Query: 148 SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELM 207 SD V + I++DI W L ++ L LS ++KKL++ENT++ +I+ RM+ A ++ Sbjct: 157 SDIVRKTIDNDISTKWRLKTLSEKLNLSEVTIRKKLENENTNFYRILLDARMQKAARLVL 216 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA 253 +I++VS + G +S SYFI +F D+YG+TP + +++ R Sbjct: 217 DSDTHINKVSYAVGMSSVSYFIKLFSDYYGLTPKQFHLKYKHRNTG 262 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 68/131 (51%) Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 ++L F +++ + + ++L + + ++ +I + K W+L VA L +PS Sbjct: 141 QSLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDDVAKALFTTPST 200 Query: 179 LKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 L++ L E S+ Q++ RM A+N L ++ Q+S CG+ S +YF VFK Y M Sbjct: 201 LRRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAYFCDVFKRKYNM 260 Query: 239 TPLHYVSQHRE 249 TP + Q R+ Sbjct: 261 TPSQFRLQSRQ 271 >UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory protein n=3 Tax=Escherichia coli RepID=Q8GA53_ECOLX Length = 290 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 59/92 (64%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMM 208 + V ++IES+I K W L +++ +S ++KKL++E + ++I RM+ A+ L+ Sbjct: 190 NRVIELIESNIAKKWTLRLLSEEFSISEIAIRKKLEAEGVIFRELILEIRMKKAMTLLIA 249 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 ++S+++ GYN+ SYFIS F+ F+GMTP Sbjct: 250 GELSVSKIADKVGYNNISYFISHFRQFFGMTP 281 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 2/109 (1%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 + D + Q+IESD DW L+ A +S + L+++L +ENT +S+I++ RM A+ + Sbjct: 164 LEDRLRQMIESDPAFDWTLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRALGLI 223 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY--VSQHRERTVA 253 ++QV+ GY+S S F + FK+ +G++P H S+H ER A Sbjct: 224 HTTTLPMAQVALEVGYDSPSQFSARFKERFGVSPRHVRSGSEHFERIGA 272 >UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=Escherichia coli E24377A RepID=A7ZGX7_ECO24 Length = 209 Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%) Query: 148 SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELM 207 +D V +IE D+ + W L+++A +S ++K+L+SE+T+++QI+ RM A L+ Sbjct: 107 TDKVRGVIEKDLSRKWTLAIIADVFNVSEITIRKRLESEDTNFNQILMQSRMSKAALLLL 166 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + ISQ+S G +S SYFI +F +G+TP + Sbjct: 167 ENSYQISQISNMIGISSASYFIRIFNKHFGVTPKQF 202 >UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Escherichia coli RepID=Q8GA34_ECOLX Length = 271 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 60/93 (64%) Query: 148 SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELM 207 ++ + IE++ K W L+M+A +S ++K+L+SE TS+S + RM ++ L+ Sbjct: 170 TEKIRNQIENNPSKRWCLNMIADEFNISEISVRKRLESEGTSFSNLFLKVRMEKSMQLLL 229 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 + I Q+S+S G+ STSYFI +FKD++G+TP Sbjct: 230 QNELQICQISKSVGFRSTSYFIKIFKDYFGITP 262 >UniRef50_P0A2T2 Virulence regulon transcriptional activator virF n=9 Tax=Enterobacteriaceae RepID=VIRF_SHIDY Length = 262 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 62/102 (60%) Query: 148 SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELM 207 SD + +I+E +I K W LS +++ L LS ++K+L+SE ++ QI+ RM +A L+ Sbjct: 160 SDQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKLLL 219 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 I+ VS+ G +S SYFI F ++YG+TP + H++ Sbjct: 220 NSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKFYLYHKK 261 >UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 Tax=Enterobacteriaceae RepID=A6T768_KLEP7 Length = 262 Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 56/96 (58%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 +S V Q+I + W++S VA L L S L+++L+ E+ S+ QI+ RM +A+ +L Sbjct: 165 LSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEVRMAHALGQL 224 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 + I +++Q+ GY S S F + F+ YG+ P H Sbjct: 225 QTTSRPIGEIAQNSGYQSGSRFTARFRQHYGLLPKH 260 >UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PNS5_VIBCH Length = 267 Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 75/121 (61%), Gaps = 13/121 (10%) Query: 135 FVSLMMYMLRNC----------VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 VSL++ + ++C +S V + I ++ W+LSM+A L +S S LK+KLK Sbjct: 143 LVSLLIEVFKSCKKTQQSPIGVISRKVLEKIIECPYERWSLSMMAKELYMSESTLKRKLK 202 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNI--SQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 SE+ +++++ RM +A +L++ ++I + V++ CG+N SYF+S FK ++G++PL Sbjct: 203 SEDQTFTELYNFARMSHA-KKLLLSNRDIKIATVAEMCGFNHVSYFVSCFKKYFGLSPLV 261 Query: 243 Y 243 Y Sbjct: 262 Y 262 >UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 Tax=Enterobacteriaceae RepID=D2TIS0_CITRO Length = 276 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 57/90 (63%) Query: 154 IIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNI 213 IIE+D+ + W L +A+ L +S ++KKL+ E+ +++ ++ RM +A + K+I Sbjct: 179 IIEADLSRSWRLVDLANILHMSEVSIRKKLEKESNNFNALVLDIRMYHAAKLITTSDKHI 238 Query: 214 SQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + ++ GY STSYFI FK+F+G+TP + Sbjct: 239 NSIANEVGYTSTSYFIRNFKEFFGITPKQF 268 >UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vibrio RepID=D0MC89_VIBSE Length = 269 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 65/104 (62%), Gaps = 2/104 (1%) Query: 145 NCVSDSVYQI--IESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYA 202 + +SDS I IE++I KD L +A+ + +S + LK++L +E+ S+SQI+ R+ +A Sbjct: 160 SSLSDSQKAIKYIENNIEKDITLEGLAAHMSMSIATLKRRLAAEDLSFSQILKVKRINFA 219 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 +L M K+I++++ G+ S ++F + FK Y MTP + +Q Sbjct: 220 ATQLRMSEKSITEIAFESGFKSAAHFSTAFKSVYNMTPKDFRNQ 263 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 5/161 (3%) Query: 94 TPDVFRVAAQ--HSMMPAETESEKERT---RALLFTVLSRFLDSKKFVSLMMYMLRNCVS 148 TPDV Q +PA ++ E+T ++L F +L+ ++ + Sbjct: 140 TPDVVEQNFQLFQQSLPAVADTRLEKTFLTQSLFFILLALNEAGIDVFNVYRFNYDEPKE 199 Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMM 208 ++ ++I D + W++ +A L + S L++ L E S+SQ++ RM A+N L Sbjct: 200 RTIARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTF 259 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 +ISQ+ G+ S +YF FK YG+TP + + RE Sbjct: 260 SNYSISQIGHRSGFGSAAYFCDAFKRKYGITPSQFRATSRE 300 >UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax=Escherichia RepID=CSVR_ECOLX Length = 301 Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 57/92 (61%) Query: 148 SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELM 207 +D V +IE D+ + W L+++A +S ++K+L+SE+T+++QI+ RM A L+ Sbjct: 165 TDKVRGVIEKDLSRKWTLAIIADVFNVSEITIRKRLESEDTNFNQILMQSRMSKAALLLL 224 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 + ISQ+S G +S SYFI +F +G+T Sbjct: 225 ENSYQISQISNMIGISSASYFIRIFNKHFGVT 256 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 118/256 (46%), Gaps = 15/256 (5%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI-IDVSSLNNT-----LVAHIS 59 D IV L+ + +NG I LK N ++ ++I ++ LNN + I Sbjct: 20 DHHLIVKLSNVQGDVHING-HAIELKNNSTFVVPKFSHISCSINQLNNQENIELQLLMID 78 Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVF--RVAAQHSMMPAETESEKER 117 + I + ++++ L Q S +P+ T+P TP + + ++P+ S E+ Sbjct: 79 EESITEAFKYISA-LKQPTFPTASCSPVYTIP--TPAIVDQNFVLFNKLLPSICGSSMEK 135 Query: 118 T---RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCL 174 T + L+F +++ ++ + ++ ++I D + W++ +A L Sbjct: 136 TLLSQCLVFILMALNEAGIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALFT 195 Query: 175 SPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 + S L++ L E S+SQ++ RM A+N L +ISQ+S G+ S +YF FK Sbjct: 196 TQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSISQISNRSGFGSAAYFCDAFKR 255 Query: 235 FYGMTPLHYVSQHRER 250 YG+TP + + R+ Sbjct: 256 KYGITPSQFRTTSRQE 271 >UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio parahaemolyticus RepID=A6B6J4_VIBPA Length = 241 Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 51/93 (54%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDG 210 +Y+++ D+ K W+L V S S L +KLK TS QII+ R+ YA + Sbjct: 135 IYRLVSKDLKKKWSLEEVCKLTYTSKSTLNRKLKDNQTSMGQIISNARLDYATILITNTS 194 Query: 211 KNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 ++ ++S G+NSTSYF FK+ +G +P Y Sbjct: 195 LSVDEISMLSGFNSTSYFCKKFKESHGFSPKQY 227 >UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=Proteobacteria RepID=Q21KL2_SACD2 Length = 270 Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 56/94 (59%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 +S V+ II +D+ DW + ++ L +S S +++KL +E TS + + R+ + ++++ Sbjct: 167 LSAKVHAIISTDLTYDWTMDVITQKLAMSESTIRRKLTAEGTSLQAVKDSARLSFGLHQV 226 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 + I+ +++ CGY S S F + FK +G+TP Sbjct: 227 QSTFQPINHIAEQCGYLSQSRFTNKFKQLFGVTP 260 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 95/181 (52%), Gaps = 16/181 (8%) Query: 82 RSATPILTLPCLTPDVF-RVAAQHS-------MMPAETESEKERTRA---LLFTVLSRFL 130 R+ P+ +P D F + + QH M+ E E K+ ++A L +++ + Sbjct: 93 RNVYPLSKIPAQQTDTFFKFSGQHKRIDQLKDMLIEEVE-RKQNSQAQEHLALALMALMV 151 Query: 131 DSK-KFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTS 189 + + + +++++ + + + Q IES+I ++ +L +A + +S + LK++L +E S Sbjct: 152 EKQPELLNMIIRATQFSETQKIIQFIESNIEEEISLETLAKHMGMSTATLKRRLAAEEMS 211 Query: 190 YSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY---VSQ 246 +SQ++ R+ +A +L + K+I+ ++ G+ S ++F + FK MTP + V Q Sbjct: 212 FSQLLKIKRISHAATQLRVTDKSITTIAYESGFKSAAHFSTAFKAVQQMTPKEFRAKVQQ 271 Query: 247 H 247 H Sbjct: 272 H 272 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 56/105 (53%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 +S + +I D+ K W L +A + +S S +K+KL E T+++ ++ R+ A + Sbjct: 133 LSSRIRALISKDLTKPWTLKEIAKLVYMSESTVKRKLNKEGTTFTDVLQAARLDTAQKMV 192 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERT 251 ++S +++ CG+ SYF + F+ YG TPL Y Q + R Sbjct: 193 CNSDASVSAIAELCGFKHASYFGACFRKEYGATPLAYRKQAQLRA 237 >UniRef50_Q169B6 Transcriptional regulator, AraC family, putative n=2 Tax=Roseobacter RepID=Q169B6_ROSDO Length = 337 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKL 183 +L LD K + + + ++ V +IE+ + H+ +S +A L LS L ++L Sbjct: 213 LLGLLLDQAKAIEAKVSHAQASTAEKVEVLIEAGLAHEVPKISDIAHALGLSQRTLARRL 272 Query: 184 KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 TSYS I+ R+R A EL I ++S GY ST+ F + FK G++P Y Sbjct: 273 NEAETSYSGILNHVRLRVAARELRESKNQIGEISWRLGYGSTASFSTAFKRETGLSPREY 332 >UniRef50_P23774 987P fimbrial operon positive regulatory protein fapR n=1 Tax=Escherichia coli RepID=FAPR_ECOLX Length = 260 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 55/96 (57%) Query: 148 SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELM 207 S+ + ++ SD+ + W LS +A + +S ++K+L+ E +++Q+I RM A ++ Sbjct: 153 SERIVTLLFSDLTRKWKLSDIAEEMHISEISVRKRLEQECLNFNQLILDVRMNQAAKFII 212 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 I ++ GY S SYFI FK++YG+TP + Sbjct: 213 RSDHQIGMIASLVGYTSVSYFIKTFKEYYGVTPKKF 248 >UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTA1_CHRVO Length = 266 Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 53/96 (55%) Query: 145 NCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVN 204 + ++ + Q++ D W++ A L L S L+++L E+ + I+ RM A+ Sbjct: 164 DSLTQGLRQLMMLDPAAPWSVETAARRLNLGASTLRRRLAEEDAGFQAILEEVRMGLALQ 223 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 ++ ++I+Q++++ GY S S F + F+ YG+TP Sbjct: 224 QVQDGRRSIAQIAEASGYASASRFAARFRQRYGLTP 259 >UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein n=3 Tax=Aliivibrio RepID=B5ETV0_VIBFM Length = 266 Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 55/98 (56%) Query: 146 CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNE 205 S + + +E I D + MVA L +S S LK+KL+S+ S++ ++ R+ YA + Sbjct: 163 TTSQQLIRYVEEHISADLTIDMVAPKLGMSASTLKRKLQSDKLSFAHLVKVKRINYAATQ 222 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 L + K I++++ G+ + ++F + FK G+TP + Sbjct: 223 LRLTRKTITEIAYDTGFKTAAHFSTSFKSVKGITPKEF 260 >UniRef50_B7ALJ8 Sensor protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7ALJ8_9BACE Length = 1239 Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%) Query: 169 ASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 AS L LS SLL KK+K+ N S + I + R+ YA+ +L N+++VS+ CG+++ +Y Sbjct: 1163 ASALALSQSLLYKKIKALTNLSVVEFIRSIRLNYAMEKLRSGEYNVTEVSEMCGFSTPAY 1222 Query: 228 FISVFKDFYGMTP 240 F VFK+++G TP Sbjct: 1223 FSKVFKEYFGKTP 1235 >UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZS6_GEOSF Length = 324 Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 4/108 (3%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAV 203 R C+SDSV I++ D++ W L VA L +S +++KL+ E ++ +++ R+R A Sbjct: 216 RECLSDSVEAIVKQDLNHKWTLKSVAQSLNMSERSMQRKLQDEGQTFRKLLNNARIRTAE 275 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERT 251 + L+ +++++ G++ S+F FK + G P SQ+R+ T Sbjct: 276 SYLLNSQLSLTEIGYLTGFSDYSHFSKEFKRYSGTNP----SQYRKGT 319 >UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_BACV8 Length = 1340 Score = 63.5 bits (153), Expect = 7e-09, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 4/109 (3%) Query: 143 LRNCVSDSVYQIIESDIHKD-WNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMR 200 L N + QIIE ++ + +++ +A +C+S S L +K+K + S ++ I +MR Sbjct: 1233 LDNEFLQKITQIIEENLEMEKMDIAFIADKMCMSHSTLYRKIKGLTDMSANEFIRKVKMR 1292 Query: 201 YAVNELMMDGK-NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 V EL+M G+ IS+++ G++S +YF FKD YGM+P YV Q + Sbjct: 1293 KGV-ELLMSGQYTISEIAYMIGFSSVAYFRQCFKDEYGMSPSDYVKQKQ 1340 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 63.2 bits (152), Expect = 7e-09, Method: Composition-based stats. Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 1/103 (0%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNE 205 ++D + + S + + N+ +A L LS S L +K+KS + S +++I T R++YA Sbjct: 832 ITDFTHYVENSIANPEMNIDEIADALGLSRSNLYRKIKSLTDYSPNELIRTIRVKYAKQL 891 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 L K+IS+V+ G++S SYF FKDFY +P Y+ + R Sbjct: 892 LNSKAKSISEVAYEVGFSSPSYFAKCFKDFYNESPTEYLERIR 934 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 61/121 (50%) Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 AL L+ L ++ + SL+ V +++ + KDW+L ++ L +S S L Sbjct: 139 ALRRKELAHLLYARGYGSLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSESTL 198 Query: 180 KKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 +++L+SEN + ++ + R+ ++ I+ ++ CGY S S F FK +GMT Sbjct: 199 RRRLQSENAGFRDLLESVRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERFKQRFGMT 258 Query: 240 P 240 P Sbjct: 259 P 259 >UniRef50_B2Q5D0 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q5D0_PROST Length = 351 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 3/134 (2%) Query: 113 SEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 ++KE +F L L+ K S M + V D +YQ I S KD +LS VA+ L Sbjct: 215 NKKEHDETFIF-FLKNHLNKLKHSSCMPESMSMKVQDIMYQHILS--QKDISLSWVAAKL 271 Query: 173 CLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVF 232 +SP L++KL EN +YS I+ R ++++L+ + I +++ GY ++ F F Sbjct: 272 YISPRTLQRKLAKENINYSDILDKIRCDISIDKLVEEKIRIDSLAELLGYTDSAAFSKAF 331 Query: 233 KDFYGMTPLHYVSQ 246 K + G PL Y+ + Sbjct: 332 KRWTGSPPLQYIKK 345 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%) Query: 168 VASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 +A L +SP L+++LK+ENTSY +++ RM+ A L + ++V +CG++ S Sbjct: 254 IAQALHMSPRTLQRRLKAENTSYGEVVQQTRMQLAQQLLASPDISATEVGLACGFSDASA 313 Query: 228 FISVFKDFYGMTPLHYVS 245 F FK + G TP Y S Sbjct: 314 FTRAFKRWTGTTPSDYRS 331 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 62.4 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 2/98 (2%) Query: 153 QIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDG 210 Q +E+ I + + N+ +A L LS S L +K+KS + S +++I T R++YA L Sbjct: 806 QYVENSIANPELNIDEIADALGLSRSNLYRKIKSLTDYSPNELIRTIRVKYAKQLLNSKA 865 Query: 211 KNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 K+IS+V+ G++S SYF FKDFY +P Y+ + R Sbjct: 866 KSISEVAYEVGFSSPSYFAKCFKDFYNESPTEYLERIR 903 >UniRef50_D2QQS8 Histidine kinase n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQS8_9SPHI Length = 1343 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 63/103 (61%), Gaps = 3/103 (2%) Query: 149 DSVYQIIESDIHKD-WNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNEL 206 + VY ++ES + + + +A+ + +S L +K+K+ S +++I R++ A EL Sbjct: 1238 NRVYALLESHLDDSTFGVEPLAAAIGMSRMHLNRKIKAMTGLSPNELIRAVRLKRAA-EL 1296 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 +M G ++S+V+ G+++ +YF VFK+ Y +TP YV QHR+ Sbjct: 1297 LMTGASVSEVADRVGFDTPAYFSKVFKEHYQLTPSEYVEQHRQ 1339 >UniRef50_A6KYM2 Sensor protein n=17 Tax=Bacteroides RepID=A6KYM2_BACV8 Length = 1346 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 12/170 (7%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLM 139 +Q A LT P F HS + ES K A F S +D + V+ Sbjct: 1182 YQVGADSYLTKP------FSATLLHSRIHNLLESRK--LLAERFNTNSILIDKRAAVTES 1233 Query: 140 MYMLRNCVSDSVYQIIESDIHKD-WNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTC 197 M L N + + ++IE + + ++ ++ +C+S S L +K+K+ S ++ I Sbjct: 1234 MNKLDNEFLEKINKLIEDRLSSEKIDIGYLSDAMCMSNSTLYRKMKALTGLSTNEYIRKI 1293 Query: 198 RMRYAVNELMMDGK-NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 +M+YA L+++GK NIS+V+ G NST YF FKD +GM P Y+ + Sbjct: 1294 KMQYA-ERLLLEGKYNISEVAFKVGINSTVYFRQCFKDEFGMAPSDYLKK 1342 >UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein n=1 Tax=Vibrio vulnificus YJ016 RepID=Q7MJE3_VIBVY Length = 243 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 54/100 (54%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAV 203 R + ++ +II SDI K WN + S L +S S L + LK+E + I+ R+ + Sbjct: 136 RKEYNKNIVEIINSDIKKKWNYKEICSLLFVSHSTLYRTLKNEGKTLKMIVLHIRIINSQ 195 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 L+ +I+++S CG+NS SYF FKD M+P Y Sbjct: 196 KLLVNTNMSINEISNRCGFNSPSYFSRKFKDSVKMSPTEY 235 >UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein n=3 Tax=Yersinia RepID=C4T4E3_YERIN Length = 269 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 A + +L+ +L + V L+ R+ ++ V Q++ D ++W++S VA L + S L Sbjct: 141 AAMGVLLALYLAGQAGVLLIDR--RDKWAEQVQQVLLLDPARNWSVSDVARSLHIGDSTL 198 Query: 180 KKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 ++KL E+ S+ I+ RM A++ L +I +++ GY S S F S F+ +G+T Sbjct: 199 RRKLMQEDRSFRMILEEVRMGCALHALQTTSLSIGEIAAQHGYISPSRFTSRFQQHFGLT 258 Query: 240 P 240 P Sbjct: 259 P 259 >UniRef50_Q5DYJ4 Transcriptional regulator, AraC family n=1 Tax=Vibrio fischeri ES114 RepID=Q5DYJ4_VIBF1 Length = 269 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 53/97 (54%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAV 203 + V + ++++ W L V+ L +PS L++ LK EN S+S+++ R+ + Sbjct: 158 KRSVKSLISELVKKSPEHSWTLITVSKELNTTPSTLRRHLKKENISFSKLLLKIRLGLGL 217 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 N L +I +VS G+NS++YF VFK Y MTP Sbjct: 218 NYLTFSNHSILKVSYLSGFNSSAYFCDVFKKEYHMTP 254 >UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecalis RepID=C2H3H7_ENTFA Length = 493 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 4/105 (3%) Query: 148 SDSVYQI---IESDIHKDWNLSMVASCLCLSPSLLKKKLKSENT-SYSQIITTCRMRYAV 203 S+SV Q IE ++ NL VA L L+PS L + K E S+SQ + R ++A Sbjct: 381 SESVSQAVERIEQGYLEELNLKTVADELHLNPSYLGQIFKKETKRSFSQYLNQVRTKHAQ 440 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 L+ I+++S+ G+N+T+YF +FK G+TP + Q++ Sbjct: 441 KLLLYTDDTINEISEKVGFNNTNYFSKMFKKLNGITPKEFREQYQ 485 >UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Shewanella RepID=A6WTM9_SHEB8 Length = 252 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 57/114 (50%) Query: 130 LDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTS 189 L K+ VS + + V+ + ++ W +A L +S + L++KL E+TS Sbjct: 135 LPDKRSVSWLYGHTQRSVTQAALALMSVSPAAPWQQEEIADKLHMSTASLRRKLALEDTS 194 Query: 190 YSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + Q++ R+ + + L G+ + QV+ +CGY S F FK +G+TP Y Sbjct: 195 FRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQFGLTPAAY 248 >UniRef50_C3K2A2 Putative putative AraC-family regulatory protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K2A2_PSEFS Length = 384 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 53/83 (63%), Gaps = 1/83 (1%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 +LS ++ L +SP LK++LK E T++ +++ R R A+N L+ DG N++++++ G++ Sbjct: 296 DLSSISELLHVSPRTLKRRLKEEGTTFRKLLADVRSRNAIN-LLKDGHNLTEIAERLGFS 354 Query: 224 STSYFISVFKDFYGMTPLHYVSQ 246 S F FK ++G++P + Q Sbjct: 355 DLSSFSQAFKRWHGISPSQFSQQ 377 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 8/133 (6%) Query: 113 SEKERTRALLFTVLSRFLDSKKFVSLMMY-MLRNCVSDSVYQIIESDIHKDWNLSMVASC 171 +KER R V+ + +D K +L + R + +++ Q I+ + D +L VA Sbjct: 126 EQKERER-----VMKQLIDDKLINALDRHPQTREPIREAI-QFIDQRLKDDISLKDVAEH 179 Query: 172 LCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFIS 230 + L+PS K + ++S+ +T RM+ A LM ++++++ CGY + YFI Sbjct: 180 VHLNPSYFSTLFKEQMQLTFSEYLTRRRMQRAKELLMTTDMTVAEIAEECGYRTAKYFIH 239 Query: 231 VFKDFYGMTPLHY 243 +FK+ G TP Y Sbjct: 240 LFKEMEGKTPSSY 252 >UniRef50_Q1N1T2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N1T2_9GAMM Length = 361 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 133 KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQ 192 K+F LM Y + V Q+I S L +A+ L LSP L++ LK+ SY Sbjct: 239 KRF--LMKYESDELIIKQVKQVIRSMSFNQITLERLANKLHLSPRSLRRHLKNVGVSYKA 296 Query: 193 IITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + T R R A+ ++ + + ++++ GY +TS F FK ++G++P Y H+ Sbjct: 297 LFETERKRQAIKQVQLGNIALDKLAEELGYQNTSSFSRAFKRWFGLSPQQYKDNHQ 352 >UniRef50_B6XD52 Putative uncharacterized protein n=2 Tax=Providencia RepID=B6XD52_9ENTR Length = 282 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 12/168 (7%) Query: 75 SQIPVWQRSATPILTLPCLTPDVFRVAAQ---HSMMPAETESEKERTRAL--LFTVLSRF 129 SQ+ S TPIL +VF A Q H M +T+ + + L VLS F Sbjct: 110 SQVCTTDISNTPILG------EVFYSAIQEIRHLEMNTDTKIKNVDNKMAIHLNFVLSFF 163 Query: 130 LDSKKFVSLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKSENT 188 L F + + D VY I + K + L ++A L +S S LK++L SE+T Sbjct: 164 LLENTFYPTLQTSMNVLTKDKVYDYIYHNSGKQNCTLELIAKQLHMSTSTLKRRLASEDT 223 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 ++S I T RM A+ +D + +++Q GY+ +FI FK+FY Sbjct: 224 NFSTISLTSRMNKAMMLSKVDNMPMPRIAQEVGYDDIPHFIQAFKNFY 271 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 52/94 (55%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 +S + Q+I D+ W ++ VA L +S + L+++L +E S+ +++ +M A+ L Sbjct: 164 LSKQIRQLIAQDMAASWQIADVAQRLGMSEATLRRRLANEGASFRELLGNIKMMRALTLL 223 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 ++QV+ + GY S + F + F+ +G TP Sbjct: 224 QTSPLGVAQVAYAVGYESPARFAAKFRAHFGCTP 257 >UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=Enterobacteriaceae RepID=A4TK67_YERPP Length = 291 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 54/108 (50%) Query: 145 NCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVN 204 N +S+ V + + SD HK W+ S VA + +S +L++KL +EN ++ RM A+ Sbjct: 166 NGLSEKVRRCLASDPHKIWSASEVAEHMTMSEVVLRRKLAAENILLRDLMIDVRMTSALR 225 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTV 252 L IS ++ GY S+S F F+ +G P HR + V Sbjct: 226 LLQGTDWPISLIANQIGYESSSRFAERFRKRFGFAPTAIRGHHRLQPV 273 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDW-NLSMVASCLCLSPSLLKKKLK 184 L FL + L+ + N ++ + ++++S I ++ L+ VAS L LSP L+++L Sbjct: 211 LEEFLKAAPAQLLVKFKNTNSLTSRIREVLKSQIGEEMPTLNDVASMLYLSPQTLRRRLA 270 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 +E SY + R A++ L+ + V+Q G++ TS F FK + G+TP Y Sbjct: 271 AEGKSYQGVKDALRRDAAIHLLLNPELTLEDVAQQVGFSETSTFHRAFKKWTGVTPGLYR 330 Query: 245 SQH 247 H Sbjct: 331 QLH 333 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 2/156 (1%) Query: 90 LPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSD 149 +P + D A +++ E ES E T+ L + L + + + S Sbjct: 100 VPAVETDKALQATLNALFSFERESLSEATQRYWMMGLYQQLAERGLLHRLFTSSNTSFSQ 159 Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMD 209 + + + D L VA +S + L +KLK E T Y +++ R+ +A+ LM + Sbjct: 160 KLSRYLSRSPGDDHPLEFVAERFAMSRATLIRKLKQEGTQYREVLAEVRLNHALY-LMQN 218 Query: 210 GK-NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 G N++ ++Q CGY S F FK +G+TP Y+ Sbjct: 219 GSYNVALLAQLCGYQSEGRFSQRFKGKFGLTPSEYI 254 >UniRef50_Q8GBY6 Sensor protein n=1 Tax=Prevotella bryantii RepID=Q8GBY6_PREBR Length = 834 Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 6/111 (5%) Query: 145 NCVSDSVYQIIESDIHK-----DWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCR 198 N D + ++I +I+K D N+ M+A + LS L +K+K N + I R Sbjct: 724 NSADDRLIEMIVEEINKNLTNSDLNVDMLAEKVGLSRVHLYRKMKELTNQTPHGFIRNTR 783 Query: 199 MRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 +R A L G N+++V +CG+++ + F ++FK YGM+P Y+ +H++ Sbjct: 784 IRQAARLLREPGHNVTEVMYACGFSNLASFSTMFKSMYGMSPRDYIREHQK 834 >UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW9_9GAMM Length = 350 Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%) Query: 142 MLRNCVSDSVYQIIESDIHKDWN-----LSMVASCLCLSPSLLKKKLKSENTSYSQIITT 196 ++R V + V ++ I +DW L VA L +SP LK++L++ TSY QI + Sbjct: 238 LVRLNVRNDVAGMVRLQI-QDWEGRLPTLEQVAEQLHMSPRTLKRRLQTAGTSYQQIKDS 296 Query: 197 CRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 R R A+++L ++ +++ GY+ S F FK + MTP S+ R+R Sbjct: 297 SRFRRAIHQLEATDSSLESIAELLGYSDASNFTKAFKSWAEMTP----SEFRQR 346 >UniRef50_D2EZ28 Sensor protein n=1 Tax=Bacteroides sp. D20 RepID=D2EZ28_9BACE Length = 1354 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 65/110 (59%), Gaps = 4/110 (3%) Query: 140 MYMLRNCVSDSVYQIIESDIH-KDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTC 197 M L N + QIIE ++ + +++ +A +C+S S L +K+K + S ++ I Sbjct: 1245 MNPLDNEFVQRITQIIEDNLEMEKMDIAFIADQMCMSHSTLYRKIKGVADMSANEFIRKV 1304 Query: 198 RMRYAVNELMMDGK-NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 +M+ V +L++ GK +IS++S G++S +YF FK+ +GMTP YV Q Sbjct: 1305 KMKNGV-KLLLSGKYSISEISYMTGFSSVAYFRQCFKNEFGMTPSEYVKQ 1353 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 51/99 (51%) Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMD 209 +V ++ D + W VA L +S + L+++L ++ S+ ++ R+ A L Sbjct: 215 AVRALVRRDPARPWAAPEVARALGVSDATLRRRLGAKGVSFRALLWKERLDLAKGLLRSG 274 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + +V+ +CGY+S S F F+ G++P Y ++HR Sbjct: 275 RHGVLEVATACGYDSASRFAEQFRRSEGVSPSEYRARHR 313 >UniRef50_C3J952 Sensor protein n=5 Tax=Bacteria RepID=C3J952_9PORP Length = 969 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 61/100 (61%), Gaps = 6/100 (6%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 ++D+VY ++ + HK+ N+S++AS +C+S S +KL + T Y+ R++ ++ Sbjct: 865 ITDTVY--LQLNRHKEVNVSLIASNMCMSSSQFYRKLVAL-TGYTPAAYIQRIKIKKAKI 921 Query: 207 MMDGK---NISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 ++DG + S+V+ CG+N+ S F+ FK+ G+TP Y Sbjct: 922 LLDGDPNISFSEVADQCGFNNYSNFVRAFKNVCGITPTDY 961 >UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RT58_SEROD Length = 294 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 47/97 (48%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAV 203 R V + ++ + DW L +S S L+++L+ E S+ +++ RM + + Sbjct: 194 RQGVLPRLSHLLRASPETDWTARSAGEALAMSESTLRRRLREEGGSFEKLLVDIRMHHGL 253 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 + N++QV+ +CGY S S F F +G+ P Sbjct: 254 MLIQTTRWNMAQVADACGYKSVSRFAERFTQRFGLPP 290 >UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK40_BACSK Length = 407 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMD 209 VY+ +E+ + +L VA L L+ + L K+ K E +S I RM AV L Sbjct: 311 VYEYVEAHFFEQPSLQEVADHLFLNAAYLSKRFKEETGEKFSDYIHRLRMDRAVELLAET 370 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 +SQ+++ GY SYFI VFK + MTP + S+ Sbjct: 371 NMKVSQIAKKLGYKDASYFIKVFKREFHMTPQEFRSR 407 >UniRef50_B3C929 Sensor protein n=8 Tax=Bacteroides RepID=B3C929_9BACE Length = 1344 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 2/108 (1%) Query: 143 LRNCVSDSVYQIIESDIH-KDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMR 200 L N + QIIE +I + +++ +A +C+S S L +K+K + S ++ I +MR Sbjct: 1237 LDNEFMQKITQIIEENIEMEKMDVAFIADKMCMSHSTLYRKIKGLADMSANEFIRKVKMR 1296 Query: 201 YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 +V L+ IS++S G++S +YF FK+ YG++P YV Q + Sbjct: 1297 KSVEMLISGEYTISEISYMTGFSSVAYFRQCFKNEYGVSPSGYVKQKQ 1344 >UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LMQ1_PROMI Length = 263 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 47/76 (61%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDG 210 V II SD+ W+L ++S L +S S L+KKL++E T++ ++TT RM +A+N L Sbjct: 161 VKDIIISDLQHSWSLKEISSKLFISESSLRKKLEAEKTNFMTLLTTVRMAHAMNLLATTN 220 Query: 211 KNISQVSQSCGYNSTS 226 I Q+S GY +TS Sbjct: 221 LTIGQISSLSGYKNTS 236 >UniRef50_A7M014 Sensor protein n=1 Tax=Bacteroides ovatus ATCC 8483 RepID=A7M014_BACOV Length = 1321 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 31/144 (21%) Query: 109 AETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMV 168 AE +S ER + V+++FLD +F N+ M+ Sbjct: 1205 AENKSGDERLMERVMNVMNKFLDDSEF----------------------------NVEML 1236 Query: 169 ASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGK-NISQVSQSCGYNSTS 226 A + LS L +K+K S S I RM+ A L+ +GK NIS+++ + G++S + Sbjct: 1237 AREVGLSRVQLHRKMKDITGVSTSVFIRNLRMKKAA-ALLQEGKLNISEIADAVGFDSQA 1295 Query: 227 YFISVFKDFYGMTPLHYVSQHRER 250 F +VFK FYG++P Y + R + Sbjct: 1296 NFATVFKKFYGVSPSEYAASIRNK 1319 >UniRef50_P68913 Uncharacterized HTH-type transcriptional regulator Rv1395/MT1440 n=15 Tax=Mycobacterium RepID=Y1395_MYCTU Length = 344 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 4/106 (3%) Query: 142 MLRNCVSDSVYQIIESDIHKDWNL----SMVASCLCLSPSLLKKKLKSENTSYSQIITTC 197 M RN + ++ S + +D L + VA L + P L+++L E TS+ ++ Sbjct: 235 MQRNERRRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEA 294 Query: 198 RMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 R AV+ L G + QVS GY S F FK +YG+ P Y Sbjct: 295 RSTVAVDLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEY 340 >UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 Tax=Aeromonas RepID=A0KMW4_AERHH Length = 270 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 1/129 (0%) Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 E T+A L L + + L+ + + + + + + D L VA +S Sbjct: 125 EATQAQLLQGFYAELQAAGGLDLLFPAHTMTLGERLARYLGVEPGADHTLEGVAPHFAMS 184 Query: 176 PSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDF 235 + + +KL +E S+ Q++T RM +A+ L+ G + + +CGY+S S F + FK Sbjct: 185 RASMARKLAAEGRSFRQLLTQVRMSHALT-LLQQGLVPLETALACGYDSPSRFAARFKQE 243 Query: 236 YGMTPLHYV 244 +G+TP Y+ Sbjct: 244 FGLTPYQYL 252 >UniRef50_A6B243 Transcriptional activator of virulence loci n=4 Tax=Vibrio parahaemolyticus RepID=A6B243_VIBPA Length = 247 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 54/101 (53%) Query: 145 NCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVN 204 + +S+ ++++I I W ++ L +S + L +++ E T+ S +I + RM A Sbjct: 132 DSISERIHRLISKQIQHRWTAEEISKNLNMSKATLMRRISQEKTTLSDLILSARMNKAAY 191 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 L+ I +V+ G++S SYF FK+ YG +P +V+ Sbjct: 192 LLLKKKHPIKKVAHLTGFSSASYFCKKFKETYGNSPKQFVN 232 >UniRef50_A5W7M3 Transcriptional regulator, AraC family n=3 Tax=Pseudomonas RepID=A5W7M3_PSEP1 Length = 309 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 162 DWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSC 220 D NL VA+ LSP+ L L+ E ++S+++ RM A N L+ + + +V++ C Sbjct: 212 DLNLQKVAAATYLSPTYLTHWLRKEIGKTFSELVLERRMHAARNYLLNGSRPVGEVARLC 271 Query: 221 GYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 G+ +YF F+ +G+ P + Q R+ Sbjct: 272 GFADEAYFSRRFRQIHGLPPGQFRRQQRD 300 >UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8Q2W3_9ENTR Length = 285 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 43/80 (53%) Query: 161 KDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSC 220 K W + L +S S L+++L+ E + Q++ RM +A+ + N++QV+ +C Sbjct: 202 KGWTAKVAGDALAMSESTLRRRLRQEGVRFEQLLLDIRMHHALMLIQTTHWNLAQVADAC 261 Query: 221 GYNSTSYFISVFKDFYGMTP 240 GY S S F F+ +G +P Sbjct: 262 GYKSVSRFTERFRYRFGNSP 281 >UniRef50_A3J4H6 Two-component system sensor histidine kinase/response regulator, hybrid ('one component system') n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J4H6_9FLAO Length = 254 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 1/105 (0%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSENTSYSQIITTCRMRYA 202 +N D + I+ +I D + +AS + +S S + KK+ K + + S I R+ YA Sbjct: 146 KNDFFDKIDDIVIRNIKTDVTIEKLASEIFVSKSTIDKKIRKFKQVNVSTYIREIRLNYA 205 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 + + N+ ++ CG+NSTSYF FK++ G++P Y++Q Sbjct: 206 IKLIESGEVNVDTLAIECGFNSTSYFSVCFKNYSGLSPKKYINQK 250 >UniRef50_A9U895 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U895_PHYPA Length = 306 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENT-SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGY 222 NL MVA+ + L+PS L + K E ++S+ + R+ A L D ++ Q+S G+ Sbjct: 112 NLEMVAASIGLNPSYLSRLFKEETQCNFSEYVNRIRIDAAQKLLESDQYSVKQISSQVGF 171 Query: 223 NSTSYFISVFKDFYGMTPLHYVSQHR 248 + +YF VFK+ GMTP YV R Sbjct: 172 TTYNYFFKVFKELTGMTPHAYVESLR 197 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 50/93 (53%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDG 210 V ++IE+ L+ VAS L +S LK++L+ E S+ ++ R+ A + L Sbjct: 244 VRRVIETSHPFPPKLARVASTLYVSERTLKRRLQEEEASFQALVDQVRLERARDLLASTT 303 Query: 211 KNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 N+SQ++ S GY + F FK + G++P H+ Sbjct: 304 MNLSQIADSLGYADAANFTRAFKRWTGLSPSHF 336 >UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTM5_MARMS Length = 257 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 50/94 (53%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDG 210 + ++++ +D+ L VA+ +S + L ++LK ENT + ++T RM YA++ + Sbjct: 161 ITELLQQAPWQDYQLDQVATHFSMSRATLIRRLKEENTQFRTLLTRVRMNYALSLMQQGY 220 Query: 211 KNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + ++ CGY S F F +G+TP Y+ Sbjct: 221 RQQMDIAVRCGYQSQERFSQRFYKSFGITPSQYI 254 >UniRef50_Q0VQ50 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VQ50_ALCBS Length = 354 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 48/84 (57%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 L +A L + P L+++L++ENT +S ++ R R A + L+ ++++Q++ GY+ Sbjct: 264 QLEPIADQLGIKPWTLRRQLRAENTDFSSLLEDERRRLACDWLLHSERSVNQIALDLGYS 323 Query: 224 STSYFISVFKDFYGMTPLHYVSQH 247 S F FK ++ +TP+ Y S Sbjct: 324 EQSAFNRAFKRWFSITPVQYRSHQ 347 >UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C05 Length = 511 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 11/127 (8%) Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 RA+L VL++ D+ ++ ++N V D + D L +A + L+P+ Sbjct: 385 RAVLNEVLAKRTDAAGDSPRIVERIKNIVRD--------EYRNDIGLEDIAERVNLAPAY 436 Query: 179 LKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGK-NISQVSQSCGYNSTSYFISVFKDFY 236 L K E + + IT RM A +L+ +G+ I V+++CGY + YF +FK++Y Sbjct: 437 LSYLFKKETGANLVKYITDYRMEQA-RKLLEEGELKIVLVAKACGYENQPYFNRLFKNYY 495 Query: 237 GMTPLHY 243 GMTP Y Sbjct: 496 GMTPRQY 502 >UniRef50_C6D7J5 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7J5_PAESJ Length = 544 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 145 NCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAV 203 N V + + IE +I ++ +L MVA +PS L + KS+ N +Y +T R+ YA Sbjct: 437 NAVFNQIKGFIEKNIDQELSLQMVADHFFYNPSYLSRLFKSKLNQNYLSFVTEIRIDYAK 496 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 L + ++ V CGY S +F+ +F+ G TP Y Q Sbjct: 497 KLLRDTNRLVTDVCTMCGYKSYKHFVKMFRLVAGTTPTDYRRQ 539 >UniRef50_UPI0000F30067 putative transcriptional regulator AraC/XylS family protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F30067 Length = 194 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 50/98 (51%) Query: 143 LRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYA 202 + +S+ V +I + + +A+ L +S S L++KLKSE S I R+ + Sbjct: 87 MNKSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNRVRLGHG 146 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 ++ + +I ++ CGY S S F FK+ +G+TP Sbjct: 147 LHLIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITP 184 >UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=Cupriavidus RepID=Q46N37_RALEJ Length = 322 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 11/154 (7%) Query: 105 SMMPAETESEKERTRAL-------LFTVLSRFLDSKKFVS--LMMYMLRNCVSDSVYQII 155 MM AE E+ + A+ LFTVL R L S+ V+ ++ + ++ +V ++ Sbjct: 160 GMMHAEAETPRPGGAAIIADLSTALFTVLLRTLISRGTVTRGVLALLADTRMAKAVDAVV 219 Query: 156 ESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNIS 214 S + W + +A +S + L ++ + +++TT RM A L D + + Sbjct: 220 GSP-ERPWTIESLAQSANVSRATLARRFTQLGGITPLELVTTLRMERAARLLQQDNLSAA 278 Query: 215 QVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 V++ CGY S + F F +G+ P Y Q R Sbjct: 279 AVAERCGYASQAAFGRAFSGQFGVGPGAYRRQQR 312 >UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGM0_SALAR Length = 296 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 51/95 (53%) Query: 146 CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNE 205 S+ V +I SD K+W +A + +S S KKK+ + S S IT +M A+ + Sbjct: 183 TTSEKVASLIMSDYSKNWQSKDLAMQMNMSVSTFKKKMYKDTGSVSSYITKIKMIEALRQ 242 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 L + I+ ++ S GY S+SYF SVFK + + P Sbjct: 243 LRRTNRPINSIAISLGYTSSSYFTSVFKKHFKIFP 277 >UniRef50_C5ET72 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET72_9FIRM Length = 539 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 5/105 (4%) Query: 144 RNCVSDSVYQ---IIESDIHKD-WNLSMVASCLCLSPSLLKKKL-KSENTSYSQIITTCR 198 R+ + + V Q II+ D K +L+ +AS L +SPS L + K + S + IT CR Sbjct: 421 RHFIEEVVLQSQKIIDRDFAKACLSLNTIASELLVSPSYLSRSFTKIQGISLTAYITRCR 480 Query: 199 MRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 M +A + L +I+Q+S+ GY+ YF FK F+G+ P Y Sbjct: 481 MEHARDLLKNTDMSIAQISEQSGYSDLFYFSKRFKSFWGVPPSRY 525 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 115 KERTRAL---LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASC 171 KE ++A+ L L ++L K + L+ ++ + Q D +++ + V Sbjct: 126 KELSQAIQQQLVNGLYQYLAEKGQLHLLYAPQEISWTEKLTQFFSQDPSQNYTIEQVCQQ 185 Query: 172 LCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 LS + L ++L E+T + +++ RM +A++ L + + +++Q CGY S F Sbjct: 186 FGLSKATLMRRLNDESTQFREVLAQVRMGHALSLLQEKSQTVLELAQQCGYQSEVRFTQR 245 Query: 232 FKDFYGMTPLHY 243 F+ +G++P Y Sbjct: 246 FQKQFGLSPKQY 257 >UniRef50_A6EEH6 Two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') n=1 Tax=Pedobacter sp. BAL39 RepID=A6EEH6_9SPHI Length = 253 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 2/99 (2%) Query: 149 DSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNEL 206 + + IIE+++H D++++++A + +S ++L KK + T + I T R++ A L Sbjct: 152 EKLMNIIEANLHDTDFHVAVLAEKIGMSKAVLYKKFYALAQTPIGEFIKTIRLKKAAILL 211 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 D NIS+V+ G++ YF FK F+G +P Y++ Sbjct: 212 TNDKFNISEVAWEVGFSDRKYFSKEFKRFFGKSPSEYIA 250 >UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein n=4 Tax=Acinetobacter RepID=B2I0Q2_ACIBC Length = 270 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 50/98 (51%) Query: 143 LRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYA 202 + +S+ V +I + + +A+ L +S S L++KLKSE S I R+ + Sbjct: 163 MNKSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNRVRLGHG 222 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 ++ + +I ++ CGY S S F FK+ +G+TP Sbjct: 223 LHLIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITP 260 >UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N5F0_9GAMM Length = 339 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 1/108 (0%) Query: 144 RNCVSDSVYQ-IIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYA 202 +N ++ V Q +I+S HK L VA L +S L++K K + T++ I+ R YA Sbjct: 225 KNAANEVVTQFVIDSLQHKVPTLQDVAEHLGVSARNLQRKFKQQGTNFKTIVDDIRKEYA 284 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 L+ ++ ++Q G++ S F FK + GMTP Y H R Sbjct: 285 FTYLLQTNYKMTYIAQILGFSEQSVFQRAFKRWTGMTPGEYRIHHGVR 332 >UniRef50_B3CHH8 Sensor protein n=3 Tax=Bacteria RepID=B3CHH8_9BACE Length = 1368 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 2/105 (1%) Query: 148 SDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNE 205 + S ++IIE +I + + + +++ L LS + L +KLK+ S +++I R+ A Sbjct: 1259 TQSFFEIIEKNISNPELGVDLLSQELGLSRANLYRKLKAVTELSPTELIRNKRLEIAAKL 1318 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 L+ +S++S G+NS +YF + FK FYG +P +V +H ++ Sbjct: 1319 LLESSYTVSEISVYTGFNSHAYFTNCFKSFYGYSPSEWVQRHNDK 1363 >UniRef50_Q1GKL0 Transcriptional regulator, AraC family n=2 Tax=Ruegeria RepID=Q1GKL0_SILST Length = 237 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 51/103 (49%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 ++D ++ +I SD + W + A+ L LS L++ L +E +S + R A + L Sbjct: 129 LTDHLHHLIASDPARAWRIEETAAWLGLSTRSLQRYLLAEGGRFSATLRHMRTSLASDML 188 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 +++ ++ CGY ++F F+ G TP + SQ RE Sbjct: 189 RNSDQSLGEIGFCCGYADQAHFQREFRKVSGQTPRRFRSQPRE 231 >UniRef50_A0Z5W5 Transcriptional Regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5W5_9GAMM Length = 343 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 152 YQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGK 211 +QI + + + VA+ L + L++ LK+E S+ +++ T R R+A+N+L + + Sbjct: 246 WQITATILDGSVTQTAVAAHLGVEIRTLQRHLKAEGASFQELLATVRKRHALNQLSCN-R 304 Query: 212 NISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 I+Q+ GY S F + FK ++G++P +Y Sbjct: 305 PIAQIGYELGYTDPSAFCNAFKKWFGVSPGNY 336 >UniRef50_C6CVB2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVB2_PAESJ Length = 542 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTS-YSQIITTCRMRYAVNELMM 208 +V I++++ KD +L +A + L P L K K+E ++ + RM A L Sbjct: 440 AVRSFIDANLAKDVSLPAIADHVHLHPVYLSKIYKAETGEPLTEYVYRLRMEKAAFLLRT 499 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + ++S+ GYN+T+YFI VFK F+ +TP Y Sbjct: 500 TPSKVFEISEIVGYNNTAYFIRVFKKFFDVTPQEY 534 >UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CUB1_AGRT5 Length = 246 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 57/112 (50%) Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENT 188 L + + LM + V+++V +I + W+ + VA+ L +S + L+++L+ EN Sbjct: 123 ILAEQGALPLMPKYVDGSVTEAVRLLIRHRLDHAWSTAAVAASLSMSEATLRRRLRDENQ 182 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 S ++ RM+ A L ++++ + GY S S+F F+D +G P Sbjct: 183 SLRALLLAERMQAAYLILSDRDADVAEAIAATGYASRSHFSRRFQDAFGQAP 234 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 5/101 (4%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMD 209 V QI+ D +D +S +A L ++ L + K E N S+SQ + R++ A N L+ Sbjct: 392 VLQIVLKDYAQDITISSIADTLHMNAMYLGQLFKKETNKSFSQYLNHFRIKEAQNLLLKS 451 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 NI+++++ GY S+ YF FK G++P Y RER Sbjct: 452 NHNINEIAELVGYTSSGYFYKNFKKECGISPKEY----RER 488 >UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_9BACE Length = 1382 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 4/101 (3%) Query: 149 DSVYQIIESDIHKD-WNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNEL 206 + + +IIE ++ + ++ +A L +S S L +K+K+ S + I R+R A +L Sbjct: 1281 ERITRIIEENLMDEKIDVPTIAQELSMSYSSLYRKIKALTGMSTGEFIRKLRLRKA-EQL 1339 Query: 207 MMDGK-NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 ++ GK NIS+++ G NS SYF FK+ YGM+P Y+ Q Sbjct: 1340 LLSGKYNISEIAHQVGLNSVSYFRECFKEEYGMSPSEYIKQ 1380 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/243 (22%), Positives = 108/243 (44%), Gaps = 15/243 (6%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 R+ D+P ++ + +R G+E ++++A M LL DV + + + Sbjct: 28 RMAVDEPTLLYIQVGQKTLRWRGQE-LTIQAGEMVLLAA-GQTFDVLNNPDAKLGFYQAG 85 Query: 62 IIKDYLRFLNK--DLSQIPVWQRSATPILTLPCLTP--DVFRVAAQHSMMPAETESEKER 117 I R +++ DL + + + I L L DV R A ++ P K Sbjct: 86 WIALEQRVVDEFADLFGVETYVQELAKIQPLAPLKAHFDVVRQALENDEAPELVLKLK-- 143 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 LF +L+ + +S + + N + + ++I S+ +W +A L LS + Sbjct: 144 ----LFELLAWL--KAEHLSFVPHEKHNLLR-QIRKMIASNTAFEWTAETIARQLHLSET 196 Query: 178 LLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 L++ L+ +T++ +++T RM A+ L + +++++ GY+S S F FK +G Sbjct: 197 SLRRALQKSDTTFREVLTDVRMSRALTLLQITKWQVARIANEVGYDSPSRFTVRFKQRFG 256 Query: 238 MTP 240 P Sbjct: 257 FLP 259 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 49/97 (50%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAV 203 R + V +I ++ K W+ +A L LS + L++KL E ++S+I+ RM A+ Sbjct: 168 RADIQRKVRLLIGAEPDKKWSSQDIAESLALSEATLRRKLAKEGNAFSEILVDVRMSLAL 227 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 + L I+ ++ GY S S F FK +G +P Sbjct: 228 SLLQSTDAAIASIAYQVGYESASRFSVRFKQRFGFSP 264 >UniRef50_Q5LKF5 Transcriptional regulator, AraC family n=1 Tax=Ruegeria pomeroyi RepID=Q5LKF5_SILPO Length = 331 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 42/80 (52%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 +++ VA L L+P L+++LK + YS I R AV L G ++ ++ G++ Sbjct: 247 DMAQVARDLNLAPHTLRRRLKGDGVDYSNIRKQVRRDMAVRLLATTGDSVESIAAQTGFS 306 Query: 224 STSYFISVFKDFYGMTPLHY 243 S FI F+ + G+TP Y Sbjct: 307 EASAFIRAFRSWTGLTPRAY 326 >UniRef50_B0NYF7 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NYF7_9CLOT Length = 320 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 154 IIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKN 212 I+ D+ K ++ + +A +S + LK + YS+++ RM+ A ++ + Sbjct: 211 ILTEDLSKRYSAATLAKHFGISETSLKNYFQGVYGRGYSELLNEIRMKKAAELILKNSMK 270 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 IS++S + G+ + S F FK++YG PL Y +H Sbjct: 271 ISEISDAVGFATQSRFAKAFKNYYGAAPLEYKRKH 305 >UniRef50_Q0TS33 Transcriptional regulator, AraC family n=6 Tax=Clostridium perfringens RepID=Q0TS33_CLOP1 Length = 506 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 3/96 (3%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTS-YSQIITTCRMRYAVNE 205 +++ V +II+++ + +L +A + +P+ L K E S + IT RM A E Sbjct: 404 IANKVIKIIKNEYSSELSLDYIADKVNFTPTYLSYVFKKETGSNIVKYITDFRMNKA-KE 462 Query: 206 LMMDGK-NISQVSQSCGYNSTSYFISVFKDFYGMTP 240 + +G I QV ++CGY + SYF +FK+++G+TP Sbjct: 463 FLEEGNMKIVQVGKACGYENQSYFNRIFKNYFGVTP 498 >UniRef50_A3M2M8 Transcriptional Regulator (AraC family) n=8 Tax=Acinetobacter RepID=A3M2M8_ACIBT Length = 335 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 4/116 (3%) Query: 138 LMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTC 197 L + N ++ ++IE D+ VA L LS L++KL +ENTSYS+++ Sbjct: 222 LARFDKENILARVKVKLIEKLSTGDFQQQDVAKSLGLSIRSLQRKLSAENTSYSELLDQT 281 Query: 198 RMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA 253 R A++ + NI++++ G+ S F F+ + ++P+HY RE+ +A Sbjct: 282 RHELALSYIKNSSHNITEIAYILGFTDVSSFTRAFRRWTDLSPIHY----REKYLA 333 >UniRef50_C6Y0D7 Sensor protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0D7_PEDHD Length = 1363 Score = 55.8 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%) Query: 154 IIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGK 211 ++E +I +D+N SM S + +S +++ KLK + S I T R++ A ++ Sbjct: 1263 VVEQNIGTEDFNASMFISEMNMSRTVIYTKLKVLTGQNISTFIRTIRLKKAGQLIIQTSM 1322 Query: 212 NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 NIS+++ G+N YF FKDF+ +TP Y +H Sbjct: 1323 NISEIAYEVGFNDLKYFRECFKDFFKLTPSEYKRKH 1358 >UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V3H9_9FIRM Length = 255 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 43/89 (48%) Query: 155 IESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNIS 214 +E I + + VA L LS S L K TS+S +T CR+R A + L + Sbjct: 161 MEEHIAEPITVREVADELGLSVSYLHKLFSRCGTSFSSYLTECRLRRAGHLLRESDAKVY 220 Query: 215 QVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 V+ +CGY T YF +F+ GM P Y Sbjct: 221 AVAAACGYQDTRYFSKIFQKHMGMKPTEY 249 >UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21JI5_SACD2 Length = 344 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 1/97 (1%) Query: 148 SDSVYQIIESDIHKDWNLS-MVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 +D V I++ D+ S VAS L +S + L++KL+++NTSY ++ CRM A + L Sbjct: 245 ADKVRNILKKDVSASMPSSDEVASQLHMSTTTLRRKLQNDNTSYQRLKDECRMEAAFHLL 304 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + ++++Q G++ S F FK + G TP Y Sbjct: 305 NCADLSNNEIAQKLGFDEPSAFFRSFKKWTGQTPGEY 341 >UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXJ1_9GAMM Length = 331 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAV 203 R VSD V ++ H +L VA L +SP L +KLK ENT + Q+ R A Sbjct: 230 RGTVSDQVLALLHQH-HGKASLDTVADQLHMSPRTLIRKLKQENTRFQQLRDQTLSRRAA 288 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 L + ++ V++ GY + F F+ ++G TP Sbjct: 289 QLLGLPHYTVAAVAEDLGYTDVASFRRAFQRWFGTTP 325 >UniRef50_B5JY44 Transcriptional regulator, AraC family, putative n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JY44_9GAMM Length = 337 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 6/117 (5%) Query: 133 KKFVSLMMYMLRNCVSDS-----VYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKSE 186 + F +L SDS V Q IES I + +++ +A L ++ L+++LK E Sbjct: 215 QSFAEKAQVLLSRLPSDSSLAAEVVQAIESKIGYAVFSMQDIAGELNMTQRTLQRRLKEE 274 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 TSY+Q+ + R R+A L +++ ++ + G++ + F + FK + GM+P Y Sbjct: 275 GTSYAQLRDSVRFRFAEEYLRDSSMDMATIAANLGFSEPANFYAAFKRWQGMSPGEY 331 >UniRef50_C6CWQ4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWQ4_PAESJ Length = 538 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%) Query: 155 IESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGK-N 212 I+ +D L M A +PS +KS S+S +T R+R A EL+ G+ Sbjct: 435 IQGHYAEDLTLEMAAEQFHFNPSYFSTLMKSRTGRSFSDHLTEARIR-AAKELLAGGRFK 493 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERT 251 I ++++ CGY T YF +FK G++P Y R +T Sbjct: 494 IYEIAEQCGYRDTKYFTRIFKRQVGLSPEAYKHTLRPQT 532 >UniRef50_A9KRK4 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRK4_CLOPH Length = 778 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 4/107 (3%) Query: 145 NCVSDSVYQIIESDIHKDWNLSM--VASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRY 201 N + ++ QIIE + +KD NLS +AS L LS S + K K E S ++ + R++Y Sbjct: 669 NMLVSTIIQIIEEN-YKDPNLSQEWIASTLKLSYSNVGKVFKLVEKVSIAEYVNKVRLKY 727 Query: 202 AVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 A L +I+ + S G+ + SYF ++FK ++G TP Y Q + Sbjct: 728 ACELLENTNYSINDIFNSVGFVNQSYFFTLFKKYFGCTPKQYQLQKK 774 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 7/104 (6%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSM--VASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMR 200 R + +++ I E+ + D N+S+ +A L ++P+ L KSE ++S +T CR+ Sbjct: 260 RKLIDEAIKLIQEN--YSDLNISLNSIAEKLYITPNYLSTLFKSEMGVTFSDYLTACRIE 317 Query: 201 YAVNELMMDGK-NISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 A EL+ D K I +V+++ GY YF VFK+ G TP Y Sbjct: 318 KA-KELLKDVKVKIYEVAEAVGYTDQHYFSKVFKNITGFTPKEY 360 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 42/80 (52%) Query: 168 VASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 VA L LSP L+++LK E TSY ++ R A++ L +I +++Q G+ S Sbjct: 251 VAEQLGLSPQTLRRRLKEEGTSYQELKDLIRRDIALHFLNKPQYSIHEIAQKVGFAEPSA 310 Query: 228 FISVFKDFYGMTPLHYVSQH 247 F FK + G+TP Y H Sbjct: 311 FHRAFKKWVGLTPSDYRQTH 330 >UniRef50_D1PFT7 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PFT7_9BACT Length = 1334 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 2/103 (1%) Query: 149 DSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNEL 206 + V ++I +I ++D ++ M+A + LS L +++K N + I R++YA L Sbjct: 1231 EQVMKVINDNIGNEDLSVDMIAREVGLSRVHLHRRMKELTNQTPHAFIRNTRLQYAEKLL 1290 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 K IS + SCG+++ + F ++FK+FYG +P Y+ HR+ Sbjct: 1291 SHSNKTISDIMFSCGFSNPASFSTMFKNFYGSSPRDYMQAHRK 1333 >UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photobacterium angustum S14 RepID=Q1ZU86_PHOAS Length = 239 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 51/95 (53%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMM 208 +S+ ++ +D+ + W+ ++ L LSP+ L ++L +NTS ++ R+ A L Sbjct: 140 NSITCLVSNDLKRKWSYDLICELLYLSPATLYRELSKKNTSLKELTNNLRLTEAATLLRG 199 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + +++ G+ S+SYF VFK + TP+ Y Sbjct: 200 TKLPVGKIANEVGFGSSSYFGKVFKQTFNCTPVEY 234 >UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BGF1_9BURK Length = 469 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 51/94 (54%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 V+ VYQ + + ++ +A LC++ L++KL++E TSYS ++T+ R A++ L Sbjct: 367 VTRRVYQELTRTPGQFPDIDAIADSLCITSRTLRRKLEAEGTSYSALLTSVRKALAIDYL 426 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 +I ++ + G++ F FK + G TP Sbjct: 427 STTTLSIDDIASTLGFSDAVGFRHAFKRWTGTTP 460 >UniRef50_C0ECP0 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECP0_9CLOT Length = 355 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 20/214 (9%) Query: 42 NNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVA 101 N ++D S N + +S D F N L I R A P L L TP++ R+ Sbjct: 146 NLLVDRSWAENVFASLLSFD-----HGFFNFFLDSIYGLNRMA-PYLILDN-TPELTRIF 198 Query: 102 AQHSMMPAETESEKERTRALLFT-------VLSRFLDSKKFVSLMMYMLRNCVSDSVYQI 154 Q M AE EK + +LF+ +LSR D + + ++ + V+D + Sbjct: 199 HQ---MIAEYFEEKACYQQILFSKLIELFAILSRQQDDSRRKKDLEFLQQRDVAD-ILNY 254 Query: 155 IESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSY-SQIITTCRMRYAVNELMMDGKNI 213 I+ + +++ +L+ A +P+ L K +K Y S I+ ++ A N L +I Sbjct: 255 IKVN-YREISLAKAAEFFNYTPNYLSKIIKRHTGRYFSDILQEYKLESACNYLTHSSLSI 313 Query: 214 SQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 ++++ GY+ SYF VF YG++P Y QH Sbjct: 314 EKINEIIGYSDASYFSKVFSKRYGLSPNQYRQQH 347 >UniRef50_Q1GDX2 Transcriptional regulator, AraC family n=2 Tax=Ruegeria RepID=Q1GDX2_SILST Length = 386 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 50/92 (54%) Query: 154 IIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNI 213 I++ D +L+ VA L +S L +KL SE TS+ I+ R A+ L + K++ Sbjct: 285 IMDGMSEGDASLAQVAESLDMSQRTLSRKLASEGTSFFAILEGVRKSLALRYLQQNEKSL 344 Query: 214 SQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 S++S + GY+S S F F+ +Y +P Y S Sbjct: 345 SEISFALGYSSLSSFNDAFRRWYDQSPGSYRS 376 >UniRef50_D0IBR3 Signal transduction histidine kinase n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IBR3_VIBHO Length = 935 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 6/89 (6%) Query: 162 DWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSC 220 D++ S++A +C+S L+++ K E ++ + + T R+ A ++ G I+ V+ +C Sbjct: 840 DYSTSVLAKAMCVSERSLQRRFKLEFGITFKEALITTRLENA-KRMLCQGDKITDVAVAC 898 Query: 221 GYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 G+N SYF FK YG TP SQ RE Sbjct: 899 GFNEPSYFTKSFKAKYGKTP----SQFRE 923 >UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM0_9FIRM Length = 248 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYS--QIITTCRMRYAVNELM 207 +V I++ + L +A+ L +P L + E+ YS Q I R+ A N L+ Sbjct: 142 TVKAYIDAHYRESITLQSIAAELNFNPYYLAHAFR-EHIGYSPMQYIIRRRIGEAQNLLI 200 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 ++I++++ SCGYN+++YF SVFK GMTP Y Sbjct: 201 GTDRSITEIAFSCGYNNSNYFQSVFKRLVGMTPGQY 236 >UniRef50_B6BG36 Transcriptional Regulator, AraC family, putative n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BG36_9RHOB Length = 349 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 44/87 (50%) Query: 160 HKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQS 219 + + + +A+ L +S L+++L+ E +S+++ CRM A L+ G + +S+ Sbjct: 247 RESFEQTAIAAALGMSRRTLRRRLEDEGQKFSRLLAGCRMEIAKRMLLAPGAQLHDISER 306 Query: 220 CGYNSTSYFISVFKDFYGMTPLHYVSQ 246 GY+ S F F+ G TP + Q Sbjct: 307 LGYSEVSAFERAFRQREGATPSQFRKQ 333 >UniRef50_UPI0001968F18 hypothetical protein BACCELL_00802 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001968F18 Length = 1345 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 2/105 (1%) Query: 145 NCVSDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYA 202 N + D V II +I + + + M+A + +S L +KLK N S +I R++ A Sbjct: 1231 NKLLDKVMNIINRNISNPELTVEMIAKEIGISRVHLHRKLKELTNQSTRDLIRNVRLKQA 1290 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 N L+ ++++V+ G++S + F FK+ YGMTP Y+ +H Sbjct: 1291 ANLLIYKRYSVTEVASLTGFSSITLFSRSFKELYGMTPSEYIGKH 1335 >UniRef50_C7CT88 Predicted protein n=22 Tax=Enterococcus faecalis RepID=C7CT88_ENTFA Length = 372 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 164 NLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGY 222 NL +A + L+P+ L + LK E +SQ ++ +A L+ K I+Q+S+ G+ Sbjct: 241 NLQELADLVHLTPTYLSRLLKEEFGIPFSQFYRQLKITWAKQLLLETDKTIAQISEDLGF 300 Query: 223 NSTSYFISVFKDFYGMTPLHY 243 SYF+ +FK G TPL Y Sbjct: 301 VEDSYFVRIFKQETGETPLKY 321 >UniRef50_A1TJQ7 Transcriptional regulator, AraC family n=2 Tax=Acidovorax RepID=A1TJQ7_ACIAC Length = 321 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYA 202 R V + + ++ + L+ A CLSP+ L +K E ++++++T R+ A Sbjct: 199 RRAALARVLRYLRGELAGEPTLASAAEAACLSPNYLAHLIKKETGRTFTELLTERRLALA 258 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 L+ G+ I ++++ CG+ +YF F+ ++G++P + ++ Sbjct: 259 QELLLATGERIGEIARRCGFADEAYFARRFRQWHGLSPRDWRTE 302 >UniRef50_UPI0001B4CF35 putative AraC family regulatory protein n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4CF35 Length = 357 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 44/80 (55%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 L VA+ L +SP+ L+++L E+TS+ ++ R A+ L G+ I +++ G++ Sbjct: 269 ELREVAARLAVSPATLRRRLDEEDTSFQRLKDQVRRDAAIGSLRETGEPIEELAVRLGFS 328 Query: 224 STSYFISVFKDFYGMTPLHY 243 + F F+ + GMTP Y Sbjct: 329 EAAAFHRAFRRWTGMTPGAY 348 >UniRef50_C6W299 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W299_DYAFD Length = 1335 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 2/96 (2%) Query: 151 VYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMM 208 V IIE+ I D+ + M+ S + +S + L +KLKS S ++II R++ A L Sbjct: 1234 VMNIIEAHISDPDFTVEMLGSEIGMSSAHLSRKLKSLTQFSANEIIKKYRIKKASLMLEN 1293 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 G NIS+V G++S SYF F++ +G+TP Y Sbjct: 1294 KGGNISEVMYDVGFSSLSYFSKCFREEFGVTPKEYA 1329 >UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A3JHC0_9ALTE Length = 342 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 +L VAS L +S L +KLK+E TSY ++ R A L+ + Q+++ GY Sbjct: 257 SLDDVASRLAMSRRTLIRKLKTEGTSYQDLLDGVRQELAAWYLLETTVAVEQIAERLGYQ 316 Query: 224 STSYFISVFKDFYGMTP 240 TS F F+ ++GMTP Sbjct: 317 DTSNFSRTFRRWFGMTP 333 >UniRef50_B2JV94 Transcriptional regulator, AraC family n=17 Tax=Proteobacteria RepID=B2JV94_BURP8 Length = 372 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 53/103 (51%) Query: 138 LMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTC 197 L + + ++ VYQ + + ++ +A LC++ L++KL++E SYS+++T Sbjct: 255 LEQFRWQAGITRRVYQELTRTPGRFPDIEQIAESLCMTSRTLRRKLEAEGASYSELLTGV 314 Query: 198 RMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 R AV+ L ++ ++ + G++ F FK + G TP Sbjct: 315 RKALAVDYLKTTALSVDDIALTLGFSDAVSFRHAFKRWTGKTP 357 >UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N693_9GAMM Length = 342 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 1/108 (0%) Query: 142 MLRNCVSDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMR 200 + + +SD V +++E +I +++ VA L +S L +KLK++N+SYS I+ + Sbjct: 234 LFKRSISDKVRRLVEVNIADSEFDAEQVAKALNMSRQTLYRKLKNDNSSYSDIVEAVKKE 293 Query: 201 YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 A L ++ ++ G++ S F FK + G++P + Q++ Sbjct: 294 KAFKLLKTTSTPLTVIAYDLGFSELSAFTRAFKRWTGLSPAEFRRQNQ 341 >UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Oceanospirillaceae RepID=A6VXK4_MARMS Length = 353 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDW-NLSMVASCLCLSPSLLKKKLK 184 L FL + + L+M N + V ++ D ++ + VAS L +S S L+++L Sbjct: 219 LRGFLKTAPYQLLVMVENDNSLKSQVMAMLGKDFSREMPSADEVASALNMSVSTLRRRLN 278 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 E TSY I CR A+ + +I+ ++ G++ S F FK + GMTP Y Sbjct: 279 DEKTSYQSIKDDCRKEAAITYMNAPQLSINDIAALMGFDEPSAFFRSFKKWTGMTPGEY 337 >UniRef50_C0EGH4 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGH4_9CLOT Length = 344 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 45/201 (22%) Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF----- 123 FL+ L P+ P LT TP + V Q M E +K+ ++ LL+ Sbjct: 168 FLDNSLGMGPL-----KPYLTFDN-TPAINFVLQQ---MIVEFYQDKQYSQQLLYAKLIE 218 Query: 124 --TVLSRFLDSK------------KFVSLMMYMLRNC-VSDSVYQIIESDIHKDWNLSMV 168 ++L+R D K + ++ Y+ +NC V+D L+ Sbjct: 219 LWSLLARQQDEKFEQNKRQHNIPEDVIQILSYLRKNCAVAD---------------LAST 263 Query: 169 ASCLCLSPSLLKKKL-KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 A +P+ L + L K YS+I+ +M AVN L+ +I ++++ GY+ SY Sbjct: 264 AKQFGFTPNYLSQYLYKYTGYHYSEIVLNIKMHNAVNYLLHSNSSIPEIAEMTGYSDVSY 323 Query: 228 FISVFKDFYGMTPLHYVSQHR 248 F VFK +G++P+ Y +Q + Sbjct: 324 FRKVFKKEFGVSPVAYRNQRQ 344 >UniRef50_A6GTF5 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GTF5_9BURK Length = 342 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 48/98 (48%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDG 210 V +++ S+ + W VAS LS L + L+ E TSY + + R A L++ Sbjct: 243 VTELLRSNPGQIWTCEQVASHFHLSSRTLMRYLRDEQTSYQTLRDSELARQAKLSLLVSN 302 Query: 211 KNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + V+ S GY S F FK ++GM+P ++ Q R Sbjct: 303 NTVESVALSLGYQEVSNFRRAFKRWFGMSPQAFIEQSR 340 >UniRef50_C6VNG3 Response regulator n=3 Tax=Lactobacillus plantarum RepID=C6VNG3_LACPJ Length = 486 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 3/101 (2%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYA 202 RN ++ + QII+ + +L+ VAS L L+ L + K E S++Q + R+ A Sbjct: 380 RNVLA--MRQIIKKRYPEQLSLAAVASELHLNAVYLGQLFKQEVGRSFAQFLNDYRVDVA 437 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 V+ L +I Q++++ GY ++SYF +FK GM+P Y Sbjct: 438 VDLLRDSDLDIGQIAEAVGYQNSSYFYKLFKKQTGMSPGDY 478 >UniRef50_A1ZWA4 Activator protein MtlR n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZWA4_9SPHI Length = 290 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNE 205 V + +YQ SDI LS +A +S S LK + + S+I+ R+ YA Sbjct: 185 VMNFIYQNFRSDI----KLSKIAEIANMSSSAFCHFLKKRTHKTLSRILNEIRLGYASQL 240 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 L+ KNIS+++ GYNS SYF FKD Y +P Y Sbjct: 241 LIKTDKNISEIAYESGYNSISYFNKAFKDIYECSPKTY 278 >UniRef50_A4CH85 Serine/threonine kinase n=3 Tax=Bacteroidetes RepID=A4CH85_9FLAO Length = 706 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 154 IIESDIHKDWNLSMVASCLCLS-PSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKN 212 ++E+ +++ +S +A + +S SLL+K K S SQ I R++ + L N Sbjct: 26 LLENIARENFGVSELAEAMNMSRSSLLRKVRKHTGLSASQFIRQVRLKQGMEMLRQTTLN 85 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTP 240 +++VS G+ STSYFI F++ YG P Sbjct: 86 VTEVSYRVGFGSTSYFIKCFREHYGYPP 113 >UniRef50_A6LW09 Response regulator receiver protein n=2 Tax=Clostridium RepID=A6LW09_CLOB8 Length = 446 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELM 207 +SV Q I +I + L VAS LS + K ++S+ + CR+ A EL+ Sbjct: 342 ESVKQFIRENIETELELDKVASNFGLSVYYFSRTFKEVTGVNFSEYVNKCRIDVA-KELL 400 Query: 208 MDGK-NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 G+ N+ +V GYN +YF VFK + G++P ++ E+ Sbjct: 401 STGEMNVKEVCYKVGYNDPNYFSKVFKKYEGVSPANFKGNMEEK 444 >UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33 Tax=Vibrionaceae RepID=A5F2L6_VIBC3 Length = 262 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 N+ V++ +S + L + L +E T + ++++ RM YA+ L+ + + + +V+ +CGY Sbjct: 174 NIETVSAHFAMSRATLARHLAAEGTGFREVLSEVRMNYAL-ALLQELRPLMEVAVACGYQ 232 Query: 224 STSYFISVFKDFYGMTPLHYV 244 S + F + FK Y +TP Y+ Sbjct: 233 SLTRFSARFKQQYRLTPYQYL 253 >UniRef50_B7S1T1 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1T1_9GAMM Length = 361 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 48/80 (60%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 + S +A+ L +S S L+++L+ E+TSY Q+ R + A+++L+ + ++ +S G+ Sbjct: 270 SFSDIAAQLHMSESSLRRRLQGESTSYQQLKDEVRCQVAIDKLLNEDSKVADLSDYLGFT 329 Query: 224 STSYFISVFKDFYGMTPLHY 243 S F+ FK++ G TP Y Sbjct: 330 EPSSFVRSFKNWTGETPRTY 349 >UniRef50_Q48HQ8 Transcriptional regulator, AraC family n=3 Tax=Pseudomonas syringae group RepID=Q48HQ8_PSE14 Length = 315 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 153 QIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGK 211 +++E+ +DW + +A + L+ LK+ + S ++ + R+ A L G Sbjct: 204 KLLEAHPEQDWTIESLAQSVELNTKKLKQGFRQSYDSGVYGYLQKVRIERAAQLLRQQGA 263 Query: 212 NISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 +S+V+ + GY+S S+F VF+ +YG+ PLH+ Sbjct: 264 -VSEVAAAVGYSSASHFAKVFRRYYGINPLHF 294 >UniRef50_A8SQM8 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A8SQM8_9FIRM Length = 523 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 5/104 (4%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMD 209 V Q I + + + M+A + L+PS L K E + S+ I + RM A + L Sbjct: 421 VKQYIYRNYGSELGIDMLADMVYLAPSYLSTVFKKETGQNLSKFIKSYRMERARDMLENS 480 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA 253 I + CGY + SYF S F++FYG++P + RE VA Sbjct: 481 MAKIVDIGAMCGYQNVSYFCSSFREFYGVSPQKF----RESGVA 520 >UniRef50_A0Z5W7 AraC-type DNA-binding domain-containing protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5W7_9GAMM Length = 339 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 137 SLMMYMLRNCVSDSVYQIIESDIHKDWNLS-----MVASCLCLSPSLLKKKLKSENTSYS 191 +LM L+ + S++ +ES I + +VAS L + L++ LK + TS+ Sbjct: 219 ALMEPQLQQVLRASLHHRVESQISQHLQAGNTTPDLVASDLNMGTRTLQRLLKEDGTSFK 278 Query: 192 QIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERT 251 +I+ R +A N L+ + I+QV+ GY+ F FK ++G++P Y+ + T Sbjct: 279 EILKLLRQEHAKN-LLDTREPIAQVASRLGYDDPGTFSKSFKAWFGLSPSDYIENKKNPT 337 >UniRef50_A7M2Q7 Sensor protein n=7 Tax=Bacteroides RepID=A7M2Q7_BACOV Length = 1377 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 164 NLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGY 222 N+ M+A+ + +S + +KLK N S I + R++ A N L ++S+V+ + G+ Sbjct: 1292 NVEMLAANVGMSRVHMHRKLKELTNQSARDFIRSIRLKQAANLLREKNLSVSEVAYATGF 1351 Query: 223 NSTSYFISVFKDFYGMTPLHYVSQH 247 ++ S+F + F+DFYG++P Y Q Sbjct: 1352 SNLSHFSNTFRDFYGISPSEYKEQQ 1376 >UniRef50_B4X435 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X435_9GAMM Length = 377 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%) Query: 160 HKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQS 219 H + N VA L +S S LK+ L ENT + ++T R AV L+ ++ +++ Sbjct: 289 HAEPNQESVAQALNMSRSTLKRHLARENTHFQAVLTNIRKENAVRLLLGTTHSLEHIAEQ 348 Query: 220 CGYNSTSYFISVFKDFYGMTP 240 GY+ + F F+ + GMTP Sbjct: 349 LGYSDQTNFSHAFRQWSGMTP 369 >UniRef50_B3CHJ1 Sensor protein n=2 Tax=Bacteroides RepID=B3CHJ1_9BACE Length = 1369 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 4/100 (4%) Query: 148 SDSVYQIIESDIHKDWNLSMVASC--LCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVN 204 S +Y+IIE +I D NL + C + +S + L +K+K+ S +++I R+ A+ Sbjct: 1261 SQKLYEIIEKNI-SDQNLGIEMLCDQIGISRANLYRKIKAISELSPTELIRNKRLEVALR 1319 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 L ++S+V+ G+NS SYF + FK FYG TP +V Sbjct: 1320 YLKETNMSVSEVATLLGFNSHSYFSNSFKAFYGFTPTEFV 1359 >UniRef50_B6EKX1 HTH-type transcriptional regulator, AraC family n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKX1_ALISL Length = 259 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 4/128 (3%) Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 TR + L L + ++ ++ ++ VY+++E D + V S L +S + Sbjct: 125 TRHMWLDGLYLLLAEEYYLQVLFLSSEGSFNEKVYEVLEKMQPSDHKIENVCSILGVSKA 184 Query: 178 LLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNI--SQVSQSCGYNSTSYFISVFKDF 235 L ++LK T + +I+ RM A+ +M + + +S SCGY S + FK+ Sbjct: 185 TLIRRLKKAGTQFKKIVRQVRMNKAL--FLMQKRELLLEDISFSCGYQSVELLVVYFKEE 242 Query: 236 YGMTPLHY 243 +G+TP Y Sbjct: 243 FGITPKEY 250 >UniRef50_A9KKW7 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KKW7_CLOPH Length = 294 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 2/125 (1%) Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 L +++R LDS + + N DS+ I ++ D ++ ++ L LS S L Sbjct: 156 LMILMNRMLDSAPLIETQTSIQSNKHVDSLISYISENLSGDLSIEALSKALYLSSSYLMH 215 Query: 182 KLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K K TS IT R+ A+ ELM +G I+ S GY+ S F+ F+ Y TP Sbjct: 216 KFKEVTGTSLHNYITKKRLTNAL-ELMREGTPITTASLQSGYSDYSTFLRTFRKVYHCTP 274 Query: 241 LHYVS 245 YV+ Sbjct: 275 TEYVT 279 >UniRef50_D1PXP0 Sensor protein n=2 Tax=Prevotella RepID=D1PXP0_9BACT Length = 1362 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 162 DWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSC 220 D+N+ M+ + + +S + L +K+K S I R++ A + +N++Q++ + Sbjct: 1264 DFNVEMLMAEVGISRTQLHRKMKEITGISAGGFIRNIRLQQAARLIKEKKQNVTQIAYAV 1323 Query: 221 GYNSTSYFISVFKDFYGMTPLHYVSQ 246 G+NS ++F S FK +GMTP Y +Q Sbjct: 1324 GFNSQTHFSSAFKKHFGMTPSEYANQ 1349 >UniRef50_Q5WIZ4 Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIZ4_BACSK Length = 283 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 155 IESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNI 213 I++ +H++ +L M+A+ C+ PS KK K+ +Y + + + R+ A + L +I Sbjct: 190 IDAHLHEELDLKMLAAHACVHPSYFSKKFKASIGLTYIEFLKSKRLVKAKDLLKTTDLSI 249 Query: 214 SQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 ++++CGY+S +F F+ G TP Y Sbjct: 250 QAIAEACGYHSMPHFYRTFRAATGTTPAAY 279 >UniRef50_Q480T9 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480T9_COLP3 Length = 331 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 48/88 (54%) Query: 156 ESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQ 215 ESDI + ++A L +S L+++LK E TSY I R A++ L+M +NI+ Sbjct: 239 ESDILFCPSFEILALSLNMSAQTLRRRLKVEGTSYPMIKDEIRRDLAIDYLVMTNRNITD 298 Query: 216 VSQSCGYNSTSYFISVFKDFYGMTPLHY 243 +S + G++ F FK + G++P Y Sbjct: 299 ISTALGFSEPRSFTRAFKQWTGVSPSKY 326 >UniRef50_A6DLX0 Transcriptional regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DLX0_9BACT Length = 282 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 168 VASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTS 226 VA+ L+P+ + KS+ S+S +TT R+ A L +NI ++++ CGY+ TS Sbjct: 197 VATNFKLTPNYISHLFKSQTGMSFSHHLTTIRINQACYLLKKFNQNIDEIARVCGYHETS 256 Query: 227 YFISVFKDFYGMTPLHYVSQHRERT 251 YF VFK G TP Y +H R+ Sbjct: 257 YFCRVFKKIKGHTPSAYRLKHSVRS 281 >UniRef50_A3UQ73 Helix-turn-helix, Fis-type protein n=3 Tax=Vibrionaceae RepID=A3UQ73_VIBSP Length = 339 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 45/80 (56%) Query: 161 KDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSC 220 KD NL VA+ L +SP L +KLK + S+ ++ R+ ++ L + NI+ V+ Sbjct: 255 KDTNLDSVANNLHISPRTLNRKLKQQGVSFRRLFDKYRLELSMTLLNQNDGNITYVAHEL 314 Query: 221 GYNSTSYFISVFKDFYGMTP 240 G++ +S F FK++ G +P Sbjct: 315 GFSDSSAFSRAFKNWTGHSP 334 >UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MCG4_VIBVY Length = 268 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 51/114 (44%) Query: 130 LDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTS 189 L + + LM + + I KD + +S + L ++LK E T Sbjct: 149 LAERGVLHLMFTPQGQSFEQKLSEFIAQQPSKDHQIEDACQHFAISKATLIRRLKEEGTQ 208 Query: 190 YSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 Y ++++ R+ +A+N + + +++S CGY S F F+ +G++P Y Sbjct: 209 YREVLSKVRLSHALNLMQQGHRKTAELSLMCGYQSPDKFSQRFRQRFGLSPREY 262 >UniRef50_A9KKI7 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KKI7_CLOPH Length = 355 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 155 IESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNI 213 +E ++D L+ +A+ S + + K + +++Q T R+ A+ L GKNI Sbjct: 255 LEEHYNQDIMLTDLAARTGFSTNYFSQIFKEKMGKTFAQFRTEIRIHKAMELLNWSGKNI 314 Query: 214 SQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + ++ GYN ++YFI VFK+ G TP Y Sbjct: 315 TDIAMEVGYNDSTYFIRVFKEITGQTPSEY 344 >UniRef50_B8CYB7 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYB7_HALOH Length = 415 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 14/130 (10%) Query: 117 RTRALLFTVLSRFLD---SKKFVSL--MMYMLRNCVSDSVYQIIESDIHKDWNLSMVASC 171 R +L VL RF++ S K V +MY N + D+ HK +L+ VA Sbjct: 289 RLSEILVRVLDRFIECIFSIKNVRKKDLMYKAMNYIRDNY-------AHKSISLNEVADE 341 Query: 172 LCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFIS 230 + LS + K K E +Y++ + R+ A EL+ G +++ ++Q+ G+N SYF Sbjct: 342 VGLSAAYFSKLFKEELGLTYTEYLNKVRIE-ASKELLKQGCSLASIAQTVGFNDQSYFSK 400 Query: 231 VFKDFYGMTP 240 VFK G++P Sbjct: 401 VFKKMEGLSP 410 >UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=Alphaproteobacteria RepID=B6RAA0_9RHOB Length = 263 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDG 210 V +IE+D+ W + VAS +S + ++ L +++++ R+ + L Sbjct: 166 VRSLIETDLSYAWRATDVASHFAMSEATFRRWLAKSGHGFAKVLLHTRLEKGLTLLQSTH 225 Query: 211 KNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 + IS ++ CG+N+ S+F FK +G+ P Sbjct: 226 EPISNIALDCGFNTPSHFSEAFKKRFGIRP 255 >UniRef50_C6J5Q8 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J5Q8_9BACL Length = 276 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 155 IESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGK-N 212 +++ +H++ L +A SP+ L K E +S+++T RM A +L+ D K Sbjct: 183 MQARLHENLTLKNIAQQFAFSPNYLGHLFKEETGQGFSEMLTELRMERA-RKLLKDPKVK 241 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 I +V+ GY YF FK+ +GMTP+ + Sbjct: 242 IYEVAGQVGYRYIPYFSRQFKETFGMTPMEF 272 >UniRef50_UPI0001693CE5 response regulator receiver protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693CE5 Length = 425 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Query: 143 LRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRY 201 +R+ ++ +++E +I +D L VA L ++ S L + K E +++Q + +M Sbjct: 323 VRHQTVKTILELVEREIDQDLTLDTVADRLYVNASYLSRLFKQETGKTFTQHVLGRKMEQ 382 Query: 202 AVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 A +M+G + + + GY SYFI VF+ ++G TP Sbjct: 383 A-RMCLMEGCQVQETAYQLGYKDVSYFIKVFRKYWGTTP 420 >UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=Pectobacterium RepID=D0KCL6_PECWW Length = 288 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 50/94 (53%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 VS + +I + + W L +S + L+++L +E T + ++ RM++A+ + Sbjct: 191 VSTQLRALISEEPERHWTAQSAGRLLAMSEATLRRRLSAEQTRFEVLLLETRMQHAMMLV 250 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 ++ +++++CGY S++ F FK +G +P Sbjct: 251 QTTSWSMQRLAEACGYKSSARFSERFKTRFGCSP 284 >UniRef50_UPI0001788EC5 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788EC5 Length = 524 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENT-SYSQIITTCRMRYAVNELM 207 + + + I++ +H++ L +A+ SP+ L K E ++S + RM A + L Sbjct: 424 EEIIENIQARMHENITLRDMANRFSFSPNYLGVLFKEETGHNFSDYVIKLRMERARDLLK 483 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 I +++ GY YF FK+ YGMTPL Y +H Sbjct: 484 TTKLKIYEIASQTGYQYLPYFSRQFKEMYGMTPLEYRRKH 523 >UniRef50_C7II19 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7II19_9CLOT Length = 279 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 1/104 (0%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNE 205 V D + + IES+ D +L ++ + L+ + + LK S ++ +IIT RM A Sbjct: 164 VVDKIMKYIESNYMNDISLITLSEEIHLNSIYISRILKRSTGYTFLEIITAVRMVKAAEL 223 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 L G I+QVS+S G N YF VFK + +TP + + + E Sbjct: 224 LRNSGFTIAQVSESVGINDQRYFSQVFKKIFNLTPREFRNLNNE 267 >UniRef50_C5BJX6 Transcriptional regulator, AraC family n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJX6_TERTT Length = 335 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 +LS A + +S + LK++L+SE S+ QI R A+ +L++ G ++ +V ++ Sbjct: 244 SLSECAQQMGISAATLKRRLQSEKVSFQQISDNLRAERAMIDLLLSGASVEEVGARLNFH 303 Query: 224 STSYFISVFKDFYGMTPLHYVSQHRE 249 +S F FK + GMTP + +RE Sbjct: 304 DSSNFRRAFKRWTGMTPSDLRAVYRE 329 >UniRef50_A7AG56 Sensor protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AG56_9PORP Length = 1346 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 2/101 (1%) Query: 151 VYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMM 208 ++ +IE ++ + N+ ++ + + + +KLK+ + S +I R+ A L+ Sbjct: 1241 LFGVIEQNLSNPGLNVEILCKGVGMGRANFYRKLKAITDLSPVDLIRNKRLEIAARMLLE 1300 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 NIS+VS + G+NS +YF + FK YGM+P YV Q+++ Sbjct: 1301 TDMNISEVSANIGFNSHAYFATCFKAMYGMSPTEYVQQNKK 1341 >UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC3_DESAD Length = 293 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 2/114 (1%) Query: 134 KFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQ 192 +FVS ++ RN + ++E +K+ +L VA S S K++ K NT+ ++ Sbjct: 173 EFVSFLV-ACRNSSRGDLSAVMERYFNKNISLETVAELSGRSLSSFKREFKKTFNTTPAR 231 Query: 193 IITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 I RM +A L K+I+++S GY S S+F ++F+ YG+TP Y ++ Sbjct: 232 WIRERRMSWAEQLLRNSAKSITEISYESGYESLSHFSTLFRKNYGVTPREYRAE 285 >UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clostridium RepID=A0Q2M6_CLONN Length = 246 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 3/108 (2%) Query: 144 RNCVSD--SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMR 200 +NC + V + I+ + D L VA + S S L K K E ++++ IT R+ Sbjct: 138 KNCTEEFQEVVEYIDKNFKNDITLKDVADHVNFSSSYLSKLFKKEMGINFNRYITKIRID 197 Query: 201 YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 A L+ +I++++ S GYN +YF VFK MTP Y + R Sbjct: 198 KAKEILINSNISINEIAFSVGYNEPNYFCKVFKKIVNMTPSEYRTNSR 245 >UniRef50_UPI0001C35A14 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35A14 Length = 527 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 153 QIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDG 210 ++IE + + D L +AS L +SP+ L + K + S Q IT CRM +A + L Sbjct: 433 ELIEQEYSRTDMGLQYIASVLLISPAYLSRNFKRIKQYSVMQYITKCRMEHAWDLLSGGR 492 Query: 211 KNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 +I+ ++ GY YF FK ++G++P Sbjct: 493 LSIAAAAEKTGYQDAFYFSKCFKRYFGISP 522 >UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=Vibrio cholerae RepID=TCPN_VIBC3 Length = 276 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Query: 154 IIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGK-N 212 +++SDI ++W + + L + +LKK+L+S + ++I + R+ Y+++ LM G+ Sbjct: 177 LVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSIS-LMKTGEFK 235 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 I Q++ G+ S SYF +VFK + P Y+ Sbjct: 236 IKQIAYQSGFASVSYFSTVFKSTMNVAPSEYL 267 >UniRef50_D1NBY5 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBY5_9BACT Length = 284 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMD 209 + Q I ++ +K L M+A L LS S + LK + ++++ R+ YA+N L Sbjct: 182 IEQFISTNFNKGITLGMLAEFLNLSESRTSRLLKEYFDAGLTELVNRQRLNYAINTLQRA 241 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + +Q G+ S YF +F+ GMTP Y +H+ Sbjct: 242 EVSARIAAQRAGFGSVEYFHRLFRRETGMTPQEYRKRHQ 280 >UniRef50_A4CH99 Transcriptional regulator n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CH99_9FLAO Length = 373 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 2/104 (1%) Query: 146 CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENT-SYSQIITTCRMRYAVN 204 V D QI E + D++L ++ LS L++ KS T + + + R+ A N Sbjct: 266 IVRDIARQISE-QVAGDYSLPALSKATGLSQYKLQEGFKSLYTRTVADYVRHVRLETARN 324 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 L NIS+V S G+NS SYF ++FK YG++P ++S+ R Sbjct: 325 LLRKTDMNISEVVYSVGFNSRSYFSNIFKKQYGLSPSDFISKLR 368 >UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY72_9BACL Length = 413 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 164 NLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGY 222 L +A L SP+ L + +K E T+++ +T R+R A L+ I+++++ GY Sbjct: 320 TLEAMAQALQTSPAYLSRMIKQELGTTFNSYLTQLRIRRASRLLIATELTIAEIAEQVGY 379 Query: 223 NSTSYFISVFKDFYGMTPLHY 243 + YF + FK G++PL Y Sbjct: 380 ETQHYFSTAFKRATGLSPLQY 400 >UniRef50_C5RE27 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RE27_CLOCL Length = 820 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSEN-TSYSQIITTCRMRYAVNELMMD 209 + + IE + + N++ +A L L+ + K S Q IT RM A L+ + Sbjct: 179 IIEYIEQNYMNEININTLAEILHLNKYYIAHFFKKHTGLSLGQYITNLRMNKATELLIKN 238 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERT 251 +I+ + SCG+ + YF VF++ Y +PL Y + +ER+ Sbjct: 239 EDSITNIILSCGFKNIKYFYKVFREVYKCSPLEYKNNRQERS 280 >UniRef50_Q1QBF2 Transcriptional regulator, AraC family n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QBF2_PSYCK Length = 267 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMD 209 V Q + ++ + N++ +A S S L++ K+ N S Q + R+ YAV L M Sbjct: 168 VAQFVRGNLDQKINIAELAELSHFSLSQLERTFKAVLNMSPLQFVQKLRLEYAVKLLAMP 227 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 +++Q+S +CGY+ S F FK F G++P + H Sbjct: 228 EMSVTQISLNCGYSDHSAFSRQFKQFTGLSPSQFRQTH 265 >UniRef50_C3HF38 Putative uncharacterized protein n=1 Tax=Bacillus thuringiensis serovar pulsiensis BGSC 4CC1 RepID=C3HF38_BACTU Length = 312 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 1/102 (0%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELM 207 + + +I H + +A +S S ++ K+ S Q I R+ YA L+ Sbjct: 206 EGILDVIHQQFHLPIQVQHLAEMANMSESSMQSYFKASLGMSVYQYIQRKRVEYAAELLI 265 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 ++I+++S GY++ S F +FK YG TPLHY ++ E Sbjct: 266 HTNESITEISMQVGYDNPSKFAKIFKRIYGETPLHYRKKYTE 307 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 1/104 (0%) Query: 145 NCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAV 203 N + + Q +E H + +L +A LS + +K K E + S + R+ A Sbjct: 433 NHIIHDIAQYLEQHYHDEISLQQIAGKFFLSREYISRKFKQEFGVTLSDFLGRIRIEKAK 492 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 L+ I+Q+++ GY YF VFK G TP Y +H Sbjct: 493 TLLLNPQIRIAQIAEMVGYQDEKYFSKVFKKMEGFTPNEYRKKH 536 >UniRef50_A4A3Z8 Transcriptional regulator (AraC family protein) n=3 Tax=unclassified Gammaproteobacteria RepID=A4A3Z8_9GAMM Length = 356 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 43/80 (53%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 L VA+ L L P L+++L +E ++ QI + R A++ L ++ +V+ G++ Sbjct: 273 ELPDVAAALDLHPQTLRRRLAAEGNTFKQIKSDIRRDTALHFLGKRSLSVEEVAHRAGFS 332 Query: 224 STSYFISVFKDFYGMTPLHY 243 S FI FK + G+TP Y Sbjct: 333 EASAFIRAFKAWTGLTPYAY 352 >UniRef50_C0D1T3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D1T3_9CLOT Length = 361 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 144 RNC---VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRM 199 R+C + ++ +I + ++ L +A L +SP+ L + K E T + + + RM Sbjct: 253 RSCSALIKSALEEIDRNYFRSEFTLQTLAETLMVSPNYLSARFKEETGTGFVRFLNEKRM 312 Query: 200 RYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 A L + I +V+ CG YF +FK++ GMTP Y Sbjct: 313 ERAKGLLADVSRKIYEVACQCGIEDVRYFTRLFKEYAGMTPKEY 356 >UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=Xanthomonadaceae RepID=B4SIX4_STRM5 Length = 274 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 45/94 (47%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 + + + I ++ +DW V LS + L+++L +E TS Q++T R+ + + L Sbjct: 178 LGEQIRDRIAAEPARDWQSRDVEEQFALSGATLRRRLAAERTSLRQLLTEARLAHGMTLL 237 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 + V+ GY S + F F + YG+ P Sbjct: 238 YTTDLPLKTVAARAGYRSAASFSKRFAEQYGLAP 271 >UniRef50_C3QVG6 Two-component system sensor histidine kinase/response regulator n=3 Tax=Bacteroides RepID=C3QVG6_9BACE Length = 944 Score = 52.4 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 62/106 (58%), Gaps = 3/106 (2%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNE 205 +S + ++ E+ ++N+ +A+ + +S S L +K+K+ + S I R++ A E Sbjct: 836 MSQLIAKVRENLSDANYNVEALAAAMNMSRSSLHRKIKALTDLSSLDFIRIIRLKRAA-E 894 Query: 206 LMMDGK-NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 L+ +G+ I+++S G+ S SYF +F+ +G+TP + Q+++R Sbjct: 895 LLQEGELRINEISDRVGFQSPSYFAKIFQKQFGVTPTEFAQQNKQR 940 >UniRef50_UPI0001C35655 two-component response regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35655 Length = 269 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Query: 145 NCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAV 203 N + + I S + +L+ ++ L +S + L K E NT+ + +T RM+ A Sbjct: 163 NLLISQAVEYIGSHLAGAASLNDISGALHVSKAYLSTLFKREMNTTVTDFVTKQRMKEAK 222 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 L+ +S++ GY S YFI VFK+ G+TPL Y Sbjct: 223 KLLLETDMLVSEIYLKVGYQSDKYFIKVFKELEGITPLAY 262 >UniRef50_C5RJF8 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJF8_CLOCL Length = 305 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Query: 133 KKFVSLMMYMLRNCVSDSVYQI---IESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NT 188 ++F+S+ + NC + + +I I+ + +KD L M+A + + L K K+ N Sbjct: 182 EEFMSMSEVIENNCSDNIMKRIVNYIDRNYYKDIKLEMLAEIFNYNSAYLGKMFKNHTNE 241 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 S++ + R+ A L D + QVS+ GY + YF S FK + GM+P Y Sbjct: 242 SFNSYLDKIRIENAKKLLTNDSLKVYQVSEKVGYKNIDYFYSKFKRYVGMSPKEY 296 >UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marinobacter algicola DG893 RepID=A6EZ51_9ALTE Length = 334 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIES-DIHKDWNLSMVASCLCLSPSLLKKKLK 184 L RF++ L+ + ++ V QI+E+ D + L +A L ++ L +KLK Sbjct: 211 LDRFIEKSPRNLLIWTDEDDSLTTRVRQILENVDDERLPTLEQIAGQLHMTAYTLSRKLK 270 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 +E +SY +I R AV L +S++S G+ F FK + G++PL Y Sbjct: 271 AEGSSYQKIKDNLRRDQAVIMLTRQNLTVSEISSQLGFTEPGAFSRAFKHWTGLSPLAYR 330 Query: 245 SQ 246 Q Sbjct: 331 KQ 332 >UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2Y7_9BACL Length = 118 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 164 NLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGY 222 L M+A + P+ K+ K + S+ + + RM+ A L I ++S+ G+ Sbjct: 31 QLQMIAERFFIHPNYFSKRFKEKYGESFVDYLNSIRMKEAAALLGETNLKIREISERVGF 90 Query: 223 NSTSYFISVFKDFYGMTPLHYVSQHRERTV 252 +YF SVF+ +YG TP Q+RER + Sbjct: 91 EDAAYFSSVFRKWYGETP----KQYRERQL 116 >UniRef50_C1P7P5 Transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1P7P5_BACCO Length = 292 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 153 QIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGK 211 Q I+ IH+ L VA + LSP K K E ++ + +M A + L D Sbjct: 193 QYIQKHIHQPVTLEEVAGHVYLSPYYFSKLFKKETGETFVSFVNRQKMNLAKDMLANDDL 252 Query: 212 NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 +S ++ S G+ SYF VFK +Y TP Y + R++ Sbjct: 253 PVSYIAHSLGFREISYFSKVFKRYYQTTPTSYRAMSRKK 291 >UniRef50_C6D226 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D226_PAESJ Length = 537 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 143 LRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRY 201 +R+ + + + + I+ +I KD L VA + L P + K E ++S + RM Sbjct: 433 IRSDLMERIRRFIQENI-KDITLQTVADHVNLHPVYVSNLFKQETKENFSNYVLRLRMER 491 Query: 202 AVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 AV L ISQ++ GY YFI +FK YGMTP + Sbjct: 492 AVQLLKNKDLRISQIALEVGYQKPQYFIKLFKTQYGMTPQEF 533 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 155 IESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNI 213 I + + +L MVA + +SP+ KK K + + +T R+ A L N+ Sbjct: 182 ISTHFQEPVSLHMVADYVHMSPTYYSKKFKQITGVGFKEYLTKTRLYEATELLTHTSLNV 241 Query: 214 SQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 ++++ CG+N +YF F+ +G++PL Y Sbjct: 242 TEIAIRCGFNDGNYFGDAFRKEFGLSPLQY 271 >UniRef50_C7PMQ7 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PMQ7_CHIPD Length = 331 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 40/80 (50%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 +LS +A+ +SP L++KLK E SY + R A++ L + +S GYN Sbjct: 249 SLSEIAANFNVSPRTLQRKLKEEGISYQDVADEVRKSLAIHYLEEGDYPVKTISYMLGYN 308 Query: 224 STSYFISVFKDFYGMTPLHY 243 S F FK + G TP+ Y Sbjct: 309 ELSAFTRAFKRWTGKTPVSY 328 >UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein n=10 Tax=Acinetobacter RepID=B2HXY7_ACIBC Length = 344 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 44/79 (55%) Query: 168 VASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 VA + +S L++ L ENTS+S ++ R +YA + L +I V+ S GY T + Sbjct: 256 VAQMMNMSERSLQRYLAIENTSFSALVDLTRKQYAQDLLQNSSMSIEAVALSLGYADTPH 315 Query: 228 FISVFKDFYGMTPLHYVSQ 246 F FK + G+TP +Y +Q Sbjct: 316 FTRAFKRWMGVTPKYYQTQ 334 >UniRef50_C6CT15 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT15_PAESJ Length = 520 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 6/103 (5%) Query: 145 NCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAV 203 N V ++V Q+I+ D KD L+ ++ + L+PS L K E + +Q + RM A Sbjct: 417 NRVIETVKQLIQQDYDKDLELTELSEKVFLNPSYLSTLFKQETGLTITQYVLQLRMMKA- 475 Query: 204 NELM---MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 EL+ +D K + +V + GY + YF VFK G+TP Y Sbjct: 476 KELLKKRLDLK-VYEVGEQVGYPDSIYFNKVFKKMVGITPKEY 517 >UniRef50_A9G936 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G936_SORC5 Length = 352 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 43/84 (51%) Query: 160 HKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQS 219 H + L +A+ L +SP L+++LK E TS S ++ R A L IS+++ Sbjct: 245 HGEPALPAIAARLRMSPRSLQRRLKEEGTSLSSLLDALRADLAARYLSESRDAISEIAFL 304 Query: 220 CGYNSTSYFISVFKDFYGMTPLHY 243 G++ S F FK + G+TP Y Sbjct: 305 LGFSEVSTFHRAFKRWTGVTPAAY 328 >UniRef50_A9E8H7 Transcriptional regulator n=1 Tax=Kordia algicida OT-1 RepID=A9E8H7_9FLAO Length = 347 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Query: 153 QIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGK 211 +II+++I N++++A + ++P+ L+ K +S ++ I R+ A L Sbjct: 246 EIIKNEIASVENVTVLAKRVGVNPNTLQNGFKYLYKSSVNEFIKNHRIEKAKELLETSDL 305 Query: 212 NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA 253 NIS+++ G NS SYF +FK YG++P Y+ + RE A Sbjct: 306 NISEITYKIGINSRSYFSKIFKQRYGISPNAYLKKSREDKSA 347 >UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT67_9GAMM Length = 358 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 43/84 (51%) Query: 164 NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 L VA L ++ L ++L+ E TS+ QI CR A+ L S++S+ G++ Sbjct: 271 GLQEVAERLYMTTPTLHRRLREEQTSFQQIKDHCRRDAAIGYLSSAQYTTSELSELMGFS 330 Query: 224 STSYFISVFKDFYGMTPLHYVSQH 247 +S F FK + G+TP Y +H Sbjct: 331 DSSTFHRAFKKWTGLTPQDYRKKH 354 >UniRef50_A6GMI7 Putative transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GMI7_9BURK Length = 340 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 60/118 (50%) Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE 186 +RF +++ L M R VS + + +D+ +L+ +A+ ++ L+++L E Sbjct: 213 ARFCETQLENLLSRRMQRGGVSAWLRNKLLADLSSSPSLAQIATDHFMTERTLRRRLTDE 272 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 TSY ++ R A L G ++S+VS GY+S S FI F+ ++ +P ++ Sbjct: 273 GTSYRDLLAEVRQTMAEELLSSTGLSVSEVSARLGYSSPSAFIHAFQKWHNCSPRQFL 330 >UniRef50_C0WDW3 Predicted protein n=2 Tax=Acidaminococcus sp. D21 RepID=C0WDW3_9FIRM Length = 311 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 5/105 (4%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYS-----QIITTCR 198 +N ++ I S I ++ S+ S L + L K KL + Y+ + T R Sbjct: 190 KNTEERVLFDGILSFIKDHFSESLTISQLSTAAHLNKNKLTALFQKYTGMPPIHFLNTYR 249 Query: 199 MRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + A +L+ +++S++S+ GY S+FI F+ YGMTPL Y Sbjct: 250 LDEARTQLLKSARSVSEISEDVGYGQISHFIQQFRKRYGMTPLQY 294 >UniRef50_A5VW33 Transcriptional regulator, AraC family n=36 Tax=Brucella RepID=A5VW33_BRUO2 Length = 259 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELM 207 + + + I +++ +D + ++A + +S S ++++ K T+ I R+ A L Sbjct: 150 ERIREFIMANLDRDLTIDLIAQKVAISASTVQRRFKKHYGTTLYNFIKQQRLEAACVALS 209 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 D ISQ + GYN+TS F S F+ YG +P Sbjct: 210 RDSIPISQAAHLAGYNNTSTFTSAFRKLYGFSP 242 >UniRef50_A4VH68 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VH68_PSEU5 Length = 346 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Query: 144 RNCVSDSVYQ-IIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYA 202 +N V SV Q IIE D VA+ LC+SP+ L+ KL +T + Q++ R A Sbjct: 242 KNDVITSVKQKIIEFLPDGDCTRDKVANALCMSPTTLQLKLSQRSTHFQQLLDETRKDLA 301 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 + L + +++++ G++ TS F FK + G++P ++ Q Sbjct: 302 CSYLRQVTRPVTEITFLLGFSDTSNFTRAFKRWTGLSPTNFRQQ 345 >UniRef50_C6D094 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D094_PAESJ Length = 289 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK-LKSENTSYSQIITTCRMRYAVNELM 207 + + Q +ES ++ + +A +SPS L+K LK Q + R R A + L+ Sbjct: 177 EKIKQTLESSYKENLRIEQLAKTYSISPSYLRKVFLKHTGMGPKQYLDHIRNRQACDYLV 236 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 I+QV++ CGY +F +FK GM+P HY Sbjct: 237 FTDYPINQVAKLCGYYEEYHFSKMFKQHNGMSPSHY 272 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 49/104 (47%) Query: 145 NCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVN 204 + + V +I+ + K + VA L + L+++L E+T+Y Q++ RM A + Sbjct: 237 DGIEGEVRRILANQPGKYPGIIEVARALAMGERTLRRRLADEDTTYKQVVLEFRMELAAS 296 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 L + +I +++ GY S F F G+TP Y H+ Sbjct: 297 YLRGNAMSIQEIAYVTGYADPSNFHRTFNKHQGLTPNAYRRLHQ 340 >UniRef50_UPI0001C358FB two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C358FB Length = 273 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 3/135 (2%) Query: 112 ESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNC--VSDSVYQIIESDIHKDWNLSMVA 169 +S+K R + L R L ++ M C V +E H+D +L ++ Sbjct: 127 QSQKHRKKVQLMETEIRKLKAEHLTDDMPVDSNGCSRVIRKALNYMEDHYHEDISLESIS 186 Query: 170 SCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYF 228 + L+ + + K E S+ Q +T R+ A L + G S+V+ G+ + SYF Sbjct: 187 EVVFLNKNYFSELFKKETGKSFVQYLTEYRLEKAKLLLAISGFKGSEVADMTGFQNNSYF 246 Query: 229 ISVFKDFYGMTPLHY 243 ISVFK + G TP Y Sbjct: 247 ISVFKKYVGCTPKEY 261 >UniRef50_B1HXY4 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=B1HXY4_LYSSC Length = 232 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 8/94 (8%) Query: 155 IESDIHKDWNLSMVASCLCLSPSLLKKK-LKSENTSYSQIITTCRMRYAVNELMMDGKNI 213 I + H+ +L+++A + L+PS L +K L+ ++ ++ I R+ AV ++ G+N+ Sbjct: 133 IHENYHEKLSLNIIAEKIHLNPSYLSRKFLEEQSIGINEYINNYRLEMAVKKI---GENL 189 Query: 214 ----SQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 S +++SCG+NS YF FK Y +P Y Sbjct: 190 DASMSAIAESCGFNSQHYFSVAFKKKYNQSPRQY 223 >UniRef50_UPI0001C362BB response regulator receiver protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C362BB Length = 482 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSENTSYSQIITTCRMRYA 202 R+ + D+V + I++ +D NL+++A+ LSP+ L +K ++ S + R+ A Sbjct: 375 RSEIVDNVIRYIKNHYKEDINLNVLANEFFLSPAYLSRKFSQTTGVSIMSYLEDYRINVA 434 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + L ++IS+++ GY +YF +FK G+TP + Sbjct: 435 TDLLKGSERSISEIADQVGYYDANYFTKIFKKVKGITPKEF 475 >UniRef50_A7K455 Signal transduction histidine kinase n=5 Tax=Vibrio RepID=A7K455_VIBSE Length = 1125 Score = 51.6 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 4/104 (3%) Query: 151 VYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKSENT-SYSQIITTCRMRYAVNELMM 208 VYQ++ H ++ ++ A L +S L+++ KS ++ + +T R+ A +L+ Sbjct: 1022 VYQLVAEHYHDPEFGTALAAKMLFMSERSLQRRFKSASSRTLKDYVTEVRLETACEQLLA 1081 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY-VSQHRERT 251 G+ IS+V+ +CG+N SYF FK +G+ P + ++Q + T Sbjct: 1082 -GEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFALTQESQET 1124 >UniRef50_UPI0001C36481 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36481 Length = 293 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 1/110 (0%) Query: 142 MLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMR 200 MLR + + Q I + + L +A + S L + K N + ++ I R+ Sbjct: 175 MLRYAKAREIIQYIMEHYSEVYGLEDLAGIFYMDKSYLSRIFKEVTNFTVNEFINCQRIG 234 Query: 201 YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 +A + L+ + ++ ++SQ GY SYF VFK + GM+PL Y R++ Sbjct: 235 HARDMLLDESLSMEEISQKLGYERLSYFDRVFKKYVGMSPLQYRKSKRKK 284 >UniRef50_A6KXP0 Two-component system response regulator n=6 Tax=Bacteroides RepID=A6KXP0_BACV8 Length = 939 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 70/130 (53%), Gaps = 14/130 (10%) Query: 129 FLDSK------KFVSLMMYMLRNCVSDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKK 181 +LDSK +FV L +L V + +E ++ D++++ +A + +S S L + Sbjct: 815 YLDSKVNLPEPEFVQLDKLLLEKAV-----KAVEDNLTEPDFDVTALADAMNMSRSTLTR 869 Query: 182 KLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 KLK+ + I +M++A + L K++++V+ + GY + YF + FK+ +GMTP Sbjct: 870 KLKAITGRTPLDFIRNIKMKHARHMLEDKDKSVTEVAATLGYFNRKYFTTCFKEEFGMTP 929 Query: 241 LHYV-SQHRE 249 + SQH E Sbjct: 930 SEFQKSQHEE 939 >UniRef50_C2G180 AraC family transcriptional regulator n=2 Tax=Sphingobacterium spiritivorum RepID=C2G180_9SPHI Length = 297 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 14/151 (9%) Query: 96 DVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDS-KKFVSLMMYMLRNCVSDSVYQ- 153 D+ RV A H+++PA +S+ +LS +D ++ V LR + + + Sbjct: 132 DLIRVQATHTLLPAFYKSKS-------LYILSSLMDGIQRMVLSKPAELRETDIEKIKKV 184 Query: 154 --IIESDIHKDWNLSMVASCLCLSPSLLKKKLKS--ENTSYSQIITTCRMRYAVNELMMD 209 IIE++++K++ + +A + + LK+ K T +S I+ C+M+ A + L Sbjct: 185 KYIIETNLNKNFTIQHLAREVGTNVQYLKQHFKQYYGKTIFS-FISECKMQKAQHLLKER 243 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 IS +S GY S+F + FK F+G P Sbjct: 244 ELTISFISHQLGYKHASHFTNAFKKFFGYVP 274 >UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6Q9_9SPHI Length = 918 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 13/122 (10%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 +SR +D KKFV+ + N +S+ +D N+ +A L LS L +K+K+ Sbjct: 808 ISRSID-KKFVNDFAGFIENNLSN-----------EDLNVDKIAKELGLSRVQLYRKIKA 855 Query: 186 -ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + S+ I + R++ A LM + NIS+++ G+ S +YF +VFK YG++P + Sbjct: 856 LMGCTISEYILSRRLKKAKYLLMNERYNISEITYMVGFASATYFSTVFKTKYGVSPSEFK 915 Query: 245 SQ 246 Q Sbjct: 916 KQ 917 >UniRef50_B5FC35 Transcriptional regulator, AraC family n=2 Tax=Vibrio fischeri RepID=B5FC35_VIBFM Length = 1135 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 3/101 (2%) Query: 151 VYQIIESDIH-KDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMM 208 VYQ+IE + + S A L +S L++K K S+ + + R+ A EL++ Sbjct: 1036 VYQLIEDNYSLASFGTSAAAKALFISERNLQRKFKQLTQRSFMEYLIDTRLEKAC-ELLI 1094 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 G+ ++ + G+N SYF FK YG++P +V+++ E Sbjct: 1095 SGQKVADAAFESGFNDPSYFSKRFKRHYGLSPTQFVTENEE 1135 >UniRef50_C8ZXM2 DNA binding response regulator n=4 Tax=Enterococcus RepID=C8ZXM2_ENTGA Length = 495 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Query: 154 IIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENT-SYSQIITTCRMRYAVNELMMDGKN 212 +IE ++ + A L +S L + K E S++Q + R++ A L+ G+ Sbjct: 393 MIEEHYTQELTVKSAAEALHVSVVYLGQVFKKETELSFNQYVNFIRIKKAQQLLLHTGQT 452 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 I++++ + GYN+T+YF +FK G+TP + ++ + Sbjct: 453 INEIADAIGYNNTNYFSKMFKKLNGLTPKEFREKYEQ 489 >UniRef50_A1A117 Transcriptional regulator, AraC family n=7 Tax=Bifidobacterium RepID=A1A117_BIFAA Length = 248 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 1/99 (1%) Query: 155 IESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNI 213 I +H+ + ++A + L+P+ L + K E T+ SQ IT RM A N L + Sbjct: 147 IHYHLHEKITVPILAEHVHLNPTYLSELFKRETGTAISQYITDKRMEAAENMLKYSEYSF 206 Query: 214 SQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTV 252 +++Q Y S S+F VFK GMTP Y +++ + + Sbjct: 207 DEIAQILAYRSQSHFSKVFKKHSGMTPGEYRTKYAQNGI 245 >UniRef50_A0AHT2 Complete genome n=15 Tax=Listeria RepID=A0AHT2_LISW6 Length = 183 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 155 IESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNI 213 I+ +IH+ L VA+ + LSP L K K+E N ++ + +M YA +L + Sbjct: 89 IKKNIHRSITLEEVANYVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAV 148 Query: 214 SQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 ++++ G++ SYF VFK + MTP Y Sbjct: 149 HTIAKNLGFSRASYFCKVFKKQFDMTPKEY 178 >UniRef50_B0A945 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A945_9CLOT Length = 421 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 154 IIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKN 212 I + K+ + VA +CLS S L + + N + + IT R+ ++ + M + Sbjct: 326 FISDNYDKNITVEDVADSVCLSSSYLSHLFREKLNCTVNNYITRVRIEKSIELMSMRELS 385 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 I ++S+ G+NS SYF +FK + G+TP+ Y ++ + Sbjct: 386 IQEISEKVGFNSQSYFTKIFKRYIGVTPVIYRNKFK 421 >UniRef50_A7VU71 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VU71_9CLOT Length = 289 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 23/181 (12%) Query: 81 QRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMM 140 + A L P D+ RV + + EKE+ +AL ++ + R + KK+ S + Sbjct: 110 KEQAFDYLLKPTREEDIKRVFGR----ALKVLEEKEKNKAL-YSEMKRKI--KKYGSQIT 162 Query: 141 YMLRNCVSDSVYQIIESDIHK-----------DWNLSMVASCLCLSPSLLKKKLKSE-NT 188 + +DS +I + K + L ++S LSP L + K + Sbjct: 163 VKAQENSADSSSEIYTDTMDKVIKYVNENYTLEIGLQEISSKFFLSPDYLSTQFKVKTGK 222 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 ++ I+ R++ A LM IS+V++ GYN + YFI VFK+ G TP SQ R Sbjct: 223 NFKDYISNLRIQKAEELLMCSEFKISEVAELMGYNDSGYFIKVFKNKLGCTP----SQFR 278 Query: 249 E 249 E Sbjct: 279 E 279 >UniRef50_A5FBY5 Transcriptional regulator, AraC family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FBY5_FLAJ1 Length = 343 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 10/111 (9%) Query: 144 RNCVSDSVYQ-------IIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIIT 195 +N + D Y I+E D NL+ ++ + L+ LKK K+ T+ I Sbjct: 218 KNKIDDEDYSKLLEAKLILEKDYVHAPNLTELSRMISLNEFKLKKGFKACFGTTVKSFII 277 Query: 196 TCRMRYAVNELMMD-GKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 RM YA EL D +S+V+ CGY S+F + FK FYG +P + S Sbjct: 278 KLRMEYA-KELFKDKASTVSEVAYKCGYKDISHFSAAFKSFYGSSPQKFKS 327 >UniRef50_A8VRA2 Methyl-accepting chemotaxis sensory transducer n=2 Tax=Bacillus RepID=A8VRA2_9BACI Length = 262 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 168 VASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTS 226 VA+ + L+P+ L K + ++S+ +T R++YA + L+ ++ ++ GY + Sbjct: 178 VAATVHLNPNYLSAHFKEQVGMTFSEYLTRKRLQYAKSLLLNSSSTVADIADKSGYQTAK 237 Query: 227 YFISVFKDFYGMTPLHYVSQHR 248 YF+ +FK++ MTP + +R Sbjct: 238 YFVKIFKEYEKMTPSQFRKANR 259 >UniRef50_Q481H7 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q481H7_COLP3 Length = 344 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 47/91 (51%) Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMD 209 ++ Q I +++HKD +AS L L+P L++KL + TS+ I+ R A ++ Sbjct: 247 TINQWIAANMHKDLCAENLASDLYLTPRTLRRKLSEQGTSFRDIVKELRCSAAKKLIIET 306 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 I + + G+N S F + FK + G TP Sbjct: 307 QLTIEDIGCAIGFNDVSNFRAAFKKWTGQTP 337 >UniRef50_B9NP20 Transcriptional regulator, AraC family, putative n=2 Tax=Rhodobacteraceae RepID=B9NP20_9RHOB Length = 339 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 168 VASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 A+ L LSP L ++L SE TSY +I+ R A + +G N+S+VS GY+ + Sbjct: 254 AAAQLGLSPRTLSRRLTSEGTSYREIVEDLRCDLA-QTFIKNGMNLSEVSYVLGYSDQAA 312 Query: 228 FISVFKDFYGMTP 240 F + FK + G P Sbjct: 313 FSTAFKRWTGQAP 325 >UniRef50_B2TEU0 Transcriptional regulator, AraC family n=3 Tax=Burkholderiales RepID=B2TEU0_BURPP Length = 363 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 154 IIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKN 212 ++E ++ N++++A + S L++ SE N S ++ R+RYA L+ + Sbjct: 264 LMEENLEAPLNIAVIAKMIGTSVRNLERAFMSEMNASPNEFYRRMRLRYARWMLVNTARK 323 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTP 240 I+ ++ CG+ +++FI F++ YG+TP Sbjct: 324 ITDIAYECGFADSAHFIRAFREAYGVTP 351 >UniRef50_D2YK24 Type 4 prepilin-like protein leader peptide-processing enzyme n=1 Tax=Vibrio mimicus VM573 RepID=D2YK24_VIBMI Length = 533 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 51/91 (56%) Query: 154 IIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNI 213 +++SDI ++W + + L + +LKK+L+S + ++I + R+ Y+++ + I Sbjct: 177 LVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKI 236 Query: 214 SQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 Q++ G+ S SYF +VFK + P Y+ Sbjct: 237 KQIAYQSGFASVSYFSTVFKSTMNVAPSEYL 267 >UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAS3_9FIRM Length = 271 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%) Query: 144 RNC-VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRY 201 RN V D V + +E + D +L V+ L +SP+ L + K + ++ +T R+ Sbjct: 157 RNALVMDHVRKYMEDNYMADLSLDSVSEILHISPAYLSAQFKKYQKMNFLDCLTELRIN- 215 Query: 202 AVNELMMDG-KNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 A EL+ D ++ ++V+ GY SYF FK GMTP Y Sbjct: 216 AAKELLADPFRSAAEVASMVGYEDASYFARAFKKRTGMTPTQY 258 >UniRef50_D2QDL2 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QDL2_9SPHI Length = 1349 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 2/101 (1%) Query: 149 DSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNEL 206 + V+ +I ++ + D ++ M+A + +S L +KLK N++ +I R++ A + L Sbjct: 1245 EKVHALINKNLSNPDLSVEMIAGEIGISRVHLHRKLKELTNSTTRDLIRHIRLKQAADLL 1304 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 G +S+V+ + G+ + + F FK+ YG++P HY Q Sbjct: 1305 TTKGLTVSEVAFATGFANVNNFSVSFKELYGVSPAHYAEQQ 1345 >UniRef50_B2U5Z6 Transcriptional regulator, AraC family protein n=9 Tax=Enterobacteriaceae RepID=B2U5Z6_ECOLX Length = 294 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 6/136 (4%) Query: 111 TESEKERTRALLFTVLSRFLDS-----KKFVSLMMYMLRNC-VSDSVYQIIESDIHKDWN 164 T+++K T A+ V S +L S K V L+++ VS+ + +I+ ++ ++W+ Sbjct: 150 TDNKKTETDAIYDKVRSSYLLSCILKKNKNVGLILHAPSFVSVSEKIARIVMANYSRNWS 209 Query: 165 LSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNS 224 S +AS + +S S LK+++ E S S + ++ A+ +L IS +S GY+S Sbjct: 210 NSELASAVLMSESSLKRRMYKEVGSISTFVHKIKLTEAIRKLRRTNTPISVISSELGYSS 269 Query: 225 TSYFISVFKDFYGMTP 240 SYF VF + P Sbjct: 270 PSYFSKVFFKYLKTYP 285 >UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5C3_9GAMM Length = 275 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNEL 206 +S+ ++ +I +D D + + +S S L++KLK+E + I R+ ++ L Sbjct: 165 LSNQIHLVIANDQELDVTIESLCQRFAMSESTLRRKLKAEGITLQDIKDQVRLGQGLHLL 224 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA 253 K+I ++ CGY S S F FK +G+TP SQ R+ +A Sbjct: 225 QSTRKSIGMIANVCGYQSQSRFSERFKYRFGLTP----SQLRKTQMA 267 >UniRef50_UPI0001973505 two-component response regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973505 Length = 330 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 153 QIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGK 211 + I+S + ++ +L+++ L LS S KK K E T Y +T +M A LM D + Sbjct: 231 RFIDSHLEQELSLTVLCEELSLSHSYFSKKFKRETGTGYVTYVTMAKMERART-LMEDPR 289 Query: 212 N-ISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 N +++++ GY SYF F+ ++G +P + S R Sbjct: 290 NRANEIAKQLGYYDYSYFFQNFRRYFGCSPREFKSHGR 327 >UniRef50_Q48G15 Transcriptional regulator ArgR n=24 Tax=Pseudomonadaceae RepID=Q48G15_PSE14 Length = 351 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Query: 154 IIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKN 212 ++E++I + +A +C+S L++ K N SQ R+ A LM K+ Sbjct: 241 LMEANIEEPLTTDEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKS 300 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 I Q+ SCG++S +F S +++F+G TP +Q R Sbjct: 301 IIQIGLSCGFSSGPHFSSAYRNFFGATPREDRNQRR 336 >UniRef50_A0Z5W8 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5W8_9GAMM Length = 345 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 19/154 (12%) Query: 98 FRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSD--SVYQII 155 ++ AA H + PA E L L L+S V + +LR +++ +V ++I Sbjct: 209 WKTAAIHRVRPAHNEGVASANFEL---ALQSRLNSSDLVRQVKALLRARLAEGNAVQKVI 265 Query: 156 ESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQ 215 DI L L++ LK+E TS+ ++T R A+ L M+ + I Sbjct: 266 AEDI-------------GLEIRTLQRSLKAEGTSFRSLLTGVRKEQALKCLSME-QPIGV 311 Query: 216 VSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 +S GY S F + FK ++G++P Y E Sbjct: 312 ISADLGYLDQSAFSAAFKGWFGVSPAEYRKSQSE 345 >UniRef50_B5YAV6 Two-component response regulator n=2 Tax=Dictyoglomus RepID=B5YAV6_DICT6 Length = 496 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%) Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPSLLKK---KLKSENTSYSQIITTCRMRYAVNEL 206 + + IE++ +KD L +A +P L K K EN ++ + R+ A EL Sbjct: 395 KIAEYIEANYYKDLRLREIAKEFGYNPCYLGKIFRKYMGEN--FNTYLDKVRVNKA-KEL 451 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 ++ G + +V++ GY YFI FK + G TP +Y+ + Sbjct: 452 LISGGKVGEVAERVGYKDIDYFIMKFKKYTGKTPKNYIKE 491 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 154 IIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKN 212 II++ + ++N+ M+AS L +S L +K+KS ++S +II R++ A L G N Sbjct: 420 IIKNLANSEFNVEMLASQLDMSRVQLYRKVKSVTDSSPVEIIRITRLQQADRLLKQGGMN 479 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTP 240 +S+VS G++S SYF +K+ +G P Sbjct: 480 VSEVSYRVGFSSPSYFSKCYKEQFGHVP 507 >UniRef50_A3YC06 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YC06_9GAMM Length = 356 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 16/129 (12%) Query: 137 SLMMYMLRNCVSDSVYQIIESDIHKD-------------WNLSMVASCLCLSPSLLKKKL 183 +L+ Y+ RN D V Q ES +H +N VA L +S L +KL Sbjct: 223 ALLGYIDRNM--DEVNQT-ESSLHSQVKHLIAEGIKTGRFNSHEVAVKLNMSRQTLHRKL 279 Query: 184 KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 E+T++S I+ R V+ L+ D ++S++ G+ S F FK ++ MTP Y Sbjct: 280 AQEDTNFSAILAEVRKEKVVHFLISDQHVFDEISEALGFKEPSAFYRAFKSWFNMTPNKY 339 Query: 244 VSQHRERTV 252 ++R++ Sbjct: 340 RQLMKQRSL 348 >UniRef50_Q0SVI3 DNA-binding response regulator, AraC family n=9 Tax=Clostridium perfringens RepID=Q0SVI3_CLOPS Length = 529 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 1/106 (0%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELM 207 + + + IE +I K L MVA+ + L+ S L + KSE + I +M+ A L Sbjct: 424 NEIIKFIEKNIDKRITLVMVANAVNLNESYLSRIFKSETGKNLMYFINEVKMKKAKELLK 483 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA 253 + +V+ S G YF VFK FYG++P + S + + ++ Sbjct: 484 QQDTLVKEVANSIGMTDQFYFNRVFKKFYGVSPSKFKSDYNNKVLS 529 >UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G6T3_ABIDE Length = 534 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 161 KDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQS 219 +D L VA +S + + + LK N S+ Q++ + RM A + D + ++++ Sbjct: 447 EDLTLDSVADKFHMSKTYISRILKKYTNQSFLQLLISRRMDIARKMIAEDKFKLYEIAEK 506 Query: 220 CGYNSTSYFISVFKDFYGMTPLHY 243 GYN SYFI VFK YG+TP Y Sbjct: 507 VGYNDFSYFIQVFKKKYGVTPNEY 530 >UniRef50_B3CG99 Sensor protein n=4 Tax=Bacteroides RepID=B3CG99_9BACE Length = 1396 Score = 51.2 bits (121), Expect = 3e-05, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 165 LSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 + M+++ + +S L +KLK N + Q+I R++ A + L NI++V+ G+ Sbjct: 1302 VEMISTEVGISRVHLHRKLKGLTNQTTQQLIRNLRLKQAASLLAGKRHNITEVATLTGFA 1361 Query: 224 STSYFISVFKDFYGMTPLHYVSQH 247 +YF + F++ YGM+P Y+ +H Sbjct: 1362 HPTYFATAFREMYGMSPSEYMERH 1385 >UniRef50_D2QI98 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QI98_9SPHI Length = 251 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 159 IHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVS 217 ++ D+++ A L +S S LK++LK+ ++++S ++ R++ A N L+ ++ Q+S Sbjct: 156 VNSDFSIEKAALNLFMSTSTLKRRLKNYLDSNFSDLVKEFRLKKADNLLLNSDYSLEQIS 215 Query: 218 QSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 CG++S SYF FK Y + P Y +HR Sbjct: 216 VLCGFSSLSYFSRSFKASYKINPNQY--RHR 244 >UniRef50_B1ZXS3 Transcriptional regulator, AraC family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZXS3_OPITP Length = 287 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 164 NLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGY 222 + +A L +SPS L+ + ++ S + + R+ A L + +S+V++ CG+ Sbjct: 201 GIKQIAHTLGISPSHLRARFRASCGVSIGRHLRRLRLEKACGLLRLTPNRVSEVAEQCGF 260 Query: 223 NSTSYFISVFKDFYGMTPLHY 243 NS +F F+ YG++P+ Y Sbjct: 261 NSIYHFSRAFRAAYGISPMQY 281 >UniRef50_UPI0001789620 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789620 Length = 540 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 165 LSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 L VA CL L+PS + K E ++ + +T +M A L + + ++ +S Y+ Sbjct: 458 LDDVAGCLHLNPSYFSRMFKKETGVTFIEYVTRMKMERAKELLRQTDRTVGEICESLAYD 517 Query: 224 STSYFISVFKDFYGMTPLHY 243 + SYF FK + G+TP+ + Sbjct: 518 NVSYFSKTFKAYAGVTPVEF 537 >UniRef50_A7VWR5 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWR5_9CLOT Length = 503 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 1/97 (1%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMD 209 V + I S+ +K+ +++ VA L S + +K+K E S+++ +T CRM +A L Sbjct: 403 VLEYINSNYNKNPSINEVAGKLHSSGMYIGQKIKKETGKSFNEFLTECRMYHAEALLCET 462 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 +S++S+ G +++ YF +F++F G +P Y Q Sbjct: 463 NLKVSEISRRVGISNSQYFRRIFQEFTGQSPNDYRKQ 499 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 145 NCVSDSVYQIIESDIHKDW-NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAV 203 N + + ++ D+ + + +AS + +SP L+++LK ENTS+ +I R A+ Sbjct: 288 NTYTSKIRALVGRDLSQQMPDFEFIASQINVSPQTLRRRLKEENTSFQEIKDNMRRDAAI 347 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 L +I++++ G+ S F FK + G+TP Y Sbjct: 348 YYLSRREMSINEIAFKVGFTEPSTFHRAFKKWTGVTPGDY 387 >UniRef50_C4G3Y7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G3Y7_ABIDE Length = 527 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 2/99 (2%) Query: 147 VSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVN 204 ++ +V + IE + K + + +A+ L + S L++ K E N + +T RM A Sbjct: 426 IAYNVKKYIEENYTKPELTVEQIAAGLYVDSSYLRRTFKKEFNMKITDFLTQIRMEKARE 485 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 L+ D +S +S+ G+N +SY VFK ++G +P Y Sbjct: 486 LLVQDRYKLSDISEMVGFNDSSYLSKVFKKYFGKSPSEY 524 >UniRef50_A1U2D8 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1U2D8_MARAV Length = 343 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%) Query: 165 LSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNS 224 L VA L + P L+ +L TS++Q++ R R A L ++I ++ G++ Sbjct: 251 LDAVAERLGIKPRTLRTRLTEAETSFNQVLADFRYRLARQLLATTDESIDEIVYLTGFSE 310 Query: 225 TSYFISVFKDFYGMTPLHY 243 S F FK + GMTP+ Y Sbjct: 311 PSTFYRAFKRWSGMTPIEY 329 >UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8J9_9FIRM Length = 351 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Query: 155 IESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNI 213 I + ++ + +A LSPS + E S+ I++ R++ A L+ GK+I Sbjct: 252 IRDHLQQEITMKEMADLCHLSPSYFSRTFNKETGESFVNYISSRRIQLAKELLLETGKSI 311 Query: 214 SQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 SQ+++ GY++ S+F +VFK G+ P Y S + + Sbjct: 312 SQIAEEVGYDNISHFTAVFKRTEGIPPSVYRSSKKRK 348 >UniRef50_A8EX63 Transcriptional regulator, AraC family n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EX63_ARCB4 Length = 283 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 115 KERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCL 174 K + L VL + D K + ++ N D + I+ES++ + + S Sbjct: 153 KLKIEELFLLVLQK--DEKSLIQFFNKII-NTTKDRIKYILESNLDFVNSFEDICSLTRQ 209 Query: 175 SPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 +PS ++K K E NT+ I R+ A L + ISQ++ SCGY+S S+FI FK Sbjct: 210 NPSKIRKYFKDEFNTTPKLWINEKRLEKATLLLKTTDETISQIATSCGYSSVSWFILEFK 269 Query: 234 DFYGMTPLHY 243 Y +TP Y Sbjct: 270 KRYNLTPKDY 279 >UniRef50_B5XRX2 Transcriptional regulator, AraC family n=6 Tax=Enterobacteriaceae RepID=B5XRX2_KLEP3 Length = 777 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 1/99 (1%) Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMM 208 SV I+++ + +L VA+ +S + L + E S+ Q +T R+R+A ++L+ Sbjct: 166 SVVARIDANYQRRLSLQEVAAAEFVSEAWLSRLFHKEVGVSFLQYLTALRLRHAADQLLT 225 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 K Q+++ G+ ST +FK +G+TP Y QH Sbjct: 226 TRKPAQQIAREQGFASTRMMSDLFKRQHGVTPRQYREQH 264 >UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulator ybcM n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFJ5_YERRU Length = 275 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%) Query: 163 WNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGY 222 W+ VA L +S S + L +E S+ QI+ R+ A+N + K I ++++ GY Sbjct: 175 WSARTVAEQLHMSVSTFHRHLAAEGGSFQQILDDVRLGNALNAIQTTSKPIGEIARDNGY 234 Query: 223 NSTSYFISVFKDFYGMTP 240 S F S F+ Y +TP Sbjct: 235 QCPSRFTSRFQKRYQITP 252 >UniRef50_A5TXQ0 Possible AraC family transcriptional regulator n=3 Tax=Fusobacterium RepID=A5TXQ0_FUSNP Length = 515 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 1/102 (0%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELM 207 D+ +E +KD +L+ VA+ +S S +K K + N ++S + R+ A L Sbjct: 413 DNSINFLEKYYYKDLSLTEVANVCNMSDSYFSRKFKEKFNINFSTYLLNIRLEKAKELLK 472 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 NI +S+ G+ +SYF FK YG+ P +Y +E Sbjct: 473 EKNLNIENISEMVGFKDSSYFSKSFKQKYGIAPHYYRDNFKE 514 >UniRef50_B7VRN2 Putative uncharacterized protein n=2 Tax=Vibrio splendidus RepID=B7VRN2_VIBSL Length = 339 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 7/102 (6%) Query: 148 SDSVYQIIESDIHKD----WNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAV 203 SD + ++ +H + +++M A LS +K++ K+ T S + R+R A+ Sbjct: 230 SDGLINRLQEYMHNEDPGRLSVAMCAEKSFLSERQMKRRFKAA-TGESPMNYIQRIRVAL 288 Query: 204 NELMMDGK--NISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 +D NI Q+SQ GYN T++F S+FK FY MTP Y Sbjct: 289 AREKLDTTSLNIEQISQQVGYNDTNHFRSLFKKFYEMTPTEY 330 >UniRef50_D1W3I8 Sensor protein n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W3I8_9BACT Length = 1317 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 3/96 (3%) Query: 151 VYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMM 208 + Q+I+ +I + ++ ++ + + +S SLL K+K+ N S + I R+ A +EL+M Sbjct: 1220 INQLIDKNIGNNEFAVTDITQAMAISRSLLHTKMKNLLNMSIGEYIRHKRLALA-SELLM 1278 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 G ++S+ + G++ +YF VFK FYG +P ++ Sbjct: 1279 KGFSVSETAYRSGFSDPNYFSKVFKKFYGKSPTEFI 1314 >UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU19_9GAMM Length = 335 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 4/102 (3%) Query: 148 SDSVYQIIESDIHKD---WNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVN 204 +D V Q+ + + ++ ++L VA+ L LS LK++LK +Y +I+ R+ AV Sbjct: 229 ADWVRQVRRAMVKQEGGYYSLEEVAAVLHLSVRTLKRRLKEHGANYHRILKEARLERAVA 288 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 L+ +G+ + V+ GY + F F+ + G +P Y Q Sbjct: 289 -LLKEGETVQTVAFQLGYQDPANFTRAFRRWTGCSPSDYRQQ 329 >UniRef50_B9MP59 Two component transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=B9MP59_ANATD Length = 502 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 1/108 (0%) Query: 143 LRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSY-SQIITTCRMRY 201 L N + + + I+ + +K+ L VA L+P L + K Y + + R+ Sbjct: 394 LSNGIMSELEKYIKENYNKNLTLKSVAQKFYLNPVYLGQLFKKHYGMYFNSYLQKIRVEE 453 Query: 202 AVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 A LM I ++SQ+ GYN T YFI F F MTP + ++R+ Sbjct: 454 AKRLLMSTNMKIYEISQAVGYNDTDYFIQCFTKFCNMTPNQFRKKYRK 501 >UniRef50_C4FYZ2 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYZ2_ABIDE Length = 535 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 13/107 (12%) Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPS----LLKKKLKSENTSYSQI--ITTCRMRYAV 203 S + ++++ +KD +++ VA L+ + L KKK TS S I +T RM+ A Sbjct: 433 SAIKFMQNNYNKDISINDVAERYNLNINYFSVLFKKK-----TSRSAINFLTELRMKAAK 487 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 L +N++ +S+ GY T YF VFK G+TPL Y + RER Sbjct: 488 EYLKNTEENVADISKKVGYEDTQYFFRVFKKSEGITPLMY--RKRER 532 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 349 6e-95 UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Ent... 247 2e-64 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 204 2e-51 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 182 1e-44 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 181 2e-44 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 175 1e-42 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 170 5e-41 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 168 1e-40 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 167 5e-40 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 165 2e-39 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 158 1e-37 UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 150 4e-35 UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 148 2e-34 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 146 5e-34 UniRef50_Q71VU1 Transcriptional regulator, AraC family n=21 Tax=... 143 5e-33 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 140 6e-32 UniRef50_Q2IYF7 Transcriptional regulator, AraC family n=1 Tax=R... 139 7e-32 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 139 1e-31 UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein ... 138 1e-31 UniRef50_B5F2H2 Porin thermoregulatory protein EnvY n=1 Tax=Salm... 138 1e-31 UniRef50_C3RGD0 Transcriptional regulator n=4 Tax=Bacteroides Re... 137 3e-31 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 136 6e-31 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 136 7e-31 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 136 9e-31 UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clost... 135 1e-30 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 135 2e-30 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 133 4e-30 UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 133 5e-30 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 133 7e-30 UniRef50_C6LKL3 Putative response regulator receiver domain prot... 132 8e-30 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 132 9e-30 UniRef50_UPI0001C3522D two-component system, response regulator ... 131 2e-29 UniRef50_D2QQS8 Histidine kinase n=1 Tax=Spirosoma linguale DSM ... 131 2e-29 UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_... 131 2e-29 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 131 2e-29 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 131 2e-29 UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=m... 131 3e-29 UniRef50_C0ECP0 Putative uncharacterized protein n=1 Tax=Clostri... 130 3e-29 UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vi... 130 3e-29 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 130 3e-29 UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein ... 130 3e-29 UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_... 130 3e-29 UniRef50_A6KYM2 Sensor protein n=17 Tax=Bacteroides RepID=A6KYM2... 130 4e-29 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 130 6e-29 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 130 6e-29 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 130 6e-29 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 129 7e-29 UniRef50_UPI0001C355CA AraC family regulatory protein n=1 Tax=Cl... 129 8e-29 UniRef50_UPI0001C36195 two component transcriptional regulator, ... 129 9e-29 UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=... 129 1e-28 UniRef50_D2EZ28 Sensor protein n=1 Tax=Bacteroides sp. D20 RepID... 128 1e-28 UniRef50_C1P7P5 Transcriptional regulator, AraC family n=1 Tax=B... 128 1e-28 UniRef50_UPI0001B9ECE6 two component transcriptional regulator, ... 128 2e-28 UniRef50_C6CT66 Two component transcriptional regulator, AraC fa... 128 2e-28 UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marin... 128 2e-28 UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=... 128 2e-28 UniRef50_UPI0001C358FB two component transcriptional regulator, ... 128 2e-28 UniRef50_B3C929 Sensor protein n=8 Tax=Bacteroides RepID=B3C929_... 128 2e-28 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 128 2e-28 UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillu... 128 3e-28 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 127 3e-28 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 127 3e-28 UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Ther... 127 3e-28 UniRef50_C6D8S9 Two component transcriptional regulator, AraC fa... 127 3e-28 UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein ... 127 4e-28 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 127 4e-28 UniRef50_A9KJM4 Two component transcriptional regulator, AraC fa... 127 4e-28 UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=G... 127 4e-28 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 126 5e-28 UniRef50_A7VU71 Putative uncharacterized protein n=1 Tax=Clostri... 126 5e-28 UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bactero... 126 5e-28 UniRef50_C6CVB2 Two component transcriptional regulator, AraC fa... 126 5e-28 UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing... 126 5e-28 UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacteriu... 126 6e-28 UniRef50_UPI0001C362BB response regulator receiver protein n=1 T... 126 7e-28 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 126 7e-28 UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecali... 126 8e-28 UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC... 126 8e-28 UniRef50_C6CT15 Two component transcriptional regulator, AraC fa... 126 8e-28 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 126 9e-28 UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryante... 126 9e-28 UniRef50_D2LTH2 Two component transcriptional regulator, AraC fa... 125 1e-27 UniRef50_Q5WCV1 AraC/XylS family transcriptional regulator n=1 T... 125 1e-27 UniRef50_B3CBW2 Sensor protein n=1 Tax=Bacteroides intestinalis ... 125 1e-27 UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecali... 125 1e-27 UniRef50_A7VR09 Putative uncharacterized protein n=1 Tax=Clostri... 125 2e-27 UniRef50_C6D7J5 Two component transcriptional regulator, AraC fa... 125 2e-27 UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecali... 125 2e-27 UniRef50_D1PFT7 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 125 2e-27 UniRef50_A6L4D6 Sensor protein n=8 Tax=Bacteroides RepID=A6L4D6_... 125 2e-27 UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. ora... 125 2e-27 UniRef50_A5ZID7 Sensor protein n=1 Tax=Bacteroides caccae ATCC 4... 124 2e-27 UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=D... 124 3e-27 UniRef50_B7ACV0 Sensor protein n=1 Tax=Bacteroides eggerthii DSM... 124 3e-27 UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostri... 124 3e-27 UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC ... 124 3e-27 UniRef50_UPI0001973B3B response regulator receiver protein n=1 T... 124 3e-27 UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=... 124 3e-27 UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 ... 124 4e-27 UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC ... 123 4e-27 UniRef50_C7II19 Two component transcriptional regulator, AraC fa... 123 5e-27 UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1... 123 5e-27 UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escheric... 123 5e-27 UniRef50_D1PCS5 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 123 6e-27 UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=A... 123 6e-27 UniRef50_UPI0001C36780 two component transcriptional regulator, ... 123 6e-27 UniRef50_B9MLQ2 Two component transcriptional regulator, AraC fa... 123 6e-27 UniRef50_A8RM75 Putative uncharacterized protein n=2 Tax=Clostri... 123 6e-27 UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Pae... 123 7e-27 UniRef50_D0WIH5 Transcriptional regulator, AraC family n=1 Tax=S... 123 7e-27 UniRef50_C7PB15 Transcriptional regulator, AraC family n=1 Tax=C... 122 8e-27 UniRef50_C9Y024 Putative uncharacterized protein n=1 Tax=Cronoba... 122 8e-27 UniRef50_B3CFH0 Putative uncharacterized protein n=1 Tax=Bactero... 122 9e-27 UniRef50_C6CTB8 Two component transcriptional regulator, AraC fa... 122 1e-26 UniRef50_UPI0001968F18 hypothetical protein BACCELL_00802 n=1 Ta... 122 1e-26 UniRef50_A7M2Q7 Sensor protein n=7 Tax=Bacteroides RepID=A7M2Q7_... 122 1e-26 UniRef50_C9KWT1 Sensor protein n=8 Tax=Bacteroides RepID=C9KWT1_... 122 1e-26 UniRef50_Q8AB44 Sensor protein n=5 Tax=Bacteria RepID=Q8AB44_BACTN 122 1e-26 UniRef50_A4XMI3 Two component transcriptional regulator, AraC fa... 121 1e-26 UniRef50_C6CUY4 Two component transcriptional regulator, AraC fa... 121 1e-26 UniRef50_C6CRT3 Transcriptional regulator, AraC family n=1 Tax=P... 121 1e-26 UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotro... 121 1e-26 UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=V... 121 2e-26 UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon... 121 2e-26 UniRef50_C5RE27 Transcriptional regulator, AraC family n=1 Tax=C... 121 2e-26 UniRef50_UPI0001C36481 AraC family transcriptional regulator n=1... 121 2e-26 UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=S... 121 2e-26 UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyri... 121 2e-26 UniRef50_D2LZT6 Two component transcriptional regulator, AraC fa... 121 2e-26 UniRef50_C8ZXM2 DNA binding response regulator n=4 Tax=Enterococ... 121 2e-26 UniRef50_C6CT27 Two component transcriptional regulator, AraC fa... 121 2e-26 UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC ... 121 2e-26 UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminoc... 121 2e-26 UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein ... 121 3e-26 UniRef50_C6JBV9 Two component transcriptional regulator n=1 Tax=... 121 3e-26 UniRef50_B7BD49 Sensor protein n=2 Tax=Parabacteroides RepID=B7B... 121 3e-26 UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonel... 120 3e-26 UniRef50_B8I1I4 Transcriptional regulator, AraC family n=2 Tax=C... 120 3e-26 UniRef50_A1A117 Transcriptional regulator, AraC family n=7 Tax=B... 120 3e-26 UniRef50_A8MEF5 Transcriptional regulator, AraC family n=1 Tax=A... 120 3e-26 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 120 4e-26 UniRef50_UPI000178A094 transcriptional regulator, AraC family n=... 120 4e-26 UniRef50_C0C1J0 Putative uncharacterized protein n=1 Tax=Clostri... 120 4e-26 UniRef50_A1HMP5 Two component transcriptional regulator, AraC fa... 120 4e-26 Sequences not found previously or not previously below threshold: UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_C6LLK3 Putative two-component response regulator n=1 Ta... 132 1e-29 UniRef50_C5D8H7 Two component transcriptional regulator, AraC fa... 132 1e-29 UniRef50_A6BIB0 Putative uncharacterized protein n=1 Tax=Dorea l... 131 2e-29 UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=... 131 2e-29 UniRef50_UPI0001788F54 two component transcriptional regulator, ... 131 2e-29 UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 T... 130 4e-29 UniRef50_A7M0D3 Sensor protein n=1 Tax=Bacteroides ovatus ATCC 8... 130 6e-29 UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostri... 129 9e-29 UniRef50_Q2RGN4 Two component transcriptional regulator, AraC fa... 129 9e-29 UniRef50_C6D127 Two component transcriptional regulator, AraC fa... 128 2e-28 UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bactero... 128 2e-28 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 128 2e-28 UniRef50_Q2BC36 Two-component response regulator n=1 Tax=Bacillu... 128 2e-28 UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Ther... 128 3e-28 UniRef50_C6CSY2 Two component transcriptional regulator, AraC fa... 127 3e-28 UniRef50_UPI0001788A43 two component transcriptional regulator, ... 127 3e-28 UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=R... 127 4e-28 UniRef50_C6D5X4 Two component transcriptional regulator, AraC fa... 126 4e-28 UniRef50_B5CYJ6 Putative uncharacterized protein n=1 Tax=Bactero... 126 4e-28 UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=... 126 4e-28 UniRef50_A4CGA1 Sensor protein n=1 Tax=Robiginitalea biformata H... 126 5e-28 UniRef50_Q2S2I5 Transcriptional regulator, putative n=1 Tax=Sali... 126 5e-28 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 126 6e-28 UniRef50_C6CT83 Two component transcriptional regulator, AraC fa... 126 8e-28 UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostri... 126 9e-28 UniRef50_C6D3S3 Two component transcriptional regulator, AraC fa... 125 1e-27 UniRef50_C6CVD2 Two component transcriptional regulator, AraC fa... 125 1e-27 UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=... 125 1e-27 UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=... 125 1e-27 UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 T... 125 1e-27 UniRef50_C5CTH9 Transcriptional regulator, AraC family n=1 Tax=V... 125 2e-27 UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. ora... 124 2e-27 UniRef50_UPI0001C35C03 two component transcriptional regulator, ... 124 2e-27 UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein ... 124 2e-27 UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bactero... 124 2e-27 UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacte... 124 2e-27 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 124 2e-27 UniRef50_C6QRS7 Two component transcriptional regulator, AraC fa... 124 2e-27 UniRef50_B3JI25 Sensor protein n=1 Tax=Bacteroides coprocola DSM... 124 3e-27 UniRef50_C5EUD7 Putative uncharacterized protein n=1 Tax=Clostri... 124 3e-27 UniRef50_A9KQP4 Two component transcriptional regulator, AraC fa... 124 3e-27 UniRef50_UPI0001788C2F two component transcriptional regulator, ... 124 3e-27 UniRef50_A6KZH7 Sensor protein n=8 Tax=Bacteroides RepID=A6KZH7_... 124 3e-27 UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicu... 124 3e-27 UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillu... 124 3e-27 UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=... 124 4e-27 UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and... 123 4e-27 UniRef50_A4XJL7 Transcriptional regulator, AraC family n=2 Tax=C... 123 4e-27 UniRef50_C6CTP9 Two component transcriptional regulator, AraC fa... 123 4e-27 UniRef50_A8VZY4 Response regulator receiver protein n=1 Tax=Baci... 123 5e-27 UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerot... 123 5e-27 UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=... 123 5e-27 UniRef50_C6LB63 Putative response regulator receiver domain prot... 123 7e-27 UniRef50_C6CWF4 Two component transcriptional regulator, AraC fa... 123 7e-27 UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=V... 122 8e-27 UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=m... 122 9e-27 UniRef50_C6CRZ9 Two component transcriptional regulator, AraC fa... 122 9e-27 UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=C... 122 1e-26 UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Ta... 122 1e-26 UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1... 122 1e-26 UniRef50_C6CZ23 Two component transcriptional regulator, AraC fa... 122 1e-26 UniRef50_A4XMG0 Two component transcriptional regulator, AraC fa... 122 1e-26 UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=E... 122 1e-26 UniRef50_C1PBK0 Transcriptional regulator, AraC family n=1 Tax=B... 122 1e-26 UniRef50_UPI0001788EF7 two component transcriptional regulator, ... 122 1e-26 UniRef50_C6CZ56 Two component transcriptional regulator, AraC fa... 122 1e-26 UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC... 122 1e-26 UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein ... 122 1e-26 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 122 1e-26 UniRef50_UPI00017895AE two component transcriptional regulator, ... 122 1e-26 UniRef50_C6D3W5 Two component transcriptional regulator, AraC fa... 121 1e-26 UniRef50_C4FUN9 Putative uncharacterized protein n=1 Tax=Catonel... 121 1e-26 UniRef50_C0Z8E4 Probable transcriptional regulator n=1 Tax=Brevi... 121 1e-26 UniRef50_A5GD53 Transcriptional regulator, AraC family n=1 Tax=G... 121 2e-26 UniRef50_A4CQ66 Activator protein MtlR n=10 Tax=Bacteroidetes Re... 121 2e-26 UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=P... 121 2e-26 UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=... 121 2e-26 UniRef50_Q2RJ70 Transcriptional regulator, AraC family n=1 Tax=M... 121 2e-26 UniRef50_A7VFB6 Putative uncharacterized protein n=1 Tax=Clostri... 121 2e-26 UniRef50_C6XSX1 Sensor protein n=1 Tax=Pedobacter heparinus DSM ... 121 2e-26 UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=A... 121 2e-26 UniRef50_A4WEG5 Transcriptional regulator, AraC family n=5 Tax=E... 121 2e-26 UniRef50_D1PRZ9 DNA-bindng response regulator, AraC family n=2 T... 121 2e-26 UniRef50_UPI0001C3678C two component transcriptional regulator, ... 121 2e-26 UniRef50_C6CXJ2 Transcriptional regulator, AraC family n=1 Tax=P... 121 2e-26 UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=... 121 2e-26 UniRef50_C9B0J9 DNA binding response regulator n=2 Tax=Enterococ... 121 2e-26 UniRef50_Q1VVA7 AraC-type DNA-binding domain-containing protein ... 121 2e-26 UniRef50_UPI0001851370 two component AraC family transcriptional... 121 3e-26 UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryante... 121 3e-26 UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=P... 121 3e-26 UniRef50_B0NUV9 Sensor protein n=3 Tax=Bacteroides RepID=B0NUV9_... 121 3e-26 UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein ... 121 3e-26 UniRef50_A6L237 Sensor protein n=6 Tax=Bacteroides RepID=A6L237_... 121 3e-26 UniRef50_C6LBC5 Two-component response regulator n=1 Tax=Bryante... 121 3e-26 UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostri... 120 3e-26 UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacte... 120 3e-26 UniRef50_A5I5L7 AraC-family transcriptional regulator n=10 Tax=C... 120 3e-26 UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostri... 120 4e-26 UniRef50_A9U7P8 Predicted protein n=1 Tax=Physcomitrella patens ... 120 4e-26 UniRef50_A8RW54 Putative uncharacterized protein n=1 Tax=Clostri... 120 4e-26 UniRef50_B1YJP0 Two component transcriptional regulator, AraC fa... 120 4e-26 UniRef50_D1PME6 Transcriptional regulator, AraC family n=1 Tax=S... 120 4e-26 UniRef50_UPI0001787EAA two component transcriptional regulator, ... 120 4e-26 UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostri... 120 4e-26 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 349 bits (895), Expect = 6e-95, Method: Composition-based stats. Identities = 253/253 (100%), Positives = 253/253 (100%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH Sbjct: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA Sbjct: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK Sbjct: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP Sbjct: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 Query: 241 LHYVSQHRERTVA 253 LHYVSQHRERTVA Sbjct: 241 LHYVSQHRERTVA 253 >UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Enterobacteriaceae RepID=ENVY_ECOLI Length = 253 Score = 247 bits (631), Expect = 2e-64, Method: Composition-based stats. Identities = 143/252 (56%), Positives = 192/252 (76%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 M++ S +PC+V+LTEK+V + VN +L N++A C NN+I++S+LN+ L+ HI+ Sbjct: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 +II DYL FLNK+L+ + W R ATP++ TP+VFR+AA HS E E TRA Sbjct: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 LLFTVLS FL+ +F++L+MY+LR+ V DSV +II+SDI WNL +VAS LCLSPSLLK Sbjct: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 KKLK+ENTSYSQI+T CRMRYAV L+MD KNI+QV+Q CGY+STSYFISVFK FYG+TP Sbjct: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 Query: 241 LHYVSQHRERTV 252 L+Y+++ R++ + Sbjct: 241 LNYLAKQRQKVM 252 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 204 bits (519), Expect = 2e-51, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 133/243 (54%), Gaps = 4/243 (1%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII-DVSSLNNTLVAHISHDIIKDY 66 P +++ + + + N I++ ++ ++ I L N A I+ I Sbjct: 22 PGVIICSINETILTFNDGNKITIAPGNLIFVDPRQLTITHYGELENV--ALITQKTISLL 79 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 + LN D S I ++ +P + C +F+ AA S + +EK R R+L+ ++ Sbjct: 80 VSALNSD-SLIHSYKAHNSPFIIRKCPDIAIFKYAANLSHKSDLSCAEKLRKRSLMLALM 138 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE 186 S FLD + F+ L+M +L ++ V +I S+I DW+L+++AS L +SPSLLKKKL++E Sbjct: 139 SLFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLMSPSLLKKKLQAE 198 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 T+YSQ++T CRM+ A+ L D + + + CGY S SYFI+VF+ +G+TP Y + Sbjct: 199 QTTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRKHFGITPTEYQDK 258 Query: 247 HRE 249 + Sbjct: 259 RQH 261 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 182 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 11/256 (4%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI-IDVSSLNN-----TLVAHI 58 D IV L+ + +NG I LK N ++ ++I ++ LNN + I Sbjct: 19 VDHHLIVKLSNVQGDVHING-HAIELKNNSTFVVPKFSHISCSINQLNNQENIELQLLMI 77 Query: 59 SHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERT 118 + I + ++++ L Q S +P+ T+P + ++P+ S E+T Sbjct: 78 DEESITEAFKYISA-LKQPTFPTASCSPVYTIPTPAIVDQNFVLFNKLLPSICGSSMEKT 136 Query: 119 ---RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 + L+F +++ ++ + ++ ++I D + W++ +A L + Sbjct: 137 LLSQCLVFILMALNEAGIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALFTT 196 Query: 176 PSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDF 235 S L++ L E S+SQ++ RM A+N L +ISQ+S G+ S +YF FK Sbjct: 197 QSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSISQISNRSGFGSAAYFCDAFKRK 256 Query: 236 YGMTPLHYVSQHRERT 251 YG+TP + + R+ Sbjct: 257 YGITPSQFRTTSRQEN 272 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 136/250 (54%), Gaps = 15/250 (6%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDI 62 I + +L + NG + + A+ + + C N + +S D Sbjct: 10 IAYARHKYILTMVNGEYRYFNGGDLVFADASQIQVDKCVENFV-----------LVSRDT 58 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDV--FRVAAQHSMMPAETESEKERTRA 120 + +L L ++ ++ ++ P L + T D+ F+ AQ S +E R RA Sbjct: 59 LSLFLPMLKEEALKLHAHKK--VPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLRKRA 116 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 L+F +LS FL+ +F+ L++ +L+ + V +I ++I +W L+ +AS L +SPSLLK Sbjct: 117 LIFALLSVFLEDTQFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLK 176 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 KKL+ E TSYSQ++T CRM+ A+ +++ G +I +V+ SCGY+S SYFI VF+++YGMTP Sbjct: 177 KKLREEGTSYSQLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTP 236 Query: 241 LHYVSQHRER 250 Y + + Sbjct: 237 TEYQERSAQE 246 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 175 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 15/248 (6%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C V+L + + GKE + L+ L++ + ++ +VA + I YL+ Sbjct: 8 CSVILILESFDVYF-GKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISRYLK 66 Query: 69 FLN----KDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 N D + P + + +L A H E E ++ FT Sbjct: 67 ANNLRDISDCREYPSYLKINFADFSL----IKGLISWANHCAEYIEIFDE-----SIAFT 117 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 LS F K+F + L++ + V II +D+ W L ++S L LS SLLK+KLK Sbjct: 118 CLSAFSSEKQFGVFLFECLKSTEA-KVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLK 176 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 E S+S+II RM+ A L IS+V++ CGY S SYF VF+ ++G++P Y Sbjct: 177 EEGVSFSKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYS 236 Query: 245 SQHRERTV 252 + E + Sbjct: 237 QRSSESKI 244 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 170 bits (430), Expect = 5e-41, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 118/237 (49%), Gaps = 14/237 (5%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C V+L + + GK+ + + N + L + + + N I I++ Y+ Sbjct: 4 CYVILVNRPFETEIAGKK-LFFQKNDVLLTDNISQSFFLRHPGNVTELRIDECIVRKYME 62 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESE---KERTRALLFTV 125 ++ Q S + + ++P + +A H++M + + ++ + + F Sbjct: 63 SADR-------IQHSDSAV-SVPFIKTTFSHIALLHNVMQNLSLQKTLPQQFSEQMFFAC 114 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 LS F + F+ +++ N V+ V II S + W + +++ L +S SLLK+KL+ Sbjct: 115 LSIFSTHRGFM-FLLFRCINSVALKVRYIICSSPSRAWRVKDISNSLYMSESLLKRKLQE 173 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 E S+SQI+ RM A +L+ +++Q++ CGY ST YFISVF++++G+TP Sbjct: 174 EKVSFSQILLDIRMHNA-RQLISSKLSVNQIAIRCGYASTPYFISVFREYFGITPHQ 229 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C ++L +R+ GKE I K + L+ + S+ ++ ++ + + D+ + Sbjct: 5 CSIILVLNSFGVRI-GKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVNDFFK 63 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFR-VAAQHSMMPAETESEKERTRALLFTVLS 127 N LS V +R L + C + + + A + + + + VLS Sbjct: 64 --NYTLSPFSV-RRFYPSYLIVECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLAVLS 120 Query: 128 RFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSEN 187 S+K V ++ N + V II SDI W L ++S L +S SLLK+KLK E Sbjct: 121 ----SEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEG 176 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 S+S++I RM A L+ + +V+ CGY++ SYF+SVF+ ++G+ P Y+S+ Sbjct: 177 LSFSKLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQYLSRF 236 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 167 bits (422), Expect = 5e-40, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 109/252 (43%), Gaps = 15/252 (5%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 R+ D+P ++ + +R G+E ++++A M LL DV + + + Sbjct: 28 RMAVDEPTLLYIQVGQKTLRWRGQE-LTIQAGEMVLLAA-GQTFDVLNNPDAKLGFYQAG 85 Query: 62 IIKDYLRFLNK--DLSQIPVWQRSATPILTLPCLT--PDVFRVAAQHSMMPAETESEKER 117 I R +++ DL + + + I L L DV R A ++ P K Sbjct: 86 WIALEQRVVDEFADLFGVETYVQELAKIQPLAPLKAHFDVVRQALENDEAPELVLKLK-- 143 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 LF +L+ + +S + + N + + ++I S+ +W +A L LS + Sbjct: 144 ----LFELLAWL--KAEHLSFVPHEKHNLLR-QIRKMIASNTAFEWTAETIARQLHLSET 196 Query: 178 LLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 L++ L+ +T++ +++T RM A+ L + +++++ GY+S S F FK +G Sbjct: 197 SLRRALQKSDTTFREVLTDVRMSRALTLLQITKWQVARIANEVGYDSPSRFTVRFKQRFG 256 Query: 238 MTPLHYVSQHRE 249 P + Sbjct: 257 FLPSDIRENLSQ 268 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 14/256 (5%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI------IDVSSLNNTLVAHI 58 D IV L D + +NG+ +++ +N ++ ++I D + + Sbjct: 48 VDHHLIVNLKNGDGDVCINGQS-VTISSNATLVIPKFSHISCTINQKDCHKNIELQLLMV 106 Query: 59 SHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSM--MPAETESEKE 116 + I +++ L Q + P+ L TPDV Q +PA ++ E Sbjct: 107 GEETIAQSFKYM-ASLKQPNTPTANCMPVYHLN-ETPDVVEQNFQLFQQSLPAVADTRLE 164 Query: 117 RT---RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLC 173 +T ++L F +L+ ++ + ++ ++I D + W++ +A L Sbjct: 165 KTFLTQSLFFILLALNEAGIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALF 224 Query: 174 LSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 + S L++ L E S+SQ++ RM A+N L +ISQ+ G+ S +YF FK Sbjct: 225 TTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSISQIGHRSGFGSAAYFCDAFK 284 Query: 234 DFYGMTPLHYVSQHRE 249 YG+TP + + RE Sbjct: 285 RKYGITPSQFRATSRE 300 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 109/239 (45%), Gaps = 10/239 (4%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C V++ + I K+ +SLK + L + + + I+H I+ YL Sbjct: 5 CSVIMVCSPINI-FLEKDTLSLKPGSVVLATKCIRALFLMHYGKVKIFDINHSIVSQYLE 63 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 +K L+L P A +++ ++ S L+ LS Sbjct: 64 IQHKLTR---THLTDVPLYLSLEPNNP-----ALAEALITSQRFSGDTTDMFLMMACLSL 115 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENT 188 F +S + + L + + +S V II++DI W L +A L +S SLLK KLK+E Sbjct: 116 F-ESDERILLFLSGCLSSISAKVRAIIQTDISASWTLGAIALRLHMSESLLKIKLKNEGH 174 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 +S+++ RMR AVN L V++ CGY+S SYFISVF +YG P YVS+ Sbjct: 175 MFSRLLLEERMRVAVNMLCSRHGYGQAVAEKCGYSSWSYFISVFHRYYGFPPDRYVSRQ 233 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 16/246 (6%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 D C V+ + + +N + IS K N + +++ + + + I Sbjct: 2 DYVCSVVFICQSFDLIIN-RRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 Query: 66 YLRFLNKDLSQIPVWQRSAT-----PILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 + +N +L ++ P L+L + ++A HS+ E Sbjct: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKER--------- 111 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 L ++L+ F ++ V+ + N + + II +I + W+L +A + S SL+K Sbjct: 112 LCISLLAMF-KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIK 170 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K+L+ E TS+++I+ RMRYA + + +I+ V+Q CGYNSTSYFI FKD+YG+TP Sbjct: 171 KRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 Query: 241 LHYVSQ 246 HY + Sbjct: 231 SHYFEK 236 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 9/240 (3%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C V+ + K+ + + +++ + + + IK YL+ Sbjct: 5 CSVIFIHHAFNANILDKD-YAFSDGEILMVDNAVRTHFEPYERHFKEIGFNENTIKKYLQ 63 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 N +PV + L ++ + + +E + + LLF+ LS Sbjct: 64 CTNIQTVTVPVPAKFLRASNVPTGLLNEMI------AYLNSEERNHHNFSELLLFSCLSI 117 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENT 188 F K F++L+ + VS V I+ + W L + CL +S SLLKKKLK E T Sbjct: 118 FAACKGFITLLTNGVL-SVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQT 176 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 ++SQI+ RM++A N + ++G +++++++ CGY STSYFI F+ +G +P ++R Sbjct: 177 TFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 146 bits (369), Expect = 5e-34, Method: Composition-based stats. Identities = 67/256 (26%), Positives = 117/256 (45%), Gaps = 13/256 (5%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLV----AHISHDI 62 Q ++ LT + I + E I+ + L + I + + + Sbjct: 38 QSVLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITMEETHEQLNYNLIELDSAS 97 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK---ERTR 119 IK+ F + + T T L P VA +++ + +S+K ++ Sbjct: 98 IKNAYNFFLYEHADFSDPLTKPT---TKHLLAPIETGVARVFNLLHSSNKSQKLSQDKKE 154 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 L+ +LS F+ + +L + +N +++++Y II SDI + W L ++ L +S S L Sbjct: 155 YLIRFLLSEFIYEPEAFALFRELSQNTLAENIYNIIISDISRKWALKDISDSLYMSCSTL 214 Query: 180 KKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 K+KLK E+TS+S++ RM A L NI++V+ CGY+S SYF VFK + T Sbjct: 215 KRKLKQEHTSFSEVYLNARMNKATKLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTT 274 Query: 240 PLH---YVSQHRERTV 252 P ++S R + V Sbjct: 275 PSEFLAFLSSSRHQYV 290 >UniRef50_Q71VU1 Transcriptional regulator, AraC family n=21 Tax=Listeria RepID=Q71VU1_LISMF Length = 780 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 103/248 (41%), Gaps = 21/248 (8%) Query: 11 VLLTEKDVWIRVNGKEPISLKANHMALLN-CENNIIDVSSLNNTLVAHISHDIIKDYLRF 69 + + + + + + L N + E+N+ ++++T AH D + +F Sbjct: 35 ITIKVSEQKFYLQEGDVLVLDRNTFYTIEGNEDNLFINLTISDTFFAHYYEDYFQHSFKF 94 Query: 70 LNKDLSQ-----IPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 +K+ + ++S + +L ++ AQ ++ + Sbjct: 95 FSKESDPGRERVVGSLRKSVSELLIASATKKRANKLEAQSALFQ-------------ILL 141 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 +L+RFL K S + + + + +E + +L A LS + L + K Sbjct: 142 LLTRFL-KKGIPSSARKEVNDKRISRIIREVEERFDEALSLREFAQKEFLSEAYLSRYFK 200 Query: 185 SE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + Q +T R+++A+ +L+ ++I++++ G++S +F VFK + +TP Y Sbjct: 201 KTTGLGFLQYLTEVRLKHAIQDLLHSAESITEIALKNGFSSQKHFSEVFKFHFELTPSEY 260 Query: 244 VSQHRERT 251 ++H T Sbjct: 261 RAEHHVET 268 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 107/250 (42%), Gaps = 12/250 (4%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII------DVSSLNNTLVAHISHDII 63 I +LT I +NG+ I ++++ ++ + + V +S + + Sbjct: 24 IAMLTGAKGNIVINGQS-IEIESDVTLIIPKYSQVSCNIVCNTVKQPLELHTLSMSAEEL 82 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKER----TR 119 + L K L + S PI + + +P + +S + + Sbjct: 83 QAVFLLL-KTLMKSGAPLTSHQPIYHISPPETVRDNFSLLKQCLPLKKQSASQEALLMKQ 141 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 +L F +++ + + ++L + + ++ +I + K W+L VA L +PS L Sbjct: 142 SLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDDVAKALFTTPSTL 201 Query: 180 KKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 ++ L E S+ Q++ RM A+N L ++ Q+S CG+ S +YF VFK Y MT Sbjct: 202 RRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAYFCDVFKRKYNMT 261 Query: 240 PLHYVSQHRE 249 P + Q R+ Sbjct: 262 PSQFRLQSRQ 271 >UniRef50_Q2IYF7 Transcriptional regulator, AraC family n=1 Tax=Rhodopseudomonas palustris HaA2 RepID=Q2IYF7_RHOP2 Length = 326 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 97/240 (40%), Gaps = 15/240 (6%) Query: 16 KDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLS 75 K + G+ +++ L + EN +IDV + + + ++ D ++ ++ + Sbjct: 89 KGLQYEQRGRSGLAMPGTVFLLNSAENYVIDVPDGSENITIKVDRRLLIDRVKGIDGLCA 148 Query: 76 QIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFL-DSKK 134 + + P++T + AQ +P +++ + + L L +S + Sbjct: 149 SMNIANSQLVPVVT---------TLGAQLLNLPPGEHADRLQQSVIDLICLMLDLRESAQ 199 Query: 135 FVSLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKSENTSYSQI 193 + + L + + + ++ ++H D + A +S L K TS+ Q Sbjct: 200 DKTFIRQTLASSLYHRIDAYLQRNLHDCDLSPDHAAREHKISVRYLHKVFHFHGTSFGQR 259 Query: 194 ITTCRMRYAVNELM----MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 + R++ A + N+ QV+ CG+ S SYF + ++ +G+TP R+ Sbjct: 260 LLELRLQRAHYVISRHGATTTINLGQVAYECGFTSQSYFSTCYRKRFGLTPRQTGKSDRQ 319 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 +S L + V ++ N + + Q +E H + +L +A LS + + Sbjct: 410 WREQISGRLYAASRVLTQIHSKDNHIIHDIAQYLEQHYHDEISLQQIAGKFFLSREYISR 469 Query: 182 KLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K K E + S + R+ A L+ I+Q+++ GY YF VFK G TP Sbjct: 470 KFKQEFGVTLSDFLGRIRIEKAKTLLLNPQIRIAQIAEMVGYQDEKYFSKVFKKMEGFTP 529 Query: 241 LHYVSQH 247 Y +H Sbjct: 530 NEYRKKH 536 >UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein n=3 Tax=Aliivibrio RepID=B5ETV0_VIBFM Length = 266 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 102/246 (41%), Gaps = 7/246 (2%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNC--ENNIIDVSSLNNTLVAHIS 59 R ++ I ++T R + I+L A L + + I + NN + Sbjct: 20 RYPVERNGIFIVTSGQFHYRDRSGDDITLNAGDFLLYSSGDISKIKMTNDNNNFKAQSVV 79 Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 D + + +FL+ S P + V ++ ++ + Sbjct: 80 ID-VALFQKFLSY--SNAPAHSPCNSDTFIFTAQDTSVVKLLELLKEQLTNNDN-NDTLE 135 Query: 120 ALLFTVLSRFLDSKK-FVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 L +LS ++ + + + + S + + +E I D + MVA L +S S Sbjct: 136 FLTLALLSEMVNKQPCLIPFIQKISVLTTSQQLIRYVEEHISADLTIDMVAPKLGMSAST 195 Query: 179 LKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 LK+KL+S+ S++ ++ R+ YA +L + K I++++ G+ + ++F + FK G+ Sbjct: 196 LKRKLQSDKLSFAHLVKVKRINYAATQLRLTRKTITEIAYDTGFKTAAHFSTSFKSVKGI 255 Query: 239 TPLHYV 244 TP + Sbjct: 256 TPKEFR 261 >UniRef50_B5F2H2 Porin thermoregulatory protein EnvY n=1 Tax=Salmonella enterica subsp. enterica serovar Agona str. SL483 RepID=B5F2H2_SALA4 Length = 146 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 96/138 (69%), Positives = 115/138 (83%) Query: 11 VLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFL 70 +LLTEKD W+RVNGKEPISLKAN+MA+L CENN+ID+SSLN+ LV +S + IKDYL+FL Sbjct: 1 MLLTEKDTWLRVNGKEPISLKANYMAILACENNVIDISSLNSVLVIQVSRNNIKDYLQFL 60 Query: 71 NKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFL 130 NKDLS +PVWQR+A P+LT CLTPD+FRVAA++S M E ERTRALLFTVLSRFL Sbjct: 61 NKDLSHLPVWQRNADPLLTANCLTPDIFRVAARYSAMETPDEIVSERTRALLFTVLSRFL 120 Query: 131 DSKKFVSLMMYMLRNCVS 148 D KKF+SL+M+MLR S Sbjct: 121 DHKKFISLLMHMLRTDES 138 >UniRef50_C3RGD0 Transcriptional regulator n=4 Tax=Bacteroides RepID=C3RGD0_9BACE Length = 283 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 103/236 (43%), Gaps = 16/236 (6%) Query: 27 PISLKANHMALLNCENNIIDVSSL----NNTLVAHISH--DIIKDYLRFLNKDLSQIPVW 80 I L+ M ++ +N++I +L N LV ISH D++ +YL F + LS P+ Sbjct: 48 AIVLQGGAMIEIDGKNHLIYTGTLIYLYPNHLVRQISHTEDLLLEYLWFEFEFLSDFPLL 107 Query: 81 QRSATP--ILTLPCLT--PDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFV 136 ++ + PCL ++ ++ + AE E A+ +L F+ + Sbjct: 108 LKADISEYVGKNPCLQLKDKERQLVKKYYDLIAERYQESNEYIAITKGLLFSFILEISRL 167 Query: 137 SL-----MMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSY 190 + ++ ++D + ++ K+ ++S A L +S L + LK ++ Sbjct: 168 YSGKNVSVSNTRQDELTDHFFFLLHQHYKKERSVSFYADKLYISDKYLMRVLKKSTGQTF 227 Query: 191 SQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 + MR A L +I+++S+ Y + S+F VF + GMTP + +Q Sbjct: 228 HFWVIEFIMREAKLLLRSTTISITEISEKLNYPNPSFFSRVFHQYVGMTPKEFRNQ 283 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 110/247 (44%), Gaps = 6/247 (2%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN----NIIDVSSLNNTLVAHI 58 +C + + E+ I + L+ N + + + DV + + L+ I Sbjct: 50 VCLHHGHVTITDERGRTIHCVAPGLMVLERNQLINITMQEVDGHLSFDVLDIPHELLT-I 108 Query: 59 SHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERT 118 +H+++ + L+ ++ S F ++ + + E E T Sbjct: 109 AHELLIEKLQTEHQPGEHPFRIVYSNDFAARKEVFDLLRFTLSQEKKGIFENEEKENIAT 168 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 ALL +LS F+ F ++ + V VY ++ ++ K W L V+S + +S S Sbjct: 169 YALLL-LLSGFIHDTAFAGIISRSAKLSVKYKVYNLLYTEPDKQWKLDDVSSAIFMSAST 227 Query: 179 LKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 LK+KL +E T++S++ T RM A L +++ V+ CGY+S SYFI+ FK + + Sbjct: 228 LKRKLATEGTTFSELYITARMNLASKLLRTGKYSVTNVAVLCGYDSVSYFIACFKRQFNI 287 Query: 239 TPLHYVS 245 TP ++ Sbjct: 288 TPSAFMK 294 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 16/242 (6%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C +L +K + + K+ + L + LL S + L ++ D +++YL Sbjct: 11 CYFILIKKPINFQFL-KDFLILNYGDVLLLKHSERDFLQSYSDKYLEIELNEDTVRNYLS 69 Query: 69 FLN----KDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 + N + L P R + PD+ + ++ + A+ F+ Sbjct: 70 YYNHCEKQFLETPPCILRKSFAY-------PDLLISMI--DNINSQNHIHPDFKDAIFFS 120 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 +LS F D + + + S V I SD+ K W L +A L +S SL+KKKL Sbjct: 121 LLSVFSDVANLRAFLTSGMP-TFSGKVRSIFLSDVSKHWKLRDLADYLYMSESLIKKKLL 179 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 ENTS+S+I+ RM A+ L I VS+ CG++STSYF+ +F+ +Y TP Y+ Sbjct: 180 LENTSFSKILLDTRMSLAIKLLKQ-NHPIKYVSEMCGFSSTSYFVCLFRQYYECTPRKYL 238 Query: 245 SQ 246 Sbjct: 239 KH 240 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 6/237 (2%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDY 66 C V+L + + I K +++ + + L++ + + + I I+ +Y Sbjct: 3 HVCSVVLVCRSLDIYYEKKH-LNIIKDSLILMDEKLAFRIPHNCSWVRSLEIDECIVSNY 61 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 L + + + T L P + V A A + L F+ L Sbjct: 62 L----QHIRHPAQYSGKHTRHRLLINHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCL 117 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE 186 S F + V L+ + N +S V +II D + W L VA L S SL+KKKL+ E Sbjct: 118 SLFSMHDELVPLLFNSI-NTLSGKVERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDE 176 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 NTS+S+I+ RM A L ++ ++ +++ CGY+STSYFI+ F+ +YG+TP Y Sbjct: 177 NTSFSKILLASRMARAKTLLELNQMPLTVIAEKCGYSSTSYFINTFRQYYGVTPHQY 233 >UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clostridium RepID=A0Q2M6_CLONN Length = 246 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 1/154 (0%) Query: 96 DVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQII 155 D F+ + + + K + +L+ F+ K V + I Sbjct: 92 DDFKFVQKALRIKVDDYLLKPIRPQKIVDILNEFIKDNKKRIEESNKNCTEEFQEVVEYI 151 Query: 156 ESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNIS 214 + + D L VA + S S L K K E ++++ IT R+ A L+ +I+ Sbjct: 152 DKNFKNDITLKDVADHVNFSSSYLSKLFKKEMGINFNRYITKIRIDKAKEILINSNISIN 211 Query: 215 QVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 +++ S GYN +YF VFK MTP Y + R Sbjct: 212 EIAFSVGYNEPNYFCKVFKKIVNMTPSEYRTNSR 245 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%) Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMM 208 I+ + L VA +SP K K ++ +T R+ A L Sbjct: 412 KAKDYIDRHYAEPLTLEEVAEQAGISPYYFSKLFKEHFGITFIDYVTNVRIERAKEALAE 471 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 +++ ++ S GYN +YF VFK G++P Y + + R Sbjct: 472 TDQSLKEICFSVGYNDPNYFSRVFKKQTGLSPSEYRKKVQAR 513 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 92/183 (50%), Gaps = 11/183 (6%) Query: 82 RSATPILTLPCLTPD-VFRVAAQHSMM---------PAETESEKERTRALLFTVLSRFLD 131 R+ P+ +P D F+ + QH + E + + L +++ ++ Sbjct: 93 RNVYPLSKIPAQQTDTFFKFSGQHKRIDQLKDMLIEEVERKQNSQAQEHLALALMALMVE 152 Query: 132 SK-KFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSY 190 + + +++++ + + + Q IES+I ++ +L +A + +S + LK++L +E S+ Sbjct: 153 KQPELLNMIIRATQFSETQKIIQFIESNIEEEISLETLAKHMGMSTATLKRRLAAEEMSF 212 Query: 191 SQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 SQ++ R+ +A +L + K+I+ ++ G+ S ++F + FK MTP + ++ ++ Sbjct: 213 SQLLKIKRISHAATQLRVTDKSITTIAYESGFKSAAHFSTAFKAVQQMTPKEFRAKVQQH 272 Query: 251 TVA 253 A Sbjct: 273 GKA 275 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 86/224 (38%) Query: 22 VNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQ 81 + G + + K +L+ + + ++ N + F ++ Sbjct: 32 IKGSKRLFWKDEAFDILHPNIMLCEANASLNFENLPQQGRFLSRMFSFHCVPSDEMLELS 91 Query: 82 RSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMY 141 S +P + D A +++ E ES E T+ L + L + + + Sbjct: 92 MSNALGNYVPAVETDKALQATLNALFSFERESLSEATQRYWMMGLYQQLAERGLLHRLFT 151 Query: 142 MLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRY 201 S + + + D L VA +S + L +KLK E T Y +++ R+ + Sbjct: 152 SSNTSFSQKLSRYLSRSPGDDHPLEFVAERFAMSRATLIRKLKQEGTQYREVLAEVRLNH 211 Query: 202 AVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 A+ + N++ ++Q CGY S F FK +G+TP Y+ Sbjct: 212 ALYLMQNGSYNVALLAQLCGYQSEGRFSQRFKGKFGLTPSEYIK 255 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 6/240 (2%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDY 66 C V+L + I + ++ ISL + LL +T I + Y Sbjct: 3 HVCSVILIRRSFDI-YHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHY 61 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 L +++ Q+P + L +P + V A + + L + L Sbjct: 62 L----QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCL 117 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE 186 S F K+ + L+ + + VS V ++I DI K W L +A + S SL+KKKL+ E Sbjct: 118 SMFSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 NT +S+I+ RM A L + + +++ CGY+STSYFI+ F+ +YG+TP + Sbjct: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 25/245 (10%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKA------NHMALLNCENNIIDVSSLNNTLVAHISH 60 PC++++ + G + +SL+ L + ++ Sbjct: 39 DPCLIIV--------LRGAKVLSLQPELACRSGEFILAPAGIELQFMNLPEG-------- 82 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 + I + F DL IPV SA P + +A + + A Sbjct: 83 EYIAVVIGFCASDLEAIPV---SAPPDRDGAAIARVDRTLAEFLNQWINWIDVSPPELWA 139 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 L L+ L ++ + SL+ V +++ + KDW+L ++ L +S S L+ Sbjct: 140 LRRKELAHLLYARGYGSLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSESTLR 199 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 ++L+SEN + ++ + R+ ++ I+ ++ CGY S S F FK +GMTP Sbjct: 200 RRLQSENAGFRDLLESVRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERFKQRFGMTP 259 Query: 241 LHYVS 245 Sbjct: 260 SELRQ 264 >UniRef50_C6LKL3 Putative response regulator receiver domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LKL3_9FIRM Length = 538 Score = 132 bits (333), Expect = 8e-30, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 5/190 (2%) Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLP-CLTPDVFRVAAQ-HSMMPAETESEKERT 118 DI+ + L+++ Q+ Q +A+ IL L L PD +V A+ MP +S T Sbjct: 343 DILDNIAELLSQNRVQLAQAQDAASSILHLAIHLLPDGEQVTARIFQDMPDGYQSLYRFT 402 Query: 119 RALLFTVLSRFLDS--KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSP 176 R L+ +F+S N + ++V + I S+I K L A +SP Sbjct: 403 DTRQIVTWLRTLEDGLIRFLSEQRKSNVNFMVENVTKYIASNIDKRLTLHDTALTFNISP 462 Query: 177 SLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDF 235 + L + K N +++ +T ++ A L + +++ G+ + YF VFK + Sbjct: 463 NYLSQLFKKYRNVGFNEYVTQQKINAAKELLQQGSLRVYEIADRLGFENAFYFSKVFKKY 522 Query: 236 YGMTPLHYVS 245 G +P Y++ Sbjct: 523 EGCSPREYIN 532 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 132 bits (333), Expect = 9e-30, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 10/165 (6%) Query: 87 ILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNC 146 L P ++F A + + E+ER V+ + +D K +L + Sbjct: 104 YLLKPVKKSELFE--AVERAIHVSEQKERER-------VMKQLIDDKLINALDRHPQTRE 154 Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNE 205 Q I+ + D +L VA + L+PS K + ++S+ +T RM+ A Sbjct: 155 PIREAIQFIDQRLKDDISLKDVAEHVHLNPSYFSTLFKEQMQLTFSEYLTRRRMQRAKEL 214 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 LM ++++++ CGY + YFI +FK+ G TP Y + + Sbjct: 215 LMTTDMTVAEIAEECGYRTAKYFIHLFKEMEGKTPSSYRKSQKGK 259 >UniRef50_C6LLK3 Putative two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLK3_9FIRM Length = 531 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 54/133 (40%), Gaps = 1/133 (0%) Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 E + L + + + + + + ++ + ++ +L V+ + +S Sbjct: 397 EDYEDIRTWFLEKMMQTCCSIRDKNEDRSESLVEKARSYMQENYSREISLDDVSKEVNVS 456 Query: 176 PSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 P K K E ++++ +T R+ A L +I ++ GY +YF +FK Sbjct: 457 PYYFSKIFKEESGENFTEYLTNIRIGKAKELLENPELSIKEIGVMSGYTDPNYFSRIFKK 516 Query: 235 FYGMTPLHYVSQH 247 G+TP Y ++ Sbjct: 517 HTGITPREYRERY 529 >UniRef50_C5D8H7 Two component transcriptional regulator, AraC family n=3 Tax=Geobacillus RepID=C5D8H7_GEOSW Length = 515 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 1/108 (0%) Query: 140 MYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCR 198 + N I+ H L VA + +SP K K ++ +T R Sbjct: 403 RHQQANGKIGKAKDYIDEHYHHPLTLEEVAEYVGISPYYFSKLFKDRFGMTFIDYVTEVR 462 Query: 199 MRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 + A E+ K++ ++ GYN +YF VFK GM+P Y + Sbjct: 463 IARAKKEMADPNKSLKEICFLVGYNDPNYFSRVFKKHTGMSPTEYRKK 510 Score = 41.9 bits (97), Expect = 0.020, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Query: 198 RMRYAVNELMMD---GKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 ++ A + + + +V++ G S YF +FKD +GMT + YV++ R Sbjct: 410 KIGKAKDYIDEHYHHPLTLEEVAEYVGI-SPYYFSKLFKDRFGMTFIDYVTEVR 462 >UniRef50_UPI0001C3522D two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3522D Length = 495 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 99/243 (40%), Gaps = 21/243 (8%) Query: 18 VWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLN------ 71 + + ++ L + ++ HIS DI+ D LR + Sbjct: 257 TQLEKRLENHFFFPEQNIFLPDGPDH-------PYAASGHISIDIVSDDLRLKDYDSLMH 309 Query: 72 --KDLSQIPVWQRSATPILTLPC---LTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 +DL + +++ + I C L ++ +EK + A + ++ Sbjct: 310 HLEDLFESLKHEKTHSLIFVKYCFTELMKEIIHYLPDDQKPDLNKVAEKIYSSANIVELM 369 Query: 127 SRFLDS-KKFVSLMMYMLRNCV-SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 KK +S +C+ SD + Q I + + +L+ ++S +SP+ L K Sbjct: 370 DMTCSQAKKLLSQTQKNQGSCLKSDKIRQYIYQNYTQPLSLNDISSHFYISPNYLCSVFK 429 Query: 185 SE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 E + + I R+ A L+ +++++++ G+++ SYF F+D+YG +P +Y Sbjct: 430 KETGCNLMKFINEYRLEQAAKLLLETEMKVNKIAETVGFSNPSYFSQRFRDYYGESPENY 489 Query: 244 VSQ 246 + Sbjct: 490 RQK 492 >UniRef50_D2QQS8 Histidine kinase n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQS8_9SPHI Length = 1343 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 97/218 (44%), Gaps = 19/218 (8%) Query: 47 VSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHS- 105 + + + +++ + + Y L + L P+ S PIL L R+ ++ Sbjct: 1128 IMNGPDLIISDVLMPELNGYE--LCRQLKSNPI--TSHIPILLLTAKVSAESRLEGLNAG 1183 Query: 106 -MMPAETESEKERTRALLFTVLSRFLDSK----------KFVSLMMYMLRNCVSDSVYQI 154 + RA + L++ ++ ++ L + + VY + Sbjct: 1184 ADDYLAKPFQVNELRARIRNRLAQQQQARHYFRSQLLREGYLPLASQAPEDDFMNRVYAL 1243 Query: 155 IESDIHKD-WNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKN 212 +ES + + + +A+ + +S L +K+K+ S +++I R++ A LM G + Sbjct: 1244 LESHLDDSTFGVEPLAAAIGMSRMHLNRKIKAMTGLSPNELIRAVRLKRAAELLM-TGAS 1302 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 +S+V+ G+++ +YF VFK+ Y +TP YV QHR+ Sbjct: 1303 VSEVADRVGFDTPAYFSKVFKEHYQLTPSEYVEQHRQE 1340 >UniRef50_A6BIB0 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIB0_9FIRM Length = 285 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 11/249 (4%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLN-CENNIIDV-SSLNNTLVAHISHDIIKDY- 66 I+ V I + E ++L+ N + + + E + I S L L H+ + Y Sbjct: 39 ILFCLNGSVRIHIE-HEHLTLQRNQLIVFDSKEVHSIHSDSKLYMFLCIHVDKKQLSVYC 97 Query: 67 --LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 L + + + +TP + L L D+ R ++ A + T L+ Sbjct: 98 PDLELYHIKCRPVSLDDSKSTPYIHLCQLAHDLTRTNVENKNTSA---MRSDGTALLMLA 154 Query: 125 VLSRFLDSKKFVSLMM-YMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 L R+ N + + + + +L VA+ + S + Sbjct: 155 DLIRYFSVYSLPGTTTGTGQSNDILRKIISYVNEHYTEKLSLEEVANQVGFSREYFCRFF 214 Query: 184 KSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K ++ + + R+ +A LM K+IS+V Q G+ + + F +FK+ YGMTP Sbjct: 215 KQHMGITFLRYLNEVRISHAGRILMNTDKSISEVMQESGFTNQTIFNRLFKEIYGMTPRQ 274 Query: 243 YVSQHRERT 251 + + E T Sbjct: 275 ARNSYAENT 283 >UniRef50_B3C5Z2 Sensor protein n=2 Tax=Bacteroides RepID=B3C5Z2_9BACE Length = 1382 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 19/183 (10%) Query: 83 SATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYM 142 S P++ L D + + A++ K + +LL + ++ L+ +K ++ ++ Sbjct: 1202 SHIPVILLTA--KDTLQDKTEGYDAGADSYVTKPFSASLLKSRVANLLEGRKKIASLISS 1259 Query: 143 ---------------LRNCVSDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS- 185 + N + + +IIE ++ + ++ +A L +S S L +K+K+ Sbjct: 1260 STHLKQSIIKESLNKIDNEFIERITRIIEENLMDEKIDVPTIAQELSMSYSSLYRKIKAL 1319 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 S + I R+R A L+ NIS+++ G NS SYF FK+ YGM+P Y+ Sbjct: 1320 TGMSTGEFIRKLRLRKAEQLLLSGKYNISEIAHQVGLNSVSYFRECFKEEYGMSPSEYIK 1379 Query: 246 QHR 248 Q + Sbjct: 1380 QLK 1382 >UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYL2_9BACL Length = 530 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 1/104 (0%) Query: 146 CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVN 204 + +++ ++IE + D NLS +A + S L K S+ Q +T RM AV Sbjct: 425 SIVEAMKEMIELNYMNDLNLSQIAEQYHYNLSYLSDLFKTKTGKSFLQYLTDVRMNKAVQ 484 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 L ++S +++ G+++ SYF + FK +G++P Y + + Sbjct: 485 LLDETPLSLSDIAELTGFSNASYFSTKFKKVFGISPSEYRQKDK 528 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 94/239 (39%), Gaps = 7/239 (2%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDI-IKDY 66 P IV + + + + +G+ I + L+ + I V++ + T I Sbjct: 27 PSIVAVEQGEKQFQWHGR-WIRFHKKNWLLIPAHSRITFVNNPHQTQFRSTQISFLIPPT 85 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 + LSQ S + + + MP E + + L L Sbjct: 86 AEMI--QLSQQNADTVSNHLDSPEFIVDDEGRYLWQLLLSMPKEL---SQAIQQQLVNGL 140 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE 186 ++L K + L+ ++ + Q D +++ + V LS + L ++L E Sbjct: 141 YQYLAEKGQLHLLYAPQEISWTEKLTQFFSQDPSQNYTIEQVCQQFGLSKATLMRRLNDE 200 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 +T + +++ RM +A++ L + + +++Q CGY S F F+ +G++P Y Sbjct: 201 STQFREVLAQVRMGHALSLLQEKSQTVLELAQQCGYQSEVRFTQRFQKQFGLSPKQYQK 259 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 96/240 (40%), Gaps = 11/240 (4%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDY 66 QP IV + +R G E ++ L+ DV + + + ++ Sbjct: 33 QPMIVRVLHGRKTLRYAGGE-LTATTGQWLLIAG-GQSFDVLNEPDA-----AQGYRSEW 85 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPA-ETESEKERTRALLFTV 125 L ++ ++Q S + L PD A ++ +T + A + Sbjct: 86 LMLGDEWVAQFFAQHPSRETLDLARVLRPDAAWDEAFLRVVQGVQTRLPETVLAARTMEL 145 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 L+ + ++ +S + Q+I D+ W ++ VA L +S + L+++L + Sbjct: 146 LAWL---AQAGAVFNPHSAQRLSKQIRQLIAQDMAASWQIADVAQRLGMSEATLRRRLAN 202 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 E S+ +++ +M A+ L ++QV+ + GY S + F + F+ +G TP Sbjct: 203 EGASFRELLGNIKMMRALTLLQTSPLGVAQVAYAVGYESPARFAAKFRAHFGCTPSDVRK 262 >UniRef50_UPI0001788F54 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F54 Length = 523 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 1/138 (0%) Query: 111 TESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVAS 170 + ++ R V+ F+ + N D + + I+ L+ VA Sbjct: 379 RKIDEARYAGEAIAVVEAFIREAERAIGETNTSVNPNMDRLLEYIQDHYADPITLTGVAR 438 Query: 171 CLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFI 229 + S L S +S+ + R+ A+ L+ IS++S S GY+ SYF Sbjct: 439 QFHFNASYLSSYFASYNGEGFSEYLNKIRLEKAMELLLTTELTISEISASVGYSDQSYFT 498 Query: 230 SVFKDFYGMTPLHYVSQH 247 VFK G++P + Q+ Sbjct: 499 KVFKKQTGISPSQFRRQN 516 >UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUG5_9GAMM Length = 187 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 58/123 (47%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 L+R D + L +++++ V +I+E N +A L +S L++KLK Sbjct: 63 LARVNDEQTQAYLDSFVVQSISRGVVDKIVEHLPDGPPNQQQIAQALHVSNRTLQRKLKD 122 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 E TS+ ++ R++ A L +++ + + G++ S F FK + G+ P + Sbjct: 123 EGTSFMDLLQDTRLQLARKYLSHPNRSVVETAYMLGFSEPSTFSRAFKRWTGVAPADFRD 182 Query: 246 QHR 248 HR Sbjct: 183 SHR 185 >UniRef50_C0ECP0 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECP0_9CLOT Length = 355 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 20/215 (9%) Query: 41 ENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRV 100 N ++D S N + +S D F N L I R A P L L TP++ R+ Sbjct: 145 FNLLVDRSWAENVFASLLSFD-----HGFFNFFLDSIYGLNRMA-PYLILDN-TPELTRI 197 Query: 101 AAQHSMMPAETESEKERTRALLFT-------VLSRFLDSKKFVSLMMYMLRNCVSDSVYQ 153 Q M AE EK + +LF+ +LSR D + + ++ + V+D + Sbjct: 198 FHQ---MIAEYFEEKACYQQILFSKLIELFAILSRQQDDSRRKKDLEFLQQRDVAD-ILN 253 Query: 154 IIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKN 212 I+ + ++ +L+ A +P+ L K +K +S I+ ++ A N L + Sbjct: 254 YIKVNY-REISLAKAAEFFNYTPNYLSKIIKRHTGRYFSDILQEYKLESACNYLTHSSLS 312 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 I ++++ GY+ SYF VF YG++P Y QH Sbjct: 313 IEKINEIIGYSDASYFSKVFSKRYGLSPNQYRQQH 347 >UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vibrio RepID=D0MC89_VIBSE Length = 269 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 110/257 (42%), Gaps = 24/257 (9%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLN--------NT 53 R + + ++ E + + E LKA L N D+SS Sbjct: 19 RYTATHNGLYVVEEGALLVHQPNGEQFELKAGDFTL----YNSADLSSAEAIPSEKGFKA 74 Query: 54 LVAHISHDIIKDY---LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAE 110 L + ++ D+ L + + SA + L + +A++++ + Sbjct: 75 LALVFNPNLFCDFKKAHPMLRSKTEERRFYPFSAQASSEVAQLKDTLVNLASRNAPDYTQ 134 Query: 111 TESEKERTRALLFTVLSRFLD-SKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVA 169 + +LS ++ +S++ S + IE++I KD L +A Sbjct: 135 --------GHIAMALLSLMVEVEPNILSIIDDASSLSDSQKAIKYIENNIEKDITLEGLA 186 Query: 170 SCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFI 229 + + +S + LK++L +E+ S+SQI+ R+ +A +L M K+I++++ G+ S ++F Sbjct: 187 AHMSMSIATLKRRLAAEDLSFSQILKVKRINFAATQLRMSEKSITEIAFESGFKSAAHFS 246 Query: 230 SVFKDFYGMTPLHYVSQ 246 + FK Y MTP + +Q Sbjct: 247 TAFKSVYNMTPKDFRNQ 263 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 7/155 (4%) Query: 99 RVAAQHSMMPAETESEKERTRAL----LFTVLSRFLDSKKFVSLMMYMLR--NCVSDSVY 152 V A + E +S E + A L +L + K + ++ + N + V Sbjct: 120 YVVALLDKLIFENDSPDELSPAFIKVGLIELLLFIIRCKNYEENVIKEIDVDNRIIQEVA 179 Query: 153 QIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGK 211 I + +L VA LS S L KK K + + + I R++ A N L+ K Sbjct: 180 TYIYEHYADNLSLEYVADKFNLSRSYLSKKFKTATGFGFKEYIINVRIQNACNLLLETNK 239 Query: 212 NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 +I+ ++ CG+N ++YF F+ G++P Y Sbjct: 240 SITDIAFECGFNDSNYFGDAFRKAKGISPHKYRKN 274 >UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLV0_9BACI Length = 525 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 134 KFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQ 192 K +S Y + + ++ + +D NL +A LS + +K K + + + Sbjct: 407 KILSDAKYQKEKNSMQRIEEYLQKNYQEDINLQEIADRFYLSREYISRKFKQDYDATITD 466 Query: 193 IITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERT 251 +T+ RM A N L I +V+ GY + YF VFK G+TP Y + ++ Sbjct: 467 YLTSIRMEKAKNLLKNPYLKIYEVAYGVGYQNEKYFSKVFKKHEGVTPNEYRQSYSTKS 525 >UniRef50_A6KXQ8 Sensor protein n=2 Tax=Bacteroides RepID=A6KXQ8_BACV8 Length = 1340 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 11/184 (5%) Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 L + + + A LT P F HS + E+ K A L + Sbjct: 1166 LTAKDSLQDKEEGYASGADSYLTKP------FSAKLLHSRINNLLETRK--KIASLLALA 1217 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIH-KDWNLSMVASCLCLSPSLLKKKLKS 185 + VS + L N + QIIE ++ + +++ +A +C+S S L +K+K Sbjct: 1218 DIQPKQESAVSSLNK-LDNEFLQKITQIIEENLEMEKMDIAFIADKMCMSHSTLYRKIKG 1276 Query: 186 -ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + S ++ I +MR V LM IS+++ G++S +YF FKD YGM+P YV Sbjct: 1277 LTDMSANEFIRKVKMRKGVELLMSGQYTISEIAYMIGFSSVAYFRQCFKDEYGMSPSDYV 1336 Query: 245 SQHR 248 Q + Sbjct: 1337 KQKQ 1340 >UniRef50_A6KYM2 Sensor protein n=17 Tax=Bacteroides RepID=A6KYM2_BACV8 Length = 1346 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 10/182 (5%) Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 L + + +Q A LT P F HS + ES K A F Sbjct: 1169 LTAKDSLQDKEEGYQVGADSYLTKP------FSATLLHSRIHNLLESRK--LLAERFNTN 1220 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIH-KDWNLSMVASCLCLSPSLLKKKLKS 185 S +D + V+ M L N + + ++IE + + ++ ++ +C+S S L +K+K+ Sbjct: 1221 SILIDKRAAVTESMNKLDNEFLEKINKLIEDRLSSEKIDIGYLSDAMCMSNSTLYRKMKA 1280 Query: 186 -ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 S ++ I +M+YA L+ NIS+V+ G NST YF FKD +GM P Y+ Sbjct: 1281 LTGLSTNEYIRKIKMQYAERLLLEGKYNISEVAFKVGINSTVYFRQCFKDEFGMAPSDYL 1340 Query: 245 SQ 246 + Sbjct: 1341 KK 1342 >UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 Tax=Faecalibacterium prausnitzii RepID=C7H973_9FIRM Length = 271 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 93/251 (37%), Gaps = 18/251 (7%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 ++ C ++L + V G E + + ++ HI+ +++ Sbjct: 30 EEICRIILVSGGSFTLVRGGESL-------LVNPGCVLLLGPGGGLLQQAGHIAPELLGC 82 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVF-------RVAAQHSMMPAETESEKERT 118 L + + L P ++ R+ MM + ESE E Sbjct: 83 RFPA--GVLPVLKNLMQRDFMPLFEPGAQTALYGPVQWSGRLRTLLGMMQS-AESEPESP 139 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 + T++ +++ + RN + + + ++ + ++L+ VA+ LSP Sbjct: 140 GMIYLTLILHYVEQECRSEKQDIRPRNETVEQICAYLAANYQQKFSLTDVAARFYLSPYY 199 Query: 179 LKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 L + + S I R+ A L NIS V++ G+ S ++F VF++ G Sbjct: 200 LSRLFRRVTGQSIVDYINGRRIEAAQRLLESTDLNISAVAEQTGFASAAHFRRVFRETMG 259 Query: 238 MTPLHYVSQHR 248 PL Y HR Sbjct: 260 TGPLQYRKSHR 270 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 3/131 (2%) Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 ++L +L F S S + +S + +I D+ K W L +A + +S S + Sbjct: 109 SMLLYLLMHFEQSA---SQAETRSYSSLSSRIRALISKDLTKPWTLKEIAKLVYMSESTV 165 Query: 180 KKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 K+KL E T+++ ++ R+ A + ++S +++ CG+ SYF + F+ YG T Sbjct: 166 KRKLNKEGTTFTDVLQAARLDTAQKMVCNSDASVSAIAELCGFKHASYFGACFRKEYGAT 225 Query: 240 PLHYVSQHRER 250 PL Y Q + R Sbjct: 226 PLAYRKQAQLR 236 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 81/180 (45%), Gaps = 15/180 (8%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLM 139 Q S P++ L + D R+ Q A++ K LL L +D+ K + Sbjct: 729 LQTSHIPVMLLTACSLDEQRI--QGFECGADSYISKPFNSKLLLVRLRNLIDNHKRLKQF 786 Query: 140 M-----------YMLRNCVSDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS-E 186 + + ++IE+++ + ++ + S + LS L +K+K+ Sbjct: 787 FGDKITLSKESVSEVDKGFVERFRELIEANLTDSELSVEELGSKMGLSRVQLYRKIKALT 846 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 N S ++++ R++ A + L K IS+++ G+ S SYF +K+++G +P ++ + Sbjct: 847 NYSPNELVRIARLKKAASLLASSEKTISEITYEVGFTSPSYFTKCYKEYFGESPTDFLKR 906 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 84/197 (42%), Gaps = 6/197 (3%) Query: 56 AHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK 115 H+ I + L + + + I + + H ++ + + Sbjct: 302 IHLIKSEIGAMFKLLFEYEADPEYVRYIGFVIFSDIYRQHESVGSQMYHDLLHELNKCD- 360 Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 + A + VL L++ ++ ++ N V QI+ D +D +S +A L ++ Sbjct: 361 --SIAEIREVLHHALEATRYDQVLKQHNPN--IQKVLQIVLKDYAQDITISSIADTLHMN 416 Query: 176 PSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 L + K E N S+SQ + R++ A N L+ NI+++++ GY S+ YF FK Sbjct: 417 AMYLGQLFKKETNKSFSQYLNHFRIKEAQNLLLKSNHNINEIAELVGYTSSGYFYKNFKK 476 Query: 235 FYGMTPLHYVSQHRERT 251 G++P Y ++ ++ Sbjct: 477 ECGISPKEYRERYLKQP 493 >UniRef50_A7M0D3 Sensor protein n=1 Tax=Bacteroides ovatus ATCC 8483 RepID=A7M0D3_BACOV Length = 1353 Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 17/182 (9%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLM 139 Q S PI+ L D R+ + + A++ K +L T ++ L+ ++ + Sbjct: 1168 IQTSHIPIILLTARISDEARIESYKAG--ADSYISKPFNYDILLTRINMLLEQQEKRKEI 1225 Query: 140 MY-------------MLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKS 185 + L + +++E ++ +++++ + L +S S L +K +S Sbjct: 1226 FHKEIEISPQNITITSLDEEFVEKALRLVEENMENPEFSVNNLCDDLGMSRSQLYRKFES 1285 Query: 186 -ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + + I + R++ A L NIS++S G+NS YF FK+ +G TP Y Sbjct: 1286 ITGLTPNDFIRSVRLKRAAQLLRGSSYNISEISDRVGFNSIKYFNKYFKEEFGFTPTQYR 1345 Query: 245 SQ 246 S Sbjct: 1346 SN 1347 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 129 bits (325), Expect = 7e-29, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 140 MYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCR 198 + + I +D L +A + LS + + + K E +Y++ + R Sbjct: 428 RRPQYGEAVERACEYITLHYAEDLMLQDIADHVHLSRTYISELFKKETGMNYNEYLMQVR 487 Query: 199 MRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 M A L ++ + GY++TSYFI +FK++ G++P Y+ Q R Sbjct: 488 MEKAKELLKRQTLKVADAAALVGYSNTSYFIKLFKNYTGLSPSEYMEQQR 537 >UniRef50_UPI0001C355CA AraC family regulatory protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C355CA Length = 327 Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 2/158 (1%) Query: 97 VFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRN-CVSDSVYQII 155 + + + +P E + R + L + R +D ++ +L + V + I Sbjct: 168 IDHIFGELYQIPQEFRHDYFRIKVLELLLFLRMIDPEQERALDRVTRNQIDIIRQVRRRI 227 Query: 156 ESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNIS 214 ++ ++ + +A C+SP+ LK K +T+ + RM A L+ ++ Sbjct: 228 TQNLQENITIDQLAREYCISPTSLKSNFKQVYSTTIKDYLRKVRMERASALLLTTDSTVA 287 Query: 215 QVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTV 252 ++ S GY + S F + FK YG+ P Y + R + Sbjct: 288 DIAASLGYTNQSKFSAAFKTVYGLAPAEYRKKCRHEYI 325 >UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVY3_9CLOT Length = 529 Score = 129 bits (324), Expect = 9e-29, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%) Query: 117 RTRALLFTVLSRFLDS---KKFVS---------LMMYMLRNCVSDSVYQIIESDIHKDWN 164 R + LL +L+ + +KFV+ ++ + + I + KD + Sbjct: 382 RDQELLSALLAAGEEETARQKFVAAMVELAQAVVIKNQEPDGIITRAQDYIRQNFRKDIS 441 Query: 165 LSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 L VA + +SP K K E ++++ +T R+ A L +I QV GY Sbjct: 442 LEEVARTVGISPYYFSKLFKEEAGMNFTEYLTGIRIETAKRLLSERELSIKQVCVDSGYA 501 Query: 224 STSYFISVFKDFYGMTPLHYV 244 + +YF +FK + G+TP + Sbjct: 502 NPNYFSRIFKKWVGITPTEFR 522 >UniRef50_UPI0001C36195 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36195 Length = 145 Score = 129 bits (324), Expect = 9e-29, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 133 KKFVSLMMYMLRNCVSD----SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-EN 187 KK VS ++ +RN S S+ + IE + N++ +A L+ S L K Sbjct: 7 KKIVSRLLDGVRNKESADVIISIREYIEKNYDDSLNVADLARKYGLNVSYLSTLFKERTG 66 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 + + I RM A+N L +++V+ GY+++ YF VFK + G+TP Y Sbjct: 67 INITSYIEGIRMEKAMNLLRETNWKVTEVAFHVGYSNSGYFSRVFKKYTGVTPGEYGEME 126 Query: 248 RER 250 ++R Sbjct: 127 KKR 129 >UniRef50_Q2RGN4 Two component transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RGN4_MOOTA Length = 548 Score = 129 bits (324), Expect = 9e-29, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 1/122 (0%) Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 +L R + V+ + + D + IE++ +D L VA + LSP K K Sbjct: 416 ILERLMALVAQVAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLSPCYFSKLFK 475 Query: 185 S-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + ++ +T R++ A L+ +++++ GY YF VFK G TP + Sbjct: 476 QFKGLNFIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKKQEGYTPSVF 535 Query: 244 VS 245 Sbjct: 536 RK 537 Score = 42.2 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 58/182 (31%), Gaps = 35/182 (19%) Query: 90 LPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVS- 148 LP A + A K LL + + + M + N ++ Sbjct: 325 LPAPEEQELTQAIRMGDRQAAYRQAKNILMQLLLE-----QEKRPAILKMKLLELNTLAA 379 Query: 149 ----------DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCR 198 ++V + + + L +A + +L++ + + R Sbjct: 380 RAALEGGADPEAVSDLALASSTEFLTLDNLAD---MRERILERLMA-----LVAQVAETR 431 Query: 199 -------MRYAVNELM---MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + A + + +V++ Y S YF +FK F G+ + Y+++ R Sbjct: 432 EQRNSSLIDRASKYIEANFSQDLTLEEVARQV-YLSPCYFSKLFKQFKGLNFIDYLTKVR 490 Query: 249 ER 250 + Sbjct: 491 LK 492 >UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=Clostridiales RepID=C6JEP4_9FIRM Length = 531 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Query: 146 CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVN 204 + D + I + +D +L V+ + +SP K K E ++ + +T R++ A Sbjct: 428 SIIDRAKEYINENFRRDISLDDVSREVDISPYYFSKLFKQETGKNFIEYLTEIRLKNARE 487 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 L +I ++ GY+ +YF +FK + G+TP + + Sbjct: 488 LLQDSRLSIKEICAQSGYSDPNYFSRIFKKYEGVTPSEFRER 529 >UniRef50_D2EZ28 Sensor protein n=1 Tax=Bacteroides sp. D20 RepID=D2EZ28_9BACE Length = 1354 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 10/169 (5%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLM 139 + A LT P F HS + E+ K+ L + + Sbjct: 1193 YTAGADSYLTKP------FSAKLLHSRINNLLEARKKLAAGLAVATPH--SEPADETADS 1244 Query: 140 MYMLRNCVSDSVYQIIESDIH-KDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTC 197 M L N + QIIE ++ + +++ +A +C+S S L +K+K + S ++ I Sbjct: 1245 MNPLDNEFVQRITQIIEDNLEMEKMDIAFIADQMCMSHSTLYRKIKGVADMSANEFIRKV 1304 Query: 198 RMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 +M+ V L+ +IS++S G++S +YF FK+ +GMTP YV Q Sbjct: 1305 KMKNGVKLLLSGKYSISEISYMTGFSSVAYFRQCFKNEFGMTPSEYVKQ 1353 >UniRef50_C1P7P5 Transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1P7P5_BACCO Length = 292 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 8/184 (4%) Query: 68 RFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLS 127 FL + + + A LP + + +A+ +E Sbjct: 115 DFLQQQPLDLSSHRDFAAAYSKLPVFSLEKLSASAEVLGTLSEYYLSSVLNEE------- 167 Query: 128 RFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE- 186 + + + Q I+ IH+ L VA + LSP K K E Sbjct: 168 AKPAKESTAQVKKHASSKKEIKQALQYIQKHIHQPVTLEEVAGHVYLSPYYFSKLFKKET 227 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 ++ + +M A + L D +S ++ S G+ SYF VFK +Y TP Y + Sbjct: 228 GETFVSFVNRQKMNLAKDMLANDDLPVSYIAHSLGFREISYFSKVFKRYYQTTPTSYRAM 287 Query: 247 HRER 250 R++ Sbjct: 288 SRKK 291 >UniRef50_UPI0001B9ECE6 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ECE6 Length = 519 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Query: 136 VSLMMYMLRNCVS-----DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTS 189 + L+M R+ VS I + + +L VA + ++P+ + K E + Sbjct: 400 LGLIMKEYRDMVSTTSPVQRAISFIHEHLGQSLSLQQVAKHVHMNPNYFSEMFKKETGQN 459 Query: 190 YSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 Y + +T ++R A++ L IS+++ GY YF +FK + G+TP Y + Sbjct: 460 YIEFVTQAKLRKAMHLLRETPAKISEIANEIGYEDIKYFNRLFKKWTGLTPSEYRTN 516 >UniRef50_C6D127 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D127_PAESJ Length = 534 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYA 202 + V Q I+ ++ +D + VA+ + L+P+ L + K E + + +M A Sbjct: 426 SDSVVQKSVQYIKENVEEDISREDVAAHVGLNPAYLSRLFKKETGQNLIDYLIETKMARA 485 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 L G +S ++Q GY++ S+F +FK YG+ P Y + Sbjct: 486 RQLLDTTGMTVSAIAQQVGYSNFSHFTKMFKKQYGINPQEYRN 528 >UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS86_9BACE Length = 425 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 2/138 (1%) Query: 111 TESEKERTRALLFTVLSRFLDS-KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVA 169 +ES+ RT L L+R D V ++ + + + ++ + L A Sbjct: 273 SESDHLRTAEELALWLTRMTDRFTDTVFSLVEVKHRDIICKAIEYLKRNCRDRVTLEDTA 332 Query: 170 SCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYF 228 + LSPS + K E S++ +T R+ L+ +I+++ CG++ SYF Sbjct: 333 GHVGLSPSYFSRVFKEEVGESFNSYLTALRISRGRAMLLDTDASIAEICDRCGFDDQSYF 392 Query: 229 ISVFKDFYGMTPLHYVSQ 246 VF+ + G+TP + ++ Sbjct: 393 TKVFRKYTGVTPGRFRAR 410 >UniRef50_C6CT66 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT66_PAESJ Length = 262 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK- 184 + RF+D+K + + Q +E +H+ + +A L ++ S K Sbjct: 132 MERFVDTKLLETTEQETQYSAPVKEAIQYLEEHLHEPVTMRDIADHLHMNASYFSVLFKE 191 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 ++S +T R++ A L +I+++++ GY + YF+ VF+ G++P Y Sbjct: 192 QTGLTFSDYLTRRRVQRAKELLTNTRLSINEIAEKAGYQTAKYFVKVFRSHEGVSPGQYR 251 Query: 245 SQ--HRERTV 252 H E T+ Sbjct: 252 KNVSHAEETI 261 >UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marinobacter algicola DG893 RepID=A6EZ51_9ALTE Length = 334 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIES-DIHKDWNLSMVASCLCLSPSLLKKKLK 184 L RF++ L+ + ++ V QI+E+ D + L +A L ++ L +KLK Sbjct: 211 LDRFIEKSPRNLLIWTDEDDSLTTRVRQILENVDDERLPTLEQIAGQLHMTAYTLSRKLK 270 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 +E +SY +I R AV L +S++S G+ F FK + G++PL Y Sbjct: 271 AEGSSYQKIKDNLRRDQAVIMLTRQNLTVSEISSQLGFTEPGAFSRAFKHWTGLSPLAYR 330 Query: 245 SQHR 248 Q + Sbjct: 331 KQDQ 334 >UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY53_9BACL Length = 545 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 3/191 (1%) Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 ++ +Y +++ + I + Q + ++ +AA H + + Sbjct: 347 RRLLDEYQARVDRSV-DITISQVHRELAIIREAAVSEMRGIAAAHPPLYDAAAITEVTDP 405 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNC-VSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 A L +L+ + D+ + + + + +++ +D +L VA+ L PS Sbjct: 406 AELRRLLAGWADAAEEYGADRRETDSSQLIWHIVDYLDAHYFEDISLIDVATRFHLDPSY 465 Query: 179 LKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 L K KS + ++ + +T R+ A L + IS++S+ GY + YF VFK G Sbjct: 466 LSKLFKSVTSENFIEYVTRKRIEKACELLRSSERKISEISELIGYENQRYFSQVFKKSTG 525 Query: 238 MTPLHYVSQHR 248 TP Y + Sbjct: 526 QTPSEYREAQQ 536 >UniRef50_UPI0001C358FB two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C358FB Length = 273 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 3/141 (2%) Query: 112 ESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNC--VSDSVYQIIESDIHKDWNLSMVA 169 +S+K R + L R L ++ M C V +E H+D +L ++ Sbjct: 127 QSQKHRKKVQLMETEIRKLKAEHLTDDMPVDSNGCSRVIRKALNYMEDHYHEDISLESIS 186 Query: 170 SCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYF 228 + L+ + + K E S+ Q +T R+ A L + G S+V+ G+ + SYF Sbjct: 187 EVVFLNKNYFSELFKKETGKSFVQYLTEYRLEKAKLLLAISGFKGSEVADMTGFQNNSYF 246 Query: 229 ISVFKDFYGMTPLHYVSQHRE 249 ISVFK + G TP Y + Sbjct: 247 ISVFKKYVGCTPKEYSESLHQ 267 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 13/181 (7%) Query: 70 LNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETES----EKERTRALLFTV 125 L + P Q SA L PC F A + A + + ERT Sbjct: 191 LEEATFAYPEPQHSAEYELLFPC--TRRFGAGATSLLFHARYLAMPLLQDERT------- 241 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 L +FL+ L + + + +++ D +L VA L SP L++ L+ Sbjct: 242 LKQFLEHSPADLLARPDGGDSLISQIRRLLGRDCRTWPDLEQVAQQLHTSPQTLRRHLRE 301 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 E TS+ ++ R A+ L D I +++ G++ S F FK + G+TP Y + Sbjct: 302 EGTSFQELKDHLRRDLAIYHLGRDELAIHDIAEQLGFSEPSAFHRAFKKWTGLTPGAYRA 361 Query: 246 Q 246 Q Sbjct: 362 Q 362 >UniRef50_B3C929 Sensor protein n=8 Tax=Bacteroides RepID=B3C929_9BACE Length = 1344 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 11/171 (6%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLM 139 + A LT P F HS + E+ K+ LL L+ +++ Sbjct: 1183 YASGADAYLTKP------FSAKLLHSCINNLLETRKKIASQLL---LADVKPAQEQAVSS 1233 Query: 140 MYMLRNCVSDSVYQIIESDIH-KDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTC 197 + L N + QIIE +I + +++ +A +C+S S L +K+K + S ++ I Sbjct: 1234 LNRLDNEFMQKITQIIEENIEMEKMDVAFIADKMCMSHSTLYRKIKGLADMSANEFIRKV 1293 Query: 198 RMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 +MR +V L+ IS++S G++S +YF FK+ YG++P YV Q + Sbjct: 1294 KMRKSVEMLISGEYTISEISYMTGFSSVAYFRQCFKNEYGVSPSGYVKQKQ 1344 >UniRef50_Q2BC36 Two-component response regulator n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BC36_9BACI Length = 515 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 14/210 (6%) Query: 54 LVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETES 113 + + L +L++ S + S P L +F + M E ++ Sbjct: 307 FTEEFKNGNVHSALAYLSEHTSSLAK-DSSIAPFEFKAFLGNAIFNITVILGNMTVEADA 365 Query: 114 EKERTRALL------------FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHK 161 +++ VL+RF+ + + + + ++ + Sbjct: 366 IQKKKYEYFKAVEDAGTASEALDVLARFIKEVDELLIPADNQNGITIKKIIEYMKEHYTE 425 Query: 162 DWNLSMVASCLCLSPSLLKKKLKSENT-SYSQIITTCRMRYAVNELMMDGKNISQVSQSC 220 L+ A +PS L + N S+ + + R+ A L+ IS++S Sbjct: 426 PITLTEAARHFHFNPSYLSSYFSAHNEGSFIEQLNKIRIEEASKLLLEGEATISEISGLV 485 Query: 221 GYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 G++ SYF VFK G++P Y ++ R Sbjct: 486 GFSDHSYFCRVFKKRTGLSPSQYKRKYFTR 515 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 7/171 (4%) Query: 78 PVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVS 137 P + P + D R + + ++ L FL + Sbjct: 169 PAHADEYDALFFAPVMQFDAPRTEITFAADYLDLPIRQDEK------TLEEFLKAAPAQL 222 Query: 138 LMMYMLRNCVSDSVYQIIESDIHKDW-NLSMVASCLCLSPSLLKKKLKSENTSYSQIITT 196 L+ + N ++ + ++++S I ++ L+ VAS L LSP L+++L +E SY + Sbjct: 223 LVKFKNTNSLTSRIREVLKSQIGEEMPTLNDVASMLYLSPQTLRRRLAAEGKSYQGVKDA 282 Query: 197 CRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 R A++ L+ + V+Q G++ TS F FK + G+TP Y H Sbjct: 283 LRRDAAIHLLLNPELTLEDVAQQVGFSETSTFHRAFKKWTGVTPGLYRQLH 333 >UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK40_BACSK Length = 407 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-N 187 FL + + + ++ VY+ +E+ + +L VA L L+ + L K+ K E Sbjct: 289 FLSGTSPLVQEVRHKKEQLAVRVYEYVEAHFFEQPSLQEVADHLFLNAAYLSKRFKEETG 348 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 +S I RM AV L +SQ+++ GY SYFI VFK + MTP + S+ Sbjct: 349 EKFSDYIHRLRMDRAVELLAETNMKVSQIAKKLGYKDASYFIKVFKREFHMTPQEFRSR 407 >UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Thermoanaerobacteraceae RepID=B0K234_THEPX Length = 537 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 4/134 (2%) Query: 113 SEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 ++ ++ + + L ++ K ++ + + + IE + +KD L VA + Sbjct: 395 NDVDKIKFIFINTLKNLFENIKTIN---KEKMDTFIAKIIRFIEDNFNKDITLDDVAKEV 451 Query: 173 CLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 +S K K ++ +T R+ A L + +I +V GY+ +YF + Sbjct: 452 NMSYHYFSKFFKDQTGKNFIDYLTNLRVTKAKELLEDETVSIKEVCYKVGYSDPNYFSKI 511 Query: 232 FKDFYGMTPLHYVS 245 FK GMTP Y S Sbjct: 512 FKKATGMTPTEYRS 525 >UniRef50_C6CSY2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSY2_PAESJ Length = 533 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 LS +++ N +S+ + ++ +D L +A+ + PS L Sbjct: 397 HAYVAELSAAIEAHIRARASSSDASNPMSE-IVAYLDGHYFEDVGLIDMATRYHMDPSYL 455 Query: 180 KKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 ++ K+ ++ + +T RM A L + +S +++ GY + YF VFK F G Sbjct: 456 SRQFKAATGVNFIEYVTRKRMEKACELLRESDRKVSDIAELVGYENQRYFSQVFKKFTGQ 515 Query: 239 TPLHYVS 245 TP + Sbjct: 516 TPSEFRE 522 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 137 SLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITT 196 +++ + D + Q+IESD DW L+ A +S + L+++L +ENT +S+I++ Sbjct: 154 AVLGEGQSPRLEDRLRQMIESDPAFDWTLAHAARSFNMSEATLRRRLAAENTGFSEILSD 213 Query: 197 CRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV--SQHRERTVA 253 RM A+ + ++QV+ GY+S S F + FK+ +G++P H S+H ER A Sbjct: 214 TRMNRALGLIHTTTLPMAQVALEVGYDSPSQFSARFKERFGVSPRHVRSGSEHFERIGA 272 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 78/227 (34%), Gaps = 12/227 (5%) Query: 28 ISLKANHMALLNCENNIIDVSSLNN------TLVAHISHDIIKDYLRFLNKDLSQIPVWQ 81 I L + + NN + N+ ++ H + + D L L P Sbjct: 109 IELSRDDSSAFITFNNTFNRFDANHFLEESLLVIWHRTACWMVDQLIPLKSARFSYPAPP 168 Query: 82 RSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMY 141 + T F A PA+ L FL L Sbjct: 169 HQSA--YKAIFNTELHFDQAVTQLEFPAKFLELPVAQSE---RTLVEFLRESPADLLARP 223 Query: 142 MLRNCVSDSVYQIIESDIHKDWNL-SMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMR 200 + + +I DI D VA L LSP L+++LK E TSY ++ R Sbjct: 224 AKDESYAGRIRALIGYDIECDLPAFESVAEQLGLSPQTLRRRLKEEGTSYQELKDLIRRD 283 Query: 201 YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 A++ L +I +++Q G+ S F FK + G+TP Y H Sbjct: 284 IALHFLNKPQYSIHEIAQKVGFAEPSAFHRAFKKWVGLTPSDYRQTH 330 >UniRef50_UPI0001788A43 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788A43 Length = 516 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 1/135 (0%) Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 E + L+ + + L + + I++ + +L VA + +S Sbjct: 382 EEVKKLVLQGFHALREEAMRHPVPESTLHERIVLQAVRYIKARFTEPISLQEVADEVAVS 441 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 + + K ++ + R++ A L + +V+ G+N YF +FK Sbjct: 442 RNYFSELFKRVTGHNFIDYVIDLRLKRAKELLSTTSLRVYEVADRSGFNDVKYFSKLFKK 501 Query: 235 FYGMTPLHYVSQHRE 249 GMTP Y QHR+ Sbjct: 502 MVGMTPAEYQGQHRK 516 >UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Thermoanaerobacter RepID=B0K3C5_THEPX Length = 530 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-N 187 FL+ + N + + V + I + K+ L ++ + L+P + K E Sbjct: 408 FLEEISDLFAGAKRNENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSRLFKKEVG 467 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 +Y++ +T R+ A L IS++++ GY +YF VFK G++P + Sbjct: 468 CTYAEYLTRIRIEAAKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISPSEFRK 525 >UniRef50_C6D8S9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D8S9_PAESJ Length = 534 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 1/122 (0%) Query: 128 RFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSE 186 +F + + V IE ++ D N +A + L+P+ L + K Sbjct: 410 QFAAKASDCLVKQGKDVSNTIAKVQGYIEENLQHDLNREEIARHVYLNPAYLSRLFRKET 469 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 S + + RM ++ EL + IS ++ S GY S S+F FK GMTP Y + Sbjct: 470 GKSLTDYMVDRRMFRSIRELKLTNHKISDIAISVGYASFSHFSKQFKKSTGMTPQDYRKK 529 Query: 247 HR 248 ++ Sbjct: 530 YQ 531 >UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N5F0_9GAMM Length = 339 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 10/215 (4%) Query: 41 ENNIIDVSSLNNTL-VAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFR 99 EN + L + HI+ +++ ++ F K L+ A F Sbjct: 117 ENQYGVLKWLPHYQCSRHITEEVVTSWVAFAKKALA--VKLSPHAIHFTHEQEADKSEFE 174 Query: 100 VAAQHSMMPAETESEKER-TRALLFTVLSRFLDSKKFVS-----LMMYMLRNCVSDSVYQ 153 V + + + T + E TR + ++ D K ++ +++ +N ++ V Q Sbjct: 175 VFFECPVYFSSTFTGIEFDTRIIEMPLMGHSPDLLKVLTGYADLIVLKKQKNAANEVVTQ 234 Query: 154 I-IESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKN 212 I+S HK L VA L +S L++K K + T++ I+ R YA L+ Sbjct: 235 FVIDSLQHKVPTLQDVAEHLGVSARNLQRKFKQQGTNFKTIVDDIRKEYAFTYLLQTNYK 294 Query: 213 ISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 ++ ++Q G++ S F FK + GMTP Y H Sbjct: 295 MTYIAQILGFSEQSVFQRAFKRWTGMTPGEYRIHH 329 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 89/220 (40%), Gaps = 12/220 (5%) Query: 35 MALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLT 94 M L +N + + S + +S D++ Y+ + ++ + + Sbjct: 115 MLLEEHKNQVSLIFSP---MTFELSRDVLGTYMNAMIWRCMKMAAPSALEPLKVEMAAPQ 171 Query: 95 PDV--FRVAAQHSMMPAETESEKERTRALLF------TVLSRFLDSKKFVSLMMYMLRNC 146 PD F A + ++ + ++ L + +L+ + Sbjct: 172 PDNQHFETAMGCKIAWSQNRTAMVFDKSQLLEPWQMRNTEIIRANEPMLDNLLKSLRTGD 231 Query: 147 VSDSVYQIIESDIHKDW-NLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNE 205 ++ V + + K+ + +A L +SP L+++LK+ENTSY +++ RM+ A Sbjct: 232 IAGKVRWQLLDALDKELPSEEAIAQALHMSPRTLQRRLKAENTSYGEVVQQTRMQLAQQL 291 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 L + ++V +CG++ S F FK + G TP Y S Sbjct: 292 LASPDISATEVGLACGFSDASAFTRAFKRWTGTTPSDYRS 331 >UniRef50_A9KJM4 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KJM4_CLOPH Length = 517 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELM 207 V + +++ +D L VA L +SP + K + +Y +T R++ A L+ Sbjct: 415 RKVLRYVDTHYDEDITLEEVAGILNISPQYFSRIFKEKMGVTYVDYLTNIRIKKAQEWLI 474 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 KNI ++ GY +YF VFK G+TP +V +R Sbjct: 475 YSDKNIQEICYMVGYKDPNYFSRVFKKTVGVTPKQFVENKGKR 517 >UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PMJ1_9FIRM Length = 285 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 38/251 (15%), Positives = 82/251 (32%), Gaps = 14/251 (5%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 ++ L + G +L+ + L N + Sbjct: 39 VRDHYLIHLVVAGKGVYQVGGVSHTLQEGDLFLAK----------PNQLITYAADETDPW 88 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTL--PCLTPDVFRVAAQHSMMPAETESEKERTR-AL 121 +Y + Q++ L C P R A + + E + E Sbjct: 89 EYYWVGFNGACANKLVQQTPFSDLHPVHHCKDPQAVREALYNIYLSRGPEPQCEALMTGY 148 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 L+ ++ + + + + S + I+ + D ++ +A + +S S L + Sbjct: 149 LYIFMAHLMKEARDAMPNVGSSSSQYVLSAIKYIQFNYSHDISVDDIAKAVGVSRSHLYR 208 Query: 182 KLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 + S +T R+ A + L +I++++ S G+ YF VFK G+ P Sbjct: 209 VFMANVGQSPIDYLTNYRISEACSLLKNSNLSIAEIAVSVGFFDQFYFSRVFKKVKGVPP 268 Query: 241 LHYVSQHRERT 251 Y++ + Sbjct: 269 SKYLATLEKEQ 279 >UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZS6_GEOSF Length = 324 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 56/103 (54%) Query: 143 LRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYA 202 R C+SDSV I++ D++ W L VA L +S +++KL+ E ++ +++ R+R A Sbjct: 215 QRECLSDSVEAIVKQDLNHKWTLKSVAQSLNMSERSMQRKLQDEGQTFRKLLNNARIRTA 274 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 + L+ +++++ G++ S+F FK + G P Y Sbjct: 275 ESYLLNSQLSLTEIGYLTGFSDYSHFSKEFKRYSGTNPSQYRK 317 >UniRef50_C6D5X4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5X4_PAESJ Length = 533 Score = 126 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 122 LFTVLSRFLDS--KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 LF L S + R VS++ + + ++ K +L VA+ L ++PS Sbjct: 408 LFEWFHTQLQSYIAAREEALPVSKRREVSEA-RKYVSMNLGKRISLEEVAAHLHMNPSYF 466 Query: 180 KKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 + K E ++ + +T ++ A L +S++ + GY++ SYFI FK G+ Sbjct: 467 SRFFKKETGLTFIEYVTDQKIERAKELLDQTNYYVSEICEMLGYDNQSYFIKTFKAQTGL 526 Query: 239 TPLHYV 244 TP Y Sbjct: 527 TPTEYR 532 >UniRef50_B5CYJ6 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CYJ6_9BACE Length = 956 Score = 126 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 94/227 (41%), Gaps = 9/227 (3%) Query: 33 NHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPC 92 N+ A+ N + N + + + ++P + ++ I Sbjct: 722 NYTAVGQHTVNYKHLPHGNYVFEVKATDGYGIWSDKITRLHIERLPAFYQTGWAITLYIL 781 Query: 93 LTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSK-------KFVSLMMYMLRN 145 L + + + + ++E+ + + +L+ K + + L Sbjct: 782 LLAAGVFLGLRFYLRRMKLKNEELYADSTELMKMRSYLNEKSVPQAEVRISDMEFAKLDE 841 Query: 146 CVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAV 203 + +++ + +E ++ + D+++ +A + +S S L +KLK+ + + I +M++A Sbjct: 842 ILLENILKAVEENLSEPDFDVQHLAQKVNMSRSTLTRKLKAITGLTPLEYIRRVKMQHAC 901 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 L +++V+ + GY + YF + FK+ YG+TP Y Q +R Sbjct: 902 RMLEDTRATVNEVALALGYYNRKYFTTCFKEEYGITPSEYQKQQGKR 948 >UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETL2_9FIRM Length = 517 Score = 126 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 1/109 (0%) Query: 139 MMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTC 197 M + N I + +L VA L ++P L E ++S + Sbjct: 409 MKEDISNYTIKRAINYIREHYKEGISLEEVAGRLGITPEYLSTLFNREMGENFSTFLRKF 468 Query: 198 RMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 R+ +A L + ++++ GY YF VFK+ G++P Y Q Sbjct: 469 RISHAKRLLKGTDMKVYEIAEEVGYTDPKYFARVFKEELGISPGDYRQQ 517 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 2/115 (1%) Query: 134 KFVSLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKSE-NTSYS 191 ++VSL + D ++I+ + + +L+ +A L ++P+ L KSE ++S Sbjct: 249 EYVSLTKNSKNRKLIDEAIKLIQENYSDLNISLNSIAEKLYITPNYLSTLFKSEMGVTFS 308 Query: 192 QIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 +T CR+ A L I +V+++ GY YF VFK+ G TP Y + Sbjct: 309 DYLTACRIEKAKELLKDVKVKIYEVAEAVGYTDQHYFSKVFKNITGFTPKEYREK 363 >UniRef50_A7VU71 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VU71_9CLOT Length = 289 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 15/201 (7%) Query: 58 ISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKER 117 IS +++ L K + A L P D+ RV + + EKE+ Sbjct: 87 ISPEVLIILLSAHKKFEYVHEAIKEQAFDYLLKPTREEDIKRVFGR----ALKVLEEKEK 142 Query: 118 TRALLFTVLSRFLDS---------KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMV 168 +A L++ + R + ++ + + D V + + + + L + Sbjct: 143 NKA-LYSEMKRKIKKYGSQITVKAQENSADSSSEIYTDTMDKVIKYVNENYTLEIGLQEI 201 Query: 169 ASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 +S LSP L + K ++ I+ R++ A LM IS+V++ GYN + Y Sbjct: 202 SSKFFLSPDYLSTQFKVKTGKNFKDYISNLRIQKAEELLMCSEFKISEVAELMGYNDSGY 261 Query: 228 FISVFKDFYGMTPLHYVSQHR 248 FI VFK+ G TP + R Sbjct: 262 FIKVFKNKLGCTPSQFRESKR 282 >UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NUZ5_BACSE Length = 305 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 +AL +V R L S + N D + I S+ + L +A ++ S Sbjct: 174 LQALAVSVPRRMLASPCYYEKFPTA-GNKRIDKIISFINSNYTRSLKLDEIAEMANMNSS 232 Query: 178 LLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 + K + ++ Q + R+ YA L + ISQ++ CG++S +F FK Sbjct: 233 AFCRFFKDATGKTFLQYVADMRIGYACKLLTIGDMEISQIAVECGFDSIPHFNRTFKQLT 292 Query: 237 GMTPLHYVSQ 246 G+TP Y +Q Sbjct: 293 GLTPTQYRNQ 302 >UniRef50_A4CGA1 Sensor protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CGA1_9FLAO Length = 969 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 31/261 (11%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 +PCI+L+ + R G+ L+ + L D + HI ++ Sbjct: 716 APSRPCILLVEDNADLRRFVGE---VLQEKYRVLYAE-----DGFQGERMAIEHIPDVVV 767 Query: 64 KDYLRFLNKDLSQIPVWQR-----SATPILTLPCLTPDVFRVAAQHSMMPAETESEKERT 118 D + KD ++ + S PI+ L ++ AE K Sbjct: 768 SDVM-MPRKDGYELCHALKTNTKTSHIPIILLTARAGQENKMEGLFQG--AEAYLTKPFE 824 Query: 119 RALLFTVLSRFLDSKKFV-------------SLMMYMLRNCVSDSVYQIIESDIHK-DWN 164 L + + +K + L + L + V IES + + + Sbjct: 825 ARELLVRIRNLMGRQKALWEKMQHSSLVLSGELDLPSLDDAFLKKVGSAIESHLDSAELS 884 Query: 165 LSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 + +A + S + L +KLK+ S +Q+I R+ A L +S+V+ S G++ Sbjct: 885 VEFLAQQVGFSRAQLHRKLKALTGKSPNQLINEVRLEKARLLLQSRSATVSEVAYSVGFS 944 Query: 224 STSYFISVFKDFYGMTPLHYV 244 + SYF F++ YGMTP ++ Sbjct: 945 NLSYFTKRFRERYGMTPSAFI 965 >UniRef50_C6CVB2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVB2_PAESJ Length = 542 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 81/218 (37%), Gaps = 17/218 (7%) Query: 29 SLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPIL 88 L A + + I L +S +I+ Y I + + +L Sbjct: 333 LLDAGRFDDVETKIRHIFRDMLETGGEQDMSEQLIEAYHVLAGAFSYIIHKNGKLLSSVL 392 Query: 89 TLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDS-KKFVSLMMYMLRNCV 147 + L + T A L R L ++ + + + Sbjct: 393 SPEALKF---------------FHAPAYTTAAQLMEWSIRILQGIREDADQELKDNHSTI 437 Query: 148 SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNEL 206 +V I++++ KD +L +A + L P L K K+E ++ + RM A L Sbjct: 438 VRAVRSFIDANLAKDVSLPAIADHVHLHPVYLSKIYKAETGEPLTEYVYRLRMEKAAFLL 497 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + ++S+ GYN+T+YFI VFK F+ +TP Y Sbjct: 498 RTTPSKVFEISEIVGYNNTAYFIRVFKKFFDVTPQEYR 535 >UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM0_9FIRM Length = 248 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 7/233 (3%) Query: 17 DVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQ 76 ++ + G+ ++ H + D L++ I D+ L + L Sbjct: 9 EIILVTGGRGSFNIDTGHYLASPGDVLFFDSGILHDETT--IDGDLATSCLGVSDFQLPG 66 Query: 77 ---IPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSK 133 + R P L+L D R ++ A L +L + + Sbjct: 67 RRANEMVGRLYAPQLSLDA-QFDAVRTLFHTAVQLALAGDAPCVLDQLTCAILCKLDEEL 125 Query: 134 KFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQ 192 + + +V I++ + L +A+ L +P L + S Q Sbjct: 126 ARHGQPPRPQQESLGLTVKAYIDAHYRESITLQSIAAELNFNPYYLAHAFREHIGYSPMQ 185 Query: 193 IITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 I R+ A N L+ ++I++++ SCGYN+++YF SVFK GMTP Y Sbjct: 186 YIIRRRIGEAQNLLIGTDRSITEIAFSCGYNNSNYFQSVFKRLVGMTPGQYRR 238 >UniRef50_Q2S2I5 Transcriptional regulator, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2I5_SALRD Length = 261 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 102/257 (39%), Gaps = 14/257 (5%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI-IDVS----SLNNTLV 55 M + + L + + V G+E ++++A ++ I +D +V Sbjct: 1 MSLRAPHLTYYGLVDGTARVDVEGEEGLAVEAGESLVVPPLQTITVDFPAAHEDPARYVV 60 Query: 56 AHISHDIIKDYLRFLNKDLSQIPVWQ---RSATPILTLPCLTPDVFRVAAQHSMMPAETE 112 I ++ L + D+ P Q R +P + RV + + E Sbjct: 61 LRIDRSQVRSILDRVASDVPSGPAVQDGGRDDPAYFHVP-ENEGIARVLNMVAYLFREDP 119 Query: 113 SEKERTRAL-LFTVLSRFLDSKKFVSLMMYMLRNCVSDSV---YQIIESDIHKDWNLSMV 168 ++R L +L + L + L+ + RN + + Q I+ ++ + ++ + Sbjct: 120 PNRDRLIDLNAMELLIQMLQTASRPLLVGELPRNTSAGGLAAAVQYIQDNLDRHISIDEL 179 Query: 169 ASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 C+S S + E S + IT R+ A L ++ VS + G++STS+ Sbjct: 180 VEEACMSKSSFYRHFSDEFEMSPLEYITRERVVRARELLADSDNTVTNVSHALGFSSTSH 239 Query: 228 FISVFKDFYGMTPLHYV 244 FI +FK+ G+TP Y Sbjct: 240 FIDMFKEHEGVTPKQYQ 256 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 126 bits (317), Expect = 6e-28, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 137 SLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQII 194 ++ + + Q I+ + D L VA L +SP L + +K E S+ ++ Sbjct: 285 QMVEESRLSPIVRRARQYIQKHFSQSDLTLESVAEFLNVSPVYLSRMIKQELGISFIHLL 344 Query: 195 TTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 T RM A L+ I ++++ GY++ YF + FK G++P Y Sbjct: 345 TKIRMEKAAELLLSTELPIHEIAERVGYDTQHYFSTAFKKAMGVSPNQYRR 395 >UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHL9_9FIRM Length = 254 Score = 126 bits (317), Expect = 6e-28, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 1/103 (0%) Query: 145 NCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAV 203 N + Q +E L ++ L LSP+ L + K + + +T RM A Sbjct: 151 NLLVQKAIQYVEVHYGGRITLKDMSEELHLSPNYLCELFKRHTGKNLMEYVTEYRMMKAR 210 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 N L +S V++ GY YF S FK YGMTPL Y ++ Sbjct: 211 NYLNHVEYKVSDVAEMVGYKEAKYFSSTFKKMYGMTPLEYRNK 253 >UniRef50_UPI0001C362BB response regulator receiver protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C362BB Length = 482 Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 1/106 (0%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSENTSYSQIITTCRMRYA 202 R+ + D+V + I++ +D NL+++A+ LSP+ L +K ++ S + R+ A Sbjct: 375 RSEIVDNVIRYIKNHYKEDINLNVLANEFFLSPAYLSRKFSQTTGVSIMSYLEDYRINVA 434 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + L ++IS+++ GY +YF +FK G+TP + + Sbjct: 435 TDLLKGSERSISEIADQVGYYDANYFTKIFKKVKGITPKEFRKMSK 480 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 61/110 (55%) Query: 137 SLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITT 196 +++ + + + VY II S + W L+ VA + +S S LK+KL E TS+S I + Sbjct: 197 EIILSSAQITLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLS 256 Query: 197 CRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 RM A L + N++ V+ CGY+STSYFI FK ++ TP ++ Sbjct: 257 ARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFIKM 306 >UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecalis RepID=C2H3H7_ENTFA Length = 493 Score = 126 bits (316), Expect = 8e-28, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 4/197 (2%) Query: 59 SHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFR-VAAQHSMMPAETESEKER 117 I+ L + LSQ ++ L + + E Sbjct: 296 DMQTIQRELDAIFNQLSQQHATPEYVRYVVFLLFSDISRQYPTVLEENYEKIVEEIRASN 355 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 L+ ++ + L K + VS +V + IE ++ NL VA L L+PS Sbjct: 356 NLNTLYALMQQVLAEVKNKPKIKK-YSESVSQAVER-IEQGYLEELNLKTVADELHLNPS 413 Query: 178 LLKKKLKSENT-SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 L + K E S+SQ + R ++A L+ I+++S+ G+N+T+YF +FK Sbjct: 414 YLGQIFKKETKRSFSQYLNQVRTKHAQKLLLYTDDTINEISEKVGFNNTNYFSKMFKKLN 473 Query: 237 GMTPLHYVSQHRERTVA 253 G+TP + Q++ Sbjct: 474 GITPKEFREQYQSNYAG 490 >UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BHZ4_TERTT Length = 350 Score = 126 bits (316), Expect = 8e-28, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDW-NLSMVASCLCLSPSLLKKKLK 184 L FL + + + L+ ++ V I++ ++++ + ++ L +S + ++++L Sbjct: 223 LMAFLSTAPYHLVTQDPLKLSFTERVRNILKREVNRSIPSAEQLSEMLNMSVTTMRRQLS 282 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 E TSY ++ CRM A++ L + + +++ G++ S F FK + G TP Y Sbjct: 283 KEGTSYQKLKDECRMEVAIHYLACAELSNADIAEKLGFDEPSAFFRSFKKWTGQTPGEYR 342 Query: 245 SQH 247 Q Sbjct: 343 QQQ 345 >UniRef50_C6CT15 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT15_PAESJ Length = 520 Score = 126 bits (316), Expect = 8e-28, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 10/155 (6%) Query: 93 LTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVY 152 LTP V + TE KER + LL + R ++ + N V ++V Sbjct: 373 LTPPGVGVYQSVADFFNLTEL-KERIQHLLELSMYR-------LASLRKEGGNRVIETVK 424 Query: 153 QIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMD-G 210 Q+I+ D KD L+ ++ + L+PS L K E + +Q + RM A L Sbjct: 425 QLIQQDYDKDLELTELSEKVFLNPSYLSTLFKQETGLTITQYVLQLRMMKAKELLKKRLD 484 Query: 211 KNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 + +V + GY + YF VFK G+TP Y + Sbjct: 485 LKVYEVGEQVGYPDSIYFNKVFKKMVGITPKEYRN 519 >UniRef50_C6CT83 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT83_PAESJ Length = 472 Score = 126 bits (316), Expect = 8e-28, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 2/107 (1%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYA 202 +N + + Q + ++ +L ++ ++PS + + K E ++ I+ R+ +A Sbjct: 366 KNRTFNQILQYVTDHFREELSLQGLSEQFFMNPSYISQLFKKEVGETFVGYISQLRIAHA 425 Query: 203 VNEL-MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 L D +I ++++ GYN YF +FK G TP Y S+ + Sbjct: 426 CKLLDENDDYSIHEIAEKIGYNDYFYFARLFKKMTGKTPTQYRSERK 472 >UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABU8_9CLOT Length = 412 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 2/138 (1%) Query: 111 TESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCV-SDSVYQIIESDIHKDWNLSMVA 169 + + L + LDS +N V I ++D NL +A Sbjct: 274 YKISNIKNIEDLSYWVIHMLDSFTQNVFNFNESKNPVLIQKCISYINEHYNEDINLETIA 333 Query: 170 SCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYF 228 + + L+PS K E S+S + R+ + L +I +++ G+ SYF Sbjct: 334 NIVHLNPSYFSSIFKKEVGVSFSNYLNKIRIEQSKLLLKNTDSSIVEIALEVGFEDQSYF 393 Query: 229 ISVFKDFYGMTPLHYVSQ 246 VFK+ MTP Y Sbjct: 394 SKVFKNLTKMTPKQYRQN 411 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 2/128 (1%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDW-NLSMVASCLCLSPSLLKKKLK 184 L FL + L N + + ++ D+ + + +AS + +SP L+++LK Sbjct: 269 LKEFLKTSPADLLARPDDSNTYTSKIRALVGRDLSQQMPDFEFIASQINVSPQTLRRRLK 328 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 ENTS+ +I R A+ L +I++++ G+ S F FK + G+TP Y Sbjct: 329 EENTSFQEIKDNMRRDAAIYYLSRREMSINEIAFKVGFTEPSTFHRAFKKWTGVTPGDYR 388 Query: 245 SQ-HRERT 251 RER Sbjct: 389 ESVLRERQ 396 >UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLM9_9FIRM Length = 516 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYA 202 + + + + I+ ++ NL+ +A + LSP L K E +Y+ + RM +A Sbjct: 402 SSRIVQEIKRYIQEHYAENINLNALADQVYLSPKYLSDLFKRETGENYTSYLLYVRMEHA 461 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 LM I +V++ GY S FI VFK G+TP Y +Q Sbjct: 462 KKYLMQFDLKIYEVAELTGYASPKQFIRVFKKEVGVTPGEYRNQ 505 >UniRef50_C6D3S3 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3S3_PAESJ Length = 538 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Query: 146 CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVN 204 V + I + ++ + +AS + L+P L + K E S S + R+R A Sbjct: 426 SVVEQAKTYIHQHLAEEISREDIASHVYLNPDYLTRIFKRETGMSISDYLLQQRLRIAAE 485 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERT 251 L +S V+ GY + S+F +FK + G+ PL Y R Sbjct: 486 LLANTDLAVSAVASRIGYANFSHFSRIFKKYMGINPLEYRQSQESRQ 532 Score = 39.9 bits (92), Expect = 0.085, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 200 RYAVNEL---MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA 253 A + + + + ++ Y + Y +FK GM+ Y+ Q R R A Sbjct: 429 EQAKTYIHQHLAEEISREDIASHV-YLNPDYLTRIFKRETGMSISDYLLQQRLRIAA 484 >UniRef50_D2LTH2 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTH2_BACS4 Length = 414 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 86/213 (40%), Gaps = 7/213 (3%) Query: 41 ENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRS----ATPILTLPCLTPD 96 ++ + + N V ++I ++ L I + S T T+ Sbjct: 200 ISHHLLKRDVENISVFSQDDELITICFEKNDQKLDDILFKELSDNIHHTLAFTIHFAIST 259 Query: 97 VFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIE 156 + + S + +T + +R + TVL FLD + + + ++ + I+ Sbjct: 260 LQNNLSNISSVYKDTSALMSESRGIGKTVL--FLDQHSDFENEVTHQHHWIIENAKKYIQ 317 Query: 157 SDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQ 215 +KD S +A ++P+ K E S+S+ + + R+ A L+ + + Sbjct: 318 EHFNKDVKASELAEKHFITPNYFSVIFKQETGVSFSEYLNSIRIEKASELLLSTANKVFE 377 Query: 216 VSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 +++ GY YF+ +FK G+TP +Y ++ Sbjct: 378 IAEYVGYKEYKYFVQIFKRHTGVTPTYYRKINK 410 >UniRef50_C6CVD2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVD2_PAESJ Length = 536 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 5/148 (3%) Query: 103 QHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKD 162 H+ ET + L + ++ M + + V I ++++ Sbjct: 391 NHACSSVETATRSVVQFKLWVSCIA----EAAGSLFTRTMTVSPIVQKVKAYIAEHLNEE 446 Query: 163 WNLSMVASCLCLSPSLLKKKL-KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCG 221 + +AS ++P+ L + K + I RM A L ++IS+++ Sbjct: 447 LSREQLASIAFVNPAYLSRLFRKETGMVLTDYILKERMERAAELLATTDRSISEIADGLS 506 Query: 222 YNSTSYFISVFKDFYGMTPLHYVSQHRE 249 Y + SYF +F+ +G+TP Y +R+ Sbjct: 507 YGNFSYFARLFRKVHGVTPQEYRKPYRK 534 >UniRef50_Q5WCV1 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCV1_BACSK Length = 293 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 1/137 (0%) Query: 109 AETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMV 168 A ER LL +LS K + ++ + IE + + +NLS++ Sbjct: 147 ASINERAEREELLLIQLLSYMQHQLKGRPPTKKLRHIHYAERIMGWIEDHLTEPFNLSLL 206 Query: 169 ASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 A L LS S + K + E +S + +T RM+ A + L I ++SQ G + SY Sbjct: 207 AQDLYLSKSYVSKVFRRETGSSITDYLTARRMKEACHLLQTTSLPIDEISQRIGLTNVSY 266 Query: 228 FISVFKDFYGMTPLHYV 244 FI +FK TP Y Sbjct: 267 FIQMFKRKTNATPHQYR 283 >UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA55 Length = 275 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 87/236 (36%), Gaps = 12/236 (5%) Query: 13 LTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNK 72 + + + W+++ G E + + L+ + + SH Sbjct: 49 ILDGEGWVKI-GDEELYPVPGQLVLMPARTRQSYSVISGRPYLKYWSH------FSATVG 101 Query: 73 DLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR-FLD 131 D L+ P +F+ ++T + + R ++++ +LSR F Sbjct: 102 DSDVFSWLNVPHCYDLSGNAEMPALFQQ--LVDAHRSDTLAARLREKSVMLDILSRVFEH 159 Query: 132 SKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSY 190 + + + V Q I++ +H++ L +A L L P+ K K + Sbjct: 160 QQPQIHADKMEDMGRLH-KVQQYIKNHLHEEITLEQMAGTLHLHPNYFIKYFKRHFGITP 218 Query: 191 SQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 + ++ RM A L +I +++ + G+ S +YF F+ G +P Y + Sbjct: 219 QKYLSLKRMEQAKLMLRTTSLSIKEIADATGFESANYFSKTFRKEVGYSPSEYRNN 274 >UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C0B Length = 288 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 96/248 (38%), Gaps = 22/248 (8%) Query: 15 EKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNN-TLVAHISHDIIKDYL--RFLN 71 KD RV + + + N + + +D ++ LV +I+ ++ D L Sbjct: 52 IKDRSYRVRAGDLVFVDRNAV------HKTLDSGRPDHDRLVLYINPELFADLAVPPELA 105 Query: 72 KDLSQIPVWQRSATPILTLPCLTPDVFRVAA---QHSMMPAETES----EKERTRALLFT 124 + L + W PIL LP + + M+ + S LLF Sbjct: 106 EGLKEPFGWD---VPILRLPSPASEAVERMVGDMVNEMIHPQAGSSWLLRHRTVELLLFA 162 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 SR L S + + + +V + + + + L VA +SP L + K Sbjct: 163 YRSRHL--GMVRSADTEPVLHPKTQAVVRYLNDNYRQALTLPEVAEAFRISPHYLSRLFK 220 Query: 185 SE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 ++S + R++ A L +I+ ++ G+++ S+F +FK ++P Y Sbjct: 221 QTTGFTFSDYLNLLRVKEAQRLLRESDDSITDIAWRSGFSNFSHFGKMFKRTVQLSPRAY 280 Query: 244 VSQHRERT 251 Q+R R+ Sbjct: 281 RQQYRMRS 288 >UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWY8_9BACL Length = 293 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 94/254 (37%), Gaps = 18/254 (7%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDI 62 + S + C + KD R+ + + + N + + +S + ++ + ++ Sbjct: 41 LVSGERCYFI---KDQIYRIGAGDLVLIPVNVLHKTSPSGK---LSQPHERILVNFRTEV 94 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVF-----RVAAQHSMMPAETESEKER 117 + L ++L Q+ + P+L L + R+ A+ E + Sbjct: 95 VSALLPGREEELEQLF----AKYPVLRLSAEEQQLVQQLLARMLAEQKQQAGGYEEYCQL 150 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSD--SVYQIIESDIHKDWNLSMVASCLCLS 175 A L L R +++ + + V + I + ++ +LS +A+ LS Sbjct: 151 LLAELLLNLLRMANARPNHDGEEGGGKRPYREIAEVARYINAHYDENLSLSDLANRFHLS 210 Query: 176 PSLLKKKL-KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 P L + + I R+ A L +++++ GY S ++F VFK Sbjct: 211 PYYLSHLFPRVTGLTLVAYINRVRIEEACALLRETELPVTEIAYRVGYQSGTHFGRVFKK 270 Query: 235 FYGMTPLHYVSQHR 248 ++P Y + R Sbjct: 271 AKAVSPQSYRREQR 284 >UniRef50_B3CBW2 Sensor protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CBW2_9BACE Length = 1319 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 17/186 (9%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT----VLSRFLDSKKF 135 S P++ L + M A+ K + ALLF +L+ L +K Sbjct: 1134 INMSNIPVILLTARISKSAEMTGY--EMGADAYIAKPFSLALLFNRVEHLLALQLQRQKE 1191 Query: 136 VS---------LMMYMLRNCVSDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS 185 L + L + + + IE ++ + +++++ ++ + +S L +KL++ Sbjct: 1192 FQQNIEVNPQKLTITPLDEDLLNRILACIEKNLSNSEYSIADLSKDVMMSRMNLYRKLQA 1251 Query: 186 -ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 S + + T R++ A L+ + I +V+ + G+N+ SYF VFK+ +G+TP Y+ Sbjct: 1252 ITGQSPTDFVKTIRLKKAAQLLLENRYTIVEVAYTVGFNTPSYFTRVFKEQFGITPTQYL 1311 Query: 245 SQHRER 250 + + Sbjct: 1312 EKSGQN 1317 >UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAS3_9FIRM Length = 271 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSEN-TSYSQIITTCRMRYAVNE 205 V D V + +E + D +L V+ L +SP+ L + K ++ +T R+ A Sbjct: 161 VMDHVRKYMEDNYMADLSLDSVSEILHISPAYLSAQFKKYQKMNFLDCLTELRINAAKEL 220 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 L ++ ++V+ GY SYF FK GMTP Y + Sbjct: 221 LADPFRSAAEVASMVGYEDASYFARAFKKRTGMTPTQYRKE 261 >UniRef50_A7VR09 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VR09_9CLOT Length = 568 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 18/174 (10%) Query: 93 LTPDVFRVAAQHSMMPAETESEKERTRALL-------FTVLSRFLDSKKFVSLMM----- 140 L P + + AA++ + P + ++E L F L R DS +++ Sbjct: 387 LEPALAKDAAKNFLYPLSIQLKEEGIPPLAALTLDEAFLELDRAEDSAALRDVLLKTTRS 446 Query: 141 -----YMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQII 194 + + + + I I +D +L +A LSPS + K++ + + I Sbjct: 447 LSAVLHGTSSDFVERTKEYIFEHIGQDLSLEDIAEHFYLSPSHFSRTFKAQAGETLIRFI 506 Query: 195 TTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + C+M YA L I V + GY S +F +FK + GM P Y + Sbjct: 507 SRCKMEYAAQLLSNTNLKIYDVCEQVGYKSLRHFNKLFKAYTGMQPSGYRQRMH 560 >UniRef50_C6D7J5 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7J5_PAESJ Length = 544 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 20/219 (9%) Query: 29 SLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPIL 88 S+ A + CE + + + +II LRF +K+ IPV S+ +L Sbjct: 340 SVAAGELMDRLCEQSEKALPHIQAEQWLVFLQEIINVTLRFAHKE--GIPVQGVSSEKLL 397 Query: 89 TLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVS 148 L + + + K L V+ L+ N V Sbjct: 398 DLSFVH---------------DYRTLKSLFEYLALWVVH--LNDVYSKQTHQSSQENAVF 440 Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELM 207 + + IE +I ++ +L MVA +PS L + KS+ N +Y +T R+ YA L Sbjct: 441 NQIKGFIEKNIDQELSLQMVADHFFYNPSYLSRLFKSKLNQNYLSFVTEIRIDYAKKLLR 500 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 + ++ V CGY S +F+ +F+ G TP Y Q Sbjct: 501 DTNRLVTDVCTMCGYKSYKHFVKMFRLVAGTTPTDYRRQ 539 >UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8J9_9FIRM Length = 351 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 4/149 (2%) Query: 106 MMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNL 165 +M A E E + L + + + ++ + + V I + ++ + Sbjct: 206 LMSANAEQSSEEIQ---IQELLPQEEHRPQQTGVLPVNPSSVVYPAVVYIRDHLQQEITM 262 Query: 166 SMVASCLCLSPSLLKKKL-KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNS 224 +A LSPS + K S+ I++ R++ A L+ GK+ISQ+++ GY++ Sbjct: 263 KEMADLCHLSPSYFSRTFNKETGESFVNYISSRRIQLAKELLLETGKSISQIAEEVGYDN 322 Query: 225 TSYFISVFKDFYGMTPLHYVSQHRERTVA 253 S+F +VFK G+ P Y S + + + Sbjct: 323 ISHFTAVFKRTEGIPPSVYRSSKKRKKFS 351 >UniRef50_C5CTH9 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CTH9_VARPS Length = 313 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 92/254 (36%), Gaps = 18/254 (7%) Query: 11 VLLTEKDVWIRVNGKEPISLKANHM-ALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRF 69 + ++ +V G A H+ +L +++ + + + L Sbjct: 32 IQVSIHGGSQQVVGGAVRPFTAGHLSFVLPYRVHVVPHPPGARYAIVNFDQGFLWPELAV 91 Query: 70 LNKDLSQIPVW-QRSATP-----ILTLPCLTPDVFRVAAQHSMMPAETESEKE----RTR 119 DL ++P Q P + D R+ + A + R Sbjct: 92 EALDLEEVPAARQPELAPFLFQEYMDFHFGDADFARILGWLDELAALNRERRFGAVGAIR 151 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVS------DSVYQIIESDIHKDWNLSMVASCLC 173 +L +++ + L L++ S V + + + ++ +L+ A+ Sbjct: 152 GILLQLMALACHRHEAPLLAQAALQSGRSAGHDALQRVMRYVREHLAEEMSLNDAAAAAM 211 Query: 174 LSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVF 232 LSP+ L LK ++++++T R+ A L+ I +++ CG+ YF F Sbjct: 212 LSPNYLAHLLKKQTQRTFTELVTERRLERAKELLVTSNARIGDIARQCGFGDAVYFSRRF 271 Query: 233 KDFYGMTPLHYVSQ 246 + G+TP + SQ Sbjct: 272 RLQSGVTPRQFRSQ 285 >UniRef50_D1PFT7 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PFT7_9BACT Length = 1334 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 85/185 (45%), Gaps = 11/185 (5%) Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 L ++++ Q+ Q A + P + R + +++ F Sbjct: 1158 LTAMSREEDQLTGLQSGADAYVVKPFNMDILRRTIINLLNVRRTLKNK--------FIGN 1209 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS 185 R D + + + ++ + + V ++I +I ++D ++ M+A + LS L +++K Sbjct: 1210 ERQSDRQIAIEKDLSP-KDQLMEQVMKVINDNIGNEDLSVDMIAREVGLSRVHLHRRMKE 1268 Query: 186 -ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 N + I R++YA L K IS + SCG+++ + F ++FK+FYG +P Y+ Sbjct: 1269 LTNQTPHAFIRNTRLQYAEKLLSHSNKTISDIMFSCGFSNPASFSTMFKNFYGSSPRDYM 1328 Query: 245 SQHRE 249 HR+ Sbjct: 1329 QAHRK 1333 >UniRef50_A6L4D6 Sensor protein n=8 Tax=Bacteroides RepID=A6L4D6_BACV8 Length = 1467 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 22/190 (11%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFV--- 136 +Q S P++ L D + A M A K ++ L + + L+ +K Sbjct: 1279 FQISHIPVIILTAKGNDEAKTKAIS--MGANAYIIKPFSKDYLVARIEQLLNERKLFRER 1336 Query: 137 ---------------SLMMYMLRNCVSDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLK 180 + + ++Q+IE ++ + D+N+ +AS + LS S Sbjct: 1337 VWQQPEEHKEEQDTYEQFLVKKDVQFIEKIHQVIEENLDNSDFNIDTIASTIGLSRSAFF 1396 Query: 181 KKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 KKLKS + ++ R+ ++ + +IS+++ + G+ + YF F+ Y T Sbjct: 1397 KKLKSLTGFAPVDLVKEIRLNKSIELIKNSDMSISEIAFAVGFKDSGYFSKCFRKKYDQT 1456 Query: 240 PLHYVSQHRE 249 P Y+++ R+ Sbjct: 1457 PREYMNEWRK 1466 >UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2H9_9BACL Length = 535 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 6/156 (3%) Query: 97 VFRVAAQHSMMPAETES---EKERTRALLFTVLSRF--LDSKKFVSLMMYMLRNCVSDSV 151 + R + M+P E E ++ R L +LS L SL + S Sbjct: 375 LLREMRELHMLPREQEEGLWKRLREPMSLKELLSIIVSLIEHARSSLSAKKSTELLMMSA 434 Query: 152 YQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDG 210 I++ + +D+ + +A L +S S K+ ++ + +T RM A L Sbjct: 435 QNYIQNHLGRDFGIEDIADYLGISSSYFCLLFKNHFGETFVEYLTKQRMEMAKCLLRTSE 494 Query: 211 KNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 ++I+Q+ S GY YF VF+ + GMTP Y + Sbjct: 495 RSIAQIGSSIGYQERRYFTKVFQKYTGMTPSDYRQK 530 Score = 43.8 bits (102), Expect = 0.005, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 34/129 (26%) Query: 146 CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL----LKKKLKSENTSYSQIITTC--RM 199 C S+ + + + ++ L + P L K+L+ E S ++++ + Sbjct: 362 CASEKLMHYLLIHLLREM------RELHMLPREQEEGLWKRLR-EPMSLKELLSIIVSLI 414 Query: 200 RYAV---------NELMMDGKN-----------ISQVSQSCGYNSTSYFISVFKDFYGMT 239 +A LMM +N I ++ G +S SYF +FK+ +G T Sbjct: 415 EHARSSLSAKKSTELLMMSAQNYIQNHLGRDFGIEDIADYLGISS-SYFCLLFKNHFGET 473 Query: 240 PLHYVSQHR 248 + Y+++ R Sbjct: 474 FVEYLTKQR 482 >UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVE2_9BACL Length = 215 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSEN-TSYSQIITTCRMRYAVNELMMD 209 + IE + LS ++ +PS L + N +S+ + R+ A L D Sbjct: 113 LLDYIEEHYGEPLTLSSLSRHFHFNPSYLSSYFSAHNDEGFSEYLNRVRIAKAKELLRSD 172 Query: 210 GKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 G IS++ GY+ SYF VFK G++P Y Q Sbjct: 173 GLPISEIGSRVGYSDPSYFTKVFKKQMGLSPREYRRQQ 210 >UniRef50_UPI0001C35C03 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C03 Length = 301 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 12/175 (6%) Query: 84 ATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR------ALLFTVLSR-----FLDS 132 + P+L + +F++ ++ + ++ + A T+L R FLD Sbjct: 122 SPPVLLKQRVIFALFQIMRNFEVLISGNFKKEANLQISSLQKAETLTLLKRSLYAFFLDL 181 Query: 133 KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYS 191 K ++ + + +E+ + NL VA +PS K+ +++S Sbjct: 182 GKELNCQKEGNGRDIMTDCGEYLENHYMDEINLESVAEKYHFNPSYFSTLFKNTYKSTFS 241 Query: 192 QIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 + + RM A L+ + ++ GY +YF+ FK +Y MTP Y Sbjct: 242 EYLIRIRMEKARELLLTTESRVRDIAVLTGYRDANYFVRAFKRYYEMTPEEYRKM 296 >UniRef50_A5ZID7 Sensor protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZID7_9BACE Length = 1358 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 94/238 (39%), Gaps = 28/238 (11%) Query: 34 HMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCL 93 + A+ E I+ + + +++ DI+ Y+ + S PI+ L Sbjct: 1127 YTAVNCKEGYEIEQKQIPDLVIS----DIMTPYMDGIEFTRLSKNNMVTSHIPIILLTAR 1182 Query: 94 TPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVS---------------- 137 + A+ K LL ++ L ++K ++ Sbjct: 1183 VTS--SQVREGYESLADDYIMKPFDPELLVVRVANLLINRKKLAERYGTEMVSINREPQK 1240 Query: 138 ----LMMYMLRNCVSDSVYQIIESDIHKD-WNLSMVASCLCLSPSLLKKKLKS-ENTSYS 191 + + V +II +I +++ + + +S + +K+K+ S S Sbjct: 1241 AKETSVYSAMEEKFMKKVMEIINKNIENPAYSIDQFSEEIGMSRVQVYRKIKAVTGMSPS 1300 Query: 192 QIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 ++I R++ +++ L +++VS CG+N SYF FK YG++P Y+ ++R+ Sbjct: 1301 KLILDIRLKTSLDMLQNTEYTVTEVSYRCGFNEISYFGKCFKTEYGLSPSEYIKKYRK 1358 >UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPI7_HAHCH Length = 333 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLK 184 L + L + L LR VS V I+ + + D VA + +S L +KLK Sbjct: 211 LHQALTRQVEALLQKLSLRRTVSHKVKAIVAKRLSRGDIEAEKVAEKMNMSRHTLYRKLK 270 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 E S+ +++ R A++ L ++S+++ G++ S F FK + G +P Y Sbjct: 271 QEGVSFQELVEQVRKDKALDYLQKGKYSLSEIAFLLGFSELSAFSRAFKRWTGESPASYR 330 Query: 245 SQH 247 SQ Sbjct: 331 SQQ 333 >UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AP83_9BACE Length = 278 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 1/143 (0%) Query: 105 SMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWN 164 + MP E +T F + S +N V + ++ K Sbjct: 132 NQMPDELSMGMVKTLFQEFMIFVLRCKLYGDTSAHEIDAQNSTIQDVATYVYNNYDKQIY 191 Query: 165 LSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 L VA +S S L KK K + + + R++ A L+ +I+ ++ +CG+N Sbjct: 192 LDDVAKQFSISRSYLSKKFKQTTGFGFKEYLLNVRIKEACRLLLETNHSITDIAFACGFN 251 Query: 224 STSYFISVFKDFYGMTPLHYVSQ 246 ++YF F+ G++P Y Sbjct: 252 DSNYFGDAFRRIKGISPNKYRHN 274 >UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM97_9FIRM Length = 283 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 82/237 (34%), Gaps = 9/237 (3%) Query: 11 VLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFL 70 + +TE D VN E + LK + + H + F Sbjct: 48 IYVTEGDTDYEVNAGELLILKNGVHHFGKKKIQ-----KGTKWIFVHFRISADCNASPFY 102 Query: 71 NKDLSQIPVWQRSATPILTLPCLTPDV-FRVAAQHSMMPAETESEKERTRALLFTVLSRF 129 D S + + +A ILTLP V R + +S+ + + L Sbjct: 103 -PDASPLGAYDATAESILTLPKFLDSVSARFEKELKTFIEYAQSDDAYKKWFINQRLFLL 161 Query: 130 LDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NT 188 L S V+ + +SD + + + +I ++ + LS + K E Sbjct: 162 LSS-LAVNTQGFSNNLTLSDRICRYLSDNIGVPFSSENIEKRFYLSYKYMSHLFKKEKGV 220 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 + Q + RM A L +I +++ G++ YF F+++ G +P Y Sbjct: 221 TMQQYHNSVRMDEACRLLCSTLMSIGEIADKLGFSDVLYFSRCFRNYTGKSPSAYRK 277 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 78/180 (43%), Gaps = 15/180 (8%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLM 139 Q P++ L + D R+ Q A++ K LL + + + +++ + Sbjct: 740 LQTCHIPVILLTACSLDEQRI--QGYDGGADSYISKPFNSQLLLSRVRNLIANRRQLRQF 797 Query: 140 MYMLRNCVSDSV-----------YQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKS-E 186 + +++ ++E + + N+ + + +S L +KLKS Sbjct: 798 FGDNQTIEKEAISDLDKGFVSRFKSLVEERMKDAELNVEDLGRNMGMSRVQLYRKLKSLT 857 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 N S ++++ R++ A + L +++++ G++S SYF +K+ +G +P ++ + Sbjct: 858 NYSPNELLRQMRLKKAASLLASSDMTVAEIAYEVGFSSPSYFTKCYKEQFGESPTEFLKR 917 >UniRef50_C6QRS7 Two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRS7_9BACI Length = 269 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 1/110 (0%) Query: 141 YMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRM 199 + V S IE + L VA + +SP L K K E ++ +T +M Sbjct: 143 SIQDGKVIQSALNYIEENYQNGITLEEVAEHVHISPFYLSKLFKKELKMNFVSYVTEKKM 202 Query: 200 RYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 + A L + ++ Y +YF VFK G+TP Y + ++ Sbjct: 203 QKAKELLENTDLPVIHIALELNYQEPNYFSKVFKKVVGITPSEYRKRSKK 252 >UniRef50_B3JI25 Sensor protein n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JI25_9BACE Length = 1318 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 15/179 (8%) Query: 81 QRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL------FTVLSRFLDSKK 134 + + P++ L +V M A+ K +L LSR+ SK Sbjct: 1139 RTAHIPVILLSAKQNTESKVEGLT--MGADDYVTKPFNMTILVLRIRKLIELSRYNVSKG 1196 Query: 135 FVS-----LMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKK-LKSEN 187 + +++ L + + + +E +I + D ++ ++ L +S L KK L+ Sbjct: 1197 TIDPAPSDIVITSLDEKLIEKAIKYVEDNISRSDLSVEELSRELGMSRVHLYKKMLQITG 1256 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 + + I R++ A L ++S+++ G+N+ YF FK+ +G+ P Y + Sbjct: 1257 KTPIEFIRVIRLKRAAQLLRDSQLHVSEIAFQVGFNNPKYFSRYFKEEFGVLPSAYQEK 1315 >UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC3_DESAD Length = 293 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 106/253 (41%), Gaps = 12/253 (4%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNN-----TLVA 56 +C Q +V + E +I + + ++ +++ + T++ Sbjct: 37 EVCVSQHSLVFVLEGTKYIHSADGDMV-IRKGEAFFCRKGCHLMSEMIPEDGGTFDTVLF 95 Query: 57 HISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKE 116 I+ +++ L+ + +QI RSA I ++ +++ S+ + + Sbjct: 96 FFDDAILGNFVDQLSAEKNQIASTDRSAFRIKVTEQVS---IYLSSMLSLFDSPLGKNDD 152 Query: 117 RTRALLFTVLSRFLDSKKFVSLMMY--MLRNCVSDSVYQIIESDIHKDWNLSMVASCLCL 174 R + +L + + + RN + ++E +K+ +L VA Sbjct: 153 FLRLKVNELLHYIYTASGNDEFVSFLVACRNSSRGDLSAVMERYFNKNISLETVAELSGR 212 Query: 175 SPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 S S K++ K NT+ ++ I RM +A L K+I+++S GY S S+F ++F+ Sbjct: 213 SLSSFKREFKKTFNTTPARWIRERRMSWAEQLLRNSAKSITEISYESGYESLSHFSTLFR 272 Query: 234 DFYGMTPLHYVSQ 246 YG+TP Y ++ Sbjct: 273 KNYGVTPREYRAE 285 >UniRef50_C5EUD7 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EUD7_9FIRM Length = 286 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 1/127 (0%) Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 +++ ++S+ + + + V V I +I L +A + +S + L Sbjct: 154 IKLIAGMINSRLLDEKVFSLEYHEVIKKVENYINQNISGPLPLKDIAQHVFMSSAYLSTT 213 Query: 183 LKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 K+ + + I R+ A + +IS ++Q G++ +YF VFK GMTP Sbjct: 214 YKNVTGRNITDYIQERRVSAACFLIRTTSGSISDIAQETGFSDANYFTKVFKKKTGMTPR 273 Query: 242 HYVSQHR 248 Y + + Sbjct: 274 EYRQRWK 280 >UniRef50_A9KQP4 Two component transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=A9KQP4_CLOPH Length = 533 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 3/150 (2%) Query: 97 VFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIE 156 ++ ++ +P E E+ L F R + + V + + I Sbjct: 382 IYEFRSRRDYLPTIVEIEQYDALRLWFAE--RIEIACRNVENKKKVTSISTVEKAKLYIR 439 Query: 157 SDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQ 215 + KD +L V+ + +SP K K E T++ +T RM A L+ +++ + Sbjct: 440 DNYQKDLSLEEVSRQVDISPYYFSKVFKEETGTNFIDYLTELRMSVAKQLLLESERSMKE 499 Query: 216 VSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 + GY+ +YF FK G+TP Y Sbjct: 500 IGIMVGYSDPNYFSRSFKKNIGITPTEYKE 529 >UniRef50_UPI0001788C2F two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C2F Length = 532 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 146 CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVN 204 + +S + IE + ++ +L+ +A P+ + K S+ Q +T RM++AV Sbjct: 419 TLIESAKRYIEENYMQELSLTSLAEQYNYHPTYFSEMFKEGAGVSFIQYVTEVRMKHAVR 478 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 L + +++ G++S YF S FK + +P + E+ Sbjct: 479 LLQETRLTVWDIAELTGFSSPGYFSSKFKKMFNQSPSEFRLSQSEK 524 >UniRef50_A6KZH7 Sensor protein n=8 Tax=Bacteroides RepID=A6KZH7_BACV8 Length = 1327 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 128 RFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKS- 185 R + +L S+ IE + + +++L ++ + +S S L +K+K+ Sbjct: 1203 RKEEDVNLETLAYPSANKLFLQSIIASIEQHLEESEFDLERLSGEMNMSKSTLYRKIKAM 1262 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 + + +M+ A L+ + IS+V+ + G+++ YF FK+ +GMTP Y Sbjct: 1263 TGLTPLDFVRNIKMKRACMMLLARTQTISEVAYAVGFSNPKYFTKCFKEEFGMTPTEYQQ 1322 Query: 246 QH 247 H Sbjct: 1323 SH 1324 >UniRef50_B7ACV0 Sensor protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7ACV0_9BACE Length = 1324 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 134 KFVSLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKS-ENTSYS 191 K + + + + + II ++ + N+ M+ + +S + L +++K T+ S Sbjct: 1206 KIAPVELQGNDEALMERIMNIINENLSNPNLNVEMLTQEIGISRTHLHRRMKEMTGTAPS 1265 Query: 192 QIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 I R++ A L +I+Q++ + G+ S ++F S FK YG++P+ Y +R R Sbjct: 1266 DFIRNLRLQQATVLLENKDLSITQIAYAVGFTSQTHFSSAFKKVYGLSPMEYAQSNRNR 1324 >UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8RTE5_9CLOT Length = 310 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 7/244 (2%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRF 69 + L+ E + +N ++ + + + E + I+ N T+V I + Y+ Sbjct: 40 LFLVLEGTLDFFINSRQYTLKPNDFVIVNPNEIHSIECPDPNITIVLQIPMKSFEGYMS- 98 Query: 70 LNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRF 129 D S+I + + L L ++R + + + + L V Sbjct: 99 ---DESRITFADKDESQKARLVALVTAMYR-TYEKGEFGYRLKVKSQFMEFLYLIVTEFR 154 Query: 130 LDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NT 188 ++ V + + +S V Q ++ + K+ +L MVAS +PS L + T Sbjct: 155 IEQIDKVRVQQKRHLDKLS-QVTQYMKENYDKELSLEMVASRFGFTPSYLSHMFREYAQT 213 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 Y + R++YA+ EL+ + + ++ G+ F FK YG P Y Q Sbjct: 214 GYRTYLMDLRVKYAMRELLNSDRYVGDIALDHGFADARAFAKAFKKRYGCLPSQYRKQMN 273 Query: 249 ERTV 252 ++ V Sbjct: 274 QKQV 277 >UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicutes RepID=Q2BDI9_9BACI Length = 525 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMM 208 + IE+ + L A + LSP K K ++ +T R+R A + L Sbjct: 427 KAKEYIEAHYAEALTLESAAEYVDLSPFYFSKLFKDRFGMTFIDFVTDVRIRKAKHFLKE 486 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 ++ ++ S GY +YF VFK G++P Y + Sbjct: 487 GSLSLKEICYSIGYKDPNYFSRVFKKHTGLSPTEYRKE 524 >UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K9C1_BACHD Length = 510 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 3/164 (1%) Query: 87 ILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNC 146 I+ + L DV + + A + K A +FL+ K + + + Sbjct: 343 IVLMGNLKYDVKELEREKYHYFATINAAKNVREAT--DCFYQFLEVTKQIISVYSNEGSS 400 Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNE 205 + IE + +LS +A+ +PS L + + +S+ + R+R A Sbjct: 401 SIQKMLAYIEEHHSEPLSLSQLANYFHFNPSYLSAYFRQHHDEGFSEYLNKVRIRKAKEW 460 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 L IS++ GY+ SYF VFK GM P Y ++ E Sbjct: 461 LKSSTIPISEIYALVGYSDHSYFCKVFKKRTGMPPSRYRRENAE 504 >UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTM5_MARMS Length = 257 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 91/238 (38%), Gaps = 8/238 (3%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYL 67 P + + + + + A+ + L + + + + + Sbjct: 26 PSLFKIRSGRKRLFWQD-DVLEFDASTLLLTKAGQQLTFENEPSKERFLSVQMSFLLPPA 84 Query: 68 RFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLS 127 + + I V + +P P+ +A+ ++ +T+S E +A Sbjct: 85 EGMIQ--MSIKVAKNECSPRF-----KPNRSVMASLDFLLELDTQSVSETAQAYWLNGFY 137 Query: 128 RFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSEN 187 + L + L+ + ++++ +D+ L VA+ +S + L ++LK EN Sbjct: 138 QQLAEVGKLHLLFEGHSVSFEQKITELLQQAPWQDYQLDQVATHFSMSRATLIRRLKEEN 197 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 T + ++T RM YA++ + + ++ CGY S F F +G+TP Y+ Sbjct: 198 TQFRTLLTRVRMNYALSLMQQGYRQQMDIAVRCGYQSQERFSQRFYKSFGITPSQYIK 255 >UniRef50_UPI0001973B3B response regulator receiver protein n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973B3B Length = 369 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 5/144 (3%) Query: 108 PAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHK-DWNLS 166 + +E E+T+ L + L+ + VS Y V I+ + + D++L+ Sbjct: 228 IPQAITEVEKTKHYLVGLFGCALEVRDRVSSDRYGQ---VIREAKSFIKENFSRGDFSLN 284 Query: 167 MVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNST 225 +VA+ + +SPS + E ++ + +T R+ A L +++ + GYN Sbjct: 285 LVAAHIGVSPSYFSSIFRQETGQTFVEYLTRVRIDSACEMLKCTNLRTAEIGERAGYNDP 344 Query: 226 SYFISVFKDFYGMTPLHYVSQHRE 249 YF S FK GM+P Y + R+ Sbjct: 345 HYFSSAFKKVMGMSPKEYKTSVRQ 368 >UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=Enterobacteriaceae RepID=A4TK67_YERPP Length = 291 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 92/250 (36%), Gaps = 8/250 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVS-SLNNTLVAHISHDII 63 + P ++++ IR +E + L + + + I S ++ + H Sbjct: 30 IEHPLLIMVNRGYKIIRWENQECVILPGEIAVINSGQTIDIINGLSNDDLFFSQQLHCDP 89 Query: 64 KDYLRFLNKDLSQIPVWQRSATP-ILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 F + P ++ + L P+ +E Sbjct: 90 SLIAAFAH----HPTSADLGVIPGVMAIRNLAPEFINTFGNIFNSISENSDIPTVIIKHR 145 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 L +L + ++ N +S+ V + + SD HK W+ S VA + +S +L++K Sbjct: 146 MLELLLWLAQRDVKFILNDG--NGLSEKVRRCLASDPHKIWSASEVAEHMTMSEVVLRRK 203 Query: 183 LKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 L +EN ++ RM A+ L IS ++ GY S+S F F+ +G P Sbjct: 204 LAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGYESSSRFAERFRKRFGFAPTA 263 Query: 243 YVSQHRERTV 252 HR + V Sbjct: 264 IRGHHRLQPV 273 >UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 Tax=Enterobacteriaceae RepID=D2TIS0_CITRO Length = 276 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 107/246 (43%), Gaps = 9/246 (3%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCEN----NIIDVSSLNNTLVAHISHDIIKD 65 I+ L + + IR + +++ + + + + S V H+ D+++ Sbjct: 36 IIHLRDAQLLIRTKDGQTLNIPPESLCYVEKNTVMDVALKVLGSGVPYEVYHVDSDVLRC 95 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTV 125 + + L + I T D + + + R + + Sbjct: 96 ICKVMEPLLLDPQRVNHTRRKIFTCAVDETD-----TRIFKRLTGSNVPQHRLVYKITYL 150 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 LS+ D + V + ++ + IIE+D+ + W L +A+ L +S ++KKL+ Sbjct: 151 LSKVNDIESLVYSLSVSTDTTFTEKLKVIIEADLSRSWRLVDLANILHMSEVSIRKKLEK 210 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 E+ +++ ++ RM +A + K+I+ ++ GY STSYFI FK+F+G+TP + Sbjct: 211 ESNNFNALVLDIRMYHAAKLITTSDKHINSIANEVGYTSTSYFIRNFKEFFGITPKQFSL 270 Query: 246 QHRERT 251 + +++ Sbjct: 271 KVKKQP 276 >UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1Q8_9BACL Length = 542 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 75/212 (35%), Gaps = 13/212 (6%) Query: 47 VSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSM 106 ++ L L + S + + R+L +D S + L + + + Sbjct: 323 LTRLEELLHQNDSASFLAETARYL-RDCLDRKTLDTSCLALFRLDIVQ--LVYAFLKLKG 379 Query: 107 MPAETESEKERTRALLFTVLSRFLDSKKFVSLM---------MYMLRNCVSDSVYQIIES 157 + A LL L D +++V+ + V++ + Q I + Sbjct: 380 IEAHKLYAARANEQLLAQSLHSIEDMQEYVTYLVNTAMAYRDFAAEPKSVAEEIKQYIHA 439 Query: 158 DIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQV 216 + + +A + L+P L + K E S + R+ A L ++ V Sbjct: 440 HYGDELTRNDLAEVVYLNPDYLARLFKKETGISLGSYVIQVRISVAKQLLETTKLSVYAV 499 Query: 217 SQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + GY + SYF +FK G+TP Y R Sbjct: 500 ANQVGYANYSYFSKLFKQEVGVTPNEYKKNPR 531 >UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and AraC-type DNA-binding domain) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK9_ANOFW Length = 428 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 1/101 (0%) Query: 146 CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVN 204 V + V ++ + D L VA + L+P K K E ++ +T R+ A Sbjct: 322 SVIEQVEMFLQENYCYDVTLEEVAKYVHLTPYYFSKLFKKETGQTFIDYVTHLRIEKAKQ 381 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 + +G + + GY +YF VFK MTP Y Sbjct: 382 LMRDEGLTVKEACYRVGYKDPNYFSRVFKKVTNMTPTEYRQ 422 >UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Shewanella RepID=A6WTM9_SHEB8 Length = 252 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 96/244 (39%), Gaps = 10/244 (4%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 ++ QP I+ + + + E + + + L+ ++I V+ + Sbjct: 17 QVPVHQPSIIRVIHGEKSLLWQD-ESVLVGQGQLLLIPAGSHISFVNRP---FLGRYRAV 72 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 + LS W+ +P A ++++ + + S + + Sbjct: 73 QLLLPHDLPQGILSSTADWRD------PMPVQNVSRAVDLAWNALLQSLSLSLADSVQLH 126 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 L L K+ VS + + V+ + ++ W +A L +S + L++ Sbjct: 127 YLAALLLSLPDKRSVSWLYGHTQRSVTQAALALMSVSPAAPWQQEEIADKLHMSTASLRR 186 Query: 182 KLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 KL E+TS+ Q++ R+ + + L G+ + QV+ +CGY S F FK +G+TP Sbjct: 187 KLALEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQFGLTPA 246 Query: 242 HYVS 245 Y Sbjct: 247 AYRR 250 >UniRef50_A4XJL7 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJL7_CALS8 Length = 291 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 100 VAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDI 159 + A T + E+ +++L + + S M+ + + + + I++ Sbjct: 133 IEAARRSFFNLTHIDHEKLQSVLD--MMHIVAKYILDSEMIRISSLSSIEKIIEYIKNHY 190 Query: 160 HKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQ 218 +D L +A + LSP+ L K + ++ + + R++ + + +I ++S+ Sbjct: 191 MEDITLDDLAKMVYLSPTYLSYLFKKQLGITFKEYLINIRLKKSKELIETTDLSIGEISK 250 Query: 219 SCGYNSTSYFISVFKDFYGMTPLHYVS 245 G +YF +FK +G++PL+Y Sbjct: 251 MVGIEDQNYFSRLFKKKFGVSPLNYKK 277 >UniRef50_C6CTP9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTP9_PAESJ Length = 537 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 1/103 (0%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYA 202 + + + + +E + +++ L ++ LS + ++ K E + + R+ A Sbjct: 434 EHSIMRDIARYMEQNYNREVTLQDISERFYLSREYISRRFKQEMGENVFDYLGRIRVEKA 493 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 L I+Q+++ GY+ YF VFK F G +P Y Sbjct: 494 KLLLQNPNLKIAQIAEMVGYDDDKYFSKVFKKFEGQSPNQYRK 536 >UniRef50_C7II19 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7II19_9CLOT Length = 279 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 19/241 (7%) Query: 22 VNGKEPISLK---ANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIP 78 NG E + + + L + +D SL+ L+ S I+ +L + Sbjct: 33 QNGNEALEIARQVKPDIILSDISMPAMDGISLSRELLGQNSDCIVI-FLSGYSDFKYAKA 91 Query: 79 VWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFV-- 136 + P ++F + A KER+ + ++ L+ K V Sbjct: 92 ALSMGVFDYILKPTSPEEIFDCVQR-----ARVRILKERSERVSLHIMRTELEVHKMVGN 146 Query: 137 -------SLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENT 188 + V D + + IES+ D +L ++ + L+ + + LK S Sbjct: 147 QEIRGCEEVSNSRNSEGVVDKIMKYIESNYMNDISLITLSEEIHLNSIYISRILKRSTGY 206 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 ++ +IIT RM A L G I+QVS+S G N YF VFK + +TP + + + Sbjct: 207 TFLEIITAVRMVKAAELLRNSGFTIAQVSESVGINDQRYFSQVFKKIFNLTPREFRNLNN 266 Query: 249 E 249 E Sbjct: 267 E 267 >UniRef50_A8VZY4 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZY4_9BACI Length = 524 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 95/241 (39%), Gaps = 5/241 (2%) Query: 12 LLTEKDVWIRVNGKEPISLKANHMALLNCENNII-DVSSLNNTLVAHISHDIIKDYLRFL 70 LL +K G I L+ + + N++I D +L + V D I + L Sbjct: 276 LLFKKQNGYFTRGSLLILLQTLQPEVCHPVNHVIQDSLNLASQAVMDDDTDRINQAMALL 335 Query: 71 NKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFL 130 + + V L ++ + +HS + ++ T + + + L Sbjct: 336 LDQVYDMRVHPEEIEERLIKMVYQLEIKK-GTEHSDVHFAKRLKQSVTFEEAWIMTRQKL 394 Query: 131 DSKKFVSLMMYMLRNCVSD--SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSEN 187 S + V +L S + + I S +H+ + VA L L+ S + K+ Sbjct: 395 HSLQTVPESSQVLPVDTSKLKRIDEYISSHLHESITSTDVAKALYLNSSYFSRYFRKATG 454 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 ++ + +++ A + L ++I ++ G+ +YF VFK + GMTP + ++ Sbjct: 455 KRFTDYVYEYKIKIARDYLKYSNESIEEIGAELGFTERTYFSKVFKKYTGMTPSEFRTKT 514 Query: 248 R 248 + Sbjct: 515 Q 515 >UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6G3_9FIRM Length = 532 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 18/197 (9%) Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 I ++ + I +Q L L LT ++ R+A + + A+ Sbjct: 334 RQSINRFIGRFYETRLPIGQYQ------LYLMELTAELVRLARAYQLDTADVFGPDFAAS 387 Query: 120 ALLFTVLSRFLDSKKFVSL----------MMYMLRNCVSDSVYQIIESDIHK-DWNLSMV 168 L S + L +++ Q I D ++ M+ Sbjct: 388 LRLEAFDSLDELKARLSELCLRISELIRRERSNSTRGIAEGAKQFIAEHFSDPDISVEML 447 Query: 169 ASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 L +SP+ K E S+ +T RM AV L ++S GY +Y Sbjct: 448 CDHLHVSPAYFSTLFKKETGMSFVAWLTNVRMDEAVKLLSTTEDKTYEISLKVGYTEPNY 507 Query: 228 FISVFKDFYGMTPLHYV 244 F VFK +GM+P Y Sbjct: 508 FSYVFKKQFGMSPTKYR 524 >UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C05 Length = 511 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 112 ESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASC 171 E + RA+L VL++ D+ + + + I+ + D L +A Sbjct: 378 EELEVNFRAVLNEVLAKRTDAAGDSP--------RIVERIKNIVRDEYRNDIGLEDIAER 429 Query: 172 LCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFIS 230 + L+P+ L K E + + IT RM A L I V+++CGY + YF Sbjct: 430 VNLAPAYLSYLFKKETGANLVKYITDYRMEQARKLLEEGELKIVLVAKACGYENQPYFNR 489 Query: 231 VFKDFYGMTPLHYVSQHRERT 251 +FK++YGMTP Y ++ ++ Sbjct: 490 LFKNYYGMTPRQYREKNGKQQ 510 >UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C33 Length = 293 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 89/239 (37%), Gaps = 8/239 (3%) Query: 14 TEKDVWIRVNGKEPISLKANHMALLN-CENNIIDVSSLNNTLVAH--ISHDIIKDYLRFL 70 E+ + I +K + ++ +++ SS +N LV + I + + L+ + Sbjct: 44 VEEGSGYHYVEDQLIPIKRGDLFVIPIGTSHVFRPSSQDNQLVIYNCIFRTCLLEQLKSV 103 Query: 71 NKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR-- 128 + +++ ++P + + M E + R L+ L + Sbjct: 104 ICESTKLHSLLYGSSPSAKWLQYQDKFDKFLSIMHGMFREYLKKGPRYEFLMMGQLIQVL 163 Query: 129 -FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE- 186 L + M+ N + D++ Q I + + VA +SPS ++ K Sbjct: 164 AMLQRYECDGSMVSTPTNNMDDAI-QYINDHFATNLTVQQVAERSFMSPSHFQRLFKKTT 222 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 ++ Q + R++ L +I + + GY +F S+F+ G+TP Y Sbjct: 223 GVTFMQFLQNIRVQRCCELLKSTEISIQEAANQVGYQDMKFFHSLFRKKTGVTPREYRR 281 Score = 42.2 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 199 MRYAVNELMM---DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 M A+ + + QV++ + S S+F +FK G+T + ++ R + Sbjct: 183 MDDAIQYINDHFATNLTVQQVAERS-FMSPSHFQRLFKKTTGVTFMQFLQNIRVQ 236 >UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escherichia coli RepID=PERA_ECO27 Length = 274 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 107/238 (44%), Gaps = 12/238 (5%) Query: 11 VLLTEKDVWIRVNGKEPIS---LKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYL 67 +++ ++ K+ + +++N + L + + + I + + Sbjct: 32 IVIFTGGNQFKIRNKKEFTEYTIESNSLFFLAKNTHW-------DMEIVGIDNSNPYRKI 84 Query: 68 RFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQH--SMMPAETESEKERTRALLFTV 125 + + + + + T ++ + +++ S + + + Sbjct: 85 IIDDALIKLLHSISSDDSCYVKKKIFTANLNEMQLNIVSNIITDIKYSGNNKKIFKILYL 144 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 LS F D V++++ + D V ++IE DI K+W L V+S + +S S L+K+L Sbjct: 145 LSFFNDYNDIVNVILSASSKSIVDRVIKVIELDISKNWKLGDVSSSMFMSDSCLRKQLNK 204 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 EN ++ +I+ +M++A L KNI ++S G+NSTSYFI VFK++Y TP Y Sbjct: 205 ENLTFKKIMLDIKMKHASLFLRTTDKNIDEISCLVGFNSTSYFIKVFKEYYNTTPKKY 262 >UniRef50_D1PCS5 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCS5_9BACT Length = 1378 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 6/173 (3%) Query: 81 QRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMM 140 + +A P + L D R + A+ K +L + L +K VS Sbjct: 1206 ETTAIPFIMLSARMGDEQRKESLKCG--ADEYIAKPFDIDMLNLCILNLLKKRKNVSTEY 1263 Query: 141 --YMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITT 196 D V I + + ++ +++ LC+S L K++ S + S+ + T Sbjct: 1264 VITEADRKFIDEVNAYIRDHMSNPETSVESLSTHLCISRVQLYKRMISLTGITPSEYLRT 1323 Query: 197 CRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 R+++A + L NIS+++ G+N+ YF F+D YG+TP Y E Sbjct: 1324 KRIKFAEHLLRSGDLNISEIAYKVGFNNPRYFTKYFQDTYGVTPSQYRKNLSE 1376 >UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRN2_ALIAD Length = 274 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 7/130 (5%) Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 RAL T D K+ + + ++ + IE +D +LS +A + LS S Sbjct: 149 LRALCLTFDKYGYDPKRATPVPI------AAERIRAYIERHAAEDLSLSDIADAVGLSVS 202 Query: 178 LLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 + K + Q + R++ A + + N+ +++ CG++S SYF VF+ Y Sbjct: 203 RVVHIFKEAYGQTVVQYLQNVRLQMACDRMRFSNLNLEEIADRCGFHSYSYFYRVFRQKY 262 Query: 237 GMTPLHYVSQ 246 G++P + + Sbjct: 263 GISPREFRQR 272 >UniRef50_UPI0001C36780 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36780 Length = 491 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Query: 140 MYMLRNCVSDSVYQIIESDIHKDWNLSMVAS-CLCLSPSLLKKKLKS-ENTSYSQIITTC 197 + + D + +E + + + +L+ +A+ ++P+ L + K+ +S+ + Sbjct: 379 RTVNEGDIIDEIQAFLEDNYYCEISLNELAATKYFMNPNYLSRLFKARTGMGFSKYLLGL 438 Query: 198 RMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 RM+ A L NI++V+ GY S SYFI FK ++G TP ++ Sbjct: 439 RMKKAEELLENGDMNINEVALMVGYTSPSYFIQNFKKYFGRTPGTQRNK 487 >UniRef50_B9MLQ2 Two component transcriptional regulator, AraC family n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MLQ2_ANATD Length = 519 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%) Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 VLS F +K + + N + + I + ++ LS ++S +P K Sbjct: 392 AVLSLFSKAKTKHEQI---INNDSINKAIEFINQNYSEEITLSQISSTFNFNPYYFSKLF 448 Query: 184 KS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K S+ +T R++ A L K+I ++S + G++ +YFI FK F GMTP Sbjct: 449 KKYTGVSFKTYLTKLRIQKACQLLKNTSKSIKEISFAVGFSDPNYFIKAFKKFTGMTPSA 508 Query: 243 YVS 245 + S Sbjct: 509 FRS 511 Score = 40.3 bits (93), Expect = 0.060, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 17/161 (10%) Query: 91 PCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDS 150 P P + Q + E E ++ ++ L++ + V Sbjct: 318 PTQIPMIENYITQLCKLYIELFGENNLKYKVIKLIIMLLLET----GIATSDESIDVEKL 373 Query: 151 VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMM-- 208 + QI+ S + + + LS T + QII + A+ + Sbjct: 374 ISQILNSSYEQ---IVEIFKKAVLS------LFSKAKTKHEQIINNDSINKAIEFINQNY 424 Query: 209 -DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + +SQ+S + +N YF +FK + G++ Y+++ R Sbjct: 425 SEEITLSQISSTFNFN-PYYFSKLFKKYTGVSFKTYLTKLR 464 >UniRef50_A8RM75 Putative uncharacterized protein n=2 Tax=Clostridium RepID=A8RM75_9CLOT Length = 253 Score = 123 bits (308), Expect = 6e-27, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 12/165 (7%) Query: 85 TPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLR 144 + L P D+ + E +++E T A VL D K + Sbjct: 100 SDYLLKPLRDGDLEQAVRHIREQMEERPAKEEETDAA--PVLRFHSDKK---------SK 148 Query: 145 NCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAV 203 N ++ + I +D +S VAS L +S L + K E + +++ + RM+ A+ Sbjct: 149 NKYVEAATRYIREHYREDITISTVASFLEISEGYLSRVFKKETDYTFTNYLAYYRMQMAM 208 Query: 204 NELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 N L + +V+ GY+ T+YF + FK G++P Y + R Sbjct: 209 NLLKDCRVKVYEVADQVGYSDTAYFSAQFKKILGVSPSEYQDRCR 253 >UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2Y7_9BACL Length = 118 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 146 CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVN 204 + ++V +E + L M+A + P+ K+ K S+ + + RM+ A Sbjct: 13 EIMEAVRLYLEQHYAEPIQLQMIAERFFIHPNYFSKRFKEKYGESFVDYLNSIRMKEAAA 72 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 L I ++S+ G+ +YF SVF+ +YG TP Y + ++ Sbjct: 73 LLGETNLKIREISERVGFEDAAYFSSVFRKWYGETPKQYRERQLKK 118 >UniRef50_D0WIH5 Transcriptional regulator, AraC family n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIH5_9ACTN Length = 813 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 6/111 (5%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSENTSYSQIITTCRMRYAVNELM 207 + + + ++ + L +A L LS L + KS +++ + R++ A+NEL+ Sbjct: 173 ERIERYLDIHYAETITLDALAEELYLSKGYLSRFFTKSFGVNFNHYVRELRLKRALNELL 232 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV-----SQHRERTVA 253 K I+Q+S G++ +SYF FK YG +P +HRE+ A Sbjct: 233 YTDKPITQISFDNGFSGSSYFNRAFKKKYGASPSEMRAEVRAKEHREQMSA 283 >UniRef50_C6LB63 Putative response regulator receiver domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LB63_9FIRM Length = 517 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 1/158 (0%) Query: 89 TLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVS 148 + L + Q + + + LL V L+ K ++ + V Sbjct: 355 IVKALDSMMSEEMKQKTDESLMRIYQSQTLERLLRFVYGFLLEIGKNINFQKEIRGVDVL 414 Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELM 207 + + +E + + M+A + S K+ S+S +T RM+ A L+ Sbjct: 415 EHCREYLEKHYMDEITMEMIAEKYYFNASYFSTVFKNYFGKSFSGYMTELRMQKAKEFLI 474 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 I +++ GY +YFI FK FYG TP Y Sbjct: 475 STDWKIKEIASKTGYRDANYFIRAFKKFYGYTPEEYRK 512 >UniRef50_C6CWF4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWF4_PAESJ Length = 451 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 9/148 (6%) Query: 101 AAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIH 160 AA + ++ S+ E R+ + + L R + ++ ++ V D Q I Sbjct: 309 AATANPASSDEHSDSEDQRSYVISALQRIREQREQQTI-------NVMDKAKQYIGLHFT 361 Query: 161 KDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMM-DGKNISQVSQ 218 ++ +L A + L+P K K + ++ +T R+ A + D + +V Sbjct: 362 EELSLEETAEHVHLNPHYFSKVFKQQVGATFIDYLTGLRIEKAKQLISSADELALKEVCF 421 Query: 219 SCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 GY +YF VFK G+TP Y SQ Sbjct: 422 EVGYKDPNYFSRVFKRVTGLTPTEYRSQ 449 >UniRef50_C7PB15 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PB15_CHIPD Length = 291 Score = 122 bits (307), Expect = 8e-27, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 94/256 (36%), Gaps = 16/256 (6%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C ++ + R+ G S M L +I V + + + + + Sbjct: 36 CELVFVMESNGKRIVGDSIESFDVGDMVFLGP--HIPHVWYNDESYHKNNDQLKARSVVI 93 Query: 69 FLNKDLSQIPVW----QRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL--L 122 + KD+ + +S T + + + +KE + L Sbjct: 94 YFPKDIFGEKFYGLPETKSLTDLFHRAQRGMKILGPTYDMLKEQILSLPKKEGLERIISL 153 Query: 123 FTVLSRFLDSKKFVSLM-------MYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 +L ++K L N D V++ + + K+ +L VAS LS Sbjct: 154 LNILKILAETKDVQYLASTGYSHAFNAKDNHKIDEVFKYVMGNFSKEISLQDVASITNLS 213 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 P + K+ S+ Q + R+ +A L + +I++++ SCG+ + S F FK+ Sbjct: 214 PQSFCRFFKNRTKKSFVQFLNEVRIGHACKRLTEEDWSIAEIAYSCGFKNLSNFNRFFKE 273 Query: 235 FYGMTPLHYVSQHRER 250 G TP Y ++ R + Sbjct: 274 IVGKTPKEYKNELRLK 289 >UniRef50_C9Y024 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9Y024_CROTZ Length = 296 Score = 122 bits (307), Expect = 8e-27, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 5/140 (3%) Query: 112 ESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASC 171 SE E + L +LS ++ N +S V +E + + ++L +A Sbjct: 155 RSEHEEVASFLIHLLSLLPET----PAPPPRASNALSTQVMFWVEENYAQKFSLGALALK 210 Query: 172 LCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFIS 230 L S S L ++ + E + +TT R+R A L +++ +++ G++ T+YFIS Sbjct: 211 LNRSRSYLSRRFQQETGEAIHDYLTTFRLRKACELLRHHAYSVADIARMTGFSDTTYFIS 270 Query: 231 VFKDFYGMTPLHYVSQHRER 250 F+ G TPL Y + Sbjct: 271 SFRKRLGETPLQYRKSRKHE 290 >UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=Verrucomicrobia RepID=B9XAQ1_9BACT Length = 326 Score = 122 bits (307), Expect = 8e-27, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 5/142 (3%) Query: 110 ETESEKERTRALLFTVLSRFLDSKKFVS----LMMYMLRNCVSDSVYQIIESDIHKDWNL 165 +T+ R + ++L F VS + V + IE + +D L Sbjct: 182 DTKVVSTRQHEAIVSLLEIFAQHISLVSNWVLVQERNAEPPVIARAKRYIEDNQAEDLTL 241 Query: 166 SMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNS 224 S VA + S K K +++ ++ R+ A N L+ +S+V+ G+ S Sbjct: 242 SEVAKAVNTSTFYFCKMFKKATGLHFTEYVSRVRIEKAKNLLLNPNLRVSEVAFEVGFQS 301 Query: 225 TSYFISVFKDFYGMTPLHYVSQ 246 ++F VFK G +P Y Q Sbjct: 302 LTHFNRVFKKIVGQSPTEYREQ 323 >UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX05_9GAMM Length = 335 Score = 122 bits (307), Expect = 9e-27, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Query: 126 LSRFLDSKKFVSLMMYMLR--NCVSDSVYQIIESDIHKDW-NLSMVASCLCLSPSLLKKK 182 L FL + + L+M N +S V +I D + + + M++S L +S L+++ Sbjct: 208 LREFLRTAPYQMLIMENDPAGNNLSAQVKAMIGHDFSEGFPSFEMISSALSMSAPTLRRR 267 Query: 183 LKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 LK E T++ QI R A L +I++V+ G+ S F FK + G TP Sbjct: 268 LKREGTTFQQIKDDSRCEAAKLCLNRHDLSINEVAMQMGFTDPSAFHRSFKKWTGQTPGQ 327 Query: 243 YVSQHR 248 + SQ R Sbjct: 328 FRSQLR 333 >UniRef50_C6CRZ9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRZ9_PAESJ Length = 501 Score = 122 bits (307), Expect = 9e-27, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 5/113 (4%) Query: 140 MYMLRNCVSDSVYQ---IIESDI-HKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQII 194 N +S+ Q IE D ++ VA + L+PS L K E +++ + Sbjct: 389 WKQQANPYVNSIQQAIDYIEEHYLDSDLSIKQVAENIHLNPSYLSTLFKKETGETFTGYV 448 Query: 195 TTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 +++ A L IS++ Q+ G+ ++YF SVFK + ++P + H Sbjct: 449 NKLKLQKAQVLLRNTDMKISEICQTVGFEDSTYFSSVFKKHFQISPSEFRQNH 501 >UniRef50_B3CFH0 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CFH0_9BACE Length = 1313 Score = 122 bits (307), Expect = 9e-27, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 107/255 (41%), Gaps = 23/255 (9%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRF 69 ++ L E D I + K K N D+ + + + + + D++K+ + Sbjct: 1065 VIYLYEGDKDIDLFIKSVFQNKFNISLNTAA----TDIKHILDKIPSLVIFDVVKED-DY 1119 Query: 70 LNKDLSQIPVWQR-SATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 + ++ +Q SA P++ + L+ ++ A + A+ K A L + + Sbjct: 1120 KFELCRKMKEYQILSAIPVIFISSLSSEITEQKAYEAG--ADVFIAKPFNVASLDARIRQ 1177 Query: 129 FLDSKKFV-------------SLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCL 174 LD + + +++ + ++ +IE +I ++N+ +AS L + Sbjct: 1178 LLDVRTAIKENIRKELIIDPKEVLITSDDDKFVANIINVIEDNIADVEFNIDKLASLLNI 1237 Query: 175 SPSLLKKK-LKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 S S L ++ ++ N S S +I RMR A L +S++ GY+ YF FK Sbjct: 1238 SRSTLYRRAMEITNLSPSDLIRKRRMRRAAELLKQTSHPVSEICYMVGYSDQRYFGQSFK 1297 Query: 234 DFYGMTPLHYVSQHR 248 +GMTP Y Q + Sbjct: 1298 KEFGMTPKQYSIQKK 1312 >UniRef50_C6CTB8 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTB8_PAESJ Length = 530 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 80/209 (38%), Gaps = 11/209 (5%) Query: 47 VSSLNNTLVAHISHDIIKDYLRFLNK---DLSQIPVWQRSATPIL---TLPCLTPDVFRV 100 + L A + +++L F ++ L++ P + L + L + Sbjct: 321 LHQAERGLTALLEDGQHREFLAFASELFHTLAESPGARYEHVEYLYTEIIHVLRKHAAKT 380 Query: 101 AAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMM----YMLRNCVSDSVYQIIE 156 A + T + ++S K +S ++ + + DSV Q + Sbjct: 381 AFELPNWNLGTPIASLESFTDWRQIISVIEQQLKRLSSVLDGGAERSCDDIIDSVQQYVR 440 Query: 157 SDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQ 215 +++ +L V+ + P+ K+ K SY+ +T R+ + L I++ Sbjct: 441 QHYNEELSLQWVSDKYFIHPNYFSKRFKQIVGISYNDYVTRVRIERSKELLKTTTLKIAR 500 Query: 216 VSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 +SQ GY YF SVFK G++P Y Sbjct: 501 ISQLVGYEDQGYFCSVFKKVTGVSPSAYR 529 >UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=Cyanobacteria RepID=B0C3V1_ACAM1 Length = 283 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 9/219 (4%) Query: 31 KANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTL 90 + + + + + V I + +L+ + ++ + P + Sbjct: 67 RKGDILITPAKIPLF-VRWEGEENCLQIQ--LTTQFLQSVARETLEQNSDLIELIPTFHV 123 Query: 91 PCLTPDVFRVAAQHSMMPAETESEKERTRALL----FTVLSRFLDSKKFVSLMMYMLRNC 146 + + H+ +T + +L +L + + + L Sbjct: 124 RDAQMEAIAMML-HTEFQQDTSGNRLYLDSLANILAVNLLRHHATKRPQLPIYEGGLPPR 182 Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNE 205 V I++ + + L+ +A L +SP + K S S Q + R+ +A Sbjct: 183 QLQQVLDYIDAHLDCEIKLADLAQILDMSPFHFSRLFKLSTGKSPHQYLIQQRIEHAKQL 242 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 L + I ++ CG+NS S+ F+ G+TP Y Sbjct: 243 LKQTDRRIIDIAYECGFNSHSHLSKQFRQMMGVTPKVYR 281 >UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PFA6_VIBFU Length = 268 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 91/235 (38%), Gaps = 5/235 (2%) Query: 11 VLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFL 70 +++ K + PI+L N++ ++ ++ + S N L + Y L Sbjct: 38 LMIVTKGAGQHILNDVPINLAQNYICYISPKDRHLFEQSDNLHLTNILFQKNKLAYSPLL 97 Query: 71 NKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFL 130 L + Q+S V + AQ + E LF L + Sbjct: 98 KSVLPKESDAQQS---WYISTETMKKVCTLMAQIEHESSLHSVESRLMTEALFQQLVVEI 154 Query: 131 DSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTS 189 + S N + + I+++ +++N+ ++ +S L +++K N S Sbjct: 155 SRGRLTSQSNNASDNSIL-KIIDWIQNNYAEEFNVGDISDQFEISSRTLSRRIKQVTNLS 213 Query: 190 YSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 ++ + R+ +A+N L +++ ++ GY ++YF + FK F TP + Sbjct: 214 FNNYVHRVRINHAMNLLHYSDLSVTDIAFQVGYKDSNYFSTKFKRFTNKTPTEFR 268 >UniRef50_UPI0001968F18 hypothetical protein BACCELL_00802 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001968F18 Length = 1345 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 134 KFVSLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKS-ENTSYS 191 K + M N + D V II +I + + M+A + +S L +KLK N S Sbjct: 1220 KNQMVDMQSTDNKLLDKVMNIINRNISNPELTVEMIAKEIGISRVHLHRKLKELTNQSTR 1279 Query: 192 QIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 +I R++ A N L+ ++++V+ G++S + F FK+ YGMTP Y+ +H Sbjct: 1280 DLIRNVRLKQAANLLIYKRYSVTEVASLTGFSSITLFSRSFKELYGMTPSEYIGKHSNE 1338 >UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C353D2 Length = 286 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 5/147 (3%) Query: 104 HSMMPAETESEKERTRALLFTVLSRFLDSKKFV----SLMMYMLRNCVSDSVYQIIESDI 159 ++M E K + LL+ + L +++ S + + +V IE+ Sbjct: 135 FALMQDSDEGGKLQCLGLLYQFMGLLLQDRRYTASDKSDLSTHRNIYLLKNVLNYIEAHY 194 Query: 160 HKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQ 218 + L +A +S + + R+ A L G +I+ ++ Sbjct: 195 TEKITLHELARTAGMSSKYFCHFFSEMTGRTPIDYVNYYRVERACCLLAGIGHSITDIAM 254 Query: 219 SCGYNSTSYFISVFKDFYGMTPLHYVS 245 CG+N SYF FK + G++P Y+ Sbjct: 255 LCGFNDVSYFTRAFKKYKGISPGQYLK 281 >UniRef50_A7M2Q7 Sensor protein n=7 Tax=Bacteroides RepID=A7M2Q7_BACOV Length = 1377 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 12/183 (6%) Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 L +K QI + A + P ++ R + + E K + Sbjct: 1204 LTAKSKAEDQIEGLEIGADAYIVKPF-NTELLRTTISNLIANRERLRGKLVGEQQV---- 1258 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKD-WNLSMVASCLCLSPSLLKKKLKS 185 +K + M + V + I + N+ M+A+ + +S + +KLK Sbjct: 1259 -----EEKITKIEMKSNDEILMSKVMKTINDHLADPTLNVEMLAANVGMSRVHMHRKLKE 1313 Query: 186 -ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 N S I + R++ A N L ++S+V+ + G+++ S+F + F+DFYG++P Y Sbjct: 1314 LTNQSARDFIRSIRLKQAANLLREKNLSVSEVAYATGFSNLSHFSNTFRDFYGISPSEYK 1373 Query: 245 SQH 247 Q Sbjct: 1374 EQQ 1376 >UniRef50_C6CZ23 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ23_PAESJ Length = 522 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 2/136 (1%) Query: 114 EKERTRALLFTVLSRFLDSKKF-VSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 E+ R +L+ F+ K ++ N + I + NL+ +A Sbjct: 385 EESRNANTAAELLTAFIGEAKLCIAEKAEQSGNANMKRLLDYIHEHYAESLNLTEMAKHF 444 Query: 173 CLSPSLLKKKL-KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 +PS L N + + R+ A L +IS++S GY+ SYF V Sbjct: 445 HFNPSYLSSYFSTHHNEGFVDYLHRVRLEKASELLRAGEASISEISGMVGYSDHSYFCKV 504 Query: 232 FKDFYGMTPLHYVSQH 247 FK G++P Y Q+ Sbjct: 505 FKKHTGLSPSRYRQQN 520 >UniRef50_A4XMG0 Two component transcriptional regulator, AraC family n=2 Tax=Thermoanaerobacterales RepID=A4XMG0_CALS8 Length = 529 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 113 SEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 +KE +A L + L+ +D + + +N + + IE + +K+ L VA + Sbjct: 398 EKKELIKASLLSFLNATVDKIEQIE-----NKNLIVKAAISFIEKNYNKNITLESVAKEV 452 Query: 173 CLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 ++P+ L K E ++ + R++ A L QV+ G++ YF V Sbjct: 453 YVTPAYLSILFKRELKINFVDYLHKIRIQKAQELLKNQNLKTYQVANMVGFSDEKYFSQV 512 Query: 232 FKDFYGMTPLHYVS 245 FK + G+TP + Sbjct: 513 FKKYTGLTPSQFRE 526 >UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=Enterobacteriaceae RepID=B5XZ22_KLEP3 Length = 287 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 89/249 (35%), Gaps = 8/249 (3%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDI 62 + D P + ++ + R G+ L+AN + + ++ L+ I D Sbjct: 36 VQVDFPRLNIILNGQLPDRALGENASPLEANDVLYIPGDSWNCPQWQAP-CLLLSILFDK 94 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 + + + I V ++ L A M + E+ R+++ Sbjct: 95 QRLECSLQHWNGKAITVVEKRQA--LRRGPRVGSFLLQALNELRMQPQ---EQRTARSIV 149 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 ++LS + +++ Q +++ + + VA LSP+ L Sbjct: 150 VSLLSH-CHDLLGSQAQTSSRSQALFEAIRQYMDAHYAEPLSRESVAQAFYLSPNYLSHL 208 Query: 183 LKSEN-TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 + +++ + R+ A L + ++ +CG+ ++YF +F+ +P Sbjct: 209 FQKCGPMGFNEYLNHIRLEQARMLLKGHDMKVKDIAHACGFADSNYFCRLFRKTTERSPS 268 Query: 242 HYVSQHRER 250 Y Q+ + Sbjct: 269 EYRRQYHSQ 277 >UniRef50_C1PBK0 Transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBK0_BACCO Length = 768 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 95/241 (39%), Gaps = 3/241 (1%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLV-AHISHDIIKDYLR 68 ++L+ + ++ + VN + L NH+ L+N + + N ++ I ++I+ Y Sbjct: 28 LLLVIKGELEVTVN-QHACHLSENHLLLINANDIRSMKGNKENVVLSLQIPLEMIEAYYP 86 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 +++ + + + ++ H +E E + +L R Sbjct: 87 AIHECRFDCDSSNEDNGMYMFFDQIRQLMAKIFIAHYQQKEGSEIEIYSMIFQIVLILIR 146 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-N 187 + + + + I + K L+ +A+ LS L + K + Sbjct: 147 NFKTTYLGRHAHSRINDERMKEILAYIGKNYRKPITLAEIANRHYLSLYYLSRYFKEQVG 206 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 S+SQ I R++ AV EL+ I+++S + G+ + F FK+ Y TP Y H Sbjct: 207 ESFSQYIKQLRLKSAVRELVYTDHPITRISLNNGFPNVKAFNKAFKEKYRQTPSEYRRLH 266 Query: 248 R 248 + Sbjct: 267 Q 267 >UniRef50_UPI0001788EF7 two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=UPI0001788EF7 Length = 516 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 77/194 (39%), Gaps = 14/194 (7%) Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 + D+S + + S + P + A +M A + EK + +FT + R Sbjct: 322 LIEGDVSSLQAYIESVLDGGSGAQTVPRGACMNAAVQLMIAAKDVEKSPDYSEVFTPMHR 381 Query: 129 FLDSKKFVSLMMYMLRNCV-------------SDSVYQIIESDIHKDWNLSMVASCLCLS 175 + S + ++ + + + ++ ++ +L ++ L + Sbjct: 382 INTLQGLRSHVWRIVERSLQRLQEAEQGYSLHVSFLVEQVQHHYPEELSLKTLSQRLQMH 441 Query: 176 PSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 P+ L + + E S+S + R+ A L+ + + ++ S GY +SYF FK Sbjct: 442 PNYLGQLFQQEVGASFSDYLNQYRIEKATQLLLHTDQKTADIAFSVGYTDSSYFYRQFKK 501 Query: 235 FYGMTPLHYVSQHR 248 + G++P S +R Sbjct: 502 YTGVSPTEMRSMYR 515 >UniRef50_C6CZ56 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ56_PAESJ Length = 519 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 E +L + RF + + + + + + D++ ++ + + L VA+ + Sbjct: 385 ETIDDILSWLRRRFFELSELLYVKRQKQKRKLFDNIMAFVDERLEQKITLKEVAAHFDFT 444 Query: 176 PSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 P+ L K E T +S + RM L + ++++ GY + YF FK Sbjct: 445 PNYLGTLFKEETGTLFSDWLNERRMDRVRELLADPCLKVYEIAERVGYKNIIYFNRQFKQ 504 Query: 235 FYGMTPLHYVSQHR 248 F GMTP Y +H+ Sbjct: 505 FTGMTPGEYRKKHK 518 >UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ3_ALKMQ Length = 282 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 95/250 (38%), Gaps = 8/250 (3%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN--NIIDVSSLNNTLVAHISHDII 63 DQ I L + + + +K+ + L+N ++ D + ++ V Sbjct: 35 DQYEIYYLLSGERHYFIKDR-IFHVKSGTLVLINRQDVHRTTDADTQDHVRVLLNFSKDY 93 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 ++ L + + P L+ +V H + T + +ALL Sbjct: 94 LLSSPYVIALLDGLFMNNNYVIPFLSAEQQYVEVLLDKMIHEIEHQSTGF-QVALQALLM 152 Query: 124 TVL---SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 +L SR+++S + L + + Q I ++ LS VA +S L Sbjct: 153 DLLVYTSRYIESNRHDVLAPPSQVHEKISQIVQYINTNYQTPLTLSSVAQNFFVSQYYLS 212 Query: 181 KKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 + K ++ + I R+R A L + +S++ G+ S S+F VFK+ + Sbjct: 213 RTFKQATGFTFVEYINNIRIREAQRLLRETNHKVIDISEAVGFGSISHFGRVFKEVTRFS 272 Query: 240 PLHYVSQHRE 249 PL+Y + E Sbjct: 273 PLNYRRLNTE 282 >UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N3I2_9GAMM Length = 338 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 2/126 (1%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKD--WNLSMVASCLCLSPSLLKKKL 183 L L +V L+ ++ + +I++ ++ + VA L S L+++L Sbjct: 211 LPELLKEAPYVFLVKPNNTTSINAQIRRILQGNMDDSELPDFETVAHKLNTSTQTLRRRL 270 Query: 184 KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 K ENTS+ I R A+ L +I++++ G+ S F FK + GMTP Y Sbjct: 271 KEENTSFQAIKDQVRRDMAIYYLGDPNISINEIALKVGFTEPSTFHRAFKKWTGMTPGDY 330 Query: 244 VSQHRE 249 S+ + Sbjct: 331 RSEQAQ 336 >UniRef50_C9KWT1 Sensor protein n=8 Tax=Bacteroides RepID=C9KWT1_9BACE Length = 1476 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 82/191 (42%), Gaps = 23/191 (12%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKK-FVSL 138 +Q S P++ L + + A + A K ++ L + + L +K F Sbjct: 1285 FQISHIPVIILTAKNDEGAKTKAIT--LGANAYITKPFSKEYLLARIDQLLSERKLFRER 1342 Query: 139 MMYMLRNCVS------------------DSVYQIIESDIHK-DWNLSMVASCLCLSPSLL 179 + + N + + ++Q+IE ++ D+N+ +AS + LS S Sbjct: 1343 IRQQMENQTTTEEDSYEQYLVKKDVQFLEKIHQVIEENMDDSDFNIDTIASGIGLSRSAF 1402 Query: 180 KKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 KKLKS + ++ R+ ++ + ++S+++ + G+ + Y+ F+ Y Sbjct: 1403 FKKLKSLTGLAPVDLVKEIRLNKSIELIKSTDLSVSEIAFAVGFKDSGYYSKCFRKKYNQ 1462 Query: 239 TPLHYVSQHRE 249 TP Y+++ R+ Sbjct: 1463 TPREYMNEWRK 1473 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 1/123 (0%) Query: 126 LSRFLDSKKFVSL-MMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 L++ K+ L + + S + Q IE +A + +SP L+++LK Sbjct: 220 LAKKAHEKECRELSLRIRKQETASSRIVQEIEFRRQGVPGFDDLARHMNMSPRTLRRRLK 279 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 E TS+ I++ + A++ L I Q++ GY F FK + G TP Y Sbjct: 280 EEGTSFKNIVSDVQKEKAIHLLQTTNLPIQQIALELGYEDLPNFYRAFKRWTGKTPGDYR 339 Query: 245 SQH 247 + Sbjct: 340 QSN 342 >UniRef50_UPI00017895AE two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017895AE Length = 353 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 73/205 (35%), Gaps = 29/205 (14%) Query: 44 IIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQ 103 + + ++ +H +I + L L + + AQ Sbjct: 169 LFETMGPKEVSLSRYAHMLISELLSALEERGLMLN---------------MDTGEEQWAQ 213 Query: 104 HSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIH-KD 162 + ++E + L SR L S+ + + IE + +D Sbjct: 214 DDPLACRRQTEDKVKEMLALIKGSRNLGSRHNI------------QKAKRFIEENYAMED 261 Query: 163 WNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCG 221 +L VA + +S + L + KSE N ++ + + RM A L + + + G Sbjct: 262 LSLQEVADSVGMSVTYLSRTFKSETNMNFVKYLVQVRMEKARELLAESELSAQEAAYRVG 321 Query: 222 YNSTSYFISVFKDFYGMTPLHYVSQ 246 ++ +F FK F+G+TP Y Q Sbjct: 322 FSDYVHFSKTFKKFHGLTPSAYRKQ 346 >UniRef50_Q8AB44 Sensor protein n=5 Tax=Bacteria RepID=Q8AB44_BACTN Length = 1370 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFV--- 136 + S PI+ L R+ ++ A+ K +L ++ F+ KK Sbjct: 1190 LETSHIPIILLTAKNTVEDRIECYNAG--ADGYISKPFELKILEARINNFIMHKKNKQEE 1247 Query: 137 ----------SLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLK- 184 SL + D V +I S++ + D+++ +A L +S S L +K+K Sbjct: 1248 FRSNVEVNIDSLEPSSIDKEFLDKVISVINSNMSEGDFDVVQLADALAVSKSSLYRKMKL 1307 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + S + I R+++ L ++++V+ CG+++ YF + FK+ +G+TP Y Sbjct: 1308 ATGLSPIEFIRNIRLKHGSQLLKDKSISVAEVAYECGFSNPKYFATCFKEEFGVTPKEYQ 1367 Query: 245 S 245 Sbjct: 1368 K 1368 >UniRef50_C6D3W5 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3W5_PAESJ Length = 421 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 13/147 (8%) Query: 101 AAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIH 160 A Q + + E + E +A + + +K V M + + + Sbjct: 287 ALQGLLEDPDREQQAEEPQATELSFNTIHEKHRKAVQYM------------IEYVHTHYA 334 Query: 161 KDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQS 219 +D L +AS L +S + L + K +++ + R+ A L+ I +VS+ Sbjct: 335 EDITLEQLASQLYISKNYLNQLFKKVTGETFTNYVIRVRIEKAKVLLLEGKHLIYEVSEM 394 Query: 220 CGYNSTSYFISVFKDFYGMTPLHYVSQ 246 GY + YF ++FK + G+TP + Q Sbjct: 395 VGYQNVPYFTTLFKKYCGVTPSELMKQ 421 >UniRef50_A4XMI3 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMI3_CALS8 Length = 251 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Query: 115 KERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCL 174 KE + V+ + ++ ++ V SV+ + + L+ VA+ + L Sbjct: 109 KEEILEAVKKVVDEIRNYRENEDTLIENCDGDVIKSVFDYLNKHYAQQITLNDVANYVHL 168 Query: 175 SPSLLKKKL-KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 P L + L K ++ +I+T R++ A++ L +V+++ G++ YF VFK Sbjct: 169 HPVYLGRLLRKKVGKTFKEILTEVRLKKAISLLKNSSLKNYEVAEAVGFSDAQYFSQVFK 228 Query: 234 DFYGMTPLHYVS 245 YG+TP + Sbjct: 229 KIYGITPNEWKK 240 >UniRef50_C6CUY4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CUY4_PAESJ Length = 541 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 3/127 (2%) Query: 122 LFTVLSRFLDS-KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 L T +R +DS +K V+ R+ + V + I + + + +L +++ + L+PS L Sbjct: 413 LRTWTARTIDSYRKSVNSEDKDSRSSIIRKVQEFIHNHLEQA-SLHSISTHVYLNPSYLS 471 Query: 181 KKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 K K+E S+ + RM + + L + I ++S GY SYFI +FK +G+T Sbjct: 472 KIYKTETGEGISEYLLRARMEKSADLLAQTDEKIYEISVMLGYQKPSYFIQLFKKHFGIT 531 Query: 240 PLHYVSQ 246 P Y ++ Sbjct: 532 PQEYRNK 538 >UniRef50_C6CRT3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRT3_PAESJ Length = 582 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 79/235 (33%), Gaps = 14/235 (5%) Query: 15 EKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLN--- 71 V I++N K L+ + I+ ++ + + + Sbjct: 89 LNGVPIQLNRKSSFMLEPGMTIEAQSVG-------GQEVKLYRITFELFQLSEKSASHRM 141 Query: 72 KDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLD 131 +L+ PV + L + + + S+ +R ++ +L L Sbjct: 142 YELASFPVTGSIQQDQYQIQKLVFVIAEETTEGKRDASSGRSDSKRAELQMYELLELLLG 201 Query: 132 SKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSY 190 S VS + D L M+A + PS + K E N S Sbjct: 202 STPAVS---PGGDKRAIQKTIPYMHRAYDSDITLEMLADMAGMHPSYYSQMFKQELNMSP 258 Query: 191 SQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 +T RM A EL++ G+ + +++ GY + YF FK++ G P Y Sbjct: 259 ITFLTRIRMNRAKEELLLTGRKMGEIASRVGYKDSFYFSRRFKEYTGCAPTMYKE 313 >UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G6T3_ABIDE Length = 534 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 9/141 (6%) Query: 108 PAETESEKERTRAL--LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNL 165 + +S E + L FT+L+ D ++ + + +D L Sbjct: 398 ISNADSLNEIIQYLSKCFTLLAVQNDKN------FDERYQNMAKRILDYLNEYYSEDLTL 451 Query: 166 SMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNS 224 VA +S + + + LK N S+ Q++ + RM A + D + ++++ GYN Sbjct: 452 DSVADKFHMSKTYISRILKKYTNQSFLQLLISRRMDIARKMIAEDKFKLYEIAEKVGYND 511 Query: 225 TSYFISVFKDFYGMTPLHYVS 245 SYFI VFK YG+TP Y Sbjct: 512 FSYFIQVFKKKYGVTPNEYRR 532 >UniRef50_C4FUN9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUN9_9FIRM Length = 493 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 79/202 (39%), Gaps = 5/202 (2%) Query: 52 NTLVAHISHDIIKDYLRFLNKDLSQI-PVWQRSATPILTLPCLTPDVFRVAAQHSMMPAE 110 + LV H+ I K L+ DL Q + LT + S Sbjct: 279 DQLVGHLYEAIDKQNSIKLDADLDSFLAFCQERELAPQEVVQLTALIRHYFDIKSNQHTP 338 Query: 111 TESEKE-RTRALLFTVLSRFLDSKKFV--SLMMYMLRNCVSDSVYQIIESDIHKDWNLSM 167 T E + L F +LS+ L + + L + + V I +++ ++ Sbjct: 339 TSLLDEGANQPLTFALLSQHLKESLDLGGREKRHHLYPPIVNEVLAAIYERYNENISMKS 398 Query: 168 VASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTS 226 +A L ++ L + K E + S+ I R+ A + L+ +++Q++ GY + + Sbjct: 399 LADDLHVNVMYLGQLFKREVGMTLSRYINQYRLAIAKDLLIASKLSVAQIAVKVGYQNQA 458 Query: 227 YFISVFKDFYGMTPLHYVSQHR 248 YF VFK G++P Y + Sbjct: 459 YFYRVFKQSEGVSPKEYRQHYH 480 >UniRef50_C0Z8E4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z8E4_BREBN Length = 548 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 88/248 (35%), Gaps = 10/248 (4%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 ++++T+ + + L + + L I + + D ++ Sbjct: 35 STHAVLIVTKGSGRMLSESDQAALLDGSALVLSRESARQISADTDDPLRFLVFYFDALQQ 94 Query: 66 YLRFLNKDLSQIPVWQRSATPILTL--PCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 + N + ++ + + A + + P E + R + LL Sbjct: 95 QDQVSNDYSPSLSWHLDHSSCVFHQVDNSTELALTLYAHRQANDPLEAFQNQIRFQQLLH 154 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 + S + + V D + ++ + L +A+ L+P + Sbjct: 155 LIWSHAERQA-------TVETSSVVDQTISYMHTNYAEPITLDDLANRAGLTPRYYTEVF 207 Query: 184 KSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K + S + +T+CRM +A L K + +V++ GY YF FK G++P Sbjct: 208 KKKVGKSPIEYLTSCRMEHAKTLLRESNKRLREVARLVGYADEFYFSRRFKQQVGVSPTV 267 Query: 243 YVSQHRER 250 +V ++++ Sbjct: 268 FVRMNQKQ 275 >UniRef50_A5GD53 Transcriptional regulator, AraC family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GD53_GEOUR Length = 291 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 85/252 (33%), Gaps = 20/252 (7%) Query: 6 DQPCIVLLTEKDVWIRVN-GKEPISLKANHMALLN--CENNIIDVSSLNNTLVAHISHDI 62 P + D + R+ G + + + + ++ ++ + + I D+ Sbjct: 51 SHPAYSFVLTFDSYTRLAIGGKTVLSQPGQIMAIDPDAVHHEMTADETPRYIAIFIDRDL 110 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 K+L + P + T + E E+ LL Sbjct: 111 -------FEKELGRYPSIRPRPFRFRTFTP----GREMMGLLKEFMNEAEARLPAREPLL 159 Query: 123 -----FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 V + + ++ + V + I++ K ++ +A+ +S S Sbjct: 160 AAIGTRIVHALIRAAHGIITPDASIGNRVEIHRVIEYIQTHAGKKLSIGQLAAVAAMSTS 219 Query: 178 LLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 + K E + R+ A L +++ V+ SCG+ S S+F F+ FY Sbjct: 220 HFSRIFKRETGHPPLAYLNRVRLEQARKLLRTGECSVTSVALSCGFASPSHFTDSFRRFY 279 Query: 237 GMTPLHYVSQHR 248 G +P ++ ++ Sbjct: 280 GQSPTDFLKSYK 291 >UniRef50_A4CQ66 Activator protein MtlR n=10 Tax=Bacteroidetes RepID=A4CQ66_9FLAO Length = 292 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 69/151 (45%), Gaps = 7/151 (4%) Query: 105 SMMPAETESEKERTRALLFTVLSR------FLDSKKFVSLMMYMLRNCVSDSVYQIIESD 158 + E +S+ +R A+L + + + + +S+ N +S++ ++ + Sbjct: 138 KIEILEYKSDFQRLLAILNILNELGSTSEYQILNAEHLSVETQSKENERINSIFNFVKEN 197 Query: 159 IHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVS 217 + +L +A ++ + K N ++ Q + RM +A N L + +I+++ Sbjct: 198 YREPISLEEMADLTHMTVPSFCRYFKKVTNKTFVQFVNEYRMVHASNLLSENEMSITEIC 257 Query: 218 QSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 G+N+ S+F FK F GM+P Y +Q + Sbjct: 258 FESGFNNFSHFNKSFKAFTGMSPSEYRNQLK 288 >UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTF5_PAESJ Length = 294 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 17/243 (6%) Query: 19 WIRVNGKEPIS-----LKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKD 73 + E I L + ++ + V + I + + Y+ + + Sbjct: 59 DYELQAGEAIFVNSGELHSGYVVGGKPCSFDAVVFHSSLFSSGSIDY-LFDRYISPVLEK 117 Query: 74 LSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERT-RALLFTVLSRFLDS 132 ++P R P ++ + Q + ++ E T + LLF++L++ + Sbjct: 118 RYEVPAHLRR------EPGPGMELLAMLDQIFEVHRNEQAASELTIKGLLFSILAKLVSL 171 Query: 133 KKFVSLMMYMLRNCVSDS---VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENT 188 K + + V + IE + + L +A +S S + K Sbjct: 172 GKPSVRVKPEQEGYRIERLKTVIEYIEQNYAEPIPLQKLAELARMSESYFCRFFKRITTK 231 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 S + + + R++ A + L I +V+ G+NS SYF +VF+ +G TP Y S+ + Sbjct: 232 SPIEYMNSYRVQQAASRLRQTDAKIMEVALDVGFNSLSYFNTVFRQRFGCTPREYRSRLQ 291 Query: 249 ERT 251 + Sbjct: 292 VNS 294 >UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3X5_9BACT Length = 286 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 84/228 (36%), Gaps = 20/228 (8%) Query: 24 GKEPISLKANH-MALLNCENNIIDVSSLNN----TLVAHISHDIIKDYLRFLNKDLSQIP 78 G+ + + L+ EN+ + + V+ ++++ F S Sbjct: 69 GENEYPIPPGSAVLLVVPENHCYYLPEDSPYWRFLFVSVYGSELVRLVTDF---RRSHGF 125 Query: 79 VWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSL 138 + Q + + ++ + A V+S F + + Sbjct: 126 LLQHGTDSPVVASAWE-------LLKKCREKKLDNRYRASAAAYDFVMSLFSEPAGRGT- 177 Query: 139 MMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTC 197 ++ V+ +++ + ++ +A S ++ + E S + +T Sbjct: 178 ---HAQDDFLKRVHAYALANLSRPLSVGDLADAAGCSRWHFSRRFQQLEGKSPHEFVTDL 234 Query: 198 RMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 +MR AV L ++ +V+++CG+ SYF VF++ YG++P + S Sbjct: 235 KMRLAVRLLQTTNGSVKEVAENCGFEDASYFCKVFRNHYGVSPAGFRS 282 >UniRef50_C9PVL5 Sensor protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PVL5_9BACT Length = 858 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 102/256 (39%), Gaps = 30/256 (11%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 D C ++ T RV ++ +AL E NI D+ +++ ++ + + Sbjct: 619 DDVCQMVRTLLATRYRV-----LTAPNGEVALQLAELNIPDLV-VSDVMMPQMDGLELCR 672 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTV 125 L+ S P++ L T D R+A A+ K + LL Sbjct: 673 RLK---------QTTATSHIPVILLTARTLDEQRIAGYEHG--ADAYITKPFSAPLLLAR 721 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSD-----------SVYQIIESDI-HKDWNLSMVASCLC 173 + L S+K + L+ ++ + I +I D+ + + + Sbjct: 722 IHNLLQSRKQLKLVFAGADELANEEISKPDKVFVSKIRNEIHRNISDNDFGVEQLGVAVD 781 Query: 174 LSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVF 232 LS L +K+K+ S ++I R+ A + +IS+V+ G+ S SYF F Sbjct: 782 LSRVQLYRKVKALTGLSPVELIRATRLNRARKLIEGGATSISEVAYQVGFTSPSYFTKCF 841 Query: 233 KDFYGMTPLHYVSQHR 248 KD +G++P+ ++ ++ Sbjct: 842 KDQFGVSPIELLNSNK 857 >UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=Clostridiales RepID=C5EPF6_9FIRM Length = 550 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 2/139 (1%) Query: 114 EKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKD-WNLSMVASCL 172 E AL +++ F + + V + I + K+ +L+ VA+ + Sbjct: 411 ESHSITALKESLIRLFEGTMLLRDSQTASKYSQVLEEARAFIRENYAKEEISLNTVAARV 470 Query: 173 CLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 +SPS E ++ + +T RM A LM +++ GY + YF + Sbjct: 471 NISPSYFSSIFSQEMGVTFVEYLTGVRMERAKELLMCSNMKTTEIGYEVGYKDSHYFGYL 530 Query: 232 FKDFYGMTPLHYVSQHRER 250 FK G TP Y + RER Sbjct: 531 FKKTVGCTPKEYRAGSRER 549 >UniRef50_Q2RJ70 Transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJ70_MOOTA Length = 440 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 79/216 (36%), Gaps = 14/216 (6%) Query: 46 DVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRV----- 100 D+S + N + I I + L + + QI + + ++ L F + Sbjct: 220 DLSKIGNQIFMEIRRSDIDKAKKLLEQLVLQIFIQSKGQLEVIKGRSLELLSFLIRTSTE 279 Query: 101 -------AAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQ 153 S + E + + +L+ + ++ + D V + Sbjct: 280 YGVKFGEVIHLSDLKLREIDEADTVEKAVLWLLAVGNAFIELIAERNSSEGEGIIDRVVE 339 Query: 154 IIESDIHKD-WNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGK 211 I+ + + ++ +A LSP+ L + K + S ++ I R+ A L + Sbjct: 340 YIQKNYSSESLSVKEIARASYLSPAYLGQLFKKKMGYSLTEHINKVRIEQAKLLLRQTEQ 399 Query: 212 NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 I V+ G+ SYF VFK G++P Y ++ Sbjct: 400 TIESVAIQTGFKERSYFCKVFKKITGLSPNEYRRKN 435 >UniRef50_C5RE27 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RE27_CLOCL Length = 820 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 104/253 (41%), Gaps = 9/253 (3%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN--NIIDVSSLNNTLVAHISHDII 63 D+ IV + E + + ++ + L+ MA++ + I + + + + I++ + Sbjct: 30 DEIEIVKVLEGKIKVSIS-ESVCFLEKGEMAIIKHKEIHQIQSLENESLLQIIQINYKFM 88 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 + + L++ + + S L + + + + + E A+ Sbjct: 89 ETHFPHLSRISFENNLLNISKDINLNVASNLKQLINEMINYLSVRNQGY-EFHVISAIYK 147 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVS----DSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 S + +S + +N ++ + + IE + + N++ +A L L+ + Sbjct: 148 VFGSIISNVPYTISTEDELEKNNITFNRMKKIIEYIEQNYMNEININTLAEILHLNKYYI 207 Query: 180 KKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 K S Q IT RM A L+ + +I+ + SCG+ + YF VF++ Y Sbjct: 208 AHFFKKHTGLSLGQYITNLRMNKATELLIKNEDSITNIILSCGFKNIKYFYKVFREVYKC 267 Query: 239 TPLHYVSQHRERT 251 +PL Y + +ER+ Sbjct: 268 SPLEYKNNRQERS 280 >UniRef50_UPI0001C36481 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36481 Length = 293 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 83/237 (35%), Gaps = 10/237 (4%) Query: 24 GKEPISLKANHMALLNCENNIIDV---SSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVW 80 G + + + ++ + ++ + + + + DL Sbjct: 50 GSKSYRMDRGTLTFIDKRQIPFTNVIGGKYHERILIEVDEKWLVSMGKAMELDLIGFF-A 108 Query: 81 QRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMM 140 L L ++ +M + + LL +++ L Sbjct: 109 NYHGVYRLEGKHLAAVEKKLKKMEEVMGQKRAFASAEVKNLLISIIISMLYGAGTRCAEY 168 Query: 141 YMLRNCV-----SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQII 194 +M + + + Q I + + L +A + S L + K N + ++ I Sbjct: 169 HMPNGKMLRYAKAREIIQYIMEHYSEVYGLEDLAGIFYMDKSYLSRIFKEVTNFTVNEFI 228 Query: 195 TTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERT 251 R+ +A + L+ + ++ ++SQ GY SYF VFK + GM+PL Y R++ Sbjct: 229 NCQRIGHARDMLLDESLSMEEISQKLGYERLSYFDRVFKKYVGMSPLQYRKSKRKKN 285 >UniRef50_A7VFB6 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VFB6_9CLOT Length = 323 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 8/153 (5%) Query: 99 RVAAQHSMMPAETESEKERTRALLFT--VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIE 156 + Q +M+ +++ A+ + + +R + + S + L+ V Q I Sbjct: 176 KQNLQKNMLYLNIKAKMLELIAVAYKYDLFTRQVREDREESGTVENLK-----KVLQYIG 230 Query: 157 SDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQ 215 LS +A + ++ + K + ++ I R+ A L I Sbjct: 231 EHYGSPIRLSELAELVNMNEQYFCRYFKKNIGKTITEYINVIRVEKAATALAETEDKIID 290 Query: 216 VSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 ++ +CG+++ YFI FK GMTP Y + + Sbjct: 291 IASACGFDNIGYFIRRFKKEKGMTPSEYRKKSK 323 >UniRef50_C6XSX1 Sensor protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XSX1_PEDHD Length = 1370 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 77/185 (41%), Gaps = 17/185 (9%) Query: 81 QRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFV---- 136 + S P++ L TP V+++ + A+ K +L + LDS+ + Sbjct: 1186 RTSHVPVILLTARTPLVYKIEGYETG--ADDYITKPFNLNMLEARVWNLLDSRLKLRERY 1243 Query: 137 ---------SLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKS- 185 ++ + + IE +I + ++ + + +S L +K+K Sbjct: 1244 RKEISLQPKNVAITSPDEKFLEKAMAYIEQNISEASLSVEELGKEVGMSRVTLYRKIKGL 1303 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 + + + I + R++ A L + N+++V+ G+ YF FK+ +G TP Y S Sbjct: 1304 TDQTAIEFIRSVRLKRAAQLLEQNKLNVNEVAYMVGFQDIDYFRRCFKEQFGYTPKEYAS 1363 Query: 246 QHRER 250 Q E+ Sbjct: 1364 QAGEK 1368 >UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=Alteromonadales RepID=Q47ZJ7_COLP3 Length = 317 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 73/175 (41%), Gaps = 7/175 (4%) Query: 76 QIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKF 135 Q+ Q + +T+ + ++ R + + + T L +L+ F++ + Sbjct: 147 QLSNIQSNDNIWMTVKLIDAEIIRTNNKKNSIIDRL------TEVLFIQLLNSFIEKNEH 200 Query: 136 VSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQII 194 ++ + L+ + + Q+I + W L +++ + +S + L++K K+ S I Sbjct: 201 LTGFLSALKEPRLNKILQLIHQHPERQWTLDIISDVVGMSRATLQRKFKAAIGVSPMVYI 260 Query: 195 TTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 + RM A L ++ ++ G++ FKD YG TP + + + Sbjct: 261 SRWRMAKAYQLLKHSNLSLEGIADVIGFSDARTLSHAFKDHYGDTPSQFRKKLEK 315 >UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21JI5_SACD2 Length = 344 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDW-NLSMVASCLCLSPSLLKKKLK 184 L FL + + + +D V I++ D+ + VAS L +S + L++KL+ Sbjct: 223 LLNFLRTAPYHLVTEDPAHIRFADKVRNILKKDVSASMPSSDEVASQLHMSTTTLRRKLQ 282 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 ++NTSY ++ CRM A + L + ++++Q G++ S F FK + G TP Y Sbjct: 283 NDNTSYQRLKDECRMEAAFHLLNCADLSNNEIAQKLGFDEPSAFFRSFKKWTGQTPGEYR 342 Query: 245 SQ 246 ++ Sbjct: 343 AR 344 >UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2F1F Length = 288 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 96/247 (38%), Gaps = 12/247 (4%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 D+ I+ + + I ++ E + ++N + N+ + + + Sbjct: 38 DELEIIYIRNGSINITIDN-ELFTGTGGSFFIVNPGE--LHYMGSNDLNADYYTILFPLE 94 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERT------- 118 ++ F + D + +++ + + L P A S++ K Sbjct: 95 FISFQSNDYVENMLFKPMRSSHVILTHSLPYSEIYAEIISLLEKLIYINKYEKGFYQLDC 154 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 + LL +LS L S + + + + + + + + LS +A +S Sbjct: 155 KILLLEILSNIL-SIPDILVKKTSNASDMRREIITYVNDNYLEKITLSDLADEFHMSEKY 213 Query: 179 LKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 + + K N ++S+ + R+ YA N L +I+ V+ S G+ + SYFI FK+ YG Sbjct: 214 ISRYFKKHFNITFSKYVNHMRLLYAKNLLDTTNISITDVALSSGFPNVSYFIRSFKESYG 273 Query: 238 MTPLHYV 244 TP Y Sbjct: 274 KTPFSYR 280 >UniRef50_D2LZT6 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZT6_BACS4 Length = 512 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 10/192 (5%) Query: 57 HISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPD--VFRVAAQHSMMPAETESE 114 I I+ + N+ + QR + + L + V V+ +S + Sbjct: 322 QIHKSIMNLIQSYENEGADTLQTQQRILELLWIVSRLMNEMGVETVSPFYSFQANDYRQL 381 Query: 115 KERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCL 174 + T LL + + + L L + I H+D +L +A + L Sbjct: 382 RSETNELLQQMRQLYTKHYDQLELDSIFLM-------KRYILEHSHEDISLDKLAKKVGL 434 Query: 175 SPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 SP + K K + +Y +T CR+ A L K+I +++ GY+ +YF VFK Sbjct: 435 SPIYMSKLFKEKLGVNYIDFLTECRIEKAKQLLKRPDKSIKEITFDVGYHEPNYFSKVFK 494 Query: 234 DFYGMTPLHYVS 245 G++P Y Sbjct: 495 KMCGVSPKEYRK 506 >UniRef50_A4WEG5 Transcriptional regulator, AraC family n=5 Tax=Enterobacteriaceae RepID=A4WEG5_ENT38 Length = 279 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 89/248 (35%), Gaps = 14/248 (5%) Query: 7 QPCIVLL-TEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 C+ +L E+ + + +++ + + ++ A II Sbjct: 36 HQCLEILYVEEGFGVAIVDNRHYTMRPGRLFFFPPF--TLHKVMVDEQAEAIYRRTIIHL 93 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETES-----EKERTRA 120 + K L P Q+ L+ V +A H + E + Sbjct: 94 DHHAVLKVLRDFPQTQQRLQK-LSRRGGEAWVADMADCHPHIHHLFSGYHPPLTSESVAS 152 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 L+ ++ + D K + ++ V ++ + ++L +A L S S + Sbjct: 153 LIISLFAMLPDDKDGAP----GSSHGIASQVMFWLDEHYQQKFSLDALAGELGKSRSYVS 208 Query: 181 KKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 +K +E + T R+R A L+ +++ ++ G++ +YFIS FK G T Sbjct: 209 RKFHAETGEKIHDYLNTLRLRKACECLLHSNESVRDIATRVGFSDVTYFISAFKKGIGET 268 Query: 240 PLHYVSQH 247 PL Y H Sbjct: 269 PLQYRKNH 276 >UniRef50_D1PRZ9 DNA-bindng response regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PRZ9_9FIRM Length = 248 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 132 SKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSY 190 +KK + + + I + I + + +A L +SPS L + K E S Sbjct: 125 TKKMRKNLRSDTNSKHINEGKDYIYAHIKERITIEDLADELGVSPSYLSRLFKKETGMSV 184 Query: 191 SQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 S I ++ A N L ++ ++ ++S S+FI F++ GMTP Y + R Sbjct: 185 SAYIRQQKIEIAKNLLRFSDSSLIDIANQLAFSSQSHFIQQFREVTGMTPKKYRDESR 242 >UniRef50_C8ZXM2 DNA binding response regulator n=4 Tax=Enterococcus RepID=C8ZXM2_ENTGA Length = 495 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 3/142 (2%) Query: 111 TESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVAS 170 T T +L + + L K + + +IE ++ + A Sbjct: 352 TRIRASNTIQVLRQLFNEILQLAKDQP--QQKRYSEIVQKAVGMIEEHYTQELTVKSAAE 409 Query: 171 CLCLSPSLLKKKLKSEN-TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFI 229 L +S L + K E S++Q + R++ A L+ G+ I++++ + GYN+T+YF Sbjct: 410 ALHVSVVYLGQVFKKETELSFNQYVNFIRIKKAQQLLLHTGQTINEIADAIGYNNTNYFS 469 Query: 230 SVFKDFYGMTPLHYVSQHRERT 251 +FK G+TP + ++ + Sbjct: 470 KMFKKLNGLTPKEFREKYEQSY 491 >UniRef50_C6CT27 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT27_PAESJ Length = 535 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYA 202 R+ + ++ +H D +L +A + L P+ L K K S + + RM A Sbjct: 431 RSQYVQKIRDYVDKHLHLDVSLRALADYVNLHPTHLSKIYKLETGEGISDYVASVRMERA 490 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + L K I ++S GY +YFI VFK + +TP Y Sbjct: 491 CHLLKATDKKIYEISADIGYLDPAYFIKVFKRQFDVTPQEYR 532 >UniRef50_UPI0001C3678C two component transcriptional regulator, AraC family protein n=2 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3678C Length = 539 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 77/190 (40%), Gaps = 7/190 (3%) Query: 61 DIIKDYLRFLNKDLSQIPV-WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 DI+ + +++L Q+ + + L + + +++ + Sbjct: 347 DILAGQQKLSSRNLQQLGLDLTQMVYSWLGSMNIYAHMLFDNEENNKIYGRVALSSHNML 406 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 L +LS+ ++ K V + + D++ ++ ++ + ++ + L+P L Sbjct: 407 QYLEYLLSKAMEYKDVVE-----RPHTIVDTIRDYMDHHFQENLSRDDLSRLVFLNPDYL 461 Query: 180 KKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 + K E S S + R+ A L +S +S GY++ +YF VFK+ GM Sbjct: 462 SRLFKKEMGLSISSYLIQKRIDLAKELLSTTRTPVSVISSQAGYDNFAYFTKVFKEKTGM 521 Query: 239 TPLHYVSQHR 248 +P Y + + Sbjct: 522 SPNEYRKKCQ 531 >UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Oceanospirillaceae RepID=A6VXK4_MARMS Length = 353 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDW-NLSMVASCLCLSPSLLKKKLK 184 L FL + + L+M N + V ++ D ++ + VAS L +S S L+++L Sbjct: 219 LRGFLKTAPYQLLVMVENDNSLKSQVMAMLGKDFSREMPSADEVASALNMSVSTLRRRLN 278 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 E TSY I CR A+ + +I+ ++ G++ S F FK + GMTP Y Sbjct: 279 DEKTSYQSIKDDCRKEAAITYMNAPQLSINDIAALMGFDEPSAFFRSFKKWTGMTPGEYR 338 Query: 245 S 245 Sbjct: 339 K 339 >UniRef50_C6CXJ2 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXJ2_PAESJ Length = 289 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 1/162 (0%) Query: 86 PILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRN 145 PI+ +P + + E ++K + A ++ + + + + VS + + Sbjct: 116 PIIRRDPNSPIIHAFRKLLRSIAEEKITDKYQLSAKVYEWMIALVQTSREVSREISTSSS 175 Query: 146 CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSENTSYSQIITTCRMRYAVN 204 + ++ + L +A ++ L + KS+ TS + RM AV Sbjct: 176 SLIQRAKDFMKQHYAQPLTLDQLAEHCGVNKYHLCRLFQKSDQTSPLAYLRDRRMEAAVA 235 Query: 205 ELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 L + + + CG+ ++SYF VF+++ MTP Y + Sbjct: 236 LLRTTELPVQTIGEMCGFENSSYFGKVFREYMSMTPKEYRMK 277 >UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC74_9FIRM Length = 240 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 1/149 (0%) Query: 96 DVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQII 155 F A Q + K + + + +L++ + K+ + + + + +I Sbjct: 86 AEFEYAQQGIQLGVMDYLLKPASVSDVKELLNKLNEEKEITQGLDRENCSDIVREMINVI 145 Query: 156 ESDIHKDWNLSMVASCLCLSPSLLKKKL-KSENTSYSQIITTCRMRYAVNELMMDGKNIS 214 E L +A ++P L K ++S + RM A L I Sbjct: 146 EESYGMKLQLDAIAEKFHMTPEYLGNLFAKETGITFSNYLRQVRMEKAKELLTGTDMKIY 205 Query: 215 QVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 +V+ + GY YF VFK++ G++ + Sbjct: 206 EVACAVGYPDQKYFSKVFKEYAGVSAKQF 234 >UniRef50_C9B0J9 DNA binding response regulator n=2 Tax=Enterococcus casseliflavus RepID=C9B0J9_ENTCA Length = 252 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 7/186 (3%) Query: 72 KDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLD 131 +D ++ S P + AQ ++ + E L R + Sbjct: 57 EDCFELYKELLSFYPNAKAILYSAVESFAIAQKALRYDLIDYLVEPITNDFVYALDRGIQ 116 Query: 132 SKKFVSLMMYMLRN------CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 S +SL+ N + + + I + + L +A L LS + +K+ Sbjct: 117 SINQISLLHVEKNNEASPSLSLRHKILRYIHENYREHITLDTLADHLHLSRYHTSRLIKN 176 Query: 186 E-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 ++S + R+ A EL ++IS++S G+N +YF FK TP Y Sbjct: 177 TLGMTFSLYLMIYRIEVAKKELSTSDRSISEISVRVGFNDPNYFSKKFKKATSYTPKEYR 236 Query: 245 SQHRER 250 +R + Sbjct: 237 KIYRGK 242 >UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZVU5_9FIRM Length = 509 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 12/205 (5%) Query: 52 NTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPI--LTLPCLTPDVFRVAAQHSMMPA 109 + ++ IS DI + L K + + T + + + +V + Q + Sbjct: 297 SQIMQMISEDITRKDTDQLRKHFACLKEKYHDNTKYSAMYIKFVFSNVIQELFQENQFSG 356 Query: 110 ETESEKERTRAL----LFTVLSRFLDSKK----FVSLMMYMLRNCVSDSVYQIIESDIHK 161 E E E R + +L D+ K F+ M RN V+ +V I + Sbjct: 357 ERRLEHEIERLYNCRNIMEILEVTEDNIKEYEAFLDRSMSSSRNEVA-AVKNYIYQHYEE 415 Query: 162 DWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSC 220 D NL M+A + LS L K E + ++ I RM A L ++QVS+ Sbjct: 416 DLNLEMLAEKVYLSSGYLSFIFKKETGMNLNRYIRVFRMEKAKELLCSTNMKVAQVSERV 475 Query: 221 GYNSTSYFISVFKDFYGMTPLHYVS 245 G+ + SYF F+++YG +P Y Sbjct: 476 GFANVSYFCRSFREYYGSSPESYRK 500 >UniRef50_Q1VVA7 AraC-type DNA-binding domain-containing protein n=2 Tax=Flavobacteriaceae RepID=Q1VVA7_9FLAO Length = 306 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 87/251 (34%), Gaps = 13/251 (5%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIID------VSSLNNTLVAHISHD 61 P I + I + K +L + +I + S + I Sbjct: 52 PIIASMISGRKIIHLKNKATFDFLPGESVVLPAKKKMIIDFPDATLDSPTRCMALGIDSQ 111 Query: 62 IIKDYLRFLNKDLS---QIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERT 118 I++ + + L L T + + +S+ Sbjct: 112 KIQETIDVYQNATEIEESFTLGSNLNLSPLHLNNNTQVQHLLERLLQTFSSGHKSKDALL 171 Query: 119 RALLFTVLSRFLDSKKFVSLM---MYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 ++ ++ R L + +L+ Y+ N V + I D + +A C+S Sbjct: 172 DVMIKELILRLLQTNARGALLDENSYLFDNHRMAFVLKYIREYYKDDITVEDLADKACMS 231 Query: 176 PSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 S K K+ + + + + R++ A + +S+++ S G+NS+SYF++ FK Sbjct: 232 KSHFYKSFKNTLGETPMEYLNSERLKQAKKLIRTTSSKLSEIAFSTGFNSSSYFVTQFKK 291 Query: 235 FYGMTPLHYVS 245 GMTP + Sbjct: 292 QEGMTPSQFRK 302 >UniRef50_UPI0001851370 two component AraC family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851370 Length = 253 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELM 207 V + ++ H+D L +A +S + +K K + + + + RM+ A+ L Sbjct: 146 RKVEEYLKEYYHEDIKLQDIADTFYISREYISRKFKEHFHLTITDYLVDLRMKKAMELLD 205 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + ++++ GY YF VFK F G+TP Y + + Sbjct: 206 RTNLKVYEIAEKVGYVDDKYFRKVFKKFAGVTPNDYRQKDK 246 >UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N693_9GAMM Length = 342 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 1/113 (0%) Query: 137 SLMMYMLRNCVSDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIIT 195 ++ + + +SD V +++E +I +++ VA L +S L +KLK++N+SYS I+ Sbjct: 229 QILSRLFKRSISDKVRRLVEVNIADSEFDAEQVAKALNMSRQTLYRKLKNDNSSYSDIVE 288 Query: 196 TCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + A L ++ ++ G++ S F FK + G++P + Q++ Sbjct: 289 AVKKEKAFKLLKTTSTPLTVIAYDLGFSELSAFTRAFKRWTGLSPAEFRRQNQ 341 >UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LII8_9FIRM Length = 502 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 7/191 (3%) Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCL-TPDVFRVAAQHSMMP-AETESEKERTRALL 122 L++ L W+ A L C T ++ A+ + + T+ +E+ + Sbjct: 312 QRYELLDEFLKNAASWRILAVESLCGLCRDTFELLEFEAKGNGISLTGTDILREQMEECI 371 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDS----VYQIIESDIHKDWNLSMVASCLCLSPSL 178 +R + + L+N + I + + +L VA+ + L+P Sbjct: 372 SLEEARRIMEAFAGQCHLTELQNAPKSKNIQLAVEYINAHYAEQLSLEQVAASVYLNPDY 431 Query: 179 LKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 + K ++ +T R+ +V L + ++Q GY + SYF ++FK YG Sbjct: 432 FSRAFKMETGQTFVNYLTDVRLSRSVWLLENTALRVQMIAQQVGYYNASYFSTIFKKKYG 491 Query: 238 MTPLHYVSQHR 248 M+P Y + + Sbjct: 492 MSPYEYRRKEK 502 >UniRef50_C6JBV9 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBV9_9FIRM Length = 527 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 6/168 (3%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLM 139 ++ L + + + + ++ L ++ R ++ F++ Sbjct: 365 IEQIVFSYLHKNGIEAHTLFSSEERDELITKSLDAVPYMFNYLRYLIQRAVEYNSFIN-- 422 Query: 140 MYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCR 198 ++ V D V I +D + +M+A + L+P L + K TS ITT R Sbjct: 423 ---EKDSVVDIVLNYIHQHYSEDISRTMLADMVYLNPDYLARLFKKQTQTSIINYITTYR 479 Query: 199 MRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 + A L+ + V+ GY + SYF +FKD G TP Y + Sbjct: 480 LEKAKELLLNPDIPVGTVALKVGYGNYSYFSKLFKDVVGCTPNEYRKK 527 >UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VG28_PSEU5 Length = 312 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 1/126 (0%) Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKD-WNLSMVASCLCLSPSLLKKKLK 184 + ++ + + M VS V + I + + D L +A L +S L +KL Sbjct: 186 MIAGMNEQLLRDYLGRMRHEQVSLQVRKEIIALLSSDKLGLEHIAERLNMSGRNLHRKLA 245 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 E TS+ ++ R A+ L M G ++++++ + G+ S F FK + G +P Y Sbjct: 246 EEGTSFKELQDEIRQDLALRYLGMSGMSLNEIAFNLGFIDQSSFNRAFKRWTGGSPGQYR 305 Query: 245 SQHRER 250 RER Sbjct: 306 RALRER 311 >UniRef50_B7BD49 Sensor protein n=2 Tax=Parabacteroides RepID=B7BD49_9PORP Length = 1318 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 85/199 (42%), Gaps = 20/199 (10%) Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 I D N+ + + V S P + L R+ ++ A+ EK + LL Sbjct: 1121 IMDGFELCNEVKNDVNV---SHIPFILLTAQHNLQSRLKGLNTG--ADAYMEKPFSIELL 1175 Query: 123 FTVLSRFLDSKKFV-------------SLMMYMLRNCVSDSVYQIIESDIHKD-WNLSMV 168 +S L S++ + SL + + + + +E ++ + ++ M+ Sbjct: 1176 TAQVSNLLKSRELLNKTYLEKPFAPVASLAVSQVDDIFLHKLNDYLEENLSNEALSVEML 1235 Query: 169 ASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 A + +S S L +K+K S + I R++ A+ + IS+++ G++S +Y Sbjct: 1236 ADTMGMSTSSLYRKVKGLSGLSPNDFIRIARLKKAILLMQNGENRISEIAFQVGFSSPAY 1295 Query: 228 FISVFKDFYGMTPLHYVSQ 246 F + F+ YG TP Y+ Q Sbjct: 1296 FSTCFQKQYGKTPSEYLKQ 1314 >UniRef50_B0NUV9 Sensor protein n=3 Tax=Bacteroides RepID=B0NUV9_BACSE Length = 1473 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 102/272 (37%), Gaps = 31/272 (11%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 ++ +++ I+++ + +R K I ++ H ++ EN II + L I D Sbjct: 1204 KLNNEKETILIVEDNQ-ELRFFIK-TIFIQ--HFNVIEAENGIIGLEKSKKYLPDIIISD 1259 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 ++ + S PI+ L + R+ S A+ K + A Sbjct: 1260 VMMPEKDGIEMVRELREDMSTSHIPIVMLTAKSTIESRIEGLESG--ADDYITKPFSAAY 1317 Query: 122 LFTVLSRFLDSKKFVSLMM-----------------------YMLRNCVSDSVYQIIESD 158 L + +D +K + + D V + IE Sbjct: 1318 LKARIFNLIDQRKKLQALFCASLLPTSIEQQPGEGKEASPALSPNDRKFMDKVMKTIEKH 1377 Query: 159 IHK-DWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQV 216 + + + +A+ + +S S+ KKLK+ S + + RM+ A + D +++Q+ Sbjct: 1378 LDNGNLMVEDIANEVNMSRSVFFKKLKTLTGLSPVEFLKEIRMKRAAQLIETDEYSMAQI 1437 Query: 217 SQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + G N + YF FK YG+TP Y + Sbjct: 1438 AYMVGLNDSHYFSKCFKQQYGITPTEYKESRK 1469 >UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNQ4_HAHCH Length = 365 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 144 RNCVSDSVYQIIESDIH-KDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYA 202 ++ V ++ + ++ +L VA L LS L++ L E T++ +++ R A Sbjct: 255 NRKLTQRVRSLLRQTMATEETSLQKVAQTLHLSERSLQRHLSQEGTNFRELVDEVRQEIA 314 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTV 252 L +ISQ++ S G+N F FK ++ +P Y +E + Sbjct: 315 ERYLKSSSMSISQIAYSLGFNDAGNFSRAFKRWFSCSPETYRQSLQESPL 364 >UniRef50_A6L237 Sensor protein n=6 Tax=Bacteroides RepID=A6L237_BACV8 Length = 1319 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 95/249 (38%), Gaps = 16/249 (6%) Query: 5 SDQPC--IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDI 62 +D+P I L + ++ N E + NH+ + I NT Sbjct: 1081 TDKPVEDISTLQIPEFYMASNAGEESEEEPNHIITIEGLEEDIRRLESGNT--------- 1131 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 ++ N + QR+ L + + + T +E++ L Sbjct: 1132 -EEIAEEKNIETISAVAPQRATVIQLIEGEDNEMITHIIPPEELPEMVTAVPEEKSEQKL 1190 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKK 181 TV + K + + + + + +E +I + D ++ ++ L +S L K Sbjct: 1191 KTVWNHAYIDFKPSGTAITSMDEKLINHAVKYVEDNIARSDLSVEELSKELGMSRVHLYK 1250 Query: 182 KL-KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 KL + + I R++ A L +NIS+++ G+N+ YF FK+ +G+ P Sbjct: 1251 KLLAITGKTPIEFIRIIRLQRAAQLLRGSQQNISEIAYQVGFNNPKYFSRYFKEEFGILP 1310 Query: 241 LHYVSQHRE 249 + Q+R+ Sbjct: 1311 SAF--QYRQ 1317 >UniRef50_C6LBC5 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LBC5_9FIRM Length = 586 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 1/147 (0%) Query: 104 HSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDW 163 +S + + E E TR + L ++ + N ++ Q + +I Sbjct: 438 YSRVSSAAEIENINTRRQVLQWLDMLRNTLLDIVGNGENPGNQIARGARQYVLENIESHV 497 Query: 164 NLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGY 222 L A L +S L K E S+ I + ++ YA L +++++ GY Sbjct: 498 GLQEAADHLGVSAGYLSTIFKREYGQSFIDFINSTKIEYACRLLEEKELMVTEIACRLGY 557 Query: 223 NSTSYFISVFKDFYGMTPLHYVSQHRE 249 + YF VF+ + GM+P Y E Sbjct: 558 ENAYYFSKVFRKYTGMSPTSYQKHMTE 584 >UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonella enterica RepID=SIRC_SALTI Length = 295 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 45/128 (35%), Positives = 71/128 (55%) Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 L ++S F+ + ++ + VY II SD+ + W+ + VA L +S S LK+ Sbjct: 168 LMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLFMSVSSLKR 227 Query: 182 KLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 KL +E S+S+I RM A+ L M NISQV+ CGY++ SYFI++FK + +TPL Sbjct: 228 KLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPL 287 Query: 242 HYVSQHRE 249 ++ Sbjct: 288 SFMRTMNH 295 >UniRef50_B8I1I4 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I1I4_CLOCE Length = 285 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 97/253 (38%), Gaps = 30/253 (11%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 D + ++ ++ K K N + + + + S V ++ + Sbjct: 35 DYTEVKIVLSGYFKYIIDDKLYEVAKGNIIIINPGVQHEKIIPSG--VKVEEFNYGLTNI 92 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL---- 121 + K+L + + + S+ P+ TLP P++ + ET +E+E+ Sbjct: 93 HF----KELPENFLIEPSSLPVFTLPLYQPEIIKC-------INETINEQEKNEPYCDLF 141 Query: 122 -------LFTVLSRFLDSKKFVS-----LMMYMLRNCVSDSVYQIIESDIHKDWNLSMVA 169 L +L R + + K + + + + + + + + ++ + +L +A Sbjct: 142 IKSSIMKLTALLHRGMTANKERTEKTRLDIQTSEKTNIVNDILEYLSTNYMEQISLYRIA 201 Query: 170 SCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYF 228 + LSP + K K E S + R+ A LM I V++S GY YF Sbjct: 202 HNMYLSPVYISKIFKEETGESPINHLIRIRLTKARELLMSGNMPIKTVARSVGYEDAFYF 261 Query: 229 ISVFKDFYGMTPL 241 ++K +YG+ P Sbjct: 262 SKLYKKYYGIPPS 274 >UniRef50_A1A117 Transcriptional regulator, AraC family n=7 Tax=Bifidobacterium RepID=A1A117_BIFAA Length = 248 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 1/110 (0%) Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYA 202 + + I +H+ + ++A + L+P+ L + K E T+ SQ IT RM A Sbjct: 136 HSKAVNECLDYIHYHLHEKITVPILAEHVHLNPTYLSELFKRETGTAISQYITDKRMEAA 195 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTV 252 N L + +++Q Y S S+F VFK GMTP Y +++ + + Sbjct: 196 ENMLKYSEYSFDEIAQILAYRSQSHFSKVFKKHSGMTPGEYRTKYAQNGI 245 >UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDZ7_EUBSP Length = 515 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 8/211 (3%) Query: 42 NNIIDVSSLNNTLVAHISHD----IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDV 97 N D+ N L + D + + +F + +S I C Sbjct: 297 ENTFDLFEFENHLFNRLFEDAEQVLKNIFSKFKSNFVSSIETKNICFQIYYI--CYRVLK 354 Query: 98 FRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIES 157 R A S L TV F +K + +N + ++ + I Sbjct: 355 KREAIPPSSELLARIHSAPDIFILENTVNELFQYTKNQFN-GSNGTQNRIIENTIKFIHQ 413 Query: 158 DIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQV 216 ++ +L ++A L +S S L + K + S ++ + R+ A L ++ Sbjct: 414 NLATALSLEVIAEHLHISASHLSRTFKKYCDESLTEYVNKTRIEKAKEYLKDSNMLTYEI 473 Query: 217 SQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 + GYN +YF S+FK + G +P Y ++ Sbjct: 474 ANQVGYNDATYFSSIFKKYTGFSPSEYRQKY 504 >UniRef50_A8MEF5 Transcriptional regulator, AraC family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MEF5_ALKOO Length = 854 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 95/251 (37%), Gaps = 6/251 (2%) Query: 7 QPCIVLLTEKDVWIRVN-GKEPISLKANHMALLN-CENNIIDVSSLNNTLV-AHISHDII 63 + +L + + G LK N + L+N E I +N L+ I + Sbjct: 31 HSAVEILLVLQGNVSLGVGDHKYLLKENDLILINYNEIYSITRGKEDNLLLSLQIDPVTL 90 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 Y ++ + + + + +V ++S + LL Sbjct: 91 SQYDPNFSRLVFDCKSFMYCKDNQEKFDVVRYYMAKVVWEYSKKKPGYQLRIASNIHLLA 150 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSD--SVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 L L ++ L + ++ + I +I K +L +A +S L + Sbjct: 151 AHLVNNLTNENLNQLKSEIKDKDLARLKRILSYINENIDKKISLKTIAKNEHISYFYLSR 210 Query: 182 KLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 +K ++ + I T R+ AVN L+ K I++VS G+ + F +FK+ +G +P Sbjct: 211 FIKDNLGVTFQEYINTLRLDKAVNLLLSSNKTITEVSYESGFANIKLFNKLFKETFGASP 270 Query: 241 LHYVSQHRERT 251 L Y H+E + Sbjct: 271 LQYKKIHKESS 281 >UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERJ9_9FIRM Length = 294 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 87/240 (36%), Gaps = 13/240 (5%) Query: 12 LLTEKDVWIRVNGKEPISLKANHMALLNCENNII-----DVSSLNNTLVAHISHDIIKDY 66 +++ V+ + I + + ++ ++N I + + + K Sbjct: 60 IVSVDLTTYSVSAGDIIFVLPGQLHAISQKDNEIMEYENILFKSSLLKSSGYDLCNDKFI 119 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETE-SEKERTRALLFTV 125 + L+ PV P + + + + P + S K +L+T+ Sbjct: 120 QPLFSGSLNICPVINNQTPYY---PPVITAINEIDHLCDLRPYAYQLSIKAHLFQILYTL 176 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 +S K + L+ ++ I ++ ++ + +A+ S S K K Sbjct: 177 VSN-CGQNKIKPINQKSLKK--IKTILSYIANNFQENIAIEDIANYCFYSKSYFMKFFKE 233 Query: 186 E-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 S+ Q + R+ A L NI ++ + G+N+ SYF FK YG++P Y Sbjct: 234 TMGVSFIQYLNDYRLEIAAELLTTTTDNILDIAFATGFNNISYFNRCFKKKYGVSPRKYR 293 >UniRef50_A5I5L7 AraC-family transcriptional regulator n=10 Tax=Clostridium RepID=A5I5L7_CLOBH Length = 688 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 9/245 (3%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII-DVSSLNNTLVAHISHDIIKDYLR 68 ++ + E + I + + K + E + I +++ N L+ I Y Sbjct: 34 VIYVLEGSIKITIETESHRVNKQEIGIINPEEAHSIKSITNNNKVLIFQIDTSFFNKYYD 93 Query: 69 FLN---KDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTV 125 N P Q+ + L+ + +A + E E LL+ + Sbjct: 94 IENMFFYTDFSAPEAQKHEKYDVLRKYLSTLLCEIAQKGDNYEDVVE---EILVDLLYHL 150 Query: 126 LSRFLDSK-KFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 ++ F L ++ D + + I S+ + ++ +A LS L ++K Sbjct: 151 INNFHYLIYDEEELKENEVQFERYDRIIKYIYSNYNNKISIQDIARLEFLSSHYLSNEMK 210 Query: 185 -SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 S++ + R+ A+ L+ K IS++S+ G++ T YF FK Y TP+ Y Sbjct: 211 NKVGYSFNDFVNLTRVEEAIKLLLDTDKTISEISEELGFSHTRYFNKHFKKHYKCTPMQY 270 Query: 244 VSQHR 248 +++ Sbjct: 271 RKKYK 275 >UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RUC8_9CLOT Length = 479 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 3/163 (1%) Query: 83 SATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYM 142 + P L + + ++ + + A + RT + T + + ++ K Sbjct: 313 ACHPRHILAAAVSGLVKFDSKQAYLEAVNQMAAARTMHEIRTCIDSYYETCKGRP--ASA 370 Query: 143 LRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSENTSYSQIITTCRMRY 201 + + +I+ + +L+ VA L ++P L + K + S+ +T+ RM Sbjct: 371 GYSPLIQKALHVIDKSYKEPISLNSVAEQLNITPQYLSRLFMKEMSRSFVDYLTSYRMER 430 Query: 202 AVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 A + L I+ + GY YF ++FK G+TP Y Sbjct: 431 AKSLLQDTNMKINMICVQVGYQDAKYFCTLFKKITGVTPNQYR 473 >UniRef50_A9U7P8 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7P8_PHYPA Length = 194 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 3/191 (1%) Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTL--PCLTPDVFRVAAQHSMMPAETESEKER 117 + ++ L L K + +++ A + L +A S P E+ + Sbjct: 2 QEWVRRSLDQLEKKQAVASDYRQFAKDVAGELDKALRQLPAAASADASGRPPLEETRRFY 61 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 RA + L + ++ V + + + + +D NL M+A L ++ Sbjct: 62 CRAQYERWFADLLHPVLQGIRRKTEEHDPITSFVTEYMCTHLDEDINLDMMADKLNITSG 121 Query: 178 LLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 L K ++S + R+R A L I V+ GY + + FI +FK Sbjct: 122 YLSTYFKEKTGVNFSDYLNDLRIRTAKELLQNLDLRIQDVAARVGYRNVNSFIRMFKRHA 181 Query: 237 GMTPLHYVSQH 247 G+TP Y ++ Sbjct: 182 GITPGEYRRKY 192 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 1/130 (0%) Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 A + +LS + ++ + L + + I + + +L MVA + +SP+ Sbjct: 147 AYISLILSLLVRNRDHIQLQDLDSAENAIQASARYISTHFQEPVSLHMVADYVHMSPTYY 206 Query: 180 KKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 KK K + + +T R+ A L N+++++ CG+N +YF F+ +G+ Sbjct: 207 SKKFKQITGVGFKEYLTKTRLYEATELLTHTSLNVTEIAIRCGFNDGNYFGDAFRKEFGL 266 Query: 239 TPLHYVSQHR 248 +PL Y + + Sbjct: 267 SPLQYRKRQK 276 >UniRef50_A8RW54 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW54_9CLOT Length = 517 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%) Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDI-HKDWNLSMVASCLCLSPSLLKKKL-KSE 186 L + ++S + + N V + IE + + D L VA + ++ S K Sbjct: 399 LLSASVYISRLEKLRPNSVVQKARKYIEENYWNPDLRLDDVAGYVYINASYFSSVFSKEM 458 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 S+ +T R+ A++ L I +++ GY + S+F FK + G P + Sbjct: 459 GISFGDYLTKVRIEKAMDLLKNTHMKIYEIADLVGYQNPSWFNVAFKRYTGQKPGDFRK 517 >UniRef50_UPI000178A094 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A094 Length = 289 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 10/169 (5%) Query: 88 LTLPCL--TPDVFRVAAQHSM---MPAETESEKERTRALLFTVLSRFL----DSKKFVSL 138 L PCL D + A SM P +++EK +L L R L D +K S Sbjct: 117 LPFPCLYEVDDPYLEGAYKSMNDRFPTLSDTEKYEEISLFLVALFRSLKPIWDKRKVRSS 176 Query: 139 MMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTC 197 +N + + IE++ + L +A L LSP L K S ++ I Sbjct: 177 TYQTRKNHRVEHILTWIETNYTIPFRLDDMAKSLHLSPYHLSHLFKEATGISITEYIAAR 236 Query: 198 RMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 R+ ++ L K IS +++ G ++SYF +FK G+TP Y + Sbjct: 237 RIHQSIQLLATTKKPISLIAEEIGLTNSSYFCKLFKSQMGITPHQYRKK 285 >UniRef50_B1YJP0 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=B1YJP0_EXIS2 Length = 234 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELM 207 D + + I + ++ L +++ LS + ++ K + + S I T R+ A L Sbjct: 133 DQIAKYISTHYAEELTLQLMSERFYLSREYISRRFKQRFSVNLSDYIQTIRLNRAKELLG 192 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 I +++ GY+ YF VFK +GMTP + Sbjct: 193 ETDARIYEIALEVGYHDDKYFRKVFKKQFGMTPNEFRE 230 >UniRef50_C0C1J0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1J0_9CLOT Length = 544 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 109 AETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMV 168 A E K + L V+SR D +K S + + ++ KD +L + Sbjct: 405 ALEEFRKYLEQTLC--VISRQFDDRKKSS------GKTLITDILAYVDEHYSKDVSLGTI 456 Query: 169 ASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 A ++PS L + K E N + IT R++ A+ L +++V+++ GY T Y Sbjct: 457 AGKFFINPSYLSQLFKKEMNMKFIDYITDVRIKKALVLLETTSLTVNEVAEAVGYKDTRY 516 Query: 228 FISVFKDFYGMTPLHYV 244 F +F G TP Y Sbjct: 517 FREIFVKHMGKTPSQYR 533 >UniRef50_D1PME6 Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PME6_9FIRM Length = 323 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 102/259 (39%), Gaps = 16/259 (6%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNC------ENNIIDVSSLNNTLVAHIS 59 D P + + +++ + G ++ + EN I +SL ++ + I Sbjct: 61 DMPSFHIHHKFEIYYEIAGTCRYFVEGAAYIVNAGSVVMIGENQIHKTASLGDSPSSRIV 120 Query: 60 HDIIKDYLR-----FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESE 114 + ++YL F D +R+ + + Q + ET E Sbjct: 121 VNFSREYLEKVAAAFPEVDFFSFLTDERNHLLSAITVKQQNHIQSILQQMLDLEGETSPE 180 Query: 115 KERTRALLFTVLSRFLD----SKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVAS 170 + RA+L L L ++ + N + + + I + L+ +AS Sbjct: 181 DQALRAMLLATLLLELKALCVQQQCQGGEKGRVSNHIVEQIQAYIAQHYAEKLTLTGIAS 240 Query: 171 CLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFI 229 +SP L + K N S + I R++ A N + G++IS V+ G+ +T++F Sbjct: 241 QFYISPYYLSRLFKKSTNLSLIEYINGVRIKAAQNLIEKSGESISSVAGQTGFMTTAHFR 300 Query: 230 SVFKDFYGMTPLHYVSQHR 248 VFKD G++P Y Q++ Sbjct: 301 RVFKDATGLSPQQYRQQYK 319 >UniRef50_UPI0001787EAA two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787EAA Length = 447 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 1/112 (0%) Query: 137 SLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIIT 195 L ++ V D +++ I I D +L+ +A + +PS L + K + + I Sbjct: 336 QLRQDDMKFDVIDRIHRYILEHISGDVSLTAIAEEVHFNPSYLSRYYKQLTGQNLLEYIQ 395 Query: 196 TCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 +M A++ + + +++ G+ S SYF + FK G+TP Y + Sbjct: 396 AKKMEGALHLMQHTNMKLQEIAVRLGFESPSYFTTFFKKKMGVTPQEYRNTQ 447 >UniRef50_A1HMP5 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMP5_9FIRM Length = 251 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 7/135 (5%) Query: 115 KERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCL 174 K + L T+LSR+L K + + + V I+E+ + +L+ +A+ + + Sbjct: 103 KPISADELNTILSRYLPPKNTKPV-----YSPLITKVLTILENRYAERLSLTNIAATVHV 157 Query: 175 SPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMM-DGKNISQVSQSCGYNSTSYFISVF 232 +PS L ++ K+E S+SQ + R++ A + L+ +I+Q+++ G+ S Y ++F Sbjct: 158 NPSYLSRRFKAEVGYSFSQYLINLRLKIAKDLLISRPDLSIAQIAEQTGFASQQYLSALF 217 Query: 233 KDFYGMTPLHYVSQH 247 G+TP Y + Sbjct: 218 HRNTGLTPREYRKNN 232 >UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NBQ5_EUBSP Length = 563 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 70/198 (35%), Gaps = 6/198 (3%) Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 I + L + +Q I T+ +V+++ A E Sbjct: 366 QKQISRFFERLEQARLPFCQYQMYILEIFTVLMKLVNVYQLDTNVVFKGASDYIEAVLGL 425 Query: 120 ALLFTVLSRFLDSKK----FVSLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCL 174 L + F+ + + + + + Q ++ + ++++ + L + Sbjct: 426 HSLEEIKDWFIQACRQIGTLIQKERMASGKMLVEKARQYVDENYADAEFSVETLCESLHI 485 Query: 175 SPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 SP+ K E ++ +T RM+ A+ L + ++ GY+ +YF FK Sbjct: 486 SPAYFSTIFKKEAGINFISYLTDVRMKEAMRLLDETDEKTYMIAAKVGYSEPNYFSYAFK 545 Query: 234 DFYGMTPLHYVSQHRERT 251 G++P Y R++ Sbjct: 546 KQVGVSPSRYRKGLRDQQ 563 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 258 1e-67 UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Ent... 193 4e-48 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 177 3e-43 UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostri... 166 5e-40 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 166 9e-40 UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 T... 163 6e-39 UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 162 8e-39 UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=... 162 1e-38 UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=... 161 1e-38 UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=R... 161 2e-38 UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=E... 160 4e-38 UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=... 159 7e-38 UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 T... 159 1e-37 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 158 1e-37 UniRef50_C4ZBG0 Transcriptional regulator, AraC family n=5 Tax=C... 158 2e-37 UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing... 157 3e-37 UniRef50_A6BIB0 Putative uncharacterized protein n=1 Tax=Dorea l... 157 3e-37 UniRef50_C6LLK3 Putative two-component response regulator n=1 Ta... 157 4e-37 UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1... 156 4e-37 UniRef50_C1PBK0 Transcriptional regulator, AraC family n=1 Tax=B... 156 5e-37 UniRef50_B5CXD1 Putative uncharacterized protein n=1 Tax=Bactero... 156 6e-37 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 156 6e-37 UniRef50_A4XJ70 Transcriptional regulator, AraC family n=2 Tax=C... 156 6e-37 UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC... 155 2e-36 UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostri... 155 2e-36 UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clost... 154 2e-36 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 154 2e-36 UniRef50_Q2RGN4 Two component transcriptional regulator, AraC fa... 154 3e-36 UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=P... 153 4e-36 UniRef50_UPI0001788255 transcriptional regulator, AraC family n=... 153 5e-36 UniRef50_UPI0001788A43 two component transcriptional regulator, ... 153 5e-36 UniRef50_Q03FA9 Transcriptional regulator, AraC family n=1 Tax=P... 153 6e-36 UniRef50_C0Z8E4 Probable transcriptional regulator n=1 Tax=Brevi... 152 8e-36 UniRef50_C5D8H7 Two component transcriptional regulator, AraC fa... 152 8e-36 UniRef50_C5CTH9 Transcriptional regulator, AraC family n=1 Tax=V... 152 8e-36 UniRef50_C4ZAF9 2-isopropylmalate synthase n=2 Tax=Eubacterium R... 152 9e-36 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 152 1e-35 UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostri... 152 1e-35 UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryan... 152 1e-35 UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=... 152 1e-35 UniRef50_C9LA22 Transcriptional regulator, AraC family n=2 Tax=C... 152 1e-35 UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyri... 151 2e-35 UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1... 151 3e-35 UniRef50_A8MEF5 Transcriptional regulator, AraC family n=1 Tax=A... 151 3e-35 UniRef50_C5RE27 Transcriptional regulator, AraC family n=1 Tax=C... 150 3e-35 UniRef50_A8RIS8 Putative uncharacterized protein n=1 Tax=Clostri... 150 3e-35 UniRef50_C7G755 Transcriptional regulator, AraC family n=1 Tax=R... 150 3e-35 UniRef50_A7VQ18 Putative uncharacterized protein n=1 Tax=Clostri... 150 4e-35 UniRef50_C6CSY2 Two component transcriptional regulator, AraC fa... 150 4e-35 UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coproco... 150 6e-35 UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacte... 150 6e-35 UniRef50_C6LHD5 Putative transcriptional regulator YfiF n=1 Tax=... 149 9e-35 UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bactero... 149 9e-35 UniRef50_C6D710 Transcriptional regulator, AraC family n=1 Tax=P... 149 9e-35 UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 T... 149 9e-35 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 149 1e-34 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 149 1e-34 UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing... 148 1e-34 UniRef50_A4WEG5 Transcriptional regulator, AraC family n=5 Tax=E... 148 1e-34 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 148 1e-34 UniRef50_A9KN44 Transcriptional regulator, AraC family n=3 Tax=C... 148 2e-34 UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=... 148 2e-34 UniRef50_UPI0001788F54 two component transcriptional regulator, ... 148 2e-34 UniRef50_B0MKI2 Putative uncharacterized protein n=1 Tax=Eubacte... 148 2e-34 UniRef50_C3WEF1 Putative uncharacterized protein n=1 Tax=Fusobac... 148 2e-34 UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=... 148 2e-34 UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Ta... 148 2e-34 UniRef50_Q65MB5 Probable transcriptional regulator n=1 Tax=Bacil... 147 3e-34 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 147 3e-34 UniRef50_UPI0001C3522D two-component system, response regulator ... 147 3e-34 UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=... 147 4e-34 UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dict... 146 4e-34 UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostri... 146 5e-34 UniRef50_C6D1V9 Transcriptional regulator, AraC family n=1 Tax=P... 146 7e-34 UniRef50_C0EIL7 Putative uncharacterized protein n=1 Tax=Clostri... 146 7e-34 UniRef50_UPI0001C358FB two component transcriptional regulator, ... 146 8e-34 UniRef50_C5RE92 Transcriptional regulator, AraC family n=3 Tax=C... 146 8e-34 UniRef50_C7H3E2 Transcriptional regulator, AraC family n=4 Tax=C... 146 8e-34 UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein ... 146 9e-34 UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=C... 146 9e-34 UniRef50_A7B0Y7 Putative uncharacterized protein n=1 Tax=Ruminoc... 145 1e-33 UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=C... 145 1e-33 UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicu... 145 1e-33 UniRef50_C3QPX4 Transcriptional regulator n=9 Tax=Bacteroides Re... 145 1e-33 UniRef50_UPI0001B9ECE6 two component transcriptional regulator, ... 145 1e-33 UniRef50_UPI0001C3592F AraC-like transcriptional regulator n=1 T... 145 1e-33 UniRef50_C6CZ56 Two component transcriptional regulator, AraC fa... 145 1e-33 UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=C... 145 1e-33 UniRef50_UPI0001C36481 AraC family transcriptional regulator n=1... 145 1e-33 UniRef50_C5ET70 Putative uncharacterized protein n=1 Tax=Clostri... 145 2e-33 UniRef50_Q2BC36 Two-component response regulator n=1 Tax=Bacillu... 145 2e-33 UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=V... 145 2e-33 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 145 2e-33 UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus R... 145 2e-33 UniRef50_Q1VVA7 AraC-type DNA-binding domain-containing protein ... 144 2e-33 UniRef50_UPI0001C35ADD AraC family transcriptional regulator n=1... 144 2e-33 UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostri... 144 2e-33 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 144 3e-33 UniRef50_C0X5H9 AraC family transcriptional regulator n=22 Tax=E... 144 3e-33 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 144 3e-33 UniRef50_C6CT66 Two component transcriptional regulator, AraC fa... 144 3e-33 UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacteriu... 143 4e-33 UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryante... 143 4e-33 UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacte... 143 4e-33 UniRef50_D1PME6 Transcriptional regulator, AraC family n=1 Tax=S... 143 5e-33 UniRef50_C6D5X4 Two component transcriptional regulator, AraC fa... 143 5e-33 UniRef50_A6M2W7 Helix-turn-helix-domain containing protein, AraC... 143 5e-33 UniRef50_C5RGS5 Transcriptional regulator, AraC family n=1 Tax=C... 143 5e-33 UniRef50_A9KJM4 Two component transcriptional regulator, AraC fa... 143 5e-33 UniRef50_A9KLS8 Transcriptional regulator, AraC family n=1 Tax=C... 143 6e-33 UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. ora... 143 6e-33 UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Strepto... 143 7e-33 UniRef50_UPI0001788F00 two component transcriptional regulator, ... 143 8e-33 UniRef50_C6CTP9 Two component transcriptional regulator, AraC fa... 142 8e-33 UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostri... 142 9e-33 UniRef50_Q5WCV1 AraC/XylS family transcriptional regulator n=1 T... 142 9e-33 UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabac... 142 9e-33 UniRef50_A5I5L7 AraC-family transcriptional regulator n=10 Tax=C... 142 1e-32 UniRef50_UPI0001C35C03 two component transcriptional regulator, ... 142 1e-32 UniRef50_C6D5P5 Transcriptional regulator, AraC family n=1 Tax=P... 142 1e-32 UniRef50_C1P7P5 Transcriptional regulator, AraC family n=1 Tax=B... 142 1e-32 UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=... 142 1e-32 UniRef50_C1I9Z9 AraC family transcriptional regulator n=1 Tax=Cl... 142 1e-32 UniRef50_C0CH60 Putative uncharacterized protein n=1 Tax=Blautia... 142 1e-32 UniRef50_C6CTB8 Two component transcriptional regulator, AraC fa... 142 1e-32 UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bactero... 142 1e-32 UniRef50_A4CQ66 Activator protein MtlR n=10 Tax=Bacteroidetes Re... 142 1e-32 UniRef50_Q0SZ95 HTH-type transcriptional activator rhaS n=93 Tax... 142 1e-32 UniRef50_C6JFK6 Transcriptional regulator n=1 Tax=Ruminococcus s... 142 1e-32 UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryante... 142 1e-32 UniRef50_B9DS09 AraC family regulatory protein n=18 Tax=Streptoc... 141 1e-32 UniRef50_A6LWT0 Transcriptional regulator, AraC family n=1 Tax=C... 141 1e-32 UniRef50_A9U777 Predicted protein n=1 Tax=Physcomitrella patens ... 141 1e-32 UniRef50_A9KTC0 Transcriptional regulator, AraC family n=2 Tax=C... 141 2e-32 UniRef50_C4L9U6 Transcriptional regulator, AraC family n=1 Tax=T... 141 2e-32 UniRef50_B0NUV9 Sensor protein n=3 Tax=Bacteroides RepID=B0NUV9_... 141 2e-32 UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostri... 141 2e-32 UniRef50_UPI0001C3678C two component transcriptional regulator, ... 141 2e-32 UniRef50_B9Y678 Putative uncharacterized protein n=1 Tax=Holdema... 141 2e-32 UniRef50_A9U7P8 Predicted protein n=1 Tax=Physcomitrella patens ... 141 2e-32 UniRef50_UPI0001787F16 transcriptional regulator, AraC family n=... 141 2e-32 UniRef50_A8SRM1 Putative uncharacterized protein n=1 Tax=Coproco... 141 2e-32 UniRef50_C4FY13 Putative uncharacterized protein n=1 Tax=Catonel... 141 2e-32 UniRef50_A7VFB6 Putative uncharacterized protein n=1 Tax=Clostri... 141 2e-32 UniRef50_A0AET6 Complete genome n=16 Tax=Listeria RepID=A0AET6_L... 141 3e-32 UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vi... 141 3e-32 UniRef50_C6I5T7 AraC family transcriptional regulator n=18 Tax=r... 141 3e-32 UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein ... 141 3e-32 UniRef50_C7IFZ3 Transcriptional regulator, AraC family n=1 Tax=C... 141 3e-32 UniRef50_C6QRS7 Two component transcriptional regulator, AraC fa... 141 3e-32 UniRef50_C6CZ23 Two component transcriptional regulator, AraC fa... 141 3e-32 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 140 3e-32 UniRef50_C6LB63 Putative response regulator receiver domain prot... 140 3e-32 UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Ther... 140 4e-32 UniRef50_C6CWF4 Two component transcriptional regulator, AraC fa... 140 4e-32 UniRef50_A8RL67 Putative uncharacterized protein n=1 Tax=Clostri... 140 4e-32 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 140 4e-32 UniRef50_C6JBV9 Two component transcriptional regulator n=1 Tax=... 140 4e-32 UniRef50_C2KWQ1 AraC family transcriptional regulator n=1 Tax=Or... 140 4e-32 UniRef50_B0NGA4 Putative uncharacterized protein n=1 Tax=Clostri... 140 4e-32 UniRef50_UPI0001C365B5 response regulator receiver protein n=1 T... 140 4e-32 UniRef50_C6CXJ2 Transcriptional regulator, AraC family n=1 Tax=P... 140 4e-32 UniRef50_B6FKZ8 Putative uncharacterized protein n=1 Tax=Clostri... 140 4e-32 UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Ther... 140 5e-32 UniRef50_A7VU71 Putative uncharacterized protein n=1 Tax=Clostri... 140 5e-32 UniRef50_C0EGN7 Putative uncharacterized protein n=1 Tax=Clostri... 140 5e-32 UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=D... 140 5e-32 UniRef50_B1HND5 YbbB, ABC-type Fe3+-hydroxamate transport system... 140 5e-32 UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=C... 140 5e-32 UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostri... 140 5e-32 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 140 5e-32 UniRef50_Q2RJ70 Transcriptional regulator, AraC family n=1 Tax=M... 139 5e-32 UniRef50_B2TRB4 Transcriptional regulator, AraC family n=5 Tax=C... 139 5e-32 UniRef50_Q71VU1 Transcriptional regulator, AraC family n=21 Tax=... 139 6e-32 UniRef50_C4Z3B4 AraC family transcriptional regulator, L-rhamnos... 139 6e-32 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 139 6e-32 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 139 6e-32 UniRef50_C6CRZ9 Two component transcriptional regulator, AraC fa... 139 7e-32 UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 T... 139 7e-32 UniRef50_A6LR84 Transcriptional regulator, AraC family n=2 Tax=C... 139 7e-32 UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillu... 139 7e-32 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 139 7e-32 UniRef50_A7M0D3 Sensor protein n=1 Tax=Bacteroides ovatus ATCC 8... 139 9e-32 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 139 9e-32 UniRef50_C0EDY4 Putative uncharacterized protein n=1 Tax=Clostri... 139 1e-31 UniRef50_Q0TS97 Transcriptional regulator, AraC family n=6 Tax=C... 139 1e-31 UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=... 139 1e-31 UniRef50_A8VZY4 Response regulator receiver protein n=1 Tax=Baci... 139 1e-31 UniRef50_D1N277 Transcriptional regulator, AraC family n=1 Tax=V... 138 1e-31 UniRef50_C4L2Y3 Two component transcriptional regulator, AraC fa... 138 1e-31 UniRef50_C6LKL3 Putative response regulator receiver domain prot... 138 1e-31 UniRef50_C6J7M7 Response regulator n=2 Tax=Bacillales RepID=C6J7... 138 1e-31 UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonel... 138 2e-31 UniRef50_A7B7P4 Putative uncharacterized protein n=1 Tax=Ruminoc... 138 2e-31 UniRef50_C7G8V4 Transcriptional regulator, AraC family n=2 Tax=C... 138 2e-31 UniRef50_D2LTH2 Two component transcriptional regulator, AraC fa... 138 2e-31 UniRef50_C7G788 Transcriptional regulator, AraC family n=2 Tax=B... 138 2e-31 UniRef50_B6FM02 Putative uncharacterized protein n=2 Tax=Clostri... 138 2e-31 UniRef50_A4ARE0 Putative AraC-family transcriptional regulator n... 138 2e-31 UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostri... 138 2e-31 UniRef50_C4Z7U7 LacI family transcriptional regulator n=1 Tax=Eu... 138 2e-31 Sequences not found previously or not previously below threshold: UniRef50_D1PIK0 Putative pectin acetylesterase n=1 Tax=Subdoligr... 158 2e-37 UniRef50_C6IWJ9 Transcriptional regulator n=1 Tax=Paenibacillus ... 154 3e-36 UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteri... 153 7e-36 UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerot... 150 3e-35 UniRef50_C3R936 Transcriptional regulator n=2 Tax=Bacteroidales ... 150 4e-35 UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Rum... 150 4e-35 UniRef50_Q7UYE3 L-rhamnose operon transcriptional activator n=1 ... 150 4e-35 UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecali... 149 1e-34 UniRef50_C7GHF4 Transcriptional regulator, AraC family n=1 Tax=R... 149 1e-34 UniRef50_UPI0001969E72 hypothetical protein BACCELL_04741 n=1 Ta... 148 2e-34 UniRef50_C5EQL5 Transcriptional regulator n=1 Tax=Clostridiales ... 148 2e-34 UniRef50_A4BH94 Transcriptional regulator, AraC/XylS family prot... 148 2e-34 UniRef50_P32677 Uncharacterized HTH-type transcriptional regulat... 147 3e-34 UniRef50_C6CWE3 Transcriptional regulator, AraC family n=1 Tax=P... 147 3e-34 UniRef50_C3X327 AraC family transcriptional regulator n=1 Tax=Ox... 147 4e-34 UniRef50_C9KMJ8 Methylphosphotriester-DNA alkyltransferase n=1 T... 146 8e-34 UniRef50_C3SIM7 Membrane protein n=86 Tax=Enterobacteriaceae Rep... 146 8e-34 UniRef50_Q8YSB8 Transcriptional regulator n=2 Tax=Nostocaceae Re... 145 1e-33 UniRef50_C9KN89 Transcriptional regulator, AraC family n=1 Tax=M... 145 1e-33 UniRef50_UPI0001B9ED63 transcriptional regulator, AraC family n=... 145 1e-33 UniRef50_C6J070 Two component transcriptional regulator n=1 Tax=... 145 2e-33 UniRef50_C6IZN9 AraC family transcriptional regulator n=1 Tax=Pa... 144 2e-33 UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostri... 144 2e-33 UniRef50_C6D3K3 Transcriptional regulator, AraC family n=1 Tax=P... 143 6e-33 UniRef50_A7B0D2 Putative uncharacterized protein n=1 Tax=Ruminoc... 142 9e-33 UniRef50_UPI000178AA6A transcriptional regulator, AraC family n=... 141 2e-32 UniRef50_A9KSF8 Transcriptional regulator, AraC family n=1 Tax=C... 141 3e-32 UniRef50_UPI0001692C08 transcriptional regulator (AraC/XylS fami... 140 4e-32 UniRef50_A6LD39 Transcriptional regulator n=3 Tax=Bacteroidales ... 140 4e-32 UniRef50_A9KRL7 Transcriptional regulator, AraC family n=1 Tax=C... 140 4e-32 UniRef50_Q5WIZ4 Putative uncharacterized protein n=1 Tax=Bacillu... 140 5e-32 UniRef50_C6LL87 Transcriptional regulator, AraC family n=1 Tax=B... 140 5e-32 UniRef50_UPI0001C3766F two-component response regulator n=2 Tax=... 139 6e-32 UniRef50_C6QSM7 Transcriptional regulator, AraC family n=1 Tax=G... 139 6e-32 UniRef50_Q5WK82 AraC/XylS family transcriptional regulator n=1 T... 139 7e-32 UniRef50_C3RN82 Transcriptional regulator n=2 Tax=Bacteria RepID... 139 7e-32 UniRef50_A8SS64 Putative uncharacterized protein n=1 Tax=Coproco... 139 7e-32 UniRef50_UPI0001789C32 transcriptional regulator, AraC family n=... 139 7e-32 UniRef50_C9B1F2 Transcriptional regulator n=4 Tax=Enterococcus R... 139 8e-32 UniRef50_C9KN97 Putative AraC-type DNA-binding domain-containing... 139 8e-32 UniRef50_C0EDX0 Putative uncharacterized protein n=1 Tax=Clostri... 139 1e-31 UniRef50_C6D490 Two component transcriptional regulator, AraC fa... 139 1e-31 UniRef50_C0BFD5 Putative uncharacterized protein n=2 Tax=Clostri... 138 2e-31 UniRef50_Q64XT7 Transcriptional regulator n=13 Tax=Bacteroidales... 138 2e-31 UniRef50_C6D019 Transcriptional regulator, AraC family n=1 Tax=P... 138 2e-31 UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostri... 138 2e-31 UniRef50_Q9KBM0 Transcriptional regulator (AraC/XylS family) n=1... 138 2e-31 UniRef50_UPI0001B4A5A3 transcriptional regulator n=1 Tax=Bactero... 138 2e-31 UniRef50_C5D6R8 Transcriptional regulator, AraC family n=7 Tax=B... 138 2e-31 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 253/253 (100%), Positives = 253/253 (100%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH Sbjct: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA Sbjct: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK Sbjct: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP Sbjct: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 Query: 241 LHYVSQHRERTVA 253 LHYVSQHRERTVA Sbjct: 241 LHYVSQHRERTVA 253 >UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Enterobacteriaceae RepID=ENVY_ECOLI Length = 253 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 143/250 (57%), Positives = 191/250 (76%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 M++ S +PC+V+LTEK+V + VN +L N++A C NN+I++S+LN+ L+ HI+ Sbjct: 1 MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR 60 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 +II DYL FLNK+L+ + W R ATP++ TP+VFR+AA HS E E TRA Sbjct: 61 NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA 120 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 LLFTVLS FL+ +F++L+MY+LR+ V DSV +II+SDI WNL +VAS LCLSPSLLK Sbjct: 121 LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK 180 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 KKLK+ENTSYSQI+T CRMRYAV L+MD KNI+QV+Q CGY+STSYFISVFK FYG+TP Sbjct: 181 KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP 240 Query: 241 LHYVSQHRER 250 L+Y+++ R++ Sbjct: 241 LNYLAKQRQK 250 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 131/244 (53%), Gaps = 2/244 (0%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDY 66 P +++ + + + N I++ ++ ++ + VA I+ I Sbjct: 21 YPGVIICSINETILTFNDGNKITIAPGNLIFVDPR-QLTITHYGELENVALITQKTISLL 79 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 + LN D I ++ +P + C +F+ AA S + +EK R R+L+ ++ Sbjct: 80 VSALNSDSL-IHSYKAHNSPFIIRKCPDIAIFKYAANLSHKSDLSCAEKLRKRSLMLALM 138 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE 186 S FLD + F+ L+M +L ++ V +I S+I DW+L+++AS L +SPSLLKKKL++E Sbjct: 139 SLFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLMSPSLLKKKLQAE 198 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 T+YSQ++T CRM+ A+ L D + + + CGY S SYFI+VF+ +G+TP Y + Sbjct: 199 QTTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRKHFGITPTEYQDK 258 Query: 247 HRER 250 + Sbjct: 259 RQHH 262 >UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR78_9CLOT Length = 281 Score = 166 bits (422), Expect = 5e-40, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 89/246 (36%), Gaps = 8/246 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI---IDVSSLNNTLVAHISHD 61 I L + +N ++ L+ M ++ + S + S D Sbjct: 38 HSYYEIYYLLSGKCKMFIN-QDIYYLEPGDMTIIPPLEVHKALYEPSWEAERFGIYFSRD 96 Query: 62 IIKDYLRFLNKDLS-QIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 + +L ++ I + P P + + ++ + + + + Sbjct: 97 TVTSFLSLCGREAFGHIFSQPKRTIPSEFRPKIEELLAQMQDEEKQGDSYCQIQLCSLLH 156 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 + VL R ++++ + V + + + L VA+ +SP+ Sbjct: 157 QILVVLGRCQEARREGHALEEAEEAMV--RAARYMNQHYQEGVTLGQVAAFANMSPTYFS 214 Query: 181 KKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 KK K S + + + R++ A + L +++ V+ +CG++ +YF VF+ G++ Sbjct: 215 KKFKSSTGLCFKEYLNYIRVQKASDMLRNTDLSVTGVAMACGFSDGNYFGDVFRRLTGVS 274 Query: 240 PLHYVS 245 P Y Sbjct: 275 PREYRK 280 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 166 bits (420), Expect = 9e-40, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 C++ + + E + + +D N +S D + Sbjct: 3 PLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIQVDKCVEN---FVLVSRDTL 59 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 +L L ++ ++ ++ + ++ VF+ AQ S +E R RAL+F Sbjct: 60 SLFLPMLKEEALKLHAHKKVPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLRKRALIF 119 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 +LS FL+ +F+ L++ +L+ + V +I ++I +W L+ +AS L +SPSLLKKKL Sbjct: 120 ALLSVFLEDTQFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKL 179 Query: 184 KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + E TSYSQ++T CRM+ A+ +++ G +I +V+ SCGY+S SYFI VF+++YGMTP Y Sbjct: 180 REEGTSYSQLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEY 239 Query: 244 VSQHRER 250 + + Sbjct: 240 QERSAQE 246 >UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWY8_9BACL Length = 293 Score = 163 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 90/257 (35%), Gaps = 18/257 (7%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII-----DVSSLNNTLVAHIS 59 D I L + + + + A + L+ +S + ++ + Sbjct: 33 HDAWEIYYLVSGERCYFIKDQ-IYRIGAGDLVLIPVNVLHKTSPSGKLSQPHERILVNFR 91 Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTLPC-----LTPDVFRVAAQHSMMPAETESE 114 +++ L ++L Q+ P+L L + + R+ A+ E Sbjct: 92 TEVVSALLPGREEELEQLFAK----YPVLRLSAEEQQLVQQLLARMLAEQKQQAGGYEEY 147 Query: 115 KERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSD--SVYQIIESDIHKDWNLSMVASCL 172 + A L L R +++ + + V + I + ++ +LS +A+ Sbjct: 148 CQLLLAELLLNLLRMANARPNHDGEEGGGKRPYREIAEVARYINAHYDENLSLSDLANRF 207 Query: 173 CLSPSLLKKKL-KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 LSP L + + I R+ A L +++++ GY S ++F V Sbjct: 208 HLSPYYLSHLFPRVTGLTLVAYINRVRIEEACALLRETELPVTEIAYRVGYQSGTHFGRV 267 Query: 232 FKDFYGMTPLHYVSQHR 248 FK ++P Y + R Sbjct: 268 FKKAKAVSPQSYRREQR 284 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%) Query: 150 SVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMM 208 I+ + L VA +SP K K ++ +T R+ A L Sbjct: 412 KAKDYIDRHYAEPLTLEEVAEQAGISPYYFSKLFKEHFGITFIDYVTNVRIERAKEALAE 471 Query: 209 DGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 +++ ++ S GYN +YF VFK G++P Y + + R Sbjct: 472 TDQSLKEICFSVGYNDPNYFSRVFKKQTGLSPSEYRKKVQAR 513 >UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C0B Length = 288 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 95/260 (36%), Gaps = 19/260 (7%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSL---NNTLVAHISHD 61 D + L + + + ++A + ++ + S ++ LV +I+ + Sbjct: 35 HDHYELYYLLSGERIYFIKDRS-YRVRAGDLVFVDRNAVHKTLDSGRPDHDRLVLYINPE 93 Query: 62 IIKDYL--RFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVA-------AQHSMMPAETE 112 + D L + L + W PIL LP + H + Sbjct: 94 LFADLAVPPELAEGLKEPFGWD---VPILRLPSPASEAVERMVGDMVNEMIHPQAGSSWL 150 Query: 113 SEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 LLF SR L S + + + +V + + + + L VA Sbjct: 151 LRHRTVELLLFAYRSRHL--GMVRSADTEPVLHPKTQAVVRYLNDNYRQALTLPEVAEAF 208 Query: 173 CLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 +SP L + K ++S + R++ A L +I+ ++ G+++ S+F + Sbjct: 209 RISPHYLSRLFKQTTGFTFSDYLNLLRVKEAQRLLRESDDSITDIAWRSGFSNFSHFGKM 268 Query: 232 FKDFYGMTPLHYVSQHRERT 251 FK ++P Y Q+R R+ Sbjct: 269 FKRTVQLSPRAYRQQYRMRS 288 >UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C33 Length = 293 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 9/252 (3%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLN-CENNIIDVSSLNNTLVAH--I 58 + D I + E + I +K + ++ +++ SS +N LV + I Sbjct: 33 QHTHDFIEISYVEEGSG-YHYVEDQLIPIKRGDLFVIPIGTSHVFRPSSQDNQLVIYNCI 91 Query: 59 SHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERT 118 + + L+ + + +++ ++P + + M E + R Sbjct: 92 FRTCLLEQLKSVICESTKLHSLLYGSSPSAKWLQYQDKFDKFLSIMHGMFREYLKKGPRY 151 Query: 119 RALLFTVLSR---FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 L+ L + L + M+ N + D++ Q I + + VA +S Sbjct: 152 EFLMMGQLIQVLAMLQRYECDGSMVSTPTNNMDDAI-QYINDHFATNLTVQQVAERSFMS 210 Query: 176 PSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 PS ++ K ++ Q + R++ L +I + + GY +F S+F+ Sbjct: 211 PSHFQRLFKKTTGVTFMQFLQNIRVQRCCELLKSTEISIQEAANQVGYQDMKFFHSLFRK 270 Query: 235 FYGMTPLHYVSQ 246 G+TP Y Sbjct: 271 KTGVTPREYRRS 282 >UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PMJ1_9FIRM Length = 285 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 85/248 (34%), Gaps = 11/248 (4%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 D I L+ +V G +L+ + L I + + + + Sbjct: 41 DHYLIHLVVAGKGVYQV-GGVSHTLQEGDLFLAKPNQLITYAADETDPWEYY----WVGF 95 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA-LLFT 124 NK + Q P C P R A + + E + E L+ Sbjct: 96 NGACANKLVQQTPFSDLHPVH----HCKDPQAVREALYNIYLSRGPEPQCEALMTGYLYI 151 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL- 183 ++ + + + + S + I+ + D ++ +A + +S S L + Sbjct: 152 FMAHLMKEARDAMPNVGSSSSQYVLSAIKYIQFNYSHDISVDDIAKAVGVSRSHLYRVFM 211 Query: 184 KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + S +T R+ A + L +I++++ S G+ YF VFK G+ P Y Sbjct: 212 ANVGQSPIDYLTNYRISEACSLLKNSNLSIAEIAVSVGFFDQFYFSRVFKKVKGVPPSKY 271 Query: 244 VSQHRERT 251 ++ + Sbjct: 272 LATLEKEQ 279 >UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=Enterobacteriaceae RepID=B5XZ22_KLEP3 Length = 287 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 92/249 (36%), Gaps = 8/249 (3%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDI 62 + D P + ++ + R G+ L+AN + + ++ L+ I D Sbjct: 36 VQVDFPRLNIILNGQLPDRALGENASPLEANDVLYIPGDSWNCPQWQAP-CLLLSILFDK 94 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 + + + I V ++ L A M + E+ R+++ Sbjct: 95 QRLECSLQHWNGKAITVVEKRQA--LRRGPRVGSFLLQALNELRMQPQ---EQRTARSIV 149 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 ++LS D + + + +++ Q +++ + + VA LSP+ L Sbjct: 150 VSLLSHCHDLLGSQAQTSSRSQ-ALFEAIRQYMDAHYAEPLSRESVAQAFYLSPNYLSHL 208 Query: 183 LKSEN-TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 + +++ + R+ A L + ++ +CG+ ++YF +F+ +P Sbjct: 209 FQKCGPMGFNEYLNHIRLEQARMLLKGHDMKVKDIAHACGFADSNYFCRLFRKTTERSPS 268 Query: 242 HYVSQHRER 250 Y Q+ + Sbjct: 269 EYRRQYHSQ 277 >UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA55 Length = 275 Score = 159 bits (403), Expect = 7e-38, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 88/245 (35%), Gaps = 10/245 (4%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDI 62 + + + + W+++ +E + + L+ + + SH Sbjct: 39 YTVSYNKLYFILDGEGWVKIGDEELYPV-PGQLVLMPARTRQSYSVISGRPYLKYWSH-- 95 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 D L+ P +F+ ++T + + R ++++ Sbjct: 96 ----FSATVGDSDVFSWLNVPHCYDLSGNAEMPALFQ--QLVDAHRSDTLAARLREKSVM 149 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 +LSR + ++ M V Q I++ +H++ L +A L L P+ K Sbjct: 150 LDILSRVFEHQQPQIHADKMEDMGRLHKVQQYIKNHLHEEITLEQMAGTLHLHPNYFIKY 209 Query: 183 LKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 K + + ++ RM A L +I +++ + G+ S +YF F+ G +P Sbjct: 210 FKRHFGITPQKYLSLKRMEQAKLMLRTTSLSIKEIADATGFESANYFSKTFRKEVGYSPS 269 Query: 242 HYVSQ 246 Y + Sbjct: 270 EYRNN 274 >UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 Tax=Faecalibacterium prausnitzii RepID=C7H973_9FIRM Length = 271 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 89/250 (35%), Gaps = 16/250 (6%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 ++ C ++L + V G E + + ++ HI+ +++ Sbjct: 30 EEICRIILVSGGSFTLVRGGE-------SLLVNPGCVLLLGPGGGLLQQAGHIAPELLGC 82 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFR------VAAQHSMMPAETESEKERTR 119 L + + L P ++ M ESE E Sbjct: 83 RFPA--GVLPVLKNLMQRDFMPLFEPGAQTALYGPVQWSGRLRTLLGMMQSAESEPESPG 140 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 + T++ +++ + RN + + + ++ + ++L+ VA+ LSP L Sbjct: 141 MIYLTLILHYVEQECRSEKQDIRPRNETVEQICAYLAANYQQKFSLTDVAARFYLSPYYL 200 Query: 180 KKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 + + S I R+ A L NIS V++ G+ S ++F VF++ G Sbjct: 201 SRLFRRVTGQSIVDYINGRRIEAAQRLLESTDLNISAVAEQTGFASAAHFRRVFRETMGT 260 Query: 239 TPLHYVSQHR 248 PL Y HR Sbjct: 261 GPLQYRKSHR 270 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 112/259 (43%), Gaps = 11/259 (4%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI------IDVSSLNNTLV 55 D IV L+ + +NG I LK N ++ ++I ++ + Sbjct: 16 EFYVDHHLIVKLSNVQGDVHING-HAIELKNNSTFVVPKFSHISCSINQLNNQENIELQL 74 Query: 56 AHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK 115 I + I + ++++ L Q S +P+ T+P + ++P+ S Sbjct: 75 LMIDEESITEAFKYISA-LKQPTFPTASCSPVYTIPTPAIVDQNFVLFNKLLPSICGSSM 133 Query: 116 ERT---RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 E+T + L+F +++ ++ + ++ ++I D + W++ +A L Sbjct: 134 EKTLLSQCLVFILMALNEAGIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKAL 193 Query: 173 CLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVF 232 + S L++ L E S+SQ++ RM A+N L +ISQ+S G+ S +YF F Sbjct: 194 FTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSISQISNRSGFGSAAYFCDAF 253 Query: 233 KDFYGMTPLHYVSQHRERT 251 K YG+TP + + R+ Sbjct: 254 KRKYGITPSQFRTTSRQEN 272 >UniRef50_D1PIK0 Putative pectin acetylesterase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIK0_9FIRM Length = 615 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 92/256 (35%), Gaps = 18/256 (7%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLN---NTLVAH 57 +R + + E+ + L+ + + + L+ + Sbjct: 28 VRSHYHEFFEIYYLEQGRRQHIIEDSQYILQPDEFIIFPPFVMHHSFEENDVPFRRLLLY 87 Query: 58 ISHDIIK--DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK 115 + ++I+ LR L++ + + + PI + + + Sbjct: 88 FNPEVIRSPQILRTLSERARVYKLPRAQSAPI----------YNLMKDILQEQERDDLYS 137 Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 L+ L+ L + RN V+D + + +D L +A+ +S Sbjct: 138 RELITLMVNALALQL-VRNSDEAARPEQRNRVTD-IINYLHEHFTEDITLEQLANHFYVS 195 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 L ++ K +++ Q I R+ +A L +I+++S+ G+++ ++F V+K Sbjct: 196 QYHLCREFKRYTSSTIVQYIHNLRVLHAQRLLQESDYSITEISKRVGFSNVTHFNRVYKS 255 Query: 235 FYGMTPLHYVSQHRER 250 GM+P + +R Sbjct: 256 VTGMSPSQNKQAYLKR 271 >UniRef50_C4ZBG0 Transcriptional regulator, AraC family n=5 Tax=Clostridiales RepID=C4ZBG0_EUBR3 Length = 279 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 81/245 (33%), Gaps = 10/245 (4%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 D I + VNG +L L+ +I + + D Sbjct: 41 DHYLIHYIISGKGRYTVNG-SVHTLTPGDAFLVYPNTEVIYQADAQDPWEYTWVGFTGSD 99 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTV 125 L A P + ++ R L+T Sbjct: 100 AATILRATDF------TKAHPYIHSVSNGNEIKRQLMHIYDARGTEFENALEMTGRLYTT 153 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 L+ F+ + S N + I ++ + +AS + LS S L + +S Sbjct: 154 LALFVSAA--TSKPPQNSANSYVQKGIEYISANYSYPITVEDIASYIGLSRSHLFRSFQS 211 Query: 186 -ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 S + +T R++ A L +I+ ++ S G++++ YF F G++P Y Sbjct: 212 ILGVSPKEYLTDFRIKQACYLLKHSSLSITAIAGSIGFDNSLYFSKTFHKIKGLSPKEYR 271 Query: 245 SQHRE 249 S++++ Sbjct: 272 SKYKK 276 >UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM0_9FIRM Length = 248 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 89/246 (36%), Gaps = 9/246 (3%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 M D+ I+L+T ++ + + + + + + + + Sbjct: 1 MHQHEDRAEIILVTGGRGSFNIDTGHYL-ASPGDVLFFDSGILHDETTIDGDLATSCLGV 59 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 + R N+ + ++ Q S D R ++ A Sbjct: 60 SDFQLPGRRANEMVGRLYAPQLSLDA-------QFDAVRTLFHTAVQLALAGDAPCVLDQ 112 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 L +L + + + + +V I++ + L +A+ L +P L Sbjct: 113 LTCAILCKLDEELARHGQPPRPQQESLGLTVKAYIDAHYRESITLQSIAAELNFNPYYLA 172 Query: 181 KKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 + S Q I R+ A N L+ ++I++++ SCGYN+++YF SVFK GMT Sbjct: 173 HAFREHIGYSPMQYIIRRRIGEAQNLLIGTDRSITEIAFSCGYNNSNYFQSVFKRLVGMT 232 Query: 240 PLHYVS 245 P Y Sbjct: 233 PGQYRR 238 >UniRef50_A6BIB0 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIB0_9FIRM Length = 285 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 93/250 (37%), Gaps = 9/250 (3%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLN-CENNIIDVSSLNNTLV-AHISHDIIKD 65 I+ V I + E ++L+ N + + + E + I S + H+ + Sbjct: 37 MEILFCLNGSVRIHIE-HEHLTLQRNQLIVFDSKEVHSIHSDSKLYMFLCIHVDKKQLSV 95 Query: 66 Y---LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 Y L + + + +TP + L L D+ R ++ A L Sbjct: 96 YCPDLELYHIKCRPVSLDDSKSTPYIHLCQLAHDLTRTNVENKNTSAMRSDGTALLM--L 153 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 ++ F + N + + + + +L VA+ + S + Sbjct: 154 ADLIRYFSVYSLPGTTTGTGQSNDILRKIISYVNEHYTEKLSLEEVANQVGFSREYFCRF 213 Query: 183 LKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 K ++ + + R+ +A LM K+IS+V Q G+ + + F +FK+ YGMTP Sbjct: 214 FKQHMGITFLRYLNEVRISHAGRILMNTDKSISEVMQESGFTNQTIFNRLFKEIYGMTPR 273 Query: 242 HYVSQHRERT 251 + + E T Sbjct: 274 QARNSYAENT 283 >UniRef50_C6LLK3 Putative two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLK3_9FIRM Length = 531 Score = 157 bits (397), Expect = 4e-37, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 1/141 (0%) Query: 108 PAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSM 167 +T E + L + + + + + + ++ + ++ +L Sbjct: 389 YLDTVMALEDYEDIRTWFLEKMMQTCCSIRDKNEDRSESLVEKARSYMQENYSREISLDD 448 Query: 168 VASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTS 226 V+ + +SP K K E ++++ +T R+ A L +I ++ GY + Sbjct: 449 VSKEVNVSPYYFSKIFKEESGENFTEYLTNIRIGKAKELLENPELSIKEIGVMSGYTDPN 508 Query: 227 YFISVFKDFYGMTPLHYVSQH 247 YF +FK G+TP Y ++ Sbjct: 509 YFSRIFKKHTGITPREYRERY 529 >UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C353D2 Length = 286 Score = 156 bits (396), Expect = 4e-37, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 84/246 (34%), Gaps = 7/246 (2%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 ++ ++ + + +N ++ + + + + + + + + + Sbjct: 38 HEELELIHIISGTFHVTINETTRNAVPGDILLVNSGGLH--GGTPYDCVYECLVFPVSLL 95 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 + ++ L+++ T + ++M E K + LL+ Sbjct: 96 SSQTYASEFLNRLDRQDLILDEYFPAGDDTAIHSLLERLFALMQDSDEGGKLQCLGLLYQ 155 Query: 125 VLSRFLDSKKFV----SLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 + L +++ S + + +V IE+ + L +A +S Sbjct: 156 FMGLLLQDRRYTASDKSDLSTHRNIYLLKNVLNYIEAHYTEKITLHELARTAGMSSKYFC 215 Query: 181 KKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 + + R+ A L G +I+ ++ CG+N SYF FK + G++ Sbjct: 216 HFFSEMTGRTPIDYVNYYRVERACCLLAGIGHSITDIAMLCGFNDVSYFTRAFKKYKGIS 275 Query: 240 PLHYVS 245 P Y+ Sbjct: 276 PGQYLK 281 >UniRef50_C1PBK0 Transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBK0_BACCO Length = 768 Score = 156 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 95/242 (39%), Gaps = 3/242 (1%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLV-AHISHDIIKDYL 67 ++L+ + ++ + VN + L NH+ L+N + + N ++ I ++I+ Y Sbjct: 27 ELLLVIKGELEVTVN-QHACHLSENHLLLINANDIRSMKGNKENVVLSLQIPLEMIEAYY 85 Query: 68 RFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLS 127 +++ + + + ++ H +E E + +L Sbjct: 86 PAIHECRFDCDSSNEDNGMYMFFDQIRQLMAKIFIAHYQQKEGSEIEIYSMIFQIVLILI 145 Query: 128 RFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE- 186 R + + + + I + K L+ +A+ LS L + K + Sbjct: 146 RNFKTTYLGRHAHSRINDERMKEILAYIGKNYRKPITLAEIANRHYLSLYYLSRYFKEQV 205 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 S+SQ I R++ AV EL+ I+++S + G+ + F FK+ Y TP Y Sbjct: 206 GESFSQYIKQLRLKSAVRELVYTDHPITRISLNNGFPNVKAFNKAFKEKYRQTPSEYRRL 265 Query: 247 HR 248 H+ Sbjct: 266 HQ 267 >UniRef50_B5CXD1 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CXD1_9BACE Length = 293 Score = 156 bits (395), Expect = 6e-37, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 70/245 (28%), Gaps = 8/245 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 S Q ++ E + W + GK ++K N ++ + +S ++ + H Sbjct: 55 SPQHILIYCHEGEGWYNI-GKGKCTVKKNDFFIIEAGTPHVYAASTSHPWSIYWIH---- 109 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 L + + + E L Sbjct: 110 --FTGEQSHLFSELFNRTIYIDDSPTARFNDRIQLFNEILVNLEMGYSIENLEYITLCLW 167 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL- 183 L + V +++++ K L +A + SP+ L Sbjct: 168 YLLGSFRYIPQFREINKPKTQDTIQKVINYMKANLDKQLTLEDMAESVNYSPTYLSTLFT 227 Query: 184 KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + S +++ A L K +++ ++ YF VF + M+P Y Sbjct: 228 QKSGMSPINYFNQLKIQKACQLLDFTDKKAKEIAFELAFSDPYYFSKVFTKYMHMSPKEY 287 Query: 244 VSQHR 248 + + Sbjct: 288 RMKKK 292 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 156 bits (395), Expect = 6e-37, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 12/260 (4%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI------IDVSSLNNTLV 55 D IV L D + +NG+ +++ +N ++ ++I D + Sbjct: 45 EFYVDHHLIVNLKNGDGDVCINGQS-VTISSNATLVIPKFSHISCTINQKDCHKNIELQL 103 Query: 56 AHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTL---PCLTPDVFRVAAQHSMMPAETE 112 + + I +++ L Q + P+ L P + F++ Q A+T Sbjct: 104 LMVGEETIAQSFKYMAS-LKQPNTPTANCMPVYHLNETPDVVEQNFQLFQQSLPAVADTR 162 Query: 113 SEKERT-RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASC 171 EK ++L F +L+ ++ + ++ ++I D + W++ +A Sbjct: 163 LEKTFLTQSLFFILLALNEAGIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKA 222 Query: 172 LCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 L + S L++ L E S+SQ++ RM A+N L +ISQ+ G+ S +YF Sbjct: 223 LFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSISQIGHRSGFGSAAYFCDA 282 Query: 232 FKDFYGMTPLHYVSQHRERT 251 FK YG+TP + + RE Sbjct: 283 FKRKYGITPSQFRATSREHN 302 >UniRef50_A4XJ70 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ70_CALS8 Length = 286 Score = 156 bits (395), Expect = 6e-37, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 86/250 (34%), Gaps = 13/250 (5%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 D+ IV L + RV+GKE + + + S ++ Sbjct: 39 HDEFEIVYLEKGTASFRVDGKEYFLGPKQFLFVNCGSIHGGKAEDNPEPYAIVFSLSML- 97 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL--- 121 F + +S + L + + S + + + + L Sbjct: 98 ----FSEGPDICKSKYLQSVSERKLLVQNSFEDEHTRELISNIITVWKEKPKGYELLVKG 153 Query: 122 -LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVY---QIIESDIHKDWNLSMVASCLCLSPS 177 LF + + + + + + + I S+ D ++ ++A LS Sbjct: 154 YLFVIFYYLFNKRYVTASSTDRELDLKLEKIKSALDFINSNYSSDIDIDLLAKLANLSKF 213 Query: 178 LLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 + K + + I R+ A+ + +IS+++ G+N+ SYFI VFK++ Sbjct: 214 YFCRLFKEITHLTPVDYINKFRVEKAIELIKNTNLSISEIAFEVGFNNVSYFIKVFKEYV 273 Query: 237 GMTPLHYVSQ 246 G+TP Y Sbjct: 274 GVTPFKYKKN 283 >UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ3_ALKMQ Length = 282 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 95/251 (37%), Gaps = 8/251 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN--NIIDVSSLNNTLVAHISHDI 62 DQ I L + + + +K+ + L+N ++ D + ++ V Sbjct: 34 HDQYEIYYLLSGERHYFIKDR-IFHVKSGTLVLINRQDVHRTTDADTQDHVRVLLNFSKD 92 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 ++ L + + P L+ +V H + T + +ALL Sbjct: 93 YLLSSPYVIALLDGLFMNNNYVIPFLSAEQQYVEVLLDKMIHEIEHQSTGF-QVALQALL 151 Query: 123 FTVL---SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 +L SR+++S + L + + Q I ++ LS VA +S L Sbjct: 152 MDLLVYTSRYIESNRHDVLAPPSQVHEKISQIVQYINTNYQTPLTLSSVAQNFFVSQYYL 211 Query: 180 KKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 + K ++ + I R+R A L + +S++ G+ S S+F VFK+ Sbjct: 212 SRTFKQATGFTFVEYINNIRIREAQRLLRETNHKVIDISEAVGFGSISHFGRVFKEVTRF 271 Query: 239 TPLHYVSQHRE 249 +PL+Y + E Sbjct: 272 SPLNYRRLNTE 282 >UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRD3_9CLOT Length = 277 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 7/242 (2%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 S C +L + + L + ++N + S L I Sbjct: 38 HSHDFCEILYVAGGAGEAILEGKKFRLAPGDLVVVNPGTLHEERSDAKAPL-----RLIF 92 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 F L + Q + + ++ E +E ++ L+ Sbjct: 93 LAIRDFAVPGLPAGCLSQEKYRVLSCGEYRYKMDIYLRELLQETSSQIEFYQEISQGLVS 152 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 +L + + L + + ++ + L ++ + +S L Sbjct: 153 ALLVLVMRLIRINPEDEAALSQE-CQKIKEYLDQNFTSPITLDSLSETVYISKHYLSHLF 211 Query: 184 K-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K S + +T+ RM A L +S+VS++ GY + YF VFK YG++P+ Sbjct: 212 KEQTGVSPIKYLTSKRMEKACELLSETELPVSEVSKAVGYENPLYFSQVFKRIYGISPVK 271 Query: 243 YV 244 Y Sbjct: 272 YR 273 >UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clostridium RepID=A0Q2M6_CLONN Length = 246 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 1/154 (0%) Query: 96 DVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQII 155 D F+ + + + K + +L+ F+ K V + I Sbjct: 92 DDFKFVQKALRIKVDDYLLKPIRPQKIVDILNEFIKDNKKRIEESNKNCTEEFQEVVEYI 151 Query: 156 ESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNIS 214 + + D L VA + S S L K K E ++++ IT R+ A L+ +I+ Sbjct: 152 DKNFKNDITLKDVADHVNFSSSYLSKLFKKEMGINFNRYITKIRIDKAKEILINSNISIN 211 Query: 215 QVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 +++ S GYN +YF VFK MTP Y + R Sbjct: 212 EIAFSVGYNEPNYFCKVFKKIVNMTPSEYRTNSR 245 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 110/248 (44%), Gaps = 15/248 (6%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C V+L + + GKE + L+ L++ + ++ +VA + I YL+ Sbjct: 8 CSVILILESFDVYF-GKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISRYLK 66 Query: 69 FLN----KDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 N D + P + + +L A++ + ++ FT Sbjct: 67 ANNLRDISDCREYPSYLKINFADFSLIKGLISWANHCAEYIEI---------FDESIAFT 117 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 LS F K+F + + V II +D+ W L ++S L LS SLLK+KLK Sbjct: 118 CLSAFSSEKQFGVFL-FECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLK 176 Query: 185 SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 E S+S+II RM+ A L IS+V++ CGY S SYF VF+ ++G++P Y Sbjct: 177 EEGVSFSKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYS 236 Query: 245 SQHRERTV 252 + E + Sbjct: 237 QRSSESKI 244 >UniRef50_Q2RGN4 Two component transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RGN4_MOOTA Length = 548 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 +L R + V+ + + D + IE++ +D L VA + LSP K K Sbjct: 416 ILERLMALVAQVAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLSPCYFSKLFK 475 Query: 185 SE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 ++ +T R++ A L+ +++++ GY YF VFK G TP + Sbjct: 476 QFKGLNFIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKKQEGYTPSVF 535 Query: 244 VS 245 Sbjct: 536 RK 537 >UniRef50_C6IWJ9 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWJ9_9BACL Length = 284 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 80/245 (32%), Gaps = 9/245 (3%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRF 69 I + ++V G E L L E I + + + Sbjct: 45 IHFIHSGRGIVKVEG-ETFELTGGQAFLAYPERVIFYQADEVDPWTYSWIGFNGEQVAEI 103 Query: 70 LNKDLSQIPVWQRSATPILTL-PCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 L++ A+P+L + L P ++ + + + + T+L Sbjct: 104 LSRTR------LTPASPVLPMDTHLMPQLYELLNEAEESNTTRDLRLQTLLYEFMTLLVE 157 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SEN 187 + + ++ + S ++ ++ +A+ + L L K + Sbjct: 158 LVPASGDADSTRTQAKDAYIHRCLDFLHSHYSEEMSVGQLAAIVGLDRKYLSSLFKRATG 217 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 Q + RM A L +I++V++S GY F +FK G +P Y Q Sbjct: 218 MPPQQYLLKYRMEKACALLRNGHYSIAEVARSVGYQDALLFSKMFKKTVGTSPSDYREQW 277 Query: 248 RERTV 252 ++ + Sbjct: 278 QKSDI 282 >UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTF5_PAESJ Length = 294 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 97/257 (37%), Gaps = 10/257 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDV--SSLNNTLVAHISHDI 62 D+ ++L+TE RV+ ++ + + + E + V + + Sbjct: 38 HDELELLLVTEGTAVFRVDLQDYELQAGEAIFVNSGELHSGYVVGGKPCSFDAVVFHSSL 97 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTL---PCLTPDVFRVAAQHSMMPAETESEKE-RT 118 D PV ++ L P ++ + Q + ++ E Sbjct: 98 FSSGSIDYLFDRYISPVLEKRYEVPAHLRREPGPGMELLAMLDQIFEVHRNEQAASELTI 157 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDS---VYQIIESDIHKDWNLSMVASCLCLS 175 + LLF++L++ + K + + V + IE + + L +A +S Sbjct: 158 KGLLFSILAKLVSLGKPSVRVKPEQEGYRIERLKTVIEYIEQNYAEPIPLQKLAELARMS 217 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 S + K S + + + R++ A + L I +V+ G+NS SYF +VF+ Sbjct: 218 ESYFCRFFKRITTKSPIEYMNSYRVQQAASRLRQTDAKIMEVALDVGFNSLSYFNTVFRQ 277 Query: 235 FYGMTPLHYVSQHRERT 251 +G TP Y S+ + + Sbjct: 278 RFGCTPREYRSRLQVNS 294 >UniRef50_UPI0001788255 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788255 Length = 292 Score = 153 bits (387), Expect = 5e-36, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 87/252 (34%), Gaps = 11/252 (4%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNN---TLVAHISHD 61 + I + E +V ++ E I ++A ++ + + N Sbjct: 41 HKEAEIFYVMEGEVLFQI-DSEYIPVRAGEAIFIDGGDLHTGHAQGNEGCSFCAMVFDVG 99 Query: 62 II-KDYLRFLNKDLSQIPVWQRSATPIL----TLPCLTPDVFRVAAQHSMMPAETESE-K 115 ++ + + + +R+A P T L + + PA E+ K Sbjct: 100 MLASSSYDLVQEGMIVPFQERRAAFPRRMTSGTDERLLEHIKEMMLLSKHKPAGYEAAIK 159 Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 +LF S + + S M R V I+S H+ LS +A + +S Sbjct: 160 GHLFLMLFQAASSGRLANRSRSEAADMTRTERLKKVILYIQSHYHRPIRLSELADLIPMS 219 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 + KS + + + R+R A L IS ++ G+ SYF+ VF+ Sbjct: 220 EGQFCRFFKSMTGQTPVDYMNSYRVRQAAELLRSPDNKISDIALDVGFGHISYFVRVFRK 279 Query: 235 FYGMTPLHYVSQ 246 TP Y + Sbjct: 280 IMNCTPSEYRKK 291 >UniRef50_UPI0001788A43 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788A43 Length = 516 Score = 153 bits (387), Expect = 5e-36, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 1/135 (0%) Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 E + L+ + + L + + I++ + +L VA + +S Sbjct: 382 EEVKKLVLQGFHALREEAMRHPVPESTLHERIVLQAVRYIKARFTEPISLQEVADEVAVS 441 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 + + K ++ + R++ A L + +V+ G+N YF +FK Sbjct: 442 RNYFSELFKRVTGHNFIDYVIDLRLKRAKELLSTTSLRVYEVADRSGFNDVKYFSKLFKK 501 Query: 235 FYGMTPLHYVSQHRE 249 GMTP Y QHR+ Sbjct: 502 MVGMTPAEYQGQHRK 516 >UniRef50_Q03FA9 Transcriptional regulator, AraC family n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03FA9_PEDPA Length = 298 Score = 153 bits (386), Expect = 6e-36, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 89/249 (35%), Gaps = 8/249 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSS--LNNTLVAHISHDI 62 +++ ++ T ++ +E + + + L + + + AH + D Sbjct: 54 TEEWILIFCTHGKGVVKSATEEWLIESGSIVLLPPGKEHTYYAFDDDPWDIFWAHFNGDS 113 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 + +Y+ + V +++T + + + + A + + + Sbjct: 114 VNEYIPQEALQGNGFLVINKTSTEDM-----QMLMSQFWQMIQALSAGFSYQSVFYSSQV 168 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 ++ + + Y + N + I + +LS + L +S S L + Sbjct: 169 LGATLAYVSLQSVLPHDSYTMGNEYITKAVKYIYDHFEEKVSLSTLTEVLDVSKSYLSRI 228 Query: 183 LKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 + TS +Q I +M+ A L + Q++ GY+ YF +FK G +P Sbjct: 229 FRQTVGTSVNQFILDIKMKQACYYLKDTNLAVHQIASRLGYDDPYYFSRIFKKVVGSSPR 288 Query: 242 HYVSQHRER 250 + Q + R Sbjct: 289 VFRKQEKNR 297 >UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SGH8_9FIRM Length = 288 Score = 153 bits (386), Expect = 7e-36, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 92/242 (38%), Gaps = 9/242 (3%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 + + + G+ +K + M ++N + ++S + L + ++L Sbjct: 43 ELFYCLSGEGQFYLAGQ-LFPVKPDDMVIVNPQVEHTELSLNASPLEYIVLGVASMEFLF 101 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 I + + ++TL + + A+ E+ + +L L R Sbjct: 102 SKADTNYAIFNCRENRERMVTL------LHMLLAEADRSLDGCETVCQDLLEVLLIWLVR 155 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-N 187 + N + + ++++ +D +L ++A L+ L + E Sbjct: 156 -CTTISLQLEEAAPTENRECAEIKRYLDTNYREDISLDLLAELAHLNKYYLAHTFQREYG 214 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 S + R+ + + L G +++Q+S+ G++S SYF F+ GMTP Y Q Sbjct: 215 ISPITYLNRRRIEESKHMLGNTGYSLAQISELMGFSSPSYFSQCFRKAEGMTPNEYRRQT 274 Query: 248 RE 249 R+ Sbjct: 275 RQ 276 >UniRef50_C0Z8E4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z8E4_BREBN Length = 548 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 89/246 (36%), Gaps = 10/246 (4%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYL 67 ++++T+ + + L + + L I + + D ++ Sbjct: 37 HAVLIVTKGSGRMLSESDQAALLDGSALVLSRESARQISADTDDPLRFLVFYFDALQQQD 96 Query: 68 RFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQH--SMMPAETESEKERTRALLFTV 125 + N + ++ + + ++ H + P E + R + LL + Sbjct: 97 QVSNDYSPSLSWHLDHSSCVFHQVDNSTELALTLYAHRQANDPLEAFQNQIRFQQLLHLI 156 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 S + + V D + ++ + L +A+ L+P + K Sbjct: 157 WSHAERQA-------TVETSSVVDQTISYMHTNYAEPITLDDLANRAGLTPRYYTEVFKK 209 Query: 186 E-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + S + +T+CRM +A L K + +V++ GY YF FK G++P +V Sbjct: 210 KVGKSPIEYLTSCRMEHAKTLLRESNKRLREVARLVGYADEFYFSRRFKQQVGVSPTVFV 269 Query: 245 SQHRER 250 ++++ Sbjct: 270 RMNQKQ 275 >UniRef50_C5D8H7 Two component transcriptional regulator, AraC family n=3 Tax=Geobacillus RepID=C5D8H7_GEOSW Length = 515 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 65/211 (30%), Gaps = 11/211 (5%) Query: 45 IDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQH 104 ID + L + K L + +I P + + F + + Sbjct: 306 IDQTEREKRLFDVVREGDFKQALTQCLSYIEEIAF----HHPFPIVKQKMEETFILLGRM 361 Query: 105 SMMPAETESEKE------RTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESD 158 + L T + ++ + N I+ Sbjct: 362 LTDFGISYERTTTFHSCGSLEELKRTATEQLQHMVHYIQAWRHQQANGKIGKAKDYIDEH 421 Query: 159 IHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVS 217 H L VA + +SP K K ++ +T R+ A E+ K++ ++ Sbjct: 422 YHHPLTLEEVAEYVGISPYYFSKLFKDRFGMTFIDYVTEVRIARAKKEMADPNKSLKEIC 481 Query: 218 QSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 GYN +YF VFK GM+P Y + Sbjct: 482 FLVGYNDPNYFSRVFKKHTGMSPTEYRKKLH 512 >UniRef50_C5CTH9 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CTH9_VARPS Length = 313 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 90/259 (34%), Gaps = 18/259 (6%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHM-ALLNCENNIIDVSSLNNTLVAHISHDIIK 64 + + ++ +V G A H+ +L +++ + + + Sbjct: 27 HEYFQIQVSIHGGSQQVVGGAVRPFTAGHLSFVLPYRVHVVPHPPGARYAIVNFDQGFLW 86 Query: 65 DYLRFLNKDLSQIPVWQR------SATPILTLPCLTPDVFRVAAQHSMMPAETESEKE-- 116 L DL ++P ++ + D R+ + A + Sbjct: 87 PELAVEALDLEEVPAARQPELAPFLFQEYMDFHFGDADFARILGWLDELAALNRERRFGA 146 Query: 117 --RTRALLFTVLSRFLDSKKFVSLMM------YMLRNCVSDSVYQIIESDIHKDWNLSMV 168 R +L +++ + L + V + + + ++ +L+ Sbjct: 147 VGAIRGILLQLMALACHRHEAPLLAQAALQSGRSAGHDALQRVMRYVREHLAEEMSLNDA 206 Query: 169 ASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 A+ LSP+ L LK ++++++T R+ A L+ I +++ CG+ Y Sbjct: 207 AAAAMLSPNYLAHLLKKQTQRTFTELVTERRLERAKELLVTSNARIGDIARQCGFGDAVY 266 Query: 228 FISVFKDFYGMTPLHYVSQ 246 F F+ G+TP + SQ Sbjct: 267 FSRRFRLQSGVTPRQFRSQ 285 >UniRef50_C4ZAF9 2-isopropylmalate synthase n=2 Tax=Eubacterium RepID=C4ZAF9_EUBR3 Length = 292 Score = 152 bits (385), Expect = 9e-36, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 94/254 (37%), Gaps = 16/254 (6%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 D+ I+ + + + + ++G+ I + + +++ + + + + Sbjct: 37 HDELEIIYVKQGKLHVTISGENYIGSPKDAFVVSPGSLHLMGSPTGD---ADYYTFLFPL 93 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 +Y+ F DL + + L + D + + E S K + Sbjct: 94 EYISFQTDDLMEKSILSPLKRGRLMISPQINDTAADICERLIEINEQISGKNAEKTDAAN 153 Query: 125 VLSRFLDSKKFVSLMMYMLRN------------CVSDSVYQIIESDIHKDWNLSMVASCL 172 + ++F + + M RN + I + ++ +L + Sbjct: 154 IEAQFETKITLIKFIRKMWRNGLILENGTNGTNTTEKEMITYIRQNYTREISLKEFGAQF 213 Query: 173 CLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 LS + + K + + SQ + R+ +A L ++++V+ GY + SYFI Sbjct: 214 HLSEKYISRYFKEHFHITLSQYVNHLRLEHARQLLEESTASVTEVAMCSGYQNVSYFIRS 273 Query: 232 FKDFYGMTPLHYVS 245 FK YG++PL Y + Sbjct: 274 FKKMYGVSPLKYRN 287 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 +S L + V ++ N + + Q +E H + +L +A LS + + Sbjct: 410 WREQISGRLYAASRVLTQIHSKDNHIIHDIAQYLEQHYHDEISLQQIAGKFFLSREYISR 469 Query: 182 KLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K K E + S + R+ A L+ I+Q+++ GY YF VFK G TP Sbjct: 470 KFKQEFGVTLSDFLGRIRIEKAKTLLLNPQIRIAQIAEMVGYQDEKYFSKVFKKMEGFTP 529 Query: 241 LHYVSQH 247 Y +H Sbjct: 530 NEYRKKH 536 >UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7VID9_9CLOT Length = 289 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 97/252 (38%), Gaps = 13/252 (5%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 D+ I+ + + + ++G+ I + + + + + V + + Sbjct: 37 HDEFEIIYVKSGFLTVNISGENYIGKPGDAFVVSPGNLHFMGSKTGT---VDYFTFLFPL 93 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTL-PCLTPDVFRVAAQHSMMPAETESEKE------- 116 Y+ F D+ + + + L + P + + + Q + +SE+E Sbjct: 94 KYISFYTDDILDDRLLEPLDSGRLMISPSVKDTIKELCEQLIEIYEAKKSERELNITTQI 153 Query: 117 RTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSP 176 +T+ +L + + K F+ RN V + I+ + +L LS Sbjct: 154 KTKIILLQFILEMWE-KGFIVENNTSGRNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSE 212 Query: 177 SLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDF 235 + + K + + SQ + R+ YA L ++++ + GY + SYFI FK Sbjct: 213 KYISRYFKEHFHITLSQYVAYLRLEYAKQLLQDTDISVTEAAMRSGYQNISYFIRSFKKT 272 Query: 236 YGMTPLHYVSQH 247 YG++PL Y + Sbjct: 273 YGVSPLKYRKKQ 284 >UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LA91_9FIRM Length = 288 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 83/244 (34%), Gaps = 6/244 (2%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDY 66 + ++ LT + ++ E + + + + + + + N + + I Sbjct: 46 EHGVLNLTVRGRSFTLHPGEFCFINSGELHEIKSGGPSLHHAIVFNPDILDFTLYDICQ- 104 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 + ++ + + + + +F + + + + +L Sbjct: 105 -HSFIRPVTSGNLIFPTLPSVFSPEESQMILFHMQEIIRLYHTLPSCASLSIKIHILQIL 163 Query: 127 SRFLDSKKFVSLMMYMLRNCVS---DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 F + F+ + V + I + +L +A +SP+ Sbjct: 164 ELFFQADCFLENTISSKEKDSQNKLKKVIEYIHENYAGPISLPDLAKICFMSPNYFCHYF 223 Query: 184 KSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K E I R++ A L +SQV+ S G+++ SYFI F+++ +TP Sbjct: 224 KQEIGKPPIAFINEYRIQKACQILTDSELPVSQVAISVGFDNFSYFIRKFREYKNVTPTE 283 Query: 243 YVSQ 246 Y S Sbjct: 284 YRSH 287 >UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY53_9BACL Length = 545 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 79/196 (40%), Gaps = 3/196 (1%) Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 ++ +Y +++ + I + Q + ++ +AA H + + Sbjct: 347 RRLLDEYQARVDRSV-DITISQVHRELAIIREAAVSEMRGIAAAHPPLYDAAAITEVTDP 405 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNC-VSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 A L +L+ + D+ + + + + +++ +D +L VA+ L PS Sbjct: 406 AELRRLLAGWADAAEEYGADRRETDSSQLIWHIVDYLDAHYFEDISLIDVATRFHLDPSY 465 Query: 179 LKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 L K KS + ++ + +T R+ A L + IS++S+ GY + YF VFK G Sbjct: 466 LSKLFKSVTSENFIEYVTRKRIEKACELLRSSERKISEISELIGYENQRYFSQVFKKSTG 525 Query: 238 MTPLHYVSQHRERTVA 253 TP Y + Sbjct: 526 QTPSEYREAQQSGKAG 541 >UniRef50_C9LA22 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C9LA22_RUMHA Length = 277 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 92/254 (36%), Gaps = 18/254 (7%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 M + +T+ + ++ GK+ I ++ N + L+N + + Sbjct: 35 MEHSHYFSELFFVTKGTGYFQIEGKQ-IPVQKNDLILINPNIPHTEFGNKEQPWE----- 88 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 L + Q ++ A ++ L+ + + S + E ++++E + Sbjct: 89 ------YIALGIEGVQFQYSEKEAPYSYSVFSLSREHREIPWYLSTLVKEIQTQQEGYQT 142 Query: 121 LLFTVLSRFL-----DSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 + +L L +++ V Q I H+D L +++ + ++ Sbjct: 143 ICQNLLELILLSVARSTRQEFLSAPRQKTTRECRLVEQYINEHYHEDITLDTLSALVHIN 202 Query: 176 PSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 L K+ S + R+ A L +++++ + G++S SYF F+ Sbjct: 203 KYYLVHAFKNYKGVSPINYLIQRRVEEARYLLESTNYSVTKIGEISGFSSQSYFSQTFRR 262 Query: 235 FYGMTPLHYVSQHR 248 G TP Y + + Sbjct: 263 LTGTTPNAYRKKKK 276 >UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2F1F Length = 288 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 12/248 (4%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 D+ I+ + + I ++ E + ++N + N+ + + Sbjct: 37 HDELEIIYIRNGSINITIDN-ELFTGTGGSFFIVNPGE--LHYMGSNDLNADYYTILFPL 93 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERT------ 118 +++ F + D + +++ + + L P A S++ K Sbjct: 94 EFISFQSNDYVENMLFKPMRSSHVILTHSLPYSEIYAEIISLLEKLIYINKYEKGFYQLD 153 Query: 119 -RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 + LL +LS L S + + + + + + + + LS +A +S Sbjct: 154 CKILLLEILSNIL-SIPDILVKKTSNASDMRREIITYVNDNYLEKITLSDLADEFHMSEK 212 Query: 178 LLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 + + K N ++S+ + R+ YA N L +I+ V+ S G+ + SYFI FK+ Y Sbjct: 213 YISRYFKKHFNITFSKYVNHMRLLYAKNLLDTTNISITDVALSSGFPNVSYFIRSFKESY 272 Query: 237 GMTPLHYV 244 G TP Y Sbjct: 273 GKTPFSYR 280 >UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C356F7 Length = 268 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 83/245 (33%), Gaps = 6/245 (2%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENN--IIDVSSLNNTLVAHISHDIIK 64 L I +N + + L E + S +N + + + Sbjct: 24 HYEFYYLYSGHCKIFINHTLYYVEPGDIIFLKPGEIHRTTYHSSPVNERVTISFDGEYLD 83 Query: 65 DYLRFL-NKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 +++ I + P + + R+ + + + K+ L Sbjct: 84 SMKELCGEENVEYIFRNSKVTVPNGNRSRVEELIRRIEYEETGQDGFSPLMKKGCFYELL 143 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 LSR +++ + + ++ + I L VA +SP+ +K Sbjct: 144 VSLSRCQEAETDHGRL--EIGEETIEAAAKYIYDHYQNPITLEEVAELSHMSPAYFSRKF 201 Query: 184 KS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K+ Y + +T R+R A L+ ++++++ CG+ +YF F+ G++P Sbjct: 202 KAVTGFGYKEYLTNIRIREASRLLLHSACSVTEIADRCGFGDGNYFGDAFRKAKGVSPRA 261 Query: 243 YVSQH 247 + Sbjct: 262 FRKMQ 266 >UniRef50_A8MEF5 Transcriptional regulator, AraC family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MEF5_ALKOO Length = 854 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 99/248 (39%), Gaps = 6/248 (2%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLN-CENNIIDVSSLNNTLV-AHISHDIIKDY 66 I+L+ + +V + V G LK N + L+N E I +N L+ I + Y Sbjct: 35 EILLVLQGNVSLGV-GDHKYLLKENDLILINYNEIYSITRGKEDNLLLSLQIDPVTLSQY 93 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 ++ + + + + +V ++S + LL L Sbjct: 94 DPNFSRLVFDCKSFMYCKDNQEKFDVVRYYMAKVVWEYSKKKPGYQLRIASNIHLLAAHL 153 Query: 127 SRFLDSKKFVSLMMYMLRNCVS--DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 L ++ L + ++ + I +I K +L +A +S L + +K Sbjct: 154 VNNLTNENLNQLKSEIKDKDLARLKRILSYINENIDKKISLKTIAKNEHISYFYLSRFIK 213 Query: 185 SE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 ++ + I T R+ AVN L+ K I++VS G+ + F +FK+ +G +PL Y Sbjct: 214 DNLGVTFQEYINTLRLDKAVNLLLSSNKTITEVSYESGFANIKLFNKLFKETFGASPLQY 273 Query: 244 VSQHRERT 251 H+E + Sbjct: 274 KKIHKESS 281 >UniRef50_C5RE27 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RE27_CLOCL Length = 820 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 101/254 (39%), Gaps = 9/254 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNN--TLVAHISHDI 62 D+ IV + E + + ++ + L+ MA++ + S N + I++ Sbjct: 29 HDEIEIVKVLEGKIKVSIS-ESVCFLEKGEMAIIKHKEIHQIQSLENESLLQIIQINYKF 87 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 ++ + L++ + + S L + + + + + E A+ Sbjct: 88 METHFPHLSRISFENNLLNISKDINLNVASNLKQLINEMINYLSVRNQGY-EFHVISAIY 146 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCV----SDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 S + +S + +N + + + IE + + N++ +A L L+ Sbjct: 147 KVFGSIISNVPYTISTEDELEKNNITFNRMKKIIEYIEQNYMNEININTLAEILHLNKYY 206 Query: 179 LKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 + K S Q IT RM A L+ + +I+ + SCG+ + YF VF++ Y Sbjct: 207 IAHFFKKHTGLSLGQYITNLRMNKATELLIKNEDSITNIILSCGFKNIKYFYKVFREVYK 266 Query: 238 MTPLHYVSQHRERT 251 +PL Y + +ER+ Sbjct: 267 CSPLEYKNNRQERS 280 >UniRef50_A8RIS8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIS8_9CLOT Length = 285 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 38/257 (14%), Positives = 87/257 (33%), Gaps = 19/257 (7%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDV---SSLNNTLVAHISHD 61 ++ I L E + + + + + ++ + ++ + + Sbjct: 32 HNEYEIYYLLEGQRYYFI-DRRTYHVTGGSLVFIDRNQIHQTSQAGPGSHERILISLDQN 90 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 D+L F + + + S L + + + +K R + Sbjct: 91 PFSDFLAFTGEMSLEGFFRRNSGILNLDKEGQNLAEYLLDGAAKELH----EKKPGFRHI 146 Query: 122 LFTVLSRFLDSKKFVSL----------MMYMLRNCVSDSVYQIIESDIHKDWNLSMVASC 171 + LS+ + + ++ D V I K +L ++A+ Sbjct: 147 TMSKLSQLFILAQRHMSGPSSLSADLPLSTQPKHRKVDEVASYIIDHYDKALSLEIIAAH 206 Query: 172 LCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFIS 230 ++ L + K + ++ I R+R A L +I++VS+S GY + +YF Sbjct: 207 FYVNKCYLSRIFKEASGFTVNEYINMIRIRRARELLSNTSMSITEVSESVGYETITYFER 266 Query: 231 VFKDFYGMTPLHYVSQH 247 VF + +P Y Q+ Sbjct: 267 VFHQYTQTSPSGYRKQY 283 >UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG61_9FIRM Length = 533 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 2/125 (1%) Query: 125 VLSRFLDSKKFVSLMMYMLRNCVS-DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 L L V + + Q I+ L V++ + S S Sbjct: 408 CLRGMLSEAMQVLSEQKRQADTRPIRTAKQYIQEHYADPLTLEWVSNIVGFSGSYFSSLF 467 Query: 184 KSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K E ++ + ++ RM A L ++++V GY+ YF FK G+ P Sbjct: 468 KKETGQNFLEYLSEVRMNRAKELLRETNLSVAEVCVRVGYSDLKYFTKSFKKATGLKPGE 527 Query: 243 YVSQH 247 + + Sbjct: 528 FRKLY 532 >UniRef50_C7G755 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G755_9FIRM Length = 302 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 93/250 (37%), Gaps = 11/250 (4%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 D+ I+ + + + ++G+ I + + +++ + V + + Sbjct: 50 HDEFEIIYVKSGLLTVSISGESYIGKAGDAFVVSPGNLHLMGSQTGT---VDYFTFLFPL 106 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR----- 119 Y+ F D+ + + + L + D + + + E+++ ++ Sbjct: 107 KYISFRTDDMLDDKLLEPLNSGHLMINPRVKDSAKELCEQLIDIYMAENDETESKITAQI 166 Query: 120 --ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 ++ + K FV RN V + I+ + +L LS Sbjct: 167 KTKIILLQFILEMWKKGFVIENDTSGRNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSEK 226 Query: 178 LLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 + + K + + SQ IT R+ A L ++++ + GY + SYFI FK Y Sbjct: 227 YISRYFKEHFHITLSQYITYLRLENAKQLLQDTDLSVTETAMQSGYQNVSYFIRSFKKAY 286 Query: 237 GMTPLHYVSQ 246 G++PL Y + Sbjct: 287 GISPLKYRNS 296 >UniRef50_C3R936 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C3R936_9BACE Length = 286 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 82/252 (32%), Gaps = 7/252 (2%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCE-NNIIDVSSLNNTLVAHISHDI 62 D + + R+ G A + L+ + + ++ + H+ + + Sbjct: 35 QHDAWELYYVVHGQGN-RMAGDTLQPFTAGDVVLIPPSMIHRWEYNADSTDEEGHVRYLM 93 Query: 63 IKDYLRFLNKDLSQIPVWQRSA----TPILTLPCLTPDVFRVAAQHSMMPAETESEKERT 118 + L + + P + P L + S + E E+ Sbjct: 94 VAFSHSLLERCIEVFPELRNRLSGVQFPTDALKFGLESSRIIRRILSEINEMDELERLSA 153 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 L V+ D M + + L +A + ++ S Sbjct: 154 MFRLLPVIFTSSDYTLAGKPMRIERDVRRMQQICAYVMKHYVHSIALDDIAEEVGMNRSA 213 Query: 179 LKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 K + ++SQ +T R+ A + L + ++++ G+N +F+ VF + G Sbjct: 214 FCSYFKRCKGMTFSQFVTQYRLNTACHLLKNTQRGVAEICYMVGFNDLPHFVRVFTNTMG 273 Query: 238 MTPLHYVSQHRE 249 M+P Y Q++ Sbjct: 274 MSPTKYRKQYKN 285 >UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Ruminococcaceae RepID=C7H5Z6_9FIRM Length = 319 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 90/242 (37%), Gaps = 9/242 (3%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 + + ++G+ +K + M ++N + ++S + L + + L Sbjct: 74 ELFYCLSGEGQFLLSGQ-LFPVKPDDMVIVNPQVEHTELSLNASPLEYIVLGVSGIEILF 132 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 I + + ++TL + + A+ E+ + +L L R Sbjct: 133 GKADSTYAIFNCRENRERMVTL------LHMLLAEADRSLDGCETVCQDLLEVLLIWLVR 186 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSEN 187 V N + + ++++ ++ +L +A ++ L K+ Sbjct: 187 CTTLSLQVE-ESPRSDNRECVEIKRYLDNNYREEISLDTLAEVAHINKYYLAHTFQKAYG 245 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 S + R+ + L G +++Q+S+ G++S SYF F+ G+TP Y Q Sbjct: 246 ISPITYLNRRRIEESKYMLGNTGYSLAQISELMGFSSPSYFSQCFRKAEGLTPNEYRRQV 305 Query: 248 RE 249 R+ Sbjct: 306 RQ 307 >UniRef50_A7VQ18 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ18_9CLOT Length = 280 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 85/252 (33%), Gaps = 9/252 (3%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 C + +E I+VNG+ + + + E++ + +S L + ++ Sbjct: 30 CHKHMELDYCSEGHCTIKVNGESYDCQPGDFVIIHTMEDHTLIRNSDCKLLGVQMDLSVL 89 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 + +P + S P + + S + E + ++ + Sbjct: 90 DTAFSPFYESQYLVPFIRGSGK--YQRRIRVPKGSLLESILSEILVEYQKKQPGYEMYIK 147 Query: 124 TVLSRFL------DSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 + R + + V +E I + +++ A C+S Sbjct: 148 GDILRLFSCLVRTKVIEIGERNVNFQDLERIKPVIDYMEQHIETELSVAAAAKIACMSYY 207 Query: 178 LLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 + K ++ + R+R A L+ + I+ ++ G+ S +YF VFK Sbjct: 208 HFCRLFKKVIGKTFVEYQNFIRIRRAEKLLITTDRTITNIAFETGFGSVAYFNRVFKKET 267 Query: 237 GMTPLHYVSQHR 248 G P +Y + R Sbjct: 268 GQAPANYRKKMR 279 >UniRef50_Q7UYE3 L-rhamnose operon transcriptional activator n=1 Tax=Rhodopirellula baltica RepID=Q7UYE3_RHOBA Length = 290 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 31/259 (11%), Positives = 79/259 (30%), Gaps = 15/259 (5%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN-NIIDVSSLNNTLVAHISHD 61 + + +++ + + G++ L ++ + + + + Sbjct: 34 LHCHEFAEIVIITGGKGVHITGEDSYELVTGDTFVIGGDRPHDYLNMDQLSLINILFDPL 93 Query: 62 II------KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK 115 + L + + P W++ L ++ + E + Sbjct: 94 ELPLSIGDLQSLSGYHALFTLEPAWRKRHQFTSRLQLNPAELIETLRYVESLDQELKQRS 153 Query: 116 ERTRA---LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 R L L FL + + I+ + +L + Sbjct: 154 AGFRTMATLTMLQLVTFLSRCYIRTRNPESKKLLRIAEAISHIQRHFDRPISLDDLVEIS 213 Query: 173 CLSPSLLKKKLKSENT---SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFI 229 +S + E T S + + R++ A L ++I+ ++ G++ ++YF Sbjct: 214 GMSRRNFIRTF--EGTMETSPIKYLIQVRIQEASRLLRSTDRSITDIAFDVGFSDSNYFS 271 Query: 230 SVFKDFYGMTPLHYVSQHR 248 F+ G++P Y Q R Sbjct: 272 RQFRTHLGLSPREYRKQMR 290 >UniRef50_C6CSY2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSY2_PAESJ Length = 533 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Query: 132 SKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSY 190 + + + ++ +D L +A+ + PS L ++ K+ ++ Sbjct: 408 EAHIRARASSSDASNPMSEIVAYLDGHYFEDVGLIDMATRYHMDPSYLSRQFKAATGVNF 467 Query: 191 SQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 + +T RM A L + +S +++ GY + YF VFK F G TP + Sbjct: 468 IEYVTRKRMEKACELLRESDRKVSDIAELVGYENQRYFSQVFKKFTGQTPSEFRE 522 >UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coprococcus RepID=A8SQD4_9FIRM Length = 300 Score = 150 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 100/252 (39%), Gaps = 18/252 (7%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 D+ I+ + + + + ++G++ + + + + + ++ + S +T V + + Sbjct: 37 HDEMEIIYVRKGPLTVEIDGQK-FTGEDGSVFIASPG--VLHMMSAPDTPVDYFTFIFPL 93 Query: 65 DYLRFLNKDLSQIPVW----------QRSATPILTLPCLTPDVFRVAAQHSMMPAETESE 114 +++ F KD + V+ + L L P + + ++ M + + Sbjct: 94 EFISFQTKDALEDEVFFPLRNHTRGFRPEVADRKLLGKLIPILDELVEENGKMGTHRQIQ 153 Query: 115 KERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCL 174 + +L + + + + + I+ + H + L+ ++ L Sbjct: 154 VRIRLLQMMDLLVEY----SQLEELTRNASGELEKEILLYIQDNYHDNIGLAELSEHFHL 209 Query: 175 SPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 S + + + + +Q + R+RYA + L ++++++ GY + SYFI F Sbjct: 210 SEKYMSRLFSERFHMTLTQYVNYVRLRYARHLLESTDLSVTEIAMKSGYQNVSYFIRRFS 269 Query: 234 DFYGMTPLHYVS 245 G +PL Y + Sbjct: 270 SAMGESPLRYRN 281 >UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM97_9FIRM Length = 283 Score = 150 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 82/247 (33%), Gaps = 7/247 (2%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII---DVSSLNNTLVAHISH 60 C+++ G + A + +L + + + H Sbjct: 33 RVPDFCVLIYVIDGCIYVTEGDTDYEVNAGELLILKNGVHHFGKKKIQKGTKWIFVHFRI 92 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLP-CLTPDVFRVAAQHSMMPAETESEKERTR 119 + F D S + + +A ILTLP L R + +S+ + Sbjct: 93 SADCNASPFY-PDASPLGAYDATAESILTLPKFLDSVSARFEKELKTFIEYAQSDDAYKK 151 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 + L L S V+ + +SD + + + +I ++ + LS + Sbjct: 152 WFINQRLFLLLSS-LAVNTQGFSNNLTLSDRICRYLSDNIGVPFSSENIEKRFYLSYKYM 210 Query: 180 KKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 K E + Q + RM A L +I +++ G++ YF F+++ G Sbjct: 211 SHLFKKEKGVTMQQYHNSVRMDEACRLLCSTLMSIGEIADKLGFSDVLYFSRCFRNYTGK 270 Query: 239 TPLHYVS 245 +P Y Sbjct: 271 SPSAYRK 277 >UniRef50_C6LHD5 Putative transcriptional regulator YfiF n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHD5_9FIRM Length = 288 Score = 149 bits (376), Expect = 9e-35, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 81/252 (32%), Gaps = 10/252 (3%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTL--VAHI 58 M+ + E + + +K + L + + + Sbjct: 40 MKSHYHNYYEIYYLEDGERYHMMQDDMYDMKPGELILFSPYIMHRSYGENDMPFKRIVLY 99 Query: 59 SHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERT 118 L+ +++ A L + ++ R S K Sbjct: 100 FESSEVASKELLDALDENNGMYRPDAATRQKLHRMLEELIRQYENPSDFY------KSYR 153 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 R LL L L + + + I S +D L +A +S Sbjct: 154 RTLLNMFLFTMLMHTRRREPEQMEETGRTTQ-IVSYIHSHYQEDITLEQLAQKFYVSQFY 212 Query: 179 LKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 L ++ K N++ Q + R+ A +LM K I+++S+ G+++ ++F VFK G Sbjct: 213 LCREFKRYTNSTVVQYVNVTRVMNAQRKLMETDKTITEISRETGFSNLTHFNRVFKSVTG 272 Query: 238 MTPLHYVSQHRE 249 TP Y H+ Sbjct: 273 TTPSGYRKHHQN 284 >UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AP83_9BACE Length = 278 Score = 149 bits (376), Expect = 9e-35, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 79/246 (32%), Gaps = 5/246 (2%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTL----VAHIS 59 D +V L + I V+ + + + E + S + S Sbjct: 27 SHDCYELVYLFSGECNILVSHTIYRMVPGTLVIIPPGEIHKTSYGSNDKVRQQRTALRFS 86 Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 L KD + + ++ + MP E +T Sbjct: 87 IKDTDWLCSALGKDFVKDNLTAGIIEVPDKRKEYIENLITRMIYENQMPDELSMGMVKTL 146 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 F + S +N V + ++ K L VA +S S L Sbjct: 147 FQEFMIFVLRCKLYGDTSAHEIDAQNSTIQDVATYVYNNYDKQIYLDDVAKQFSISRSYL 206 Query: 180 KKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 KK K + + + R++ A L+ +I+ ++ +CG+N ++YF F+ G+ Sbjct: 207 SKKFKQTTGFGFKEYLLNVRIKEACRLLLETNHSITDIAFACGFNDSNYFGDAFRRIKGI 266 Query: 239 TPLHYV 244 +P Y Sbjct: 267 SPNKYR 272 >UniRef50_C6D710 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D710_PAESJ Length = 289 Score = 149 bits (376), Expect = 9e-35, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 13/253 (5%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN--NIIDVSSLNNT-LVAHISHDIIK 64 L + + +++ + L+N + ++S N+ +V H Sbjct: 41 YEFFYLYSGERKFFIRD-SVYQIQSGDLILVNTNDVHRTSELSQPNHERIVLHYDLPFFD 99 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLP-----CLTPDVFRVAAQHSMMPAETESEKERTR 119 R + L SA PI+ L L + + P + Sbjct: 100 GLSREETELLLSPFA---SAHPIIKLNLQERMHLEALFESLLRELQECPPGYQLHVRNMA 156 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 + +R +K + + + + I + L +A +S L Sbjct: 157 TEILLFTARHALKRKSLPSIELTPVQQKVTDIIRHINQHFREPLPLDELAKQFFISKGHL 216 Query: 180 KKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 + K +SQ I R++ A L +I+Q+S+ CG+ + S+F VFK+ G+ Sbjct: 217 SRVFKEVTGFGFSQYINVTRIKEAELLLKETDWSITQISERCGFENFSHFGKVFKELSGL 276 Query: 239 TPLHYVSQHRERT 251 +P Y + + Sbjct: 277 SPRDYRKLEQNQK 289 >UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL10_BACSK Length = 298 Score = 149 bits (376), Expect = 9e-35, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 92/259 (35%), Gaps = 15/259 (5%) Query: 1 MRICSDQPCIVL-LTEKDVWIRVNGKEPISLKANHMALLNCEN-NIIDVSSLNNTLVAHI 58 M+ S + + + + + LK + L+ + + VS Sbjct: 30 MKFHSHEAAECMHVLSGSCKVETDEGS-YQLKKGQIIFLDAGTRHRLIVSERCRMFNVEF 88 Query: 59 SHDI----IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESE 114 S + + + ++ + + + A+ +L D + E + + Sbjct: 89 SFEQGCTAFPPFFKLCKENRALGNMVNKQASQLLL-----HDTDDTYQCLRRLILEVDKK 143 Query: 115 KERTRALLFTVLSRFLDSKKFVSLMM--YMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 E+T ++ +LS +L ++ + I + ++ +++ +A+ + Sbjct: 144 SEQTDFMVQLLLSEYLIRIAELAEAKVAEPDQQAYVKRALAYIHQNYDREVSVADIANSV 203 Query: 173 CLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 L P L++ K+ S + + + R+ A L +I+ + G NS YF + Sbjct: 204 HLHPGYLQRVFKAFTGKSIHEFLISYRINKAKAMLKQTDISITDIPHYIGMNSQQYFSTT 263 Query: 232 FKDFYGMTPLHYVSQHRER 250 FK TP Y +H+ Sbjct: 264 FKKHVKCTPSEYRKRHQYN 282 >UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SBA6_9FIRM Length = 286 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 75/240 (31%), Gaps = 11/240 (4%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 D I L+ V G+ + + I + + Sbjct: 41 DHYLIHLVVSGKGIFEVGGRTW-EVSEGDLFFARPSQLIRYTADEQQPWEY----SWVGF 95 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR-ALLFT 124 +K +Q+P + PD R A + + + E L+ Sbjct: 96 NGACAHKLAAQLPFTDDAPVH----HTSDPDGMRAALTNIYSSRGLQPQDEAAMVGYLYL 151 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 ++ + + + + I+ + D ++ VA + +S S L + Sbjct: 152 FIAALMRETSAGKPHTASSSSQYVLNAIKYIQFNYSHDISIDDVAKSVGVSRSHLYRVFM 211 Query: 185 -SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 + S +T R+ A L +I++V+ S G+ YF VFK G+ P Y Sbjct: 212 LNVGKSPIDYLTEYRINEACKLLRAGNLSIAEVAVSVGFFDQFYFSRVFKRAKGVPPSKY 271 >UniRef50_C7GHF4 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GHF4_9FIRM Length = 291 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 83/256 (32%), Gaps = 14/256 (5%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHI----- 58 D + + ++ + + + + L + + + +N Sbjct: 34 SHDFIEMAFILSGHGKYKIADRLYDVSEGDIIILNPGQKHQALCTDPSNPATEFFVGLCD 93 Query: 59 --SHDIIKDYLRFLNKDLSQIPVWQ--RSATPILTLPCLTPDVFRVAAQHSMMPAETES- 113 D ++YL KDL+ P Q T L ++ ++ + + Sbjct: 94 VRFGDFPENYLPLHLKDLTSDPATQSPILHTSGELRQKLFKICTAMSVENDVCRSGRYIM 153 Query: 114 EKERTRALLFTVLSRFLDSKKFVS--LMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASC 171 K +L +L + K + + V D + E + +L +A Sbjct: 154 LKSYLMQMLILLLREQSEPVKINTGCSFESTSKKYVVDQIVNYFEDHYSEKISLDQIAEN 213 Query: 172 LCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMD-GKNISQVSQSCGYNSTSYFI 229 + LSP + + K + + + R+ A L +I +V+ GY+ +F Sbjct: 214 MYLSPFYISRIFKSETGDTPIRHLINIRLEKAKELLENGFDGSIQEVAAKVGYDDVYHFS 273 Query: 230 SVFKDFYGMTPLHYVS 245 +FK +GM P Sbjct: 274 KLFKKRFGMPPSKIRR 289 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 83/244 (34%), Gaps = 9/244 (3%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSL---NNTLVAHISHDIIKD 65 I L+ + + ++ + + +V ++ + Sbjct: 34 EIFYLSSGECT-SFIDHNIYKFGKGDLVIVPSGCLHRTTYNGKGMHERIVISFRNEATEW 92 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTV 125 K+L + + + + V + + E + L + Sbjct: 93 IQNQTGKELMENCM--KPGVVNIPEKRRDYVVALLDKLIFENDSPDELSPAFIKVGLIEL 150 Query: 126 LSRFLDSKKFVSLMMYMLR--NCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 L + K + ++ + N + V I + +L VA LS S L KK Sbjct: 151 LLFIIRCKNYEENVIKEIDVDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLSKKF 210 Query: 184 K-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K + + + I R++ A N L+ K+I+ ++ CG+N ++YF F+ G++P Sbjct: 211 KTATGFGFKEYIINVRIQNACNLLLETNKSITDIAFECGFNDSNYFGDAFRKAKGISPHK 270 Query: 243 YVSQ 246 Y Sbjct: 271 YRKN 274 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 86/248 (34%), Gaps = 5/248 (2%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 I L + +N L L+ V N+T+ + + Sbjct: 32 HPYYEIYFLLSGNCSALIN-HSIYHLVPGDFVLIPQSAMHRFVYDCNSTVKRYNLFFTMD 90 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLT--PDVFRVAAQHSMMPAETESEKERTRALL 122 + D I P+L L L + + + A + Sbjct: 91 FAASLFHSDTKDILEHL-FHYPVLHLTSLLQGNATRLFDTLYQETVGQDSCSQAVIPAYI 149 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 +LS + ++ + L + + I + + +L MVA + +SP+ KK Sbjct: 150 SLILSLLVRNRDHIQLQDLDSAENAIQASARYISTHFQEPVSLHMVADYVHMSPTYYSKK 209 Query: 183 LKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 K + + +T R+ A L N+++++ CG+N +YF F+ +G++PL Sbjct: 210 FKQITGVGFKEYLTKTRLYEATELLTHTSLNVTEIAIRCGFNDGNYFGDAFRKEFGLSPL 269 Query: 242 HYVSQHRE 249 Y + + Sbjct: 270 QYRKRQKN 277 >UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM6_9FIRM Length = 241 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 88/244 (36%), Gaps = 11/244 (4%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN-NIIDVSSLNNTLVAHISHDII 63 D C +LL + I + + + ++ + N + S +N + I+ + Sbjct: 4 HDHLCELLLVSQGAGIYMIDGRRYTAQKGNLIIYNSRTVHDEFGGSGSNLVTYCIAIGGL 63 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 + + +P + L V + + E +S E L Sbjct: 64 R---------IDGLPADHLLPDGYCPVQPLRQHFAEVQSLFDAIEKEAKSHAEIANYLTM 114 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 ++++ + L ++ I+ + + L +A+ + L Sbjct: 115 ALITKLAAFLREEGLQEEQQTPTLAARARAFIDKNYKEAIRLGDIATATHTNAYYLSHLF 174 Query: 184 KSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K+E S + + R+ A N L+ I+Q++ GYN+++YF +VFK MTP Sbjct: 175 KAEIGLSPMKYVILRRIGEAQNLLINTDMTITQIAAQVGYNNSNYFQNVFKGALDMTPGE 234 Query: 243 YVSQ 246 Y + Sbjct: 235 YRRK 238 >UniRef50_A4WEG5 Transcriptional regulator, AraC family n=5 Tax=Enterobacteriaceae RepID=A4WEG5_ENT38 Length = 279 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 87/253 (34%), Gaps = 12/253 (4%) Query: 1 MRICSDQPCI-VLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHIS 59 +R C+ +L E+ + + +++ + + ++ A Sbjct: 30 VRYHHWHQCLEILYVEEGFGVAIVDNRHYTMRPGRLFFFPPFT--LHKVMVDEQAEAIYR 87 Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTL--PCLTPDVFRVAAQHSMMPAETE--SEK 115 II + K L P Q+ + D+ + + Sbjct: 88 RTIIHLDHHAVLKVLRDFPQTQQRLQKLSRRGGEAWVADMADCHPHIHHLFSGYHPPLTS 147 Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 E +L+ ++ + D K + ++ V ++ + ++L +A L S Sbjct: 148 ESVASLIISLFAMLPDDKDGAP----GSSHGIASQVMFWLDEHYQQKFSLDALAGELGKS 203 Query: 176 PSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 S + +K + T R+R A L+ +++ ++ G++ +YFIS FK Sbjct: 204 RSYVSRKFHAETGEKIHDYLNTLRLRKACECLLHSNESVRDIATRVGFSDVTYFISAFKK 263 Query: 235 FYGMTPLHYVSQH 247 G TPL Y H Sbjct: 264 GIGETPLQYRKNH 276 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 109/252 (43%), Gaps = 15/252 (5%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 R+ D+P ++ + +R G+E ++++A M LL DV + + + Sbjct: 28 RMAVDEPTLLYIQVGQKTLRWRGQE-LTIQAGEMVLLAAG-QTFDVLNNPDAKLGFYQAG 85 Query: 62 IIKDYLRFLNK--DLSQIPVWQRSATPILTLPCLT--PDVFRVAAQHSMMPAETESEKER 117 I R +++ DL + + + I L L DV R A ++ P K Sbjct: 86 WIALEQRVVDEFADLFGVETYVQELAKIQPLAPLKAHFDVVRQALENDEAPELVLKLK-- 143 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 LF +L+ + +S + + N + + ++I S+ +W +A L LS + Sbjct: 144 ----LFELLAWL--KAEHLSFVPHEKHN-LLRQIRKMIASNTAFEWTAETIARQLHLSET 196 Query: 178 LLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 L++ L+ +T++ +++T RM A+ L + +++++ GY+S S F FK +G Sbjct: 197 SLRRALQKSDTTFREVLTDVRMSRALTLLQITKWQVARIANEVGYDSPSRFTVRFKQRFG 256 Query: 238 MTPLHYVSQHRE 249 P + Sbjct: 257 FLPSDIRENLSQ 268 >UniRef50_UPI0001969E72 hypothetical protein BACCELL_04741 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001969E72 Length = 291 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 78/244 (31%), Gaps = 7/244 (2%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNT----LVAHISHDII 63 + + +R+ G + ++ E ++T +A+I+ Sbjct: 30 WELSYVIVGSG-MRLIGDMTEPFLGGEVVMIPPEIPHCWYFEDDDTDEQGRIANITVTFD 88 Query: 64 KDYLRFLNKDLSQIPV-WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 D+L + ++ + + + M ++E+E+ + L Sbjct: 89 NDFLDRCSGTFPELCGHIDKLKKKYDAVKFDKEKSEAIIDLLEEMCNQSEAERVASMIKL 148 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 +++ + + + + +D L VA + ++ + Sbjct: 149 ILIMADSGSEHVVGKYQRIDKETKRMNQIQTYVICNAKRDITLDDVARYVGMNRASFCIF 208 Query: 183 LKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 K ++ + R+ A L +S++ + G+N+ YF FK G++P Sbjct: 209 FKKATGKTFVTYLNEYRIGLACQLLKQKRMTVSEICYNVGFNNVPYFNRTFKRHKGVSPC 268 Query: 242 HYVS 245 Y Sbjct: 269 EYKQ 272 >UniRef50_A9KN44 Transcriptional regulator, AraC family n=3 Tax=Clostridiales RepID=A9KN44_CLOPH Length = 278 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 80/243 (32%), Gaps = 9/243 (3%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 D I + + N + L + + L+ + + + + + D Sbjct: 43 DHYLIHYIVSGKGYYETN-HKTFPLTSGDVFLIYPDTQVTYYADALDPWEYYWVGFSGSD 101 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTV 125 L +P+++ V Q + L+ Sbjct: 102 AGLILEATDFSNE------SPVISSCSYGEKVKDQLYQIYEARGNEFANAVAMAGQLYIT 155 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 LS FL + + +ES + VA+ + +S S L ++ K+ Sbjct: 156 LSLFLSGASNHN-KKHHQNLDYVQKGITYMESHFSYPITIDDVAAYVGISRSHLFREFKA 214 Query: 186 E-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 S + ++ R++Y+ L +I ++ S GY++ Y+ VF+ GM P Y Sbjct: 215 HLGKSPKEYLSEYRIKYSCTLLKNTDLSIGAIATSVGYDNGLYYSKVFQSVKGMPPSKYR 274 Query: 245 SQH 247 + H Sbjct: 275 NLH 277 >UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYL2_9BACL Length = 530 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 1/112 (0%) Query: 139 MMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTC 197 + +++ ++IE + D NLS +A + S L K S+ Q +T Sbjct: 418 DSTREEPSIVEAMKEMIELNYMNDLNLSQIAEQYHYNLSYLSDLFKTKTGKSFLQYLTDV 477 Query: 198 RMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 RM AV L ++S +++ G+++ SYF + FK +G++P Y + + Sbjct: 478 RMNKAVQLLDETPLSLSDIAELTGFSNASYFSTKFKKVFGISPSEYRQKDKN 529 >UniRef50_UPI0001788F54 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F54 Length = 523 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 1/141 (0%) Query: 111 TESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVAS 170 + ++ R V+ F+ + N D + + I+ L+ VA Sbjct: 379 RKIDEARYAGEAIAVVEAFIREAERAIGETNTSVNPNMDRLLEYIQDHYADPITLTGVAR 438 Query: 171 CLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFI 229 + S L S +S+ + R+ A+ L+ IS++S S GY+ SYF Sbjct: 439 QFHFNASYLSSYFASYNGEGFSEYLNKIRLEKAMELLLTTELTISEISASVGYSDQSYFT 498 Query: 230 SVFKDFYGMTPLHYVSQHRER 250 VFK G++P + Q+ Sbjct: 499 KVFKKQTGISPSQFRRQNARE 519 >UniRef50_B0MKI2 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKI2_9FIRM Length = 284 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 80/246 (32%), Gaps = 5/246 (2%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANH-MALLNCENNIIDVSSLNNTLVAHISHDII 63 ++ I+ + + ++G + A ++ + + Sbjct: 38 HNECEIIYVRSGYFELFLDG-HTHRIDAGCCSLIIGGSMHGGTPKDNCRYDCLVFDMAAL 96 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTL--PCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 + L I +R + + A P + R + Sbjct: 97 LKSSQICTLHLQPIINHERRFITFFSADSEPAKDAKAVIDAMLEKEPGYEFTVPGRLLCM 156 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 L +++R + + + + +V IE + K+ L +A+ ++ + + Sbjct: 157 LGHIVARQEHYQSGETAASDIKKVRRFKNVISYIEQNYRKNITLEELANECGMNRNYFCR 216 Query: 182 KLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K + + + R+ A + + + ++ CG+N SYFI VFK G+TP Sbjct: 217 AFKEYTGKTPVEYLNYFRIESACELIASTDEKLIDIAMKCGFNDYSYFIKVFKSMKGVTP 276 Query: 241 LHYVSQ 246 Y + Sbjct: 277 RDYCRR 282 >UniRef50_C3WEF1 Putative uncharacterized protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WEF1_FUSMR Length = 285 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 8/242 (3%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRF 69 I+ + + I V + L+ ++ + N + I Sbjct: 37 ILHIVLEGKGIFVVDNKKYFLEKGQGFIIEPNIVTFYQADAKNP----WKYFWIGFDGEG 92 Query: 70 LNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRF 129 K L ++ + Q PI L ++F + + T +E+ + + L + S Sbjct: 93 AEKYLRELGIIQ--HKPIFRTDKLD-ELFSLLKEMLKRKNLTLAEELKLQGLFYEFFSLI 149 Query: 130 LDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENT 188 ++ N D + I+++ D N++ + + L+ S L K Sbjct: 150 VEENSIEEKDEKNELNPYVDKIITYIKNNYWDDINVNNIIEYVGLNRSYLSTLFKKNMGI 209 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 + + +T R+ A L + ++I V+ SCGY F +K YG+TP + + R Sbjct: 210 TIQEYLTVFRLSRANELLDITNESIENVANSCGYKDPLVFTKAYKKKYGVTPTQHRKKDR 269 Query: 249 ER 250 + Sbjct: 270 KE 271 >UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=Clostridiales RepID=C6JEP4_9FIRM Length = 531 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 L L + + + + D + I + +D +L V+ + +SP Sbjct: 400 IENLKKWFLDKTREICTKLENSKEKEAGSIIDRAKEYINENFRRDISLDDVSREVDISPY 459 Query: 178 LLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 K K E ++ + +T R++ A L +I ++ GY+ +YF +FK + Sbjct: 460 YFSKLFKQETGKNFIEYLTEIRLKNARELLQDSRLSIKEICAQSGYSDPNYFSRIFKKYE 519 Query: 237 GMTPLHYVSQ 246 G+TP + + Sbjct: 520 GVTPSEFRER 529 >UniRef50_C5EQL5 Transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQL5_9FIRM Length = 290 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 82/245 (33%), Gaps = 6/245 (2%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 I L + + ++ LK ++ + K Sbjct: 40 HSYYEIYYLLSGQCRMFI-DQDIYYLKPGDAVIIPPLQIHRALYEEG-LQAERYDMYFTK 97 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPC-LTPDVFRVAAQHSMMPAETESEKERTRALLF 123 + + + + P + +P L P + + + S + ++ + L Sbjct: 98 EEADAFHASCGREGFERVFLNPRIAIPQPLRPGIEGLLSHLSHENGQEDAYSHVQQQSLL 157 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSD--SVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 + + + L + + + I + L +A+ +SP+ + Sbjct: 158 FQILVLIGRCQDTQQEKDSLNDSEAAIVKAARYINLQYREHLTLDAMAAMSNMSPTYFSR 217 Query: 182 KLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K ++ + + + R++ A + L ++ ++ +CG++ +YF VFK G++P Sbjct: 218 KFRASTGFCFKEYVNYIRVQKASDLLRNTDGTVTSIAIACGFSDGNYFGDVFKKLTGLSP 277 Query: 241 LHYVS 245 Y + Sbjct: 278 REYRN 282 >UniRef50_A4BH94 Transcriptional regulator, AraC/XylS family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BH94_9GAMM Length = 305 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 98/241 (40%), Gaps = 13/241 (5%) Query: 11 VLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFL 70 + + + + ++VN + SL+ + +N +++ ++ ++ LV + H Sbjct: 36 LWVLQGAIRVQVNDHQ-YSLRDGDLLFINADDHHATEAASDDNLVLCLQHRF-------- 86 Query: 71 NKDLSQIPVWQRSATPILT--LPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 ++L + V ++ P+L L L + + + PA + E A L +L R Sbjct: 87 -EELVNVSVAPGTSNPVLKARLNDLRTTLAHLWWEQKYQPAHWQLATENGLAQLQLILLR 145 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SEN 187 + S + + + +E+ + +L+ ++ LS + L K Sbjct: 146 YFSSASPAPAESRDDASWRIQQITRYLEAHYREPISLTSLSEHFGLSETYLSHYFKDKTG 205 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 ++ + +T R+ + +L+ +++++ G+ S F S FK Y TP + Q Sbjct: 206 STLVRWLTQLRLERCLPDLIQTDSTVAELALEHGFPSIKAFNSAFKREYQCTPSEFRQQQ 265 Query: 248 R 248 + Sbjct: 266 Q 266 >UniRef50_C9PFA6 L-rhamnose operon regulatory protein rhaS n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PFA6_VIBFU Length = 268 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 94/242 (38%), Gaps = 6/242 (2%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 D ++++T+ + PI+L N++ ++ ++ + S N L + Sbjct: 32 SHDFHELMIVTKGAGQ-HILNDVPINLAQNYICYISPKDRHLFEQSDNLHLTNILFQKNK 90 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 Y L L + Q+S V + AQ + E LF Sbjct: 91 LAYSPLLKSVLPKESDAQQS---WYISTETMKKVCTLMAQIEHESSLHSVESRLMTEALF 147 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 L + + S N + + I+++ +++N+ ++ +S L +++ Sbjct: 148 QQLVVEISRGRLTSQSNNASDNSIL-KIIDWIQNNYAEEFNVGDISDQFEISSRTLSRRI 206 Query: 184 KS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K N S++ + R+ +A+N L +++ ++ GY ++YF + FK F TP Sbjct: 207 KQVTNLSFNNYVHRVRINHAMNLLHYSDLSVTDIAFQVGYKDSNYFSTKFKRFTNKTPTE 266 Query: 243 YV 244 + Sbjct: 267 FR 268 >UniRef50_P32677 Uncharacterized HTH-type transcriptional regulator yijO n=33 Tax=Gammaproteobacteria RepID=YIJO_ECOLI Length = 283 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 82/251 (32%), Gaps = 11/251 (4%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 + D P + ++ E + V+ +L + + T + + Sbjct: 34 LAYQVDFPRLEIVLEGEF---VDTGAGATLVPGDVLYVPAGGWNFPQWQAPATTFSVLFG 90 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 + + D Q + + P + Q E++ R Sbjct: 91 KQ-QLGFSVVQWDGKQYQNLAKQH-----VARRGPRIGSFLLQTLNEMQMQPQEQQTARL 144 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 ++ ++LS D + + +++ I+ VA +SP+ L Sbjct: 145 IVASLLSHCRDLLGS-QIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLS 203 Query: 181 KKLKSEN-TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 + +++ + R+ +A L + +V+ +CG+ ++YF +F+ + Sbjct: 204 HLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERS 263 Query: 240 PLHYVSQHRER 250 P Y Q+ + Sbjct: 264 PSEYRRQYHSQ 274 >UniRef50_C6CWE3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWE3_PAESJ Length = 278 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 90/248 (36%), Gaps = 8/248 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 D +++ + G + S + + N + SS++N L+ + + Sbjct: 33 HDDLHEIIVVCGGQGMFTIGGQSYSASGGDILVYNKGVLHEEQSSIDNPLITYYCGFSLP 92 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKE-RTRALLF 123 + + P++ + P++ + + E E +R L+ Sbjct: 93 KASPSEDWVIPP------DVEPVIRSSRVFPEIEALMKMIVDESSIKEDGYEGISRYLIN 146 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 +V+ + + + +++ + I+ + ++ +L + ++P + Sbjct: 147 SVILLLRRAVRNQQHIKQESNTGLAEQIKDYIDRNFTQNISLKDLGRQFHVNPYYISHVF 206 Query: 184 KSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K S R+ A L+ + +V++ GY++ +YF +F+ G++P Sbjct: 207 KDHYRISPINYAIHRRIGEATRLLVTTEMKVWEVAKLLGYDNPNYFSIIFRRVTGLSPNR 266 Query: 243 YVSQHRER 250 + +++ Sbjct: 267 FRESNQQN 274 >UniRef50_Q65MB5 Probable transcriptional regulator n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65MB5_BACLD Length = 281 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 87/248 (35%), Gaps = 10/248 (4%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVS---SLNNTLVAHISHDIIK 64 + L + +N + + + M ++N + S ++ + SHD I+ Sbjct: 35 YELYYLLSGERTYFIN-QSVYTAEKGTMIIINPHDLHRTSSTEVQEFERILINFSHDFIE 93 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 L+ + L P Q +L + + E ++ RALLF Sbjct: 94 PLLKCSHYRLLPFPENQ--NFIAFSLREQAAVEHMLMEMKKECKLKKEGHEDVVRALLFQ 151 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQ---IIESDIHKDWNLSMVASCLCLSPSLLKK 181 +L S + + + + + I + L +A +SPS L + Sbjct: 152 LLFTIYRSLAGGGRNQTRPLHPMDEKISEIASYINCSFQETMTLDGLAGQFYISPSYLSR 211 Query: 182 KLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K + I R+R A L + I ++ G+ S+F VFK+ G+ P Sbjct: 212 VFKKVTGFHLQEYIRHIRIREAKKRLRDTDEKILDIAADTGFKHISHFNKVFKEIVGIPP 271 Query: 241 LHYVSQHR 248 L Y + R Sbjct: 272 LQYRKKSR 279 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 9/240 (3%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C ++L +R+ GKE I K + L+ + S+ ++ ++ + + D+ + Sbjct: 5 CSIILVLNSFGVRI-GKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVNDFFK 63 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFR-VAAQHSMMPAETESEKERTRALLFTVLS 127 +R L + C + + + A + + + + VLS Sbjct: 64 ---NYTLSPFSVRRFYPSYLIVECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLAVLS 120 Query: 128 RFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSEN 187 S+K V ++ N + V II SDI W L ++S L +S SLLK+KLK E Sbjct: 121 ----SEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEG 176 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 S+S++I RM A L+ + +V+ CGY++ SYF+SVF+ ++G+ P Y+S+ Sbjct: 177 LSFSKLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQYLSRF 236 >UniRef50_UPI0001C3522D two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3522D Length = 495 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 14/229 (6%) Query: 32 ANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLN--------KDLSQIPVWQRS 83 NH + D HIS DI+ D LR + +DL + +++ Sbjct: 264 ENHFFFPEQNIFLPDGPDHPYAASGHISIDIVSDDLRLKDYDSLMHHLEDLFESLKHEKT 323 Query: 84 ATPILTLPCLTPDVFRVAAQHSMMP---AETESEKERTRALLFTVLSRFLDSKKFVSLMM 140 + I C T + + +EK + A + ++ K + Sbjct: 324 HSLIFVKYCFTELMKEIIHYLPDDQKPDLNKVAEKIYSSANIVELMDMTCSQAKKLLSQT 383 Query: 141 YMLRNCV--SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTC 197 + SD + Q I + + +L+ ++S +SP+ L K E + + I Sbjct: 384 QKNQGSCLKSDKIRQYIYQNYTQPLSLNDISSHFYISPNYLCSVFKKETGCNLMKFINEY 443 Query: 198 RMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 R+ A L+ +++++++ G+++ SYF F+D+YG +P +Y + Sbjct: 444 RLEQAAKLLLETEMKVNKIAETVGFSNPSYFSQRFRDYYGESPENYRQK 492 >UniRef50_C3X327 AraC family transcriptional regulator n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X327_OXAFO Length = 289 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 96/260 (36%), Gaps = 19/260 (7%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDV---------SSLNNTL 54 C ++ +V++T + G + +A M L+ + + + S + Sbjct: 30 CHEEYELVIVTAGTGREYI-GHAVENYRAGDMTLIGPDIPHLHLCDSLTGKNGSEESACE 88 Query: 55 VAHISHDIIKDYLRFLNKDLSQIPVWQRSATPI-LTLPCLTPDVFRVAAQHSMMPAETES 113 + + S + D + + + + V ++S + + P LT + + + Sbjct: 89 ILYFSPSLFPDNMDGIAEYRAIAAVLEKSRRGVRYSDPALTRQIRKQVQRLDK---GQGI 145 Query: 114 EKERTRALLFTVLSRFLDSKKFVSLMMYM----LRNCVSDSVYQIIESDIHKDWNLSMVA 169 + R L L+R ++ S + R D+V + + ++ L +A Sbjct: 146 GRIRWLLALLDTLARSQETSLIASGPVRNGTALRRQETVDTVCRYLREHFRENLCLQAIA 205 Query: 170 SCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYF 228 C++PS L + + + + R+ A L+ +IS ++ G+ + S+F Sbjct: 206 REACMNPSALCRHFRQRTGKTLFAFLAGIRIENACRLLLETRLSISAIAWETGFANLSHF 265 Query: 229 ISVFKDFYGMTPLHYVSQHR 248 FK G TP Y R Sbjct: 266 NRQFKSLTGQTPGEYRKNIR 285 >UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017894C2 Length = 310 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 94/261 (36%), Gaps = 19/261 (7%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAH---ISH 60 C D I + + + ++ ++ + ++ S + + + Sbjct: 48 CHDYFQIWYVAKGAF-LHTVQQQVYEIRKGDIFVIPPFTLHSVSISPDEDIEIYGCEFMP 106 Query: 61 DIIKDYLR--------FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAET- 111 + + + F L + +A +TL +T R + ++ E Sbjct: 107 SFVNERFQEQPTDHAFFDVAFLEYFLRKEMNAQSQITLDSVTDVTVRNVLKDMLIEYERR 166 Query: 112 ----ESEKERTRALLFTVLSRFLDSKKFVS-LMMYMLRNCVSDSVYQIIESDIHKDWNLS 166 + + +L ++L+R ++ + + V I + +D NL+ Sbjct: 167 TPFFQISLKAKLLVLLSILARQVNGELLREGFEKSEKYREIMTRVVDHIHNHYQEDMNLN 226 Query: 167 MVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNST 225 + S LS S K ++++ +T R+ A+ L +++ V S G+N Sbjct: 227 DLCSLSNLSRSTFCILFKEWTGKTFNRYLTDLRILQAMMMLKQPELSVTDVCYSTGFNEL 286 Query: 226 SYFISVFKDFYGMTPLHYVSQ 246 SYF +FK + G++P + Q Sbjct: 287 SYFCRIFKKYTGISPTDFRKQ 307 >UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dictyoglomus RepID=B5YFJ6_DICT6 Length = 287 Score = 146 bits (370), Expect = 4e-34, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 94/247 (38%), Gaps = 5/247 (2%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI-IDVSSLNNTLVAHISHDII 63 ++ I+ + V+G E + ++ + + + +++ + ++ Sbjct: 41 HNEFEILYMERGIGKFYVDGYEYKLNEGEYLFVNSGSIHSGLEMIKRSIGYAIVFDLRLL 100 Query: 64 KDYLRFLNKDLSQIPVWQR--SATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 K +P+ + L + D+ R+ E + Sbjct: 101 YSEEPDYCKHEYFLPLINKRYHIPSNLNDEHIRNDICRIIEVFKEKSYGYELYIKSLLFD 160 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 +F + ++ ++ + + D V I + +K+ +L ++ + +S L + Sbjct: 161 IFWRVFKYYAERRNQDGRLGYKIERIKD-VLNYINQNYNKNLSLDELSRQVDMSKFYLCR 219 Query: 182 KLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K S + I R+ A+ L+ ++S+++ CG+++ SYFI VFK + TP Sbjct: 220 LFKESLRMSPVEYINKVRVDKAMELLINTDMSVSEIAFECGFDNISYFIKVFKKYMHTTP 279 Query: 241 LHYVSQH 247 L + Q+ Sbjct: 280 LKFRKQN 286 >UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8RTE5_9CLOT Length = 310 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 88/245 (35%), Gaps = 7/245 (2%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 + L+ E + +N ++ + + + E + I+ N T+V I + Y+ Sbjct: 39 ELFLVLEGTLDFFINSRQYTLKPNDFVIVNPNEIHSIECPDPNITIVLQIPMKSFEGYMS 98 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 ++ + A + + + K + L+ +++ Sbjct: 99 DESRITFADKDESQKARLVALVTAM------YRTYEKGEFGYRLKVKSQFMEFLYLIVTE 152 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENT 188 F + + V Q ++ + K+ +L MVAS +PS L + Sbjct: 153 FRIEQIDKVRVQQKRHLDKLSQVTQYMKENYDKELSLEMVASRFGFTPSYLSHMFREYAQ 212 Query: 189 S-YSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 + Y + R++YA+ EL+ + + ++ G+ F FK YG P Y Q Sbjct: 213 TGYRTYLMDLRVKYAMRELLNSDRYVGDIALDHGFADARAFAKAFKKRYGCLPSQYRKQM 272 Query: 248 RERTV 252 ++ V Sbjct: 273 NQKQV 277 >UniRef50_C6D1V9 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1V9_PAESJ Length = 279 Score = 146 bits (369), Expect = 7e-34, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 83/252 (32%), Gaps = 10/252 (3%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTL-----VAHI 58 Q + + E + ++GK S++ N + + + V Sbjct: 26 AHSQMELTYVHEGRGLLIIDGKS-YSIEPNTLLVFPPFQMHRIQIQVTEAEPFIRSVLLF 84 Query: 59 SHDIIKDY---LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK 115 ++ Y L ++ + Q + P+ +P P V + M + E++ Sbjct: 85 EPAVLHGYLNDFPSLKSFFQRLMLQQANVHPVNAMPENEPFVALLRQFSITMGGKREADF 144 Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 E + L L N + + IE + L +A L LS Sbjct: 145 EENMGVFLLSLVHQLKQSPDGESAYLKKHNLHVEEIIGWIEKHYMDPFRLEDLAGELHLS 204 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 P + K T+ R+R+A + L +S++ G + SYF +F+ Sbjct: 205 PYHVAHLFKESTGTTIVAYTQATRIRHACSLLRKTTLPLSEIGYRVGIANPSYFSKIFRQ 264 Query: 235 FYGMTPLHYVSQ 246 G+ PL Y Sbjct: 265 IMGVAPLTYRQH 276 >UniRef50_C0EIL7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIL7_9CLOT Length = 332 Score = 146 bits (369), Expect = 7e-34, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 96/254 (37%), Gaps = 19/254 (7%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 +V + +E I L + LLN ++L + + +I K + + Sbjct: 78 ELVYVYHGSCVNLFPNQERIVLNQGDILLLNPNALHCPYTTLEDDYIFNIVLK-PKLFEK 136 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPD--------VFRVAAQHSMMPAETESEK----- 115 + LS P++ + D R+A + E S++ Sbjct: 137 SMLSLLSDNPLFSNFFVNYMYRVNKARDYMLFHTNGEKRIAQTMENIITELYSKEMCYRR 196 Query: 116 --ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLC 173 E +LFT L+R + + + V+D + ++ + + L VA Sbjct: 197 AAEAELIVLFTCLARIYKEQLGLKGFDEVKNKQVTD-IITYMDENFSQA-TLQSVADHFG 254 Query: 174 LSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVF 232 S L + +K N ++S+II + ++ A L + ++++ G+N SYF VF Sbjct: 255 YSTHYLSRMIKKHTNKNFSEIIHSFKLENACTYLETTDIPMREIAELVGFNDASYFHKVF 314 Query: 233 KDFYGMTPLHYVSQ 246 K YG +P Y Q Sbjct: 315 KQKYGQSPAEYRKQ 328 >UniRef50_UPI0001C358FB two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C358FB Length = 273 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 5/195 (2%) Query: 58 ISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKER 117 IS +II ++ A + P +++++ +S+K R Sbjct: 75 ISPEIICVFVSAYTDFEYAKAAIANGARGYILKPVEPEEMYQLLKTVKA--EWMQSQKHR 132 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLR--NCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 + L R L ++ M + V +E H+D +L ++ + L+ Sbjct: 133 KKVQLMETEIRKLKAEHLTDDMPVDSNGCSRVIRKALNYMEDHYHEDISLESISEVVFLN 192 Query: 176 PSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 + + K E S+ Q +T R+ A L + G S+V+ G+ + SYFISVFK Sbjct: 193 KNYFSELFKKETGKSFVQYLTEYRLEKAKLLLAISGFKGSEVADMTGFQNNSYFISVFKK 252 Query: 235 FYGMTPLHYVSQHRE 249 + G TP Y + Sbjct: 253 YVGCTPKEYSESLHQ 267 >UniRef50_C5RE92 Transcriptional regulator, AraC family n=3 Tax=Clostridiales RepID=C5RE92_CLOCL Length = 286 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 92/248 (37%), Gaps = 9/248 (3%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDY 66 + I+ + + + +NG E + LK +A ++ + Sbjct: 40 EYEIIRIISGEFLLTLNGNE-LKLKTGDLAFIHAGILHGGTPIDCVYECIVFDMKSLLKV 98 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKE-RTRALLFTV 125 +K + I S LP ++ V A+ + E T+ L+ + Sbjct: 99 NSTCSKQIQDI--IHNSKVINSLLPTDNLELQTVCNYLFESMAQKKLGYELVTQGSLYHL 156 Query: 126 LSRFLDSKKFVSLMMYMLRN----CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 L L+ + + + +N +V +IE L ++ ++P + Sbjct: 157 LGIILEHRLYSTPKEATSKNQQRINQFKNVLSLIEQQYPDPLTLEDLSKAAGMTPKYFCR 216 Query: 182 KLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 + S + R+ + +L+ ++I++++ +CG+N SYFI FK + G+TP Sbjct: 217 FFRGMTQRSPIDYLNYYRIESSCEQLVSTNESITEIALNCGFNDISYFIKTFKKYKGVTP 276 Query: 241 LHYVSQHR 248 Y+ + Sbjct: 277 KQYLKDYH 284 >UniRef50_C7H3E2 Transcriptional regulator, AraC family n=4 Tax=Clostridiales RepID=C7H3E2_9FIRM Length = 306 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 9/246 (3%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDY 66 I+ + +G E + + + HM L + V + + H D Sbjct: 67 DYQILYVASGKAHFWFDGVEEV-VTSGHMVLYQPKEIQKYVYYVEDHPEVFWIHFTGYDV 125 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 LN + + TLP ++ + E A LF ++ Sbjct: 126 KNILNYHGIPL---DKHVFYSGTLPDYKMLFRKIIRELQQCEYGY----EDYIASLFNII 178 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE 186 + ++ S ++ + + ++ A L +S + + K Sbjct: 179 LFLVSRQQQESEKTTTSIPEEIEAAVAYFNENYNTKVSVDDYAESLHISTNWFIRNFKQY 238 Query: 187 -NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 S +Q I + RM A + L NI ++++ GY++ YF VFK YG++P Y Sbjct: 239 MKISPAQYILSLRMVNAQSLLENTEYNIGEIAEIVGYDNPLYFSRVFKKEYGVSPAQYRK 298 Query: 246 QHRERT 251 E T Sbjct: 299 NLEEST 304 >UniRef50_C9KMJ8 Methylphosphotriester-DNA alkyltransferase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMJ8_9FIRM Length = 283 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 8/244 (3%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN-NIIDVSSLNNTLVAHISHDIIKDYL 67 I+ + + + + + L + + L+N + + SS HI + Sbjct: 45 EILFIEKGHCRMHLKEGS-LQLHTDDLILVNSDTLHDFKTSSSFTAFTIHIGALHLCGLA 103 Query: 68 RF-LNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 L K + + + + L L +V +AA E +AL+ +V Sbjct: 104 PGHLTKSEAPLVLPLGKDGRHIFLRQLLKEVKLLAALKGEDDERCEIGAALAQALVISVT 163 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS- 185 + + + + + + I++ +D L+ +A L ++ L K Sbjct: 164 ALAEEDAGNEENPSF----TMGTRIKEYIDAHYLEDLKLADIAEALHINLYYLSHTFKDL 219 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 +S Q I R+ A L+ I+ ++ CGYN+++YF SVF + GM P Y Sbjct: 220 TGSSPMQYIIRRRIEEAQTLLLTTNMTITDIAMQCGYNNSNYFQSVFSNIVGMPPGKYRK 279 Query: 246 QHRE 249 + Sbjct: 280 AWAQ 283 >UniRef50_C3SIM7 Membrane protein n=86 Tax=Enterobacteriaceae RepID=C3SIM7_ECOLX Length = 283 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 82/251 (32%), Gaps = 11/251 (4%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 + D P + ++ E + V+ +L + + T + + Sbjct: 34 LAYQVDFPRLEIVLEGEF---VDTGAGATLVPGDVLYVAAGGWNFPQWQAPATTFSVLFG 90 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 + + D Q + + P + Q E++ R Sbjct: 91 KQ-QLGFSVVQWDGKQYQNLAKQH-----VARRGPRIGSFLLQTLNEMQMQPQEQQTARL 144 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 ++ ++LS D + + +++ I+ VA +SP+ L Sbjct: 145 IVASLLSHCRDLLGS-QIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLS 203 Query: 181 KKLKSEN-TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 + +++ + R+ +A L + +V+ +CG+ ++YF +F+ + Sbjct: 204 HLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERS 263 Query: 240 PLHYVSQHRER 250 P Y Q+ + Sbjct: 264 PSEYRRQYHSQ 274 >UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLV0_9BACI Length = 525 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 79/225 (35%), Gaps = 9/225 (4%) Query: 36 ALLNCENNIIDVSSLNNTLVA-----HISHDIIKDYLRFLNKDLSQIPVWQRSATPILTL 90 L +++D S+ + I I + + L Sbjct: 301 ILNTPLLHLLDYSNDLKWALRSGSMEQIDTQINSLFNLLEKDFTFSLDQIATWDRQFELL 360 Query: 91 PCLTPDVFRVAAQHSMMPAETESEKERTRAL---LFTVLSRFLDSKKFVSLMMYMLRNCV 147 + + + + + E +++ T +L F + K +S Y Sbjct: 361 KNNWLKEYEINNEVTFVKREDYWKEDGTFSLPKFKKEKADEFKELVKILSDAKYQKEKNS 420 Query: 148 SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNEL 206 + + ++ + +D NL +A LS + +K K + + + +T+ RM A N L Sbjct: 421 MQRIEEYLQKNYQEDINLQEIADRFYLSREYISRKFKQDYDATITDYLTSIRMEKAKNLL 480 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRERT 251 I +V+ GY + YF VFK G+TP Y + ++ Sbjct: 481 KNPYLKIYEVAYGVGYQNEKYFSKVFKKHEGVTPNEYRQSYSTKS 525 >UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=Clostridium RepID=A3DHI5_CLOTH Length = 302 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 81/254 (31%), Gaps = 12/254 (4%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN-NIIDVSSLNNTLVAHISHDIIK--- 64 +V + + G P + N + ++ + V S + +S + Sbjct: 49 EMVYIKRGKAVFEIAGY-PAEIGPNDIIIIKPNQPHKFIVKSESGCEFIVLSFKFVNRFD 107 Query: 65 -DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 Y ++ + + I D+ + + + E LL Sbjct: 108 GQYSDVSLENFLDFVSGKETGPFITLKVSQKNDIIVLLNRILKERENPDIGSEFLNYLLV 167 Query: 124 TVLSRFLDSKKFVSLMMYMLRNC-----VSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 L + + + + + I ++ +D +L +A + LS S Sbjct: 168 MELFVLISRALKMEWENSIKNKSPKIKELIQASVNYINNNYERDISLKDIARYVFLSTSY 227 Query: 179 LKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 + K E S + R+ A L IS ++ S G+++ F +FK + Sbjct: 228 FTRAFKEEMGISPINYLLKIRVERAKELLKDTDNRISDIALSVGFSNQQRFNDIFKKYVK 287 Query: 238 MTPLHYVSQHRERT 251 +TPL Y + + Sbjct: 288 LTPLQYRKNVQVKK 301 >UniRef50_A7B0Y7 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0Y7_RUMGN Length = 276 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 85/248 (34%), Gaps = 10/248 (4%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 ++ + + N +E L+ + ++ + SS N+ L ++ Sbjct: 38 THHFTELLFVVSGEGSFSFN-QEQSPLRRGDLVIIPPYTEHTERSSQNHPLEYYVLGIDG 96 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 +L +++ +Q+ I L R A S + E Sbjct: 97 ISFLSQKDRECAQVFCNFEHDPSIHELFRQMLYEIRTAQYGSQTICQHLLEILIL----- 151 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 + + + + + ++S+ + L + ++ + Sbjct: 152 ---KIIRSQQLIPVSINSIRMTKECAQIKEYLDSNYAEHITLDTLTGLTHMNKYYMVHSF 208 Query: 184 -KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K S Q + R++ A + L +IS ++ S G++S SYF +F+ + MTP+ Sbjct: 209 TKYAGLSPIQYLNQTRLKRAQHLLKNTNYSISDIASSTGFSSQSYFTQIFRKNFNMTPVK 268 Query: 243 YVSQHRER 250 Y +H + Sbjct: 269 YRQEHAKN 276 >UniRef50_Q8YSB8 Transcriptional regulator n=2 Tax=Nostocaceae RepID=Q8YSB8_ANASP Length = 306 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 78/226 (34%), Gaps = 5/226 (2%) Query: 26 EPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSAT 85 + ++ +A++ + + I + + DL +I + R A Sbjct: 82 QYENIAKGDVAIIPAQTHHISRWQSETKFLVLSVEPAFFTRMVIEAGDLQKIEIKPRFAA 141 Query: 86 PILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYML-- 143 P L + + + E T L +L + + + + Sbjct: 142 PD-PLVQQIGLALQTELESEHKGSSIYIESLTT-TLCIHLLKHYCVTGGTILDDHHHKGL 199 Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYA 202 + I ++ +D L +++ + +S ++ K + Q + CR+ A Sbjct: 200 SHWKLRQAISYIHENLDQDLTLVDISTAVGMSMYYFSRQFKQSTGFAPHQYVMNCRIERA 259 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 L K I Q+ G+ S S+F +VF+ G+TP Y Q + Sbjct: 260 KKLLGSTNKTIEQICTQVGFQSQSHFTNVFRKLMGITPRVYREQVK 305 >UniRef50_C9KN89 Transcriptional regulator, AraC family n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN89_9FIRM Length = 286 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 8/248 (3%) Query: 3 ICSDQPCI-VLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 + + CI + + G E + + + + + V + ++ ++ Sbjct: 34 MHQHENCIELNFMISGNGTHIVGNEICHTQPGDIIIYDSK-----VMHDESLMLDSLTDA 88 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 + P + + ++ + A+ A Sbjct: 89 CCIAVTGLKRPGARPNALLPPGLHPCIPCQSIAQELCTLYHIIERSLAKPH-GYPAANAA 147 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 T++ ++ N + + V IE + ++ +A S + Sbjct: 148 AQTIVHLVWQQISERAVRAAGQENMLMERVRSYIEQHYAEALSIRDIAQEFHASRDYIAH 207 Query: 182 KLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K N + Q + R+ A L+ ++++V+ G++ +YF VF+ GM P Sbjct: 208 AFKHTTNYAPLQYLRRWRIGKAQTLLIDTDLSLTEVASRVGFDDPNYFSRVFRQVIGMPP 267 Query: 241 LHYVSQHR 248 + R Sbjct: 268 GTFRRTWR 275 >UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=Cyanobacteria RepID=B0C3V1_ACAM1 Length = 283 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 72/218 (33%), Gaps = 7/218 (3%) Query: 31 KANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTL 90 + + + + + + + +L+ + ++ + P + Sbjct: 67 RKGDILITPAKIPLFVRWEGEENCL---QIQLTTQFLQSVARETLEQNSDLIELIPTFHV 123 Query: 91 PCLTPDVFRVAA--QHSMMPAETESEKERTRALL-FTVLSRFLDSKKFVSLMMYMLRNCV 147 + + + + + +L +L + + + L Sbjct: 124 RDAQMEAIAMMLHTEFQQDTSGNRLYLDSLANILAVNLLRHHATKRPQLPIYEGGLPPRQ 183 Query: 148 SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNEL 206 V I++ + + L+ +A L +SP + K S S Q + R+ +A L Sbjct: 184 LQQVLDYIDAHLDCEIKLADLAQILDMSPFHFSRLFKLSTGKSPHQYLIQQRIEHAKQLL 243 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + I ++ CG+NS S+ F+ G+TP Y Sbjct: 244 KQTDRRIIDIAYECGFNSHSHLSKQFRQMMGVTPKVYR 281 >UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicutes RepID=Q2BDI9_9BACI Length = 525 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 5/185 (2%) Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 ++ ++ + +RS + L + + ++ Sbjct: 344 FAGFMGSHAEEAQETADIRRSLQELFVLVSRMLYELGIDYRQVPELSDYHDSAVLFEQGK 403 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 +L + V + + IE+ + L A + LSP K Sbjct: 404 NHLLRIV----RHVQAWRNSHAKDMLYKAKEYIEAHYAEALTLESAAEYVDLSPFYFSKL 459 Query: 183 LK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 K ++ +T R+R A + L ++ ++ S GY +YF VFK G++P Sbjct: 460 FKDRFGMTFIDFVTDVRIRKAKHFLKEGSLSLKEICYSIGYKDPNYFSRVFKKHTGLSPT 519 Query: 242 HYVSQ 246 Y + Sbjct: 520 EYRKE 524 >UniRef50_C3QPX4 Transcriptional regulator n=9 Tax=Bacteroides RepID=C3QPX4_9BACE Length = 325 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 86/260 (33%), Gaps = 18/260 (6%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLN------------- 51 + I+ + + + + G IS + L E S + Sbjct: 66 HSEYEIIYVEKGEGD-CLVGDSIISYSKGDLILFGSELPHSMQSPPDGGEESDNEEKSEL 124 Query: 52 --NTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPA 109 + D + + ++ + + + + I + + ++ Q Sbjct: 125 KVRGVNIQFEKDFMHYSISQYSQFIPIRNLLEDACRGIKFTITRSGKIIKLLKQIPSAKG 184 Query: 110 ETESEKERTRALLFTV-LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMV 168 + + + R + + ++RN + V + + L + Sbjct: 185 VDQIILLLSLLQMMATSNHRKYLTTSHYTPSPSIMRNERMEKVIAYLNKHYTESIGLDEI 244 Query: 169 ASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 AS ++P+ + K ++ + + R+ YA L NISQ+S +CG+ S + Sbjct: 245 ASYTAMNPTAFCRYFKENTGKTFKEYVLDMRIGYACKLLNSSMMNISQISATCGFESPVH 304 Query: 228 FISVFKDFYGMTPLHYVSQH 247 F +FK GMTP Y Q Sbjct: 305 FNRIFKRVTGMTPTFYREQM 324 >UniRef50_UPI0001B9ECE6 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ECE6 Length = 519 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 1/103 (0%) Query: 143 LRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRY 201 I + + +L VA + ++P+ + K E +Y + +T ++R Sbjct: 412 STTSPVQRAISFIHEHLGQSLSLQQVAKHVHMNPNYFSEMFKKETGQNYIEFVTQAKLRK 471 Query: 202 AVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 A++ L IS+++ GY YF +FK + G+TP Y Sbjct: 472 AMHLLRETPAKISEIANEIGYEDIKYFNRLFKKWTGLTPSEYR 514 >UniRef50_UPI0001C3592F AraC-like transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3592F Length = 284 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 7/243 (2%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 I L+ + ++ + + + N + + + E + ID N TLV I + YL Sbjct: 39 EIFLVMKGEIDFYLGERHFSIGEKNFIIVNSNEVHSIDAPLPNRTLVLQIPVQTFEVYL- 97 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 ++ + +RS L L +++R + A + + +L+ Sbjct: 98 ---QEQPYLSFSRRSGEQNEKLMGLVMEMYRTYENKA--YAWELKVSGLFEFVKYLLLTE 152 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-N 187 F D + ++ + + + +++ + +L VA SP+ L + K N Sbjct: 153 FKDQAQAPDIIRQKIHLEKLSEITEYMKNHYDEPLSLEKVADRFGFSPTYLSRIFKRYAN 212 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 SY + R+ YAV E++ + ++ + G+ + F F YG P Y + Sbjct: 213 ISYRDYLQDLRVEYAVKEMVHTDHELGDIAVNHGFADSRAFAKAFAKRYGCLPSEYRKKL 272 Query: 248 RER 250 +E Sbjct: 273 KEE 275 >UniRef50_C6CZ56 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ56_PAESJ Length = 519 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 10/210 (4%) Query: 49 SLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMP 108 ++ L A + +D++ R L V Q+ L + + + ++ + Sbjct: 309 NVEQMLAAILDYDLVSIDDRLLKLFDKNESVSQKQYAYDLIIRVTSKLHADLLQRNENLY 368 Query: 109 AETESEK---------ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDI 159 + + E +L + RF + + + + + + D++ ++ + Sbjct: 369 ELLKWDAQKAAVLFQFETIDDILSWLRRRFFELSELLYVKRQKQKRKLFDNIMAFVDERL 428 Query: 160 HKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQ 218 + L VA+ +P+ L K E T +S + RM L + ++++ Sbjct: 429 EQKITLKEVAAHFDFTPNYLGTLFKEETGTLFSDWLNERRMDRVRELLADPCLKVYEIAE 488 Query: 219 SCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 GY + YF FK F GMTP Y +H+ Sbjct: 489 RVGYKNIIYFNRQFKQFTGMTPGEYRKKHK 518 >UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ07_CALS8 Length = 283 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 88/251 (35%), Gaps = 7/251 (2%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 M ++ +K E I L+A + ++ N + Sbjct: 26 MDYNVHDSYELIFVKKGNIEFWVEDEKIELRAGDLLIIKPHTRHKFEVVGNFKAEFIVMG 85 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA 120 +K + + L +I + S I + P + + + + + + KE + Sbjct: 86 FYLKPESKSKIEALKEIYGFLESLENISS-PFYFIHIRKRSNVFFCLESILQEAKENKKG 144 Query: 121 LLF-----TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 LL + + + + ++ + I+ + +D + +A L +S Sbjct: 145 LLLYIKSIELFIYITREMNNLEIKKGFDYSKIAKFIKDYIDQNYMEDIKIGDIAKKLFMS 204 Query: 176 PSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 S + + K + + + R+ A L + IS+++ CG++S F +FK Sbjct: 205 ESSISRLFKSQFGILPKEYLLSKRIEKAKEYLSVSNLKISEIAIMCGFSSLQRFNDIFKK 264 Query: 235 FYGMTPLHYVS 245 + G +P HY Sbjct: 265 YTGCSPTHYRK 275 >UniRef50_UPI0001C36481 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36481 Length = 293 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 89/255 (34%), Gaps = 11/255 (4%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDV---SSLNNTLVAHISHDI 62 ++ I + + + G + + + ++ + ++ + Sbjct: 33 NEYQIYYILDGE-RFFYQGSKSYRMDRGTLTFIDKRQIPFTNVIGGKYHERILIEVDEKW 91 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 + + + DL L L ++ +M + + LL Sbjct: 92 LVSMGKAMELDLIGFFA-NYHGVYRLEGKHLAAVEKKLKKMEEVMGQKRAFASAEVKNLL 150 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCV-----SDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 +++ L +M + + + Q I + + L +A + S Sbjct: 151 ISIIISMLYGAGTRCAEYHMPNGKMLRYAKAREIIQYIMEHYSEVYGLEDLAGIFYMDKS 210 Query: 178 LLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 L + K N + ++ I R+ +A + L+ + ++ ++SQ GY SYF VFK + Sbjct: 211 YLSRIFKEVTNFTVNEFINCQRIGHARDMLLDESLSMEEISQKLGYERLSYFDRVFKKYV 270 Query: 237 GMTPLHYVSQHRERT 251 GM+PL Y R++ Sbjct: 271 GMSPLQYRKSKRKKN 285 >UniRef50_UPI0001B9ED63 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ED63 Length = 287 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 9/245 (3%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLN---NTLVAHISHDIIK 64 I L + + ++ S++A + L+N + + +V + S + Sbjct: 40 YEIYYLVSGERHYFIK-EKLYSIRAGDLILINKFDVHKTSGHGDPEHERIVINFSDSFLG 98 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 L L + Q LT+P + + + + S + + LL Sbjct: 99 KGHPLLASGLLGMFN-QDRPLLRLTVPEQAIIMQILNKMADEIRERSASYEHMLQVLLTE 157 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSV---YQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 +L + SL + N + + + I L ++ +SP L + Sbjct: 158 LLIKTYRLTHSASLPANVSMNPLHQKITDVVKFIHVHYADKITLQGLSETFYISPFYLSR 217 Query: 182 KLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K + + R+R A L I +++S G+ S ++F FK MT Sbjct: 218 IFKEITGFTIINYLNLTRIREAQRLLTDTDLKIVDIAESIGFESLTHFDRTFKKIMNMTA 277 Query: 241 LHYVS 245 Y Sbjct: 278 SQYRK 282 >UniRef50_C5ET70 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET70_9FIRM Length = 273 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 81/251 (32%), Gaps = 10/251 (3%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 + + E + L + L +S + Sbjct: 23 HYHEYFELYYLESGKRYHIADDTLYCLNSGEFILFPPYVMHHSYGDSG------VSFKRL 76 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 Y + + + + A + ++ AL F Sbjct: 77 VLYFTKEMIAVPGVTDVLDQHAWVYKSDEKNETHALLRALLKE---QEFNDNYSEEALYF 133 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 + + + + + S+ + + L+ +A LSP L ++ Sbjct: 134 ILNQILILLLRNSTETAKPEKQSRITSIIHYLHENYTYPITLNELAEQFYLSPYYLCREF 193 Query: 184 KS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K N++ Q I + R+ +A M K+++++S+ G+++ ++F V++ G++P Sbjct: 194 KKYTNSTIVQYINSLRVGHAQRLFMETDKSVTEISKIVGFSNVTHFNRVYRSVTGLSPSK 253 Query: 243 YVSQHRERTVA 253 Q +ER+ A Sbjct: 254 SRKQAKERSAA 264 >UniRef50_Q2BC36 Two-component response regulator n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BC36_9BACI Length = 515 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 14/209 (6%) Query: 52 NTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAET 111 + + L +L++ S + S P L +F + M E Sbjct: 305 ERFTEEFKNGNVHSALAYLSEHTSSL-AKDSSIAPFEFKAFLGNAIFNITVILGNMTVEA 363 Query: 112 ESEKERTRALL------------FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDI 159 ++ +++ VL+RF+ + + + + ++ Sbjct: 364 DAIQKKKYEYFKAVEDAGTASEALDVLARFIKEVDELLIPADNQNGITIKKIIEYMKEHY 423 Query: 160 HKDWNLSMVASCLCLSPSLLKKKLKSENT-SYSQIITTCRMRYAVNELMMDGKNISQVSQ 218 + L+ A +PS L + N S+ + + R+ A L+ IS++S Sbjct: 424 TEPITLTEAARHFHFNPSYLSSYFSAHNEGSFIEQLNKIRIEEASKLLLEGEATISEISG 483 Query: 219 SCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 G++ SYF VFK G++P Y ++ Sbjct: 484 LVGFSDHSYFCRVFKKRTGLSPSQYKRKY 512 >UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=Verrucomicrobia RepID=B9XAQ1_9BACT Length = 326 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 5/144 (3%) Query: 108 PAETESEKERTRALLFTVLSRFLDSKKFVS----LMMYMLRNCVSDSVYQIIESDIHKDW 163 +T+ R + ++L F VS + V + IE + +D Sbjct: 180 YFDTKVVSTRQHEAIVSLLEIFAQHISLVSNWVLVQERNAEPPVIARAKRYIEDNQAEDL 239 Query: 164 NLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGY 222 LS VA + S K K +++ ++ R+ A N L+ +S+V+ G+ Sbjct: 240 TLSEVAKAVNTSTFYFCKMFKKATGLHFTEYVSRVRIEKAKNLLLNPNLRVSEVAFEVGF 299 Query: 223 NSTSYFISVFKDFYGMTPLHYVSQ 246 S ++F VFK G +P Y Q Sbjct: 300 QSLTHFNRVFKKIVGQSPTEYREQ 323 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 4/241 (1%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDY 66 Q ++ LT + I + E I+ + L + I + + + ++ Sbjct: 38 QSVLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITMEETHEQLNYNLIELDSAS 97 Query: 67 LR-FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK---ERTRALL 122 ++ N L + + T T L P VA +++ + +S+K ++ L+ Sbjct: 98 IKNAYNFFLYEHADFSDPLTKPTTKHLLAPIETGVARVFNLLHSSNKSQKLSQDKKEYLI 157 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 +LS F+ + +L + +N +++++Y II SDI + W L ++ L +S S LK+K Sbjct: 158 RFLLSEFIYEPEAFALFRELSQNTLAENIYNIIISDISRKWALKDISDSLYMSCSTLKRK 217 Query: 183 LKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 LK E+TS+S++ RM A L NI++V+ CGY+S SYF VFK + TP Sbjct: 218 LKQEHTSFSEVYLNARMNKATKLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPSE 277 Query: 243 Y 243 + Sbjct: 278 F 278 >UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus RepID=C6JCU7_9FIRM Length = 282 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 80/245 (32%), Gaps = 7/245 (2%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDY 66 + I+ + E + + + ++ + N + ++ + + Sbjct: 40 EYEIIRILEGSLTVTL-DEKSFTAVKNDVIFVHSGILHSGIPHDCVYQCIVFDMNTFLKN 98 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 + + +I + P + + ++ M + + + Sbjct: 99 NPVCGEYIQKILHQETMLFPHFSDEHPQ-ILNCISVLFDAMYEKDTGYELTVFGQFYHFF 157 Query: 127 SRFLDSKKFVSLMMYMLRNCVS----DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 + F+ R+ V + IE + L +++ + +SP + Sbjct: 158 GLIFSNHYFIENPTRTRRDYKRILQLKQVLEFIEKNYANPITLQELSASVSMSPKYFCRF 217 Query: 183 LKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 + + + R+ A +L +I++++ G+N SYFI FK + GMTP Sbjct: 218 FSEMTHQTPVDYLNRQRIEEACLQLAATDDSITEIAYRNGFNDLSYFIRTFKKYKGMTPG 277 Query: 242 HYVSQ 246 Y + Sbjct: 278 KYKRR 282 >UniRef50_C6J070 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J070_9BACL Length = 523 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 1/138 (0%) Query: 110 ETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVA 169 E S E T +L L R + R+ V + ++ ++ A Sbjct: 382 EDLSACEDTASLRERALHRLGGWIDGLRERKERSRSHVLQRALLFVNQRFKEEISMEQTA 441 Query: 170 SCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYF 228 + LSP K K ++S +T R+ A + ++ ++ GY +YF Sbjct: 442 EYVNLSPYYFSKLFKLQTGENFSDYLTRLRIEEAKRLIAGRSLSLKEICYEVGYKDPNYF 501 Query: 229 ISVFKDFYGMTPLHYVSQ 246 VFK G+TP Y Q Sbjct: 502 SRVFKKSVGITPSEYRQQ 519 Score = 41.0 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 14/123 (11%) Query: 81 QRSATPILTLPCLTPDVFRVAAQHSMMP-AETESEKERTRALLFTVLSRFLDSKKFVSLM 139 + + + L R + SM AE + + LF + + Sbjct: 412 KERSRSHVLQRALLFVNQRFKEEISMEQTAEYVNLSPYYFSKLFKL--------QTGENF 463 Query: 140 MYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCL-SPSLLKKKLKSE-NTSYSQIITTC 197 L + ++I + +L + + P+ + K + S+ Sbjct: 464 SDYLTRLRIEEAKRLIA---GRSLSLKEICYEVGYKDPNYFSRVFKKSVGITPSEYRQQI 520 Query: 198 RMR 200 + Sbjct: 521 EIE 523 >UniRef50_C6IZN9 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZN9_9BACL Length = 301 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 89/257 (34%), Gaps = 14/257 (5%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNN---TLVAHISHD 61 D+ E + +V + + A ++ + + + Sbjct: 41 HDEAEFFYCLEGETLFQV-DTDYFPVGAGEAVFIDGGDIHAAHAHGDQGCAFFSLVFDTQ 99 Query: 62 II-KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDV---FRVAAQHSMMPAETESEKER 117 ++ + + ++L +++ P D+ + A E+ + Sbjct: 100 LLASAHYDAVQENLVLPLQERKATFPRHIRRETAADLSLLEHIVALMRSCSTESPGYEGA 159 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYML-----RNCVSDSVYQIIESDIHKDWNLSMVASCL 172 + LF +L+ + + V+ + +V Q I+ + L+ +A+ + Sbjct: 160 VKGHLFLMLAEIAATGRAVNRSHSSSRSESSKIDRLKTVIQHIQHNYSHPIRLAELAALI 219 Query: 173 CLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 +S + KS + I + R+R A L + IS ++ G+++ SYFI V Sbjct: 220 PMSEGQFCRFFKSMTRQTPMDYINSYRIRQAAELLREPERKISDIALEVGFDNISYFIRV 279 Query: 232 FKDFYGMTPLHYVSQHR 248 F+ +P + + + Sbjct: 280 FRKAMNCSPSEFRKRLQ 296 >UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SQN1_9FIRM Length = 294 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 88/256 (34%), Gaps = 16/256 (6%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII--DVSSLNNTLVAHISHDI 62 + I+ + + + V+ + + + +L + I S D+ Sbjct: 41 HEFMEIIYIKKGKGNVTVDFTTHYVEEGDIIIILPGHIHGISQHEGYSMEYENILFSVDM 100 Query: 63 IKD----------YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETE 112 + +L L D+ ++ + P L+ + RV S P Sbjct: 101 FRSKNHDSLDSEFFLPLLAGDVDIKSIYDKDDPLY---PQLSSCLNRVDKLCSETPKGYH 157 Query: 113 SEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 + F VL + + + I+ + + +++ +AS Sbjct: 158 LALKGCYFEFFYVLFTNSTVRDEADRKNRSRDLERTKLILSYIDENYKEAISITDIASYC 217 Query: 173 CLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 S S + K+ S+ + R+ A L + ++ V+++CG+ + SYF + Sbjct: 218 GFSESHFMRFFKNTMGVSFVSYLNDFRLNVAARLLSTNDDSVLSVAENCGFFNLSYFNRM 277 Query: 232 FKDFYGMTPLHYVSQH 247 FK YG+TP Y H Sbjct: 278 FKKKYGVTPSRYRETH 293 >UniRef50_Q1VVA7 AraC-type DNA-binding domain-containing protein n=2 Tax=Flavobacteriaceae RepID=Q1VVA7_9FLAO Length = 306 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 86/252 (34%), Gaps = 13/252 (5%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIID------VSSLNNTLVAHISHD 61 P I + I + K +L + +I + S + I Sbjct: 52 PIIASMISGRKIIHLKNKATFDFLPGESVVLPAKKKMIIDFPDATLDSPTRCMALGIDSQ 111 Query: 62 IIKDYLRFLN---KDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERT 118 I++ + + + L L T + + +S+ Sbjct: 112 KIQETIDVYQNATEIEESFTLGSNLNLSPLHLNNNTQVQHLLERLLQTFSSGHKSKDALL 171 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLR---NCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 ++ ++ R L + +L+ N V + I D + +A C+S Sbjct: 172 DVMIKELILRLLQTNARGALLDENSYLFDNHRMAFVLKYIREYYKDDITVEDLADKACMS 231 Query: 176 PSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 S K K+ + + + + R++ A + +S+++ S G+NS+SYF++ FK Sbjct: 232 KSHFYKSFKNTLGETPMEYLNSERLKQAKKLIRTTSSKLSEIAFSTGFNSSSYFVTQFKK 291 Query: 235 FYGMTPLHYVSQ 246 GMTP + Sbjct: 292 QEGMTPSQFRKS 303 >UniRef50_UPI0001C35ADD AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35ADD Length = 304 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 3/242 (1%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 I L + + +NGK+ + + + + + ++ + I + Sbjct: 39 EIDYLLDCEADFYINGKKKQVAAGSITLINSGDIHALEPREVPVDTEDKIHGISLFISYE 98 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETE--SEKERTRALLFTVL 126 FL K +I +VF + + P E +K L +L Sbjct: 99 FLKKICPEIDQITFELEGQEERLKELKEVFNSLIRLELAPPEEYGYLKKNAMLHSLMYLL 158 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS- 185 + + S + V +E + + L VA +S L + LK Sbjct: 159 LTYFKEPRNQSSVKSQKYIDRLRVVLDYVEENYREPLTLQGVADHFSVSMEYLARILKKY 218 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 ++ + R+ A +L+ ++ +++ G++ T I+VF+D YGMTP Y Sbjct: 219 TGNTFKTHLNQVRVSKAFRDLLETDYSVLEIAMRNGFSDTRSLINVFRDTYGMTPSQYRK 278 Query: 246 QH 247 ++ Sbjct: 279 KN 280 >UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVY3_9CLOT Length = 529 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%) Query: 138 LMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITT 196 ++ + + I + KD +L VA + +SP K K E ++++ +T Sbjct: 415 VIKNQEPDGIITRAQDYIRQNFRKDISLEEVARTVGISPYYFSKLFKEEAGMNFTEYLTG 474 Query: 197 CRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 R+ A L +I QV GY + +YF +FK + G+TP + Sbjct: 475 IRIETAKRLLSERELSIKQVCVDSGYANPNYFSRIFKKWVGITPTEFR 522 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 10/189 (5%) Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 + + L P ++F + + + E+ER Sbjct: 80 VVIIISAYPDFDYAQKAISLGVLNYLLKPVKKSELFEAVER--AIHVSEQKERER----- 132 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 V+ + +D K +L + Q I+ + D +L VA + L+PS Sbjct: 133 --VMKQLIDDKLINALDRHPQTREPIREAIQFIDQRLKDDISLKDVAEHVHLNPSYFSTL 190 Query: 183 LKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 K + ++S+ +T RM+ A LM ++++++ CGY + YFI +FK+ G TP Sbjct: 191 FKEQMQLTFSEYLTRRRMQRAKELLMTTDMTVAEIAEECGYRTAKYFIHLFKEMEGKTPS 250 Query: 242 HYVSQHRER 250 Y + + Sbjct: 251 SYRKSQKGK 259 >UniRef50_C0X5H9 AraC family transcriptional regulator n=22 Tax=Enterococcus faecalis RepID=C0X5H9_ENTFA Length = 272 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 87/244 (35%), Gaps = 6/244 (2%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 + I +L E + V G++ A + L N + T + I Sbjct: 31 HHEFLEISILLEGESEYIVQGQQYH-ATAGTVFLFNPRTEHGEQQKAG-TYSHQLHIGIS 88 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 YL L +++ + + H + + + + L++ Sbjct: 89 NLYLEGLARNVFPNKSALLDLSHLHGAFLEKAWQIVHELNHQEVESALQIKALVIELLVY 148 Query: 124 TVLSRFLDSKKFVS---LMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 + S +D + + + + + +E+ ++ L +A L ++P+ L Sbjct: 149 ILRSLAVDQENKIETRLSKTEKRKRNLVNHTIYYLETHHDEEITLEQLAEMLYVTPTYLS 208 Query: 181 KKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 K K+ + R+ +A L D ++ +V+++ GY +F +FK +YG + Sbjct: 209 KTFKAATGVGPINYLIQIRLNHAKELLKNDSLSVKEVAKTVGYEDAYHFSKLFKKYYGKS 268 Query: 240 PLHY 243 P + Sbjct: 269 PSQF 272 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 1/148 (0%) Query: 102 AQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHK 161 ++ + A E ++ T L + + I + Sbjct: 390 LENLYIDAHVEVQRYATFRELSGWARSVFHQIMDRISARRPQYGEAVERACEYITLHYAE 449 Query: 162 DWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSC 220 D L +A + LS + + + K E +Y++ + RM A L ++ + Sbjct: 450 DLMLQDIADHVHLSRTYISELFKKETGMNYNEYLMQVRMEKAKELLKRQTLKVADAAALV 509 Query: 221 GYNSTSYFISVFKDFYGMTPLHYVSQHR 248 GY++TSYFI +FK++ G++P Y+ Q R Sbjct: 510 GYSNTSYFIKLFKNYTGLSPSEYMEQQR 537 >UniRef50_C6CT66 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT66_PAESJ Length = 262 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 + RF+D+K + + Q +E +H+ + +A L ++ S Sbjct: 129 IERMERFVDTKLLETTEQETQYSAPVKEAIQYLEEHLHEPVTMRDIADHLHMNASYFSVL 188 Query: 183 LK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 K ++S +T R++ A L +I+++++ GY + YF+ VF+ G++P Sbjct: 189 FKEQTGLTFSDYLTRRRVQRAKELLTNTRLSINEIAEKAGYQTAKYFVKVFRSHEGVSPG 248 Query: 242 HYVSQ--HRERTV 252 Y H E T+ Sbjct: 249 QYRKNVSHAEETI 261 >UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHL9_9FIRM Length = 254 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 65/204 (31%), Gaps = 19/204 (9%) Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 I+ D L I + I + F A + + K Sbjct: 50 IVTDIKMPEVSGLELIRQIRERNQDIHIVILSGHSNFAYAQKAIELGVTRYLLKPTNPRE 109 Query: 122 LFTVLSRFLDSKKFVSLMMYMLR------------------NCVSDSVYQIIESDIHKDW 163 L VL K + + N + Q +E Sbjct: 110 LVAVLEGIEKELKQGAGDAPDKKQPPQEGEAGSGADGDGVGNLLVQKAIQYVEVHYGGRI 169 Query: 164 NLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGY 222 L ++ L LSP+ L + K + + +T RM A N L +S V++ GY Sbjct: 170 TLKDMSEELHLSPNYLCELFKRHTGKNLMEYVTEYRMMKARNYLNHVEYKVSDVAEMVGY 229 Query: 223 NSTSYFISVFKDFYGMTPLHYVSQ 246 YF S FK YGMTPL Y ++ Sbjct: 230 KEAKYFSSTFKKMYGMTPLEYRNK 253 >UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LII8_9FIRM Length = 502 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 78/203 (38%), Gaps = 7/203 (3%) Query: 53 TLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLT-PDVFRVAAQHSMMPA-E 110 H+ L++ L W+ A L C ++ A+ + + Sbjct: 300 EFNMHLYQAKGYQRYELLDEFLKNAASWRILAVESLCGLCRDTFELLEFEAKGNGISLTG 359 Query: 111 TESEKERTRALLFTVLSRFLDS----KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLS 166 T+ +E+ + +R + + ++ + ++ + I + + +L Sbjct: 360 TDILREQMEECISLEEARRIMEAFAGQCHLTELQNAPKSKNIQLAVEYINAHYAEQLSLE 419 Query: 167 MVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNST 225 VA+ + L+P + K ++ +T R+ +V L + ++Q GY + Sbjct: 420 QVAASVYLNPDYFSRAFKMETGQTFVNYLTDVRLSRSVWLLENTALRVQMIAQQVGYYNA 479 Query: 226 SYFISVFKDFYGMTPLHYVSQHR 248 SYF ++FK YGM+P Y + + Sbjct: 480 SYFSTIFKKKYGMSPYEYRRKEK 502 >UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERJ9_9FIRM Length = 294 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 90/254 (35%), Gaps = 20/254 (7%) Query: 5 SDQPCIVLLTEKDVW-------IRVNGKEPISLKANHMALLNCENNII-----DVSSLNN 52 D+ I+++ + V+ + I + + ++ ++N I + + Sbjct: 46 HDEVEIIVIKKGSGIVSVDLTTYSVSAGDIIFVLPGQLHAISQKDNEIMEYENILFKSSL 105 Query: 53 TLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETE 112 + K + L+ PV P + + + + P Sbjct: 106 LKSSGYDLCNDKFIQPLFSGSLNICPVINNQTPYY---PPVITAINEIDHLCDLRP---Y 159 Query: 113 SEKERTRALLFTVLSRFLDSKKFVSLMMYMLRN-CVSDSVYQIIESDIHKDWNLSMVASC 171 + + +A LF +L + + + ++ ++ I ++ ++ + +A+ Sbjct: 160 AYQLSIKAHLFQILYTLVSNCGQNKIKPINQKSLKKIKTILSYIANNFQENIAIEDIANY 219 Query: 172 LCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFIS 230 S S K K S+ Q + R+ A L NI ++ + G+N+ SYF Sbjct: 220 CFYSKSYFMKFFKETMGVSFIQYLNDYRLEIAAELLTTTTDNILDIAFATGFNNISYFNR 279 Query: 231 VFKDFYGMTPLHYV 244 FK YG++P Y Sbjct: 280 CFKKKYGVSPRKYR 293 >UniRef50_D1PME6 Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PME6_9FIRM Length = 323 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 92/256 (35%), Gaps = 9/256 (3%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVS---SLNNTLVAHI 58 + + A + ++ S S ++ +V + Sbjct: 64 SFHIHHKFEIYYEIAGTCRYFVEGAAYIVNAGSVVMIGENQIHKTASLGDSPSSRIVVNF 123 Query: 59 SHDIIKDYLRFLNK-DLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKER 117 S + ++ + D +R+ + + Q + ET E + Sbjct: 124 SREYLEKVAAAFPEVDFFSFLTDERNHLLSAITVKQQNHIQSILQQMLDLEGETSPEDQA 183 Query: 118 TRALLFTVLSRFLD----SKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLC 173 RA+L L L ++ + N + + + I + L+ +AS Sbjct: 184 LRAMLLATLLLELKALCVQQQCQGGEKGRVSNHIVEQIQAYIAQHYAEKLTLTGIASQFY 243 Query: 174 LSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVF 232 +SP L + K N S + I R++ A N + G++IS V+ G+ +T++F VF Sbjct: 244 ISPYYLSRLFKKSTNLSLIEYINGVRIKAAQNLIEKSGESISSVAGQTGFMTTAHFRRVF 303 Query: 233 KDFYGMTPLHYVSQHR 248 KD G++P Y Q++ Sbjct: 304 KDATGLSPQQYRQQYK 319 >UniRef50_C6D5X4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5X4_PAESJ Length = 533 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 122 LFTVLSRFLDS-KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 LF L S + + + + + ++ K +L VA+ L ++PS Sbjct: 408 LFEWFHTQLQSYIAAREEALPVSKRREVSEARKYVSMNLGKRISLEEVAAHLHMNPSYFS 467 Query: 181 KKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 + K E ++ + +T ++ A L +S++ + GY++ SYFI FK G+T Sbjct: 468 RFFKKETGLTFIEYVTDQKIERAKELLDQTNYYVSEICEMLGYDNQSYFIKTFKAQTGLT 527 Query: 240 PLHYV 244 P Y Sbjct: 528 PTEYR 532 >UniRef50_A6M2W7 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M2W7_CLOB8 Length = 283 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 98/253 (38%), Gaps = 9/253 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSS--LNNTLVAHISHDI 62 + I+ L E + +N ++ L + ++ +N V I Sbjct: 32 HEDIEIIYLVEGTLKACIN-RDTYDLTQGDILIIGGGEIHCFFKEKKFSNRAVIQFRTSI 90 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 ++L P+W +S + + + E K +A L Sbjct: 91 YDNFLSGTKDTKIIKPMWNQSIHLTMGNEIHALMERHINEIINEYSKAEEGYKLIIKARL 150 Query: 123 FTV---LSRFLDSKKFVSLMMYMLRNCV--SDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 + + L R++ + + S + + + DSV+Q ++++ + +L ++ + S Sbjct: 151 YDLAGILIRYMPKQSYSSEDLSREKERLKKMDSVFQYVDTNYQERIDLDDISKSIGFSKY 210 Query: 178 LLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 K K ++ + R++ A ++ + + I++++ +CG+NS F +FK+ Sbjct: 211 YFTKFFKENTGVTFLDYLNNYRIKKAEWRIIEEDETIAEIAYNCGFNSIKTFNRLFKNIV 270 Query: 237 GMTPLHYVSQHRE 249 G TP+ Y ++ Sbjct: 271 GCTPMKYRRDNKN 283 >UniRef50_C5RGS5 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGS5_CLOCL Length = 293 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 83/252 (32%), Gaps = 11/252 (4%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEP--ISLKANHMALLNCENNIIDVSSLN------NTLV 55 D+ I+ + + I V + LK LL+ + N Sbjct: 37 THDRVEIMYVIDGQCEIDVATDNVNNLKLKKGDFILLDAGTVHRLIVLGEKSCRMLNIEF 96 Query: 56 AHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK 115 + I I +R L + + I + P L L + + E+E + Sbjct: 97 SFIEDSDILTSIRLLIEKVKSIALLFEMRCPFLLLKDNNDIYHSLKNIVIQLGMESEENQ 156 Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 + L + +L + +S N + I + KD + ++S + ++ Sbjct: 157 FSIQLLFYELLLKISKVA--MSNENTSTSNIYINKAKHFISMNYDKDITIKDISSYVNIN 214 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 L + K + ++ +T R+ A L I + G NS YF VFK Sbjct: 215 EDYLNRIFKKHTGHTITEYVTLFRIEKAKMLLSNTDIPIIDICSYVGINSRQYFSQVFKK 274 Query: 235 FYGMTPLHYVSQ 246 G++P Y Sbjct: 275 CTGISPYKYRKS 286 >UniRef50_A9KJM4 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KJM4_CLOPH Length = 517 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 77/228 (33%), Gaps = 15/228 (6%) Query: 38 LNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQR--SATPILTLPCLTP 95 + ++ + + + + + L+ + S +L Sbjct: 290 IAHVQDVTEERKEKKQFYTEMEEKFLLNIRDGNKEALNNLVTLLDLLSNYSMLDKKNKLL 349 Query: 96 DVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSK------------KFVSLMMYML 143 ++ +A+ + +ESE LL + S K V Sbjct: 350 ELIVMASNKARRDGGSESEYTNYIELLRELDSLAEGEINSWAFRSVNYVLKSVRDNQDEN 409 Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYA 202 V + +++ +D L VA L +SP + K +Y +T R++ A Sbjct: 410 SFAAIRKVLRYVDTHYDEDITLEEVAGILNISPQYFSRIFKEKMGVTYVDYLTNIRIKKA 469 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 L+ KNI ++ GY +YF VFK G+TP +V +R Sbjct: 470 QEWLIYSDKNIQEICYMVGYKDPNYFSRVFKKTVGVTPKQFVENKGKR 517 >UniRef50_A9KLS8 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KLS8_CLOPH Length = 277 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 79/247 (31%), Gaps = 8/247 (3%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI---IDVSSLNNTLVAHISHDIIK 64 + L VN ++ + L+ + + S ++ Sbjct: 29 YEMYYLLSGTRRFFVND-TLYNVSKGELILIEEGALHRTTYISGGSHERICITFSKSFLQ 87 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVF---RVAAQHSMMPAETESEKERTRAL 121 + ++ Q + D+ + + + + Sbjct: 88 PLFQEFGEEAVLKCFSQPYVRIPQSRREYFEDLISKAHREMMYQDTYSLYLASSHVYELI 147 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 LF + + + ++ + + + + I S+ L A+ +S + K Sbjct: 148 LFILRLNSISKQDDITPYDASPDDQIMEKAAKYICSNYQSPVTLEETAAYCNMSTTYFSK 207 Query: 182 KLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K K+ + + + + R+R A L+ I++++ G+N ++YF VFK G++P Sbjct: 208 KFKAVTGFGFKEYLISIRIREASRLLLHTKLPITEIALLSGFNDSNYFGDVFKRMKGISP 267 Query: 241 LHYVSQH 247 Y Sbjct: 268 CKYRKNK 274 >UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVE2_9BACL Length = 215 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 4/181 (2%) Query: 71 NKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR---ALLFTVLS 127 + + + + T ++ R A + + + R L + Sbjct: 30 SYLQTPFEFKSFLGNAVFHVTIATLELHREAKELDGLKYAYFKAIDEARDAAGALQAFNA 89 Query: 128 RFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSEN 187 + + V+ + + + + IE + LS ++ +PS L + N Sbjct: 90 FLSEVEPLVAARVPLPSDGNMKLLLDYIEEHYGEPLTLSSLSRHFHFNPSYLSSYFSAHN 149 Query: 188 -TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 +S+ + R+ A L DG IS++ GY+ SYF VFK G++P Y Q Sbjct: 150 DEGFSEYLNRVRIAKAKELLRSDGLPISEIGSRVGYSDPSYFTKVFKKQMGLSPREYRRQ 209 Query: 247 H 247 Sbjct: 210 Q 210 >UniRef50_C6D3K3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3K3_PAESJ Length = 296 Score = 143 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 79/241 (32%), Gaps = 23/241 (9%) Query: 12 LLTEKDVWIRVNGKEPISLKANHMAL--LNCENNIIDVSSLNN--TLVAHISHDIIKDYL 67 + + G E + ++A + + ++ ++ + I +I Sbjct: 57 YTFDGEGIYE-RGTETLRIQAGQAFMTEIPGDHRYYFPPDGSHWSFIFVLIRPSLILPNW 115 Query: 68 RFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLS 127 + K L P + PI M E + + + + + Sbjct: 116 EEVKKQLGDTPFLPAGSRPI--------------RLLQSMYEEAHAGRVKEPYTASSYVY 161 Query: 128 RFLDSKKFVSLMMYMLRNCVSDSVYQ---IIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 +F+ +L V + I++ +L +A L LS L + Sbjct: 162 QFISELCRFALAPQEDAKEWPLKVKEAVSYIDAHYENMISLDQLADQLSLSKYHLLRLFT 221 Query: 185 SE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 S + + R++ A+ L ++ ++++ GY+ SYFI F+ G TP + Sbjct: 222 RTVGMSPNDYLNQVRIKEAIRLLKESDWSVERIAEQVGYSGGSYFIKWFRKITGETPGSF 281 Query: 244 V 244 Sbjct: 282 R 282 >UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Streptococcus infantarius subsp. infantarius ATCC BAA-102 RepID=B1SDU2_9STRE Length = 288 Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 7/245 (2%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 D + + + ++G LK M +L + + Sbjct: 50 DNYVLHFIVDGKGKFTIDGITT-QLKTGDMFILPKGKVAFYQADGEHPWTYLW-----VG 103 Query: 66 YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTV 125 + +++ TL D Q + +E + T L + Sbjct: 104 FSGSKAENILSKTQLLDHYFCHSTLESKVLDQIVKLTQFRDQKLDDVTELQLTAELYKLL 163 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 + +L V +II + +S +A L L+ S L K K Sbjct: 164 AFLMKEFPSKAMSDSSILIQNYIKQVKKIIHTQYGNPLKISEIAKKLNLNRSYLYKIFKE 223 Query: 186 E-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 E + S + RM + + L +IS+++ + G+ F FK +G +P HY Sbjct: 224 ETDYSLKDYLIQIRMEKSADLLTRTTFHISEIANAVGFPDALAFSKAFKKHFGQSPSHYR 283 Query: 245 SQHRE 249 ++ Sbjct: 284 KALKK 288 >UniRef50_UPI0001788F00 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F00 Length = 533 Score = 143 bits (360), Expect = 8e-33, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 80/243 (32%), Gaps = 15/243 (6%) Query: 26 EPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIP--VWQRS 83 + I ++ + + + L L + I + + L + + + ++ Sbjct: 286 KYIYDESGIVIHEEAAVHDLQYIGLEERLYQQLLEQIEELHFEKLEETIRSLFESFQEKL 345 Query: 84 ATPILTLPCLTPDVFRVAAQHSMM------------PAETESEKERTRALLFTVLSRFLD 131 P + V V S M E + L ++ Sbjct: 346 YAPEAVKTAINQCVLGVVRVLSSMDGDQSRLSSLEPMTEWHDRNLSLQGLKRLFTDFAIE 405 Query: 132 SKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSY 190 S ++ + + IE+ H++ +L +A ++P L + K + Sbjct: 406 SANYIGQLRKEQHKGGIQKIRAYIEAHYHENISLKGIAGKFYMNPVYLGQLFKKAYGMYF 465 Query: 191 SQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 + + R+ A L I +V++ G+ + YF++ F+ MTP Y ++ + Sbjct: 466 NDFLLQLRVNEAKRLLRQTDLRIYEVAERVGFGNPDYFVTQFEKIERMTPSEYRNRLMKE 525 Query: 251 TVA 253 + Sbjct: 526 AAS 528 >UniRef50_C6CTP9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTP9_PAESJ Length = 537 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 1/140 (0%) Query: 107 MPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLS 166 + + + + L L L + ++ + + + + +E + +++ L Sbjct: 397 LYVLLDEQGRLSLELCRRELLNGLTAFAALTGAGGNKEHSIMRDIARYMEQNYNREVTLQ 456 Query: 167 MVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNST 225 ++ LS + ++ K E + + R+ A L I+Q+++ GY+ Sbjct: 457 DISERFYLSREYISRRFKQEMGENVFDYLGRIRVEKAKLLLQNPNLKIAQIAEMVGYDDD 516 Query: 226 SYFISVFKDFYGMTPLHYVS 245 YF VFK F G +P Y Sbjct: 517 KYFSKVFKKFEGQSPNQYRK 536 >UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABU8_9CLOT Length = 412 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 2/208 (0%) Query: 41 ENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRV 100 + ++ V + + +I +D+I L +++ I +L+ + Sbjct: 204 KELLLKVRNGDIIGAKNILNDMIGRILFASGGNINIIKSKTLELCTLLSRASIDGGADSN 263 Query: 101 AAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNC-VSDSVYQIIESDI 159 + + L + LDS +N + I Sbjct: 264 TIIDLNSKFLYKISNIKNIEDLSYWVIHMLDSFTQNVFNFNESKNPVLIQKCISYINEHY 323 Query: 160 HKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQ 218 ++D NL +A+ + L+PS K E S+S + R+ + L +I +++ Sbjct: 324 NEDINLETIANIVHLNPSYFSSIFKKEVGVSFSNYLNKIRIEQSKLLLKNTDSSIVEIAL 383 Query: 219 SCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 G+ SYF VFK+ MTP Y Sbjct: 384 EVGFEDQSYFSKVFKNLTKMTPKQYRQN 411 >UniRef50_Q5WCV1 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCV1_BACSK Length = 293 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 81/256 (31%), Gaps = 20/256 (7%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSS---LNNTLVAHIS 59 Q C +L+ V ++ +K + + H Sbjct: 34 YHWHQGCELLIVFDGAGSVVVNQQMSPIKKGMLFFFQPFQLHHVAPASAAPYERATLHFD 93 Query: 60 H----------DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPA 109 + + R L +Q P S A A Sbjct: 94 PLHAEKRLTAYPAMAQFFRQLKNGYNQDPFIDFSEDYFYIRSLCDMHDKMAEAASINERA 153 Query: 110 ETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVA 169 E E LL +LS K + ++ + IE + + +NLS++A Sbjct: 154 ERE------ELLLIQLLSYMQHQLKGRPPTKKLRHIHYAERIMGWIEDHLTEPFNLSLLA 207 Query: 170 SCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYF 228 L LS S + K + +S + +T RM+ A + L I ++SQ G + SYF Sbjct: 208 QDLYLSKSYVSKVFRRETGSSITDYLTARRMKEACHLLQTTSLPIDEISQRIGLTNVSYF 267 Query: 229 ISVFKDFYGMTPLHYV 244 I +FK TP Y Sbjct: 268 IQMFKRKTNATPHQYR 283 >UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AA81_9PORP Length = 287 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 87/243 (35%), Gaps = 12/243 (4%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLV-AHISHDIIKD 65 + I + + + + + + + M + + + + S + TL+ ++ Sbjct: 47 RIEINYVKKGNCILHLENESISFSENEMMVICSNVEHTFEAGSEDTTLMQLEFLPEVFSR 106 Query: 66 YLRFLN---KDLSQIPVWQRSATPILTLPC--LTPDVFRVAAQHSMMPAETESEKERTRA 120 + + KDL+ + ++ I + + V R+ + + + A Sbjct: 107 FNPDGHGQMKDLAPVTIFSEENRLIKIVNNVRIMRAVQRIVNEMNQKSKYYQYLVVMYYA 166 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 L ++ R+LD + N I + D +S VAS + L+ Sbjct: 167 ELLILIYRYLDEAYL-----PICTNDSLKKAISYIRLNYQSDITISDVASQTGVGERYLR 221 Query: 181 KKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 K N S + R+ A+ L ++ +V +CG+ S YF +FK G++ Sbjct: 222 KLFSQYLNLSPLDYLNQIRINKAIELLRNTEMSVKEVCFACGFQSPQYFSRIFKQQMGIS 281 Query: 240 PLH 242 P Sbjct: 282 PRE 284 >UniRef50_A7B0D2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0D2_RUMGN Length = 270 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 15/249 (6%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSS---LNNTLVAHISHD 61 D + L E + + G E L AN L +V + S D Sbjct: 33 HDFFELYYLLEGERMHMIEG-EIYHLTANDFVLFPPHIMHHSYGEKDMPFKRIVLYFSPD 91 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 +I + ++ P L L + K + Sbjct: 92 LIANDTICQLLSEKELLFVNEGYIPNQILSLLLSLTHEIDV----------PGKYHDAYI 141 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 + L+ + + + S I + +D +++ +A L +SP L Sbjct: 142 CNQLNGLLLNMLRLDFEAVKSIPKTRSAKAVDYIHNHYMEDISVNQLAEILYVSPYHLCH 201 Query: 182 KLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 + K + + Q + T R+ +A ++ NI+Q+S+ G+++ ++F FK G+ P Sbjct: 202 EFKNATGKTIIQYLNTTRILHAQRLMLETDYNITQISREVGFSNLTHFNRTFKKITGVAP 261 Query: 241 LHYVSQHRE 249 +++ Sbjct: 262 REKKKLYQK 270 >UniRef50_A5I5L7 AraC-family transcriptional regulator n=10 Tax=Clostridium RepID=A5I5L7_CLOBH Length = 688 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 90/246 (36%), Gaps = 7/246 (2%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIID-VSSLNNTLVAHISHDIIKDY 66 ++ + E + I + + K + E + I +++ N L+ I Y Sbjct: 32 MEVIYVLEGSIKITIETESHRVNKQEIGIINPEEAHSIKSITNNNKVLIFQIDTSFFNKY 91 Query: 67 LRFLNKDL---SQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 N P Q+ + L+ + +A + E L Sbjct: 92 YDIENMFFYTDFSAPEAQKHEKYDVLRKYLSTLLCEIAQKGDNYEDVVEEILVDLLYHLI 151 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 + ++ L ++ D + + I S+ + ++ +A LS L ++ Sbjct: 152 NNFHYLIYDEE--ELKENEVQFERYDRIIKYIYSNYNNKISIQDIARLEFLSSHYLSNEM 209 Query: 184 K-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K S++ + R+ A+ L+ K IS++S+ G++ T YF FK Y TP+ Sbjct: 210 KNKVGYSFNDFVNLTRVEEAIKLLLDTDKTISEISEELGFSHTRYFNKHFKKHYKCTPMQ 269 Query: 243 YVSQHR 248 Y +++ Sbjct: 270 YRKKYK 275 >UniRef50_UPI0001C35C03 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C03 Length = 301 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 12/176 (6%) Query: 83 SATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR------ALLFTVLSR-----FLD 131 + P+L + +F++ ++ + ++ + A T+L R FLD Sbjct: 121 FSPPVLLKQRVIFALFQIMRNFEVLISGNFKKEANLQISSLQKAETLTLLKRSLYAFFLD 180 Query: 132 SKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSY 190 K ++ + + +E+ + NL VA +PS K+ +++ Sbjct: 181 LGKELNCQKEGNGRDIMTDCGEYLENHYMDEINLESVAEKYHFNPSYFSTLFKNTYKSTF 240 Query: 191 SQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 S+ + RM A L+ + ++ GY +YF+ FK +Y MTP Y Sbjct: 241 SEYLIRIRMEKARELLLTTESRVRDIAVLTGYRDANYFVRAFKRYYEMTPEEYRKM 296 >UniRef50_C6D5P5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5P5_PAESJ Length = 276 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 81/249 (32%), Gaps = 13/249 (5%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 I L + + + + + +++ ++ I + Sbjct: 31 HSTYEIFCLMSGKREFFIKDR-TLVIHEGDIVIISPNILHRTTNTETPEHERLI----VN 85 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 + + + + S L + C D + M AE +K T Sbjct: 86 IHEKHMAAGSYVDVLHPLSEREYLIVKCTLQDRLAIETMLQTMIAEMSEKKPGFELYALT 145 Query: 125 VLS-------RFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 + R S +L + V + + S + +L ++A +SP Sbjct: 146 LALQLLLICCRHAKSSSMETLESPSPMHERISEVVRYMNSHYMNELSLHLLAEKFYVSPY 205 Query: 178 LLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 L + K ++ + + + R++ A L ++ +++ G+ S ++F VFK Sbjct: 206 YLSRFFKEATGFTFVEYLNSVRIKEAKKLLEQSSMKVNLIAKRVGFGSVTHFGRVFKSVT 265 Query: 237 GMTPLHYVS 245 G PLHY Sbjct: 266 GYVPLHYRK 274 >UniRef50_C1P7P5 Transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1P7P5_BACCO Length = 292 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 8/192 (4%) Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 D FL + + + A LP + + +A+ +E Sbjct: 107 EDDETQVKDFLQQQPLDLSSHRDFAAAYSKLPVFSLEKLSASAEVLGTLSEYYLSSVLNE 166 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 + + + Q I+ IH+ L VA + LSP Sbjct: 167 E-------AKPAKESTAQVKKHASSKKEIKQALQYIQKHIHQPVTLEEVAGHVYLSPYYF 219 Query: 180 KKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 K K E ++ + +M A + L D +S ++ S G+ SYF VFK +Y Sbjct: 220 SKLFKKETGETFVSFVNRQKMNLAKDMLANDDLPVSYIAHSLGFREISYFSKVFKRYYQT 279 Query: 239 TPLHYVSQHRER 250 TP Y + R++ Sbjct: 280 TPTSYRAMSRKK 291 >UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC74_9FIRM Length = 240 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 8/236 (3%) Query: 11 VLLTEKDVWIRVNGKEPIS--LKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 +++ E + IR NG + L + EN + +I D Sbjct: 4 IIIVEDEFRIR-NGLSTLINKLDMGCKVIGEAEN----GFEGLKMISDMEPEVVITDIKM 58 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 LS I + + F A Q + K + + + +L++ Sbjct: 59 PKMDGLSMIRQAKEMGASCDFVILSGYAEFEYAQQGIQLGVMDYLLKPASVSDVKELLNK 118 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSEN 187 + K+ + + + + +IE L +A ++P L K Sbjct: 119 LNEEKEITQGLDRENCSDIVREMINVIEESYGMKLQLDAIAEKFHMTPEYLGNLFAKETG 178 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 ++S + RM A L I +V+ + GY YF VFK++ G++ + Sbjct: 179 ITFSNYLRQVRMEKAKELLTGTDMKIYEVACAVGYPDQKYFSKVFKEYAGVSAKQF 234 >UniRef50_C1I9Z9 AraC family transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I9Z9_9CLOT Length = 284 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 78/253 (30%), Gaps = 18/253 (7%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLN-NTLVAHISHDI 62 D + +T V + G E +LK + + N ++ N N HI Sbjct: 37 HEDFIELSFITSGSVDYLIEG-EKYTLKKGQVLISNPGVYHQELFEANTNCRELHIGLTN 95 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKER-TRAL 121 + + +LT ++ + + ++L Sbjct: 96 LNLFSNVKKD------YIDIGNKNVLTFTKYKDEILKSCLEIVEEQKTYNQTSPFMLKSL 149 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDS--------VYQIIESDIHKDWNLSMVASCLC 173 + +L + + + + +D +L ++ + Sbjct: 150 VMKLLVLLYREINEEDTTRDSKEFSFKSREKKALVESITKYLTENYTEDISLYTLSKNMY 209 Query: 174 LSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVF 232 LSP + K K S + R+ A L +I +++ GY+ YF ++ Sbjct: 210 LSPVYISKIFKELMGDSPINYLIQIRLSKAKELLDDSKLSIKSIAKMVGYSDPYYFSKLY 269 Query: 233 KDFYGMTPLHYVS 245 K +YG++P + Sbjct: 270 KKYYGVSPNKSRN 282 >UniRef50_C0CH60 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CH60_9FIRM Length = 278 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 79/250 (31%), Gaps = 10/250 (4%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 + + + E +K + ++ + S +L ++ Sbjct: 38 THHFTELFYVVSGEGKFLFRN-ETHHIKTGDLVIIPPYLEHTEQSVKGKSLEYYVIGIDK 96 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 +L + Q R + + + R S + + E Sbjct: 97 ISFLAENGQTGIQAFCNFRDQSSVSDIFAQMLYEMRNDDYGSEIICQNLLEILIL----- 151 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 + + + + ++++ + L + S ++ + Sbjct: 152 ---RIIRSQRLIPISINSERMTKECAQIKEYLDTNYTERITLDTLTSLTHMNKYYMAHSF 208 Query: 184 KSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 S Q + R++ A L ++S ++ S G++S SYF F+ +YGMTPL Sbjct: 209 AKYAGLSPIQYLNRRRLKIACTLLRDTDHSVSDIASSTGFSSQSYFTQSFRKYYGMTPLQ 268 Query: 243 YVSQHRERTV 252 Y Q+ E +V Sbjct: 269 YRQQNAETSV 278 >UniRef50_C6CTB8 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTB8_PAESJ Length = 530 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 8/194 (4%) Query: 59 SHDIIKDYLRFLNKDLSQIPVWQRSATPIL---TLPCLTPDVFRVAAQHSMMPAETESEK 115 H + L L++ P + L + L + A + T Sbjct: 336 QHREFLAFASELFHTLAESPGARYEHVEYLYTEIIHVLRKHAAKTAFELPNWNLGTPIAS 395 Query: 116 ERTRALLFTVLSRFLDSKKFVSLMM----YMLRNCVSDSVYQIIESDIHKDWNLSMVASC 171 + ++S K +S ++ + + DSV Q + +++ +L V+ Sbjct: 396 LESFTDWRQIISVIEQQLKRLSSVLDGGAERSCDDIIDSVQQYVRQHYNEELSLQWVSDK 455 Query: 172 LCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFIS 230 + P+ K+ K SY+ +T R+ + L I+++SQ GY YF S Sbjct: 456 YFIHPNYFSKRFKQIVGISYNDYVTRVRIERSKELLKTTTLKIARISQLVGYEDQGYFCS 515 Query: 231 VFKDFYGMTPLHYV 244 VFK G++P Y Sbjct: 516 VFKKVTGVSPSAYR 529 >UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NUZ5_BACSE Length = 305 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 84/257 (32%), Gaps = 19/257 (7%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSL---NNTLVAHISHD 61 Q I+ + +K G + L S + + Sbjct: 50 HSQYEIIYV-KKSCGRCFVGDCIECFSEGDVVLFGPSLPHYMRSDDAYHGDNPRLRVQGT 108 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHS--MMPAETESEKER-- 117 II+ F+ P Q +L VF A + M + K Sbjct: 109 IIQFEENFMQYSFDHYP--QFHQIRVLLKEARRGVVFHTADAGAVRDMVSAFPELKGFGQ 166 Query: 118 -------TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVAS 170 +AL +V R L S + N D + I S+ + L +A Sbjct: 167 ITGLLDLLQALAVSVPRRMLASPCYYEKFPTA-GNKRIDKIISFINSNYTRSLKLDEIAE 225 Query: 171 CLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFI 229 ++ S + K + ++ Q + R+ YA L + ISQ++ CG++S +F Sbjct: 226 MANMNSSAFCRFFKDATGKTFLQYVADMRIGYACKLLTIGDMEISQIAVECGFDSIPHFN 285 Query: 230 SVFKDFYGMTPLHYVSQ 246 FK G+TP Y +Q Sbjct: 286 RTFKQLTGLTPTQYRNQ 302 >UniRef50_A4CQ66 Activator protein MtlR n=10 Tax=Bacteroidetes RepID=A4CQ66_9FLAO Length = 292 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 85/252 (33%), Gaps = 13/252 (5%) Query: 7 QPCI-VLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKD 65 P I ++ R G + L+ + + S +++ Sbjct: 40 HPEIELVYVNGGNGKRQIGSHVSYYTQGDLILIGSNLPHC---GFTDACTGNTSESVVQM 96 Query: 66 YLRFLNKDLSQIPVWQRSATPI--------LTLPCLTPDVFRVAAQHSMMPAETESEKER 117 FL D IP + T ++ + Sbjct: 97 KTDFLGSDFFSIPEMRNIRQLFEKAKGGIAFTGSAKKKIGEKIEILEYKSDFQRLLAILN 156 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 L + + + + +S+ N +S++ ++ + + +L +A ++ Sbjct: 157 ILNELGSTSEYQILNAEHLSVETQSKENERINSIFNFVKENYREPISLEEMADLTHMTVP 216 Query: 178 LLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 + K N ++ Q + RM +A N L + +I+++ G+N+ S+F FK F Sbjct: 217 SFCRYFKKVTNKTFVQFVNEYRMVHASNLLSENEMSITEICFESGFNNFSHFNKSFKAFT 276 Query: 237 GMTPLHYVSQHR 248 GM+P Y +Q + Sbjct: 277 GMSPSEYRNQLK 288 >UniRef50_Q0SZ95 HTH-type transcriptional activator rhaS n=93 Tax=Enterobacteriaceae RepID=RHAS_SHIF8 Length = 278 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 84/243 (34%), Gaps = 4/243 (1%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 D IV++ I V +P ++ + + + + + N L + Sbjct: 32 HHDFHEIVIVEHG-TGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPD 90 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 + L + + + + V ++ AQ E + +R +LF Sbjct: 91 RFQFLAGLNQLLPQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILF 150 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 + L +K + + +E + N VA LS L ++L Sbjct: 151 --MQLLLLLRKSSLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQL 208 Query: 184 KS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K + + + R+ A + L +++ ++ CG++ +++F ++F+ + +P Sbjct: 209 KQQTGLTPQRYLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFRREFNWSPRD 268 Query: 243 YVS 245 Sbjct: 269 IRQ 271 >UniRef50_C6JFK6 Transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFK6_9FIRM Length = 283 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 91/252 (36%), Gaps = 12/252 (4%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 D+ ++ + +R+N KE + +KA + ++N + L N L S Sbjct: 32 HDEMELIYIESGSGLVRLN-KEILRVKAGDLIIVNRGVLHGIKTDLKNILYFR-SIVFDL 89 Query: 65 DYLRFLNKDLSQ---IPVWQRSATPILTLPCLTPDVF-RVAAQHSMMPAETESEKE---- 116 ++L DL Q I + + + + D + + + + + +K Sbjct: 90 NFLSGPAGDLCQERVISLLMDNQAEFTHIISRSDDNYGNICLLFDRIHSCHKEKKPYYFV 149 Query: 117 RTRALLFTVLSRFLDSKKFVSLMMYMLRN-CVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 + +AL F+ L ++ + I + + + + + S Sbjct: 150 KLKALFFSFFYEMLMGNYITPADKDENKSLASIKKILDYINLNYSQPLTAAELTALSNYS 209 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 K K + I R+ A L+ ++++++ G+N+TSYFI F+ Sbjct: 210 EYYFMKLFKQYTGKTLIAYINDLRIEKAKPMLLHSDSSVTEIALEVGFNNTSYFIKKFQQ 269 Query: 235 FYGMTPLHYVSQ 246 GM+P + Sbjct: 270 ATGMSPHKFRRN 281 >UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLM9_9FIRM Length = 516 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 1/130 (0%) Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 + LL V + + + + + + I+ ++ NL+ +A + LSP Sbjct: 376 SEELLEKVKVILQELTREDQRTGETGSSRIVQEIKRYIQEHYAENINLNALADQVYLSPK 435 Query: 178 LLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 L K +Y+ + RM +A LM I +V++ GY S FI VFK Sbjct: 436 YLSDLFKRETGENYTSYLLYVRMEHAKKYLMQFDLKIYEVAELTGYASPKQFIRVFKKEV 495 Query: 237 GMTPLHYVSQ 246 G+TP Y +Q Sbjct: 496 GVTPGEYRNQ 505 >UniRef50_B9DS09 AraC family regulatory protein n=18 Tax=Streptococcus RepID=B9DS09_STRU0 Length = 307 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 87/255 (34%), Gaps = 11/255 (4%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN-NIIDVSSLNNTLVAHISHDII 63 + + + E + + + +A + L+ + I + + + + Sbjct: 40 HPELEVTYVCEGTARYHI-DYDFFNSQAGDIILIRPNGMHSIHPIAKEKHITDNFQFHLD 98 Query: 64 KDYLRFLNKDLSQI--PVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 L +++ P+ + + P + A + + + E L Sbjct: 99 MLGLSVVDQVSLHYLQPLQNSVNKFVHCIKPHMPGYDDIKACLFDIFSLAKEESRHFEIL 158 Query: 122 LFTVLSRFLDSKKFVSLMMYML------RNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 L + L F+ F ++ +N + I + + + ++ + S Sbjct: 159 LKSKLHEFIYLLYFHRYVVKKNTDDTYRKNEKIRQLIDYINNHYSDNLTIDFLSQFIGYS 218 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 + K TS ++ + R+ A L+ + I +++ G+N+ S F FK Sbjct: 219 KTHFMTVFKQHTGTSCTEFVIQVRLSKACELLIHSTRPILEIANEIGFNNLSNFNRQFKR 278 Query: 235 FYGMTPLHYVSQHRE 249 +Y +TP Y ++ + Sbjct: 279 YYNLTPSQYRKKYTK 293 >UniRef50_A6LWT0 Transcriptional regulator, AraC family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LWT0_CLOB8 Length = 263 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 78/237 (32%), Gaps = 12/237 (5%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 I + E + + +N + + + + + ++ S D+ + + Sbjct: 35 EIAYVIEGSIEVTINDTQCCLKAGEVSICFPNDIHTFNSDGFSKIILFIFSPDLTRSFFG 94 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 + P + D ++ + K + LL+T+L + Sbjct: 95 IRMDKTLENP---------FMSKNIVDDGISSLLYMLHDEYKSVNNKYVIKGLLYTILGK 145 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-N 187 F N ++ + IE H+ +L +A L S L + ++ Sbjct: 146 L--DSHFTFKKSSTFYNSTMQNLLKYIEIHYHEKISLDSIAKDLGFSKFYLSRIFSNKIG 203 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 ++ I R+ A L ++ ++ CG+ S F +FK+ +TP + Sbjct: 204 YQFNDYINRLRINKAQKLLSETDLPVTIIALECGFESQRNFNRIFKELTALTPTKFR 260 >UniRef50_A9U777 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U777_PHYPA Length = 561 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 90/250 (36%), Gaps = 26/250 (10%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD- 61 D+ I T + + + +G + +S + + + + SL + ++ D Sbjct: 329 FSVDESEIQKQTIRQLIRKWSGNDYVSEEE--------KQEMYKLLSLLSGMMDPFYEDV 380 Query: 62 --IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 ++ Y + L+Q+ W +V H + A + Sbjct: 381 GFFLEIYYAIASHLLTQLNRWSVDH-------AALEEVEMDRVSHYQLHATR-------K 426 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 ++ L + N V + + +E + D +L+ ++ + L+P + Sbjct: 427 DAFHYLIHAALRLIEARDDEKKEHTNQVVSRLNRYVEEHLDSDLSLTTLSDLVHLNPYYM 486 Query: 180 KKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 + K + IT R++ A ++ + ++ + G+ S +YF +FK G Sbjct: 487 SRLYKQMTGVNLPDYITDERIKKAKELVVESHLKMHEICKKVGFESPAYFTRIFKKKTGS 546 Query: 239 TPLHYVSQHR 248 TP + +H+ Sbjct: 547 TPQEFREKHQ 556 >UniRef50_A9KTC0 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=A9KTC0_CLOPH Length = 298 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 97/258 (37%), Gaps = 16/258 (6%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDV--SSLNNTLVAHISHDI 62 D+ + L E + + + + + K + + + + + + +S ++ ++ + + Sbjct: 32 HDEYEVYYLLEGERYYFIEHQTYLVKKGSLVFVNRGQIHKTGLAGTSYHDRILIELKEEP 91 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 + F + + + L D R+ + + E +++ + Sbjct: 92 FASFFSFF----GDLSLKDFFSKHYGVLELEEKDQRRIERLLTSISTEIQNKSIGFEISV 147 Query: 123 FTVLSRFL---------DSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLC 173 L++ L + + ++ D V I ++ +L ++ Sbjct: 148 MMKLAKLLIFSMRCKADTNTFIPATTATTAKHRKVDEVASYIVNNCTNPISLDALSKHFF 207 Query: 174 LSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVF 232 +S L + K + ++ I R++ A L+ NIS++S G+ S +YF VF Sbjct: 208 VSKCYLSRIFKEVTGFTVNEYINIHRVQKAQYLLLYSESNISEISAQLGFESITYFERVF 267 Query: 233 KDFYGMTPLHYVSQHRER 250 K + +PL Y Q+R+ Sbjct: 268 KKYTESSPLKYRKQNRKE 285 >UniRef50_C4L9U6 Transcriptional regulator, AraC family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L9U6_TOLAT Length = 284 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 71/217 (32%), Gaps = 6/217 (2%) Query: 30 LKANHMALLNCENNIIDVSSLN-NTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPIL 88 L + V + L + L ++ Q+ + P+ Sbjct: 69 LTTGQFLFVPANCWNKPVWQEDVCVLSLLFGRRQLGLSLVSWSQQQQNFIDVQKHSYPLS 128 Query: 89 TLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVS 148 V + + A + L TVL+ + Y V Sbjct: 129 AKSP----VHSMLQALIDLQASELQTPRSLQLQLMTVLTFTQELLHQPQPEKYQRAQSVF 184 Query: 149 DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSEN-TSYSQIITTCRMRYAVNELM 207 + ++ + HK + VA +SP+ L + + + +++ + R+ A L Sbjct: 185 QRICIYVQENFHKAISRETVARRFNISPNHLSRLFRQQGHMNFADYMVYVRIDRAKFMLR 244 Query: 208 MDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 ++ +++ CG+ T+YF VFK G TP Y Sbjct: 245 RYPMHLEEIAHRCGFRDTNYFCRVFKKKTGRTPTEYR 281 >UniRef50_B0NUV9 Sensor protein n=3 Tax=Bacteroides RepID=B0NUV9_BACSE Length = 1473 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 100/274 (36%), Gaps = 31/274 (11%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 ++ +++ I+++ + + I ++ H ++ EN II + L I D Sbjct: 1204 KLNNEKETILIVEDNQELRFFI--KTIFIQ--HFNVIEAENGIIGLEKSKKYLPDIIISD 1259 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 ++ + S PI+ L + R+ S A+ K + A Sbjct: 1260 VMMPEKDGIEMVRELREDMSTSHIPIVMLTAKSTIESRIEGLESG--ADDYITKPFSAAY 1317 Query: 122 LFTVLSRFLDSKKFVSLMM-----------------------YMLRNCVSDSVYQIIESD 158 L + +D +K + + D V + IE Sbjct: 1318 LKARIFNLIDQRKKLQALFCASLLPTSIEQQPGEGKEASPALSPNDRKFMDKVMKTIEKH 1377 Query: 159 IHK-DWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQV 216 + + + +A+ + +S S+ KKLK+ S + + RM+ A + D +++Q+ Sbjct: 1378 LDNGNLMVEDIANEVNMSRSVFFKKLKTLTGLSPVEFLKEIRMKRAAQLIETDEYSMAQI 1437 Query: 217 SQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 + G N + YF FK YG+TP Y + Sbjct: 1438 AYMVGLNDSHYFSKCFKQQYGITPTEYKESRKPN 1471 >UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NBQ5_EUBSP Length = 563 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 70/198 (35%), Gaps = 6/198 (3%) Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 I + L + +Q I T+ +V+++ A E Sbjct: 366 QKQISRFFERLEQARLPFCQYQMYILEIFTVLMKLVNVYQLDTNVVFKGASDYIEAVLGL 425 Query: 120 ALLFTVLSRFLDSKKFV----SLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCL 174 L + F+ + + + + + Q ++ + ++++ + L + Sbjct: 426 HSLEEIKDWFIQACRQIGTLIQKERMASGKMLVEKARQYVDENYADAEFSVETLCESLHI 485 Query: 175 SPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 SP+ K E ++ +T RM+ A+ L + ++ GY+ +YF FK Sbjct: 486 SPAYFSTIFKKEAGINFISYLTDVRMKEAMRLLDETDEKTYMIAAKVGYSEPNYFSYAFK 545 Query: 234 DFYGMTPLHYVSQHRERT 251 G++P Y R++ Sbjct: 546 KQVGVSPSRYRKGLRDQQ 563 >UniRef50_UPI0001C3678C two component transcriptional regulator, AraC family protein n=2 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3678C Length = 539 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 77/190 (40%), Gaps = 7/190 (3%) Query: 61 DIIKDYLRFLNKDLSQIPV-WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 DI+ + +++L Q+ + + L + + +++ + Sbjct: 347 DILAGQQKLSSRNLQQLGLDLTQMVYSWLGSMNIYAHMLFDNEENNKIYGRVALSSHNML 406 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLL 179 L +LS+ ++ K V + + D++ ++ ++ + ++ + L+P L Sbjct: 407 QYLEYLLSKAMEYKDVVE-----RPHTIVDTIRDYMDHHFQENLSRDDLSRLVFLNPDYL 461 Query: 180 KKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 + K E S S + R+ A L +S +S GY++ +YF VFK+ GM Sbjct: 462 SRLFKKEMGLSISSYLIQKRIDLAKELLSTTRTPVSVISSQAGYDNFAYFTKVFKEKTGM 521 Query: 239 TPLHYVSQHR 248 +P Y + + Sbjct: 522 SPNEYRKKCQ 531 >UniRef50_B9Y678 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y678_9FIRM Length = 299 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 79/238 (33%), Gaps = 4/238 (1%) Query: 12 LLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYL--RF 69 + + ++ + + A H ++ + + I+ D+ + F Sbjct: 51 YVVRGEALFLIDDQ-AFPVHAGHAVIIPPRGILTQANPKEEVETYFINFDVSNLTMRDEF 109 Query: 70 LNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRF 129 + + L P +Q L L +F AAQ + + + + +++ Sbjct: 110 MTRLLEWFPFYQVRDNERQILRYLFERIFDEAAQPQLGSSLIVQNLFCSLLIKMVRMAQQ 169 Query: 130 LDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENT 188 ++ + + + + + I + VA L +S L K K + Sbjct: 170 GEAVRDLQPVTLSSTRYLISRAVSYVYQHIGDHLTVKEVADSLNISEIYLYKLFKEHTSQ 229 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 S I R+ A L I ++Q G+ + YF + F + G +P Y + Sbjct: 230 SPQNFILEYRLHLAQEYLSNPDFPIKVIAQQLGFANADYFSACFHKYIGCSPSVYRQR 287 >UniRef50_A9U7P8 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7P8_PHYPA Length = 194 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 3/191 (1%) Query: 60 HDIIKDYLRFLNKDLSQIPVWQRSATPIL--TLPCLTPDVFRVAAQHSMMPAETESEKER 117 + ++ L L K + +++ A + L +A S P E+ + Sbjct: 2 QEWVRRSLDQLEKKQAVASDYRQFAKDVAGELDKALRQLPAAASADASGRPPLEETRRFY 61 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 RA + L + ++ V + + + + +D NL M+A L ++ Sbjct: 62 CRAQYERWFADLLHPVLQGIRRKTEEHDPITSFVTEYMCTHLDEDINLDMMADKLNITSG 121 Query: 178 LLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 L K ++S + R+R A L I V+ GY + + FI +FK Sbjct: 122 YLSTYFKEKTGVNFSDYLNDLRIRTAKELLQNLDLRIQDVAARVGYRNVNSFIRMFKRHA 181 Query: 237 GMTPLHYVSQH 247 G+TP Y ++ Sbjct: 182 GITPGEYRRKY 192 >UniRef50_UPI0001787F16 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787F16 Length = 280 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 8/253 (3%) Query: 1 MRICSDQP--CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLN---NTLV 55 M + P + L + + ++K + ++N + SS ++ Sbjct: 29 MPRPHEHPYFELYYLLNGE-RVYFMDDNVFTVKKGDLMIVNPHDLHSTASSEKLLFERVL 87 Query: 56 AHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK 115 S I+ + L + P+ P + + + A+ S Sbjct: 88 IGFSRTFIEQGDAGVANLLDHGTS-RLIRIPLKHQPEIERLLHSMLAECQTEQTHYSSLV 146 Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 L L R + + + + + Q I+S+ H+ L VA +S Sbjct: 147 RSLMNELLIRLHRIETTLQSQTHEYEHPMHQKISEIAQYIKSNFHEKLTLEQVAKQFYIS 206 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 PS L + + + + R+R A L+ ++ +S+ G+ ++F FK Sbjct: 207 PSYLSRVFTRLTGFHFREYVQVVRIREAQKMLVSSRDSVQIISELAGFEHIAHFNKTFKK 266 Query: 235 FYGMTPLHYVSQH 247 G TPL Y +H Sbjct: 267 IAGTTPLQYRKRH 279 >UniRef50_A8SRM1 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SRM1_9FIRM Length = 296 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 87/247 (35%), Gaps = 11/247 (4%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYL 67 I + E + V G LK L+ + +S ++ + Sbjct: 41 YLIHFVLEGEGDFYVKGAHYH-LKKGQGFLIEPDTPATYISDEHHP----WRYVWFGFSG 95 Query: 68 RFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLS 127 R + LS I + Q PI T + + ++ R +L+ LS Sbjct: 96 RCAHDTLSSIGLTQ--NQPIFTCE-DGDKLKKYVFDMLAHNTSGHADHYRLMGMLYLALS 152 Query: 128 RFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-E 186 +++K + N + I++ + ++ + ++ S K Sbjct: 153 VIANAQK--DKLEAPSGNAYVNHAISYIQNHYSMPMKVEELSDYVGINRSYFSDLFKQYT 210 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 S + + R+ A + L + ++ ++ SCGY S F +F+ G++P Y Sbjct: 211 GMSPVKYLQNFRITKAQHMLTISELSVESIAFSCGYQSAEAFHKIFRKTTGLSPNAYRLG 270 Query: 247 HRERTVA 253 R+RT++ Sbjct: 271 KRQRTLS 277 >UniRef50_UPI000178AA6A transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA6A Length = 285 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 78/249 (31%), Gaps = 8/249 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 + I+ + + G + K M ++N +S ++ + D Sbjct: 38 HEHLEILYFVSGEATLEC-GSTTFTAKEGDMIVINRNELHYGLSQSDHLFYYALIADFSL 96 Query: 65 DYLRFLN----KDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETE--SEKERT 118 L+ K ++ I + ++ + + + E + E Sbjct: 97 LQSHSLDAPEMKFITPITQNRLIFENRISGADALAPMLSIIKELERQEFGYELAIKSELY 156 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 R L + + M +++ IE +D ++ ++ LS Sbjct: 157 RLLTLLLRGYVATVLTQDEYVERMKNVERFAPIFKYIEEHYREDLSVEQLSGMAGLSRFH 216 Query: 179 LKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 + K + ++ + R+ A L +S+++ + G+N YF FK + Sbjct: 217 FSRLFKEISGRTVTEYVNETRLNRADYLLRESPLTVSEIAAATGFNDIYYFSRTFKKYKR 276 Query: 238 MTPLHYVSQ 246 M P + Sbjct: 277 MAPSALRKK 285 >UniRef50_C4FY13 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FY13_9FIRM Length = 271 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 77/252 (30%), Gaps = 11/252 (4%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 +I S+ I + + ++ K + + L +D + + +S Sbjct: 28 KIASEDLLIFYVNKGAGICHSEYEQHEIKKRDVIILNPGTTITLDPIRKIDWICIALSGV 87 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 + + + L + R +M K+ + Sbjct: 88 VFTSSQEANSSSQLFVASHPNPTLKYYLDLALIEESNRFRGSDLIM-------KKLIECV 140 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 + +L S K SL V I + K L ++ + ++ L + Sbjct: 141 MIHLLRHNELSIKDASLQAKHNEIDVLQ---NYIRKNYSKKITLEELSDLVDINKYYLIR 197 Query: 182 KLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K S + R+ A L +S +S G++S S+F FK+ TP Sbjct: 198 LFKQQTGLSPIDYLIHVRLEEAEKLLAKSNITVSDISDRVGFHSPSHFSKTFKENNHCTP 257 Query: 241 LHYVSQHRERTV 252 Y ++ TV Sbjct: 258 SQYRKRYSANTV 269 >UniRef50_A7VFB6 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VFB6_9CLOT Length = 323 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 38/282 (13%), Positives = 79/282 (28%), Gaps = 38/282 (13%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 ++ + + D + +N KE M + E + + + DI+ Sbjct: 42 HEEMEWIYFQKGDFPVWINTKEYQVHAPAFMCIHPEELHALILEKDGIESAVVFPVDILC 101 Query: 65 ---------------------------------DYLRFLNKDLSQIPVWQRSATPILTLP 91 + L K++ Q+ + Sbjct: 102 FERYDAAEAKVLGPLAEGKLRMPVLCQSGDAAFEELSACYKEIEQVLRQMKEHDTKKVQH 161 Query: 92 CLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNC----V 147 + A + +A + +++ F + Sbjct: 162 LDSSITRENVAGEPKQNLQKNMLYLNIKAKMLELIAVAYKYDLFTRQVREDREESGTVEN 221 Query: 148 SDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNEL 206 V Q I LS +A + ++ + K + ++ I R+ A L Sbjct: 222 LKKVLQYIGEHYGSPIRLSELAELVNMNEQYFCRYFKKNIGKTITEYINVIRVEKAATAL 281 Query: 207 MMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 I ++ +CG+++ YFI FK GMTP Y + + Sbjct: 282 AETEDKIIDIASACGFDNIGYFIRRFKKEKGMTPSEYRKKSK 323 >UniRef50_A0AET6 Complete genome n=16 Tax=Listeria RepID=A0AET6_LISW6 Length = 277 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 81/245 (33%), Gaps = 10/245 (4%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLV-AHISHDI 62 D I ++ + V + G E + L+ M + N D++ T HI Sbjct: 31 HHDFLEISIIYDGKVIYDIEG-ERVELEKGDMLIFNPGVKHYDITEPGMTNAQLHIGFRN 89 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 N + ++ L + A+ P K L+ Sbjct: 90 FTLEGYSRNTFPFKKAFLRKKEEDSAILSISKQIIEEKDAEK---PGYDLILKAFVMQLI 146 Query: 123 FTVLSR----FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 VL L++ + + + + +E +D +LS ++ + +SP+ Sbjct: 147 IHVLREATPEQLENNGVKLSTDEQQKQLLVNEIIHYMEKHHTEDVSLSTLSQTMYISPAY 206 Query: 179 LKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 + K K E S + R+ A L + Q + GYN YF +FK +YG Sbjct: 207 ISKVFKEETGESPINYLIKIRLSRAEELLKNKNITVKQAANMVGYNDAYYFSKLFKKYYG 266 Query: 238 MTPLH 242 P Sbjct: 267 FPPSE 271 >UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vibrio RepID=D0MC89_VIBSE Length = 269 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 16/253 (6%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN----NIIDVSSLNNTLVAH 57 R + + ++ E + + E LKA L N + I L Sbjct: 19 RYTATHNGLYVVEEGALLVHQPNGEQFELKAGDFTLYNSADLSSAEAIPSEKGFKALALV 78 Query: 58 ISHDIIKDY---LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESE 114 + ++ D+ L + + SA + L + +A++++ + Sbjct: 79 FNPNLFCDFKKAHPMLRSKTEERRFYPFSAQASSEVAQLKDTLVNLASRNAPDYTQG--- 135 Query: 115 KERTRALLFTVLSRFLD-SKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLC 173 + +LS ++ +S++ S + IE++I KD L +A+ + Sbjct: 136 -----HIAMALLSLMVEVEPNILSIIDDASSLSDSQKAIKYIENNIEKDITLEGLAAHMS 190 Query: 174 LSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 +S + LK++L +E+ S+SQI+ R+ +A +L M K+I++++ G+ S ++F + FK Sbjct: 191 MSIATLKRRLAAEDLSFSQILKVKRINFAATQLRMSEKSITEIAFESGFKSAAHFSTAFK 250 Query: 234 DFYGMTPLHYVSQ 246 Y MTP + +Q Sbjct: 251 SVYNMTPKDFRNQ 263 >UniRef50_C6I5T7 AraC family transcriptional regulator n=18 Tax=root RepID=C6I5T7_9BACE Length = 297 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 88/245 (35%), Gaps = 18/245 (7%) Query: 21 RVNGKEPISLKANHMALLNC-------ENNIIDVSSLNNTLVAHISHDIIKDYLRFLNKD 73 R+ G + + L+ E + + + S D+ N+ Sbjct: 54 RIVGDSAEVISDYDLVLITGKDLEHVWEQHDCHSKEI-REITIQFSSDLFFKSFINKNQF 112 Query: 74 LSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL-LFTVLSRFLDS 132 S + +++ L + ++ + +E + + L + LS F + Sbjct: 113 DSIRDMLEKAQKG---LCFPMSAILKIYPLLDTLASEKQGFYAVIKFLTILYELSLFNEE 169 Query: 133 KKFVSLMMY-----MLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK-SE 186 + +S + + V + I + ++ L+ +A + ++P + K Sbjct: 170 ARTLSSSSFAKIGIHSDSRRVQKVQEYINAHYQEEIRLNQLADMVGMTPVSFSRFFKLRT 229 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 + S I R+ +A L+ +I+++ CG+N+ S F +FK +P + Sbjct: 230 GKNLSDYIIDIRLGFAARLLVDSTMSIAEICYECGFNNLSNFNRIFKKKKECSPKEFREN 289 Query: 247 HRERT 251 +R++ Sbjct: 290 YRKKK 294 >UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein n=3 Tax=Aliivibrio RepID=B5ETV0_VIBFM Length = 266 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 100/252 (39%), Gaps = 11/252 (4%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNT----LVAH 57 R ++ I ++T R + I+L A L + + + +N Sbjct: 20 RYPVERNGIFIVTSGQFHYRDRSGDDITLNAGDFLLYSSGDISKIKMTNDNNNFKAQSVV 79 Query: 58 ISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKER 117 I + + +L + N P + V ++ ++ + Sbjct: 80 IDVALFQKFLSYSNA-----PAHSPCNSDTFIFTAQDTSVVKLLELLKEQLTNNDN-NDT 133 Query: 118 TRALLFTVLSRFLDSKK-FVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSP 176 L +LS ++ + + + + S + + +E I D + MVA L +S Sbjct: 134 LEFLTLALLSEMVNKQPCLIPFIQKISVLTTSQQLIRYVEEHISADLTIDMVAPKLGMSA 193 Query: 177 SLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 S LK+KL+S+ S++ ++ R+ YA +L + K I++++ G+ + ++F + FK Sbjct: 194 STLKRKLQSDKLSFAHLVKVKRINYAATQLRLTRKTITEIAYDTGFKTAAHFSTSFKSVK 253 Query: 237 GMTPLHYVSQHR 248 G+TP + + Sbjct: 254 GITPKEFRDSLQ 265 >UniRef50_C7IFZ3 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IFZ3_9CLOT Length = 296 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 34/257 (13%), Positives = 85/257 (33%), Gaps = 12/257 (4%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCE-NNIIDVSSLNNTLVAHISHD 61 D +V++ + E +K + + N + ++ + + Sbjct: 32 FHHDFFELVIVLNGTAT-HIVNSEEFFIKKGDVFVFNMDLSHGYKDPHNFKIINIMYKPE 90 Query: 62 IIKDYLRFLNKD--------LSQIPVWQRSATPILTLPCLTPD-VFRVAAQHSMMPAETE 112 + + + K L + S + L+L + + V + A+ + + Sbjct: 91 RLDEICNDIKKSPGYQALFVLEPFFRKKYSFSNTLSLSISSLEYVAELGARINEEYKRKD 150 Query: 113 SEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 + F + +L + + + +E + L +A Sbjct: 151 QGYQTMIYARFMEMVVYLSRQYIIENKLLHDTFVHLAKAILFLEDNYLNPIKLEKLADEA 210 Query: 173 CLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 +S + K T+ I R+ +A + L I+ ++ G++ ++YF Sbjct: 211 HMSVRHFNRIFKENYGTTPFNCILHLRVNHACSLLKNSNLCIADIALESGFSDSNYFSRQ 270 Query: 232 FKDFYGMTPLHYVSQHR 248 FK G+TP Y ++++ Sbjct: 271 FKKITGITPKEYRARYK 287 >UniRef50_A9KSF8 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KSF8_CLOPH Length = 292 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 82/252 (32%), Gaps = 12/252 (4%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 D + + R+ +KA M + N + + L + + Sbjct: 34 HQDFTELTYILSGTSKYRI-DDIYYDVKAGDMIVCNPG--VFHQNMLLDGEEPLVEFCTG 90 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFR----VAAQHSMMPAETESEKERTR 119 +F N + I + + L+ +A + + K + Sbjct: 91 FTDFQFKNMPENTIQLSNQGHIVHLSSEAKRETSRLCYDMLAENEAGQVGKYFMLKAQLI 150 Query: 120 ALLFTVLSRFLDSKKFVSL---MMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSP 176 +L ++ +++ K ++ + + + +L +A + LSP Sbjct: 151 QMLMLLMREVIEAPKVTQKGCNFETYSKSYAVKRIINYLMENYEHKISLDQIAHNMYLSP 210 Query: 177 SLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGK-NISQVSQSCGYNSTSYFISVFKD 234 + K K E S + R+ A L +I ++ GY+ +F +FK Sbjct: 211 VYISKIFKEETGESPINYLIKIRLEKAKEILSEREGGSIKNIANEIGYDDVYHFSKLFKK 270 Query: 235 FYGMTPLHYVSQ 246 ++G++P +Y Sbjct: 271 YFGISPQNYRKS 282 >UniRef50_C6QRS7 Two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRS7_9BACI Length = 269 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 12/189 (6%) Query: 73 DLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDS 132 DL + I+ L + + M A+ K + + ++ R++ Sbjct: 64 DLIEFMKGIYHKNSIILLSGYDLFGSEILQRALEMGADEILMKPSHQEDVIALIRRYMTF 123 Query: 133 KKFVSLMMYM-----------LRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 + + V S IE + L VA + +SP L K Sbjct: 124 NEKENDKFDSMLDGITAKNSIQDGKVIQSALNYIEENYQNGITLEEVAEHVHISPFYLSK 183 Query: 182 KLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K E ++ +T +M+ A L + ++ Y +YF VFK G+TP Sbjct: 184 LFKKELKMNFVSYVTEKKMQKAKELLENTDLPVIHIALELNYQEPNYFSKVFKKVVGITP 243 Query: 241 LHYVSQHRE 249 Y + ++ Sbjct: 244 SEYRKRSKK 252 >UniRef50_C6CZ23 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ23_PAESJ Length = 522 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 69/210 (32%), Gaps = 15/210 (7%) Query: 52 NTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAET 111 N+ + +L L ++ + L+ +F + M T Sbjct: 312 NSFTESFKRERFDTAFDYLLDHL-EVFKTNYTTDVFEFKSFLSNVIFNITVLLGNMNYGT 370 Query: 112 ESEKERTRALLF------------TVLSRFLDSKKF-VSLMMYMLRNCVSDSVYQIIESD 158 + + + +L+ F+ K ++ N + I Sbjct: 371 QQLETKKYYYFKAIEESRNANTAAELLTAFIGEAKLCIAEKAEQSGNANMKRLLDYIHEH 430 Query: 159 IHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVS 217 + NL+ +A +PS L N + + R+ A L +IS++S Sbjct: 431 YAESLNLTEMAKHFHFNPSYLSSYFSTHHNEGFVDYLHRVRLEKASELLRAGEASISEIS 490 Query: 218 QSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 GY+ SYF VFK G++P Y Q+ Sbjct: 491 GMVGYSDHSYFCKVFKKHTGLSPSRYRQQN 520 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 104/253 (41%), Gaps = 2/253 (0%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 R + + + + + + + L A AL N + + ++ Sbjct: 24 RYPVTKNGLFFVEQGSLTVTQDSGATSELTAGEFALYNSGQLKEAQAQPGENGFSALAL- 82 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 + L +++ + T + E + + L Sbjct: 83 VFSITLLQKFRNVYPLSKIPAQQTDTFFKFSGQHKRIDQLKDMLIEEVERKQNSQAQEHL 142 Query: 122 LFTVLSRFLDSK-KFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 +++ ++ + + +++++ + + + Q IES+I ++ +L +A + +S + LK Sbjct: 143 ALALMALMVEKQPELLNMIIRATQFSETQKIIQFIESNIEEEISLETLAKHMGMSTATLK 202 Query: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 ++L +E S+SQ++ R+ +A +L + K+I+ ++ G+ S ++F + FK MTP Sbjct: 203 RRLAAEEMSFSQLLKIKRISHAATQLRVTDKSITTIAYESGFKSAAHFSTAFKAVQQMTP 262 Query: 241 LHYVSQHRERTVA 253 + ++ ++ A Sbjct: 263 KEFRAKVQQHGKA 275 >UniRef50_C6LB63 Putative response regulator receiver domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LB63_9FIRM Length = 517 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 1/164 (0%) Query: 87 ILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNC 146 + L + Q + + + LL V L+ K ++ + Sbjct: 353 FQIVKALDSMMSEEMKQKTDESLMRIYQSQTLERLLRFVYGFLLEIGKNINFQKEIRGVD 412 Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNE 205 V + + +E + + M+A + S K+ S+S +T RM+ A Sbjct: 413 VLEHCREYLEKHYMDEITMEMIAEKYYFNASYFSTVFKNYFGKSFSGYMTELRMQKAKEF 472 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 L+ I +++ GY +YFI FK FYG TP Y + Sbjct: 473 LISTDWKIKEIASKTGYRDANYFIRAFKKFYGYTPEEYRKLSAQ 516 >UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Thermoanaerobacteraceae RepID=B0K234_THEPX Length = 537 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 6/211 (2%) Query: 38 LNCENNIIDVSSLNNTLVAHISHDIIKDYLRF-LNKDLSQIPVWQRSATPILTLP-CLTP 95 +N E ID + + + I +++ F +D+ +I ++ Sbjct: 318 INKERLFIDRLMTGDLQGSFTIFNEIYEWMVFEYQEDIDKIKAKLIEIIGVIKRNLSYYA 377 Query: 96 DVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQII 155 + + ++ ++ + + L ++ K ++ + + + I Sbjct: 378 EDENFIENRELEEILKINDVDKIKFIFINTLKNLFENIKTIN---KEKMDTFIAKIIRFI 434 Query: 156 ESDIHKDWNLSMVASCLCLSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNIS 214 E + +KD L VA + +S K K ++ +T R+ A L + +I Sbjct: 435 EDNFNKDITLDDVAKEVNMSYHYFSKFFKDQTGKNFIDYLTNLRVTKAKELLEDETVSIK 494 Query: 215 QVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 +V GY+ +YF +FK GMTP Y S Sbjct: 495 EVCYKVGYSDPNYFSKIFKKATGMTPTEYRS 525 >UniRef50_UPI0001692C08 transcriptional regulator (AraC/XylS family) protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692C08 Length = 288 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 73/249 (29%), Gaps = 12/249 (4%) Query: 6 DQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCEN---NIIDVSSLNNTLVAHISHDI 62 D + + GKE + LKA L+ E D + Sbjct: 42 DYYLMHHVISGKGIFMYRGKE-LELKAGDTFLIEPEELVRYEADQVNPWMYRWVAFQGKG 100 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 + + L S+ V R + + + + + +L Sbjct: 101 VPEALEKTGFSSSRCIVHTRDNQNV------SELFSTILSVLQDKKEGAHQKALGYLYVL 154 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 F L + K + + + + +D ++ +A L + + L + Sbjct: 155 FGELCEAIYPKTGIGMRTSSESGRTVQKAIHYLSTQYAEDISIETMADNLGYNRAYLSRI 214 Query: 183 LKSE-NTSYSQIITTCRMRYAVNELMMD-GKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K E + + R+ A L I Q++ S G++ YF FK FY P Sbjct: 215 FKQETGLTPVTFLLKLRIDKARFLLRQRMELTIEQIASSVGFHDPLYFSKQFKRFYKCAP 274 Query: 241 LHYVSQHRE 249 Y + Sbjct: 275 TEYRDSIKH 283 >UniRef50_A6LD39 Transcriptional regulator n=3 Tax=Bacteroidales RepID=A6LD39_PARD8 Length = 297 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 75/239 (31%), Gaps = 4/239 (1%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDY 66 + ++ T+ + W ++GK + + NH +L E SS ++ + +H K Sbjct: 57 EYLLIYCTKGEGWYVLDGKRYV-VPENHFFILPAEKPHQYGSSEHDPWYIYWAHFKGKKA 115 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 ++ IP+ + I ++ V + L Sbjct: 116 KYISDQLQGVIPIDMDDNSRIGDRIAFFDELLNVLESGTDEATVNYVNLSFNH--LIASF 173 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KS 185 ++ + ++ L +AS S S + + K Sbjct: 174 LYVKTYREAKFSKSKAENTFFISLATHFMTENLENKLTLKELASHFGYSESYMYRLFFKE 233 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + ++ A L+ I+QV+ G++ YF +FK G +P Y Sbjct: 234 TGYAPMNYFLHMKIDRACQLLLHTNMKINQVALKLGFDDPYYFSRIFKKIVGTSPKDYR 292 >UniRef50_C6CWF4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWF4_PAESJ Length = 451 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 9/143 (6%) Query: 108 PAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSM 167 ++ S+ E R+ + + L R + ++ V D Q I ++ +L Sbjct: 316 SSDEHSDSEDQRSYVISALQRIREQREQ-------QTINVMDKAKQYIGLHFTEELSLEE 368 Query: 168 VASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDG-KNISQVSQSCGYNST 225 A + L+P K K + ++ +T R+ A + + +V GY Sbjct: 369 TAEHVHLNPHYFSKVFKQQVGATFIDYLTGLRIEKAKQLISSADELALKEVCFEVGYKDP 428 Query: 226 SYFISVFKDFYGMTPLHYVSQHR 248 +YF VFK G+TP Y SQ + Sbjct: 429 NYFSRVFKRVTGLTPTEYRSQAK 451 >UniRef50_A8RL67 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RL67_9CLOT Length = 272 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 83/247 (33%), Gaps = 9/247 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 D + L E + + + + + N + + Sbjct: 26 HDYFELYYLEEGE-RFHIIQDRLYCIHPGEFLIFSPYVMHHSYGQEN------VPFKRLL 78 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 Y D Q+ T + V + + Sbjct: 79 VYFSKEEVDSVQLLKVLEKGTGVYKPDQREKQVVHRMLDDLLKEQDDPQAYHEDYIHTLL 138 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 ++ ++ + + RN ++D V I + +D ++ +A +SP L ++ K Sbjct: 139 NMALLTIARNIQTPVKPEKRNRITD-VISYIHQNYQEDISIDQLAQMSYVSPYYLCREFK 197 Query: 185 S-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 N++ Q + R+ A M KNI+++S+ G+++ ++F VFK GMTP ++ Sbjct: 198 RYTNSTIIQYVNVTRVMNAQRMFMETNKNITEISRDTGFSNITHFNRVFKSVMGMTPSNF 257 Query: 244 VSQHRER 250 ++ Sbjct: 258 RKMYKTE 264 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 8/243 (3%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDI 62 + P I+ + + + + L N M + ++ N Sbjct: 21 VRIHSPSIIQIIKGSKRLFWKDEAFDILHPNIML--------CEANASLNFENLPQQGRF 72 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 + F ++ S +P + D A +++ E ES E T+ Sbjct: 73 LSRMFSFHCVPSDEMLELSMSNALGNYVPAVETDKALQATLNALFSFERESLSEATQRYW 132 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 L + L + + + S + + + D L VA +S + L +K Sbjct: 133 MMGLYQQLAERGLLHRLFTSSNTSFSQKLSRYLSRSPGDDHPLEFVAERFAMSRATLIRK 192 Query: 183 LKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 LK E T Y +++ R+ +A+ + N++ ++Q CGY S F FK +G+TP Sbjct: 193 LKQEGTQYREVLAEVRLNHALYLMQNGSYNVALLAQLCGYQSEGRFSQRFKGKFGLTPSE 252 Query: 243 YVS 245 Y+ Sbjct: 253 YIK 255 >UniRef50_C6JBV9 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBV9_9FIRM Length = 527 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 6/168 (3%) Query: 80 WQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLM 139 ++ L + + + + ++ L ++ R ++ F++ Sbjct: 365 IEQIVFSYLHKNGIEAHTLFSSEERDELITKSLDAVPYMFNYLRYLIQRAVEYNSFINE- 423 Query: 140 MYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCR 198 ++ V D V I +D + +M+A + L+P L + K TS ITT R Sbjct: 424 ----KDSVVDIVLNYIHQHYSEDISRTMLADMVYLNPDYLARLFKKQTQTSIINYITTYR 479 Query: 199 MRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 + A L+ + V+ GY + SYF +FKD G TP Y + Sbjct: 480 LEKAKELLLNPDIPVGTVALKVGYGNYSYFSKLFKDVVGCTPNEYRKK 527 >UniRef50_C2KWQ1 AraC family transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KWQ1_9FIRM Length = 311 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 80/243 (32%), Gaps = 10/243 (4%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRF 69 ++ + V E L + LL + L D F Sbjct: 61 LLHVVYSGVGTLFVNGEYYHLSKGNAFLLYPHVEAWYEADLTEPWSYFWIGVRGVDADSF 120 Query: 70 LNKDLSQIPVWQRSATPILTLPCLTPDVFRV--AAQHSMMPAETESEKERTRALLFTVLS 127 + P+ + + + + Q E + + L F L Sbjct: 121 FTEVGFSKEK------PVGIVHQMDNLLLYINKILQKQDYTIEEQLSRSAYMHLFFANLL 174 Query: 128 RFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-E 186 R + + L + S V ++ H+D ++S +A + + + L K Sbjct: 175 RGKQEEAHWGGPLKDLGSH-SARVRAYLDEHYHEDISISALAKEMGIHRAHLFNSFKKDT 233 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 S + + RM+ A L GK+I++++ GY+ F +F+ G++PL Y + Sbjct: 234 GYSPKEYLLYIRMQNAKAMLRRTGKSIAEIAYMVGYHDPLSFSKIFRQKIGVSPLQYRNM 293 Query: 247 HRE 249 E Sbjct: 294 KEE 296 >UniRef50_B0NGA4 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NGA4_EUBSP Length = 295 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 85/242 (35%), Gaps = 12/242 (4%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 ++Q ++ TE I V G E ++ + + C+ + + Sbjct: 58 AEQYILIYCTEGKGTIEVEG-EVFEMRKSGAFCIPCKKGHRYYADAKDP--------WSI 108 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 ++ F ++ + P+ + P+ + + ++ + + + Sbjct: 109 LWVHFKGENTAYFPIDEPHVVPMNSRHSDNRMMVLFNLLFRVLRRNYTLGNFIYISQVLS 168 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 ++ + ++ V +++ V + + ++ + L ++ + LS S L K Sbjct: 169 LILSEVYYREKV--DESSVQDRHVTMVIRFMYENLTRSLTLEEISEEVQLSRSYLNTIFK 226 Query: 185 -SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 S + +M+ A L I +VS GY YF +FK G++P Y Sbjct: 227 NQTGRSPVEFFIHLKMQEACKLLKNTNLYIYEVSSRLGYEDQYYFSRIFKKVVGVSPKDY 286 Query: 244 VS 245 + Sbjct: 287 KN 288 >UniRef50_UPI0001C365B5 response regulator receiver protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C365B5 Length = 347 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 79/227 (34%), Gaps = 4/227 (1%) Query: 25 KEPISLKANHMALLNCENNIIDVSSLNNTL---VAHISHDIIKDYLRFLNKDLSQIPVWQ 81 K+ I A M E N+ + ++ I I + + + Sbjct: 120 KDEIQKNAPSMIQGFQELNLFLQQNAPEAFEEKLSSIYRKAIYLVQKAPDDSSDILLNCM 179 Query: 82 RSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMY 141 R I+ ++ ++ + A L + + + Sbjct: 180 RQVCSIILHYFWNLAPQKINLDQETTNLYHFTQVPDSEAEWSAFLMGYYNRLHLSVAREH 239 Query: 142 MLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMR 200 + + Q +ES ++ +LS VA + ++PS L +K E ++ II R+ Sbjct: 240 QNYSLIITHALQYLESHYQQELSLSEVAKVVSVNPSYLSSLIKKETGKNFIDIIIEARLE 299 Query: 201 YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 +A L I++V+ G+ +YF FK G++P Y +Q Sbjct: 300 HAKKLLQNPSHRINEVADLSGFKDYAYFYQTFKKHVGLSPKEYRNQF 346 >UniRef50_A9KRL7 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRL7_CLOPH Length = 283 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 87/245 (35%), Gaps = 3/245 (1%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDY 66 + I+ + + + + + G E + LK + +A + +I++ Sbjct: 40 EYEIIRILDGEFRLFLEGTEYL-LKKDDVAFIKDGKLHGGSPKDCTYECIVFDFNILRQR 98 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 + L +I + S P+ C+T + + E + L F L Sbjct: 99 SFLTDTFLRKIAHQKISIYPVHNKTCITSPLITMFDAIRSEEEGYELSILGSLLLFFAAL 158 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSV-YQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 + K + + ++I +D K L ++ LSP + + Sbjct: 159 QKNEYYSKEEEYDLKSQKAIEQLKASLELIVTDYAKPLTLQELSRECGLSPKYFCRFFQE 218 Query: 186 -ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 N + + R+ A ++ ++ ++ CG+N SYFI FK + G+TP Y Sbjct: 219 YTNRTPIDYLNYYRIEQACYQISQSEDTLTDIAFRCGFNDFSYFIKTFKKYKGITPKKYQ 278 Query: 245 SQHRE 249 +E Sbjct: 279 MMWKE 283 >UniRef50_C6CXJ2 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXJ2_PAESJ Length = 289 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 85/242 (35%), Gaps = 9/242 (3%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLN-CENNIIDVSSLNNTLVAHISHDIIKDY 66 I T + ++ I L L+ + S + + + Sbjct: 44 HVIFQYTLNGLGYIEYEQQCIPLPRGTGFLVKVPSKHRYFYKSEDEPWEVLWLNLSGDEA 103 Query: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 R + ++Q PI+ +P + + E ++K + A ++ + Sbjct: 104 SRIWDLVIAQ-------EGPIIRRDPNSPIIHAFRKLLRSIAEEKITDKYQLSAKVYEWM 156 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KS 185 + + + VS + + + ++ + L +A ++ L + KS Sbjct: 157 IALVQTSREVSREISTSSSSLIQRAKDFMKQHYAQPLTLDQLAEHCGVNKYHLCRLFQKS 216 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 + TS + RM AV L + + + CG+ ++SYF VF+++ MTP Y Sbjct: 217 DQTSPLAYLRDRRMEAAVALLRTTELPVQTIGEMCGFENSSYFGKVFREYMSMTPKEYRM 276 Query: 246 QH 247 + Sbjct: 277 KK 278 >UniRef50_B6FKZ8 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FKZ8_9CLOT Length = 540 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 75/201 (37%), Gaps = 10/201 (4%) Query: 51 NNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAE 110 ++ ++ I + I+ + + V I + L + + + + Sbjct: 348 SDAYISRIEEENIRSTMVRQYVVIDVCIVILSFCERISSANRLQEEAEELQKMMQKIHSL 407 Query: 111 TESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIH-KDWNLSMVA 169 +E +K V+ ++ + + + + + IE+ ++ +L+ VA Sbjct: 408 SEIKK--------YVVRLLNEAIELRDAESGRRYSDLIAAAKKEIENHYMTEEISLNTVA 459 Query: 170 SCLCLSPSLLKKKL-KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYF 228 + +SPS K ++ + +T R+ A LM S++ GY YF Sbjct: 460 ISVGMSPSYFSSIFSKEAGKTFVEYLTEVRIEKAKEFLMCSSMKTSEIGYEVGYKDPHYF 519 Query: 229 ISVFKDFYGMTPLHYVSQHRE 249 +FK G +P Y ++ +E Sbjct: 520 SYIFKKVQGCSPKEYRARGKE 540 >UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Thermoanaerobacter RepID=B0K3C5_THEPX Length = 530 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 85/240 (35%), Gaps = 13/240 (5%) Query: 16 KDVWIRVNGKEPISLKANHMALL---NCENNIIDVSSLNNTLVAHISHDIIKDYLRFLNK 72 + I + LK + ++L E I + ++ + +++ + L Sbjct: 289 GEGNIIKKEDIEVFLKPHFVSLNTKRKQEEMIEFLQLGDSQKALQLLKEVVGEILTTTKN 348 Query: 73 DLSQIPVWQRSATPILTLPCLT------PDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 +L + + + + S + ++ R L T Sbjct: 349 NLLECQINLIEIMMRIVKTISEVGMLTGEEGRVFQFCFSHLQKLMRTQNYRGITLWAT-- 406 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE 186 FL+ + N + + V + I + K+ L ++ + L+P + K E Sbjct: 407 -SFLEEISDLFAGAKRNENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSRLFKKE 465 Query: 187 -NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 +Y++ +T R+ A L IS++++ GY +YF VFK G++P + Sbjct: 466 VGCTYAEYLTRIRIEAAKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISPSEFRK 525 >UniRef50_A7VU71 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VU71_9CLOT Length = 289 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 5/196 (2%) Query: 58 ISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK-- 115 IS +++ L K + A L P D+ RV + + E E K Sbjct: 87 ISPEVLIILLSAHKKFEYVHEAIKEQAFDYLLKPTREEDIKRVFGRALKVLEEKEKNKAL 146 Query: 116 --ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLC 173 E R + + +++ + + D V + + + + L ++S Sbjct: 147 YSEMKRKIKKYGSQITVKAQENSADSSSEIYTDTMDKVIKYVNENYTLEIGLQEISSKFF 206 Query: 174 LSPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVF 232 LSP L + K ++ I+ R++ A LM IS+V++ GYN + YFI VF Sbjct: 207 LSPDYLSTQFKVKTGKNFKDYISNLRIQKAEELLMCSEFKISEVAELMGYNDSGYFIKVF 266 Query: 233 KDFYGMTPLHYVSQHR 248 K+ G TP + R Sbjct: 267 KNKLGCTPSQFRESKR 282 >UniRef50_C0EGN7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGN7_9CLOT Length = 326 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 78/252 (30%), Gaps = 12/252 (4%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII--DVSSLNNTLVAHISHDIIKD 65 ++ + N + I+++ M LLN ++ + + + Sbjct: 77 YELMYVYRGSCVNHFN-ENTITIQEGEMLLLNPNTAHCPETLTDQDCVFNIMFRQNFFQY 135 Query: 66 YLRFL-------NKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERT 118 L L + + A L + + + T Sbjct: 136 SLDLLLKDNTLFSSFFMECMFQSSIARDYLFFLPGKASADTIERLIVECFEKQSCYETIT 195 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 ++LL + + + + + I+ + L V+ S + Sbjct: 196 QSLLVELFAYLARNSDNSFSYPKNNHERLILKIITYIQESPAE-ITLQKVSEQFQYSTAY 254 Query: 179 LKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 L + +K ++S+I+ CR+ A L +I ++ GYN S+F VFK G Sbjct: 255 LSRMIKQYTGKNFSEIVRDCRLTKAKYYLESSSLSILDIALILGYNDVSHFYKVFKQEIG 314 Query: 238 MTPLHYVSQHRE 249 TP Y + Sbjct: 315 CTPTEYRKHYSH 326 >UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC3_DESAD Length = 293 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 102/251 (40%), Gaps = 12/251 (4%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNN-----TLVA 56 +C Q +V + E +I + + ++ +++ + T++ Sbjct: 37 EVCVSQHSLVFVLEGTKYIHSADGDMV-IRKGEAFFCRKGCHLMSEMIPEDGGTFDTVLF 95 Query: 57 HISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKE 116 I+ +++ L+ + +QI RSA + +++ S+ + + Sbjct: 96 FFDDAILGNFVDQLSAEKNQIASTDRSA---FRIKVTEQVSIYLSSMLSLFDSPLGKNDD 152 Query: 117 RTRALLFTVLSRFLDSKKFVSLMMY--MLRNCVSDSVYQIIESDIHKDWNLSMVASCLCL 174 R + +L + + + RN + ++E +K+ +L VA Sbjct: 153 FLRLKVNELLHYIYTASGNDEFVSFLVACRNSSRGDLSAVMERYFNKNISLETVAELSGR 212 Query: 175 SPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 S S K++ K NT+ ++ I RM +A L K+I+++S GY S S+F ++F+ Sbjct: 213 SLSSFKREFKKTFNTTPARWIRERRMSWAEQLLRNSAKSITEISYESGYESLSHFSTLFR 272 Query: 234 DFYGMTPLHYV 244 YG+TP Y Sbjct: 273 KNYGVTPREYR 283 >UniRef50_B1HND5 YbbB, ABC-type Fe3+-hydroxamate transport system, periplasmic component n=2 Tax=Bacillaceae RepID=B1HND5_LYSSC Length = 550 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 12/242 (4%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C +L+ K I L+ AL+ + SS +A + + Sbjct: 39 CTLLIALSHDIRLYVDKMAIDLRQGSCALILPVQSYTVESSNKEAQLARFTFETF----- 93 Query: 69 FLNKDLSQIPVWQRSATPILT--LPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 ++ I + + + P+L L + + M S + L +L Sbjct: 94 ----EVEGITLNRIAHPPLLYGYPYHLLFSQVKQVLGNEAMINNRFSSMAMLQGKLQQLL 149 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS- 185 + + + + + + + Q IE +D + +A+ + +K K Sbjct: 150 AMMVQLDEQANQLQNEEKTQLVQQTVQYIEQHYDEDLTVEQLANMAGMVRWQYSQKFKIL 209 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 + +T R+ A L + + ++++ G+ YF F G TP Y + Sbjct: 210 TGKKPTDYLTQVRINQAKKLLSNSTEPLRKIARQIGFKDEYYFSRCFHKLTGNTPREYTN 269 Query: 246 QH 247 H Sbjct: 270 SH 271 >UniRef50_Q5WIZ4 Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIZ4_BACSK Length = 283 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 87/247 (35%), Gaps = 10/247 (4%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLV---AHISHDIIK 64 I+++ + + L + + ++ + + T+ + ++ Sbjct: 38 HEIIMVHQGTCTFFI-DDCFFELASGDIVIVPGNSIHCSLLDKGKTVTTSALYFCPSLLA 96 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK----ERTRA 120 + + L + ++ F +A + ET E Sbjct: 97 SMIGSESDSLHSLFTTAKTTKQYRYYMEREKQAF-LAGLFDEIAKETAIADLYSGETVAL 155 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 L+ + + + L I++ +H++ +L M+A+ C+ PS Sbjct: 156 LIRYAIVFVSRNCGTAQEKLSPLVPAWIKESLAYIDAHLHEELDLKMLAAHACVHPSYFS 215 Query: 181 KKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 KK K+ +Y + + + R+ A + L +I ++++CGY+S +F F+ G T Sbjct: 216 KKFKASIGLTYIEFLKSKRLVKAKDLLKTTDLSIQAIAEACGYHSMPHFYRTFRAATGTT 275 Query: 240 PLHYVSQ 246 P Y Sbjct: 276 PAAYRKN 282 >UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIW0_CLOPH Length = 300 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 95/242 (39%), Gaps = 14/242 (5%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 +T V KE + +KAN + +LN ++S+ + + + + + ++ Sbjct: 67 EFFYITNGSGQFSVE-KEILDVKANDLIILNPTIVHTEISNPSKPMEYIV---LGIEGIK 122 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 F +D I + + L L + M +E + LL + + Sbjct: 123 FQAEDQGYILLNSSAHKSDLHLYFNSLAH--------EMKSEQPYRNFVCQNLLNIIFTM 174 Query: 129 FL-DSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE- 186 L + +S++ + + IE + ++ + ++S + L+ K + Sbjct: 175 ILRNDAFKISIVSGPKLTRECNIAKKYIEENYQENITIETLSSLVHLNKYYFVHNFKKQF 234 Query: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 TS + R+ +++ L+ ++S +SQ G++S SYF FK +TP Y Sbjct: 235 GTSPINYLIKRRIEESMHLLVSTNHSLSSISQIVGFSSPSYFSQAFKRMTNITPQEYKKM 294 Query: 247 HR 248 ++ Sbjct: 295 YK 296 >UniRef50_C6LL87 Transcriptional regulator, AraC family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LL87_9FIRM Length = 287 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 83/244 (34%), Gaps = 5/244 (2%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK-DYL 67 +++ TE + KE + + + + + + + ++ +S I L Sbjct: 40 ELIMPTESGYSVHCGEKEYVLDEGDIIIICPGVIHELFSPPKGVRIIFLVSLAQIDLQEL 99 Query: 68 RFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLS 127 + +S + P + + +P S + +L V Sbjct: 100 DLVISMISPAILISPEKFPQIHAQIHRLMLEIRDEYFRNLPYTESSIYAKFLEILVLVGR 159 Query: 128 RFLDSKKFVSLMMYMLRNCVSDS---VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 + + + + + + I + +L VAS S + K Sbjct: 160 CYAEIAQHNFEAKNNKQQEYMEKFLFICNYINEHYAEPLSLEEVASLAGFSKYHFTRLFK 219 Query: 185 SE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 +T++ + + R+ +A + L+ ++ +S CG+++ S F+ +F+ G TP Sbjct: 220 QYADTTFYKYLNQKRIAHAKHLLVDKNLSVLDISLQCGFSNLSSFLRMFRKLTGFTPTEL 279 Query: 244 VSQH 247 + Sbjct: 280 RKMY 283 >UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RUC8_9CLOT Length = 479 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 3/162 (1%) Query: 84 ATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYML 143 P L + + ++ + + A + RT + T + + ++ K Sbjct: 314 CHPRHILAAAVSGLVKFDSKQAYLEAVNQMAAARTMHEIRTCIDSYYETCKGRPA--SAG 371 Query: 144 RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSENTSYSQIITTCRMRYA 202 + + +I+ + +L+ VA L ++P L + K + S+ +T+ RM A Sbjct: 372 YSPLIQKALHVIDKSYKEPISLNSVAEQLNITPQYLSRLFMKEMSRSFVDYLTSYRMERA 431 Query: 203 VNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV 244 + L I+ + GY YF ++FK G+TP Y Sbjct: 432 KSLLQDTNMKINMICVQVGYQDAKYFCTLFKKITGVTPNQYR 473 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 115/237 (48%), Gaps = 14/237 (5%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 C V+L + + GK+ + + N + L + + + N I I++ Y+ Sbjct: 4 CYVILVNRPFETEIAGKK-LFFQKNDVLLTDNISQSFFLRHPGNVTELRIDECIVRKYME 62 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESE---KERTRALLFTV 125 ++ + + +++P + +A H++M + + ++ + + F Sbjct: 63 SADRI--------QHSDSAVSVPFIKTTFSHIALLHNVMQNLSLQKTLPQQFSEQMFFAC 114 Query: 126 LSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS 185 LS F + F+ +++ N V+ V II S + W + +++ L +S SLLK+KL+ Sbjct: 115 LSIFSTHRGFM-FLLFRCINSVALKVRYIICSSPSRAWRVKDISNSLYMSESLLKRKLQE 173 Query: 186 ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 E S+SQI+ RM A + +++Q++ CGY ST YFISVF++++G+TP Sbjct: 174 EKVSFSQILLDIRMHNARQLI-SSKLSVNQIAIRCGYASTPYFISVFREYFGITPHQ 229 >UniRef50_Q2RJ70 Transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJ70_MOOTA Length = 440 Score = 139 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 78/216 (36%), Gaps = 14/216 (6%) Query: 46 DVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRV----- 100 D+S + N + I I + L + + QI + + ++ L F + Sbjct: 220 DLSKIGNQIFMEIRRSDIDKAKKLLEQLVLQIFIQSKGQLEVIKGRSLELLSFLIRTSTE 279 Query: 101 -------AAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQ 153 S + E + + +L+ + ++ + D V + Sbjct: 280 YGVKFGEVIHLSDLKLREIDEADTVEKAVLWLLAVGNAFIELIAERNSSEGEGIIDRVVE 339 Query: 154 IIESDIH-KDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGK 211 I+ + + ++ +A LSP+ L + K S ++ I R+ A L + Sbjct: 340 YIQKNYSSESLSVKEIARASYLSPAYLGQLFKKKMGYSLTEHINKVRIEQAKLLLRQTEQ 399 Query: 212 NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 I V+ G+ SYF VFK G++P Y ++ Sbjct: 400 TIESVAIQTGFKERSYFCKVFKKITGLSPNEYRRKN 435 >UniRef50_B2TRB4 Transcriptional regulator, AraC family n=5 Tax=Clostridium RepID=B2TRB4_CLOBB Length = 305 Score = 139 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 91/267 (34%), Gaps = 20/267 (7%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 DQ ++ + + + + ++ + + + + + E + I + ++ Sbjct: 38 HDQLELIHMKKGEFQVEIDMDKHVVHEETICFINSEELHFIKSNHPCKESAIVFDLKMLS 97 Query: 65 ----------DYLRFLNKDLSQIPVW---QRSATPILTLPCLTPDVFRVAAQHSMMPAET 111 LN +L + IL + ++++ Q S P Sbjct: 98 FDMFDSIQGSLIQPLLNGELKMPHFIFKKDKHGEEILKEYSEILEAYKISGQISQNPEGN 157 Query: 112 ESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSV------YQIIESDIHKDWNL 165 +EK ++ + L + L +L++ V I+++ + ++ Sbjct: 158 ITEKLSSQIKIKASLLKILAILYENNLLIKENNKNKDYRVEYIKTAISYIQNNYSEKIHI 217 Query: 166 SMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNS 224 ++ + ++ + K + + + R++ A L + + + CG+++ Sbjct: 218 KDLSKQINMNEQYFCRFFKRMIGKTPMEYVNEYRIKKAKELLRETNRQVMDICLECGFHN 277 Query: 225 TSYFISVFKDFYGMTPLHYVSQHRERT 251 FI VFK G+ P+ Y + Sbjct: 278 MGNFIKVFKKHTGINPMKYRKNFINKK 304 >UniRef50_UPI0001C3766F two-component response regulator n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3766F Length = 286 Score = 139 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 81/247 (32%), Gaps = 10/247 (4%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 +++ + V+G L + ++ + ++ + +I + Sbjct: 40 EVIIPLHNGFTV-VSGGVEYHLSEKEIIVIPPGELHSMPAQDGRRIIFQCDNSVISEVPS 98 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 + + + TP L + ++ ++ R L T+L+ Sbjct: 99 L--ESILPVFSSAVHITPSLNKELYVLARKNILDIYTEYYSKAPMADVRIYMYLITILTA 156 Query: 129 FLD------SKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 + + S + V + I + + L +AS S + Sbjct: 157 IREFQLNSADENSASAAENSDESRKFGLVTKYINQNYMYELPLEKLASIAGYSKYHFSRI 216 Query: 183 LKSEN-TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 K N SY Q I + R++ A + I++V+ CG++S + F F+ G TP Sbjct: 217 FKKYNNMSYIQYINSKRIKAAERLMADSSLPITEVAMQCGFSSLTTFNRAFRKAKGCTPT 276 Query: 242 HYVSQHR 248 + + Sbjct: 277 EFRKLFK 283 >UniRef50_Q71VU1 Transcriptional regulator, AraC family n=21 Tax=Listeria RepID=Q71VU1_LISMF Length = 780 Score = 139 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 96/244 (39%), Gaps = 4/244 (1%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLV-AHISHDIIKDYLR 68 +V + I+V+ ++ L+ + +L+ + +N + IS Y Sbjct: 27 LVFAISGQITIKVSEQKFY-LQEGDVLVLDRNTFYTIEGNEDNLFINLTISDTFFAHYYE 85 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 + + + + L V + + + E + + +L+R Sbjct: 86 DYFQHSFKFFSKESDPGRERVVGSLRKSVSELLIASATKKRANKLEAQSALFQILLLLTR 145 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-N 187 FL K S + + + + +E + +L A LS + L + K Sbjct: 146 FL-KKGIPSSARKEVNDKRISRIIREVEERFDEALSLREFAQKEFLSEAYLSRYFKKTTG 204 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 + Q +T R+++A+ +L+ ++I++++ G++S +F VFK + +TP Y ++H Sbjct: 205 LGFLQYLTEVRLKHAIQDLLHSAESITEIALKNGFSSQKHFSEVFKFHFELTPSEYRAEH 264 Query: 248 RERT 251 T Sbjct: 265 HVET 268 >UniRef50_C4Z3B4 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z3B4_EUBE2 Length = 291 Score = 139 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 89/254 (35%), Gaps = 16/254 (6%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHI------ 58 ++ ++ + + + + V+ + + + + ++ + I + ++ +I Sbjct: 41 HNEMELIYIKKGCMIVSVDLEYSVVNAGDIVVVMPGHIHSIIQNESDSCEYENILFNLDM 100 Query: 59 ------SHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETE 112 +D + + + PV ++A L + + P Sbjct: 101 LVSRQCDYDTVSFFNGIAGFNGYCPPVISKTAPHYSDLIHYIDEADNI---CKYFPDGYR 157 Query: 113 SEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 + F L+ + + + + + V IE + + ++ +A Sbjct: 158 LKIRACLFNFFFELNAHFYTHTDMPVHLSDDKMDKLKLVLNYIEKNFARAISIEEIAQWC 217 Query: 173 CLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 S S K K+ TS+ + R+ A L + + V+ CG+++ SYF Sbjct: 218 HFSQSHFMKFFKNCTGTSFITYLNDYRLIIAARILKTTTQPVIIVASDCGFDNISYFNRK 277 Query: 232 FKDFYGMTPLHYVS 245 FK+ YG++P + Sbjct: 278 FKEKYGVSPREFRK 291 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 139 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 5/203 (2%) Query: 47 VSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSM 106 + + L +I +DI ++ N I W ++T + Sbjct: 163 IKRGDKDLALNIFNDIWNEFHD-KNYTEDFIKRWGLGLVAVITRSFI-EIGENADILFKE 220 Query: 107 MPAETESEKERTRALLFTVLSRFLDS-KKFVSLMMYMLRNCVSDSVYQIIESDIHK-DWN 164 + + T+ + ++ ++VSL + D ++I+ + + + Sbjct: 221 TDPWRQISELSTKEKFREWMRNIIEVVCEYVSLTKNSKNRKLIDEAIKLIQENYSDLNIS 280 Query: 165 LSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYN 223 L+ +A L ++P+ L KSE ++S +T CR+ A L I +V+++ GY Sbjct: 281 LNSIAEKLYITPNYLSTLFKSEMGVTFSDYLTACRIEKAKELLKDVKVKIYEVAEAVGYT 340 Query: 224 STSYFISVFKDFYGMTPLHYVSQ 246 YF VFK+ G TP Y + Sbjct: 341 DQHYFSKVFKNITGFTPKEYREK 363 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 139 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 104/255 (40%), Gaps = 11/255 (4%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII------DVSSLNNTLVAHISH 60 + ++ + V + I ++++ ++ + + V +S Sbjct: 20 ESAMIAMLTGAKGNIVINGQSIEIESDVTLIIPKYSQVSCNIVCNTVKQPLELHTLSMSA 79 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKER--- 117 + ++ L K L + S PI + + +P + +S + Sbjct: 80 EELQAVF-LLLKTLMKSGAPLTSHQPIYHISPPETVRDNFSLLKQCLPLKKQSASQEALL 138 Query: 118 -TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSP 176 ++L F +++ + + ++L + + ++ +I + K W+L VA L +P Sbjct: 139 MKQSLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDDVAKALFTTP 198 Query: 177 SLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 S L++ L E S+ Q++ RM A+N L ++ Q+S CG+ S +YF VFK Y Sbjct: 199 STLRRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAYFCDVFKRKY 258 Query: 237 GMTPLHYVSQHRERT 251 MTP + Q R+ Sbjct: 259 NMTPSQFRLQSRQSN 273 >UniRef50_C6QSM7 Transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QSM7_9BACI Length = 550 Score = 139 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 31/253 (12%), Positives = 78/253 (30%), Gaps = 6/253 (2%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 ++ ++++ + ++ E E I+ + + D Sbjct: 41 QLTVSHV-LIVVKSGQGRLTLDHDEYQLRPDTVYVCAPGETYGIEAEKASQLKLFLFKFD 99 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 + + + + + + V A + +E E+ ++ Sbjct: 100 VFQVTEQGYERVQGIKKERLFPLKGEIQISPAGQLVSLCDAIYDHWRSEDGLERFYSQFA 159 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 +L + +++ + + + +E +++ + +A +SP Sbjct: 160 FQELLYYIMKNRRLQAKESRTS----LELAKEYMERYFNENLTIEQLARIANISPKYFVD 215 Query: 182 KLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K S +T R+ A + + ++ GYN YF FK G+TP Sbjct: 216 LFKKTYGISAIDYLTELRINKAKQLMAQSDAKLRDIAHQVGYNDEFYFSRKFKKKVGVTP 275 Query: 241 LHYVSQHRERTVA 253 Y+ R + A Sbjct: 276 TVYMKSRRRKIAA 288 >UniRef50_Q5WK82 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK82_BACSK Length = 297 Score = 139 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 90/239 (37%), Gaps = 11/239 (4%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLN-CENNIIDVSSLNNTLVAHISHDIIKDYLR 68 I T + GKE ++ + +++ ++ + I L+ Sbjct: 55 IFQYTIAGSGVLEIGKERYTVGQHQAFIVSVPSDHRYYYPENAKEPW-----EFIYISLQ 109 Query: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 + + Q+S PI++LP +P + + + ++ A+ + + L Sbjct: 110 GASVQDIWQRLIQKSG-PIVSLPPNSPLIRSLYSIYADTKADGLRDPYLAATQGYQFL-- 166 Query: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-N 187 ++ + ++ IE+ H+ L +A + +S L + K + + Sbjct: 167 -IECFRAMAEERPQNEPYHYQRALAYIEAHYHEQICLDNIAEEVGVSRYTLTRLFKKQLH 225 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 T+ +T RMR A + L+ + I Q++ GY +YF VF+ + G + + Sbjct: 226 TTPISYVTDLRMRKACSLLLHTNRTIKQIAADVGYPDDNYFHKVFRRYTGSSATQFRRN 284 >UniRef50_C3RN82 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RN82_9MOLU Length = 267 Score = 139 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 79/246 (32%), Gaps = 16/246 (6%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII---DVSSLNNTLVAHISHDIIK 64 + VN + +KA L+ D L + Sbjct: 18 YLLHYCLSGQGEYHVNNQ-VYQIKAGDAFLIMPNVVTYYQADQHEPWTYLWISFDGSKTR 76 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 YL+ N ++ + A + + S + + L+T Sbjct: 77 QYLKRCN---------LDEHNLVVHCDYINELRETTIAILAH-NKLSYSNELFIQGQLYT 126 Query: 125 VLSRFLDSKKFV-SLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 S S + + N D + I+++ + ++ +A L L+ S L Sbjct: 127 FFSFLAKSANITYNDNVAPNYNPYVDKAIEYIQNNYQEMVTVNEIADYLSLNRSYLTTLF 186 Query: 184 KSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K + S + + RM A + L I+Q++ SCGY++ F F + + M P Sbjct: 187 KKHLHLSPQEFLLKYRMMRAEDLLTNTDLTINQIAFSCGYSNQLSFSKAFSNSHQMAPRD 246 Query: 243 YVSQHR 248 Y Q + Sbjct: 247 YRKQFK 252 >UniRef50_C6CRZ9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRZ9_PAESJ Length = 501 Score = 139 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 12/208 (5%) Query: 52 NTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLT--PDVFRVAAQHSMMPA 109 N +++ I ++ + K Q Q + L + + V S Sbjct: 294 NEIMSLIISGDLQALHDYFEKVGGQAGSLQLTDGKFLVINHSLALDQISEVLGLFSHQGK 353 Query: 110 ETESEKERTRAL-----LFTVLSRFLDSKKFVSLMMYMLRNCV---SDSVYQIIESDI-H 160 ES + L L + + N IE Sbjct: 354 SAESLLQTIDQLPGSMELKSWFKAACQDFETRLDRWKQQANPYVNSIQQAIDYIEEHYLD 413 Query: 161 KDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQS 219 D ++ VA + L+PS L K E +++ + +++ A L IS++ Q+ Sbjct: 414 SDLSIKQVAENIHLNPSYLSTLFKKETGETFTGYVNKLKLQKAQVLLRNTDMKISEICQT 473 Query: 220 CGYNSTSYFISVFKDFYGMTPLHYVSQH 247 G+ ++YF SVFK + ++P + H Sbjct: 474 VGFEDSTYFSSVFKKHFQISPSEFRQNH 501 >UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIX4_BACSK Length = 765 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 8/152 (5%) Query: 100 VAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDI 159 + + +P++ + + L+ +LS F + +S+ + I Sbjct: 621 LYQECLTIPSQEQMKNWFVSRLIDPLLSAF-------KQVSESQFQHLSEKMIDYIHQHY 673 Query: 160 HKDWNLSMVASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQ 218 H+ L A+ L + + L K ++S+ + R++ A L + + +++ Sbjct: 674 HQAVTLEQCAADLHYNANYLSSVFKEGTAMTFSEYLAQYRLKKAKEWLAKTSEPVKTIAE 733 Query: 219 SCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 GYN++ FI FK GMTP Y Q + + Sbjct: 734 KLGYNNSQNFIRSFKKMTGMTPGQYRQQKQLK 765 >UniRef50_A6LR84 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=A6LR84_CLOB8 Length = 285 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 95/249 (38%), Gaps = 13/249 (5%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 + + ++R N K ++ + ++N + S N+ I D+ Sbjct: 38 HEHLQVFYFINGKGFLRCNTKS-FNIIQGDVIIINSRDLHYLESLNNDLRFYLIRIDLPF 96 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESE--------KE 116 + + DL Q + ++ L + + + E + K Sbjct: 97 LFSDQV--DLCQTKYLSPLSENLILFKNLIRNDDEIVRCIKTIIKEYNKKEIGYELAVKA 154 Query: 117 RTRALLFTVLSRFLDS-KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 L+ ++ ++D L + + V++ + S+ +K + +++ +S Sbjct: 155 NLYNLVVLLIRNYIDKFVTKRQLAFKINNDERFYKVFEFVHSNFNKKISTLNLSNIAHVS 214 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 P + K + ++ I R++ ++ L NI++V+ +CG+N +YF +FK Sbjct: 215 PYYFCRIFKQITGKTTTEYINEVRLKKSIELLKNSNMNITEVAINCGFNDVNYFSRLFKK 274 Query: 235 FYGMTPLHY 243 YG++P + Sbjct: 275 KYGVSPTKF 283 >UniRef50_A8SS64 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SS64_9FIRM Length = 328 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 87/244 (35%), Gaps = 9/244 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIK 64 + ++ + +K + G + L+A ++ I + ++ Sbjct: 72 VRESYVIHIVKKGKGVFTIGGKSYELEAGQAFIIRPGEETIYKADDDDPWSYMW-----V 126 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTP--DVFRVAAQHSMMPAETESEKERTRALL 122 + + +D + +++ +PI+ + + ++S + E +++ +L Sbjct: 127 GFHGYRAEDFIESMGYKKD-SPIIKIEQMDTCATCINNMLEYSQITRINEVKRQSALMML 185 Query: 123 FTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKK 182 F + S + + + + I + +A + +S S L Sbjct: 186 FATIMEDNTSGQQENDNVEYPSKIYVKAAVDFITEKYMNKIKIDDIADFIGISRSHLTGS 245 Query: 183 LKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPL 241 K E S + + R+ A + L + I+ ++ CGY + F FK +GM+P Sbjct: 246 FKKEMGVSPQEYLINFRLEKAASLLRSSKEQINIIAYQCGYEDSLSFSKAFKQKFGMSPK 305 Query: 242 HYVS 245 + + Sbjct: 306 SFRN 309 >UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K9C1_BACHD Length = 510 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 3/165 (1%) Query: 87 ILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNC 146 I+ + L DV + + A + K A +FL+ K + + + Sbjct: 343 IVLMGNLKYDVKELEREKYHYFATINAAKNVREAT--DCFYQFLEVTKQIISVYSNEGSS 400 Query: 147 VSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNE 205 + IE + +LS +A+ +PS L + + +S+ + R+R A Sbjct: 401 SIQKMLAYIEEHHSEPLSLSQLANYFHFNPSYLSAYFRQHHDEGFSEYLNKVRIRKAKEW 460 Query: 206 LMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 L IS++ GY+ SYF VFK GM P Y ++ E Sbjct: 461 LKSSTIPISEIYALVGYSDHSYFCKVFKKRTGMPPSRYRRENAEH 505 >UniRef50_UPI0001789C32 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C32 Length = 297 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 29/256 (11%), Positives = 78/256 (30%), Gaps = 14/256 (5%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAH---ISHD 61 D ++ + + G E + + + +N + + + + Sbjct: 38 HDDLELIYFIRGNATFYI-GSETVKPEPGDLMFVNKGMIHTGFADDEHQVEYYALVFHSV 96 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 + + + + P + LP +A M AE E + + Sbjct: 97 LAESRVAGSSHVQITNPYASGKRFFPILLPVTDAYNSLIAGIVKQMIAEYEQQAIGYQVA 156 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRN---------CVSDSVYQIIESDIHKDWNLSMVASCL 172 + ++L L + + + +E + + A + Sbjct: 157 IQSMLHLLLVHLSRHHHLHGPTGSADTVGAELTDRFKELIAFVERHYPEKLTVQQAAGIV 216 Query: 173 CLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 LS + K ++ + + R+ A L+ I++++ G+ S +YF + Sbjct: 217 NLSEYHFCRTFKKVTGKTFVEYVNLLRINAAEQLLIHSSDPITEIAFKVGFGSVNYFSQM 276 Query: 232 FKDFYGMTPLHYVSQH 247 F+ + +P ++ Sbjct: 277 FRQYKRHSPSQCRKRY 292 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 6/197 (3%) Query: 56 AHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEK 115 H+ I + L + + + I + + H ++ E K Sbjct: 302 IHLIKSEIGAMFKLLFEYEADPEYVRYIGFVIFSDIYRQHESVGSQMYHDLLH---ELNK 358 Query: 116 ERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 + A + VL L++ ++ ++ N V QI+ D +D +S +A L ++ Sbjct: 359 CDSIAEIREVLHHALEATRYDQVLK--QHNPNIQKVLQIVLKDYAQDITISSIADTLHMN 416 Query: 176 PSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 L + K E N S+SQ + R++ A N L+ NI+++++ GY S+ YF FK Sbjct: 417 AMYLGQLFKKETNKSFSQYLNHFRIKEAQNLLLKSNHNINEIAELVGYTSSGYFYKNFKK 476 Query: 235 FYGMTPLHYVSQHRERT 251 G++P Y ++ ++ Sbjct: 477 ECGISPKEYRERYLKQP 493 >UniRef50_C9B1F2 Transcriptional regulator n=4 Tax=Enterococcus RepID=C9B1F2_ENTCA Length = 278 Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 8/243 (3%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 D I +L E + + ++A + L N + ++ T + + Sbjct: 31 HHDFLEISVLLEGESTYYFEKEPAKKIRAGSVMLFNPGVDHCEL-QPKGTRSHQLHIGLK 89 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 L ++ + +++ + S E + ++ + Sbjct: 90 NISLEGFKRNFFPNKHPLLELGKY--HHQVLEKAWQLVRESSEERDEFQLMQKAVLMEML 147 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQI----IESDIHKDWNLSMVASCLCLSPSLL 179 + R L+ L + +E+ ++ L +A LSP+ L Sbjct: 148 VYILRGLNEDHINVLPYLSKSQRRQQQIVNYTVYYLENHYKEEITLEKLAQDQFLSPTYL 207 Query: 180 KKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGM 238 K K S + R++ A + L + I +V+ + GY +F FK YG+ Sbjct: 208 SKIFKEATGVSPINYLIEIRLKRAKDMLKNENLTIKEVASAVGYQDAYHFSKSFKKLYGV 267 Query: 239 TPL 241 +P Sbjct: 268 SPS 270 >UniRef50_C9KN97 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN97_9FIRM Length = 281 Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 6/240 (2%) Query: 11 VLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRFL 70 +L + I + + + + L+ ++ + D SS N ++ S I L Sbjct: 46 FILITEGSGIHIIDGQRYYTQKGDLLLI-GQDVVHDESSPANRNLSIYSGAIRGLQLP-- 102 Query: 71 NKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFL 130 +L P+L L PD + E + L L + Sbjct: 103 --NLPAGKFLPPDVLPVLKTEGLFPDFCHLLEFMYRGAQGKGCHPEESINHLLCALLLLV 160 Query: 131 DSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKS-ENTS 189 S+++ + + V +++ + L+ +A +S L K+ + Sbjct: 161 MEVTSRSVVLPPEEHHLLAGVRSRLDAAYDETITLAGLAQEFHVSTFHLAHAFKAAYGYA 220 Query: 190 YSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 Q IT R+ A L+ I++++ GYNS+SYF F GM+P Y +R+ Sbjct: 221 PLQYITRRRIGEAQTLLIDTALPITEIAIRTGYNSSSYFNKAFHKITGMSPRDYRKTYRK 280 >UniRef50_A7M0D3 Sensor protein n=1 Tax=Bacteroides ovatus ATCC 8483 RepID=A7M0D3_BACOV Length = 1353 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 104/259 (40%), Gaps = 21/259 (8%) Query: 3 ICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDI 62 + SD+ I+++ + + R ++ I +L + + I D+ Sbjct: 1095 VYSDRKTILIVEDNVEFRRFLVEQLI----GQFNILEAGDGAEGEEVAIHKSPDLIISDM 1150 Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 + + L + Q S PI+ L D R+ + + A++ K +L Sbjct: 1151 MMPKVDGLEMCVRIKNNIQTSHIPIILLTARISDEARIESYKAG--ADSYISKPFNYDIL 1208 Query: 123 FTVLSRFLDSKKFVSLMMY-------------MLRNCVSDSVYQIIESDIHK-DWNLSMV 168 T ++ L+ ++ + + L + +++E ++ +++++ + Sbjct: 1209 LTRINMLLEQQEKRKEIFHKEIEISPQNITITSLDEEFVEKALRLVEENMENPEFSVNNL 1268 Query: 169 ASCLCLSPSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSY 227 L +S S L +K +S + + I + R++ A L NIS++S G+NS Y Sbjct: 1269 CDDLGMSRSQLYRKFESITGLTPNDFIRSVRLKRAAQLLRGSSYNISEISDRVGFNSIKY 1328 Query: 228 FISVFKDFYGMTPLHYVSQ 246 F FK+ +G TP Y S Sbjct: 1329 FNKYFKEEFGFTPTQYRSN 1347 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 131 DSKKFVSLMMYMLRNCVSDSVYQIIESDIHK-DWNLSMVASCLCLSPSLLKKKLKSE-NT 188 K ++ + + Q I+ + D L VA L +SP L + +K E Sbjct: 279 YEKCKEQMVEESRLSPIVRRARQYIQKHFSQSDLTLESVAEFLNVSPVYLSRMIKQELGI 338 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVS 245 S+ ++T RM A L+ I ++++ GY++ YF + FK G++P Y Sbjct: 339 SFIHLLTKIRMEKAAELLLSTELPIHEIAERVGYDTQHYFSTAFKKAMGVSPNQYRR 395 >UniRef50_C0EDX0 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDX0_9CLOT Length = 360 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 91/256 (35%), Gaps = 13/256 (5%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHI--SHDI 62 D ++ + V V+ +E +++ + H+ L+N + + + +T+ +I Sbjct: 99 HDFFELLYVYRGSVVNVVHRQERVTVDSKHVLLMNPNSRHLPLCDELDTIAFNIMLRRSF 158 Query: 63 IKD---YLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTR 119 I++ L N + + + P + + E EK Sbjct: 159 IEETVLNLIGGNNFVYHFFLHSIYGENEMRDYLFLPVNDEIVGHIHSIIREHCEEKPFYE 218 Query: 120 ALLFTVLSRFLDSKKFVSLMMYMLRNCVS------DSVYQIIESDIHKDWNLSMVASCLC 173 +L + L L + L + + + I+ L VA Sbjct: 219 QMLVSNLILLLGEFARIQKQETDLESERLVGSGKLTDMLRYIQLHYAT-VTLQSVAEHFS 277 Query: 174 LSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVF 232 S + L + +K E S+S+I++ R A N L I ++S GY + F F Sbjct: 278 YSDAYLSRLIKKETGKSFSEIVSGIRFHTACNYLKHSTLTIEKISDIVGYQNVGNFFRAF 337 Query: 233 KDFYGMTPLHYVSQHR 248 K G++P Y Q++ Sbjct: 338 KKNCGVSPSDYRKQNQ 353 >UniRef50_C0EDY4 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDY4_9CLOT Length = 345 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 14/262 (5%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNC--ENNIIDVSSLNNTLVAHISHD 61 D + + + + G + I + + LL+ ++ SS + I + Sbjct: 84 NHDFFEMSYVYKGTFH-NIIGGQQIDQPEDSLVLLSPQAKHRCFTRSSEDLVFNILIKRE 142 Query: 62 IIKDYLRFLNKDLSQIPVWQ-------RSATPILTLPCLTPDVFRVAAQHSMMPAETESE 114 +I+ + + + + R P L C + + + + Sbjct: 143 LIEKIFVQMLSESESVCRFFLDSLYNVRQKQPYLFFSCDNALTELIHSIIEEYFQQQDFY 202 Query: 115 KERTRALLFTVLSRF--LDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCL 172 + +A L + S+ L K + + IE LS +A Sbjct: 203 QSIIQAKLIELFSKLSRLHQKNAEETPAETSNFQLILQIEDYIERHYST-VTLSSIAEHF 261 Query: 173 CLSPSLLKKKL-KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 +PS L + + K N +S ++ R+++A L I QV + GYN S+F V Sbjct: 262 NYTPSYLSRLIQKQFNQKFSCLVQDIRLKHACRYLAHSSLPIDQVVEIVGYNDVSHFYRV 321 Query: 232 FKDFYGMTPLHYVSQHRERTVA 253 FK + ++P Y H R A Sbjct: 322 FKQKHNVSPNQYRKSHALRPAA 343 >UniRef50_Q0TS97 Transcriptional regulator, AraC family n=6 Tax=Clostridium RepID=Q0TS97_CLOP1 Length = 285 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 82/252 (32%), Gaps = 4/252 (1%) Query: 1 MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH 60 M C ++ + +I KE I K N + ++ + + Sbjct: 33 MPYHWHTECEIIRILEGEFILFIDKEKILAKKNDIIFVHSGIFHGGLPNDCIYECIVFDM 92 Query: 61 DIIKDYLRFLNKDLSQIPVWQR---SATPILTLPCLTPDVFRVAAQHSMMPAETESEKER 117 ++ K + I + P A + Sbjct: 93 KLLLKDNNACTKQIYDIVNHNKVIAHKLPSNVQALNNCCTSLFEAMRVKSTGYEFIAQGA 152 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 L+ T+L L K R +V +IE++ L ++ +SP Sbjct: 153 LYYLIGTILENQLYVKNNKYTKKTKERFLQLKNVITLIENEYQNPLTLEDLSKASGMSPK 212 Query: 178 LLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 + N + + + R+ + +L+ +I++++ +CG+N SYFI FK Sbjct: 213 YFCRFFHEMINKTPIEYLNYYRIEISCEKLLATELSITEIALNCGFNDVSYFIKTFKKHK 272 Query: 237 GMTPLHYVSQHR 248 G+TP Y+ + Sbjct: 273 GVTPKQYLKSLK 284 >UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=Clostridiales RepID=C5EPF6_9FIRM Length = 550 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 2/139 (1%) Query: 114 EKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIH-KDWNLSMVASCL 172 E AL +++ F + + V + I + ++ +L+ VA+ + Sbjct: 411 ESHSITALKESLIRLFEGTMLLRDSQTASKYSQVLEEARAFIRENYAKEEISLNTVAARV 470 Query: 173 CLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISV 231 +SPS E ++ + +T RM A LM +++ GY + YF + Sbjct: 471 NISPSYFSSIFSQEMGVTFVEYLTGVRMERAKELLMCSNMKTTEIGYEVGYKDSHYFGYL 530 Query: 232 FKDFYGMTPLHYVSQHRER 250 FK G TP Y + RER Sbjct: 531 FKKTVGCTPKEYRAGSRER 549 >UniRef50_C6D490 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D490_PAESJ Length = 527 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 67/192 (34%), Gaps = 6/192 (3%) Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHS----MMPAETESEKE 116 II+D R + P + + L + FR Q+ + + + Sbjct: 332 SIIRDIFRKMEARSGMSPTDLQLQCLNILLSSVRKMSFRQLQQNDFLGRHILSLEGMSRF 391 Query: 117 RTRALLFTVLSRFLDSKKFVSLMMY-MLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 +T L +++ + + + V + + + L+ +++ +S Sbjct: 392 QTLESLEEWMAQVIRKIIVFKQEHNIPKKKDIIAEVKEYVAEHYSEPITLADLSARFFIS 451 Query: 176 PSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 P L + K +Y +T R+ A L + +V Q GY+ T +F +F+ Sbjct: 452 PYYLSQFFKQKTGDTYVNFLTRIRINKAKELLERTDLKVYEVCQMVGYSDTQHFARMFEK 511 Query: 235 FYGMTPLHYVSQ 246 G P Y + Sbjct: 512 LTGYKPRDYRKR 523 >UniRef50_A8VZY4 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZY4_9BACI Length = 524 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 5/243 (2%) Query: 12 LLTEKDVWIRVNGKEPISLKANHMALLNCENNII-DVSSLNNTLVAHISHDIIKDYLRFL 70 LL +K G I L+ + + N++I D +L + V D I + L Sbjct: 276 LLFKKQNGYFTRGSLLILLQTLQPEVCHPVNHVIQDSLNLASQAVMDDDTDRINQAMALL 335 Query: 71 NKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRFL 130 + + V L ++ + +HS + ++ T + + + L Sbjct: 336 LDQVYDMRVHPEEIEERLIKMVYQLEIKK-GTEHSDVHFAKRLKQSVTFEEAWIMTRQKL 394 Query: 131 DSKKFVSLMMYML--RNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL-KSEN 187 S + V +L + + I S +H+ + VA L L+ S + K+ Sbjct: 395 HSLQTVPESSQVLPVDTSKLKRIDEYISSHLHESITSTDVAKALYLNSSYFSRYFRKATG 454 Query: 188 TSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 ++ + +++ A + L ++I ++ G+ +YF VFK + GMTP + ++ Sbjct: 455 KRFTDYVYEYKIKIARDYLKYSNESIEEIGAELGFTERTYFSKVFKKYTGMTPSEFRTKT 514 Query: 248 RER 250 + Sbjct: 515 QSN 517 >UniRef50_D1N277 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N277_9BACT Length = 315 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 93/249 (37%), Gaps = 5/249 (2%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALL-NCENNIIDVSSLNNTLVAHISH 60 + + + + + + + L+ + LL E++ + S + Sbjct: 48 QYHKHNFYELAVVLRGAGTHLTDSQKLPLRPGSVFLLHPGESHAYEYSEPLTLMNFMFDS 107 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKE--RT 118 I++ Y + L+ L+ P+ A L + + + M E+ Sbjct: 108 QILRPYRKSLSG-LAGYPLLFCPAEERRELCVDSATLAELDILLHAMAMESRQRSAGAEL 166 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 + + L +K S + N + + ++ +L +A LS S Sbjct: 167 LLISHLLNLLVLVLRKSCSYVERERFNSDIGIAVAFMRRNYQEEISLPKLARLANLSESS 226 Query: 179 LKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 +K + E TS Q + R+R A+ L+ NI +++ + G++ + YF F+ G Sbjct: 227 FFRKFREEMKTSPMQWLLNLRIRKAMEFLIRSDMNIGEIAAATGFSDSLYFSRQFRRQVG 286 Query: 238 MTPLHYVSQ 246 ++P +Y SQ Sbjct: 287 VSPKNYRSQ 295 >UniRef50_C4L2Y3 Two component transcriptional regulator, AraC family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L2Y3_EXISA Length = 236 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 8/191 (4%) Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLT-PDVFRVAAQHSMMPAETESEKERTRA 120 +I ++ + D ++ W L LT D + + + K Sbjct: 51 LILSDIQMPHCDGIELMEWVHDHASFSKLVVLTGYDEYSYMRRAIQYGSFDYLLKPIDPD 110 Query: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 +L LSR L ++ + IE ++ +L ++ LS + Sbjct: 111 VLNDTLSRALAD------VVKESSEDPIAQIGTYIEQHFAEELSLQGMSERFYLSREYIS 164 Query: 181 KKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 ++ K + S+ + T RM A L + I +V+Q+ G++ YF VFK G+T Sbjct: 165 RRFKQQYGVNLSEYVLTIRMNEAKRLLETSRQRIYEVAQAVGFSDDKYFRKVFKKQVGVT 224 Query: 240 PLHYVSQHRER 250 P + Q + + Sbjct: 225 PNEFREQVQRQ 235 >UniRef50_C6LKL3 Putative response regulator receiver domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LKL3_9FIRM Length = 538 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 5/190 (2%) Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPILTL-PCLTPDVFRV-AAQHSMMPAETESEKERT 118 DI+ + L+++ Q+ Q +A+ IL L L PD +V A MP +S T Sbjct: 343 DILDNIAELLSQNRVQLAQAQDAASSILHLAIHLLPDGEQVTARIFQDMPDGYQSLYRFT 402 Query: 119 RA-LLFTVLSRFLDS-KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSP 176 + T L D +F+S N + ++V + I S+I K L A +SP Sbjct: 403 DTRQIVTWLRTLEDGLIRFLSEQRKSNVNFMVENVTKYIASNIDKRLTLHDTALTFNISP 462 Query: 177 SLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDF 235 + L + K N +++ +T ++ A L + +++ G+ + YF VFK + Sbjct: 463 NYLSQLFKKYRNVGFNEYVTQQKINAAKELLQQGSLRVYEIADRLGFENAFYFSKVFKKY 522 Query: 236 YGMTPLHYVS 245 G +P Y++ Sbjct: 523 EGCSPREYIN 532 >UniRef50_C6J7M7 Response regulator n=2 Tax=Bacillales RepID=C6J7M7_9BACL Length = 531 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 3/186 (1%) Query: 63 IKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALL 122 + + ++L + +R + + + + ++ S+ E + T + + Sbjct: 343 LDETKQYLEEQAFSKEAAERMIVELTVVMFRQYEQMHLLSEWSLEGLLQELQSLGTLSEM 402 Query: 123 FTVLSRFLDSKKFVSLMMYMLRN--CVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 +L S + N V + I S+ HKD ++ VA LS S Sbjct: 403 IGLLKANFGRWISESRESQIKDNVQNVIAKTQEYILSNYHKDLSMEEVAERADLSISHFC 462 Query: 181 KKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMT 239 K ++ + +T CR+ A L + QV+ GY YF VFK GMT Sbjct: 463 LLFKQVTGYTFLEYLTECRIEKAKYILKNSQVKVYQVAPMVGYQDPRYFTQVFKKVTGMT 522 Query: 240 PLHYVS 245 P Y Sbjct: 523 PTEYRE 528 >UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonella morbi ATCC 51271 RepID=C4FUL3_9FIRM Length = 277 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 76/246 (30%), Gaps = 8/246 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGK-EPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 + + N + E I L L+ + ++ Sbjct: 38 THNYLFHYILSGRGSFLENERHEAIQLGPGQGFLMPPNTVCSYTADQDDPWTYCWIEFNG 97 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 F+ + + + + + + + HS + E L Sbjct: 98 LKAANFMRQAGLNANNLIFTPHKPMIISSIKDTLETIIRNHS------QHESFLIAQLYL 151 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 V SK + + I+ + ++ +A L+ + + Sbjct: 152 LVDHLIRFSKHSPQQRPNEIHSFYIREAIHYIQDHYMDNPSVDQLADICHLNRNYFTRLF 211 Query: 184 KSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K E + + SQ I T R+ + L ++I ++ GY++ F S FK GMTP+ Sbjct: 212 KQELHMTPSQFILTYRINQSCELLASTNRSIRDIADQIGYSNQFNFSSAFKRVKGMTPME 271 Query: 243 YVSQHR 248 + ++R Sbjct: 272 WRRRYR 277 >UniRef50_C0BFD5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0BFD5_9FIRM Length = 305 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 90/241 (37%), Gaps = 8/241 (3%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRF 69 I+ K I G+ LK L+ E+ + + S+ + Sbjct: 42 ILHYVMKGKGIYQVGETKYPLKEGQAFLIEPESLTFYQADKTDP----WSYLWVGFGGTE 97 Query: 70 LNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSRF 129 + + + + R T ++ H+ AE + F+VL+R Sbjct: 98 AQRFVRDLGLNSRQLTCECEYGEELKEIVFEMLHHTCSTAENLYYLQGKLYQFFSVLARG 157 Query: 130 LDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE-NT 188 ++ +++ + + I++ + + +A+ L L+ S L + Sbjct: 158 IEIQQYSNDTKESIH---VQEAIAYIKNYYSQKITVEDIANYLALNRSYLYTIFMNSLGI 214 Query: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 S + +T R+ +L + ++ +++ SCGY ++ F VFK GMTP Y + +R Sbjct: 215 SPKEFLTEFRISRGKEQLALTDLSVEEIAVSCGYRNSLAFGKVFKQKMGMTPTQYRNDNR 274 Query: 249 E 249 + Sbjct: 275 K 275 >UniRef50_Q64XT7 Transcriptional regulator n=13 Tax=Bacteroidales RepID=Q64XT7_BACFR Length = 318 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 72/246 (29%), Gaps = 3/246 (1%) Query: 4 CSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDII 63 DQ + TE W ++G++ + + L + + I Sbjct: 74 PIDQYVFIYCTEGRGWFSLDGQKHPVVPNQYFILPAGLPHAYGADEKEPWTIYWIHFGGT 133 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLF 123 L ++ + + I L ++FRV + + + Sbjct: 134 LAPLYCTHRTCRLTDIKPGMHSRISYRTELFEEIFRVLKMGYSLENLSYASSVF--HHYL 191 Query: 124 TVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 L + ++ S ++ ++ ++ K L+ +A S S Sbjct: 192 GSLRYLREYREAFSEHRPAGEEDPVNAAIHYMKENLGKKLTLAELADYTGYSSSYFSNLF 251 Query: 184 -KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K + +++ A L ++QV G YF +F GM+P Sbjct: 252 LKRTGYAPLSYFNQIKIQKACQFLDFTDMKVNQVCYRVGIEDAYYFSRLFSQIMGMSPRE 311 Query: 243 YVSQHR 248 Y + Sbjct: 312 YKKVKK 317 >UniRef50_A7B7P4 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7P4_RUMGN Length = 253 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 82/245 (33%), Gaps = 15/245 (6%) Query: 8 PCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII---DVSSLNNTLVAHISHDIIK 64 + L E + + +G+E +K L++ D + + L I + Sbjct: 18 YLLHLCLEGEG-VFYSGEERYPIKQGQGFLIHPGKLTFYQADSVNPWSYLWVGIGGHDAE 76 Query: 65 DYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFT 124 YLR + PI + + + A + + + + +L Sbjct: 77 KYLRLAG---------LSARNPIFSCTQIDTAKSYILDMMKH-HALSAANEIYIQGILMQ 126 Query: 125 VLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLK 184 L+ ++ + + I + + +A L L+ S L + Sbjct: 127 FLALLVEDAGCTVSPQQNTSSVYINQAISYIHKNYQNPLTVQEIADYLSLNRSYLTELFL 186 Query: 185 SE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHY 243 S Q +T R+ + L +I ++ SCGY+S+ F F+ G++P Y Sbjct: 187 KTVQLSPQQFLTRYRITKSEELLQSSSLSIQNIAYSCGYSSSFSFSKAFRKVNGLSPSEY 246 Query: 244 VSQHR 248 Q R Sbjct: 247 RKQKR 251 >UniRef50_C7G8V4 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C7G8V4_9FIRM Length = 310 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 79/245 (32%), Gaps = 6/245 (2%) Query: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 I+L E + +G+ L + + + + E + + + I Sbjct: 60 EIILPVENHYDVEASGQAYHILPSEILIIPSGEMHALYAPESGKRFIFLFDVSSIAQMKG 119 Query: 69 F--LNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 + + ++ ++ P + V S + L ++ Sbjct: 120 YTSIQSLMTSCLHITKTTYPQIYNDVYQLLVQMRNEYFSSNEFRELAIYSHLINLFVSIG 179 Query: 127 SRFLDSKKFVSLMMYMLRNCVSDS---VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKL 183 +++ + V I+S ++ L +A S + Sbjct: 180 RNRINNVDLFPNTRSHKQKEYLQKFNEVLDYIDSHYTEELTLDNIADFSGFSKYHFTRLF 239 Query: 184 KS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLH 242 K ++++ + R++ A L +I++++ G++S S F +FK G TP Sbjct: 240 KQYTDSTFYDYLIYRRIKAAEELLANPELSITEIALQSGFSSISTFNRIFKQKKGCTPSE 299 Query: 243 YVSQH 247 Y S + Sbjct: 300 YRSLY 304 >UniRef50_D2LTH2 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTH2_BACS4 Length = 414 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 84/214 (39%), Gaps = 7/214 (3%) Query: 42 NNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVW----QRSATPILTLPCLTPDV 97 ++ + + N V ++I ++ L I T T+ + Sbjct: 201 SHHLLKRDVENISVFSQDDELITICFEKNDQKLDDILFKELSDNIHHTLAFTIHFAISTL 260 Query: 98 FRVAAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIES 157 + S + +T + +R + TVL FLD + + + ++ + I+ Sbjct: 261 QNNLSNISSVYKDTSALMSESRGIGKTVL--FLDQHSDFENEVTHQHHWIIENAKKYIQE 318 Query: 158 DIHKDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQV 216 +KD S +A ++P+ K E S+S+ + + R+ A L+ + ++ Sbjct: 319 HFNKDVKASELAEKHFITPNYFSVIFKQETGVSFSEYLNSIRIEKASELLLSTANKVFEI 378 Query: 217 SQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER 250 ++ GY YF+ +FK G+TP +Y ++ Sbjct: 379 AEYVGYKEYKYFVQIFKRHTGVTPTYYRKINKVN 412 >UniRef50_C6D019 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D019_PAESJ Length = 289 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 88/253 (34%), Gaps = 10/253 (3%) Query: 7 QPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII--DVSSLNN-TLVAHISHDII 63 Q + L + + ++ + A + L+ D N+ +V + + Sbjct: 37 QYELYYLFSGERQYFIKDRK-YPIAAGDLVLIPANELHKTSDTGVPNHARIVLYYNEKYF 95 Query: 64 KDYLRFLNKDLSQIPVWQRSATPILTLPCLTPD--VFRVAAQHSMMPAETESEKERTRAL 121 + Y + ++ L + R + L + ++ + + P E A Sbjct: 96 EQYGKEESELLLSPFLGSRRVFRLAHQERLRFEQLLYGLLQEVQERPPGHEMPIRHAVAE 155 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQ---IIESDIHKDWNLSMVASCLCLSPSL 178 +R K + + + + + + L ++ LS S Sbjct: 156 ALLFAARHAIHNKPDPSDGSVPPSPAAAKAMEIASYVADHFREPLTLDSLSRQFHLSTSY 215 Query: 179 LKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 L + K ++ I R++ A ++L + I++++ G+ S S F VFK Sbjct: 216 LSRTFKKYTGFGLTEYIGITRVKEAQHQLRETDERITEIAAEVGFESLSQFERVFKTHIR 275 Query: 238 MTPLHYVSQHRER 250 ++P Y +Q+ ++ Sbjct: 276 LSPRDYRNQYGQK 288 >UniRef50_C7G788 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=C7G788_9FIRM Length = 292 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 73/246 (29%), Gaps = 18/246 (7%) Query: 8 PCIVLLTEKDVWIRVN------GKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 ++ + G + A L+C +S+ + H Sbjct: 57 YLFFVVLSGSGEVTYREPLSEGGMISSTAHAGDCFFLDCSGEYTHISTDEDPWELLWIHF 116 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 + + RSA + + E + T L Sbjct: 117 NGPEARAYYTYFRDHHNWHFRSA-----------HFTELINAIESIIRYNEEPTDDTDLL 165 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 + L S L + ++ ++ ++ +L +A +S L + Sbjct: 166 TAQQIIHILTLICTESNEKNELLSDKLKTILHYLDEHYTENISLDQLAEQFFISKYYLSR 225 Query: 182 KLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 + K E T+ Q + R+ A L +I +++ CG + SYF VF+ G T Sbjct: 226 EFKKEFGTTVIQYVLAKRINNAKELLRYSNSSIEEIAHLCGIDDASYFNKVFRKMEGCTA 285 Query: 241 LHYVSQ 246 Y + Sbjct: 286 SEYRKR 291 >UniRef50_B6FM02 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B6FM02_9CLOT Length = 294 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 93/253 (36%), Gaps = 9/253 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD--- 61 + + + GK ++AN + ++N S+ +N + I + Sbjct: 36 HEHLQVYYFISGTAKLEC-GKNNFEVQANDLVIVNPNELHYLESTSDNLVFYTIRFEPSF 94 Query: 62 -IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFR--VAAQHSMMPAETESEKERT 118 K L+ I + + ++ ++ + + + + K Sbjct: 95 LFSNHVDLLQTKYLTPITLNRIEFNNLIQNNTELTELVKKVLMEYFNKKIGYELAIKGYI 154 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCV-SDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 L+ T+L + S + + +++IE ++ LS +A+ + LS Sbjct: 155 YYLVVTLLRNHVQHILTQSELDDKEATLIRFQPAFELIEKKYNEKITLSKLANTVGLSVH 214 Query: 178 LLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 + K + + I R+ ++ L NI++++ CG+ + +YF +FK ++ Sbjct: 215 HFCRSFKQLTGKTTTDYINNIRLDKSIYYLKQTDYNITEIALMCGFENGNYFSRIFKKYH 274 Query: 237 GMTPLHYVSQHRE 249 +P Y + ++ Sbjct: 275 STSPSQYRNLYKN 287 >UniRef50_A4ARE0 Putative AraC-family transcriptional regulator n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4ARE0_9FLAO Length = 280 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 36/255 (14%), Positives = 91/255 (35%), Gaps = 12/255 (4%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 ++ + + L + + G A ++ + S + V IS Sbjct: 29 QLHQHEELQLSLVVRGSGKMIVGDSVHQFSAGDFFVIGSNCPHLFQSEESTESVKMISLF 88 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 +L + + + + S + E + + TR + Sbjct: 89 FTSSSFGNDFFNLPDLSDLR----SFFDQSTNGFSLTSNQLEVSELMNEIPKQDKLTRFI 144 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDS-------VYQIIESDIHKDWNLSMVASCLCL 174 L + ++ + L ++ + VY + ++ + +L+ V+ + + Sbjct: 145 KLLGLLKIVNKSERRVLTNFINPKKIGTRDGQRLQIVYDFVINNFQNEISLNTVSELVFM 204 Query: 175 SPSLLKKKLK-SENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFK 233 +P+ + K N + Q + R+ +A L G +I+++++ G+NS S F FK Sbjct: 205 TPNAFCRFFKVRTNKTLFQFLIELRLEHACQLLQHSGLSIAEIAEQSGFNSISNFNRQFK 264 Query: 234 DFYGMTPLHYVSQHR 248 G++P ++ ++ Sbjct: 265 SQKGISPSLFIKNNQ 279 >UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z9N2_9FIRM Length = 293 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 90/258 (34%), Gaps = 20/258 (7%) Query: 5 SDQPCIVLLTEKDV-------WIRVNGKEPISLKANHMALLNCENNII-----DVSSLNN 52 ++ ++++ + VN + + + + ++ ++ I + + Sbjct: 41 HNEVELIVIKKGQGLVNVNLVTYTVNAGDVVFVFPGQLHSISQKDYSIMEYENILFKSSL 100 Query: 53 TLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETE 112 + K L+ +L+ PV + +L L ++ ++ + Sbjct: 101 LKSSGYDLCNDKFIQPLLSGNLNIYPVINSNFDFHDSLYSLINEIDKLCDK------RPY 154 Query: 113 SEKERTRALLFTVLSRFLDSKKFVSLMMYMLRN-CVSDSVYQIIESDIHKDWNLSMVASC 171 + + ++ LF + + + + + ++ + + ++ +A Sbjct: 155 AYQLAVKSYLFQIFYLLISNCGLNQIKPISKKALEKIKTILSYVAEHFQDNISIEEIAGH 214 Query: 172 LCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFIS 230 S S K K S+ Q + R+ A L +I ++ + G+++ SYF Sbjct: 215 CFYSKSYFMKFFKETMGMSFVQYLNDYRLEVAAKLLTTTSDDIINIAINTGFDNLSYFNR 274 Query: 231 VFKDFYGMTPLHYVSQHR 248 FK YG+TP Y R Sbjct: 275 CFKKKYGITPGKYRKDAR 292 >UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDZ7_EUBSP Length = 515 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 2/208 (0%) Query: 42 NNIIDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQI-PVWQRSATPILTLPCLTPDVFRV 100 N D+ N L + D + +K S + + + Sbjct: 297 ENTFDLFEFENHLFNRLFEDAEQVLKNIFSKFKSNFVSSIETKNICFQIYYICYRVLKKR 356 Query: 101 AAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIH 160 A +L ++ K +N + ++ + I ++ Sbjct: 357 EAIPPSSELLARIHSAPDIFILENTVNELFQYTKNQFNGSNGTQNRIIENTIKFIHQNLA 416 Query: 161 KDWNLSMVASCLCLSPSLLKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQS 219 +L ++A L +S S L + K + S ++ + R+ A L +++ Sbjct: 417 TALSLEVIAEHLHISASHLSRTFKKYCDESLTEYVNKTRIEKAKEYLKDSNMLTYEIANQ 476 Query: 220 CGYNSTSYFISVFKDFYGMTPLHYVSQH 247 GYN +YF S+FK + G +P Y ++ Sbjct: 477 VGYNDATYFSSIFKKYTGFSPSEYRQKY 504 >UniRef50_Q9KBM0 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9KBM0_BACHD Length = 299 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 82/251 (32%), Gaps = 11/251 (4%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAH---ISHD 61 + + + + ++ G + +++A + + + + + D Sbjct: 38 HHEMEWIYMEAGEAEFQI-GTKMTTVRAGEGLFIPSGHLHGAYPVSDKPFSLYATVVHPD 96 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 I + L + P T + L + + ++ + ++E + Sbjct: 97 FISSFGYDLIQSRYIDPFKDSERTGPIKLCPTHYWMSDMLTMLQATISQFQQKEEGYELV 156 Query: 122 LFTVLSRFLDS------KKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLS 175 + L + + + + V Q I+ + + +A+ + +S Sbjct: 157 IKANLLQMMAELVKHFPRTEEQKTGTPQQIRQIKKVLQFIDEHYDEKLTIKQLANLVQMS 216 Query: 176 PSLLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKD 234 + KS + + I T R+ A L + I +S S G++ SYFI +FK Sbjct: 217 EGHFSRFFKSIVRMTAVEYIHTQRLNKAARLLRETDRTIMDISMSVGFDHPSYFIKLFKR 276 Query: 235 FYGMTPLHYVS 245 TP + Sbjct: 277 HKRCTPSEFRR 287 >UniRef50_UPI0001B4A5A3 transcriptional regulator n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4A5A3 Length = 302 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 32/248 (12%), Positives = 73/248 (29%), Gaps = 8/248 (3%) Query: 2 RICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHD 61 R S Q ++ TE + W ++G+ + + ++ I +S N+ + Sbjct: 61 RYGSQQHILIYCTEGEGWYSIHGQRQ-KVCKDQFFIIEAGLPHIYAASENSPWSIYW--- 116 Query: 62 IIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRAL 121 + L + + + + + E L Sbjct: 117 ---LHFTGEKSHLFNSFYNKLHKIDESPNARIKDRMQLFEEIYQNLEMGYSIENLEYTTL 173 Query: 122 LFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKK 181 + + V+ + +I K +L +A + S S + Sbjct: 174 CLWHFIASFKFVSQFREINRAKQGDVTQEAISYMRKNIEKKLSLDDIAGSVNYSSSHFGQ 233 Query: 182 KL-KSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 K + +++ A L I ++++ G+ +F VF G TP Sbjct: 234 VFLKKSGYTPLNYFNQLKIQKACQLLDFSDLKIKEIAEQLGFYDQYHFSKVFYKQIGETP 293 Query: 241 LHYVSQHR 248 Y +++ Sbjct: 294 SSYKKRNK 301 >UniRef50_C5D6R8 Transcriptional regulator, AraC family n=7 Tax=Bacillaceae RepID=C5D6R8_GEOSW Length = 287 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 83/248 (33%), Gaps = 15/248 (6%) Query: 10 IVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLRF 69 ++ + + +++ KE + ++ L+ + T + + I Y Sbjct: 38 LLYVKKGCLYMTEENKEFAVKEGEYLILIPGREHYGHYPCTEETQLVWLHFTIEGGYDIV 97 Query: 70 LNKDLSQIPVWQRSATPI-----------LTLPCLTPDVFRVAAQHSMMPAETESEKERT 118 + LS V +R AT + + ++ Q + E + ++ Sbjct: 98 PKQSLSWHNVIEREATYVEPVQYRFWIRQYAKVKQRERIEQLLQQLVELNEERDPDRSLK 157 Query: 119 RALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSL 178 + L F L ++ + V IE + + +A L P Sbjct: 158 QLLYFVEFIWQLQKQELH---IPSASEKVCAEAVAYIERHYAEPITIQQLAQSLRFHPDY 214 Query: 179 LKKKLKSE-NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYG 237 + + ++ S+ Q + R+ A L + I +++ G +YF +FK G Sbjct: 215 ITRCMQKTIGMSFVQYLNYYRLSKAKKWLAETNETIEAIAKRAGIEDGAYFSRLFKKIEG 274 Query: 238 MTPLHYVS 245 +TP Y Sbjct: 275 VTPTEYRR 282 >UniRef50_C4Z7U7 LacI family transcriptional regulator n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z7U7_EUBE2 Length = 304 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 88/256 (34%), Gaps = 8/256 (3%) Query: 5 SDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNII----DVSSLNNTLVAHISH 60 +Q I + E + + K + + L + D N ++ +I + Sbjct: 34 HNQYEIFYIIEGERQFFFDNKSYNAYAGDIAILDTNLVHTTCSISDEDKGYNRVILYIDY 93 Query: 61 DIIKDYLRFLNKDLSQIPVWQRSATPIL---TLPCLTPDVFRVAAQHSMMPAETESEKER 117 + + D+ + L + + + + +S E Sbjct: 94 EKMCDFDKKYPGLNLVNYFHNNYGIYHLNEDQRIAFLNLYRDLRHELTKKNSGYQSRVEI 153 Query: 118 TRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPS 177 L + ++ + + ++ +E++ K+ L ++ L +S Sbjct: 154 ATIYWLYKLLSLKHDSTQIHAVINSPKELSASNISAYLEANYTKELALDTISDELFMSKY 213 Query: 178 LLKKKLKS-ENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFY 236 + + K + ++ + T R++ A L +IS V+ G+ S SYF +FK Sbjct: 214 YMCRIFKEYTGFTITEYVNTLRIKKATQILESSNLSISDVAAELGFESASYFERIFKKIM 273 Query: 237 GMTPLHYVSQHRERTV 252 +TPL Y H+ T+ Sbjct: 274 TVTPLKYRKTHQSVTI 289 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.154 0.433 Lambda K H 0.267 0.0472 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,467,846,131 Number of Sequences: 3077464 Number of extensions: 83687598 Number of successful extensions: 307908 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 15939 Number of HSP's successfully gapped in prelim test: 2775 Number of HSP's that attempted gapping in prelim test: 261979 Number of HSP's gapped (non-prelim): 24946 length of query: 253 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 127 effective length of database: 652,635,892 effective search space: 82884758284 effective search space used: 82884758284 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 92 (39.8 bits)