 |
| Job Description | P42597 | | Confidence | 57.20% | Date | Thu Jan 5 12:01:42 GMT 2012 |
| Rank | 40 | Aligned Residues | 74 |
| % Identity | 16% | Template | c3qnfA_ |
| PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1; |
PDBTitle: crystal structure of the open state of human endoplasmic reticulum2 aminopeptidase 1 erap1
|
| Resolution | 3.00 Å |
|
 |
|   |   |
57 | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | |
. | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  | . |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
Q | F | L | R | N | A | P | P | I | N | K | V | M | Y | D | N | K | I | H | V | L | K | N | A | L | G | L | H | . |
T | A | V | S | R | V | Q | G | G | K | L | K | A | K | V | E | I | R | V | A | T | V | F | R | N | A | P | . |
. |
. |
. |
. |
. |
. |
. |
E | P | F | L | R | M | I | V | V | H | E | L | A | H | L | K |
| Query Conservation |   |
  |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . |
|   |   |   |
|   |
|
|
|
|
|   |   |
|   |   |
|   |   |
|   |   |
|   |   |   |
| . | . | . | . | . | . | . | . |   |   |   |   |   |
|
|
|   |
|
|
|   |
|
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |
|   |
|   |   |
|   |   |   |   |
|
|
|
|
|   |
|
|
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
| Template Sequence |   |
D | Y | A | L | D | A | A | V | T | L | L | E | F | Y | E | D | Y | F | S | I | P | Y | P | L | P | K | Q | D | L | A | A | I | P | D | F | Q | S | G | A | M | E | N | W | G | L | T | T | Y | R | E | S | A | L | L | F | D | A | E | K | S | S | A | S | S | K | L | G | I | T | M | T | V | A | H | E | L | A | H | Q | W |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
| S | S | S |  |  |  |  |  |  |  | T | T |
|
| S | S |  |  |
|
| T | T |  |  |  |  |  | G | G | G | T |
|
|
| T | T | T | S |
| T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . |
|   |
|   |   |
128 | . | 130 |
| Predicted Secondary structure |   |
|
|
|
| Query SS confidence |   |
|
|
|
| Query Sequence |   |
E | K | E |
| Query Conservation |   |
  |   |   |
| Alig confidence |   |
|
|
|
| Template Conservation |   |
|
|
|
| Template Sequence |   |
F | G | N |
| Template Known Secondary structure |   |
B | T | T |
| Template Predicted Secondary structure |   |
 |
|
|
| Template SS confidence |   |
|
|
|
|   |   |
360 | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|