16/01/2012 17:12:54 : INFO  : Run start: Mon Jan 16 17:12:54 GMT 2012
16/01/2012 17:12:55 : INFO  : Initialised job
16/01/2012 17:12:55 : INFO  : Renaming log file 'phyre2_20120116_171253.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/9bfbabc29201b47d/phyre_20120116_171253.log'
16/01/2012 17:12:55 : INFO  : Initialised job:
Sequence
>batch____
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPL
LHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLK
QALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGES
IRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIK
KRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQG
YF

16/01/2012 17:12:55 : INFO  : Checked sequence
16/01/2012 17:12:55 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 17:12:55 : INFO  : PSI-BLAST 3 iterations
16/01/2012 17:14:36 : INFO  : PSI-BLAST 5 iterations
16/01/2012 17:16:50 : INFO  : Finished PSI-BLAST
16/01/2012 17:16:50 : INFO  : Running Buildali to generate a3m file
16/01/2012 17:22:01 : INFO  : Converting to HMM
16/01/2012 17:22:03 : INFO  : Calibrating HMM
16/01/2012 17:22:10 : INFO  : Searching HMM database
16/01/2012 17:28:05 : INFO  : Finished buildali
16/01/2012 17:28:05 : INFO  : Predicting secondary structure
16/01/2012 17:28:05 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 17:28:05 : INFO  : Predicting Disordered regions
16/01/2012 17:28:05 : INFO  : Predicted Disorder (Disopred)
16/01/2012 17:28:05 : INFO  : Running memsat_svm check
16/01/2012 17:30:00 : INFO  : Globular protein
16/01/2012 17:30:00 : INFO  : Predicted Transmembrane (memsat_svm) ID '9bfbabc29201b47d'
16/01/2012 17:30:00 : INFO  : Initialising fold library search
16/01/2012 17:30:00 : INFO  : Initialised search input
16/01/2012 17:30:00 : INFO  : Building Ensemble models
16/01/2012 17:30:00 : INFO  : Building hh.c2oq2B_.model.1.pdb
16/01/2012 17:30:00 : INFO  : Building hh.c2goyC_.model.2.pdb
16/01/2012 17:30:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9bfbabc29201b47d/hh.c2goyC_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9bfbabc29201b47d/c2goyC_.2.pdb
16/01/2012 17:30:01 : INFO  : Building hh.c2o8vA_.model.3.pdb
16/01/2012 17:30:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9bfbabc29201b47d/hh.c2o8vA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9bfbabc29201b47d/c2o8vA_.3.pdb
16/01/2012 17:30:01 : INFO  : Building hh.c3g59A_.model.4.pdb
16/01/2012 17:30:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9bfbabc29201b47d/hh.c3g59A_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9bfbabc29201b47d/c3g59A_.4.pdb
16/01/2012 17:30:02 : INFO  : Building hh.c2wsiA_.model.5.pdb
16/01/2012 17:30:02 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9bfbabc29201b47d/hh.c2wsiA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9bfbabc29201b47d/c2wsiA_.5.pdb
16/01/2012 17:30:02 : INFO  : Building hh.c1zunA_.model.6.pdb
16/01/2012 17:30:02 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9bfbabc29201b47d/hh.c1zunA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9bfbabc29201b47d/c1zunA_.6.pdb
16/01/2012 17:30:02 : INFO  : Building c2oq2B_.1.pdb
16/01/2012 17:30:03 : INFO  : Building c2goyC_.2.pdb
16/01/2012 17:30:03 : INFO  : Building c2o8vA_.3.pdb
16/01/2012 17:30:03 : INFO  : Building c3g59A_.4.pdb
16/01/2012 17:30:04 : INFO  : Building c2wsiA_.5.pdb
16/01/2012 17:30:04 : INFO  : Building c1zunA_.6.pdb
16/01/2012 17:30:04 : INFO  : Building d1sura_.7.pdb
16/01/2012 17:30:05 : INFO  : Building d1zuna1.8.pdb
16/01/2012 17:30:05 : INFO  : Building c3a2kB_.9.pdb
16/01/2012 17:30:05 : INFO  : Building c2e21A_.10.pdb
16/01/2012 17:30:08 : INFO  : Building c1ni5A_.11.pdb
16/01/2012 17:30:08 : INFO  : Building d1wy5a1.12.pdb
16/01/2012 17:30:09 : INFO  : Building c3bl5E_.13.pdb
16/01/2012 17:30:09 : INFO  : Building d1ni5a1.14.pdb
16/01/2012 17:30:09 : INFO  : Building d1k92a1.15.pdb
16/01/2012 17:30:10 : INFO  : Building d1j20a1.16.pdb
16/01/2012 17:30:10 : INFO  : Building c2dplA_.17.pdb
16/01/2012 17:30:10 : INFO  : Building d1vl2a1.18.pdb
16/01/2012 17:30:11 : INFO  : Building d1gpma1.19.pdb
16/01/2012 17:30:11 : INFO  : Building c3p52B_.20.pdb
16/01/2012 17:30:20 : INFO  : Finished HH model building
16/01/2012 17:30:20 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 17:30:26 : INFO  : html domain output complete ID '9bfbabc29201b47d'
16/01/2012 18:18:20 : INFO  : Run end  : Mon Jan 16 18:18:20 GMT 2012
