16/01/2012 08:52:43 : INFO  : Run start: Mon Jan 16 08:52:43 GMT 2012
16/01/2012 08:52:43 : INFO  : Initialised job
16/01/2012 08:52:43 : INFO  : Renaming log file 'phyre2_20120116_085243.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/9be6c3af37932595/phyre_20120116_085243.log'
16/01/2012 08:52:43 : INFO  : Initialised job:
Sequence
>batch____
MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWII
GVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPGLIVALILGLAGGVSLGPE
HPIMTVNIALAVAIGARLLPRVNRMEWTILASAGTIGALFGTPVAAALIFSQTLNGSSEV
PLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVA
VWCLPRLHAMMHQMKNPVLVLGIGGFILGILGVIGGPVSLFKGLDEMQQMVANQAFSTSD
YFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHEHVPAVPAAITVSCAILGIV
LVVTRDGWLSLFMAAVVVPNTTLLPLLCIVMLPAWLLLAGKPMMMVNRPKQQPPHDNV

16/01/2012 08:52:43 : INFO  : Checked sequence
16/01/2012 08:52:44 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 08:52:44 : INFO  : PSI-BLAST 3 iterations
16/01/2012 08:55:43 : INFO  : PSI-BLAST 5 iterations
16/01/2012 09:00:25 : INFO  : Finished PSI-BLAST
16/01/2012 09:00:25 : INFO  : Running Buildali to generate a3m file
16/01/2012 09:16:50 : INFO  : Converting to HMM
16/01/2012 09:16:53 : INFO  : Calibrating HMM
16/01/2012 09:17:06 : INFO  : Searching HMM database
16/01/2012 09:25:43 : INFO  : Finished buildali
16/01/2012 09:25:43 : INFO  : Predicting secondary structure
16/01/2012 09:25:43 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 09:25:43 : INFO  : Predicting Disordered regions
16/01/2012 09:25:43 : INFO  : Predicted Disorder (Disopred)
16/01/2012 09:25:43 : INFO  : Running memsat_svm check
16/01/2012 09:31:40 : INFO  : Running memsat_svm full
16/01/2012 09:36:28 : INFO  : Predicted Transmembrane (memsat_svm) ID '9be6c3af37932595'
16/01/2012 09:36:28 : INFO  : Initialising fold library search
16/01/2012 09:36:28 : INFO  : Initialised search input
16/01/2012 09:36:28 : INFO  : Building Ensemble models
16/01/2012 09:36:28 : INFO  : Building hh.c2ht2B_.model.1.pdb
16/01/2012 09:36:29 : INFO  : Building hh.d1otsa_.model.2.pdb
16/01/2012 09:36:29 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9be6c3af37932595/hh.d1otsa_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9be6c3af37932595/d1otsa_.2.pdb
16/01/2012 09:36:29 : INFO  : Building hh.c3nd0A_.model.3.pdb
16/01/2012 09:36:30 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9be6c3af37932595/hh.c3nd0A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9be6c3af37932595/c3nd0A_.3.pdb
16/01/2012 09:36:30 : INFO  : Building hh.d1kpla_.model.4.pdb
16/01/2012 09:36:30 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9be6c3af37932595/hh.d1kpla_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9be6c3af37932595/d1kpla_.4.pdb
16/01/2012 09:36:30 : INFO  : Building hh.c3orgB_.model.5.pdb
16/01/2012 09:36:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9be6c3af37932595/hh.c3orgB_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9be6c3af37932595/c3orgB_.5.pdb
16/01/2012 09:36:31 : INFO  : Building c2ht2B_.1.pdb
16/01/2012 09:36:32 : INFO  : Building d1otsa_.2.pdb
16/01/2012 09:36:32 : INFO  : Building c3nd0A_.3.pdb
16/01/2012 09:36:33 : INFO  : Building d1kpla_.4.pdb
16/01/2012 09:36:33 : INFO  : Building c3orgB_.5.pdb
16/01/2012 09:36:34 : INFO  : Building d1l7va_.6.pdb
16/01/2012 09:36:34 : INFO  : Building c2nq2A_.7.pdb
16/01/2012 09:36:34 : INFO  : Building c2dw3A_.8.pdb
16/01/2012 09:36:35 : INFO  : Building c2kncA_.9.pdb
16/01/2012 09:36:35 : INFO  : Building c2k47A_.10.pdb
16/01/2012 09:36:35 : INFO  : Building c2kncB_.11.pdb
16/01/2012 09:36:36 : INFO  : Building c3sokB_.12.pdb
16/01/2012 09:36:36 : INFO  : Building c1rh4A_.13.pdb
16/01/2012 09:36:36 : INFO  : Building c1ciiA_.14.pdb
16/01/2012 09:36:37 : INFO  : Building d1joya_.15.pdb
16/01/2012 09:36:37 : INFO  : Building c2kjfA_.16.pdb
16/01/2012 09:36:37 : INFO  : Building d1vyua1.17.pdb
16/01/2012 09:36:37 : INFO  : Building d2pila_.18.pdb
16/01/2012 09:36:38 : INFO  : Building d1vyva1.19.pdb
16/01/2012 09:36:38 : INFO  : Building d1j4na_.20.pdb
16/01/2012 09:36:53 : INFO  : Finished HH model building
16/01/2012 09:36:53 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 09:37:00 : INFO  : html domain output complete ID '9be6c3af37932595'
16/01/2012 10:56:02 : INFO  : Run end  : Mon Jan 16 10:56:02 GMT 2012
