Phyre 2 Results for P67729

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Email | l.a.kelley@imperial.ac.uk
Description | P67729
Date | Thu Jan 5 12:10:50 GMT 2012
Unique Job ID | 9be6c3af37932595

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2ht2B_
Top template information
PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex
Confidence and coverage
Confidence: | 100.0% | Coverage: | 98%
411 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | L | H | P | R | A | R | T | M | L | L | L | S | L | P | A | V | A | I | G | I | A | S | S | L | I | L | I | V | V | M | K | I | A | S | V | L | Q | N | L | L | W | Q | R | L | P | G | T | L | G | I | A | Q | D | S | P | L | W | I | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | G | V | L | T | L | T | G | I | A | V | G | L | V | I | R | F | S | Q | G | H | A | G | P | D | P | A | C | E | P | L | I | G | A | P | V | P | P | S | A | L | P | G | L | I | V | A | L | I | L | G | L | A | G | G | V | S | L | G | P | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | H | P | I | M | T | V | N | I | A | L | A | V | A | I | G | A | R | L | L | P | R | V | N | R | M | E | W | T | I | L | A | S | A | G | T | I | G | A | L | F | G | T | P | V | A | A | A | L | I | F | S | Q | T | L | N | G | S | S | E | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | P | L | W | D | R | L | F | A | P | L | M | A | A | A | A | G | A | L | T | T | G | L | F | F | H | P | H | F | S | L | P | I | A | H | Y | G | Q | M | E | M | T | D | I | L | S | G | A | I | V | A | A | I | A | I | A | A | G | M | V | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | V | W | C | L | P | R | L | H | A | M | M | H | Q | M | K | N | P | V | L | V | L | G | I | G | G | F | I | L | G | I | L | G | V | I | G | G | P | V | S | L | F | K | G | L | D | E | M | Q | Q | M | V | A | N | Q | A | F | S | T | S | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | Y | F | L | L | A | V | I | K | L | A | A | L | V | V | A | A | A | S | G | F | R | G | G | R | I | F | P | A | V | F | V | G | V | A | L | G | L | M | L | H | E | H | V | P | A | V | P | A | A | I | T | V | S | C | A | I | L | G | I | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | .
Sequence |  | L | V | V | T | R | D | G | W | L | S | L | F | M | A | A | V | V | V | P | N | T | T | L | L | P | L | L | C | I | V | M | L | P | A | W | L | L | L | A | G | K | P | M | M | M | V | N | R | P | K | Q | Q | P | P | H | D | N | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2ht2B_ |

### PDB 2ht2 chain B

Region: 4 - 416
Aligned: 411
Modelled: 413
Confidence: 100.0%
Identity: 17%
PDB header:membrane protein
Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca;
PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex

Phyre2
2 |
| d1otsa_ |

### PDB 1ots chain A

Region: 3 - 411
Aligned: 407
Modelled: 409
Confidence: 100.0%
Identity: 17%
Fold: Clc chloride channel
Superfamily: Clc chloride channel
Family: Clc chloride channel

Phyre2
3 |
| c3nd0A_ |

### PDB 3nd0 chain A

Region: 2 - 417
Aligned: 408
Modelled: 416
Confidence: 100.0%
Identity: 13%
PDB header:transport protein
Chain: A: PDB Molecule:sll0855 protein;
PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter

Phyre2
4 |
| d1kpla_ |

### PDB 1kpl chain A

Region: 8 - 410
Aligned: 401
Modelled: 403
Confidence: 100.0%
Identity: 17%
Fold: Clc chloride channel
Superfamily: Clc chloride channel
Family: Clc chloride channel

Phyre2
5 |
| c3orgB_ |

### PDB 3org chain B

Region: 7 - 416
Aligned: 382
Modelled: 392
Confidence: 100.0%
Identity: 16%
PDB header:transport protein
Chain: B: PDB Molecule:cmclc;
PDBTitle: crystal structure of a eukaryotic clc transporter

Phyre2
6 |
| d1l7va_ |

### PDB 1l7v chain A

Region: 4 - 156
Aligned: 146
Modelled: 153
Confidence: 44.1%
Identity: 16%
Fold: ABC transporter involved in vitamin B12 uptake, BtuC
Superfamily: ABC transporter involved in vitamin B12 uptake, BtuC
Family: ABC transporter involved in vitamin B12 uptake, BtuC

Phyre2
7 |
| c2nq2A_ |

### PDB 2nq2 chain A

Region: 5 - 161
Aligned: 150
Modelled: 150
Confidence: 21.3%
Identity: 11%
PDB header:metal transport
Chain: A: PDB Molecule:hypothetical abc transporter permease protein
PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.

Phyre2
8 |
| c2dw3A_ |

### PDB 2dw3 chain A

Region: 309 - 331
Aligned: 23
Modelled: 23
Confidence: 15.6%
Identity: 22%
PDB header:photosynthesis
Chain: A: PDB Molecule:intrinsic membrane protein pufx;
PDBTitle: solution structure of the rhodobacter sphaeroides pufx2 membrane protein

Phyre2
9 |
| c2kncA_ |

### PDB 2knc chain A

Region: 224 - 257
Aligned: 34
Modelled: 34
Confidence: 13.2%
Identity: 6%
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex

Phyre2
10 |
| c2k47A_ |

### PDB 2k47 chain A

Region: 116 - 145
Aligned: 30
Modelled: 30
Confidence: 7.8%
Identity: 13%
PDB header:replication
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: solution structure of the c-terminal n-rna binding domain2 of the vesicular stomatitis virus phosphoprotein

Phyre2
11 |
| c2kncB_ |

### PDB 2knc chain B

Region: 14 - 36
Aligned: 23
Modelled: 23
Confidence: 7.4%
Identity: 13%
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex

Phyre2
12 |
| c3sokB_ |

### PDB 3sok chain B

Region: 8 - 38
Aligned: 31
Modelled: 31
Confidence: 7.4%
Identity: 19%
PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima

Phyre2
13 |
| c1rh4A_ |

### PDB 1rh4 chain A

Region: 393 - 412
Aligned: 20
Modelled: 20
Confidence: 6.6%
Identity: 25%
PDB header:coiled coil
Chain: A: PDB Molecule:right-handed coiled coil tetramer;
PDBTitle: rh4 designed right-handed coiled coil tetramer

Phyre2
14 |
| c1ciiA_ |

### PDB 1cii chain A

Region: 102 - 144
Aligned: 42
Modelled: 43
Confidence: 6.6%
Identity: 21%
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia

Phyre2
15 |
| d1joya_ |

### PDB 1joy chain A

Region: 364 - 377
Aligned: 14
Modelled: 14
Confidence: 6.2%
Identity: 14%
Fold: ROP-like
Superfamily: Homodimeric domain of signal transducing histidine kinase
Family: Homodimeric domain of signal transducing histidine kinase

Phyre2
16 |
| c2kjfA_ |

### PDB 2kjf chain A

Region: 105 - 132
Aligned: 28
Modelled: 28
Confidence: 6.2%
Identity: 32%
PDB header:antimicrobial protein
Chain: A: PDB Molecule:carnocyclin-a;
PDBTitle: the solution structure of the circular bacteriocin2 carnocyclin a (ccla)

Phyre2
17 |
| d1vyua1 |

### PDB 1vyu chain A domain 1

Region: 404 - 418
Aligned: 15
Modelled: 15
Confidence: 6.0%
Identity: 27%
Fold: SH3-like barrel
Superfamily: SH3-domain
Family: SH3-domain

Phyre2
18 |
| d2pila_ |

### PDB 2pil chain A

Region: 8 - 39
Aligned: 32
Modelled: 32
Confidence: 5.9%
Identity: 19%
Fold: Pili subunits
Superfamily: Pili subunits
Family: Pilin

Phyre2
19 |
| d1vyva1 |

### PDB 1vyv chain A domain 1

Region: 394 - 418
Aligned: 25
Modelled: 25
Confidence: 5.9%
Identity: 28%
Fold: SH3-like barrel
Superfamily: SH3-domain
Family: SH3-domain

Phyre2
20 |
| d1j4na_ |

### PDB 1j4n chain A

Region: 15 - 91
Aligned: 77
Modelled: 77
Confidence: 5.8%
Identity: 10%
Fold: Aquaporin-like
Superfamily: Aquaporin-like
Family: Aquaporin-like

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2ht2B_ |
|  | 100.0 | 17 | PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex
2 | d1otsa_ |
|  | 100.0 | 17 | Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel
3 | c3nd0A_ |
|  | 100.0 | 13 | PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter
4 | d1kpla_ |
|  | 100.0 | 17 | Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel
5 | c3orgB_ |
|  | 100.0 | 16 | PDB header:transport protein Chain: B: PDB Molecule:cmclc; PDBTitle: crystal structure of a eukaryotic clc transporter
6 | d1l7va_ |
|  | 44.1 | 16 | Fold:ABC transporter involved in vitamin B12 uptake, BtuC Superfamily:ABC transporter involved in vitamin B12 uptake, BtuC Family:ABC transporter involved in vitamin B12 uptake, BtuC
7 | c2nq2A_ |
|  | 21.3 | 11 | PDB header:metal transport Chain: A: PDB Molecule:hypothetical abc transporter permease protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
8 | c2dw3A_ |
|  | 15.6 | 22 | PDB header:photosynthesis Chain: A: PDB Molecule:intrinsic membrane protein pufx; PDBTitle: solution structure of the rhodobacter sphaeroides pufx2 membrane protein
9 | c2kncA_ |
|  | 13.2 | 6 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
10 | c2k47A_ |
|  | 7.8 | 13 | PDB header:replication Chain: A: PDB Molecule:phosphoprotein; PDBTitle: solution structure of the c-terminal n-rna binding domain2 of the vesicular stomatitis virus phosphoprotein
11 | c2kncB_ |
|  | 7.4 | 13 | PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
12 | c3sokB_ |
|  | 7.4 | 19 | PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima
13 | c1rh4A_ |
|  | 6.6 | 25 | PDB header:coiled coil Chain: A: PDB Molecule:right-handed coiled coil tetramer; PDBTitle: rh4 designed right-handed coiled coil tetramer
14 | c1ciiA_ |
|  | 6.6 | 21 | PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia
15 | d1joya_ |
|  | 6.2 | 14 | Fold:ROP-like Superfamily:Homodimeric domain of signal transducing histidine kinase Family:Homodimeric domain of signal transducing histidine kinase
16 | c2kjfA_ |
|  | 6.2 | 32 | PDB header:antimicrobial protein Chain: A: PDB Molecule:carnocyclin-a; PDBTitle: the solution structure of the circular bacteriocin2 carnocyclin a (ccla)
17 | d1vyua1 |
|  | 6.0 | 27 | Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain
18 | d2pila_ |
|  | 5.9 | 19 | Fold:Pili subunits Superfamily:Pili subunits Family:Pilin
19 | d1vyva1 |
|  | 5.9 | 28 | Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain
20 | d1j4na_ |
|  | 5.8 | 10 | Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like
21 | c2k1aA_ |
| not modelled | 5.5 | 3 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
22 | c1ymgA_ |
| not modelled | 5.4 | 14 | PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution
23 | d1ymga1 |
| not modelled | 5.4 | 14 | Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like
24 | c2o6nA_ |
| not modelled | 5.4 | 25 | PDB header:de novo protein Chain: A: PDB Molecule:rh4b designed peptide; PDBTitle: rh4b: designed right-handed coiled coil tetramer with all biological2 amino acids
25 | c3a0hX_ |
| not modelled | 5.4 | 19 | PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex
26 | c3a0hx_ |
| not modelled | 5.4 | 19 | PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex
27 | c3a0bX_ |
| not modelled | 5.4 | 19 | PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of br-substituted photosystem ii complex
28 | c3a0bx_ |
| not modelled | 5.4 | 19 | PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of br-substituted photosystem ii complex
29 | c2d9sA_ |
| not modelled | 5.2 | 13 | PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna
30 | d1se7a_ |
| not modelled | 5.0 | 14 | Fold:DNA polymerase III theta subunit-like Superfamily:DNA polymerase III theta subunit-like Family:DNA polymerase III theta subunit-like

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0