BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (55 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P58094 Uncharacterized protein yciX n=48 Tax=Enterobact... 113 2e-24 UniRef50_A4WAY8 Putative uncharacterized protein n=1 Tax=Enterob... 50 3e-05 UniRef50_UPI0001826E47 hypothetical protein EcanA3_06165 n=1 Tax... 49 3e-05 UniRef50_D2TL36 Putative uncharacterized protein n=1 Tax=Citroba... 46 3e-04 UniRef50_B7LS04 Putative uncharacterized protein n=1 Tax=Escheri... 46 5e-04 >UniRef50_P58094 Uncharacterized protein yciX n=48 Tax=Enterobacteriaceae RepID=YCIX_ECOLI Length = 55 Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 55/55 (100%), Positives = 55/55 (100%) Query: 1 MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ Sbjct: 1 MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 >UniRef50_A4WAY8 Putative uncharacterized protein n=1 Tax=Enterobacter sp. 638 RepID=A4WAY8_ENT38 Length = 60 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 31/44 (70%) Query: 12 LCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 LCQ D+ ++E S +P+ W+L++QQQAFI+ FAED+ KQ Sbjct: 17 LCQPGDSNPTARKEPSTSVPESWKLSAQQQAFIDTFAEDEPKKQ 60 >UniRef50_UPI0001826E47 hypothetical protein EcanA3_06165 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826E47 Length = 58 Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 12 LCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 +CQH D+ + ++ + +P W+LT QQQAFI++FAED+ KQ Sbjct: 15 MCQHRDSSHKGRKAPATSVPASWRLTPQQQAFIDVFAEDEPRKQ 58 >UniRef50_D2TL36 Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TL36_CITRO Length = 55 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 2 VGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 V +Q S P CQ D+ +TK +PD W+LT QQQAFI+ F+E+D+ KQ Sbjct: 3 VHPQQRVSLPTCQSHDSVRKTK-SVRETVPDSWKLTRQQQAFIDSFSEEDKKKQ 55 >UniRef50_B7LS04 Putative uncharacterized protein n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LS04_ESCF3 Length = 56 Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 1 MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 MV QEQ + +PL + D+ IP+ W+LT QQ+AFIE+ ED+ PKQ Sbjct: 2 MVTQEQQQITPLVKTCDSSEYIPNGMVTCIPESWELTPQQRAFIEMCDEDELPKQ 56 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B7LS04 Putative uncharacterized protein n=1 Tax=Escheri... 72 5e-12 UniRef50_P58094 Uncharacterized protein yciX n=48 Tax=Enterobact... 67 2e-10 UniRef50_UPI0001826E47 hypothetical protein EcanA3_06165 n=1 Tax... 66 4e-10 UniRef50_A4WAY8 Putative uncharacterized protein n=1 Tax=Enterob... 61 1e-08 UniRef50_D2TL36 Putative uncharacterized protein n=1 Tax=Citroba... 58 7e-08 Sequences not found previously or not previously below threshold: UniRef50_B4TX23 Putative uncharacterized protein n=21 Tax=Salmon... 42 0.006 UniRef50_A9MWT2 Putative uncharacterized protein n=1 Tax=Salmone... 39 0.030 CONVERGED! >UniRef50_B7LS04 Putative uncharacterized protein n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LS04_ESCF3 Length = 56 Score = 72.2 bits (175), Expect = 5e-12, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 1 MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 MV QEQ + +PL + D+ IP+ W+LT QQ+AFIE+ ED+ PKQ Sbjct: 2 MVTQEQQQITPLVKTCDSSEYIPNGMVTCIPESWELTPQQRAFIEMCDEDELPKQ 56 >UniRef50_P58094 Uncharacterized protein yciX n=48 Tax=Enterobacteriaceae RepID=YCIX_ECOLI Length = 55 Score = 66.8 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 55/55 (100%), Positives = 55/55 (100%) Query: 1 MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ Sbjct: 1 MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 >UniRef50_UPI0001826E47 hypothetical protein EcanA3_06165 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826E47 Length = 58 Score = 66.0 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 2 VGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 V +CQH D+ + ++ + +P W+LT QQQAFI++FAED+ KQ Sbjct: 5 VTVRTETVKQMCQHRDSSHKGRKAPATSVPASWRLTPQQQAFIDVFAEDEPRKQ 58 >UniRef50_A4WAY8 Putative uncharacterized protein n=1 Tax=Enterobacter sp. 638 RepID=A4WAY8_ENT38 Length = 60 Score = 60.6 bits (145), Expect = 1e-08, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 31/44 (70%) Query: 12 LCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 LCQ D+ ++E S +P+ W+L++QQQAFI+ FAED+ KQ Sbjct: 17 LCQPGDSNPTARKEPSTSVPESWKLSAQQQAFIDTFAEDEPKKQ 60 >UniRef50_D2TL36 Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TL36_CITRO Length = 55 Score = 58.3 bits (139), Expect = 7e-08, Method: Composition-based stats. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 2 VGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPKQ 55 V +Q S P CQ D+ +TK +PD W+LT QQQAFI+ F+E+D+ KQ Sbjct: 3 VHPQQRVSLPTCQSHDSVRKTK-SVRETVPDSWKLTRQQQAFIDSFSEEDKKKQ 55 >UniRef50_B4TX23 Putative uncharacterized protein n=21 Tax=Salmonella enterica RepID=B4TX23_SALSV Length = 56 Score = 41.8 bits (96), Expect = 0.006, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%) Query: 1 MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPK 54 + + + +P Q D++ +P W LT QQ+AFI+ FA++ K Sbjct: 3 ITSERERVVAPPIQSCDDDNTPDTTVFRSVPQHWTLTPQQRAFIDAFADEVSQK 56 >UniRef50_A9MWT2 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 RepID=A9MWT2_SALPB Length = 59 Score = 39.5 bits (90), Expect = 0.030, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%) Query: 15 HSDNETETKRECSVVIPDDWQLTSQQQAFIELFAEDDQPK 54 D++ +P W LT QQ+AFI+ FA++ K Sbjct: 20 SCDDDNTPDTTVFRSVPQHWTLTPQQRAFIDAFADEVSQK 59 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.292 0.119 0.319 Lambda K H 0.267 0.0353 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 181,433,292 Number of Sequences: 3077464 Number of extensions: 4362469 Number of successful extensions: 8204 Number of sequences better than 1.0e-01: 8 Number of HSP's better than 0.1 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8189 Number of HSP's gapped (non-prelim): 14 length of query: 55 length of database: 1,040,396,356 effective HSP length: 28 effective length of query: 27 effective length of database: 954,227,364 effective search space: 25764138828 effective search space used: 25764138828 T: 11 A: 40 X1: 16 ( 6.7 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (20.8 bits) S2: 86 (38.0 bits)