BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (189 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P28915 Uncharacterized protein ybfC n=33 Tax=Escherichi... 398 e-110 UniRef50_UPI00019F1819 hypothetical protein CATC2_20042 n=1 Tax=... 252 5e-66 >UniRef50_P28915 Uncharacterized protein ybfC n=33 Tax=Escherichia coli RepID=YBFC_ECOLI Length = 189 Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/189 (100%), Positives = 189/189 (100%) Query: 1 MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFPVLNNKAMWRWYQNEDI 60 MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFPVLNNKAMWRWYQNEDI Sbjct: 1 MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFPVLNNKAMWRWYQNEDI 60 Query: 61 GEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGTLQELINTAEKTAFLGDRF 120 GEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGTLQELINTAEKTAFLGDRF Sbjct: 61 GEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGTLQELINTAEKTAFLGDRF 120 Query: 121 RSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYARMTAHLPNKNESYECLIKIQ 180 RSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYARMTAHLPNKNESYECLIKIQ Sbjct: 121 RSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYARMTAHLPNKNESYECLIKIQ 180 Query: 181 HELIRSEEK 189 HELIRSEEK Sbjct: 181 HELIRSEEK 189 >UniRef50_UPI00019F1819 hypothetical protein CATC2_20042 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F1819 Length = 194 Score = 252 bits (643), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 118/194 (60%), Positives = 146/194 (75%), Gaps = 5/194 (2%) Query: 1 MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFPVLNNKAMWRWYQNEDI 60 MKRV+ LL ++F +A CE Q ++ CFTIF K +I S+FPVLN K +W+WY+ EDI Sbjct: 1 MKRVILCLLTALINFDALASCETQPENQVCFTIFTKNSIASSFPVLNVKPVWKWYRTEDI 60 Query: 61 GEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGTLQELINTAEKTAFLGDRF 120 GEYYWQTELGTCKN+KF P+GARLLI +GSLRLNEN +G+LQ+L++TAEK AF D Sbjct: 61 GEYYWQTELGTCKNDKFIPNGARLLIVLGSLRLNENPPAEGSLQDLLDTAEKKAFFDDEI 120 Query: 121 -----RSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYARMTAHLPNKNESYEC 175 RS IR QK+SSDP QLLA+ DN MVKYFK + TYARMTAHLP KNESYEC Sbjct: 121 ANIHVRSPIRGAFVQKRSSDPAQLLAIFDNPSMVKYFKTKNSTYARMTAHLPEKNESYEC 180 Query: 176 LIKIQHELIRSEEK 189 + +IQ+ ++RSE+K Sbjct: 181 ITEIQYGVLRSEKK 194 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P28915 Uncharacterized protein ybfC n=33 Tax=Escherichi... 356 3e-97 UniRef50_UPI00019F1819 hypothetical protein CATC2_20042 n=1 Tax=... 347 8e-95 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P28915 Uncharacterized protein ybfC n=33 Tax=Escherichia coli RepID=YBFC_ECOLI Length = 189 Score = 356 bits (913), Expect = 3e-97, Method: Composition-based stats. Identities = 189/189 (100%), Positives = 189/189 (100%) Query: 1 MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFPVLNNKAMWRWYQNEDI 60 MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFPVLNNKAMWRWYQNEDI Sbjct: 1 MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFPVLNNKAMWRWYQNEDI 60 Query: 61 GEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGTLQELINTAEKTAFLGDRF 120 GEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGTLQELINTAEKTAFLGDRF Sbjct: 61 GEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGTLQELINTAEKTAFLGDRF 120 Query: 121 RSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYARMTAHLPNKNESYECLIKIQ 180 RSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYARMTAHLPNKNESYECLIKIQ Sbjct: 121 RSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYARMTAHLPNKNESYECLIKIQ 180 Query: 181 HELIRSEEK 189 HELIRSEEK Sbjct: 181 HELIRSEEK 189 >UniRef50_UPI00019F1819 hypothetical protein CATC2_20042 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F1819 Length = 194 Score = 347 bits (891), Expect = 8e-95, Method: Composition-based stats. Identities = 118/194 (60%), Positives = 146/194 (75%), Gaps = 5/194 (2%) Query: 1 MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFPVLNNKAMWRWYQNEDI 60 MKRV+ LL ++F +A CE Q ++ CFTIF K +I S+FPVLN K +W+WY+ EDI Sbjct: 1 MKRVILCLLTALINFDALASCETQPENQVCFTIFTKNSIASSFPVLNVKPVWKWYRTEDI 60 Query: 61 GEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGTLQELINTAEKTAFLGDRF 120 GEYYWQTELGTCKN+KF P+GARLLI +GSLRLNEN +G+LQ+L++TAEK AF D Sbjct: 61 GEYYWQTELGTCKNDKFIPNGARLLIVLGSLRLNENPPAEGSLQDLLDTAEKKAFFDDEI 120 Query: 121 -----RSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYARMTAHLPNKNESYEC 175 RS IR QK+SSDP QLLA+ DN MVKYFK + TYARMTAHLP KNESYEC Sbjct: 121 ANIHVRSPIRGAFVQKRSSDPAQLLAIFDNPSMVKYFKTKNSTYARMTAHLPEKNESYEC 180 Query: 176 LIKIQHELIRSEEK 189 + +IQ+ ++RSE+K Sbjct: 181 ITEIQYGVLRSEKK 194 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.317 0.141 0.414 Lambda K H 0.267 0.0431 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 775,967,920 Number of Sequences: 3077464 Number of extensions: 32429244 Number of successful extensions: 68589 Number of sequences better than 1.0e-01: 2 Number of HSP's better than 0.1 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68583 Number of HSP's gapped (non-prelim): 4 length of query: 189 length of database: 1,040,396,356 effective HSP length: 121 effective length of query: 68 effective length of database: 668,023,212 effective search space: 45425578416 effective search space used: 45425578416 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 89 (38.8 bits)