BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (239 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax... 498 e-140 UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae R... 284 2e-75 UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=... 201 2e-50 UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B... 184 2e-45 UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8F... 181 1e-44 UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AH... 181 2e-44 UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus grou... 181 2e-44 UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillu... 175 9e-43 UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkalip... 170 4e-41 UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=... 169 8e-41 UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium ... 167 3e-40 UniRef50_C4TWB2 Transcriptional regulatory protein dcuR n=1 Tax=... 165 9e-40 UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=... 164 2e-39 UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S... 159 9e-38 UniRef50_P39486 Probable C4-dicarboxylate response regulator dct... 152 8e-36 UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A... 151 2e-35 UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcu... 147 4e-34 UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillu... 146 6e-34 UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dct... 146 7e-34 UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Py... 144 2e-33 UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringe... 143 5e-33 UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4I... 141 2e-32 UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacilla... 141 2e-32 UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clost... 140 5e-32 UniRef50_UPI00019732B8 two-component response regulator yufM n=1... 138 1e-31 UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX... 137 3e-31 UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=... 137 4e-31 UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=... 136 7e-31 UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermos... 135 9e-31 UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammapr... 135 1e-30 UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfi... 133 5e-30 UniRef50_C1TQF1 Response regulator of citrate/malate metabolism ... 133 5e-30 UniRef50_A3JET4 Response regulator of citrate/malate metabolism ... 133 6e-30 UniRef50_C1I809 Two-component system response regulator n=1 Tax=... 132 8e-30 UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=... 132 1e-29 UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillu... 130 3e-29 UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carb... 130 4e-29 UniRef50_C1SJK3 Response regulator of citrate/malate metabolism ... 129 6e-29 UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococ... 129 7e-29 UniRef50_A4SN90 Two-component system citrate/malate response reg... 128 2e-28 UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=... 127 2e-28 UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscol... 127 3e-28 UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=... 127 3e-28 UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax... 127 4e-28 UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbel... 126 6e-28 UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinom... 126 7e-28 UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=... 126 8e-28 UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacilla... 125 9e-28 UniRef50_C1TQ18 Response regulator of citrate/malate metabolism ... 125 2e-27 UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepI... 124 2e-27 UniRef50_C1SFW1 Response regulator of citrate/malate metabolism ... 124 3e-27 UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillu... 122 7e-27 UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamur... 122 7e-27 UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella R... 122 7e-27 UniRef50_Q03TV3 Response regulator of citrate/malate metabolism ... 122 1e-26 UniRef50_B7VN90 Response regulator of citrate/malate metabolism ... 122 1e-26 UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacilla... 120 4e-26 UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamur... 119 6e-26 UniRef50_C3JVF9 Response regulator receiver domain protein n=12 ... 119 7e-26 UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacill... 119 9e-26 UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinoco... 119 1e-25 UniRef50_C7MRE3 Response regulator of citrate/malate metabolism ... 119 1e-25 UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermos... 118 2e-25 UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=... 118 2e-25 UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax... 117 3e-25 UniRef50_A4FKM5 Two-component system response regulator n=31 Tax... 117 3e-25 UniRef50_A6W5B7 Two component transcriptional regulator, Fis fam... 116 7e-25 UniRef50_C5CAK7 Response regulator of citrate/malate metabolism ... 115 8e-25 UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Breviba... 115 8e-25 UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillu... 115 2e-24 UniRef50_A4FB60 Two-component system response regulator n=4 Tax=... 114 2e-24 UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacil... 114 3e-24 UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinom... 114 3e-24 UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus ... 113 4e-24 UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacilla... 112 1e-23 UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=... 112 1e-23 UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=... 110 3e-23 UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Co... 110 4e-23 UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Therman... 110 5e-23 UniRef50_UPI0001C42291 response regulator receiver/unknown domai... 110 6e-23 UniRef50_C2ASC2 Response regulator of citrate/malate metabolism ... 108 1e-22 UniRef50_C8NS01 Two component system response regulator n=6 Tax=... 107 2e-22 UniRef50_UPI00016939E4 two-component response regulator n=1 Tax=... 107 4e-22 UniRef50_B1W256 Putative two-component system response regulator... 106 7e-22 UniRef50_Q8NU70 Two-component system, response regulators consis... 105 1e-21 UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinoco... 105 1e-21 UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=... 104 2e-21 UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bro... 102 1e-20 UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya... 102 1e-20 UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism ... 101 2e-20 UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanob... 100 3e-20 UniRef50_B1W048 Putative two-component system response regulator... 100 5e-20 UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteob... 99 1e-19 UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammapro... 99 1e-19 UniRef50_UPI0001C32222 response regulator receiver and unknown d... 99 2e-19 UniRef50_Q0RQX5 C4-dicarboxylate two-component system response r... 97 6e-19 UniRef50_B8K774 Response regulator of citrate/malate metabolism ... 96 1e-18 UniRef50_C9Z825 Putative two component system response regulator... 95 2e-18 UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinoc... 94 3e-18 UniRef50_C4X351 Two-component response regulator for citrate n=2... 94 3e-18 UniRef50_UPI0001BC2D80 two-component system response regulator n... 93 6e-18 UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax... 93 8e-18 UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geoderm... 93 9e-18 UniRef50_C2IT51 Response regulator of citrate/malate metabolism ... 92 1e-17 UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillu... 92 1e-17 UniRef50_B2GLU0 Putative CriR family two-component response regu... 92 2e-17 UniRef50_UPI000050FA19 putative two-component response regulator... 91 4e-17 UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=... 91 4e-17 UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bro... 91 5e-17 UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Therman... 91 5e-17 UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodo... 89 1e-16 UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus D... 88 2e-16 UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=... 88 3e-16 UniRef50_UPI0001C35A14 two component transcriptional regulator, ... 75 2e-12 UniRef50_A9WRA3 Transcriptional regulatory protein n=1 Tax=Renib... 74 6e-12 UniRef50_C7PS97 Two component transcriptional regulator, LytTR f... 70 5e-11 UniRef50_C6CUM4 Two component transcriptional regulator, AraC fa... 69 2e-10 UniRef50_UPI0001C36B1C two component transcriptional regulator, ... 66 1e-09 UniRef50_Q2S4J5 Response regulator n=1 Tax=Salinibacter ruber DS... 65 1e-09 UniRef50_C0QJP8 Sigma-54 dependent DNA-binding response regulato... 65 2e-09 UniRef50_C7PM85 Two component transcriptional regulator, LytTR f... 64 5e-09 UniRef50_C5ET72 Predicted protein n=1 Tax=Clostridiales bacteriu... 63 6e-09 UniRef50_D2QDN3 Two component transcriptional regulator, LytTR f... 63 7e-09 UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillu... 63 9e-09 UniRef50_C2HBK3 AraC family response regulator n=19 Tax=Enteroco... 62 1e-08 UniRef50_B5IGK2 Response regulator receiver domain protein n=2 T... 62 2e-08 UniRef50_Q3SW32 Two component transcriptional regulator, LuxR fa... 62 2e-08 UniRef50_A0L4H3 Two component, sigma54 specific, transcriptional... 62 2e-08 UniRef50_A6LST7 Response regulator receiver protein n=4 Tax=Clos... 62 2e-08 UniRef50_A6W0I0 Response regulator receiver modulated CheB methy... 62 2e-08 UniRef50_A7VVZ1 Putative uncharacterized protein n=1 Tax=Clostri... 61 3e-08 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 61 3e-08 UniRef50_Q8A855 Two-component system response regulator n=1 Tax=... 61 3e-08 UniRef50_C6IWZ0 Two component transcriptional regulator n=1 Tax=... 61 4e-08 UniRef50_C7R8Q4 Two component transcriptional regulator, Fis fam... 60 5e-08 UniRef50_D2QHW7 Two component transcriptional regulator, LytTR f... 60 6e-08 UniRef50_Q2S053 LytTr DNA-binding domain family n=2 Tax=Rhodothe... 60 7e-08 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 60 8e-08 UniRef50_C7GE48 DNA-binding response regulator, AraC family n=1 ... 60 8e-08 UniRef50_C8X529 Two component, sigma54 specific, transcriptional... 60 8e-08 UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/res... 60 9e-08 UniRef50_Q2FS60 Response regulator receiver domain protein (CheY... 60 9e-08 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 59 1e-07 UniRef50_C0ZI44 Two-component response regulator n=1 Tax=Breviba... 59 1e-07 UniRef50_B9YDA4 Putative uncharacterized protein n=1 Tax=Holdema... 59 1e-07 UniRef50_UPI0001788E64 two component transcriptional regulator, ... 59 1e-07 UniRef50_C5EPK7 Two-component response regulator n=1 Tax=Clostri... 59 1e-07 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 59 2e-07 UniRef50_Q1NQ80 Sensor protein n=1 Tax=delta proteobacterium MLM... 59 2e-07 UniRef50_Q3IJW8 Putative transcriptional regulator sensing dicar... 59 2e-07 UniRef50_A3W3Q3 PAS:GGDEF protein n=1 Tax=Roseovarius sp. 217 Re... 59 2e-07 UniRef50_B1ZXM6 Two component, sigma54 specific, transcriptional... 59 2e-07 UniRef50_D2QI00 Two component transcriptional regulator, LytTR f... 59 2e-07 UniRef50_C0INH2 Two-component system response regulator protein ... 58 2e-07 UniRef50_Q48GV3 DNA-binding response regulator, LuxR family n=14... 58 2e-07 UniRef50_C7PR40 Two component transcriptional regulator, LytTR f... 58 2e-07 UniRef50_A1ZK58 Two-component system response regulator protein ... 58 2e-07 UniRef50_A5FCU0 Two component transcriptional regulator, LytTR f... 58 3e-07 UniRef50_A5G221 Response regulator receiver protein n=10 Tax=Alp... 58 3e-07 UniRef50_C6CWR9 Two component transcriptional regulator, AraC fa... 58 3e-07 UniRef50_A7B0I4 Putative uncharacterized protein n=1 Tax=Ruminoc... 58 3e-07 UniRef50_Q2IIQ2 Two component transcriptional regulator, LuxR fa... 58 3e-07 UniRef50_A7GNF5 Response regulator receiver protein n=98 Tax=cel... 58 3e-07 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 58 3e-07 UniRef50_A1ZFR4 Two-component system response regulator protein ... 58 3e-07 UniRef50_Q0JZE8 Response regulator, OmpR-family n=2 Tax=Cupriavi... 58 3e-07 UniRef50_Q39UC6 Response regulator receiver (CheY-like) modulate... 58 3e-07 UniRef50_C6D6D4 Two component transcriptional regulator, AraC fa... 57 4e-07 UniRef50_A8UME7 Two-component system response regulator protein ... 57 4e-07 UniRef50_A8UFS0 Two-component system response regulator n=2 Tax=... 57 4e-07 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 57 4e-07 UniRef50_UPI0001692E78 DNA-binding response regulator, AraC fami... 57 4e-07 UniRef50_C7PE44 Two component transcriptional regulator, LytTR f... 57 5e-07 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 57 5e-07 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 57 6e-07 UniRef50_Q4L8V4 Sensory transduction protein lytR n=60 Tax=Bacil... 57 6e-07 UniRef50_Q1Z5F6 Hypothetical transcriptional regulator n=3 Tax=P... 57 6e-07 UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20... 57 7e-07 UniRef50_C7PT73 Two component transcriptional regulator, LytTR f... 57 7e-07 UniRef50_B1I2H5 Response regulator receiver modulated metal depe... 57 7e-07 UniRef50_Q97DT2 Response regulator (CheY-like receiver domain co... 57 8e-07 UniRef50_UPI0001C363ED two component AraC family transcriptional... 56 8e-07 UniRef50_C6CUI4 Two component transcriptional regulator, AraC fa... 56 8e-07 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 56 9e-07 UniRef50_C0QMI5 Two-component response regulator fusion protein ... 56 9e-07 UniRef50_B9L6B1 Diguanylate cyclase/phosphodiesterase n=1 Tax=Na... 56 9e-07 UniRef50_B8DRE4 Two component, sigma54 specific, transcriptional... 56 1e-06 UniRef50_C7GBP3 DNA-bindng response regulator, AraC family n=2 T... 56 1e-06 UniRef50_A6LTH8 Two component transcriptional regulator, LytTR f... 56 1e-06 UniRef50_Q0EYZ1 Putative uncharacterized protein n=1 Tax=Maripro... 56 1e-06 UniRef50_C6HXT4 Response regulator receiver protein n=3 Tax=Lept... 56 1e-06 UniRef50_C6IXK5 Two component transcriptional regulator n=1 Tax=... 56 1e-06 UniRef50_C6IWB5 Predicted protein n=1 Tax=Paenibacillus sp. oral... 56 1e-06 UniRef50_Q1N0N5 Response regulator n=1 Tax=Bermanella marisrubri... 56 1e-06 UniRef50_A4CMC3 Two component, sigma54 specific, transcriptional... 56 1e-06 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 56 1e-06 UniRef50_UPI00017896CE two component transcriptional regulator, ... 56 1e-06 UniRef50_C5CE55 Response regulator receiver modulated serine pho... 56 1e-06 UniRef50_B0NHY9 Putative uncharacterized protein n=2 Tax=Clostri... 56 1e-06 UniRef50_A9WEK6 Sensor protein n=3 Tax=Chloroflexus RepID=A9WEK6... 56 1e-06 UniRef50_Q04RB2 Response regulator n=5 Tax=Leptospira RepID=Q04R... 56 1e-06 UniRef50_C0QLH6 Sensor protein n=2 Tax=Deltaproteobacteria RepID... 56 1e-06 UniRef50_Q1NJD5 Sensor protein n=4 Tax=Deltaproteobacteria RepID... 56 1e-06 UniRef50_UPI0001744C34 response regulator with a HTH DNA-binding... 55 1e-06 UniRef50_C1SI10 Response regulator with CheY-like receiver, AAA-... 55 1e-06 UniRef50_A6LWZ6 Sensor protein n=2 Tax=Clostridium RepID=A6LWZ6_... 55 1e-06 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 55 1e-06 UniRef50_B7AIC8 Sensor protein n=6 Tax=Bacteroidales RepID=B7AIC... 55 1e-06 UniRef50_B3PDX5 Response regulator n=1 Tax=Cellvibrio japonicus ... 55 1e-06 UniRef50_A3WHL3 Two-component response regulator n=1 Tax=Erythro... 55 2e-06 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 55 2e-06 UniRef50_Q30WB8 Two component transcriptional regulator, Fis fam... 55 2e-06 UniRef50_Q0QJA1 Putative response regulator n=1 Tax=Pseudoaltero... 55 2e-06 UniRef50_C0QLH7 Sensor protein n=1 Tax=Desulfobacterium autotrop... 55 2e-06 UniRef50_D1PQR0 DNA-binding response regulator, AraC family n=1 ... 55 2e-06 UniRef50_B0SFX2 Response regulator n=2 Tax=Leptospira biflexa se... 55 2e-06 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 55 2e-06 UniRef50_Q1GSC2 Response regulator receiver modulated CheB methy... 55 2e-06 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 55 2e-06 UniRef50_A8UEA9 Two-component system response regulator n=1 Tax=... 55 2e-06 UniRef50_C0EVX4 Putative uncharacterized protein n=5 Tax=Clostri... 55 2e-06 UniRef50_A9DKT5 Two-component system regulatory protein n=1 Tax=... 55 2e-06 UniRef50_C6D6B5 Two component transcriptional regulator, AraC fa... 55 3e-06 UniRef50_B3EF08 Sensor protein n=4 Tax=Chlorobium/Pelodictyon gr... 55 3e-06 UniRef50_A3UEG7 Two-component system regulatory protein n=1 Tax=... 55 3e-06 UniRef50_A9KRS1 Two component transcriptional regulator, AraC fa... 55 3e-06 UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillu... 54 3e-06 UniRef50_C6CVW8 Two component transcriptional regulator, AraC fa... 54 3e-06 UniRef50_C0FZV1 Putative uncharacterized protein n=1 Tax=Rosebur... 54 3e-06 UniRef50_D2L834 Putative two component, sigma54 specific, transc... 54 3e-06 UniRef50_UPI0001788C36 two component transcriptional regulator, ... 54 3e-06 UniRef50_A8RI10 Putative uncharacterized protein n=1 Tax=Clostri... 54 3e-06 UniRef50_A6NQ55 Putative uncharacterized protein n=1 Tax=Bactero... 54 3e-06 UniRef50_A1ZI08 Two-component system response regulator n=3 Tax=... 54 3e-06 UniRef50_A6DTE3 Sensor protein n=1 Tax=Lentisphaera araneosa HTC... 54 4e-06 UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminoc... 54 4e-06 UniRef50_C4KCC3 Two component, sigma54 specific, transcriptional... 54 4e-06 UniRef50_O27792 Sensory transduction regulatory protein n=1 Tax=... 54 4e-06 UniRef50_C7IFK0 Two component transcriptional regulator, AraC fa... 54 4e-06 UniRef50_C6XVI3 Response regulator receiver n=2 Tax=Sphingobacte... 54 4e-06 UniRef50_C6XTW9 LytTr DNA-binding region n=3 Tax=Sphingobacteria... 54 4e-06 UniRef50_Q12QZ1 Transcriptional regulator, LytR/AlgR family n=1 ... 54 4e-06 UniRef50_B8I4I1 Two component transcriptional regulator, AraC fa... 54 4e-06 UniRef50_C6W252 Two component transcriptional regulator, LytTR f... 54 4e-06 UniRef50_C4T682 Acetoacetate metabolism regulatory protein atoC ... 54 5e-06 UniRef50_Q1GI23 Two component transcriptional regulator, LuxR fa... 54 5e-06 UniRef50_C6VTD2 Two component transcriptional regulator, LytTR f... 54 5e-06 UniRef50_A8ZVW9 Putative two component, sigma54 specific, transc... 54 5e-06 UniRef50_A1ZP21 Response regulator of the LytR/AlgR family n=1 T... 54 5e-06 UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryante... 54 5e-06 >UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax=Gammaproteobacteria RepID=DCUR_ECOL6 Length = 239 Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/239 (99%), Positives = 238/239 (99%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ Sbjct: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 KENGLDLLPVLHNARCKSDVIVISSAADA TIKDSLHYGVVDYLIKPFQASRFEEALTGW Sbjct: 61 KENGLDLLPVLHNARCKSDVIVISSAADAVTIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS Sbjct: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ Sbjct: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 >UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae RepID=B1LPU5_ECOSM Length = 241 Score = 284 bits (727), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 136/239 (56%), Positives = 175/239 (73%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLI+DDD +VA++ RR V Q P F+CCG A +L +AKEII + DLILLD+Y+ Sbjct: 1 MNNVLIVDDDILVADVIRRIVEQTPAFKCCGIALSLGQAKEIISVNKKLADLILLDLYIN 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 K+NGLDLLP LH+ CKSDVIVIS+A D+ATIKDSLHYGV DYLIKPF SR ++LT W Sbjct: 61 KDNGLDLLPFLHSIHCKSDVIVISAADDSATIKDSLHYGVSDYLIKPFHISRLVDSLTRW 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + KK LE + ++Q+ELD L H N + R LPKGL+ TLR +C+WID HQ +F+ Sbjct: 121 KHKKTLLESQKIFNQSELDLLTHKIIPNTEKIRHLPKGLSTDTLRIICRWIDEHQHKKFT 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 +ELA+ + ISR+SCRKY+IWLV+CHIL GVTGRP YRY I+ ++Y +K+Y + Sbjct: 181 LNELASGIKISRISCRKYIIWLVSCHILAFDFSCGVTGRPAYRYWIRHQYYPYIKKYSE 239 >UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=Firmicutes RepID=MALR_BACSU Length = 235 Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 152/239 (63%), Gaps = 5/239 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLI++DD MV ELN+RY++QI GFQ G AS+ + A I+ + IDLILLDIYM Sbjct: 1 MINVLIVEDDPMVGELNKRYLSQIDGFQLKGIASSFQSALHIL--GEHHIDLILLDIYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +NGL+LL L DVIVIS+A++ IK +L YG VDYLIKPF+ RF+ AL+ + Sbjct: 59 GKNGLELLTELRAQNEAVDVIVISAASELDVIKKTLRYGAVDYLIKPFEFERFQTALSDY 118 Query: 121 RQKKMALEKHQYYDQAELD-QLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R+K+ H+ Q ELD +L + E+ +LPKGLT TL+ + I + ++ F Sbjct: 119 RRKQKVYSTHRNMSQKELDAELFQKKEATEK--VQLPKGLTKSTLKLIWSSIQSFENESF 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 +T++LA IS+VS RKYL +L + +L + YG GRPV++Y + + + +KQY Sbjct: 177 TTEDLAKHTEISQVSIRKYLKFLEDIQVLNVEMAYGTIGRPVFQYNVNNSNINGIKQYL 235 >UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B3M8_9BACI Length = 235 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 100/241 (41%), Positives = 145/241 (60%), Gaps = 9/241 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINV+I++DD MVAE+N+RY+A++ GF+ +A ++++A ++ D I LILLDIYM Sbjct: 1 MINVMIVEDDPMVAEINKRYLAKVEGFRLAASARSVDEAVSLLEKED--IQLILLDIYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 GL+L+ L ++DVI+IS+A D I+ +L GVVDYLIKPF+ RF ALT + Sbjct: 59 GRLGLELVTYLRKNELETDVIIISAAKDMDRIRQALRSGVVDYLIKPFEFERFNAALTAY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDP---RRLPKGLTPQTLRTLCQWIDAHQDY 177 Q+ EK + Q ELD + ++P LPKGLT TL+ + + + ++ Sbjct: 119 EQQSRFAEKREEVTQQELDSHLL----RREEPSVVEELPKGLTKDTLKQVWEAVQELKEG 174 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 FSTDE+A V +SRVS RKYL +L IL + YG GRPVY++ L+K + Sbjct: 175 PFSTDEMAEAVGVSRVSARKYLNFLKELGILDVKVIYGTIGRPVYQHEYNPYKEHLIKNF 234 Query: 238 C 238 Sbjct: 235 L 235 >UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8FGV9_BACP2 Length = 235 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 147/239 (61%), Gaps = 5/239 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLI++DD MV ELN+RY+ QI GF+ G A++ ++A +++ I L+LLDIYM Sbjct: 1 MINVLIVEDDPMVGELNKRYLTQIEGFELKGIATSFQQALDML--KTEAIHLVLLDIYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +NGL LL + DVIVIS+A + ++ ++ G VDYLIKPF+ RF+ AL+ + Sbjct: 59 GQNGLALLSEIRKQNHSVDVIVISAANEVDVVQQTMRNGAVDYLIKPFEFERFQSALSEY 118 Query: 121 RQKKMALEKHQYYDQAELD-QLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++K + Q +LD +L H + E+ LPKGLT TL+ + I + F Sbjct: 119 KRKHALYQTMNSISQNDLDAKLFHKKAETEK--VLLPKGLTKSTLKLIWTSIQSFGHQAF 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 +T++LAN IS+VS RKYL +L + ++ + YG GRPV++Y++ + +L++QY Sbjct: 177 TTEDLANHTEISQVSIRKYLKFLEDIEVVDVEMAYGTIGRPVFQYKLSTTNMNLIQQYL 235 >UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AHC9_BACMY Length = 231 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/222 (43%), Positives = 142/222 (63%), Gaps = 3/222 (1%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 +I++DD MVA LN+ Y+ Q+ GF+ A+++++A EI+ ++ ID ILLDI+M + G Sbjct: 1 MIVEDDPMVAMLNKHYLEQVGGFELVHIANSVKEAVEIL--KESSIDFILLDIFMPVDTG 58 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 +LL + N + DVI+IS+ D +IK +L YGVVDYLIKPF RF+EALT +R+K Sbjct: 59 FELLLHIRNQEKEIDVIMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTAYREKF 118 Query: 125 MALEKHQYYDQAELDQLIHGSSSNEQ-DPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 + +++ Q Q+ELD LI E + LPKGLT QTL+ + + I++ F+TDE Sbjct: 119 IFMKEQQKISQSELDTLILQKEKVETYVNKELPKGLTRQTLQLIWKQIESLHGQAFTTDE 178 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +A V ISRVS RKY+++L +L + Y GRPV + R Sbjct: 179 MAQLVGISRVSIRKYVMFLTEIGVLENEMVYQHVGRPVSKLR 220 >UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus group RepID=Q73DS2_BACC1 Length = 235 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 141/226 (62%), Gaps = 3/226 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLI++DD MVA LN Y+ Q GF+ ++++ A E++ S +DL+LLDI+M Sbjct: 1 MIKVLIVEDDPMVAMLNTHYLEQAGGFELVQAVNSVKSAIEVLEASR--VDLVLLDIFMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +E G +LL + N + D+++IS+ D +IK +L YGVVDYLIKPF RF+EALT + Sbjct: 59 EETGFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTIY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDP-RRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R+K +++ Q Q+ELD LI E + LPKGLT QT++ + + I++ F Sbjct: 119 REKLTFMKEQQKISQSELDSLILQKEKREPTVMKELPKGLTKQTMQLIWKKIESLNGRAF 178 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +TDE+A V +SRVS RKY+++L +L + Y GRPV + R Sbjct: 179 TTDEMAQLVGVSRVSIRKYVMFLTEIGVLENEMVYQHVGRPVSKLR 224 >UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJK0_BACSK Length = 236 Score = 175 bits (444), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 146/238 (61%), Gaps = 2/238 (0%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLI++DD MVA + + Y+ +PGFQ A +E+AK+ + + T I L+LLD+YM Sbjct: 1 MIQVLIVEDDPMVAAVVKSYLRDVPGFQVAAEAGGVEEAKQHLRENKT-IQLVLLDVYMP 59 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 ENGL LLP L + ++DVI++++A+D +I+ +L +G VDY++KP+Q SRF++AL + Sbjct: 60 GENGLSLLPYLRENKIEADVILMTAASDKESIETALRFGAVDYILKPYQFSRFQKALHAY 119 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + K + DQ +LD+ + + + LPKGLT +TL+ + + I FS Sbjct: 120 QSRYNFFRKEETTDQKQLDETFF-EKKHTLEKQTLPKGLTKETLQEVWEAIRQVGQDSFS 178 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 T+++A +SRVS +KYL +L +L YG GRP++ YRI ++ +K Y Sbjct: 179 TEDIALHARLSRVSVKKYLTFLKELDVLQLQPTYGSIGRPIHIYRIDKDNVRKIKPYL 236 >UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TMU0_ALKMQ Length = 235 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 143/227 (62%), Gaps = 4/227 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI+VLI++DD MVA+LN+ YV + GF+ G A+ EKA + I +++ +DLI+LDI+M Sbjct: 1 MISVLIVEDDQMVAKLNKHYVESVQGFEVVGVANDGEKAWKFINHNN--VDLIILDIHMA 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 K +GL L + ++DVI +++A ++ TI + L G VDYLIKPF+ R + AL + Sbjct: 59 KVDGLAFLKEMRKKLIQADVIFVTAAQESETIDEGLKLGAVDYLIKPFEYERMKSALENY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 ++ L K Q ++D++ + ++ Q P LPKGL +TL+ + +++ H+D + Sbjct: 119 ERRYHLLRKEHVIKQEDIDKITTKNPTHNQRP--LPKGLHEKTLKKVRRYMQDHKDELLT 176 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +DE+A E+ SRV+ R+YL +LV+ L I YG GRP +Y+++ Sbjct: 177 SDEVAAELEFSRVTVRRYLEYLVSIGELTLEIEYGSIGRPSNKYKMR 223 >UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42EA9 Length = 224 Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 92/215 (42%), Positives = 131/215 (60%), Gaps = 7/215 (3%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA N++YV +I GFQ G A ++AK+++ +D I L+LLDIYM +NGL+LL + Sbjct: 1 MVASFNKQYVEEIKGFQLAGLAKCFDEAKQLLEEND--IQLLLLDIYMPGKNGLELLQYI 58 Query: 72 HNARCKS-DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKH 130 + DVI++++A D +I+ +L YG VDY+IKPF+ RF +ALT +R+K L+ Sbjct: 59 RKETAYNVDVILVTAADDVDSIQTALRYGAVDYIIKPFEFERFNKALTTYREKHSLLKAQ 118 Query: 131 QYYDQAELD-QLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVN 189 Q Q ELD ++H E+ LPKGLTP TL+ + I ++ F+TDE+A V Sbjct: 119 QSLKQEELDASILH---QQEKKNMTLPKGLTPNTLQVIAAAIVDKENEPFTTDEIAETVQ 175 Query: 190 ISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 ISRVS RKY+ +L L + YG GRP Y Y Sbjct: 176 ISRVSVRKYIKYLKEIGALAERMTYGAIGRPFYVY 210 >UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium RepID=A6M0I4_CLOB8 Length = 231 Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 138/232 (59%), Gaps = 6/232 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI +I++DD MV ++N +++ +I GF + L +AKE + +DLILLDI++ Sbjct: 1 MIKTMIVEDDPMVRQINSKFLKKIEGFSLEKAVANLSEAKEFLMQKQ--VDLILLDIFLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 ENG+DLL L SDVI+I++ +KD+ YGVVDYLIKPF RF E+L + Sbjct: 59 NENGIDLLKWLRQNEILSDVILITADKSVERVKDAFRYGVVDYLIKPFTFERFNESLNIF 118 Query: 121 RQKKMALEKHQYYDQAELDQLI----HGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 R++ + E Q +Q++LD+ I + ++N + L KGL T ++ ++ ++ Sbjct: 119 RERLNSFENSQTMEQSDLDKFILSNKNKKTNNSETKPNLEKGLNKYTYNSIANELNNTKE 178 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 F+T++L+ ++ I++V+ RKYL ++ L I YG GRP+Y+Y+I+ Sbjct: 179 EYFTTEDLSEKLGIAKVTVRKYLDYMSKQGELEKIIEYGKIGRPLYKYKIKG 230 >UniRef50_C4TWB2 Transcriptional regulatory protein dcuR n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TWB2_YERKR Length = 162 Score = 165 bits (418), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 77/151 (50%), Positives = 113/151 (74%) Query: 7 IDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLD 66 +DDDAMVAELN+ Y+ Q+ GF CCG+ S+L++A++ + ++ PIDL+LLD++M+++NGLD Sbjct: 1 MDDDAMVAELNKCYLNQVAGFNCCGSVSSLQQARDHLMAAEHPIDLVLLDVFMRQDNGLD 60 Query: 67 LLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMA 126 LLPVL +DVIVISSA D TIK +L YGVVDYLIKPFQ SRFEEAL+ +R+K+ Sbjct: 61 LLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALSTYREKQSL 120 Query: 127 LEKHQYYDQAELDQLIHGSSSNEQDPRRLPK 157 L + +Y Q ++D L+ S+ + +++ + Sbjct: 121 LGQREYCAQEDVDSLLRRSNVTPAERKKIAQ 151 >UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42F37 Length = 231 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 144/233 (61%), Gaps = 12/233 (5%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA+ N +V +IP F+ G A +E+ + ++ +DLILLD+YM ENGLDLL L Sbjct: 1 MVAKFNAIFVERIPEFKLVGVARGIEEG--WTYLNEEAVDLILLDVYMTNENGLDLLMEL 58 Query: 72 HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQ 131 DVIV+SSA D +I+ +L +G VDYLIKPF+ RF++AL ++Q ++K + Sbjct: 59 RRENHPVDVIVVSSANDRGSIQTALRFGAVDYLIKPFEFDRFQDALLRYKQTFQDMKK-E 117 Query: 132 YYDQAELDQL-IHGSSSNEQDPRR---LPKGLTPQTLRTLCQWIDAHQDYEFSTDELANE 187 Q E+D+L + +SN+ P+ LPKG+T +T + + I+ H D+ FST++L + Sbjct: 118 AIQQEEVDRLFLTKGNSNKNVPKADLPLPKGITKETYIRVLREINKHSDW-FSTNDLVDA 176 Query: 188 VNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHY----SLLKQ 236 ISRVS RKYL +L N IL + Y TGRP+++Y++ + Y S+LK+ Sbjct: 177 TGISRVSLRKYLQYLTNSDILLFDVDYQRTGRPLHQYKLTNQGYDYIVSVLKE 229 >UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S242_RHOSR Length = 224 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M VL++DDD MVAE++RR+V + PGF G A T A E + + DL+LLD+Y+ Sbjct: 1 MYEVLVVDDDFMVAEIHRRFVDKTPGFTTVGVARTAADALESVRTAHP--DLVLLDVYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GLD+L L VI+I++A + T+ +LH G DYL+KPF ++ +E L + Sbjct: 59 DMSGLDVLQRLRAEGNAVGVIMITAAREIDTVSRALHGGASDYLVKPFDYTQLQEKLENF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R++ ALE DQ+ +D L G N + P RLPKGL+ +T R + + + E S Sbjct: 119 RRRARALESQSGADQSLIDSLFGGKGKNPE-PSRLPKGLSAETGRLVLDILRSKG--ELS 175 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + E A +SRVS R+YL ++ +L + YG GRPV RYR Sbjct: 176 STECAELAGLSRVSVRRYLEHYLSEGLLEVRLEYGGAGRPVRRYR 220 >UniRef50_P39486 Probable C4-dicarboxylate response regulator dctR n=8 Tax=Bacillaceae RepID=DCTR_BACME Length = 228 Score = 152 bits (385), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 137/224 (61%), Gaps = 5/224 (2%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 VL+I+DD MV E+NR+++ Q+ GF AS + ++I P DL ++D+YM ++ Sbjct: 8 VLLIEDDPMVQEVNRQFIEQVEGFTVIAAASNGLEGVQLI-KQHQP-DLTIIDMYMPSQD 65 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 GL L + K+DVI +++A+D T++ L YG VDY++KPF+ R ++AL +R Sbjct: 66 GLTTLQQIRANGYKTDVIAVTAASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQYRSF 125 Query: 124 KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 ++ + + ++ Q+ELD ++ + D LPKGL TLR + Q++ + Q++ S +E Sbjct: 126 QVKISQKEHITQSELDSMLFQQFEEKAD--LLPKGLNAVTLRRIQQYL-SEQNHPISAEE 182 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +A+ V I+RV+ R+YL +L + L S+ YG GRP+ RY ++ Sbjct: 183 VADGVGIARVTARRYLEFLEQENELKLSVEYGRVGRPINRYMLK 226 >UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A5D2L3_PELTS Length = 225 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD MV E+NR ++ +PGF+ G A + +A E+I + DL+LLDIY+ Sbjct: 4 IGVLIVEDDPMVVEVNRGFINAVPGFKVVGVARSGREAIEMI--KELSPDLVLLDIYLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL L + +DVI++++A DA TI+ YG +DY+IKPF+ +R + AL + Sbjct: 62 VDGLTTLQEIRRIGLPTDVIIVTAAQDAETIQRGFRYGSIDYIIKPFKFTRLKAALNSYA 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + +QAE+D L G +Q +PKGL TL+ + ++ + S Sbjct: 122 TLYNRFRRQAQMNQAEIDSLTLG--RGQQVDEGVPKGLNEVTLKQVFLYL-LKEGVALSA 178 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +E+A V ++RV+ R+YL ++ + + YG GRPV RYRI+ Sbjct: 179 EEVAEGVGLARVTARRYLDYMEKSGKVVLELQYGSVGRPVNRYRIK 224 >UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcus faecium RepID=C9AP26_ENTFC Length = 238 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 130/240 (54%), Gaps = 5/240 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLII+DD MVAELNR +V IP + +E+ K+ + DL+LLD+YM Sbjct: 2 MTNVLIIEDDPMVAELNRTFVESIPNMNVIESFRNVEEGKKYFRQKNA--DLLLLDVYMP 59 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 E+G+ L L VI+I++A D TIK+ + YG +DYLIKPF RF+ A+ + Sbjct: 60 GESGIHFLSWLRQQGNDIPVILITAADDIETIKNVIRYGALDYLIKPFTLQRFQLAIEKY 119 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPR--RLPKGLTPQTLRTLCQWIDAHQDYE 178 ++ + DQ +DQ+ + ++ + P LPKGL+ TL+ + I ++ Sbjct: 120 LAFSQTIQTTEKADQKLIDQVFNHTTPIHETPSFIDLPKGLSKLTLKKISASI-LKEETI 178 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 FST ELA + +SR+S +KYL +LV IL I Y GRP+ Y + L YC Sbjct: 179 FSTKELAQKSALSRISVKKYLNFLVEQDILNERIRYLEIGRPLTCYELTKNGRKKLTDYC 238 >UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WAT4_BACSK Length = 247 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 137/236 (58%), Gaps = 9/236 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +I V +I+DD VA +R +++++ GF+ G A TLE+ +I + P DL+LLD+++ Sbjct: 16 VIKVAVIEDDIDVARFHRLFLSKVAGFELIGEAHTLEQGVHLI-QTQKP-DLLLLDVFVG 73 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +ENGLD+L + +DVI+I+SA DA T++ YGVVDYLIKPF +RF+EAL + Sbjct: 74 QENGLDVLKRIRAEDTNTDVILITSANDAKTVQTGSRYGVVDYLIKPFSFARFQEALNRY 133 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQT-LRTLCQWIDAHQDYEF 179 R + L+ + + Q ++D+L+H ++ LPKG+ +T +R L I+A D Sbjct: 134 RASQ--LDANASFTQQDVDRLLH--KGGQRKVYALPKGIAKETAIRVLSCLIEA--DDSL 187 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLK 235 + EL IS VS RKY+ + ++ + Y +GRP+ Y+ E LK Sbjct: 188 AAAELEARTEISHVSLRKYMRFFEEEQLVEKELVYQSSGRPLQTYKASPEAALFLK 243 >UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dctR n=1 Tax=Bacillus halodurans RepID=DCTR_BACHD Length = 230 Score = 146 bits (368), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 132/229 (57%), Gaps = 8/229 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +I VL+I+DD MV E+NR +V ++ GF GT +T E+ ++ + DLILLDI+M Sbjct: 6 LIRVLLIEDDPMVQEVNRMFVEKLSGFTIVGTTATGEEG--MVKTRELQPDLILLDIFMP 63 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 K++GL + + D+I +++A D TIK L YGV+DYL+KPF R + ALT + Sbjct: 64 KQDGLSFIKQIREQYIDVDIIAVTAANDTKTIKTLLRYGVMDYLVKPFTFERLKAALTQY 123 Query: 121 RQKKMALEKHQYYDQAELDQLI--HGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 + ++K Q LD++I + +N D LPKGL TL+ + + ++ D Sbjct: 124 EEMFRKMQKEAELSQDSLDEMIKQKQAQANMDD---LPKGLHAHTLQQVIERLE-ELDEP 179 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 S +E+ +V ++RV+ R+YL +L + + + YG GRP+ Y+++ Sbjct: 180 KSAEEIGRDVGLARVTVRRYLNYLESVGQVEMDLTYGSIGRPIQTYKLK 228 >UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1R1_9BACT Length = 248 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 132/231 (57%), Gaps = 5/231 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEII-FNSDTPIDLILLDIYM 59 MI +I++DD MVA++NRRY+ Q A+ + K+ + + D DLI+LD+YM Sbjct: 1 MIKTIIVEDDPMVAQINRRYLDTANDIQV---AAVFDNGKDALAYIEDEEPDLIILDVYM 57 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGL+LL + A +SDVI++++A D ++++L G+VDYL+KPF+ RF EA+ Sbjct: 58 PVMNGLELLREIRKADIQSDVIMVTAANDVKNVEEALRLGIVDYLVKPFEYERFMEAIEK 117 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRR-LPKGLTPQTLRTLCQWIDAHQDYE 178 +R+K L+ +Q +D L+ + Q P R L KGL +TL + +D + Sbjct: 118 YRKKAHVLKDASTLNQDAIDALVSVGAPQPQAPARDLKKGLQQRTLDMIRSHLDKMKGET 177 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 + D LA V +S+V+ R+YL +L + +S+ Y GRP +Y I+ + Sbjct: 178 CTCDTLAGVVGLSKVTVRRYLNYLAEIGEIDSSVDYETGGRPCIKYFIRPD 228 >UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringens RepID=Q0SVM1_CLOPS Length = 222 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 132/221 (59%), Gaps = 6/221 (2%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 +LI++DD MVA +N+R++ + G T E+ +++ + IDLILLD+Y+ K+N Sbjct: 5 ILIVEDDPMVALINKRFLENMGFKDILGPVQTEEEIIQLLDKEN--IDLILLDVYLPKKN 62 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 G+D+L L + +DVI+I++A +K + YGV DYL+KPF+ RFEEA+ ++QK Sbjct: 63 GIDILKSLRYKKYLTDVIMITAANSVEEVKRAFAYGVTDYLVKPFEFERFEEAINKYKQK 122 Query: 124 KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 L K + Q ++D + S + ++ LPKGL +TL + +++ ++ ++ E Sbjct: 123 NNLLNKREALSQQDIDVI----SKSLEEKIELPKGLNQKTLDRIMEFLKENKGKVWTLRE 178 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 +A E+ IS V+ +KY+ +L + + ++ G GRP Y+Y Sbjct: 179 IAYELKISNVTIKKYMDYLEDIKKVNVTLTSGNVGRPEYKY 219 >UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4IPE5_GEOTN Length = 228 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 134/231 (58%), Gaps = 10/231 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLII+DD +AE+NRR+V ++ G++ G A+ E+A+E+ D++LLD+Y Sbjct: 1 MIRVLIIEDDHRIAEINRRFVEKVEGYEVVGIATNAEEAREL--TEVLRPDVLLLDVYFP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+ L + D+I+I++A + T+K +LH GV DY+IKP +RF E L + Sbjct: 59 DMNGISFLKWVRQRFSNIDIIMITAAREIDTLKQALHGGVFDYIIKPIMFNRFAETLNRY 118 Query: 121 R----QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + + + +++ ++ Q ++D+LI S ++ P LPKG+ P TL + + +D Sbjct: 119 KDYHDKMQQWMKEKEWIGQEDVDELIGRELSAKEQP-SLPKGIQPLTLEKVLVVVKQCRD 177 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP--VYRYR 225 + +E+ ++ +SR + R+YL +LV+ + I YG GRP +YR R Sbjct: 178 -GVTAEEVGQQIGMSRTTARRYLEYLVSTGQVLADIAYGSVGRPERIYRKR 227 >UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacillales RepID=C0Z7K6_BREBN Length = 253 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 133/233 (57%), Gaps = 17/233 (7%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTAST----LEKAKEIIFNSDTPIDLILLDI 57 I VLI++DD MV E+N++++ ++PGF G A+ L+ KE+ TP DL+++DI Sbjct: 8 IRVLIMEDDPMVQEINKQFIERVPGFVVVGIAANGADGLKLVKEL-----TP-DLVIIDI 61 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 +M ++G+ L L A+ DVIV+++A D TI+ L G +DY+IKPFQ R +++L Sbjct: 62 FMPIQDGVKALMELRAAKHAVDVIVVTAAKDKTTIQSMLRNGAMDYIIKPFQFERIKQSL 121 Query: 118 TGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQD----PRR--LPKGLTPQTLRTLCQWI 171 +R+ + ++ Q E+DQL+ S ++ P R LPKGL T+ + + I Sbjct: 122 ENYREFRRRIDWEGTASQDEVDQLLFRKSREKEQADATPAREVLPKGLHAVTMEQIMRQI 181 Query: 172 DAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + + S D++A V I+RV+ R+YL +L + + YG GRP RY Sbjct: 182 E-KESQPLSADDVAERVGIARVTARRYLDYLEKSGSVRMDVSYGGVGRPTNRY 233 >UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q894L8_CLOTE Length = 233 Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 132/236 (55%), Gaps = 12/236 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI V+II+DD MV E+N R++ +I GF+ C AS L++A + I + L+ + + Sbjct: 1 MIKVMIIEDDPMVMEINYRFLNKIEGFKVCKKASNLKEAYDYILKHKLDLILLDIY--LP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +ENGL+ L L D I+I++ ++K++L YG VDY+IKPF +RFEE + Sbjct: 59 RENGLEFLKKLRKDEIGLDAIIITADRSKDSLKEALMYGAVDYIIKPFTFNRFEETFKNY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGS------SSNEQDPRR---LPKGLTPQTLRTLCQWI 171 R K + LE +Q +D+LI + N +PR L KGL T + + I Sbjct: 119 RGKYIKLENLDQLEQNTVDKLISNTRCGDCNKKNTLEPREYTHLIKGLNKFTYEKIWEHI 178 Query: 172 DAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 Q+Y F+ +E+A E+ ++R++ RKYL ++ + L + YG GRP + Y+++ Sbjct: 179 HKRQNY-FTAEEIAKEIGMARITIRKYLEYMCIENKLGFKLEYGKVGRPRHEYKVK 233 >UniRef50_UPI00019732B8 two-component response regulator yufM n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019732B8 Length = 230 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 133/225 (59%), Gaps = 3/225 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M +V+I++DD MVA +NR+YV P F + + A + + S +DLI+LD YM Sbjct: 1 MYSVIIVEDDPMVASINRQYVELEPSFSVKQIFKSGQDA--LSWLSREEVDLIILDYYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G + + LH+ VI+++SA D+A +++ L GV+DYL+KPF+ SRF +AL+ + Sbjct: 59 LMTGQEFIDRLHSMGKAPSVIMVTSAGDSAIVQELLSRGVLDYLVKPFERSRFRQALSRF 118 Query: 121 RQKKMALEKHQYYDQAELDQLI-HGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 Q + L+ +QAE+D+L+ H ++ L KGL+ TL + ++ + F Sbjct: 119 AQTRSCLDGSPELNQAEIDRLLSHAQPASPSCQTELAKGLSETTLTLIRNFLKSRPGELF 178 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S++++A +V++SR++ R+Y+ +++ + +S+ Y GRP +Y Sbjct: 179 SSEQIAEQVHLSRITIRRYMNYMLEIGEIVSSVDYQTGGRPSIKY 223 >UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX8_BACP2 Length = 233 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 ++ VLI +DD +A ++ Y+ QI GFQ G A + + E + +DLILLD+YM Sbjct: 2 VMKVLIAEDDFRIAAIHASYIQQIEGFQVAGKAKSAKDMWEALQQEQ--VDLILLDVYMP 59 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 E G +LLP+L + DV++I++A + ++D+L YGVV YLIKP A +F + LT + Sbjct: 60 DELGTNLLPLLRERYPEVDVMIITAATETTLLRDALQYGVVHYLIKPVTAQKFAQVLTEY 119 Query: 121 RQKKMALEKHQYYDQAELDQLIHG---SSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 ++KK + +Q +D L G E+ R LP G+ TL + I++ D Sbjct: 120 KEKKDMINSKDEVNQTMID-LFFGQMQEEPKEKGDRDLPTGINSLTLDKVKTLIESEND- 177 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S +EL ++ SR + R+Y+ +LV + YG+ GRP +Y Sbjct: 178 GISAEELGEKMGASRTTARRYVEYLVTTGECRAELAYGIIGRPERKY 224 >UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIR5_9FIRM Length = 221 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M V+I++DD M+ ELNRRY + F T S +A + + ++ P DL++LD YM Sbjct: 1 MYTVVIVEDDPMITELNRRYAEKDGRFTVAQTFSQPRRALDWLRHN--PADLVILDFYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + NGL+ L + A +SDVI+I++A DAAT++ GVVDYL+KPF RF AL + Sbjct: 59 QMNGLEFLRAVRAAGVESDVIMITAANDAATVEALTRLGVVDYLVKPFAYERFCRALDAF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 +++ A+ DQ LD L+H P LPKG+ QT + + + ++ Sbjct: 119 CRRRSAMRGS--LDQTALDNLLHAVPPA---PATLPKGMQAQTQERVLACMRDDPGHAYT 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 +E+A +S V+ R+Y+ +L + ++YG GRP YR+ Sbjct: 174 CEEIAAASGLSVVTVRRYMGYLAQQGQVTGDMNYGTGGRPCLVYRL 219 >UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42273 Length = 237 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFN-SDTPIDLILLDIYM 59 M NVLI++DD VAE+ + +V ++ GF G T + + +FN ++T DLILLD+Y+ Sbjct: 5 MYNVLIVEDDFRVAEITKGFVEKVDGFNVIGLCKTGAETESFLFNLNETTPDLILLDVYI 64 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGLDL + + D+++I++A + TI+++L G+ DY++KP +RF+ L Sbjct: 65 PDVNGLDLFWKIRENLHQVDIVMITAAKEVYTIEEALRGGIFDYIVKPVDFNRFKRTLDT 124 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQ----DPRRLPKGLTPQTLRTLCQWIDAHQ 175 ++ ++ +L + +Q E+D L S ++ + +LPKG+ TL + + H Sbjct: 125 FKDQRGSLSSKEKLNQEEIDLLTRAQSPSQSAALVEQEQLPKGIDSITLDKVKNILSLHS 184 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP 220 D + L V ISR + R+YL +LV+ + YG GRP Sbjct: 185 DTGITASSLGEAVGISRSTARRYLEYLVSISEARAELSYGDVGRP 229 >UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPK0_9FIRM Length = 233 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 5/229 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+V+I++DD MV EL+R+Y++++ GF G A E+ II + L ++DIYM Sbjct: 5 ISVVILEDDPMVLELHRQYLSKVKGFNLTGWARDGEEGVNII--AKLQPHLAIVDIYMPG 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GLD+L + +DVI++++A D +++ + YG VDY+IKPF +RF++AL +R Sbjct: 63 ISGLDVLKHIRRQEWNTDVILVTAAHDTDSVQQGIQYGAVDYVIKPFTFTRFKKALETYR 122 Query: 122 QKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L K Q Q ++D ++ + D LPKGL TL + + + Y F+ Sbjct: 123 RYFCKLRTKEQLISQKDID-MLKNNIVGLSDKSMLPKGLQQTTLDLIVELLRQKNGY-FT 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 E+A+ + ISRV+ ++YL +L IL + YG GRP+ ++ + E Sbjct: 181 VKEIASALGISRVTVKRYLNYLQEGGILKGMLSYGPVGRPLQKFLVNKE 229 >UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammaproteobacteria RepID=A4VGG4_PSEU5 Length = 241 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 138/226 (61%), Gaps = 4/226 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLI++DD MV LN Y+A++ G + G +++ A E++ +D +DL+LLD+Y++ Sbjct: 5 LRVLIVEDDPMVMRLNVDYLARLDGIELVGQCASVPAALELL--ADETVDLLLLDVYLRN 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL++L L +D ++I++A++ T++ + GV DYL+KPF RF +A+ R Sbjct: 63 RSGLEVLRYLRAEDRNTDAVLITAASEIETVRAAQRLGVRDYLVKPFSFERFRDAVESCR 122 Query: 122 QKKMALEK-HQYYDQAELDQLI-HGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + AL + + Q ++D+L ++++ + P LPKGLTP +L + Q I A ++ F Sbjct: 123 RARDALSRLPEQLGQGDIDRLFSQPAAADVRRPGDLPKGLTPASLAQVAQAILALEEDSF 182 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +++ L +SRVS RKYL L + +L S HYG GRP +RYR Sbjct: 183 TSENLLTATGMSRVSVRKYLKHLTDAQLLEESFHYGQIGRPSFRYR 228 >UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8G181_DESHD Length = 225 Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 138/233 (59%), Gaps = 18/233 (7%) Query: 2 INVLIIDDDAMVAELNRRYVAQIP-GFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 I VLII+DD MVAE N+ YV QI F+ GT T +A E + ++ P DLILLD+++ Sbjct: 4 IRVLIIEDDPMVAEFNKSYVEQIGHPFKVVGTCFTEAQALETL-KTNMP-DLILLDVFLP 61 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+ LL + + DVI+I++A D+ T++++L YG VD+LIKPF RF++AL + Sbjct: 62 NGNGMHLLKTIRDNNFLLDVILITAAKDSVTVQEALRYGAVDFLIKPFGFKRFKQALLNY 121 Query: 121 RQKKMALEKHQYYDQAELD------QLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAH 174 K ++ Q +QA+LD ++ + +SS LPKG+ TL+ + ++ H Sbjct: 122 VHLKKVIDTEQEINQADLDSRFDFLEIDYTTSS-------LPKGVHLLTLKLITDYLYDH 174 Query: 175 QDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 + + S E+A ++++SR++ KYL LV + S+ Y V GRP Y+++ Sbjct: 175 PNPK-SCHEIAADLSMSRITAWKYLEHLVKQGQVTVSLEYKV-GRPTKLYKLK 225 >UniRef50_C1TQF1 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQF1_9BACT Length = 230 Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 15/229 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD MV ++++R+V IPGF+ G + +++ +DL++LDIYM + Sbjct: 4 IRVLIVEDDPMVMDIHKRFVLSIPGFELVGLGANGMDGLKVL--EQRSVDLVILDIYMPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG-- 119 +GL+ L + R DVIV+S+A + T++D + +G DY++KPF RF+EA+ G Sbjct: 62 LDGLETLHEIRRRRRNVDVIVVSAAHETDTVRDVMRFGAFDYIVKPFTYERFKEAMEGYL 121 Query: 120 --WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 W QK DQ +D+++ + ++D R LPKGL L + + I ++ Sbjct: 122 LYWAQKG-------DLDQGAIDRIMRRGAREKRD-RCLPKGLGSVQLDRV-RSILMEEEG 172 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 S DE+A +SRV+ R+YL +LV+ + + GRPV YR+ Sbjct: 173 ALSADEVAVRAGVSRVTARRYLEYLVSINRAAVEPLHRDVGRPVNLYRL 221 >UniRef50_A3JET4 Response regulator of citrate/malate metabolism n=5 Tax=Gammaproteobacteria RepID=A3JET4_9ALTE Length = 231 Score = 133 bits (334), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 6/228 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +LI +DD +AE+ RR++ ++ + CG A TL A+E DLILLD+Y Sbjct: 4 IRLLIAEDDRQIAEIQRRFIQRLEQVELCGIAHTLADAREQA--EVLKPDLILLDVYFPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGLDLL L + SDVI+I++A + T++ +L GV DY++KP R EEA+ + Sbjct: 62 GNGLDLLRELRASNSSSDVILITAAKEVETLRTALRGGVFDYILKPLAFERLEEAINRFC 121 Query: 122 QKKMALEKHQYYDQAELDQLI-HGSSSNEQDP-RRLPKGLTPQTLRTLCQWIDAHQDYEF 179 L ++ Q E+D L+ S N D RLPKG+ TL + + + + + Sbjct: 122 DHVERLSALKHLGQDEVDALLPRNSGENGNDSHHRLPKGIDVITLDRIREVVADGKPW-- 179 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 S +E+ + SR + R+YL ++ L + YG GRP RYR+Q Sbjct: 180 SAEEVGGAMGASRTTARRYLEYMTGTRTLAAEVTYGSIGRPERRYRMQ 227 >UniRef50_C1I809 Two-component system response regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I809_9CLOT Length = 232 Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 126/227 (55%), Gaps = 6/227 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I V I++DD MV E+N R++ ++ GF G AS++E+AK I + DL+LLDI++ Sbjct: 4 IKVFIVEDDPMVKEINTRFLEKLEGFIVVGDASSIEEAKIKI--TKEKADLVLLDIFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+DLL + + D I+I++ +++ ++ YG +DYLIKPF+ RF+EAL+ +R Sbjct: 62 GKGIDLLKWIRSKEINIDTILITADKCKSSVDEAFKYGAIDYLIKPFKFERFKEALSNYR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSN----EQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 + + L +Q +DQ I ++N E + L KGL+ +T + ++ Sbjct: 122 NRFVELNNIDNINQDYIDQYILNINANFLDEEMQEKELCKGLSLKTYNKIINYMIQKNGQ 181 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + + +E+A ++RV+ R+YL +V + + YG GRP Y Sbjct: 182 DLTAEEIAKGSGLARVTARRYLEKMVEEGKVEINQEYGKIGRPTNYY 228 >UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=Lactobacillales RepID=B3WBQ3_LACCB Length = 229 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 128/233 (54%), Gaps = 5/233 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M N+LI++DD MV ++R Y+ +I F ++ T+ AK+++ + I L+LLDI ++ Sbjct: 1 MTNILIVEDDPMVQFIHRNYLEKIGTFDTIYSSETIADAKKLL--ASRSIQLVLLDIRLK 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+D L L + DVI+I++A + + D+LH GV+DYLIKPF RFE+++ + Sbjct: 59 DGNGIDFLTDLRRTKQTVDVILITAANEVNIVNDALHLGVIDYLIKPFTLERFEKSIQRY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R K AL Q +Q++LD ++ L KGL+ TL+ L Q F+ Sbjct: 119 RTKHQALVTDQ-LNQSQLDTYFEPQTTIPP-TVDLDKGLSKATLQ-LIQGAIKQLPQPFT 175 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 +L E +S VS RKYL +L + H L Y TGRP Y++ ++L Sbjct: 176 VAQLTTETGLSHVSVRKYLSFLEDHHFLKGDTIYRKTGRPYKTYQMVTAPHAL 228 >UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillus thuringiensis RepID=C3DC45_BACTU Length = 231 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 10/233 (4%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA +N++++ + G + + + + II N + P DLILLD+Y+ E G+D L + Sbjct: 1 MVAMINQQFIGRFKGLRIIASVGNIGELWNII-NKNVP-DLILLDVYLPGETGIDFLQTV 58 Query: 72 HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQ 131 + +I+I++A D TIK SL YGV+D+LIKPF RFE A+ + Q K + Sbjct: 59 RQKQLSIPIIMITAAHDIPTIKKSLEYGVIDFLIKPFSYERFELAIENFLQYHSLTTKLE 118 Query: 132 YYDQAELDQ-LIHGSSSNEQDP------RRLPKGLTPQTLRTLCQWIDAHQDYEFSTDEL 184 DQ LDQ LI + +P ++ KGL+ TL+ + I + Y FST+++ Sbjct: 119 ETDQDTLDQILIKERVPSLVNPACKELSSKISKGLSKITLKKILHVIVKQEGY-FSTEDI 177 Query: 185 ANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 +V++SRVS +KYL++L L + Y GRP+ + + E L+ + Sbjct: 178 TKKVDLSRVSTKKYLLFLNEIGYLSEELKYLAVGRPITVFHVVPEKEHLITSF 230 >UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACD4_CARHZ Length = 220 Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 124/225 (55%), Gaps = 9/225 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEII-FNSDTPIDLILLDIYM 59 MI +I++DD MV E+N+ ++ ++ GF+ + L+ E++ F + +L++LDIY+ Sbjct: 1 MIKTVIVEDDPMVLEINKNFIKEVEGFEII---AALKSGSELLNFLKNHSPELLILDIYL 57 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL LL + DV+ I++A + + L YGVVDY+IKPF+ R +AL Sbjct: 58 PDIDGLTLLKEIRRQNISVDVLAITAAQQGEIVAELLRYGVVDYIIKPFKKERLVKALLT 117 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++ K + + + + Q ++D+L SS+ + LPKGL TL+ + ++ ++ Sbjct: 118 YKNKYLKIGRKRSVQQEDIDRLFARSSAGGE----LPKGLNDITLKKILSLLEETRE-PL 172 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + E+A ISRV+ R+YL +L + I YG GRPV Y Sbjct: 173 AAAEVAKRAGISRVTARRYLEYLEREGLAGKEIRYGSIGRPVNYY 217 >UniRef50_C1SJK3 Response regulator of citrate/malate metabolism n=5 Tax=Bacteria RepID=C1SJK3_9BACT Length = 228 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 129/232 (55%), Gaps = 9/232 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPI---DLILLDI 57 MI VLI++DD +A L+RR+ ++ GF G A+ L A E+ T I +L+LLD+ Sbjct: 1 MIKVLIVEDDVNIANLHRRFTEKVEGFDVVGIANGLADAFEM-----TEILKPELVLLDM 55 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 Y + +G+D L + ++ +D+I+I++A D + +++++ G DY++KP RF ++L Sbjct: 56 YFPEGSGMDFLWKIRSSGILTDIILITAARDVSVLQEAVRGGAFDYIVKPVVFERFNKSL 115 Query: 118 TGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 ++ + + +Q ++D L+ S + + +PKG+ P TL+ + + + Sbjct: 116 NRFKDYLKEIRCEKTLEQNDIDSLLDRHSEAVINTQNMPKGIDPITLKKIISVFEKKHE- 174 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 S+DE+ + SR + R+YL +L IL I YG GRP R+++ ++ Sbjct: 175 AMSSDEVGRYIGASRNTARRYLEYLTGAGILTVDIDYGTVGRPEKRFKLVSD 226 >UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococcus casseliflavus RepID=C9AYP4_ENTCA Length = 227 Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 130/223 (58%), Gaps = 8/223 (3%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 N+LI++DD MV ++R Y+ ++ F+ + T+E+A+E++ I+L+LLDI+++ Sbjct: 4 NILIVEDDPMVQFIHRSYLERLAVFERIFSVETVEEAQEML--QKETIELLLLDIHLKDG 61 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 NGL+LL L + DVI+I++A + I SLH G++DYLIKPF RF +++ ++Q Sbjct: 62 NGLELLQTLREQQQAVDVIMITAADETRLISQSLHLGMLDYLIKPFSFERFAQSIQVFQQ 121 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDP-RRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ +L KH Q ++D L+ G N++ P L KGLT TL+ + + I + F+ Sbjct: 122 RRESL-KHPRIAQQQIDLLLQG---NQKSPWIELEKGLTEDTLQLIQETIRTIKQ-PFTV 176 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 ELA +S VS RKY+ L + + Y GRP +Y Sbjct: 177 QELAQACALSHVSVRKYVAHLEKTKAIRSENVYTKIGRPYKQY 219 >UniRef50_A4SN90 Two-component system citrate/malate response regulator, CitB n=2 Tax=Aeromonas RepID=A4SN90_AERS4 Length = 223 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 9/225 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI +LI++DD +AE++RR+V ++ GF+ G TL A+E I DL+LLD+++ Sbjct: 1 MIKILIVEDDPAIAEIHRRFVQRLAGFEVLGVTLTLFDAREQI--GILKPDLVLLDVWLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G LL L A DVI++++A +AA +++++ GVVD+++KP R + L + Sbjct: 59 DGEGFALLRELRQAGACLDVILLTAAREAAALQEAMRLGVVDFILKPVVFERLRDTLDNY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q + AL DQ +D L G+ + LPKG+ TL+ + + A S Sbjct: 119 CQSRAALAD---IDQQAVDALF-GTPLQQVAAGGLPKGIDALTLQRV---LAALTGVGAS 171 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +E+ N V +SR + R+YL +LV + + YG GRP RY+ Sbjct: 172 AEEIGNRVGVSRTTARRYLEFLVGQQLASPELEYGTVGRPERRYQ 216 >UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=Vibrionaceae RepID=A7JZZ2_VIBSE Length = 228 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 123/217 (56%), Gaps = 4/217 (1%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 V+II+DD +AEL+ +Y++Q+ G + G A+T +A E+ + P DL+L+D+Y+ Sbjct: 7 VMIIEDDLAIAELHHKYLSQLAGLEVVGIATTRMEA-EMQLDILKP-DLLLMDVYLPDGT 64 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 GL++L L DVI+I++A D T++ ++ GVVDYL+KP R + AL + + Sbjct: 65 GLEILNTLRANNQTCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLDAALKKYVSQ 124 Query: 124 KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 + L+ + DQ +D+++ ++ + P RLPKG+ TL + + + DE Sbjct: 125 RQQLDIAESLDQNLVDKMLQSHANQDNLPNRLPKGIDGVTLDKIRELF--PNGSVLTADE 182 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP 220 ++ SR + R+YL +L++ L ++YG GRP Sbjct: 183 AGEKIGASRTTARRYLEYLISTGELEADLNYGSVGRP 219 >UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7M1_9BACT Length = 228 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+VLI++DD MVA ++R+++ + GF G S+ + A E F P+ L++LD+++ Sbjct: 5 IDVLIVEDDPMVAAIHRQFIGAVSGFIVAGVVSSGKDALE--FLQRHPVRLVILDVFLPG 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ L + VIV+S++ D TI L G DY+IKPF R + +L ++ Sbjct: 63 MDGVATLQKIREMNRTVGVIVVSASRDTNTINAVLKAGAFDYVIKPFVFERIQTSLRSFQ 122 Query: 122 QKKMALEKH-QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q + L + DQ ELD+L+ E LPKGL PQTL+ + + H S Sbjct: 123 QLENRLNRGADQIDQKELDRLLQ-VQQKETSTNDLPKGLNPQTLQQVKNLL-GHAASPLS 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 + E A + ISR++ R+YL +LV + Y GRP RY ++ Sbjct: 181 SVETAQALKISRITARRYLEYLVAAGEATLELEYQKVGRPTNRYALR 227 >UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYA0_9BACL Length = 226 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 132/226 (58%), Gaps = 9/226 (3%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 VLII+DD MVA +++ Y + +++E A+E + N+D +DLI+LD Y+ Sbjct: 3 VLIIEDDPMVAMIHKEYFKKKELTDDLNHVTSIEDAREYLANND--VDLIVLDNYLIDGQ 60 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 G++ LP L +I+I++A D T++ +L GVVDYL+KPF RF +A+ + Sbjct: 61 GIEYLPELKGYP----IIMITAANDVQTVEAALSNGVVDYLVKPFTYERFAQAIDKVQDY 116 Query: 124 KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 L K + +Q +D+ ++ S E+D LPKGL+ TL+ + + I H F+T + Sbjct: 117 VKLLSKEKI-NQDLIDEYLN-SGRIEEDEDNLPKGLSRITLKKVLEAIKQHNS-GFTTQQ 173 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 +A++++ISR++ RKYL LVN +IL Y +GRPV + + +E Sbjct: 174 IADKLDISRITIRKYLNHLVNINILSEDAEYYTSGRPVSVFTVVSE 219 >UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax=Streptomyces RepID=B4VFP7_9ACTO Length = 238 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 121/212 (57%), Gaps = 4/212 (1%) Query: 13 VAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVLH 72 VA +N YV ++PGF+ A + +A E++ SD P+DLILLD Y+ ENGLDL+ L Sbjct: 3 VARINAAYVEKVPGFEVAARAHSAAEALELL--SDRPVDLILLDHYLPDENGLDLVRHLR 60 Query: 73 NARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQY 132 +DVI++++A D AT++ ++ G + YL+KPF L + + +LE Sbjct: 61 RRGDLTDVIMVTAARDLATVQAAMRLGALQYLVKPFTFGALRSRLEAYGSLRHSLESGGE 120 Query: 133 YDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISR 192 +QAE+D+ I G+ ++ P LPKG +P T + Q + + D ST ++A+ ISR Sbjct: 121 AEQAEVDR-IFGTLASAGTPNALPKGHSPTTAELVRQVLRS-ADGPLSTQQIADLAGISR 178 Query: 193 VSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + ++YL L + ++ YG TGRP +RY Sbjct: 179 QTAQRYLKLLDRTGRVTLALRYGETGRPEHRY 210 >UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q1B0_9ACTO Length = 226 Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 129/226 (57%), Gaps = 11/226 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 ++ VL+++DD + AE +R YV ++PGF C G A T +A +++ S IDL+LLD+ + Sbjct: 4 LLRVLVVEDDPVAAEAHRTYVDRLPGFTCVGIAGTAARALQVL--SHGQIDLVLLDMNLP 61 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GLD++ + A ++DV+ ++SA + + ++ + GVV Y++KPF + L+ + Sbjct: 62 DGHGLDVVRRMRAAGNQTDVVAVTSAREVSAVQAAARIGVVQYVLKPFAFETLRDRLSAY 121 Query: 121 RQKKMALEKHQYY-DQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +++ A E Q DQ E+D+L+H ++ + +PKGL L + Q + + + Sbjct: 122 ARQRRAAESGQVVADQDEVDRLLHPATVSS-----VPKGLAGSVLDRVVQLLGNREGW-- 174 Query: 180 STDELANEVNISRVSCRKYLIWLVN-CHILFTSIHYGVTGRPVYRY 224 + +E+A + SR++ R+YL L + L T + G +GRP Y Sbjct: 175 TAEEVATSLGTSRITARRYLEHLADQGQALRTQRYDGRSGRPKVEY 220 >UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=A6W416_KINRD Length = 238 Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 12/231 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL++DDDA VA ++R YV +P F CG A + T DL+LLDI++ Sbjct: 10 VRVLVVDDDATVALVHRGYVETLPRFTVCGVVH--RGADVLPAVRATAADLVLLDIHLPD 67 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 E+GLD+L L DV+ I++A D T++D++ GV YL+KPF + F E + + Sbjct: 68 ESGLDVLRRLRAHGVDVDVVAITAARDVDTVRDAMAGGVWHYLVKPFSLATFAERMEAYA 127 Query: 122 QKKMALEKHQYYD---QAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWI----DAH 174 Q ++ + D Q E+D+L+ +S + LPKGL+P+TL + + Sbjct: 128 QHRLEFARRDGSDALGQEEVDRLL---TSRRRSASALPKGLSPRTLDVVVDHLRAGAGGD 184 Query: 175 QDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + S ELA I+RVS R+YL L + YG GRP YR Sbjct: 185 GTGDVSAAELAARCGIARVSVRRYLEHLERAGLAEVRPRYGRAGRPENGYR 235 >UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WFB7_FUSMR Length = 220 Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLI++DD MVA +N Y++ + G T + + F + +DLI+LD+++ Sbjct: 1 MKNVLIVEDDPMVAMINEEYLSSFQNIKVLG--RTFTEKDTLDFLTTHKVDLIILDVFLG 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +ENG+++L + +DVI+I+SA IK + +G +DYLIKPF R + ++ Sbjct: 59 EENGIEILKKIRTLGYTTDVIMITSANGGEDIKKAFSFGCIDYLIKPFDFERLKISIDKI 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L K + Q +D IH + S+ LPKGL +TL + Q I + EF Sbjct: 119 FTRDEILNKSK-VKQDSIDN-IHSTPSS----LNLPKGLNSKTLEKVTQIISNLPNEEFG 172 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 ++ +IS V+ +KYL +L N + + +YG GRP+Y Y+ Sbjct: 173 IKDICQITDISNVTIKKYLDYLENIKYITSFTNYGNIGRPLYLYK 217 >UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacillales RepID=C0ZHY7_BREBN Length = 231 Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 128/232 (55%), Gaps = 14/232 (6%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAK---EIIFNSDTPIDLILLDI 57 MI VLII+DD +AE+NRR+V ++ G++ G A+ ++AK EI+ P DL+LLDI Sbjct: 1 MIRVLIIEDDLRIAEVNRRFVEKVEGYEVIGIATNGQEAKDQMEIL----QP-DLVLLDI 55 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 Y +GLD L ++ +DVI++++A + + +++ YGV D++ KP +R ++ L Sbjct: 56 YFPDMDGLDFLSIIKEQFPTTDVIMLTAAKEVDAVVEAIRYGVFDFITKPLIFARLQQTL 115 Query: 118 TGW---RQKKMALEKH-QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDA 173 + RQK +K Q ++D+LI + + + KG+ TL + ++ Sbjct: 116 RNYQEFRQKVSDWKKDTDQISQTQIDELIARTGQKKTPETKAVKGIDQITLDKISGFL-- 173 Query: 174 HQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 Q E +TD ++ E ISR + R+YL +LV + YGV GRP Y+ Sbjct: 174 MQTQEATTDLVSKETGISRSTARRYLEYLVAKGDAIADLSYGVVGRPERVYK 225 >UniRef50_C1TQ18 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ18_9BACT Length = 227 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+VL+++DD MVA++++ YV + GF+ G KA + F P+ L++LDI++ Sbjct: 4 IDVLVVEDDPMVADIHQNYVNSVDGFRVVGMVDNGLKALD--FLRKRPVRLVILDIFLPG 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL L + + DVI+IS++ D AT+ +L G DY++KPF R + AL +R Sbjct: 62 LDGLGALERIRESGSNVDVIIISASRDKATVNKTLQAGAFDYIVKPFAFDRMKAALQAFR 121 Query: 122 QKKMAL-EKHQYYDQAELDQLIHGSSSNEQDPRR-LPKGLTPQTLRTLCQWIDAHQDYEF 179 Q L E DQ ++D L+ + N+++ + LPKGL P L + + D Sbjct: 122 QVVHRLTEGPNQVDQQDIDNLLL--ARNKKNIQTVLPKGLNPNVLEKVEALL-TKVDKPL 178 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 S+ E A + +SR++ R+YL +LV Y GRP+ +Y + Sbjct: 179 SSVETAEAIGVSRITARRYLEYLVASDKAVMEREYQEVGRPINKYEL 225 >UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepID=C2JJ49_ENTFA Length = 230 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 136/232 (58%), Gaps = 12/232 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +N+LII+DD MVA ++++Y+ ++ T +T+ A+ ++ + L+LLD++++ Sbjct: 1 MNLLIIEDDPMVAYIHQKYLEKLIHQPTIFTVATI--AEGLLLTKEKQPALVLLDVHLKD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGL L + + + ++VI+I++A + +K SLH GV+DYL+KPF RF++++ ++ Sbjct: 59 GNGLTYLATIRDEKIDTEVILITAANELENVKRSLHLGVLDYLVKPFSFERFQQSIENYQ 118 Query: 122 QK--KMALEKHQYYDQAELDQLIHGSSSNEQDPRR------LPKGLTPQTLRTLCQWIDA 173 +K + LE + Q ++DQL H S +N + + L KGLT TL+ L + ID Sbjct: 119 KKTAQFTLETKE-LSQTKVDQLFHYSQTNARKNEQALQNMSLEKGLTQATLQLLLKKIDE 177 Query: 174 HQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 DY F+ EL+ +S VS RKY+++L ++L + Y GRP YR Sbjct: 178 FTDY-FTIQELSEASQLSHVSVRKYVLFLEKNNLLESKNSYLKVGRPYQSYR 228 >UniRef50_C1SFW1 Response regulator of citrate/malate metabolism n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFW1_9BACT Length = 231 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 2/229 (0%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +I VLII+D+ + +L+R ++ ++ GF+ G A +L++A+E I + DLILLD++ Sbjct: 3 LIQVLIIEDNERILKLHRLFLEKVDGFELVGIAKSLKEAEETI--AVLQPDLILLDLFFP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+ L + DVI+I++ D +++D+L G DY++KP RF+E+L + Sbjct: 61 DGHGMSFLKHMRMQDINFDVILITADKDVNSLQDALRNGAFDYIVKPVVFDRFKESLEKY 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + K + Q +Q + D + + E +PKG+ P TL+ + + + + Sbjct: 121 KTFKTGISAKQTIEQKDADSIFMSAQQVEYTDDDVPKGIDPLTLKKVKDTLVEYGERGIC 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 E + SR++ R+YL +LV+ + I YG GRP +Y + E Sbjct: 181 AQETGKLIGASRITARRYLEYLVSGGFISADITYGSVGRPERKYFYKPE 229 >UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65LB3_BACLD Length = 238 Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 129/228 (56%), Gaps = 6/228 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + V I++DD A+++++ +++I GF G A + AK+++ D DL+LLDI++ Sbjct: 4 LQVFIVEDDIRNADIHQKLISKIDGFSVIGIAENFQDAKDLL--PDVKPDLVLLDIFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G++LL ++ +DV++I++A + ++ ++ G VDYLIKP SR +E L +R Sbjct: 62 GSGMELLWLIRQTLRHTDVMMITAAKEVEYVEQAIRAGAVDYLIKPIMFSRLKETLLNYR 121 Query: 122 QKKMALEKHQYYDQAELDQLI--HGSSSNEQDPRR-LPKGLTPQTLRTLCQWIDAHQDYE 178 ++ + + DQ ++D L+ S + EQ + PKG+ TL+ + ++ ++ + Sbjct: 122 SYRLKVNEMSSIDQTDVDSLMAKRRSITKEQIAKADYPKGIDGLTLKKVAGVLNKSENSD 181 Query: 179 FSTDE-LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 T E L + +SR + R+YL +L + T ++YG GRP RY+ Sbjct: 182 GITAESLGRTIGVSRTTARRYLEFLAAEKHVKTELYYGTVGRPERRYK 229 >UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XBI6_NAKMY Length = 228 Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 123/229 (53%), Gaps = 13/229 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTAST----LEKAKEIIFNSDTPIDLILLDI 57 VL++DDD MVA ++ R++ GF+ G AST L K E+ +P DL+LLD+ Sbjct: 8 FGVLVVDDDFMVARIHCRFLQTQNGFRVDGVASTGIDALAKLAEL-----SP-DLMLLDV 61 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 ++ +GL++L + + DVIV+++ D ++++ G + YL+KPF+ + E L Sbjct: 62 HLPDMSGLEVLRIARQEHPRVDVIVVTAERDLDAVREAWQGGAMSYLVKPFEYTALAEKL 121 Query: 118 TGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 +R+ + L+ + DQ +DQL S + LPKGL+ +T + + + A D Sbjct: 122 AHFRKARALLDTAE-VDQGAIDQLFGVGGSTTRPRADLPKGLSRETADLVRRSLSA--DE 178 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 S E A V ISRVS R+YL +L + + YG TGRP YR+ Sbjct: 179 ALSATECAERVGISRVSARRYLEYLEQTGVAQVRLKYGKTGRPERLYRL 227 >UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella RepID=A6WJS0_SHEB8 Length = 226 Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 124/220 (56%), Gaps = 2/220 (0%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M V+I++D+ VA L +Y+ ++ G AS + A+ ++ + TP DL+LLD+Y+ Sbjct: 1 MHTVIIVEDEVEVAHLVAQYLFSTNRYKVIGMASDISTARSLL-GAITP-DLLLLDVYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NGL+LL L + +S+V+++++A + ++ ++ GV D+L+KP SR ++AL+ + Sbjct: 59 DGNGLNLLAELRSQGIRSEVVLLTAAKEVQILEKAMQLGVFDFLVKPVLLSRLDQALSRF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 +++ L + Q+ +D + + + RLPKG+ TL+ + + DA + + Sbjct: 119 ESRQLKLSATEELTQSVVDAFMEVPTGTTKAAARLPKGVDQLTLQKIREVFDAKPQDKLT 178 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP 220 + ++ +SR + R+YL +L+ C+ L YG GRP Sbjct: 179 AQMVGEKLGVSRSTARRYLEFLLECNELAADQSYGSIGRP 218 >UniRef50_Q03TV3 Response regulator of citrate/malate metabolism n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03TV3_LACBA Length = 238 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 130/239 (54%), Gaps = 4/239 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +LII+DD MV +N R++ +IP Q + LILLD+Y+ + Sbjct: 1 MKILIIEDDPMVRLINHRFLERIPQLQAATIVECPSAVAALARPDLAEYTLILLDMYLPQ 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G + L L + VI++++A D T+K++++YGV+D+LIKPF RF++A+ + Sbjct: 61 LSGTEFLAELLGRQLHPQVIMMTAANDQQTLKEAVNYGVLDFLIKPFTFDRFQQAMAKF- 119 Query: 122 QKKMALEKHQYYDQAELDQLIHGSS--SNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + +A++ Q +LD L G++ + LPKGLT +L+ + + A F Sbjct: 120 TRLLAVDDKHTVSQTDLDSLFLGATVPVSTTTTAELPKGLTKLSLQRIVTAL-ATLKPGF 178 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 S ++A++ +SRVS +KY+ +LV L ++I Y +GRP+ +++ L++ Y Sbjct: 179 SNQDVADQTGLSRVSTKKYVDFLVAMGYLTSAIVYQSSGRPLTTFQVVPTSERLIQPYL 237 >UniRef50_B7VN90 Response regulator of citrate/malate metabolism n=53 Tax=Gammaproteobacteria RepID=B7VN90_VIBSL Length = 231 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 9/221 (4%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDT-PIDLILLDIYMQKE 62 V++I+DD +AEL+ RY+ Q+ GF G A+T E + D DL+LLD+Y+ Sbjct: 7 VMVIEDDIAIAELHHRYLEQMGGFDVVGIATT---QSEALMQLDILKPDLVLLDVYLPDG 63 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 GLD+L + + DVI+I++A D T++ ++ GVVDYL+KP R E AL ++ Sbjct: 64 CGLDILNHVRGSNQGCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLEAALKKYQS 123 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRR---LPKGLTPQTLRTLCQWIDAHQDYEF 179 ++ E +Q +D+++ ++ + D R+ LPKG+ TL + + Sbjct: 124 QQQEFESVSDLNQGLVDKMLQANA--KADSRKVSTLPKGIDGVTLDKIRAIFQQADIADI 181 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP 220 + DE + SR + R+YL +L+ L ++YG GRP Sbjct: 182 TADEAGERIGASRTTARRYLEFLITTGELVADLNYGSVGRP 222 >UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacillales RepID=B9DS01_STRU0 Length = 227 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 126/233 (54%), Gaps = 13/233 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +NVLII+DD MV ++R Y+ +I FQ ++ ++ AKE + I LILLDI+++ Sbjct: 1 MNVLIIEDDPMVDFIHRNYLEKINHFQNILSSDSISDAKEKLVQ--FSIQLILLDIHIKD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGL+LL + +VI+IS+A D IK H+G++DYLIKPF RFEE++ + Sbjct: 59 GNGLNLLEYIRANHINCEVIIISAANDGNIIKTGFHFGIIDYLIKPFTFDRFEESIRRFF 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRR-----LPKGLTPQTLRTLCQWIDAHQD 176 + L + Q+ +D L S+++Q L KGL+ T + + IDA Q Sbjct: 119 DHQKQLNQ-MVIKQSAIDFLKSQQSNDKQAITNKTNLLLEKGLSQDTYQLI---IDAIQR 174 Query: 177 YE--FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 F+ +L E +S VS RKY+ ++ + L + Y GRP Y+IQ Sbjct: 175 LSKPFTIQDLTEETCLSHVSVRKYIAYMEENNQLVSEQIYTKVGRPYKVYQIQ 227 >UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XCK5_NAKMY Length = 231 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL+++D+ + A ++ YV +I GF+ A++ +A+ + IDL+LLD+++ Sbjct: 1 MIRVLVVEDEPIAARAHKAYVERIGGFEVAAVANSRIEAERALAKGG--IDLVLLDLHLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NGLDL + A DV+V+SSA DA ++ ++ G V YL+KPF + + LT + Sbjct: 59 DGNGLDLFRRIRAAGSTVDVMVVSSARDADVVRSAVAQGAVQYLLKPFAFNALRDRLTSY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R+ + + DQA + + + + LPKG+T +TL + + D S Sbjct: 119 REFAEQVAGAEDVDQASVVRAL--GMLRAPNTGSLPKGMTKETLAIVVGALRELGDA--S 174 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 ++ + + +SR++ R+YL L + ++ ++ YG GRP RY ++ Sbjct: 175 ATQIGDFLGVSRITARRYLEHLADTNVAERTLKYGQVGRPETRYGLR 221 >UniRef50_C3JVF9 Response regulator receiver domain protein n=12 Tax=Actinomycetales RepID=C3JVF9_RHOER Length = 229 Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 10/231 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCG---TASTLEKAKEIIFNSDTPIDLILLDI 57 MI VLI+DD+ ++A+ +R YV ++P F G + + +A +D PIDL+LLDI Sbjct: 1 MIRVLIVDDEPLIAQAHRSYVERVPEFVVHGVVHSGNAAVRAVTAANATDQPIDLVLLDI 60 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 + +GLD+ L R D+I ++SA D ++ ++ G+V YL+KPF + F + L Sbjct: 61 GLPDASGLDVASALGGLRPSPDIIAVTSARDLEVVRSAVARGIVLYLLKPFTFAAFRDKL 120 Query: 118 TGWRQKKMALEKHQ-YYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + + + AL + Q ++D+ + +++ D PKG QTL + + +D Sbjct: 121 ERYLEYRAALPAGESAVSQHDIDRAMSALRTSD-DRAAAPKGFASQTLGLVAASV---RD 176 Query: 177 YE--FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 E + E+A V +SRV+ +YL L + +L YG GRP RYR Sbjct: 177 SEGPVTAAEVAASVGVSRVTAWRYLEKLADDGMLTRETEYGRAGRPQVRYR 227 >UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacillales RepID=C0ZEJ9_BREBN Length = 239 Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 3/225 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLI++DD + ++N+R+V++I GF+ TA+ AKE++ S T L+LLD+Y+ Sbjct: 4 LEVLIVEDDMRIIDINKRFVSKIEGFEVIATATNGTDAKELL--SCTRPQLVLLDVYLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G +L+ + + DVI+I++A + ++++L GV DY++KP RF E L +R Sbjct: 62 MLGTELVWHIRQHYREVDVIMITAAKEMEMVQEALRGGVYDYIVKPLVFERFRERLESYR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRL-PKGLTPQTLRTLCQWIDAHQDYEFS 180 + + + DQ +DQ++ ++ L PKG+ TL + + I D S Sbjct: 122 KHVIRTREAVEVDQEVIDQMLTRRLVAPKNRDVLAPKGIDLLTLEKVIEAIRQTGDKGVS 181 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +E+ E+ SR + R+YL +LV + YG GRP +YR Sbjct: 182 AEEIGREIGTSRTTARRYLEYLVLEKKARADLIYGTVGRPERKYR 226 >UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinococcus RepID=Q1J047_DEIGD Length = 233 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 11/234 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL+++DD VA +NR + + P G+A+TL +A + + + P DLILLD+++ Sbjct: 4 VRVLLVEDDLRVARVNRDLLERDPDVHVVGSAATLAQA-DALLQALAP-DLILLDVHLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+LL +DV +I++A D A+++ +L G DYLIKPF +R E + R Sbjct: 62 GSGLNLLRHWRAQGRTTDVALITAADDEASVRTALAQGAFDYLIKPFTGARLAEVVARHR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 +++ DQ+ LD+L+ G S +P LP+G+ P TL + Q ++ S Sbjct: 122 ARRV---PRGTLDQSHLDRLL-GVSGGIPEP--LPRGIDPHTLERVAQVLEG-AGGALSA 174 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY--RIQAEHYSL 233 +E+ + ++SRV+ +YL LV YG+ GRP Y R+Q + + Sbjct: 175 EEVGDRAHLSRVTAWRYLEHLVRVGRASLDHQYGLAGRPAKLYCARVQDASHGM 228 >UniRef50_C7MRE3 Response regulator of citrate/malate metabolism n=2 Tax=Actinomycetales RepID=C7MRE3_SACVD Length = 227 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 115/232 (49%), Gaps = 17/232 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL++DDD MVA+++ YV + PGF G A + A + D DLILLDIY+ Sbjct: 1 MIRVLVVDDDFMVAKVHSGYVNRTPGFTVIGAAHSGTAA--LRMARDERPDLILLDIYLP 58 Query: 61 KENGLDLLPVLHN--ARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL- 117 +GL +L L A DV+VI++A D TI+ SLH G + YLIKPF + + L Sbjct: 59 DIDGLTVLRELRADPATVDIDVVVITAARDVDTIRGSLHGGALHYLIKPFSYAVLRDQLD 118 Query: 118 --TGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRR---LPKGLTPQTLRTLCQWID 172 + +K L Q E+D + G PRR LPKGLT QT + + Sbjct: 119 HVSSLHRKLERLSARPAAAQHEVDDVFSGR------PRRTASLPKGLTEQTAALVRTALT 172 Query: 173 AHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 H + S E A+ +SR S R+YL + YG TGRP RY Sbjct: 173 EHPE-GLSATECAHVTRLSRPSTRRYLEHFAETGQAEVRLRYGGTGRPERRY 223 >UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNG4_9FIRM Length = 226 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD MVAE+N+++ + GF G + A + F + +DLI+LD Y+ + Sbjct: 4 IRVLIVEDDPMVAEINKKFTEAVTGFTVVGVVK--DGAAALAFVAQKSVDLIILDNYLPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 + G+++L L DVI++++A D+ T+ L GVV Y+ KPF+ R+ L +R Sbjct: 62 KTGVEVLAELRRRDQPVDVIMVTAADDSKTVSRILRQGVVGYIAKPFKFERYRAVLEAYR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + K Q ++D++ P +PK + QT+ + ++ A+Q S Sbjct: 122 SFREKTLKKTNLAQEDIDEMF-SVRQRSAGPDDIPKNFSQQTMNLIIDFL-ANQTAPLSA 179 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 +E+A V ISRV+ R+YL + V+ + ++ Y GRPV+R+++ Sbjct: 180 EEIAAGVGISRVTARRYLEYFVDLGRVQRTMEYLTVGRPVHRFKL 224 >UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=Bacillus RepID=CITT_BACSU Length = 226 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEII-FNSDTPIDLILLDIYM 59 MI++ I +DD VA+++ R + Q+ GF+ G A+ AKE + + DL+LLDIYM Sbjct: 1 MIHIAIAEDDFRVAQIHERLIKQLDGFKIIGKAAN---AKETLALLKEHKADLLLLDIYM 57 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 E G L+P + + + D+++I++A + ++++L G+ YLIKP A +F + L Sbjct: 58 PDELGTALIPDIRSRFPEVDIMIITAATETRHLQEALRAGIAHYLIKPVTADKFRQVLLQ 117 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +++K+ L Q+ +D + LP G+ TLR + + + + Sbjct: 118 YKEKRKLLMSQPEVSQSMIDHIFGNGVKTALPAEDLPTGINSITLRKIKEALQTASE-GL 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 + +EL ++ SR + R+Y +LV+ + YG+ GRP +Y + A+ Sbjct: 177 TAEELGEKMGASRTTARRYAEYLVSKEEARAELEYGIIGRPERKYYLAAD 226 >UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax=Enterobacteriaceae RepID=DPIA_ECO57 Length = 226 Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +LI++D+ +AE++ Y+ IPGF A L +A+ +I LILLD Y+ Sbjct: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKP--GLILLDNYLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G++LL L A DV+ ++A+D T+ +++ GV DYLIKP R + LT +R Sbjct: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPR-RLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q+K LE Q ++D++ + + E P+ LP G+ P TL + + + + Sbjct: 123 QRKHMLESIDSASQKQIDEMFNAYARGE--PKDELPTGIDPLTLNAVRKLFK-EPGVQHT 179 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP 220 + +A + ISR + R+YL + + H++ I +G GRP Sbjct: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 >UniRef50_A4FKM5 Two-component system response regulator n=31 Tax=Actinobacteria (class) RepID=A4FKM5_SACEN Length = 231 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 14/234 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL++DDD MVA+++ YV+++ GF+ GTA T A + + +L+LLDIY+ Sbjct: 1 MIKVLVVDDDFMVAKIHSGYVSRVTGFEVVGTAHTGADALRAV--GELRPELVLLDIYLP 58 Query: 61 KENGLDLLPVLHNARCK----SDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 +GL +L L + DVIVI++A D T++ ++ G + YLIKPF + Sbjct: 59 DMDGLAVLRELRAGTARPSADPDVIVITAARDLDTVRGAIRGGALHYLIKPFSYEALRDQ 118 Query: 117 LTGWR---QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWI-- 171 L +R + A+ Q ++D+L + P PKG++ +T R + + Sbjct: 119 LENFRSLHRSLSAMPGDAPAAQQDVDRLFGSRARGSSAP---PKGVSSETARIVEDILRE 175 Query: 172 DAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + + + S E A+ +SRVS RKYL V + YG TGRP RYR Sbjct: 176 RSAEGGDLSATECADATALSRVSARKYLEHFVMTGRAEVRLRYGGTGRPERRYR 229 >UniRef50_A6W5B7 Two component transcriptional regulator, Fis family n=3 Tax=Actinomycetales RepID=A6W5B7_KINRD Length = 231 Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 17/233 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNS-----DTPIDLILL 55 MI VL+++DD ++A + VA +PGF+ + + +E + DTPIDL+LL Sbjct: 1 MIRVLVVEDDPLLAAGHAEKVAAVPGFEVV---AAVHSGREALAAVGAAGADTPIDLVLL 57 Query: 56 DIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEE 115 D+ + +GL +L L A +DVI +++A + AT++ +L GVV YL+KPF A+ EE Sbjct: 58 DMTLPDVDGLQVLRALRAAAVPADVIAVTAAREPATVRQALSMGVVQYLLKPFSAAALEE 117 Query: 116 ALTGW---RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWI- 171 L + R A DQ +D+ + S P R G+ TL+ + + Sbjct: 118 RLRAYARFRADVAAASGEHGIDQQAIDEAL--SQLRTAAPGR---GVAAPTLQAVVAALR 172 Query: 172 DAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 A S E+A +SRVS R+YL L + YG +GRP Y Sbjct: 173 TAPSSQGLSAAEVAAATGLSRVSARRYLEHLSAAGRVRREPRYGGSGRPELAY 225 >UniRef50_C5CAK7 Response regulator of citrate/malate metabolism n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAK7_MICLC Length = 238 Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEII---FNSDT--PIDLILLDI 57 VL+++D+ + AE ++ ++PGF+ A +L A+++ ++D P D++LLD+ Sbjct: 7 RVLVVEDEQLTAEAYVAHLDRLPGFEVSAVAGSLLAARQVAAAGLHTDGRFPFDVVLLDM 66 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 + +GLD L L A V+ +++A D ++ ++ YGV YL+KPF F + L Sbjct: 67 NLPDGHGLDFLHQLRAAGFHGGVLALTAATDLPVVRRAVAYGVTQYLVKPFGFDEFADRL 126 Query: 118 TGWRQKKMALEKHQYYD-QAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 G+R L + Q ++D + S E+ LPKGLT TLR + + A + Sbjct: 127 GGFRAASAMLAGDGALEGQEQVDAVFR--VSRERRAEALPKGLTEGTLREVMDLLGADPE 184 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 S E+ + ISRV+ R+YL L + S +G GRP YR Sbjct: 185 TALSAAEVGERLGISRVTARRYLEHLERIRRVRRSARHGGRGRPEQEYR 233 >UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7C4_BREBN Length = 239 Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 12/232 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +I V+I++DD + A + ++ +++ GFQ TA+T ++A E++ + TP D++LLDIY+ Sbjct: 5 LITVMIVEDDEIAARIYEQFTSKLEGFQIIATATTGKQALEML-HVVTP-DVLLLDIYLP 62 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+DLL + DV++I++A D T+++++ G Y+IKP +F L + Sbjct: 63 DMNGIDLLREVRKHFRGIDVVMITAANDVETVREAIRGGAYSYIIKPIMIDKFMSTLEQY 122 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDP-----RRLPKGLTPQTLRTLCQWIDAHQ 175 + L++H DQ +D+L ++ LPKG+ TL+ + D Q Sbjct: 123 ANTRHQLQQHTTIDQTAVDKLFTKAAHTPATKTVGTVTSLPKGIDKLTLKLIR---DKMQ 179 Query: 176 DY--EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + + D+LA +S + R+YL +LV+ + + YG GRP +YR Sbjct: 180 ETTQSMNADDLAALAGMSHSTVRRYLEFLVSINEVTVETFYGTVGRPERKYR 231 >UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJA4_BACSK Length = 223 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 9/226 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + ++I +DD VAE++ +++ ++ A +A + N P D++LLD+Y+ Sbjct: 1 MKIMIAEDDYRVAEIHEQFLKKMKNVDVVAKAQNATEAVSLA-NMHQP-DVLLLDVYLPD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+D+LP LH A +++I++A + +L GVVDYL+KP R ++++ + Sbjct: 59 RLGVDVLPELHQACPDMQIVLITAATEKTIFHKALQNGVVDYLVKPIAFERLQQSVDKAK 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKG---LTPQTLRTLCQWIDAHQDYE 178 + L+ Q DQ DQ G+ + P LPKG LT + +RTL + Q Sbjct: 119 SLRKWLQDKQPVDQQAADQFFQGAKTKHAPPEALPKGIDQLTLERVRTLLR----QQSEG 174 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + + L + SR + R+YL +L++ + + YG+ GRP +Y Sbjct: 175 VTAEALGRKFGASRTTSRRYLEYLISTNEAKAELEYGIVGRPERKY 220 >UniRef50_A4FB60 Two-component system response regulator n=4 Tax=Actinomycetales RepID=A4FB60_SACEN Length = 222 Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 21/230 (9%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI V ++DDD VA+++ + ++P F+ G A + E+A+E++ ++ P DL+LLD Y+ Sbjct: 1 MIRVAVVDDDFRVAQVHAEFTERVPDFKVVGVAHSAEQARELV-DTRNP-DLVLLDNYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+ LL A D I++++A D A+++ +L G ++YL+KPF A + LT + Sbjct: 59 DRSGIALL-----AELDVDAIMLTAATDPASVRAALAAGALNYLVKPFTAEQLGSRLTAY 113 Query: 121 RQKKMALE-KHQYYDQAELD---QLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + + L DQ E+D +L+H E D PKG +P T + + +DA Q Sbjct: 114 ARYRGRLPVTGGAVDQDEIDRAMRLLH-----EGDRPAAPKGQSPLTSQLV---LDALQR 165 Query: 177 YEF--STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 E S E+A E+ I+R + ++YL L ++ YG +GRP ++Y Sbjct: 166 GESARSAAEIAEELGIARATAQRYLAALAQDGKARMTLRYGASGRPEHQY 215 >UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacillaceae RepID=B1HPS7_LYSSC Length = 229 Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 126/227 (55%), Gaps = 5/227 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL+I+DD VA+++RR++ +I GF A+T E+A + + S P LILLD+++ Sbjct: 4 IEVLVIEDDVRVADVHRRFLEKIEGFTVIACANTGEEALDWL-QSFAP-QLILLDVFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+DL+ + S +I+I++A +A ++ + V DY++KPF + +E++ +R Sbjct: 62 ILGVDLIDKIKKMSPTSSIILITAATEAHIVQKAYRKNVTDYILKPFTFDQLKESIEKFR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSN--EQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 K + L+ ++ + Q ++ L ++S+ E LPKG+ T+ + ++ +D Sbjct: 122 FKHLLLQNNEKFTQEKIQCLWPKTASSIPEDTQLLLPKGIDLTTMNHVINYLSTRKDGS- 180 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + + L + +SR + R+YL +LV + + YG GRP RY I Sbjct: 181 TAELLGKNIGVSRSTARRYLEFLVTQKQAYIELTYGTVGRPERRYFI 227 >UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinomycetales RepID=C7QAY5_CATAD Length = 243 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL++DDD VA+++ YV +IPGF G A + +A ++ DL+L+D+Y+ Sbjct: 12 VTVLVVDDDYRVAKIHAAYVDRIPGFTVAGQAHSAAQALHLVAAIRP--DLVLMDVYLPD 69 Query: 62 ENGLDLL------PVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEE 115 +GL ++ P + D +VI++A D +T++ ++ G V YL+KPF E Sbjct: 70 GDGLTVIRKLLEAPESAASGPHPDFMVITAARDVSTVRTAMQLGAVHYLVKPFGYPAMAE 129 Query: 116 ALTGWR--QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDA 173 LT + +++M DQA++D+L P KG + TL + + A Sbjct: 130 KLTSYLDLRRRMQTLNTADADQADVDELFGLLRGQPALPTLPAKGHSAPTLELVRSAVRA 189 Query: 174 HQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + S E+A V ISR + ++YL +L ++ + YG TGRP +RY Sbjct: 190 APG-DISASEVAERVGISRPTAQRYLSYLTRHGVVRLQLRYGTTGRPEHRY 239 >UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus HB8 RepID=Q53VZ6_THET8 Length = 217 Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 19/225 (8%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 LI++DD VA L+R ++ + G + G A TL +A F + P DL+LLD+Y+ Sbjct: 10 QALIVEDDRRVAALHRAFLEE-EGLRVGGIAGTLREA--WAFLEENP-DLVLLDLYLPDG 65 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +GL+LLP L +VI++A D T++ +L G +DYL+KPF SR EAL +R Sbjct: 66 HGLELLPALEGVYT----VVITAARDVPTVERALLGGAMDYLVKPFGRSRLREALARFRA 121 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 + L+ + QA++D+L+ R+ PKGL P TL + + + + + Sbjct: 122 FQ-NLKAKKEVSQADVDRLL--------GRRQAPKGLDPLTLGRVLALLQGGKP--LTAE 170 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 E+A + +SRV+ +YL L + YG TGRP YR++ Sbjct: 171 EVAEALGLSRVTAWRYLEALRREGRVRAEPRYGGTGRPSRAYRLE 215 >UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacillaceae RepID=B1HPQ0_LYSSC Length = 273 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 113/216 (52%), Gaps = 21/216 (9%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTAST----LEKAKEIIFNSDTPIDLILLD 56 +INVL+I+DD MV E+NR+++ QI GF G AS ++K K++ TP +L+ +D Sbjct: 3 VINVLLIEDDPMVREVNRQFIEQIKGFSLVGYASNGIEGIQKIKQL-----TP-ELVFID 56 Query: 57 IYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 I+M +++G+ L + DVI +++A D T++ LH GV DY++KPF R E+ Sbjct: 57 IFMPEQDGIITLGKIREEHLPVDVIAVTAANDMPTVQRILHLGVYDYIMKPFTFERIEQT 116 Query: 117 LTGWRQKKMALEKHQYYDQAELDQL----------IHGSSSNEQDPRRLPKGLTPQTLRT 166 L +R + + Q Q ++D L I + + LPKG TL Sbjct: 117 LKNYRSYRKKISGMQDLTQHDVDHLMQQRLPEQVVITTAGTEAITIEELPKGFNRATLDK 176 Query: 167 LCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWL 202 + +I S +E++ + +RV+ R+YL +L Sbjct: 177 VFAYIQTSGG-AVSAEEVSTYIGTARVTARRYLDFL 211 >UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=Bacillus halodurans RepID=CITT_BACHD Length = 230 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 111/222 (50%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VLII+DD VA++ + V P F T T +A + + +DLILLD+Y+ Sbjct: 6 KVLIIEDDFRVAQIQEQMVNDHPYFHVISTCRTGGEALDYLSEKAAALDLILLDVYIPDV 65 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 GL+LL + D++++++A + T++++L G++DYL+KP Q + L + Q Sbjct: 66 KGLELLWAIREKFRDVDIMMVTAAKEVDTVQEALRGGIIDYLLKPVQKEVLHQRLDAYVQ 125 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 K+ + + Q ELDQL + LPKG+ TL + ++ + + Sbjct: 126 KRELFGERRQVSQEELDQLRQVQVRVQVGETPLPKGIDRLTLEKVVNALEEAETQGLTAM 185 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 E A + SR + R+Y +L++ ++YG GRP RY Sbjct: 186 EGARLIGASRSTVRRYFEYLIHTKKAKAEVNYGDVGRPERRY 227 >UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=Aeromonas RepID=A0KHN5_AERHH Length = 230 Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I L+I+DD + + V+ PGF G A +L +A +++ + P L+L+DI + Sbjct: 4 IFTLVIEDDERIGSILAELVSSTPGFSLLGRAESLTQA-DLMMRAAQP-QLLLVDISLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+ + L + ++ VI+++++ D TI+ +L+ GV DY+IKP + R +++L Sbjct: 62 GSGLEWVNRLRSHNREAYVIMVTASCDVETIQQALNQGVQDYIIKPLRLFRIQQSLDEIL 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + +Q++LD+L+ ++ R PKG+ TLR + + + D FST Sbjct: 122 TLHRRICERGSLEQSDLDRLMGKVRPQGREVRDTPKGIDAITLRQVLELLAGEPDSAFST 181 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 D +A +++SR + R+YL +L + + ++YG GRP RY Sbjct: 182 DTVALRLSLSRTTARRYLEYLESEDRVDVDLNYGQRGRPERRY 224 >UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Corynebacterineae RepID=A1UKS8_MYCSK Length = 233 Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 12/230 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDT---PIDLILLDIY 58 I+VLI++DD ++AE ++ Y++++ GF A T A + T PIDL+LLD+ Sbjct: 6 ISVLIVEDDPLIAEAHQTYLSRLTGFATAAVAHTARDAMRAASEAATGEHPIDLVLLDLG 65 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + G+ L L R D+I I+S D ++ ++ +G + YL+KPF + F + L Sbjct: 66 LPDATGISLASALSGLRPAPDIIAITSERDLEMVRAAVSHGALAYLLKPFTFAAFRDRLE 125 Query: 119 GWRQKKMALEKH-QYYDQAELDQL---IHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAH 174 +R+ + AL Q E+D+ + GS+ D PKG P T + + + Sbjct: 126 RYRRYRDALPAGIDAASQTEVDRALAELRGSA----DRATAPKGTAPGTNDEIARAVRDS 181 Query: 175 QDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 D + D++A++V +SRV+ +YL L + + YG GRP RY Sbjct: 182 AD-GLTADQVASQVGVSRVTAWRYLERLADDGTVTRLTDYGRAGRPKTRY 230 >UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6P1_THEAS Length = 224 Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 14/230 (6%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEII--FNSDTPIDLILLDIYMQ 60 +LI +DD + L + ++ + G G + +E++ F +L+LLDIY++ Sbjct: 5 GLLIAEDDPSMVRLYKAFLQGVEGVSLLGVTPS---GEELLRYFRRGGRAELLLLDIYLE 61 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+D+L L DVIV++S + T+ +++ GV DYL+KPF SRF AL Sbjct: 62 GSNGVDILRELRGMGVDLDVIVVTSESSPRTVGEAMRLGVFDYLVKPFGGSRFGRALDDL 121 Query: 121 RQKKMALEK-HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + +++ + Q ELD+L+ G LPKGL TL+ + + E Sbjct: 122 VAFRRRIDRVNSRMSQDELDKLLGGGEEE------LPKGLHRSTLKGILSLLSCFG--EA 173 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 + D L+ E+ +S+ S R+Y+ +LV + + + GRPV YR+ ++ Sbjct: 174 TVDRLSEEMGLSKSSVRRYMDYLVREGEVELRLKHLGRGRPVNVYRLPSD 223 >UniRef50_UPI0001C42291 response regulator receiver/unknown domain-containing protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42291 Length = 227 Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI++DD MVA +N+ Y+ ++ F + E+A I I+L+LLD+YM K Sbjct: 3 IKTLIVEDDPMVASINQGYLEKLDSFFVVDIVTNGEEALSKI--RMKKIELLLLDVYMAK 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGL+LL + K DVI+I++A I++ GVVD ++KPF RFE +L + Sbjct: 61 MNGLELLRRIRKENEKIDVIMITAADSPEIIEEIFRLGVVDCILKPFDFKRFERSLLTYY 120 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ + +Q+ +D + + + LPKG+ TL T+ + + + Sbjct: 121 KRYNMFNTKEPMNQSIIDSININEENKKLTFNPLPKGIDSITLNTIRKVL-KEAPCPLTI 179 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP--VYRYRIQ 227 EL V IS+++ RKYL +L + + ++Y GRP +Y Y+++ Sbjct: 180 QELEKHVQISKITIRKYLEFLALNNEIKLDLNYSTKGRPSKLYSYKLK 227 >UniRef50_C2ASC2 Response regulator of citrate/malate metabolism n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2ASC2_TSUPA Length = 220 Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 15/225 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL++DDD VA ++ + V +PG G+A T+ +A+ +I +DL L+D+Y+ Sbjct: 6 IRVLVVDDDFRVAAMHAKIVDTMPGLVTVGSARTVSEARAVIARER--VDLALVDVYLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+DL+ L RC D ++ +A DAA+I+ G + YLIKPF A+ + G+ Sbjct: 64 GSGIDLVREL---RC--DAFILGAADDAASIRAGFAAGALQYLIKPFPATELARRIGGYT 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY--EF 179 + ++ Q ++D S P+R G T + +DA +D Sbjct: 119 SYRRIVDGGAIT-QEQIDAAASALRSERVVPKRDDGGSV-----TERRIVDALRDAGSPL 172 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 DE+A V +S + R+YL V L ++ YG TGRP RY Sbjct: 173 LADEIAERVGVSPATARRYLADQVRAGTLTMALQYGTTGRPRQRY 217 >UniRef50_C8NS01 Two component system response regulator n=6 Tax=Actinomycetales RepID=C8NS01_COREF Length = 218 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL++DDD VA+L+ V PGF GTA T+ +A+ +F ++ P+DL+L DIY+ Sbjct: 5 LQVLVVDDDFRVADLHAAAVEAAPGFTVVGTARTVAEAR--VFLAEHPVDLLLADIYLPD 62 Query: 62 ENGLDLLPVLHNARCKS-DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+ L AR D ++S+A D T++ +L G + YL+KPF + L + Sbjct: 63 GDGITL------ARASDVDAFILSAADDVPTVRRALRAGALAYLVKPFPQRVLIDRLDRY 116 Query: 121 RQKKMALEKHQYYDQAELDQ---LIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 + + L Q Q ++DQ +++G+ Q P + + T Q L +DA D Sbjct: 117 ARYRHVLSGSQGLSQEKVDQALAILNGA----QAPTPVSRSATEQLL------LDALGDG 166 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 E S E A +SR + ++ L + + ++ + YG +GRP + Y Sbjct: 167 ELSASEAAELAGVSRATAQRRLAAMASSGLVQVRLRYGQSGRPEHLY 213 >UniRef50_UPI00016939E4 two-component response regulator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016939E4 Length = 321 Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 87/149 (58%), Gaps = 4/149 (2%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VL+I+DD MV E+NR+++ ++ GF+ GTA+T + ++ + DLI LDIYM + Sbjct: 11 TVLLIEDDPMVQEVNRQFIERVEGFRVIGTAATGSEGLRLVRELEP--DLIFLDIYMPSQ 68 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +G + L L DVIV+++A DA TI+ + G+ DY+IKPF+ R +AL +R Sbjct: 69 DGTEALRKLRAEALPVDVIVVTAAKDAPTIRQMIRKGIRDYIIKPFKFERVRDALEQFRA 128 Query: 123 KKMALEKHQYYDQAELDQLIH--GSSSNE 149 AL Q ELD+++H G S E Sbjct: 129 HHTALMAEGTLSQVELDEILHRTGERSGE 157 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 155 LPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHY 214 LPKGL P T+R + ++ Q S +E+A+ V I+RV+ R+YL +L + I Y Sbjct: 245 LPKGLNPATMRQIIYFV-RQQKKALSAEEVADGVGIARVTARRYLDYLEKSRQVRLVISY 303 Query: 215 GVTGRPVYRY 224 G GRP+ RY Sbjct: 304 GGIGRPINRY 313 >UniRef50_B1W256 Putative two-component system response regulator n=4 Tax=Streptomyces RepID=B1W256_STRGG Length = 217 Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 106/220 (48%), Gaps = 12/220 (5%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA+L+ RYV+ + GF G A A + DL+LLDIY+ +G+ +L L Sbjct: 1 MVAKLHSRYVSAMDGFAVVGVAHN--GADALRAAERLRPDLVLLDIYLPDMDGIGVLRAL 58 Query: 72 HNA------RCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKM 125 A R +D + I++A DA I+ +L G + YLIKPF S +E + + Sbjct: 59 RAAEERDASRPSADALFITAARDAGVIRAALRAGALHYLIKPFSRSALQEQMRHVASLRT 118 Query: 126 ALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELA 185 L++ Q ++DQ+ + R LPKGL T + + + +H D S E A Sbjct: 119 RLDRLGEARQEDVDQIF---GTRPPGSRELPKGLAAPTADLVERVLRSHPD-GLSASECA 174 Query: 186 NEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +SRVS R+YL ++ YG TGRP RYR Sbjct: 175 EVGALSRVSARRYLEHFAGTGRAEVTLRYGGTGRPERRYR 214 >UniRef50_Q8NU70 Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=2 Tax=Corynebacterium glutamicum RepID=Q8NU70_CORGL Length = 218 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 20/226 (8%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL+IDDD VA ++ V PGF GTA TL +AK +I + +P DL+L+D+Y+ Sbjct: 5 LKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLI-ATFSP-DLLLVDVYLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+DL+ D V+S+A D T++ ++ G + YL+KPF R E L + Sbjct: 63 GDGIDLV-----GTSNIDAFVLSAADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDRYV 117 Query: 122 QKKMALEKHQYYDQAELDQ---LIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 + + L Q Q ++DQ +++G+ Q P + + T Q L +DA + E Sbjct: 118 RYRHVLSGTQGLSQDKIDQATAILNGT----QAPVTVSRSATEQLL------LDALEGQE 167 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S E + +SR + ++ L + + ++ + YG +GRP + Y Sbjct: 168 LSATEASEAAGVSRATAQRRLAAMASQGVIQVRLRYGQSGRPEHLY 213 >UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J1H7_DEIGD Length = 217 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 12/225 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 I LI++DD +A L+R + F+ GTA TL+ A+ ++ + P DL+LLD+Y+ Sbjct: 3 FIRTLIVEDDPRIARLHRGQLEGAGDFEVLGTAETLQVAR-VMAETLCP-DLLLLDVYLP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 GLDLL L + D +++++A+D +++++L G DYL+KP RF AL Sbjct: 61 DGRGLDLLRELRARGQRVDAVLLTAASDIPSVQEALALGAADYLVKPCTPERFALALDRV 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R++ AL + + Q LD L P GL P+TL + + + + Y S Sbjct: 121 RERS-ALWQQEAVRQGHLDALF-------ARPPLPASGLDPETLHRVRATLRSGRAY--S 170 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 EL + +SRV+ +YL LV + GRPV RYR Sbjct: 171 ARELGQTLGLSRVTAWRYLEHLVEAGEACAATDVRGIGRPVKRYR 215 >UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF749E Length = 221 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 29/227 (12%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 ++VL++DDD VA ++ VA +PGF GTA+T+ A+E +DL L+D+Y+ Sbjct: 6 LSVLVVDDDFRVANMHAGVVAAMPGFTVTGTANTVAAAREA-----PAVDLALVDVYLPD 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+D + L +SD +++++A +A T++ ++ G + YL+KPF + L+G+ Sbjct: 61 GSGIDFVREL-----RSDSMILTAATEAETVRAAMAAGALSYLVKPFPTTELAARLSGYA 115 Query: 122 QKKMALEKHQYYDQ---AELDQL-----IHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDA 173 + + L + A LD L SS+ P K L Q L+T Sbjct: 116 RYRKILAGANLSARDVDAALDALRPRLAPAQSSATAASPT---KQLVLQALKT------- 165 Query: 174 HQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP 220 S E+A + ISR + ++YL + + + + YG TGRP Sbjct: 166 -SQTPMSAAEVAAAIGISRATAQRYLAAMASSGDVSVGLRYGATGRP 211 >UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8F3_GORB4 Length = 233 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 12/226 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTP-IDLILLDIYMQ 60 + VLI+DDD+ VA L+ V + GF+ TA ++ A+ + +D P +DL LLD+Y+ Sbjct: 17 LAVLIVDDDSRVAALHAAIVEAMRGFRVAATAGSIAGARAAL--ADHPHVDLALLDVYLP 74 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+DL+ L D V+ + DAA ++ ++ G + YLIKPF + L G+ Sbjct: 75 DGSGIDLVGDL-----PCDCFVVGAETDAAAVRTAMRSGALAYLIKPFDDAELARRLAGY 129 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q + L+ ++ DQ +D + + R G +P R L + A D Sbjct: 130 AQYRRVLDA-EHVDQRAVDGALSALRFGTRPADRDDPG-SPTEKRILELF--AAADGPLF 185 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 D+++ + ++ + R++L LV L ++ YG TGRP YR+ Sbjct: 186 ADDVSAAIGVAAPTARRHLANLVAAGKLSMTLRYGTTGRPRQEYRL 231 >UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech586 RepID=D2BTF7_DICD5 Length = 215 Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 4/208 (1%) Query: 20 YVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVLHNARCKSD 79 ++ + P F G+A TL A+ + + P DL++LD Y+ G+D++ L + + D Sbjct: 8 FIRKHPEFLLLGSADTLADAR-LAIAAQKP-DLVMLDNYLPDGTGIDMMKHLRATQPEVD 65 Query: 80 VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELD 139 VI I++A D TIK ++ +G DYL+KPF R EEAL + + + + Q E+D Sbjct: 66 VIFITAANDIETIKAAIRHGASDYLVKPFILERLEEALKNYLMFNRKVAQKSHLQQDEID 125 Query: 140 QLIHGSSSNEQDPRRL-PKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKY 198 ++I S + + PKG+ TL + + + + D L++ + IS+ + R+Y Sbjct: 126 RVIRQSIPHHVPAGFIYPKGIDELTLNQVRAAFSG-EHTQHTADSLSDMIGISKSTARRY 184 Query: 199 LIWLVNCHILFTSIHYGVTGRPVYRYRI 226 L + N +L I +G GRP YR+ Sbjct: 185 LEYCKNIKLLEAHIQHGTVGRPQRFYRL 212 >UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism n=4 Tax=Vibrio RepID=Q8D7P7_VIBVU Length = 224 Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 117/225 (52%), Gaps = 7/225 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI V+I++DD +AEL++ ++AQ+ F+ G A+ L A+++I + DL+++D Y+ Sbjct: 1 MIKVVIVEDDERIAELHQFFIAQLDNFEVIGIAANLTTAEQLIIAAKP--DLVIIDNYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G++L+ + K + IVI++A DA T+ + YG DYL+KP +R + +L Sbjct: 59 DGLGVELVQRCLVLQPKPECIVITAANDANTVHLAHRYGAFDYLVKPVNYTRLQASLLRL 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + K ++ + Q+ELD + H + + G+ TL+ + H E + Sbjct: 119 MKMKQLVDSQKMVKQSELDGIFHATELVVDE----ASGVDEFTLQQVVSLF-PHGHSEHT 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +A + +S+ + R+YL V L+ + +G GRP YR Sbjct: 174 AASVAALLGVSKSTARRYLDKAVERGDLYAFLAHGKVGRPTRCYR 218 >UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ELH7_OCEIH Length = 222 Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 18/233 (7%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTAST----LEKAKEIIFNSDTPIDLILLDI 57 +NVL+ +DD VA+++ +Y+ + Q A+T L K KE F DL+LLD+ Sbjct: 1 MNVLVAEDDYRVADIHCQYLEKFQDIQYIERAATAYETLAKLKENKF------DLLLLDV 54 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 Y+ E G++++ +I+I++A D +K + GV+DYLIKP R +A+ Sbjct: 55 YLPDELGINMIETYKQEHAALQIILITAATDIEMLKKAYLSGVIDYLIKPIALDRLADAI 114 Query: 118 TGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQ---DPRRLPKGLTPQTLRTLCQWIDAH 174 + + + Q DQL N+Q + + PKG+ TL+ + + + Sbjct: 115 NKAVKNHQFIRSQGEFTQQLADQLFQ----NQQEIMEKQEYPKGIDELTLKKVNEVLQ-K 169 Query: 175 QDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 Q + D++ ++ +SR + R+YL +L++ + YG+ GRP +Y Q Sbjct: 170 QSSGMTADQVGKDIGVSRTTARRYLEYLISVGKAKAELEYGIVGRPERKYVTQ 222 >UniRef50_B1W048 Putative two-component system response regulator n=13 Tax=Streptomyces RepID=B1W048_STRGG Length = 224 Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 9/226 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL+++DD + A+ ++ YV ++ GF A T +A + TP+DL+LLD+Y+ Sbjct: 1 MIRVLVVEDDPVAADAHQMYVERVEGFTVTAVAHT--RAAAVRALERTPVDLLLLDLYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL LL L + +DVI ++SA D A +++ + GVV Y++KPF + L + Sbjct: 59 DGHGLGLLRSLRASGHGADVIAVTSARDLAVVREGVSLGVVQYVLKPFTYPTLRDRLVRY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + A + Q E+D+ + + P LPKGL+ TL + + + E Sbjct: 119 AEFRGA--AGEASGQEEVDRAL--GALRVAHPAALPKGLSGPTLEAVTGVLK--ESPEGV 172 Query: 181 TDELANE-VNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 T A E + ISR++ R+YL LV HYG GRP YR Sbjct: 173 TAAAAGERLGISRITARRYLEHLVTVGSAARRPHYGQVGRPELHYR 218 >UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteobacteria RepID=A1REF6_SHESW Length = 225 Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 118/222 (53%), Gaps = 4/222 (1%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 +II+DD + + Q P F+ + T + A + ++ P L+ +DI + +G Sbjct: 1 MIIEDDPKASYALESIIHQHPDFEVVVVSETYQDAL-MHYDLYKP-QLVFVDITLPDGSG 58 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 ++++ L + I+ ++ +A T++ + GV DYL+KP + SR +AL ++ + Sbjct: 59 INVIKQLRSQGANCYFIMTTAEREATTVEQVVQLGVSDYLVKPLRMSRVRQALDDYKLYR 118 Query: 125 MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDEL 184 L H+ DQ +D ++ G +N RR PKG+ TL TL + Q EFS D++ Sbjct: 119 QKLACHETMDQCVIDHIL-GKRTN-LPMRRTPKGIDANTLDTLKDILRKEQLTEFSGDDI 176 Query: 185 ANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 ++ +N+SR++ R+YL +L + ++ ++Y GRP Y++ Sbjct: 177 SDRMNVSRITIRRYLEYLESEGVIKMVLNYKTGGRPSRVYQL 218 >UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammaproteobacteria RepID=C3LT43_VIBCM Length = 227 Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 114/220 (51%), Gaps = 3/220 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +I+VLI++D+ +A+++ Y+ Q F+ G A ++ +A+ ++ LI LD Y+ Sbjct: 4 LIDVLIVEDETSIADVHSFYLKQTARFRPVGVAQSINEARNMV--RILKPKLIFLDNYLP 61 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G++ L L + DVI I++A+D T+++++ GV DYL+KP R + +L + Sbjct: 62 DGRGIEFLKELTHQPQAPDVIFITAASDMETVREAVRCGVFDYLLKPIAYDRVQNSLERY 121 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + +L + +Q +D+L + + +Q LPKG+ TL + + ++ Sbjct: 122 LKYISSLRANDSVNQRHVDELFNFQAKTDQ-LDGLPKGIDELTLIKIQEIYHHEPQAAYT 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP 220 + L + IS+ + R+YL + V L I +G GRP Sbjct: 181 AELLGQAIGISKTTARRYLEYCVASGFLEACIQHGRVGRP 220 >UniRef50_UPI0001C32222 response regulator receiver and unknown domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32222 Length = 230 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 13/226 (5%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTP-IDLILLDIYMQK 61 VLI +DD VA L+R + + P F+ G A E ++++ + T DL+LLD+ ++ Sbjct: 5 RVLIAEDDPDVARLHRLLIERHPAFKAIGVA---EAGEQVLRDVATQRPDLVLLDLELRG 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL++L + +VI +++A D ++ + G+VDYL+KPF R AL + Sbjct: 62 MDGLEVLSWMRRLAYDVEVIAVTAADDREIVRRMMRLGIVDYLVKPFTPERMRVALARFS 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRR-LPKGLTPQTLRTLCQWIDAHQDYEFS 180 ++ L + + Q ++ D RR LP+GL TL L Q + AH S Sbjct: 122 ERVAGLPG------STVTQAAVDAALGAADARRLLPRGLQADTLDRLRQEL-AHAGEWLS 174 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSI-HYGVTGRPVYRYR 225 T EL V+++ V+ R+YL +LV T + YG GRP YR Sbjct: 175 TQELGGRVDVAAVTVRRYLEYLVVNQEAVTRLDGYGSPGRPRKLYR 220 >UniRef50_Q0RQX5 C4-dicarboxylate two-component system response regulator n=13 Tax=Actinomycetales RepID=Q0RQX5_FRAAA Length = 233 Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 4/229 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI+D DA +AE V QIPGF G + +A E F S L+LLD+ + Sbjct: 6 IRTLIVDGDARLAEQEGGIVDQIPGFTVVGIVHSGAEALE--FVSRGHPQLVLLDLLLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW- 120 G+++ L + D+I ++SA+D AT++ +L YGV YL+KP A+ + L + Sbjct: 64 TTGVEVCRTLRSRGAALDIIAVTSASDLATVRAALSYGVAQYLVKPLSAATLRDRLHRFA 123 Query: 121 -RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +++A + Q E+D+ + PKG++ TL ++ + A Sbjct: 124 AAHRQLATATPHHLSQGEVDRALAALRPAVAPIADQPKGVSATTLDSVVAQLRARAGRPA 183 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 S +++A + +SR + R+YL L + S YG GRP YR Q Sbjct: 184 SAEDIAAAIGVSRATARRYLEHLAVHRLAIRSHRYGRCGRPGNLYRWQG 232 >UniRef50_B8K774 Response regulator of citrate/malate metabolism n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K774_VIBPA Length = 223 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 14/228 (6%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLII+DD +A L+ +++++ FQ A L +A + + T DL+++D Y+ Sbjct: 1 MFNVLIIEDDRNIAALHSQFISRDNRFQVLAIAENLAQAHSKL--AQTVFDLVIIDNYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G+D L + + I++++A D T++ +L G +DYL+KP RF ++L + Sbjct: 59 DGLGIDFLQQMRKLPNPPESILVTAANDVETVQKALRCGALDYLVKPLDYQRFAQSLEKF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIH-GSSSNEQDPRRLPKGLTPQTLRTLCQWIDA--HQDY 177 + L Q ELD L G SN++ + TL Q +D H + Sbjct: 119 ALVQHTLSHGISLAQGELDALFQKGVPSNKK---------SSTDAHTLKQILDEFYHANV 169 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 E S +A +IS+ + R+YL V L + +G GRP YR Sbjct: 170 ELSVSAIAESFSISKSTARRYLDKGVEQGELEAFLAHGKVGRPTRIYR 217 >UniRef50_C9Z825 Putative two component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z825_STRSW Length = 231 Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 14/229 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +LI+DDD +V R V +I GF+ A T +A + +L+LLD+++ Sbjct: 8 ITLLIVDDDPVVTTALRAQVNRISGFRVVAIAHTGREA--LAATRRFAPNLVLLDLHLPD 65 Query: 62 ENGLDLLPVLHNAR----CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 GLD V H R +DVIVIS + ++ ++ ++ G + YLIKP + E+ L Sbjct: 66 IPGLD---VAHQLRRPDYPPTDVIVISGSRESTAVRAAMQRGALHYLIKPARTGTVEQTL 122 Query: 118 TGWRQKKMALEKH-QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + L +Q +D++ S D P G++P T + + + A Sbjct: 123 LRYAAASAHLSAGASMVEQRAIDRVFR---SLHLDAVVRPTGISPATEQVVLDALAA-AG 178 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + S E A V ISR + R+YL L + + S+ YG++GRP +RYR Sbjct: 179 RDLSAHETAEAVGISRATARRYLEHLADRGEVVASLRYGLSGRPQHRYR 227 >UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinococcus deserti VCD115 RepID=C1CYN9_DEIDV Length = 219 Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 12/224 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI++DD +A+L+RR + + GF+ G+A TL A+ + + DL+LLD+++ Sbjct: 6 IRTLIVEDDPQIADLHRRLLERAGGFEVLGSAETLRIARAM--SRTLRPDLLLLDVHLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 GLDLL L + D +++++A+DA++++ +L +G DYL+KP RF AL R Sbjct: 64 GRGLDLLRELRLEGAQVDAVLVTAASDASSVQSALLHGAADYLVKPATPERFALALERVR 123 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ AL + Q LD L + + GL +TLR + + + Sbjct: 124 ERA-ALWAQRDVRQGHLDALFTPLADDA-------SGLDAETLRRVRAAL--RDGAAHTA 173 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 E+ + +SRV+ +YL +L + + GRP RYR Sbjct: 174 QEVGQALGLSRVTAWRYLEYLTAQGEVSAAADARSVGRPAKRYR 217 >UniRef50_C4X351 Two-component response regulator for citrate n=21 Tax=Bacteria RepID=C4X351_KLEPN Length = 233 Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 7/227 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +++VLII+D++ +A L+ V + P + G A++L +A++++ TP L+LLD Y+ Sbjct: 6 LVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHA--TPPQLVLLDNYLP 63 Query: 61 KENGLDLL--PVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 G+ L+ P L ++C VI I++A+D T ++ G DY++KP R ++L Sbjct: 64 DGKGVTLMTDPALATSQC--SVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLE 121 Query: 119 GWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 + Q + + DQ +D L + N + KG+ +TL + + + Sbjct: 122 RFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSG-SKGIEEKTLALVQGLFSDREAHC 180 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 FS DE+ + +S+ + R+YL V L + YG G P YR Sbjct: 181 FSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYR 227 >UniRef50_UPI0001BC2D80 two-component system response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D80 Length = 218 Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 25/232 (10%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVL++DDD V +++ RYV ++ GFQ L A+ II ++ +DL+L D + Sbjct: 1 MINVLVLDDDFYVGQIHCRYVNEVAGFQALEPVRDLRTARTII--AEEQVDLLLADYVLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + NG++L+ D IV+S+ D ++ +L G + Y+ KPF A ++ L + Sbjct: 59 EGNGVELI-----RETDVDAIVLSAVTDPDVVRSALRAGAMTYIFKPFAAEELQDFLRRY 113 Query: 121 RQKKMALEKHQYYDQAELDQ--------LIHGSSSNEQDPRRLPKGLTPQTLRTLCQWID 172 + + +Y+D+ ++ Q +H +S P KG T + + ++ Sbjct: 114 ARFR------RYWDREKVSQPDLERQLRSLHDVASPGSAP---AKGSGSSTSGRILEALE 164 Query: 173 AHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + D + E++ V SR + +++L L + S+ YG TGRP + Y Sbjct: 165 S-ADQPLTAMEVSEVVGTSRATAQRHLAKLAESRAVTVSLQYGSTGRPEHLY 215 >UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax=Enterobacteriaceae RepID=CITB_KLEPN Length = 234 Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 4/220 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI++D+ M+AE+ + Q P F G A LE A++ + LILLD ++ Sbjct: 4 ITTLIVEDEPMLAEILVDNIKQFPQFDVIGIADKLESARKQLRLYQP--QLILLDNFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+DL+ + K +I I++ TI ++L GV DYLIKP R + L + Sbjct: 62 GKGIDLIRHAVSTHYKGRIIFITADNHMETISEALRLGVFDYLIKPVHYQRLQHTLERFA 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLP-KGLTPQTLRTLCQWIDAHQDYEFS 180 + + +L + Q +D L + + + +P P +G+ T + + Q A + Sbjct: 122 RYRSSLRSSEQASQLHVDALFNIQAREQTEPASAPLRGIDESTFQRVLQLF-ADPTVVHT 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP 220 D LA + S+ + R+YL V L I YG GRP Sbjct: 181 ADSLARILGSSKTTARRYLEQGVKNDFLEAEISYGKVGRP 220 >UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S8J9_9ACTO Length = 228 Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 26/235 (11%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL+++++A A+L +V ++ F AST A + + +DL+LL +++ Sbjct: 1 MRVLVVENEATTAQLLVGHVQRLRDFAVTEQASTGADALRRL--APGHVDLVLLGVHLPD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 + LDLL L A C V+ +++ D + I+ +L +GVV YL+KPF + E Sbjct: 59 MSWLDLLRTLRGAGCTVGVVAVTATHDLSVIRTALAFGVVHYLLKPFTFTSVRE------ 112 Query: 122 QKKMALEKHQYYD-----------QAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQW 170 LEK++ Y Q E+DQL+ + D RLPKG++ ++L+ + Sbjct: 113 ----QLEKYEAYRSLRNVGELVLVQQEVDQLL--GVLRDADENRLPKGISRESLQAVTAA 166 Query: 171 IDAHQDY-EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + S E+A + ISRV+ R+YL +LV+ Y GRP Y Sbjct: 167 LKRCSGLGGVSAAEVARALGISRVTTRRYLEFLVDKGAAHRRARYRGPGRPELEY 221 >UniRef50_C2IT51 Response regulator of citrate/malate metabolism n=13 Tax=Vibrionaceae RepID=C2IT51_VIBCH Length = 227 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 114/230 (49%), Gaps = 19/230 (8%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M+NV+I++DD + L+ ++V Q F STL A++++ + DL+++D Y+ Sbjct: 3 MLNVIIVEDDPQIGGLHAQFVQQDERFNVLAMVSTLADAQKMVEWAKP--DLVIVDNYLP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G++L+ L + + K I++++A D T + + +G DY++KP R E+L + Sbjct: 61 DGLGIELVRALIDVQPKPACILVTAACDLETAQQAYRFGAFDYVVKPVDYRRLAESLQRF 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTL---RTLCQWID--AHQ 175 + + + Q +LD+L H P+ PQT TL Q ++ +H Sbjct: 121 YRLRHPEPFSKAVRQQDLDELFH------------PQRSKPQTTIDDFTLEQMLEHFSHT 168 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + E + D +A + IS+ + R+YL V + + +G GRP YR Sbjct: 169 NVEHTADSMALRLGISKSTARRYLDSAVEAGEITAYLEHGKVGRPTRVYR 218 >UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKA0_BACSK Length = 240 Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 10/232 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD + A + + + F G A T + K+++ TP DL+LLD+ + Sbjct: 6 IGVLIVEDDPVAASVYEQLIQSKLDFTIVGKAETAKATKQLL-QVITP-DLVLLDVQLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG+DLL + DVI+I+++ DA T+ ++ G Y++KP RF + L ++ Sbjct: 64 ANGIDLLFHIKQLDHHVDVILITASNDAQTVGEAKRGGAFSYMLKPIIVDRFFQTLEEYK 123 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNE-------QDPRRLPKGLTPQTLRTLCQ-WIDA 173 + + + ++ +L H + + + LPKG+ TL+ + + + Sbjct: 124 AARTKGKPKSTDAERDIQRLFHHDKTGQPASNVGLRTSGPLPKGIDKHTLKNVEEALVHI 183 Query: 174 HQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + + +++ + S + R+YL +LV+ + + YG GRP RY+ Sbjct: 184 TESESLNAEQVGKRIGTSHSTARRYLEYLVSIGAVKVDVVYGHVGRPERRYK 235 >UniRef50_B2GLU0 Putative CriR family two-component response regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GLU0_KOCRD Length = 218 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 14/224 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLIIDDD VA L+ YV +PGF+ L +A P DL+L+D+Y + Sbjct: 4 LRVLIIDDDFHVAALHVGYVNAVPGFEALPPVHDL-RAVAAAVEEHRP-DLMLVDVYFPQ 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GLD+L + D V+S+A++ AT+ + G + YL+KPF+ + L + Sbjct: 62 GSGLDVLRAV-----DVDAFVLSAASERATVAAAFRRGALAYLLKPFEPEVLKAKLRAYA 116 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD-YEFS 180 + + L+ Q+ +D+ + ++ P G T DA D E + Sbjct: 117 RYRRQLDAPGPLSQSAIDRARRAMTGSDD----APAGTAASA--TESAVADAVADGGEVT 170 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 ++A V ISR + ++YL +V + + YG GRP +RY Sbjct: 171 VMDVARAVGISRATAQRYLSQMVQRGAVQLELRYGSRGRPEHRY 214 >UniRef50_UPI000050FA19 putative two-component response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FA19 Length = 232 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEI----IFNSDTP-IDLILLDIY 58 +L+++D+A+ A + +Y+ +I G+ G A +A I+ D I+L+LLD+ Sbjct: 1 MLVVEDEAVAARAHAKYIDRIDGYHLAGVAKNATQAMAALTGKIYGLDADCINLVLLDMN 60 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFE---E 115 + +GL + + R D+I +++A D ++++L YGV Y+IKPF F+ E Sbjct: 61 LPDGHGLQVCRAIRGHRVDVDIIAVTAARDMQIVQEALSYGVAQYIIKPFTFPVFKSKLE 120 Query: 116 ALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 A + +R Q ++D I ++ KG+ P ++ + + + Sbjct: 121 AYSSYRNSLGGDSTEGEVTQTDVDTAI--AALRTHTVTATAKGV-PDAVQAEVKSVLGDK 177 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 + S E+A + +SRV+ R+YL + + +L YG GRPV Y + A+ Sbjct: 178 PGQ-SAAEVAEGLGVSRVTARRYLEAMADAGMLNRRPRYGAAGRPVLEYTVVAD 230 >UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6T7_VIBME Length = 228 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 113/221 (51%), Gaps = 5/221 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+++I++DD + + + F G A + + A+ II + P LILLD Y+ Sbjct: 4 IDIVIVEDDVNITNIYLDIIQGFSRFTVVGIAESQKIARTII-QAYQP-QLILLDNYLPD 61 Query: 62 ENGLDLLP--VLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 G+DL + + K DV++I+++ D T+++++ G DYL+KP RF++ L Sbjct: 62 GLGIDLYRDILAQKKKRKQDVVLITASDDVNTVQEAMQLGCFDYLLKPISFDRFQQTLQR 121 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + A++ + +Q +D+L + +Q LPKG+ TL + + + + +F Sbjct: 122 YLDLNNAMKAYDNLNQKYIDELFNIQHRKQQ-VSLLPKGIEQITLDKIIRLLSLNNGDKF 180 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP 220 + ++++ +S+ + R+YL + ++ + YG GRP Sbjct: 181 TVEKVSLHTGVSKTTARRYLEYCATHGLIISENEYGKVGRP 221 >UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAH6_GORB4 Length = 237 Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFN---SDTPIDLILLDIY 58 + VLI++D+ ++A+ +R ++ +I GF+ T ++A + + S TP+DL+LLD+ Sbjct: 7 LRVLIVEDEPLIAQAHREFLRRIGGFEVIAAVRTGQEALRVAGSAAASATPVDLVLLDLG 66 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + G+D+ L R D+I I++ + AT++ ++ +GV+ YL+KPF + FEE + Sbjct: 67 LPDARGVDVASALSGLRPDPDIIAITAQRELATVRTAMSHGVLLYLLKPFTFAAFEEKIG 126 Query: 119 GWRQKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRR-LPKGLTPQTLRTLCQWIDAHQD 176 +R+ + AL Q ++D+ + S RR + KG P+T + + + Sbjct: 127 QYRRYRQALSGAGDAVSQRDVDRAV--SELRTTSTRRTVKKGAVPETEDAVGRAVR-DST 183 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + ++A + SRV+ +YL L + +L YG TGRP RY Sbjct: 184 GGLTASDVAGLLGSSRVTAWRYLERLADDGVLDRVTEYGNTGRPQVRY 231 >UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B832_THEAS Length = 225 Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 12/228 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + LI +DD MV+ + R V + F G A +A E I +DL+LLD+ M + Sbjct: 4 VRTLITEDDPMVSFIIGRLVNSLGDFLLVGQAQNGREALEQIRAHK--VDLVLLDLSMPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G +++ + N SDVI+I+S+ A ++L G DY++KPF R +L ++ Sbjct: 62 VDGKEVMLTIRNEDLDSDVIIITSSYRKADAVEALRLGAWDYIVKPFSYDRLRVSLDSYK 121 Query: 122 QK---KMALEKHQYYDQAELDQLIHGSSS-NEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 + +L Q +LD++ + S N + +G T Q + + + ++ Sbjct: 122 DAFRYRASLPAE--LAQEQLDRVFYPESRLNLYSTSGIQRGDTAQRIMDVL----SQEER 175 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 S E+A+++ ISR++ RKY LV+ L HY GRP+ +Y+ Sbjct: 176 PLSAGEIADKIGISRITVRKYCEALVSTGRLIAQNHYQPKGRPIKKYQ 223 >UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodococcus sp. S9 RepID=Q9L4T4_9NOCA Length = 237 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 15/202 (7%) Query: 27 FQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSA 86 ++ A+++ +A+E++ DL L+D+Y+ +G+DL+ L D +V+S+A Sbjct: 45 YEVAAVATSIAQARELLTTQS--FDLALVDVYLPDGSGIDLVREL-----PCDAVVLSAA 97 Query: 87 ADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSS 146 AD AT++ ++ G YLIKPF S + LTG+ + AL++ QA++D + Sbjct: 98 ADQATVRSAMTAGAWTYLIKPFPRSALVDRLTGYLGYRGALDRSDELTQADIDGGLDALR 157 Query: 147 SNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY--EFSTDELANEVNISRVSCRKYLIWLVN 204 P + +T R L +DA + S E+A + ISR + ++YL LV+ Sbjct: 158 PRAAAPLPASQSVT----RDLV--LDAVRGTAEPMSAGEVAAAIGISRATAQRYLATLVS 211 Query: 205 CHILFTSIHYGVTGRPVYRYRI 226 L + YG TGRP Y + Sbjct: 212 KGRLRMQLRYGSTGRPEQEYSL 233 >UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I404_DESAP Length = 224 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 112/226 (49%), Gaps = 4/226 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 ++ +++D D ++ E + ++ +PG + + A E++ +T + L+ + + Sbjct: 2 ILKAVVLDSDPVMLEAHEDVLSLVPGCMVVLSTVSARSALEVLCGDETVLLLLE--LKLS 59 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL+LL + DVIV++ A DA T++ +L G+ DY+IKP++ R + ++ + Sbjct: 60 GADGLELLREIRRQGLPVDVIVVTGAEDAGTLEQALRLGIFDYIIKPYRRHRLKSSVESY 119 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L Q +QA +D + N +LPKGL T+ + ++ S Sbjct: 120 AAMYVTLCGKQAVNQAWVDDHVFRRFPN-LPADKLPKGLHRLTMEQVVLFL-GENIAGVS 177 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 +E+A + SR + R+YL +L + + YG GRP +YR+ Sbjct: 178 AEEVARGIGFSRATARRYLEYLARNGLARPDLEYGSIGRPTTKYRL 223 >UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=Cronobacter RepID=C9Y0H6_CROTZ Length = 260 Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 7/227 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M +VLI++D+ +A L+ V Q P + G A+TL A+ I D L+LLD Y+ Sbjct: 33 MTDVLIVEDENQLAALHAEMVKQHPYLRLVGMAATLADAERQI--RDKRPHLVLLDNYLP 90 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G+ L L VI I++A+D T ++ G DYL+KP R +L + Sbjct: 91 DGKGITLTESLTLKNSACSVIFITAASDMDTCSQAIRNGAFDYLLKPVSWKRLNHSLERF 150 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQ--WIDAHQDYE 178 Q + + DQ +D L + + + P KG+ TL TL Q ++D+ + Sbjct: 151 VQFREQQRVWKIVDQQNVDSLYQLQARSFR-PDSGAKGIEESTL-TLVQRLFVDSREQI- 207 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 FS D++ + +S+ + R+YL V L + YG G P YR Sbjct: 208 FSVDDVVSATGLSKTTTRRYLEHCVESGFLTVEMLYGKIGHPRRLYR 254 >UniRef50_UPI0001C35A14 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35A14 Length = 527 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 12/138 (8%) Query: 5 LIIDDDAMVAELNRRYVAQIP----GFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 LI+DD+ V +R IP GF+C G A+ +E+A + F PIDL+LLDI M Sbjct: 6 LIVDDEYFV---RQRIRLCIPWKEYGFECAGEAANVEQA--LHFLQTVPIDLVLLDISMP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NGL+LL ++ ++ I++S A + ++ Y V +YL+KP +A+TG Sbjct: 61 GPNGLELLRMMKEKNSQAKFIILSGFATFEYARQAIAYNVTNYLLKPINTEELIQAITGI 120 Query: 121 RQKKMALEKHQYYDQAEL 138 R+ L+K+ + Q L Sbjct: 121 RE---TLDKNNHLKQERL 135 >UniRef50_A9WRA3 Transcriptional regulatory protein n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WRA3_RENSM Length = 153 Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 7/134 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLI+DDD VA L+ YV GF + E A + S DL+L+DIY+ Sbjct: 5 LRVLIVDDDFHVARLHVAYVEATAGFSALDPVGSGEAALRAV--SSLRPDLVLIDIYLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGLDLL L D +V+S+A+D ++ ++ G + YLIKPF A L G+ Sbjct: 63 WNGLDLLRNL-----DVDAMVLSAASDVDSVHKAMRRGALGYLIKPFGAEALSAKLRGYA 117 Query: 122 QKKMALEKHQYYDQ 135 + + L + DQ Sbjct: 118 RYRRLLAAGRSLDQ 131 >UniRef50_C7PS97 Two component transcriptional regulator, LytTR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PS97_CHIPD Length = 244 Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 7/112 (6%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 LI+DD+ + E+ RY+ +P Q G +A E F S P+DLI LDI M K NG Sbjct: 6 LIVDDEPLAHEVILRYMEDVPFLQTAGQCYRAMEALE--FLSRQPVDLIFLDIRMPKLNG 63 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 LD L L + +++I+SA + + +S V DYL+KPF+ RF +A Sbjct: 64 LDFLRTLQ----QQPIVIITSAYEEHAL-ESFELEVCDYLLKPFRFDRFLKA 110 >UniRef50_C6CUM4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CUM4_PAESJ Length = 524 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 79/142 (55%), Gaps = 3/142 (2%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI+DDD ++ E + + G+ G A + A ++I D D+IL DIYM Sbjct: 1 MYKVLIVDDDGLIREDVQTMMDWREHGYDIIGEAENGKAALKLIEQHDP--DIILTDIYM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G++L+ + +AR K+ ++V+S+ D A++K+++ YG DY++K L G Sbjct: 59 PVMDGIELIKQVRSARRKAKIVVMSNYDDFASVKEAMKYGASDYVLKYKLDPDVLLDLLG 118 Query: 120 WRQKKMALEKHQYYDQAELDQL 141 +K +A E + QA+L+++ Sbjct: 119 QTKKLLAAEARESEQQAQLEKI 140 >UniRef50_UPI0001C36B1C two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36B1C Length = 505 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 13/155 (8%) Query: 2 INVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +N+LIIDD+ +V E L + GF CG A E+ +I S P DL+LLDI + Sbjct: 1 MNLLIIDDEQIVREGLKTIFPWAEYGFTVCGEAKNGEEGVSLI-RSLNP-DLVLLDIRLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 K +GL++L + +I++S AD K ++ GV YL+KP EE L Sbjct: 59 KLDGLEVLKTVREEGFGGQIIILSGYADFDYAKTAIRLGVCSYLLKPIDE---EELLHAV 115 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRL 155 +Q K LEK ++ E DQ + S EQ R L Sbjct: 116 KQAKETLEK----EKRESDQAL---KSPEQVRREL 143 >UniRef50_Q2S4J5 Response regulator n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4J5_SALRD Length = 248 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 39/233 (16%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + LI+DD+ L + Y+ +I + G T A E I ++T DL+ LD+ M Sbjct: 1 MRALIVDDEPPARSLIQEYLEEIGRIEVTGECGTGRAAIEAI--NETAPDLVFLDVQMP- 57 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 GLD VL D+I S+A D I+ + G VDYL+KP+ +RF+ A+ Sbjct: 58 --GLDGFDVLERIDTLPDII-FSTAYDEYAIE-AFEAGAVDYLLKPYTRARFQTAV---- 109 Query: 122 QKKMALEKHQYYDQAELDQLI----HGSSSNEQDPRRL---------PKGLTPQTLRTLC 168 + ALE+H D A DQL + + P RL P + P +R Sbjct: 110 --ERALERHDRDDDAYADQLATLLQEAKAETDDSPERLYVRHGDKIIP--VDPDDIR--- 162 Query: 169 QWIDAHQDY-EFSTDELA--NEVNISRVSCR---KYLIWLVNCHIL-FTSIHY 214 W++A DY + TDE + + I + R + + HIL F +I Y Sbjct: 163 -WVEAAGDYSKLHTDETTYLSSMGIGALEDRLAPTRFMRVHRSHILAFPAIDY 214 >UniRef50_C0QJP8 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJP8_DESAH Length = 467 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 6/109 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIP-GFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI+VLIIDDD + + Q+ F+ TA +++FN+ DL+LLD+ + Sbjct: 1 MIHVLIIDDDLSICLFLSELLKQMGYAFKIANTAVD----AQLLFNNHA-FDLVLLDLEL 55 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPF 108 NGLDLLP AR +VI+IS D + YG DY+ KPF Sbjct: 56 PDGNGLDLLPQFTGARQSPEVIIISGTGDLRGAALAFKYGAWDYVQKPF 104 >UniRef50_C7PM85 Two component transcriptional regulator, LytTR family n=3 Tax=Sphingobacteriales RepID=C7PM85_CHIPD Length = 246 Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 13/134 (9%) Query: 1 MINVLIIDDDAMVAELNRRYV---AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDI 57 MI +IIDD+ + E+ + Y+ +QI Q CG E K I P D+I LD+ Sbjct: 1 MIKAVIIDDEPLAREIVKEYLQSFSQIQLMQECGDG--FEGLKAI--QQQQP-DIIFLDV 55 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 M K NG ++L ++ + ++ ++A + I+ + +DYL+KPF RF++A+ Sbjct: 56 QMPKINGFEMLELVESLPA----VIFTTAFEEHAIR-AFEVNAIDYLLKPFSKERFDKAV 110 Query: 118 TGWRQKKMALEKHQ 131 + W +++A E Q Sbjct: 111 SKWLDRRVADEMQQ 124 >UniRef50_C5ET72 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET72_9FIRM Length = 539 Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 14/158 (8%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIP----GFQCCGTASTLEKAKEIIFNSDTPIDLILLD 56 M LI+DD+ + + R IP FQ G AS + +A E F ++LILLD Sbjct: 2 MYRFLIVDDEYYIRQHIR---CCIPWEDYDFQYAGEASNVPQAME--FLEHNAVELILLD 56 Query: 57 IYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 I M ++G+DLL +L + + + VI+++ A +++L YGV DYL+KP + A Sbjct: 57 ISMPGQSGMDLLKLL-DEKKRPHVIILTGFATFEYAREALKYGVSDYLLKPIKPETLTAA 115 Query: 117 LTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRR 154 +T K L++ +A L QL S+ EQ+ RR Sbjct: 116 ITSL---KAELDREGNRTKALL-QLEWTSTVIEQETRR 149 >UniRef50_D2QDN3 Two component transcriptional regulator, LytTR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QDN3_9SPHI Length = 256 Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 6/122 (4%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 V+I+DD+ +L +V+Q+P QC + S + + I D DL+ LDI M + Sbjct: 6 RVIILDDEPPARDLIETFVSQLPDLQCVASCSNAIQGLQAI--QDLKPDLLFLDIQMPEM 63 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 GLDL+ + R + I++++A + S + V+DYL+KP RF A+ +R+ Sbjct: 64 TGLDLMKLPLTPRPE---IILTTAYPQYALT-SYEFSVLDYLVKPIAFDRFIRAIVKFRE 119 Query: 123 KK 124 K+ Sbjct: 120 KR 121 >UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K9C1_BACHD Length = 510 Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 93/186 (50%), Gaps = 13/186 (6%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M NVLI+DD+ ++ + + + + GFQ G A+ + A E+I ++ I ++ DI M Sbjct: 1 MCNVLIVDDEKLIRQGIINFFDWEKEGFQIVGEAANGKDALELISKNEPHI--VMTDIVM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP-FQASRFEEALT 118 +G+DL+ + + ++IV+SS + ++ + H GV DY++KP + L+ Sbjct: 59 PVMDGIDLVKRVKRDFPEVEIIVLSSFEEFEYVRSTFHSGVADYILKPRLNEKDLLKTLS 118 Query: 119 GWRQKKMALEKHQYYDQA------ELDQLIHGSSSNEQD---PRRLPKGLTPQTLRTLCQ 169 R K AL K +A + +++++G + QD +R PKG + T + Sbjct: 119 EVRGKIPALAKVDSPSRAVPSISDQFEKILNGHAPLSQDDTGEKRFPKGPYRLAVITPIE 178 Query: 170 WIDAHQ 175 D H+ Sbjct: 179 EQDVHR 184 >UniRef50_C2HBK3 AraC family response regulator n=19 Tax=Enterococcus faecium RepID=C2HBK3_ENTFC Length = 502 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 64/107 (59%), Gaps = 3/107 (2%) Query: 2 INVLIIDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 I V++IDD+ + + ++ + GFQ GT S+ KA + F+ ID+++ D+ M Sbjct: 3 IRVILIDDEQTILDGMKQLINWSEHGFQLIGTFSSPLKALD--FSLAHAIDIVVTDVMMP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 + NG++L +L + ++ ++++SS + +KDS YGV DYL+KP Sbjct: 61 ELNGIELSRLLKQQQPETQILILSSYDEFDMVKDSFKYGVADYLLKP 107 >UniRef50_B5IGK2 Response regulator receiver domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IGK2_9EURY Length = 194 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 15/136 (11%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCC------GTASTLEKAKEIIFNSDTPIDLILL 55 +NV+IIDD+ +AE+ ++Y++ GF S LEK+K + D+ILL Sbjct: 5 LNVVIIDDNKELAEVIKQYLSN-RGFNVKIAENARDAMSILEKSKRV--------DVILL 55 Query: 56 DIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEE 115 D+ ++ +GL++L + + + +I+I+ D T+ +++ G DYL+KPF+ EE Sbjct: 56 DLMLKDVHGLEMLKSIRSHSKQVAIIIITGIKDLNTVIEAMKAGADDYLVKPFRLGELEE 115 Query: 116 ALTGWRQKKMALEKHQ 131 + KK E Q Sbjct: 116 KINENLYKKAMEEPMQ 131 >UniRef50_Q3SW32 Two component transcriptional regulator, LuxR family n=8 Tax=Bradyrhizobiaceae RepID=Q3SW32_NITWN Length = 216 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 93/180 (51%), Gaps = 27/180 (15%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGF--QCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 +++ I+DDD V E + +I G+ Q G S+ +A + +P ++LD+ + Sbjct: 11 VSIFILDDDPSVRE-TLVLLLKIEGYAAQGFGDGSSFLEA----VRNASPA-CVILDLNL 64 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQA----SRFEE 115 E+G D+L L + R + ++VIS AAD + ++ YG +D+L KPF + R Sbjct: 65 PGESGFDVLRRLADERVAAPILVISGAADISMAVAAMKYGALDFLEKPFSSDVIIERVRA 124 Query: 116 ALTGWRQKKMALEKHQYY-----------DQAELDQLIHGSSSNEQDPRRLPKGLTPQTL 164 A+ WR+ + + E+ + ++ L Q+ G +SN++ RRL G++P+T+ Sbjct: 125 AVKVWREARGS-ERDGFANFPGRHLLTCREREVLSQVARG-ASNKEAGRRL--GISPRTV 180 >UniRef50_A0L4H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Proteobacteria RepID=A0L4H3_MAGSM Length = 470 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 5/143 (3%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 ++L+++D +A + + Y+ P +Q A + + TP DL+LLD+ + Sbjct: 9 SLLLVEDSPSMAMVYQEYIKGEPQWQVSHCKEG--HAALVYLHQHTP-DLVLLDLQLPDM 65 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL-TGWR 121 +GL++L +H + + V++I++ T ++ G DYL KPF A+R + R Sbjct: 66 HGLEILKAIHEQQLPTQVVIITAHGSVDTAVEATRLGAFDYLEKPFSANRLLVTMGNALR 125 Query: 122 QKKMALEKHQYYDQAELDQLIHG 144 QK ++LE Y D + D HG Sbjct: 126 QKNLSLEVQAYRDSFDRDHY-HG 147 >UniRef50_A6LST7 Response regulator receiver protein n=4 Tax=Clostridium RepID=A6LST7_CLOB8 Length = 517 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 3/105 (2%) Query: 4 VLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 +L++DD+ ++ + + + GFQ G AS E+A E+I DTP D+I+ D+ M + Sbjct: 7 ILVVDDEFIMRQGITHMIDWEKEGFQIIGQASNGEEALEMI-KKDTP-DIIISDVVMPQI 64 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 NG++L + K +I++SS +D +K S G VDY++KP Sbjct: 65 NGIELAKFVQGKYPKIRIIILSSYSDFEYVKSSFQNGAVDYILKP 109 >UniRef50_A6W0I0 Response regulator receiver modulated CheB methylesterase n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W0I0_MARMS Length = 344 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 9/130 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI+DD + ++ + + PG + GTAS +AK+++ D D+I LD+ M + Sbjct: 6 IKVLIVDDSISIQKVLQEVIESDPGLEVVGTASDAFEAKQMV--KDLSPDVITLDVEMPQ 63 Query: 62 ENGLDLLPVLHNARCKSDVIVIS--SAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGL L VL + + V++IS + A+A T +L G +DY+ KP Q ++ E L Sbjct: 64 VNGLRFLEVLMKIK-PTPVVMISTLTKANADTTLQALELGAIDYIAKP-QLNQKEMFL-- 119 Query: 120 WRQKKMALEK 129 R +KM ++K Sbjct: 120 -RYRKMVIKK 128 >UniRef50_A7VVZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVZ1_9CLOT Length = 531 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DD+ V E L R Q G G A +A II D D++LLDI M Sbjct: 1 MYKLLIVDDEKQVREGLKRLLPWQDYGITIIGEAINGREALGII--EDQRPDIVLLDIQM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 NGL+L +H + IV+S D A +++++ YG VDYL+KP Sbjct: 59 PVMNGLELAKRIHGQYPECKFIVLSGYNDFARVREAMKYGAVDYLLKP 106 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 1 MINVLIIDDDAMV-AELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M NVL++DD+ M+ + L + G QC GTAS ++A E F P+D+++ D+ M Sbjct: 1 MYNVLLVDDEYMILSGLQKIINWDDLGLQCVGTASNGQEALE--FVRKHPVDIVVTDVSM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +++G++ + + +V+S + +K+ + G ++L+KP E L Sbjct: 59 PEQSGIEFVQAAQEEDINFNFVVLSGYQEFEYVKEGIRLGAENFLLKPISKEELNETLRK 118 Query: 120 WRQKKMALEKHQYYD 134 K + ++H + D Sbjct: 119 TVSKLDSEKRHAHTD 133 >UniRef50_Q8A855 Two-component system response regulator n=1 Tax=Bacteroides thetaiotaomicron RepID=Q8A855_BACTN Length = 228 Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 8/126 (6%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MIN +I++D + + + +++++P GT A + F IDL+ LDI M+ Sbjct: 1 MINCIIVEDAPLAVDKLKNFISKVPLLDLAGTFDNGLDAFD--FLQSNTIDLLFLDIQME 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + GL LL LH + +I++S+ + A Y V DYL+KP+ RF +A+ Sbjct: 59 QFTGLQLLQALH---TRPHIIIVSAYGEYAV--QGFEYDVTDYLLKPYSFERFLKAVNKV 113 Query: 121 RQKKMA 126 Q +MA Sbjct: 114 -QTEMA 118 >UniRef50_C6IWZ0 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWZ0_9BACL Length = 253 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 2/108 (1%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M N+LI+DD+A E L+ + GFQ G A+ ++A +I + +D++L DI M Sbjct: 1 MYNLLIVDDEAETREALSSYFPWNEVGFQVVGQANNGQEALRLIAEGER-VDIVLTDIKM 59 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 +G++L L+N R + V+ +S D + +LH+ V++Y++KP Sbjct: 60 PVMSGIELAEQLYNHRRQIKVVFLSGYRDFEYAQQALHFRVINYILKP 107 >UniRef50_C7R8Q4 Two component transcriptional regulator, Fis family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R8Q4_KANKD Length = 192 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 4/135 (2%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 N+L+I+DD + A++ + + Q G C ST+E+A + D D I+LD+Y+ E Sbjct: 4 NLLLIEDDEVFAQVLQNSL-QKRGISCTHV-STIEQASDPELGKD--FDSIVLDLYLDGE 59 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +GL +LP L ++ ++V++ A AT ++ G +YL KP A++ ALT Sbjct: 60 SGLSILPQLRQRYPQASILVLTGYASIATTVQAMKLGTDNYLPKPANATQILNALTQESI 119 Query: 123 KKMALEKHQYYDQAE 137 + + + DQ+E Sbjct: 120 ELPESSQQKVVDQSE 134 >UniRef50_D2QHW7 Two component transcriptional regulator, LytTR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QHW7_9SPHI Length = 237 Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 12/136 (8%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I L++DD + ++ Y+ ++P A+T + + PIDLILLDI M + Sbjct: 5 IRCLVVDDKPLALDILTNYIGKVPFLHLA--AATTNPLDALTRVAQEPIDLILLDIQMPE 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 GL L L++ +S VI+ ++ A+ A D + VVDYL+KP RF A+ + Sbjct: 63 LTGLQFLTALNS---RSRVILTTAYAEYAL--DGFEHDVVDYLLKPISFERFYRAVLKVQ 117 Query: 122 QK-----KMALEKHQY 132 Q+ + LE+ Y Sbjct: 118 QQMRPSPDLPLEQRAY 133 >UniRef50_Q2S053 LytTr DNA-binding domain family n=2 Tax=Rhodothermaceae RepID=Q2S053_SALRD Length = 278 Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI+DD+ + E + P GTA +A + I P DL+ LD+ M Sbjct: 8 IRALIVDDEPLARERLHELLTDAPAVTVAGTAEDGFEAVDAIHEQ-AP-DLVFLDVQMPG 65 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG+D++ + A V V +A D IK + VDYL+KPF RFEEAL R Sbjct: 66 MNGIDVIEEIGTADMP--VTVFVTAYDQYAIK-AFDLAAVDYLLKPFDDERFEEALRRAR 122 Query: 122 QK 123 ++ Sbjct: 123 EQ 124 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 4/108 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 ++N+LI+DD+ +V E R VAQ GF TA E+A +I+ T +D+ILLD+ + Sbjct: 12 LLNLLIVDDERVVRE-GCRDVAQTLGFSTF-TAENAEQAYKIL--DSTSVDVILLDLRLP 67 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPF 108 GL+ L + R ++ VIV++ A + ++ +G DY+ KPF Sbjct: 68 GIGGLEALRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPF 115 >UniRef50_C7GE48 DNA-binding response regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE48_9FIRM Length = 532 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 4/124 (3%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VL++DD+ + + L+ + GF+ GTA +A E F P+DLIL DI M Sbjct: 1 MLKVLLVDDEPFIVQGLSALIDWEKEGFEIVGTAGNGSEAVE--FLKSNPVDLILADIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVI-SSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 NGL+ L + VI S D K+++ + DY++KP Q S+ L+ Sbjct: 59 PVMNGLEFLKYIRETHLSEAFFVILSGYGDFTYAKEAIKWQCTDYILKPIQKSQLLALLS 118 Query: 119 GWRQ 122 +Q Sbjct: 119 KVKQ 122 >UniRef50_C8X529 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C8X529_DESRD Length = 464 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 10/111 (9%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIP---GFQCCGTASTLEKAKEIIFNSDTPIDLILLDI 57 M VLI+DDDA + R V +I C TA E+A + N+ +DL+LLD+ Sbjct: 1 MATVLIVDDDASL-----RVVLEIALERRGHCPLTAENSEQALSAVQNNG--VDLVLLDV 53 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPF 108 + +ENG+DLL ++ VI+I++ AD+ + +++ G DY+ KPF Sbjct: 54 RLGQENGVDLLRLVRQNWADLPVIMITAYADSHSAVEAMKLGASDYIHKPF 104 >UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/response regulator n=3 Tax=Deltaproteobacteria RepID=C0QA67_DESAH Length = 455 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 9/172 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 IN+L++DD+ + L + +A +C TA +A +I D+I+LDI + Sbjct: 11 INILVVDDEKSIRRLLEKELAS--ARRCITTAGNGREA--LIAIRKNVFDVIVLDISLPD 66 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL---- 117 NG++L+ H +I+I+ D +++ G DY+ KPF R E+ + Sbjct: 67 ANGIELMSRFHEEILGVQIILITGYGDVDDAVEAMKTGACDYITKPFDLGRLEQVIEKAY 126 Query: 118 -TGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLC 168 G KK L++ + + I G S+ ++ R L + P ++ L Sbjct: 127 QIGSLHKKKFLKQQGLHKKKIFPDQIVGHSAAMEEVRFLIGKVAPTSVPVLV 178 >UniRef50_Q2FS60 Response regulator receiver domain protein (CheY-like) n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FS60_METHJ Length = 131 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 9/113 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVAQI---PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDI 57 M VLIIDD+ +L+R+ + I G++ GTA + E+ I + DLI +D+ Sbjct: 1 MPTVLIIDDE----DLDRKVLHSILLSAGYEVVGTARSGEEG--IKLSRTLKPDLITIDL 54 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQA 110 M K NG+++L L K++ ++ +SA + ++ YG Y+IKPFQA Sbjct: 55 MMPKMNGMEVLIKLMKENAKTNALICTSAHSDPVVDLAMRYGAKGYIIKPFQA 107 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 19/205 (9%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLII+DDA + EL + Y+ + G+ +AS E+ E+ F S++P D I+LDI + K Sbjct: 5 IKVLIIEDDANIVELIQLYMDK-AGYSYI-SASDGEEGLEL-FYSESP-DCIILDIMLPK 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG ++ + +I+++ + + L+ G DY++KPF + + Sbjct: 61 LNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVL 120 Query: 122 QKKMALEKHQYYDQAELDQLI-----HGSSSNEQDPRRLPK--------GLTPQTLRTLC 168 ++ + E + D+ + D +I + N ++ + PK + P+ + T Sbjct: 121 RRTILSESEK--DRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQ 178 Query: 169 QWIDAHQDYEFSTDELANEVNISRV 193 Q +D YEF+ D +V+I R+ Sbjct: 179 QLLDRVWGYEFNGDPRTVDVHIKRI 203 >UniRef50_C0ZI44 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI44_BREBN Length = 260 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 3/124 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M+ V I+DD+ E R + Q G A + E+A E + ++ D + LDI++Q Sbjct: 1 MLKVFIVDDETPAREELRYLLEQFSEVSVVGEAGSGEEALEAVLQTEP--DAVFLDIHLQ 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+D+ L + VI+ +SA + ++ + VDY++KPF R E+ + Sbjct: 59 DRDGVDVGQELLESMVNPPVIIFASAYEFHAVR-AFEAEAVDYIVKPFSEMRLEKTMNRV 117 Query: 121 RQKK 124 R+ + Sbjct: 118 RKMR 121 >UniRef50_B9YDA4 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDA4_9FIRM Length = 235 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 9/128 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M VLI++DD +A + R Y++Q ++ AS A+E +F + D+ILLD+ + Sbjct: 1 MDRVLIVEDDKEIARIIRYYLSQDNLYEVVSAAS----AEEALFLARDAYDIILLDVGLP 56 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQA----SRFEEA 116 ++G+DL L ++ IS D+ TI +L G DY++KPF +R + Sbjct: 57 DQSGIDLCAQLRQWH-DCPILFISCLDDSNTIISALQQGGDDYIVKPFDNEILHARIQAN 115 Query: 117 LTGWRQKK 124 L WR + Sbjct: 116 LRRWRNDR 123 >UniRef50_UPI0001788E64 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788E64 Length = 539 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 3/136 (2%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+N++I+DD+ ++ + L Q G + TA +AKE+ +DLIL DI M Sbjct: 1 MLNMMIVDDEKLLTDSLKSDVDWQSLGIEAVFTAYNARQAKEVF--EQERVDLILCDIEM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +E+GL+LL N +++ + ++ A+ + +L G DYL+KP ++ + Sbjct: 59 PQESGLELLAWARNNYPQTETVFMTCHAEFKLAQRALKLGSFDYLLKPIPGDELQQVIGK 118 Query: 120 WRQKKMALEKHQYYDQ 135 +K M ++ Q Y + Sbjct: 119 VVEKIMRDQEVQQYSR 134 >UniRef50_C5EPK7 Two-component response regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EPK7_9FIRM Length = 289 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +V+IIDD+ + E + + + G + GTA E+I D D++++DI M Sbjct: 21 MYSVVIIDDNKIAVEAIAKSTDWEKCGCRVAGTAYDGIAGLELI--HDVAPDIVIIDIQM 78 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 NGLD++ + AR + I+IS + + ++ YGV DYL+KP E+AL Sbjct: 79 PGFNGLDVIKKIKGARKDTQFIIISGYSQFEYAQQAIRYGVCDYLLKPIMTEEMEQAL 136 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 4/110 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M +LIIDD+A + E N + + GF C S E A++I+ + IDL LLD+ + Sbjct: 1 MEKILIIDDEAFICE-NVQRILSGEGFLVCAAGSGKE-ARDIVAGEE--IDLALLDLNLG 56 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQA 110 E+G+++L L + VI+I+ + +SL G Y+ KPF+A Sbjct: 57 SEDGIEVLKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKA 106 >UniRef50_Q1NQ80 Sensor protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQ80_9DELT Length = 458 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 +L++DD+ V +L A+ G+Q S + + N+ PIDL+L DI M K + Sbjct: 22 LLVVDDEPFVLQLVS-LQARGLGYQVETANSGPKALLRLRNNNKPPIDLLLTDILMPKMD 80 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 GL LL + + + +VIVIS + T ++ G DYL KPF E ALT Sbjct: 81 GLSLLEQARHLQPELEVIVISGQDEIKTAVAAMRRGARDYLQKPFSIQELEIALT 135 >UniRef50_Q3IJW8 Putative transcriptional regulator sensing dicarboxylates n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IJW8_PSEHT Length = 119 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 111 SRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQW 170 SR E+AL + ++ Q+ +D L+ GS RLPKG+ TL+ + Sbjct: 3 SRLEQALARFEARQQCFSAAVEVTQSMIDTLL-GSKERVSTTTRLPKGVDSLTLKKIITA 61 Query: 171 IDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + H++ F+ ++ + V +SR + R+YL +++ + YG GRP Y+I Sbjct: 62 FNEHKETAFTAQQMGDLVGVSRSTARRYLEYMLEAGQVRADQSYGSIGRPERCYKI 117 >UniRef50_A3W3Q3 PAS:GGDEF protein n=1 Tax=Roseovarius sp. 217 RepID=A3W3Q3_9RHOB Length = 410 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 3/109 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +L +DDDA + EL A+ GF A++ E+A +++ SDTP D +LLDI M Sbjct: 92 MRILAVDDDAFILELIPMISAKA-GFSEVTPAASGEEALKLLTGSDTPFDCLLLDISMPG 150 Query: 62 ENGLDLL-PVLHNARCK-SDVIVISSAADAATIKDSLHYGVVDYLIKPF 108 NG++ V R + + ++++++ D A I D+ G +Y KPF Sbjct: 151 MNGIEFCRRVRQIPRYRQTPIVMLTAMRDVANIGDAYRAGATEYATKPF 199 >UniRef50_B1ZXM6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZXM6_OPITP Length = 454 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 8/123 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTAS--TLEKAKEIIFNSDTPIDLILLDIYM 59 ++ L++DDD + E + + F + LE+ +E F D +LLD+++ Sbjct: 1 MDFLVVDDDQIFREATCLLIEEEGHFAASASNGDVALERVREDKF------DAVLLDLHL 54 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + NGL L+P L R +++ S+ T +LH G VD+L KPF +F L Sbjct: 55 GRHNGLTLIPQLLKVRPNLPIVMFSAQGTVKTAVQALHQGAVDFLEKPFTRDQFHAVLAR 114 Query: 120 WRQ 122 R+ Sbjct: 115 LRR 117 >UniRef50_D2QI00 Two component transcriptional regulator, LytTR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QI00_9SPHI Length = 235 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 9/114 (7%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 L+IDD+A + + Y+ Q+ G +A I F PIDL+ LDI M + NG Sbjct: 8 LLIDDEAAAHYVLQHYIEQVDRLTLVGNCYHALEA--INFLHRQPIDLLFLDINMPQMNG 65 Query: 65 LDLLPVL-HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 L +L L H R VI + A + +S +Y VVDYL+KP + +RF +A+ Sbjct: 66 LQMLETLTHPPR------VILTTAHSEFALESYNYNVVDYLLKPIEFARFLKAV 113 >UniRef50_C0INH2 Two-component system response regulator protein n=1 Tax=uncultured bacterium BLR12 RepID=C0INH2_9BACT Length = 230 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 7/117 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI +I++D+ + + + +V Q F+ GT S +AKE++ +DLI LDI + Sbjct: 1 MIKCIIVEDEVLAQHVIQSHVQQTGKFELVGTCSNALEAKEVL--DKKEVDLIFLDIQLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 +GL+ L L ++V+++A + +S + V+DYL+KP RF +A+ Sbjct: 59 GMSGLNFLRTL----ATPPLVVLTTAYPEYAL-ESYEFNVIDYLLKPISFERFSKAV 110 >UniRef50_Q48GV3 DNA-binding response regulator, LuxR family n=14 Tax=Pseudomonas RepID=Q48GV3_PSE14 Length = 220 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 N+L++DD +++ R VA++PG+ G T + A+ D+ILLDI+M+ Sbjct: 4 NLLLVDDHSLIRAGVRALVAEMPGYAIIG--ETADGAQLSSLAQRLKPDIILLDIWMKSV 61 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +GL+ L L + V+++S D I +L G YL+K A+ E+AL R Sbjct: 62 DGLEALEHLLKVQPHCKVLILSMHTDPDMIMRALDIGARGYLLKDTTATELEQALEALRN 121 Query: 123 KK 124 + Sbjct: 122 NE 123 >UniRef50_C7PR40 Two component transcriptional regulator, LytTR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PR40_CHIPD Length = 248 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 7/117 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MIN +++DD+A EL ++ Q + GTA+ +A +++ T +DLI LDI M Sbjct: 1 MINCIVVDDEAHAIELLTLHIEQTSFLKLAGTATNPVEALQLL--HQTEMDLIFLDIQMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 +G++LL +L+ K VI+ ++ + A D + VVDYL+KP RF +A+ Sbjct: 59 GMSGIELLQLLNE---KYKVILTTAFREYAL--DGYDHNVVDYLLKPIFFPRFLKAV 110 >UniRef50_A1ZK58 Two-component system response regulator protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZK58_9SPHI Length = 245 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 9/114 (7%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGT-ASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 +IIDD+ + EL YV Q+P Q S +E + I +S T IDLI LDI M + + Sbjct: 6 IIIDDEPLARELLEGYVQQVPFLQLEQVFPSAIEASLTI--HSQT-IDLIFLDIEMPRLS 62 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 GLD L N + +I ++ A+ A ++ + VVDYL+KP + +RF +A+ Sbjct: 63 GLDFL---RNLKQPPAIIFTTAYAEYAL--NAFNLNVVDYLLKPIEFNRFFQAV 111 >UniRef50_A5FCU0 Two component transcriptional regulator, LytTR family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FCU0_FLAJ1 Length = 229 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 10/134 (7%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 IN +I+DD+ +L Y +++P S + KA EI+ N +DL+ +DI M + Sbjct: 4 INCIILDDEPFAVKLLADYASKVPRLNVLYADSDVFKAIEILNNES--VDLVFIDIQMPQ 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFE---EALT 118 GL+L+ + + K + I+ S+ + A D + V+DYL+KP +RF E Sbjct: 62 LTGLELMQMFNQ---KHNFIITSAYPEYAL--DVFQFHVIDYLLKPIVFNRFYQSVEKFI 116 Query: 119 GWRQKKMALEKHQY 132 W++ L+ Y Sbjct: 117 RWQETFQNLDSEDY 130 >UniRef50_A5G221 Response regulator receiver protein n=10 Tax=Alphaproteobacteria RepID=A5G221_ACICJ Length = 131 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 13/123 (10%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLE-----KAKEIIFNSDTPIDLILLD 56 + VL++DD + L R G + G +E +A +++ TPI L++ D Sbjct: 7 LTVLVVDDQQTIRSLARV------GLEALGIGEIVEAEDGEEALKLLLTRKTPIHLVISD 60 Query: 57 IYMQKENGLDLLPVL--HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFE 114 M K NGL LL + H K+ I+++ AD + ++ +GV +YLIKPF + Sbjct: 61 YNMPKFNGLSLLRAVRAHGPISKTAFIMLTGRADKQMVMTAVEHGVNNYLIKPFTTESLK 120 Query: 115 EAL 117 E + Sbjct: 121 EKI 123 >UniRef50_C6CWR9 Two component transcriptional regulator, AraC family n=2 Tax=Paenibacillus RepID=C6CWR9_PAESJ Length = 540 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 7/141 (4%) Query: 3 NVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 VL++DD+ + L + ++ G GTA +A E++ DL+L DI M Sbjct: 4 KVLLVDDEPHITRNLEKVIPWEMLGLTVGGTAKNGVEALELL--ESESFDLVLCDIRMPV 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+L+ + +SD+I++S D A + ++ YGV DY++KP + LTG Sbjct: 62 MDGLELVRHIREKGTESDIIMLSGYQDFAYTRAAIQYGVKDYVLKPIPY----DELTGVI 117 Query: 122 QKKMALEKHQYYDQAELDQLI 142 + MA ++ + Q+E Q I Sbjct: 118 ARVMANQRQKKKQQSEEQQKI 138 >UniRef50_A7B0I4 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0I4_RUMGN Length = 573 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 9/124 (7%) Query: 4 VLIIDDDAMVAELNRRYVAQIP----GFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 VL++DD+ +V E A+I GF+ G + A I F + P+D++L DI M Sbjct: 43 VLLVDDEILVREA---ISAKIEWGHLGFELVGDCENGKAA--IEFLKENPVDVVLTDICM 97 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G+ L ++ ++ +I+ S +D K ++ Y V +YL+KP A E LT Sbjct: 98 PYLDGMGLSKYIYENMPQTRIIIFSGYSDFEYAKQAIQYKVAEYLLKPVTAKELTEVLTR 157 Query: 120 WRQK 123 R+K Sbjct: 158 IREK 161 >UniRef50_Q2IIQ2 Two component transcriptional regulator, LuxR family n=3 Tax=Anaeromyxobacter RepID=Q2IIQ2_ANADE Length = 210 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 28/228 (12%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ +L+ DD AM RR + A+ PG G A+T+ +E + P D++LLDI M Sbjct: 1 MLRILLADDHAMFRSGLRRILEAEFPG-ASVGEAATIADVQERL--GAQPWDVLLLDISM 57 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +N L+ LP L + V+V+S D + +L G YL K R E L Sbjct: 58 AGQNSLNALPPLKERHPRLPVVVLSMYGDRQFVIQALRAGASAYLTK----ERAPEELIR 113 Query: 120 WRQKKMALEKHQYYDQAE--LDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 + +A ++ D AE D L G + + + L+P+ L Q A Sbjct: 114 AIRSVLAGRRYVGDDLAEQLADHLAGGGTGSPHER------LSPRELEIFLQLAAAR--- 164 Query: 178 EFSTDELANEVNISRVSCRKY-------LIWLVNCHILFTSIHYGVTG 218 S E+A + +S + Y + N ++ ++ +G+ G Sbjct: 165 --SVSEIAERLQLSVKTVSTYRGRILEKMALRSNAELMQYAVRHGLVG 210 >UniRef50_A7GNF5 Response regulator receiver protein n=98 Tax=cellular organisms RepID=A7GNF5_BACCN Length = 144 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 10/120 (8%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTAS----TLEKAKEIIFNSDTPIDLILLDIY 58 +L++DD + + + + P F+ G A ++K KE+ P D++ LDI Sbjct: 26 KILVVDDAMFMRTMIKNLLKSNPEFEIIGEAENGVEAIQKYKEL-----QP-DIVTLDIT 79 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 M + +GL+ L + + VI+ S+ + D++ G D+++KPFQA R EALT Sbjct: 80 MPEMDGLEALKEIMKMDANAKVIICSAMGQQGMVLDAIKGGAKDFIVKPFQADRVIEALT 139 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPG-FQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +N+LI+DD+ M+ E + V + G ++ G AS E A + F P+DL++ DI M Sbjct: 1 MNILIVDDEPMIREWFQMTVERTGGDYRIAGEASNGEDA--LTFCRANPVDLVVTDIKMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIK 106 NG+DL+ L +V SS ++ ++L +G +Y++K Sbjct: 59 GMNGIDLIKALKEEMPHIRSVVFSSYSEFQFAAEALKFGASEYILK 104 >UniRef50_A1ZFR4 Two-component system response regulator protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZFR4_9SPHI Length = 243 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 7/114 (6%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 L++DD+ + ++ + Y+A++ + G+ +A ++ + +DL+ LDI M + NG Sbjct: 6 LLVDDEPLAHKIIQNYIARLNTLEVVGSCYNAIEALNFLYEHE--VDLMFLDIQMPELNG 63 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 LD+L L ++ VI+ ++ + A +S +GVVDYL+KP RF +A+ Sbjct: 64 LDMLKTLPHS---PKVILTTAYTEFAL--ESYEFGVVDYLLKPIAFPRFLKAVN 112 >UniRef50_Q0JZE8 Response regulator, OmpR-family n=2 Tax=Cupriavidus RepID=Q0JZE8_RALEH Length = 240 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 5/108 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + VL+IDDD +A++ R Y+ P A T ++ + ++ +D D+ LLD+ + Sbjct: 9 LARVLLIDDDLELAQMLREYLE--PDHCTVTLAHTRQQGETLLARND--YDVALLDLMLP 64 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPF 108 NGLDLL LH AR + VI+ ++ D A L G DYL KPF Sbjct: 65 DGNGLDLL-RLHRARSQRPVIMFTAHGDEADRVLGLELGADDYLSKPF 111 >UniRef50_Q39UC6 Response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase n=8 Tax=Desulfuromonadales RepID=Q39UC6_GEOMG Length = 350 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 +L +DD+ M+ +L +++ G++C A + E+A+ ++ N+ IDL +LDI M Sbjct: 4 TILTVDDEEMIRDLMVTALSR-EGYRCF-QAGSAEEARSVLQNNK--IDLAILDIMMPGL 59 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +G D L L ++ V+++++ +D T +H G DY++KPF R + + Sbjct: 60 SGDDFLKELKVLSPETVVLMVTALSDTETAMKCIHLGAYDYILKPFDIDRVLLTIHNALE 119 Query: 123 KKMALEKHQYYDQAELDQ 140 K+ L +++ Y QA L++ Sbjct: 120 KQRLLAENREY-QANLEK 136 >UniRef50_C6D6D4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6D4_PAESJ Length = 521 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 1 MINVLIIDDDAMVAELNRRYV--AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIY 58 M+++LI+DD+ +A + V + F+ C A + +AKEII ID+++ DI Sbjct: 1 MLSLLIVDDEVYIARKIQASVNWEDLGIFEIC-LAHNIRQAKEII--ESRQIDIVICDIE 57 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 M + G+DLL + I ++ ++ K ++ G +DYL+KP Q+ + Sbjct: 58 MPQGTGIDLLAWVREKELPIAFIYLTCHSEFEYTKKAIQLGSLDYLLKPVQSEELRSVVA 117 Query: 119 GWRQKKMALEKHQYYD---QAELDQLIHGSSSN 148 G KK+ EK Y + Q L Q I S SN Sbjct: 118 G-AAKKIDKEKPLYAEQFWQELLQQRISSSPSN 149 >UniRef50_A8UME7 Two-component system response regulator protein n=2 Tax=unclassified Flavobacteriales (miscellaneous) RepID=A8UME7_9FLAO Length = 231 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 9/118 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCC-GTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI + I+DD+ + E+ Y ++I + T + LE I F +DLI LDI M Sbjct: 1 MIKIGIVDDEILAREVLEEYCSKIDNLEVILSTGNPLEF---INFTHQNDLDLIFLDIEM 57 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 + NG+++L + K +++++A + +S YGVVDYL+KP + RF +A+ Sbjct: 58 PELNGMEIL----RSMIKPPKVILTTAYSEYAL-ESYDYGVVDYLLKPIKIERFLKAI 110 >UniRef50_A8UFS0 Two-component system response regulator n=2 Tax=Bacteria RepID=A8UFS0_9FLAO Length = 240 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 9/131 (6%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGT-ASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 N LIIDD+ + EL Y+A++P F+ + +S +E + ++ S IDLI LDI M Sbjct: 4 NCLIIDDEPLARELIETYIAKLPEFELIASYSSAIEASTKL---STKQIDLIFLDIEMPV 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G D N K +VI ++ D A D +DYL+KP RF A + Sbjct: 61 LKGTDF---FKNLTQKPEVIFTTAHRDYAL--DGFELNALDYLLKPIFFERFFSATQKFL 115 Query: 122 QKKMALEKHQY 132 K K + Sbjct: 116 NIKTNESKKHF 126 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 5/147 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M+N+L++DD+ + +L + + G+ GT ++ AK+ I D+I LD+++ Sbjct: 1 MLNILVVDDEKNIQDLMKDILTD-EGY-YVGTTGSITTAKDFI--KKNSYDVIFLDVWLP 56 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 GLDLLP + S V++IS A+ ++ G D+L KP + Sbjct: 57 DGEGLDLLPFIKENSPNSSVVMISGHANIPIAVKAIKEGAFDFLEKPLSTETIMATIEKV 116 Query: 121 RQKKMALEKHQYYDQAELDQL-IHGSS 146 ++ + +Y+ + E Q+ I G+S Sbjct: 117 EKQIKVKQSLEYFKEKEEKQIEIIGNS 143 >UniRef50_UPI0001692E78 DNA-binding response regulator, AraC family protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692E78 Length = 520 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +V ++DD+ + E L + G + G S EKA F D P+DL++ DI M Sbjct: 1 MRSVFLVDDEPFILEGLQTIMEWEKLGLKVVGHDSNGEKA--FAFLKDHPVDLLITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +GL+L+ + K I++S D +K + G+ +Y++KP E L Sbjct: 59 PKMDGLELIKQMKLIHGKMKFIILSGHHDFNYLKQGMKLGIENYILKPINIEELESTLLK 118 Query: 120 WRQK 123 +K Sbjct: 119 INEK 122 >UniRef50_C7PE44 Two component transcriptional regulator, LytTR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PE44_CHIPD Length = 244 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +N +IIDD+ + E YV ++ Q T + + I + P+DLI LDI M K Sbjct: 1 MNCVIIDDEPLAREGLSSYVREVDFLQLVATCTN--PVELIRLLDEHPVDLIFLDIQMPK 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 NG+D L ++ K +++I++A + + + V+DYL+KP RF +A Sbjct: 59 MNGIDFLKIVQ----KPPMVIITTAFPSYAL-EGFQLNVMDYLLKPITFDRFFKA 108 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 4/105 (3%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 ++IIDDD + +L ++Y+ Q GF C +A K + I TP DLI+LD+ + EN Sbjct: 5 IVIIDDDRKIRDLIKQYL-QDQGFDC--SAGEHGKDLDKILQKATP-DLIILDLMLPDEN 60 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPF 108 GLD+ L + K +I++++ D L G DYL KPF Sbjct: 61 GLDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPF 105 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 32 TASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAAT 91 TAS ++A +I D P+D+IL D+ M NG++LL L N R ++ IV+S+ + T Sbjct: 31 TASNGKEAIKIF--EDNPVDIILTDVKMPGMNGIELLRQLKNIRPETPAIVMSAYNETET 88 Query: 92 IKDSLHYGVVDYLIKPFQ 109 + D++ G D++ KPF+ Sbjct: 89 VVDAVKAGAYDFITKPFR 106 >UniRef50_Q4L8V4 Sensory transduction protein lytR n=60 Tax=Bacilli RepID=LYTR_STAHJ Length = 256 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 14/155 (9%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + LI+DD+ + + +I GF A +E+ E + S+T DL+ LDI + Sbjct: 1 MKTLIVDDEPLARNELHYLLNEISGFNVIDEAENIEETLEKLL-SET-YDLVFLDINLMD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 E+G+DL + + +I ++A D +K + +DY++KPF+ R E+A+ Sbjct: 59 ESGIDLAQKIKKMKQPPHII-FATAHDTFAVK-AFELDAIDYILKPFELERIEQAVNKV- 115 Query: 122 QKKMALEKHQYYDQAELDQLIHGSS--SNEQDPRR 154 KHQ + E+D + S S +QD R+ Sbjct: 116 -------KHQISNSNEIDHITSEPSTLSMQQDDRQ 143 >UniRef50_Q1Z5F6 Hypothetical transcriptional regulator n=3 Tax=Photobacterium profundum RepID=Q1Z5F6_PHOPR Length = 133 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M +LII+D+ ++AE+ + + + + ST+E A +++ NS I I LD+ ++ Sbjct: 1 MSKLLIIEDNKVMAEVLAQIIRKCITPKEILKCSTIESAHKVLLNSKDNITGIFLDLNIE 60 Query: 61 KE-NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +GL+LL + N V +I+S +D +K +L DYLIKP ++ + ++ Sbjct: 61 KRLDGLELLAFIRNNHPTIPVSIITSESDTEIVKRTLLCKPQDYLIKPLSVAKVKRSILK 120 Query: 120 WRQKK 124 + + K Sbjct: 121 FEENK 125 >UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2BXH0_LISGR Length = 495 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL+ DD+ M+ R+ + + G++ GTA +A E I P+DLI+LD+ M Sbjct: 2 MYKVLLADDEYMIINGLRKLIPWESLGYEVVGTARNGLEALEFI--RQEPVDLIVLDVNM 59 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 +G++ L + C I++S + +KD+L+ G +YL+KP E L Sbjct: 60 PIMSGIEFLEQAKKSGCLFRSIMLSGYQEFQYVKDTLNLGTENYLLKPVNKVEMIETLN 118 >UniRef50_C7PT73 Two component transcriptional regulator, LytTR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PT73_CHIPD Length = 243 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 7/117 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MIN L++DD+ ++ +++QIP Q + + +A +I+ + IDL+ LDI M Sbjct: 1 MINCLVVDDEQHAIDVLTHHISQIPFLQLVKSTTNAIEALQIV--NMQKIDLVFLDIQMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 + +GLD + KS VI+ ++ ++ A + VVDYL+KP RF +A+ Sbjct: 59 EMSGLDFAKTIQG---KSKVILTTAYSEFAA--EGFDLEVVDYLLKPIPMPRFLKAV 110 >UniRef50_B1I2H5 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I2H5_DESAP Length = 343 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 13/144 (9%) Query: 46 SDTPIDLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLI 105 S DL++LDI M NG+DLL + +++V++I++ A T +L G +DYLI Sbjct: 44 SKNEFDLVILDIRMPDVNGIDLLAEVKKKVPETEVVMITAYASVDTAASALRLGALDYLI 103 Query: 106 KPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTP---- 161 KPF E + +K ++ ++ LD+L +N+ R + K Sbjct: 104 KPFDRKAVMEVV----EKGLSRRAESRKIRSRLDEL---QLANKTLRREIEKAFVNIQRH 156 Query: 162 --QTLRTLCQWIDAHQDYEFSTDE 183 +T+R+L IDA Y S E Sbjct: 157 YLETVRSLVAAIDAKDSYTKSHQE 180 >UniRef50_Q97DT2 Response regulator (CheY-like receiver domain containing) n=1 Tax=Clostridium acetobutylicum RepID=Q97DT2_CLOAB Length = 370 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 4/116 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + V+I+DDD + + ++ +++I + GT L E + N++ +DL LDI + Sbjct: 1 MKVIIVDDDKAMFLILKKMLSKIHNVEVIGTFDRLSTTMEFLENNE--VDLAFLDIKISG 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 +NG+DL + N + + +++ ISS + A DS +DY++KP + E A+ Sbjct: 59 DNGIDLAKQIVNLKKQINIVFISSHKEFAL--DSFDVFPLDYIVKPVSQEKLERAI 112 >UniRef50_UPI0001C363ED two component AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C363ED Length = 487 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 9/118 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIP----GFQCCGTASTLEKAKEIIFNSDTPIDLILLD 56 M +LI+DD+ ++ R IP GF+ G A E+A +I +T D++L D Sbjct: 77 MYQLLIVDDEE---DIRRGMARGIPWKEWGFEVAGQAENGEEAVRMI--GETHPDVVLSD 131 Query: 57 IYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFE 114 I M K +G++L+ LH + +I++S D + ++ V +YL+KP FE Sbjct: 132 IRMPKMDGIELMQYLHENNPEIKIIILSGYNDVEYLNMAIRNQVTEYLLKPTDIDEFE 189 >UniRef50_C6CUI4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CUI4_PAESJ Length = 452 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 23/173 (13%) Query: 2 INVLIIDDDAMVAELNRRYVAQIP----GFQCCGTASTLEKAKEIIFNSDTPIDLILLDI 57 + LI+DD+ V + + +P GF G A +KA E + S PID+++ D+ Sbjct: 1 MKTLIVDDEHFV---RKGLILTVPWKEYGFDIVGEAENGQKALEQL--SAQPIDVLITDL 55 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP-FQASRFEEA 116 M K +G +L+ + ++V++ D + D++H G +DYL+K + + EEA Sbjct: 56 TMPKMSGFELMKEVQQQYPHIWIVVLTCHQDFGYVVDAMHAGAIDYLVKTQIEEGKMEEA 115 Query: 117 LT--------GWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTP 161 L G R ++ A+ +A +LI S P +P +P Sbjct: 116 LARIEKRISDGTRHRQQAV-----VQKASCPELILVPSGANGKPDVIPWPASP 163 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%) Query: 1 MINVLIIDDDAMVAELNRRYVA--QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIY 58 M +LI+DDD + R+ + + C + LE P DLILLD Sbjct: 4 MDKILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAV------GREPFDLILLDYK 57 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFE 114 M +NGL+ L + + K+ +IV+++ T +++ G DYL+KPF + E Sbjct: 58 MPGKNGLETLKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLE 113 >UniRef50_C0QMI5 Two-component response regulator fusion protein (N:response regulator receiver-C:HD-GAF domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QMI5_DESAH Length = 360 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 12/157 (7%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +N+L++DD+ + L ++ V + G+QC A E+A EII S +L++ DI M Sbjct: 12 VNILVVDDEEGIRGLFKK-VLKKEGYQCQ-VAENGEQALEII--SKEKFELVISDIDMPV 67 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQAS----RFEEAL 117 NG+DL + A SD+IV++ + + ++ GV D++ KPF S R + L Sbjct: 68 MNGIDLSKKILAADY-SDIIVMTGQVRSYHYDEIINIGVNDFVTKPFSPSELILRVKRVL 126 Query: 118 TGWRQKKMALEKHQYYDQAELD---QLIHGSSSNEQD 151 + K++A + H+ QA +D +L+ S ++D Sbjct: 127 RERQLKQVAKQSHEELKQAYIDSIHRLVMASEFKDED 163 >UniRef50_B9L6B1 Diguanylate cyclase/phosphodiesterase n=1 Tax=Nautilia profundicola AmH RepID=B9L6B1_NAUPA Length = 655 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 4/128 (3%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 N+L +DD+ ++ +L + ++I F+ AS ++A EI+ TP+D+++ DI M + Sbjct: 14 NLLFVDDNKLITDLGKSLFSKI--FKSILIASNGKEAIEIL--KKTPVDIVITDINMPEI 69 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +G +L + + VI +S+ D T+ ++ + +L+KPF +F + Sbjct: 70 DGFELASHIKKTHPDTVVIFLSAFFDTDTLLKAIDLDIDGFLLKPFDLDKFFSTMKNVLS 129 Query: 123 KKMALEKH 130 K+ L+K Sbjct: 130 HKLELQKQ 137 >UniRef50_B8DRE4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=B8DRE4_DESVM Length = 547 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 4/107 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLIIDDD + E+ R + ++ G S + A+ + D D + LD+ + Sbjct: 1 MANVLIIDDDELFCEMLRSAM-EMEGHASSAAHSLADGAR--LLERDV-FDAVFLDVRLP 56 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 NGLD+LP L + ++I++++A D + ++ G DY+ KP Sbjct: 57 DGNGLDMLPRLRHMASPPEIIIVTAAGDPDGAELAITDGAWDYVEKP 103 >UniRef50_C7GBP3 DNA-bindng response regulator, AraC family n=2 Tax=Roseburia RepID=C7GBP3_9FIRM Length = 534 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 2 INVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + +L++DD+ V E + + + G TA T+++A+EII + +D+I+ DI M Sbjct: 1 MKLLLVDDERYVIESIKKNICWERTGITEIYTAFTMKQAQEII--TAVKMDIIISDIVMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G DL+ + + VI ++S A+ + ++ V+YL+KP + EEAL Sbjct: 59 AATGFDLVQWVREQNFRIQVIFLTSYAEFDYARRAIQLESVEYLLKPIDFEKLEEALK-- 116 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGL 159 + ++ L++ Q +++L S E+D L K + Sbjct: 117 KAEQAVLQEKQ------IEKLTEASEQWEKDRTILQKDI 149 >UniRef50_A6LTH8 Two component transcriptional regulator, LytTR family n=4 Tax=Clostridium RepID=A6LTH8_CLOB8 Length = 247 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 4/116 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI+DD+ + + ++ + + GF+ G E+A +I F P +++ DI M K Sbjct: 3 IKVLIVDDEIGIRTIIKKILDKSGGFEVVGETDNGEEAIDI-FKEHRP-NVVFFDIEMPK 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 NG+D +L + K+ I+I + A A + ++ DYLIKPF+ R + L Sbjct: 61 CNGIDCARILTDIDPKT--IIIFATAHAEYMSEAFQLYAFDYLIKPFKIERVMQTL 114 >UniRef50_Q0EYZ1 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYZ1_9PROT Length = 404 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 7/160 (4%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 +VL++DD+ V E ++ + GF+ TA + A I+ SDTPI L+L D+ M Sbjct: 9 SVLVVDDEPFVLE-TTAFILRRLGFKAIFTAENVPDALAILEGSDTPIGLVLSDLNMPDV 67 Query: 63 NGLDLLPVLHNARCKSDVIVIS-----SAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 +G++LL + + D+++ S + + A ++ + + V+ + KP + L Sbjct: 68 DGVELLRLFAERAYEGDIVLFSGEDSRTLSMAESLAKARNLSVLGSVSKPLKVDEL-TVL 126 Query: 118 TGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPK 157 R K + H D +D+L+ + E +P PK Sbjct: 127 LAKRGKVLRKNGHVTPDLVPVDELVAAIEAEELEPWYQPK 166 >UniRef50_C6HXT4 Response regulator receiver protein n=3 Tax=Leptospirillum RepID=C6HXT4_9BACT Length = 139 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 12/111 (10%) Query: 3 NVLIIDDDA----MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIY 58 ++L+++DD ++AE+ RR+ FQ TAS++ A E F + P+DL+L DI Sbjct: 23 SILVVEDDDVALDLLAEILRRH-----HFQVW-TASSVAAALE--FLEERPVDLVLSDIR 74 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQ 109 M + G+DLL + ++ + V+++S+ D ++L G VD + KPF+ Sbjct: 75 MPERGGMDLLKQIRESQSRIPVVLLSAFGDEHLWVEALSAGAVDLIPKPFK 125 >UniRef50_C6IXK5 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXK5_9BACL Length = 509 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVA--QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIY 58 M NV+I++D + R + ++P FQ TA+ E+A E++ P+DL+L DI Sbjct: 1 MYNVMIVEDSKPILRNIRTLLGSLELP-FQVTATAANGEEALELV--RQQPVDLVLTDIR 57 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 M K +GL + R + I+IS D + +++ V DYL+KP + + E + Sbjct: 58 MPKLDGLAFIEQAKQIRPQLLFILISGYNDFEYTRKAINLQVFDYLLKPVERKQLSEVM 116 >UniRef50_C6IWB5 Predicted protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWB5_9BACL Length = 531 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 1 MINVLIIDDDAMVAELNRRYVAQ--IP----GFQCCGTASTLEKAKEIIFNSDTPIDLIL 54 M V+IIDD E +R Q IP G++ GTAS+ ++A + + D P DL++ Sbjct: 1 MFTVMIIDD-----EPKQRLGLQTLIPWSDLGYEVVGTASSGKEALQSL-EQDVP-DLLV 53 Query: 55 LDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPF---QAS 111 +DI M +GL LL + K +V+S AD + ++ YGV YL+KP + S Sbjct: 54 VDIRMPGMDGLQLLQEIRQRGWKVHAVVLSGYADFEYARRAMQYGVEGYLLKPVNKQEMS 113 Query: 112 RFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGL 159 E L ++ A + Y + + L+ GS ++D +L L Sbjct: 114 ALLEKLHARLVEQQAQQNKTYTREWLVYSLLSGSLDEKEDLDKLSASL 161 >UniRef50_Q1N0N5 Response regulator n=1 Tax=Bermanella marisrubri RepID=Q1N0N5_9GAMM Length = 395 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 6/136 (4%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 VL+IDD+A+V + Y+ GF ++ E FNS P D++L D+ M + Sbjct: 8 VLVIDDEAIVRDSIVTYLED-SGFDVIEASNGTEGIA--CFNSQNP-DIVLCDLRMPNMD 63 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP-FQASRFEEALT-GWR 121 GL +L ++ + + IVIS A A + ++L G DYLIKP E ++ R Sbjct: 64 GLAVLQSINKSNPNTPFIVISGAGVMADVVEALRLGASDYLIKPIIDLEVLEHSIKRNLR 123 Query: 122 QKKMALEKHQYYDQAE 137 Q ++ L+ Y Q E Sbjct: 124 QLRLILQNQNYRQQLE 139 >UniRef50_A4CMC3 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=7 Tax=Bacteroidetes RepID=A4CMC3_9FLAO Length = 441 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 6/116 (5%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFN-SDTPIDLILLDIYMQK 61 N+L++DDD + EL +R++ + G+ S KE +F D+PIDL++ DI M + Sbjct: 7 NILMVDDDVGILELLQRHLQSL-GYHTFKALSV----KEALFILKDSPIDLLITDIQMPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 +GL L+ +VI+ A +++ G DYL KPF ++A+ Sbjct: 62 VDGLQLVRYAEEHYPGMPKLVITGYPSVAGAQETFRSGAADYLTKPFTREELKQAV 117 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 16/152 (10%) Query: 1 MINVLIIDDDAMV----AELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLD 56 M +LI+DD+++V AE RR ++ TA + +KA +I DTP D+++ D Sbjct: 1 MEKILIVDDESIVRNFLAETLRRKNIEVV------TAESGKKALSLI--KDTPFDMVITD 52 Query: 57 IYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 + M G+D+L + V+VI++ +++ G +YLIKPF E Sbjct: 53 MKMPDLTGIDILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAI 112 Query: 117 LTGWRQKKMALEKHQYYDQAELDQLIHGSSSN 148 + ++ ++++QY Q Q+ G S N Sbjct: 113 IEKAKEHLSLVQENQYLRQ----QVSTGDSRN 140 >UniRef50_UPI00017896CE two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017896CE Length = 261 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 107/239 (44%), Gaps = 28/239 (11%) Query: 1 MINVLIIDDDA-MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ L++DD+A ++ L++ + G + G A + +A E+ + P DLIL DI M Sbjct: 1 MLKALLVDDEAPILNNLSKVLPWEEMGMKVVGLARSGMEALEVA-DQYNP-DLILCDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFE----E 115 +GL + + ++++ +++ + ++++ GV DY+ KP E E Sbjct: 59 PVMDGLTFITKIREKGSRAEIFLLTGYQEFEYAREAIKLGVKDYISKPIHYGELEMKIRE 118 Query: 116 ALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 R+K+ K +YY+ L + N + ++ P+ L L ++I+ H Sbjct: 119 IGEEIRKKRA---KEKYYNTVSLID----EAPNPEAVKKTPEQLVSSAL----EYINTHM 167 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLL 234 + +EL+ + IS Y L H+ T + Y + R R++A + L+ Sbjct: 168 GQDLGIEELSEHLGIS----SSYFCLLFKNHVGLTFVEY------LTRQRMEAAKFLLV 216 >UniRef50_C5CE55 Response regulator receiver modulated serine phosphatase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE55_KOSOT Length = 381 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 21/210 (10%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGF---QCCGTASTLEKAKEIIFNSDTPIDLILLDI 57 M VL+IDDD V L + + + G+ +C ++L+KA+ S P DLILLD+ Sbjct: 1 MKRVLVIDDDRTVRML-LKVILKKAGYDVVECANGKTSLKKAE-----SFKP-DLILLDL 53 Query: 58 YMQKENGLDLLPVLHNARCKSDV--IVISSAADAATIKDSLHYGVVDYLIKPFQASRFEE 115 + NGL LL + DV IV++ + D +L G VD++ KPF + EE Sbjct: 54 MLPDINGLQLLETFTSKENLKDVPIIVLTGSTDEENKLTALRSGAVDFITKPFLS---EE 110 Query: 116 ALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 L R ++ + + Q +++L ++ + + L TPQ R WI Sbjct: 111 VLLRVRT-QLRIHSLIHSLQEAVEKLQDDVAAAAKIQKALVPVSTPQGFRDRVNWI---- 165 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNC 205 YE S + + + +++ K LI+L + Sbjct: 166 -YEPSYNVGGDIFDFIKLNDEKELIYLADV 194 >UniRef50_B0NHY9 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NHY9_EUBSP Length = 507 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 74/135 (54%), Gaps = 6/135 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + + +I+D+A + E + + +I ++ G A +K E+I + P DL++LDI M Sbjct: 1 MRIAVIEDEAPIREGMSKILKKINENYELVGKAENGKKGLELI-RKEKP-DLVILDIRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL +L ++ + IV+S+ +D A + ++ G+ +YL+KP + + ++AL Sbjct: 59 DMDGLTMLSIVREEGIECKAIVLSAYSDFAYAQRAIELGIENYLLKPIKIAELKKAL--- 115 Query: 121 RQKKMALEKHQYYDQ 135 Q ++ + K Q +Q Sbjct: 116 EQAEVNISKEQSKEQ 130 >UniRef50_A9WEK6 Sensor protein n=3 Tax=Chloroflexus RepID=A9WEK6_CHLAA Length = 666 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 10/128 (7%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTA---STLEKAKEIIFNSDTPIDLILLDIYM 59 +VL++DDD + +L R+ +A+ GF A + LE ++ +F DL+++D+ M Sbjct: 7 HVLVVDDDPQLRDLCRQTLAR-AGFVVTTAADVTTALEALEQTVF------DLVMVDLIM 59 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGL LL ++ + ++++S AA I ++ G LIKPF+A + Sbjct: 60 PGMNGLQLLELIRSRDISVPILIVSGAASIEQISYAMRLGARGLLIKPFRAQELADMARE 119 Query: 120 WRQKKMAL 127 K+ A+ Sbjct: 120 LVAKRQAI 127 >UniRef50_Q04RB2 Response regulator n=5 Tax=Leptospira RepID=Q04RB2_LEPBJ Length = 308 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 5/121 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +L +DD+ M+ EL + + GTA E+A EI D DLI+ D+ + K Sbjct: 5 MRILFLDDEEMIRELFQEIFGVVHDLTLAGTA---EEALEIC--KDKSFDLIITDVRLPK 59 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+D + L + + IVI+ D +L G VD+ IKPF+ +L + Sbjct: 60 MSGIDFVSKLRDREINTPFIVITGNQDIDISIRALRLGAVDFFIKPFRMDAIRHSLQKFE 119 Query: 122 Q 122 Sbjct: 120 N 120 >UniRef50_C0QLH6 Sensor protein n=2 Tax=Deltaproteobacteria RepID=C0QLH6_DESAH Length = 418 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 6/138 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +L IDD+ + E + ++ GF K +F S P DL+L D+ M + Sbjct: 7 IKILTIDDEPYIRESIKSFLEDF-GFDVIAAEDGRNGLK--LFESQRP-DLVLCDLRMPE 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASR--FEEALTG 119 +GL++L + ++ +IV+S A + ++L G DY+IKP Q F G Sbjct: 63 MDGLEVLEAVTKTSPETPIIVVSGAGNILDTVEALRLGAWDYIIKPIQDMNVLFHAVGKG 122 Query: 120 WRQKKMALEKHQYYDQAE 137 + ++ EK+QY E Sbjct: 123 LERARLIREKNQYQQDLE 140 >UniRef50_Q1NJD5 Sensor protein n=4 Tax=Deltaproteobacteria RepID=Q1NJD5_9DELT Length = 641 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 7/136 (5%) Query: 4 VLIIDDDAMV-AELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 V+++DDDA + L + + A+ + CG+ + L + + L+LLDI + Sbjct: 31 VVVVDDDAAIRGPLRQYFAAEGLAVEECGSGAEL-----LALLEHRRVALVLLDIGLPDY 85 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASR-FEEALTGWR 121 +G+ LLP L V++++ AD D + G DY+ KP + F A Sbjct: 86 DGVALLPRLGEKNPDGAVVMLTGVADLQVALDCMRQGATDYISKPASLEQIFHVASKALE 145 Query: 122 QKKMALEKHQYYDQAE 137 ++++ LE QY ++ E Sbjct: 146 KRRLILENRQYQEELE 161 >UniRef50_UPI0001744C34 response regulator with a HTH DNA-binding domain n=2 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C34 Length = 234 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 3/132 (2%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 V I++D + E + +V +PGF+C A T +A E I D P +++++DI + + Sbjct: 19 VGIVEDHTFMQEGMKVFVESLPGFECAWLAGTAAEAVEKIAQ-DEP-NVLIVDITLPDRS 76 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 GL+L+ LH + V+V+S + + +L G Y++K FE ALT Q Sbjct: 77 GLELIKDLHATHNQMHVLVVSMHEEDLYAERALKAGAKGYIMKNAPHDVFESALTRVSQG 136 Query: 124 KMALEKHQYYDQ 135 +A+ H+ D+ Sbjct: 137 GVAV-SHKMTDR 147 >UniRef50_C1SI10 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI10_9BACT Length = 461 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 5/120 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M+ VL+IDDD + +R +++ + L+ +K D ID I LD + Sbjct: 8 MLKVLLIDDDESICYSIKRSLSK-----SYEVFTALDSSKAYAILKDIEIDFIFLDYQLN 62 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 ENGLD+L + + V ++++ + + D++ YG VD+L KP A + A+ + Sbjct: 63 DENGLDVLKTIRSTNENVPVTLLTAHGTSEILIDAIRYGAVDFLSKPVDACKLTGAIEKY 122 >UniRef50_A6LWZ6 Sensor protein n=2 Tax=Clostridium RepID=A6LWZ6_CLOB8 Length = 423 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 8/121 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQC-CGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +N+LI+DD + R V +I +C TA++ E+A EI+ + ID+ILLDI M Sbjct: 1 MNILIVDDTKFNI-MTAREVIKISEIKCDIITAASGEEAIEIV--NTQNIDIILLDIVMP 57 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQ----ASRFEEA 116 K +G++ L ++ +++ +S D ++ S +G DY+ KP + ASR + A Sbjct: 58 KLSGIETLEIIRRNNKNVIILMFTSLTDKKYLEKSFEFGANDYINKPIEPIEFASRLKSA 117 Query: 117 L 117 + Sbjct: 118 I 118 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 4/107 (3%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 +VL++DD+ + R +A + GF TA + E+ E + + T DL++LDI + + Sbjct: 14 SVLVVDDEQGMRNFLSRALA-LRGF-VVDTAESAEEGAEKL--AATRFDLVILDIALPGK 69 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQ 109 G++ L L A +VI+I++ AD T D+L G D+++KPF+ Sbjct: 70 AGIEWLQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFR 116 >UniRef50_B7AIC8 Sensor protein n=6 Tax=Bacteroidales RepID=B7AIC8_9BACE Length = 793 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 7/109 (6%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 NVL+IDDD M+ + + + + G C ++ E K + DL+L DI M Sbjct: 555 NVLVIDDDTMLLNVIKEMLER-NGMNCTTCVTSKEVVKAM---RGKDYDLLLSDIQMPGT 610 Query: 63 NGLDLLPVLHNARCKSD--VIVISSAADAATIKDS-LHYGVVDYLIKPF 108 NG DLL +L N+ ++ + +++ A KD+ LH G DY+ KPF Sbjct: 611 NGFDLLTLLRNSNIRNSHTIPIVAMTARGDRDKDAFLHAGFTDYIYKPF 659 >UniRef50_B3PDX5 Response regulator n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PDX5_CELJU Length = 225 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 15/191 (7%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL+++DD + E R + PG + +TL +A + + P+DL++ D+ + Sbjct: 16 VRVLLLEDDTPLRERFARILGDWPGGELVAACATLSEALDRLHRQ--PVDLLMADLNLPD 73 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G++ + +L ++D +VIS+ AD T+ ++ G V YL+K + EA+ R Sbjct: 74 GHGIEAIQLLRRLYPEADAMVISALADDETVLGAIEAGAVGYLLKDADSLELVEAIQELR 133 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + L + + GS+ P P+ + LR + + F+ Sbjct: 134 AGRSPISSSIARI---LVRRMGGSTPATPTPELTPR--ETEILRGIAKG--------FTY 180 Query: 182 DELANEVNISR 192 ELA + ISR Sbjct: 181 TELAEWLGISR 191 >UniRef50_A3WHL3 Two-component response regulator n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WHL3_9SPHN Length = 260 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 6/130 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + V I DD+ + R V + + GTAS ++A +I + T DL+LLDI M Sbjct: 4 LRVFIADDEPLALRRVLRSVKSVDDTEIVGTASDGKEALAVI--AATRPDLLLLDIMMPG 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G +LL L + S VI I++ + A D+ GVVDY++KP +R +A+ R Sbjct: 62 LTGFELLEHLDEDQTPS-VIFITAFDNFAV--DAFAQGVVDYILKPLDDTRLAQAIERAR 118 Query: 122 QKKMALEKHQ 131 + +M L+ +Q Sbjct: 119 E-RMELDANQ 127 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 10/135 (7%) Query: 4 VLIIDDDAMVAELNRRYVAQI---PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +L+I+D+A NR +A + G+Q TA T EKA EI+ S TP ++IL D+++ Sbjct: 18 ILVIEDEAA----NREAIALLLGNAGYQVT-TAETGEKALEIL--SKTPFEVILTDLFLP 70 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+++L + ++VI+I+ A + +++ G DY+ KP + + + Sbjct: 71 GVSGIEILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKA 130 Query: 121 RQKKMALEKHQYYDQ 135 +K + ++ Y Q Sbjct: 131 VEKSRLVAENLYLRQ 145 >UniRef50_Q30WB8 Two component transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=Q30WB8_DESDG Length = 475 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 14/140 (10%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M +L+IDDD +V E ++++ +Q +A TLE+ +++ + D++ LD+ + Sbjct: 1 MPRILVIDDDTIVCETIESLLSRLQ-YQSR-SAHTLEQGLQLLAAEE--FDVVFLDVRLP 56 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NGL+ LP + + +VI+++ D + ++ GV DYL+KP T Sbjct: 57 DGNGLEALPRIRSHENSPEVIILTGEGDPDGAELAIQGGVWDYLVKP----------TPI 106 Query: 121 RQKKMALEKHQYYDQAELDQ 140 +Q + L + Y Q +L++ Sbjct: 107 KQTTLTLNRALQYRQEKLNK 126 >UniRef50_Q0QJA1 Putative response regulator n=1 Tax=Pseudoalteromonas sp. BB1 RepID=Q0QJA1_9GAMM Length = 266 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 20/190 (10%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + L++DD+ E R + P G+A+++++A +++ D +DLI LDI M Sbjct: 4 LKTLLVDDEYSATEGLRIRLEAFPEINVIGSAASVDEAIQLLNQFD--VDLIFLDIEMPT 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL---- 117 ++G +L+ C + + V + A + +DYL+KP + +R EA+ Sbjct: 62 KSGFELIKHFQPESCPAVIFVTAFHQHAV---QAFEVRALDYLLKPVKLARLAEAIERVV 118 Query: 118 -TGWRQKKMAL-EKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQ------ 169 T Q+K AL E HQ + D G++ N + + + L Q + Q Sbjct: 119 TTERLQRKTALIEVHQSLIKDATDSQEVGAAGN-SEYKFEAENLVIQDAKNPIQIIPFKD 177 Query: 170 --WIDAHQDY 177 WIDA DY Sbjct: 178 ILWIDAAGDY 187 >UniRef50_C0QLH7 Sensor protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLH7_DESAH Length = 667 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 8/110 (7%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEII--FNSDTPIDLILLDIYM 59 I +L IDD+A + R Y+ C E + I F + P DL+LLD+ M Sbjct: 7 IRILTIDDEAFIRTSIRNYLED-----CEFEVIEAENGRIGIDKFEREKP-DLVLLDLRM 60 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQ 109 + +GL LL +L + +IVIS + + + ++LH G DY++KP Q Sbjct: 61 PEMDGLQLLEILKRLSPDTPLIVISGTGNISAVVEALHLGAWDYILKPIQ 110 >UniRef50_D1PQR0 DNA-binding response regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQR0_9FIRM Length = 535 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 4/111 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V+I+DD+ +A+ + + G++ S ++A E I P+DL++ D+ M Sbjct: 1 MLKVIIVDDEQFIAQGLQALIDWNAAGYEVAAVLSDGQEALEYI--KKLPVDLVITDVMM 58 Query: 60 QKENGLDLLPVLHNAR-CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQ 109 K GL+LL + + +++S ++ + + +L YG +DYL+KP + Sbjct: 59 PKMTGLELLETVRRENLSNAGFVILSGYSEFSYAQKALRYGCIDYLLKPVE 109 >UniRef50_B0SFX2 Response regulator n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SFX2_LEPBA Length = 245 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 10/126 (7%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 +VLII+D+ L YV P + G A + +KA +I ++ DL+ +DI + Sbjct: 7 SVLIIEDEYPARMLMMDYVLNCPELKLAGIAESGDKANTLI--NEKKFDLVFMDINLPVV 64 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRF----EEALT 118 NG+D+L H KS +I++A + ++ DYL+KPF RF E+AL Sbjct: 65 NGMDILRSNH---SKSTFFIITTAYSEHAV-EAFDLDATDYLLKPFSFERFRKSVEKALR 120 Query: 119 GWRQKK 124 ++ K Sbjct: 121 FLQESK 126 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 11/116 (9%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQ---CCGTASTLEKAKEIIFNSDTPIDLILLDI 57 M +LI++DD +AEL + Y+ +I F+ C S L + KE DLI+LD+ Sbjct: 1 MKKILIVEDDLSIAELQKDYL-EISDFEVKICTDGVSGLNEIKE------NKYDLIILDV 53 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRF 113 + K +G D+L ++H+ + ++V + + IK L G DY+ KPF Sbjct: 54 MLPKMDGFDILRIIHDTKDVPVLMVSAKKEEIDKIK-GLSLGADDYITKPFSPGEL 108 >UniRef50_Q1GSC2 Response regulator receiver modulated CheB methylesterase n=1 Tax=Sphingopyxis alaskensis RepID=Q1GSC2_SPHAL Length = 370 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + V+++DD +V + R V PG C + ++ A + + +D+++LDI M Sbjct: 18 VRVMLVDDSLVVRSILERIVETRPGLHICASVASASDALDYLARET--VDVVVLDIEMPG 75 Query: 62 ENGLDLLPVLHNARCKSDVIVISS--AADAATIKDSLHYGVVDYLIKPFQAS---RFEEA 116 NG+D LP + ++ V+++SS ++L G D L KP + S RF E Sbjct: 76 MNGIDALPHILERAAQARVLILSSNCVEGGPAAVEALALGASDTLAKPGRGSFSGRFAEV 135 Query: 117 LT 118 LT Sbjct: 136 LT 137 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 31/185 (16%) Query: 2 INVLIIDDD-------AMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLIL 54 + VLI+DD+ ++A+ R + +I A+ E+A +I + ++L Sbjct: 1 MRVLIVDDEQHVREAIGLLADWERHGITEI------DQAADGEEAVRLI--EEKKPQIVL 52 Query: 55 LDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFE 114 D+ M ++NGL+LL LH + V+VIS D ++ ++ G +DY++KP Sbjct: 53 TDMRMPRKNGLELLTWLHATKPDIKVLVISGYDDFEYVRHTIRSGGIDYILKPVDPDSLN 112 Query: 115 EALTG----WR-----QKKMA---LEKHQ---YYDQAELDQLIHGSSSNEQDPRRLPKGL 159 EAL WR ++ M +E +Q +Y L L++G S E +L K + Sbjct: 113 EALAKAVETWRLEEEKRRHMTNQNIEMNQMTPFYMDRLLSDLVNGYGSRESVVSQLRKRM 172 Query: 160 T-PQT 163 T P+T Sbjct: 173 TLPET 177 >UniRef50_A8UEA9 Two-component system response regulator n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UEA9_9FLAO Length = 234 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 7/119 (5%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 +I DD+ + ++ Y+ +IP + + + EI+ IDL+ LDI M K +G Sbjct: 7 IIADDEPIARQILENYINEIPYLELKASCKNAFEVLEIL--QKEQIDLLFLDINMPKLSG 64 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 L +L L K +VI+ ++ + A + V DYL+KPF RF +A+ +QK Sbjct: 65 LSMLRTLQQ---KPNVIITTAYPEYAL--EGFELSVTDYLLKPFSIERFLQAVMKVQQK 118 >UniRef50_C0EVX4 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=C0EVX4_9FIRM Length = 505 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 30/192 (15%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLE-----KAKEIIFNSDTPIDLILLDIY 58 +LI+DD ++LNR + +I G T + LE +A ++I + I+L+LLDI Sbjct: 13 ILIVDD----SKLNREILKEILG----ETYNYLEAENGNQAIQMI-GENIGINLMLLDIN 63 Query: 59 MQKENGLDLLPVLHNARC--KSDVIVISSAADAATIKDSLHYGVVDYLIKPFQA----SR 112 M + NG ++L ++ ++C ++ VI+ISS T++ + G+ DY+ +PF + R Sbjct: 64 MPQMNGFEVLEIMKRSQCIAETPVIMISSEDAVNTMRKAYELGITDYITRPFDSVIVKKR 123 Query: 113 FEEALTGWRQKK--MALEKHQYYDQAELDQL-------IHGSSSNEQDPRRLP-KGLTPQ 162 + L + +K + + Q Y++ E + + I GS ++E L K T Sbjct: 124 VQNTLGLYMNQKHLINVVYDQVYEKEENNNIMIQIMSNILGSRNSESREHILHIKTATEM 183 Query: 163 TLRTLCQWIDAH 174 LR L + DA+ Sbjct: 184 MLRQLVKVTDAY 195 >UniRef50_A9DKT5 Two-component system regulatory protein n=1 Tax=Kordia algicida OT-1 RepID=A9DKT5_9FLAO Length = 240 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 7/116 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +I++D + + + + + A ++KA E+I NS P ++ LDI M + Sbjct: 4 ITAIIVEDSRLARNELKELLKKHSQIELIAEAENVDKAYELI-NSKQP-QVLFLDINMPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 +NG DLL +L N + + ++A D IK S Y DYL+KP +RF + + Sbjct: 62 KNGFDLLEMLDNV----PLTIFTTAYDEYAIK-SFEYNAFDYLLKPINQTRFSKTI 112 >UniRef50_C6D6B5 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6B5_PAESJ Length = 542 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 3/110 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPG-FQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M N+LI+DD+A+ R+ + G ++ G A +A E++ S P D++L DI M Sbjct: 1 MPNILIVDDEAIFRRGLRKMIESSSGSWEVAGEAKDGYEALEMV-ESLKP-DVLLTDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQ 109 + +GL L+ + K VIV+S + ++ SL +GV DYL+KP + Sbjct: 59 PRMDGLQLIQIAKERFPKLLVIVLSGFDEFTYLQQSLRHGVRDYLMKPVE 108 >UniRef50_B3EF08 Sensor protein n=4 Tax=Chlorobium/Pelodictyon group RepID=B3EF08_CHLL2 Length = 685 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +L++DD+A+ L + ++ G+ TA E++ + IDLILLDI+M Sbjct: 12 ITLLVVDDNAVSLTLTTHIIKKL-GYNAL-TADNGNTCIELL--NTCRIDLILLDIHMPG 67 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFE 114 +NGL++L + + + VI+IS ++D SL G +YL+KP A R + Sbjct: 68 KNGLEVLAYIRDHQFLLPVIMISGSSDIEQAVFSLKMGAYEYLLKPVDADRLQ 120 >UniRef50_A3UEG7 Two-component system regulatory protein n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UEG7_9RHOB Length = 258 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 5/154 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + V DD+ + E R+ +A + CG A E +I ++ P +L+ LDI M K Sbjct: 1 MRVCFADDEPLARERMRKMLALDEDIEICGEAQNGEDMIALI-QAEEP-ELVFLDIEMPK 58 Query: 62 ENGLDLLPVLHNARCKSDV-IVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G D++ L A + + + I + A A + G +D+L KP + +R E AL+ Sbjct: 59 LDGFDVVEALAQATFRDEPPLFIFATAFPAMAAQAYDTGAIDFLTKPIRPARLELALSRA 118 Query: 121 RQKKMALEKHQYYD--QAELDQLIHGSSSNEQDP 152 RQ + E + Q+ L+ L S + Q P Sbjct: 119 RQLLRSREAMSRLEKLQSHLEGLRETRSRSSQGP 152 >UniRef50_A9KRS1 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRS1_CLOPH Length = 548 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 4/133 (3%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VL++DD+ + + L GF G A+ ++A I F T +DLI+ DI M Sbjct: 23 MLRVLVVDDEPYIKQGLAMLINWMAEGFTIIGEAANGKEA--IRFLQKTKVDLIIADIKM 80 Query: 60 QKENGLDLLPVLHNARCK-SDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + NG++LL + + + I++S D + ++ + DYL+KP Q E L Sbjct: 81 PEMNGIELLEYIKKEKLSDASYIILSGYYDFQYARSAIQHNCCDYLLKPVQKDELLEVLR 140 Query: 119 GWRQKKMALEKHQ 131 QK L Q Sbjct: 141 RVSQKSKELNNRQ 153 >UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K690_BACHD Length = 530 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 2/107 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLI+DD+ + E + ++ P G AS +A E +T DL+++DI M Sbjct: 1 MINVLIVDDEQIEREGLKLFLKDRPNIHIVGEASNGRQAIEKAL--ETQPDLMMMDIKMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 +G+ + + +++ I++S+ ++ + YGV +YL+KP Sbjct: 59 GVDGVQAVKEIKQQLPETEFIMVSAFDTFEYAREVMRYGVKEYLLKP 105 >UniRef50_C6CVW8 Two component transcriptional regulator, AraC family n=2 Tax=cellular organisms RepID=C6CVW8_PAESJ Length = 543 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 19/167 (11%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VLI+DD+ + E L R+ GF+ A + A ++ D DLI+ DI M Sbjct: 1 MLRVLIVDDEFEIREGLRNRFPWSTFGFEEVLVADDGDTA--LMLAKDVRPDLIVTDIKM 58 Query: 60 QKENGLDLLPVLHNAR-CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEE--- 115 + +GL+ L + + + IV+S D +K ++ G +DY++KP S E+ Sbjct: 59 NRMSGLEFLNAVQPIKDYHPEAIVVSGYDDFDLVKQAMKTGAIDYILKPINISELEQIVR 118 Query: 116 -ALTGWRQKKMALEKH---QYYDQAEL------DQLIHGSSSNEQDP 152 A+ ++K+ LE+H Q +Q + ++L+ E DP Sbjct: 119 KAVENIQRKR--LEQHNEQQLINQVKFAIPKMREELLREMVEQEHDP 163 >UniRef50_C0FZV1 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FZV1_9FIRM Length = 524 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 3/145 (2%) Query: 2 INVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + +LI+DD+ V E L R+ G ++ +AK I+ ID ++ DI M Sbjct: 1 MKLLIVDDNKYVVEGLKRQLNWSAFGIDEIFGCYSVAQAKSIM--EKEEIDFLISDIEMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +ENG +LL + + ++++S AD K ++ Y YL+KP + S+ EE + Sbjct: 59 EENGFELLSWMQEKGMDTQKLLLTSYADFHYAKAAIDYKCSQYLLKPIETSKLEEVMIEQ 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGS 145 ++ ++ + Q D L H S Sbjct: 119 VDSRVKYQREKRLLQCGNDWLSHQS 143 >UniRef50_D2L834 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L834_9DELT Length = 472 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 4/107 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLIIDDD + + R V+++ A+TL + + SD +D++ LD+ M Sbjct: 1 MGNVLIIDDDQTIRDALARVVSRL--GHRPDMAATLAEGLRLAGGSD--VDVVFLDVRMP 56 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 NGLD + + A +VIV++ D + ++ G DY+ KP Sbjct: 57 DGNGLDAISDIRRAPSTPEVIVLTGWGDPDGAERAMRQGAWDYIEKP 103 >UniRef50_UPI0001788C36 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C36 Length = 254 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI +++++D+ ++ + R + ++ P F+ A+ ++A + + +D+++ DI M Sbjct: 1 MIKLMLVEDEDIIRKGIRDLIGRVAPDFEVVYEAAHGKEA--LTYLERNVVDVLITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 ++ +GL ++ L A + +++IS D K +L +G+ DYL+KP F AL Sbjct: 59 REMDGLQMVEKLRIAGHEMPIVIISGYGDFVYAKKALQFGIADYLLKPIDRKDFTVALDK 118 Query: 120 WR 121 R Sbjct: 119 IR 120 >UniRef50_A8RI10 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RI10_9CLOT Length = 250 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 7/139 (5%) Query: 1 MINVLIIDDDAMV-AELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V+I DD+A + + L + GF+ G+ S A + +S P+DLIL DI M Sbjct: 1 MYQVIIADDEAKIRSGLANLFPWNQLGFEITGSFSNGRDAYDFALSS--PVDLILSDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L L +R K +I S D ++ +L GV DYL+KP + + LT Sbjct: 59 PLMDGLELSERLL-SRKKIKIIFFSGYQDFDYVRKALRNGVFDYLLKPVKYEDLADCLT- 116 Query: 120 WRQKKMALEKHQYYDQAEL 138 R K++ L+ Q D E+ Sbjct: 117 -RVKEL-LDSEQGQDMPEV 133 >UniRef50_A6NQ55 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQ55_9BACE Length = 237 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 2/106 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +L++DD+ L +V PG + CG A + E+ + DL+LLD+ M Sbjct: 4 IRILLVDDNPSARALLAAFVEDTPGLELCGEAGDGWQGLELTGRLEP--DLVLLDLIMPG 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 +G+ L L K VIV+S + A ++ S G YL+KP Sbjct: 62 LDGIGFLEGLEGLPRKPRVIVLSGVSTDAYVQHSCRLGADYYLVKP 107 >UniRef50_A1ZI08 Two-component system response regulator n=3 Tax=Bacteroidetes RepID=A1ZI08_9SPHI Length = 258 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +N +I+DD+ + E + + ++P Q G+ +A + F S +DL+ LDI M + Sbjct: 1 MNCIIVDDEPLAREGMKLNIQELPSLQLIGSFENAMQAND--FLSKNEVDLMFLDIQMPE 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 GLD L L+ K VI + A + V+DYL+KP RF +A+ Sbjct: 59 VTGLDFLKTLN---LKKPPFVILTTAYPQFALEGYALDVIDYLVKPISMDRFIKAVN 112 >UniRef50_A6DTE3 Sensor protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTE3_9BACT Length = 716 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 N+L++DD+ + EL + + +P C S+ + A + F P DLIL+D M + Sbjct: 595 NILVVDDNRINLELVKDCLKGLP--LNCHLKSSGQAALD--FMESNPTDLILMDCQMPQM 650 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 NG + L + + +I S+ A I++ G+ DY++KPF+ F + W + Sbjct: 651 NGFEATDKLRSKGVEIPIIAFSANAFKDNIEECYKVGMNDYIVKPFEKQDFLAKILQWLK 710 Query: 123 KK 124 +K Sbjct: 711 EK 712 >UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZVU5_9FIRM Length = 509 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 8/134 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLI+DD+ + E + +++ G + AS ++A +II + D I L+L DI M Sbjct: 1 MTNVLIVDDEKIEREGLKYLLSREEGERNVFEASNGKQALQIIRSED--IQLVLTDIKMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFE------ 114 +GL+L +I+ S +D ++++ YGV +Y++KP F Sbjct: 59 HMDGLELSRRAKEENPALQIIIFSGYSDFTFAQEAIRYGVTEYILKPVNPEDFHKVIQKA 118 Query: 115 EALTGWRQKKMALE 128 E + R+KK + E Sbjct: 119 EKVIEQRKKKESRE 132 >UniRef50_C4KCC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thauera sp. MZ1T RepID=C4KCC3_THASP Length = 501 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 +VL++DD+ + R +A+ +C S + + + DL++LDI + + Sbjct: 52 SVLVVDDEEGMRNFLERTLAR----RCGMVQSAADAEHAAVLMARLHFDLLVLDIALPGK 107 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASR--------FE 114 +G++ L L DVI+I++ AD T D+L G D+++KPF+ + FE Sbjct: 108 SGIEWLHELRENGYAGDVILITAFADMETAIDALRGGASDFILKPFRVDQILNSIKRCFE 167 Query: 115 EALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQ 150 A G ++ L + AE LI S + EQ Sbjct: 168 RA--GLARENFVLRRELAGLGAEPTGLIGHSPAMEQ 201 >UniRef50_O27792 Sensory transduction regulatory protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O27792_METTH Length = 444 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 12/151 (7%) Query: 3 NVLIIDDDAMVA-ELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 V++++D+++VA ++++R Q G++ T S+ EKA E+ T D+IL+DI ++ Sbjct: 9 KVMVVEDESIVAIDISQRL--QSLGYEVTATVSSGEKAVEM--AEKTRPDIILMDIVLKG 64 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 E G N R K ++ I++ +D T++ + G Y+IKPF+ + Sbjct: 65 EMGGIEAAEEINKRMKVPIVYITAYSDEETLRRAKVTGPFGYIIKPFEDRELHSVI---- 120 Query: 122 QKKMALEKHQYYDQ-AELDQLIHGSSSNEQD 151 ++AL KH+ + AE D+L S+ QD Sbjct: 121 --EVALYKHELERRLAENDELFRAILSSVQD 149 >UniRef50_C7IFK0 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IFK0_9CLOT Length = 545 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 7/150 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVA--QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIY 58 MI VLI+DDD+ +A N + + + GF+ CG AS ++A +I ++T ++++ D+ Sbjct: 1 MIKVLIVDDDS-IARTNIKIMIDWENDGFEICGEASNGQEAINLI--NETIPEIVITDMS 57 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIK-PFQASRFEEAL 117 M +G+ L+ L+ + VI +S D ++ SL G +DY++K EAL Sbjct: 58 MPIIDGIALIEHLNFNFPQIKVIALSGYEDFEYVRRSLKNGALDYILKHSLDGKSLMEAL 117 Query: 118 TGWRQKKMALEKHQYYDQAELDQLIHGSSS 147 R K MA E ++ A L+ I+ S + Sbjct: 118 KAARIKIMA-EIFEHNKNAMLEMQINESRT 146 >UniRef50_C6XVI3 Response regulator receiver n=2 Tax=Sphingobacteriales RepID=C6XVI3_PEDHD Length = 245 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 7/116 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI+DD+ E+ ++Y +P + T + KA + F T IDL+ LDI M Sbjct: 3 IRTLIVDDEPHALEIIKKYAVNVPEIEIVDTCNNALKALQ--FVQHTKIDLVFLDIKMPG 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 G DL+ L K+ ++I + A D +DYL+KP RF A+ Sbjct: 61 LTGTDLIRGL-----KTPPMIIFTTAYQEYAIDGFELNAIDYLLKPVPLERFLRAI 111 >UniRef50_C6XTW9 LytTr DNA-binding region n=3 Tax=Sphingobacteriales RepID=C6XTW9_PEDHD Length = 245 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 9/118 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTAS-TLEKAKEIIFNSDTPIDLILLDIYM 59 MI ++IDD+ + ++ + Y+ P + S E K I + D I LDI M Sbjct: 1 MIRTILIDDEPLARDVVKHYLKLFPEVEVVAECSDGFEGIKAIAHHQP---DFIFLDIQM 57 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 K +G ++L ++ K ++ ++A D IK + VDYL+KP + +RFE+A+ Sbjct: 58 PKISGFEMLELVE----KHPAVIFTTAFDEYAIK-AFEVNAVDYLLKPIEQNRFEQAM 110 >UniRef50_Q12QZ1 Transcriptional regulator, LytR/AlgR family n=1 Tax=Shewanella denitrificans OS217 RepID=Q12QZ1_SHEDO Length = 232 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M++V I++D+ E + ++Q+P G A L A E I N P +++ LDI + Sbjct: 1 MLSVFIVEDEFHAREKLKLQLSQLPDITLLGEAEHLTDAIERI-NQLAP-NVVFLDIELG 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + NG L N K+ VI ++ ++ A + G VDYL+KPF +R +AL+ Sbjct: 59 EHNGFSLFD---NLNIKTQVIFTTAYSEFAL--KAFDNGAVDYLLKPFNLARLSQALS 111 >UniRef50_B8I4I1 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I4I1_CLOCE Length = 525 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VL++DD+ V E L + GF+ CG AS E A EI+ + DLI+ DI M Sbjct: 1 MLKVLLVDDEPYVLEGLKVMLDWEAHGFRICGEASNGEDALEIVRVCNP--DLIMTDISM 58 Query: 60 QKENGLDLLPV-LHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + +GL+L+ + N + + +++S D + K ++ Y +YL+KP + +T Sbjct: 59 PRIDGLELIRLSTENLKSTAKFVILSGYDDFSYAKRAMLYNASNYLLKPLDDVELDSVVT 118 >UniRef50_C6W252 Two component transcriptional regulator, LytTR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W252_DYAFD Length = 245 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 IN LI+DD+ + L YV ++P GT ++ +A+ + IDL+LLDI M Sbjct: 3 INCLIVDDELLARRLLTDYVGKMPELNLVGTCASAMEAQG--YLQKQRIDLLLLDIQMPD 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 G+ LL L N K I+ ++ A+ A L V+DYL+KP RF +A Sbjct: 61 VTGISLLRSLPN---KPVTILTTAYAEYALQGYELF--VLDYLLKPISFERFFQA 110 >UniRef50_C4T682 Acetoacetate metabolism regulatory protein atoC n=2 Tax=Proteobacteria RepID=C4T682_YERIN Length = 287 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 21 VAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVLHNARCKSDV 80 V + G Q G A ++A E+ F P D++L+DI M K +GL+ L V+ R ++ V Sbjct: 5 VFSLDGHQPIGAADG-QQALEL-FKQQAP-DIVLMDIRMPKVSGLEALQVMRQTRQETPV 61 Query: 81 IVISSAADAATIKDSLHYGVVDYLIKPF 108 I++++ A T ++L G DY+IKPF Sbjct: 62 ILMTAYAAVETAVEALRLGAFDYVIKPF 89 >UniRef50_Q1GI23 Two component transcriptional regulator, LuxR family n=35 Tax=Rhodobacterales RepID=Q1GI23_SILST Length = 214 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 17/199 (8%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +L+ DD MV + Y+A G Q T KE+ N P DL+LLD M Sbjct: 11 MRILLADDHDMVRDTISAYLASEGGAQITATTDLPRAMKELEDNG--PFDLVLLDYNMPG 68 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGLD L A V ++S +A T +D+L G + ++ K A A+ Sbjct: 69 MNGLDGLQRALKANGGRGVAILSGSAPTRTAQDALDAGAIGFIPKTMGAQSLLNAVR--- 125 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + Y E L+ +S + P L L+P+ + L + E + Sbjct: 126 ----FMSAGEIYVPVE---LMREEASAPEHP--LLAQLSPREVEVLSGLCRGQSNKEIAR 176 Query: 182 DELANEVNIS---RVSCRK 197 D EV I R CRK Sbjct: 177 DLNLQEVTIKLHVRTLCRK 195 >UniRef50_C6VTD2 Two component transcriptional regulator, LytTR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTD2_DYAFD Length = 261 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 +I+DD+A L +YV ++P + G A + A +I + D+I LDI M + G Sbjct: 10 IIVDDEADARRLIEKYVQKVPFLEIAGFAESATDALYLI--REMKPDIIFLDIEMPEMTG 67 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 +LL +L AR VI AD + + + + DYL+KP RF +A+ Sbjct: 68 FELLKLLPAARPA----VIMITADPSYALEGYEHELTDYLLKPVSFERFLKAV 116 >UniRef50_A8ZVW9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZVW9_DESOH Length = 475 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 13/135 (9%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M ++LI+DD+ MVA L V+Q C TL A+EII D++LLDI + Sbjct: 1 MPHILIVDDEPMVAMLLSETVSQEGWLPVC--VHTLADAREII--GAQSFDVVLLDIQLP 56 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAA--DAATIKDSLHYGVVDYLIKPFQASR----FE 114 +GLD L +V++++ DAA + +L +G DY+ KP + Sbjct: 57 DGSGLDALSFFVGVTAAPEVLIMTGYGHPDAAGL--ALEHGAWDYVEKPINIKKIILSIR 114 Query: 115 EALTGWRQKKMALEK 129 AL +RQ KMA +K Sbjct: 115 RALE-FRQAKMAGKK 128 >UniRef50_A1ZP21 Response regulator of the LytR/AlgR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZP21_9SPHI Length = 263 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 6/122 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI+DD+ + E+ +A+ G Q G AS E+A ++I ++ TP DL+ LDI M Sbjct: 3 IKVLIVDDEPIAREMINILLAEHTGLQVVGEASNGEEALKLI-DTQTP-DLLFLDIQMPG 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+ L +V +A D + + +DYL+KPF RF + + + Sbjct: 61 MTGISLAQKFAGFYGH---LVFVTAYDEYALA-AFELNAIDYLLKPFTKKRFHQTIEKVQ 116 Query: 122 QK 123 K Sbjct: 117 SK 118 >UniRef50_C6LII8 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LII8_9FIRM Length = 502 Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 2/105 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL++DD+ M+ E ++Q P Q G A +A E+ F + P DL+L D+ M Sbjct: 1 MKVLVVDDEIMICEWLEFCISQNPLCQLTGVAHNGAEALEL-FQKEEP-DLVLTDVKMPV 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIK 106 +GL+ L L + ++ V+ +++ ++ I+ +L G +YL+K Sbjct: 59 MDGLEFLHALRSFNSRTKVVFLTAFSEFDLIRQALRDGASEYLLK 103 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax... 351 2e-95 UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae R... 260 2e-68 UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=... 253 3e-66 UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S... 248 1e-64 UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8F... 248 1e-64 UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkalip... 245 8e-64 UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B... 244 2e-63 UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4I... 243 4e-63 UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillu... 242 7e-63 UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=... 242 8e-63 UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A... 241 1e-62 UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Py... 237 2e-61 UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus grou... 237 3e-61 UniRef50_P39486 Probable C4-dicarboxylate response regulator dct... 235 1e-60 UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium ... 234 2e-60 UniRef50_C1SJK3 Response regulator of citrate/malate metabolism ... 233 3e-60 UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacilla... 232 1e-59 UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamur... 231 1e-59 UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Breviba... 230 3e-59 UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AH... 230 3e-59 UniRef50_A4FKM5 Two-component system response regulator n=31 Tax... 229 5e-59 UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=... 229 6e-59 UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=... 229 6e-59 UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacilla... 228 1e-58 UniRef50_C1SFW1 Response regulator of citrate/malate metabolism ... 227 3e-58 UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacill... 226 4e-58 UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dct... 226 6e-58 UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermos... 226 7e-58 UniRef50_C1I809 Two-component system response regulator n=1 Tax=... 225 7e-58 UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcu... 225 8e-58 UniRef50_A4SN90 Two-component system citrate/malate response reg... 225 1e-57 UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillu... 225 1e-57 UniRef50_B7VN90 Response regulator of citrate/malate metabolism ... 224 2e-57 UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=... 223 4e-57 UniRef50_A3JET4 Response regulator of citrate/malate metabolism ... 223 5e-57 UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinom... 223 5e-57 UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscol... 222 7e-57 UniRef50_UPI00019732B8 two-component response regulator yufM n=1... 221 1e-56 UniRef50_C1TQF1 Response regulator of citrate/malate metabolism ... 221 1e-56 UniRef50_C7MRE3 Response regulator of citrate/malate metabolism ... 220 4e-56 UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacil... 218 1e-55 UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfi... 218 1e-55 UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=... 216 4e-55 UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carb... 216 6e-55 UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamur... 216 6e-55 UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX... 215 7e-55 UniRef50_C3JVF9 Response regulator receiver domain protein n=12 ... 215 8e-55 UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinom... 214 2e-54 UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammapro... 214 3e-54 UniRef50_C1TQ18 Response regulator of citrate/malate metabolism ... 213 3e-54 UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=... 213 4e-54 UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillu... 213 4e-54 UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinoco... 213 4e-54 UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella R... 213 5e-54 UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax... 212 7e-54 UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism ... 212 8e-54 UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbel... 211 2e-53 UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax... 209 7e-53 UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=... 208 1e-52 UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clost... 208 1e-52 UniRef50_UPI0001C42291 response regulator receiver/unknown domai... 207 2e-52 UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermos... 207 2e-52 UniRef50_A6W5B7 Two component transcriptional regulator, Fis fam... 207 3e-52 UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Co... 207 3e-52 UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=... 206 4e-52 UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringe... 206 5e-52 UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinoco... 205 7e-52 UniRef50_Q03TV3 Response regulator of citrate/malate metabolism ... 204 2e-51 UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax... 204 2e-51 UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=... 204 2e-51 UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=... 203 4e-51 UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus ... 203 5e-51 UniRef50_B1W256 Putative two-component system response regulator... 203 5e-51 UniRef50_C2IT51 Response regulator of citrate/malate metabolism ... 202 8e-51 UniRef50_C5CAK7 Response regulator of citrate/malate metabolism ... 202 8e-51 UniRef50_B8K774 Response regulator of citrate/malate metabolism ... 201 2e-50 UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillu... 201 2e-50 UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillu... 201 2e-50 UniRef50_A4FB60 Two-component system response regulator n=4 Tax=... 200 3e-50 UniRef50_C4X351 Two-component response regulator for citrate n=2... 200 4e-50 UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya... 200 5e-50 UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanob... 198 1e-49 UniRef50_C9Z825 Putative two component system response regulator... 197 2e-49 UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=... 196 3e-49 UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococ... 196 4e-49 UniRef50_C8NS01 Two component system response regulator n=6 Tax=... 196 7e-49 UniRef50_Q8NU70 Two-component system, response regulators consis... 194 2e-48 UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geoderm... 193 3e-48 UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillu... 193 5e-48 UniRef50_UPI000050FA19 putative two-component response regulator... 193 5e-48 UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=... 192 9e-48 UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacilla... 191 1e-47 UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=... 189 7e-47 UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteob... 189 8e-47 UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammapr... 188 1e-46 UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacilla... 188 1e-46 UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinoc... 188 1e-46 UniRef50_Q0RQX5 C4-dicarboxylate two-component system response r... 186 4e-46 UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bro... 185 1e-45 UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=... 184 2e-45 UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Therman... 183 3e-45 UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus D... 181 1e-44 UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodo... 181 1e-44 UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Therman... 181 2e-44 UniRef50_UPI0001BC2D80 two-component system response regulator n... 180 5e-44 UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bro... 179 6e-44 UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepI... 179 9e-44 UniRef50_B1W048 Putative two-component system response regulator... 178 1e-43 UniRef50_UPI0001C32222 response regulator receiver and unknown d... 178 1e-43 UniRef50_C2ASC2 Response regulator of citrate/malate metabolism ... 178 1e-43 UniRef50_B2GLU0 Putative CriR family two-component response regu... 178 2e-43 UniRef50_C4TWB2 Transcriptional regulatory protein dcuR n=1 Tax=... 169 9e-41 UniRef50_UPI00017896CE two component transcriptional regulator, ... 159 5e-38 UniRef50_UPI00016939E4 two-component response regulator n=1 Tax=... 158 2e-37 UniRef50_C6D416 Two component transcriptional regulator, AraC fa... 147 3e-34 UniRef50_C6CWR9 Two component transcriptional regulator, AraC fa... 146 4e-34 UniRef50_A7VVZ1 Putative uncharacterized protein n=1 Tax=Clostri... 145 9e-34 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 145 1e-33 UniRef50_UPI0001C35A14 two component transcriptional regulator, ... 145 1e-33 UniRef50_C6D7A9 Two component transcriptional regulator, AraC fa... 145 2e-33 UniRef50_A4XHB8 Two component transcriptional regulator, AraC fa... 144 2e-33 UniRef50_UPI0001788B4F two component transcriptional regulator, ... 144 2e-33 UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillu... 144 3e-33 UniRef50_A6LST7 Response regulator receiver protein n=4 Tax=Clos... 144 3e-33 UniRef50_C6CTF9 Two component transcriptional regulator, AraC fa... 143 6e-33 UniRef50_C6IWB5 Predicted protein n=1 Tax=Paenibacillus sp. oral... 142 1e-32 UniRef50_C6IWZ0 Two component transcriptional regulator n=1 Tax=... 141 1e-32 UniRef50_A9KRS1 Two component transcriptional regulator, AraC fa... 141 1e-32 UniRef50_A7VQW7 Putative uncharacterized protein n=1 Tax=Clostri... 141 1e-32 UniRef50_C6J1B9 Two component transcriptional regulator n=1 Tax=... 141 2e-32 UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminoc... 141 2e-32 UniRef50_UPI00017880F1 two component transcriptional regulator, ... 140 4e-32 UniRef50_UPI0001C363ED two component AraC family transcriptional... 140 4e-32 UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. ora... 140 4e-32 UniRef50_UPI0001C36B1C two component transcriptional regulator, ... 140 5e-32 UniRef50_D1PQR0 DNA-binding response regulator, AraC family n=1 ... 139 7e-32 UniRef50_A5ZA57 Putative uncharacterized protein n=1 Tax=Eubacte... 139 8e-32 UniRef50_A7B0I4 Putative uncharacterized protein n=1 Tax=Ruminoc... 139 1e-31 UniRef50_C6CRZ9 Two component transcriptional regulator, AraC fa... 139 1e-31 UniRef50_A6TVR4 Two component transcriptional regulator, LuxR fa... 138 1e-31 UniRef50_C6IYJ7 Predicted protein n=1 Tax=Paenibacillus sp. oral... 138 1e-31 UniRef50_A8RNS9 Putative uncharacterized protein n=1 Tax=Clostri... 138 1e-31 UniRef50_D2LWA9 Two component transcriptional regulator, AraC fa... 138 1e-31 UniRef50_UPI00016C0A10 response regulator receiver protein n=1 T... 138 2e-31 UniRef50_C6J6V9 Response regulator n=2 Tax=Bacillales RepID=C6J6... 138 2e-31 UniRef50_C6CUM4 Two component transcriptional regulator, AraC fa... 138 2e-31 UniRef50_C7GHF1 Putative two-component response regulator n=1 Ta... 138 2e-31 UniRef50_C4ZGL1 Putative uncharacterized protein n=1 Tax=Eubacte... 138 2e-31 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 137 2e-31 UniRef50_C6D6B5 Two component transcriptional regulator, AraC fa... 137 3e-31 UniRef50_A4XID8 Response regulator receiver protein n=4 Tax=Clos... 137 3e-31 UniRef50_UPI00017899D9 two component transcriptional regulator, ... 137 3e-31 UniRef50_C7GGB1 Putative two-component response regulator n=1 Ta... 137 3e-31 UniRef50_C7GE48 DNA-binding response regulator, AraC family n=1 ... 137 3e-31 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 137 3e-31 UniRef50_UPI0001788C36 two component transcriptional regulator, ... 137 3e-31 UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillu... 137 4e-31 UniRef50_C6CUI4 Two component transcriptional regulator, AraC fa... 137 4e-31 UniRef50_B0NX83 Putative uncharacterized protein n=1 Tax=Clostri... 136 5e-31 UniRef50_UPI0001C36936 two component transcriptional regulator, ... 136 5e-31 UniRef50_B0NES4 Putative uncharacterized protein n=2 Tax=Clostri... 136 5e-31 UniRef50_C6IYA1 Response regulator n=1 Tax=Paenibacillus sp. ora... 136 8e-31 UniRef50_C6IXK5 Two component transcriptional regulator n=1 Tax=... 136 9e-31 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 135 1e-30 UniRef50_A1ZP21 Response regulator of the LytR/AlgR family n=1 T... 135 1e-30 UniRef50_C1CP35 Response regulator n=28 Tax=Streptococcus RepID=... 135 1e-30 UniRef50_B0NHY9 Putative uncharacterized protein n=2 Tax=Clostri... 135 1e-30 UniRef50_UPI000178A7F3 two component transcriptional regulator, ... 135 1e-30 UniRef50_A8RM75 Putative uncharacterized protein n=2 Tax=Clostri... 135 1e-30 UniRef50_B8I4I1 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_Q9KDT8 BH1123 protein n=1 Tax=Bacillus halodurans RepID... 135 1e-30 UniRef50_C6LGW7 DNA-binding response regulator n=1 Tax=Bryantell... 135 1e-30 UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/res... 134 2e-30 UniRef50_Q4L8V4 Sensory transduction protein lytR n=60 Tax=Bacil... 134 2e-30 UniRef50_C6CUK8 Two component transcriptional regulator, AraC fa... 134 2e-30 UniRef50_Q39UC6 Response regulator receiver (CheY-like) modulate... 134 2e-30 UniRef50_C5EPK7 Two-component response regulator n=1 Tax=Clostri... 134 3e-30 UniRef50_C0D8D1 Putative uncharacterized protein n=1 Tax=Clostri... 134 3e-30 UniRef50_A1ZD68 LytTr DNA-binding response regulator n=1 Tax=Mic... 134 3e-30 UniRef50_A3W3Q3 PAS:GGDEF protein n=1 Tax=Roseovarius sp. 217 Re... 133 4e-30 UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=... 133 4e-30 UniRef50_A0L4H3 Two component, sigma54 specific, transcriptional... 133 5e-30 Sequences not found previously or not previously below threshold: UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerot... 146 6e-34 UniRef50_C6IZP2 Response regulator n=1 Tax=Paenibacillus sp. ora... 141 2e-32 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 141 2e-32 UniRef50_Q5WIY3 Two-component response regulator n=1 Tax=Bacillu... 141 3e-32 UniRef50_UPI0001C351CB two component AraC family transcriptional... 140 3e-32 UniRef50_C5ENT8 Two component transcriptional regulator n=2 Tax=... 140 3e-32 UniRef50_UPI0001789951 two component transcriptional regulator, ... 140 4e-32 UniRef50_A9QDR4 Two component transcriptional regulator, AraC fa... 139 5e-32 UniRef50_C6LL33 Two-component response regulator n=1 Tax=Bryante... 139 6e-32 UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacteriu... 139 6e-32 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 139 9e-32 UniRef50_C6JCU5 Two component transcriptional regulator n=2 Tax=... 139 1e-31 UniRef50_UPI0001C358FB two component transcriptional regulator, ... 138 1e-31 UniRef50_C7IBY4 Two component transcriptional regulator, AraC fa... 138 1e-31 UniRef50_A3CKH3 Two-component system transcriptional regulator (... 138 2e-31 UniRef50_B8I425 Two component transcriptional regulator, AraC fa... 138 2e-31 UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=... 138 2e-31 UniRef50_A6BJV8 Putative uncharacterized protein n=3 Tax=Lachnos... 138 2e-31 UniRef50_A8RWS2 Putative uncharacterized protein n=1 Tax=Clostri... 138 2e-31 UniRef50_C1F424 Response regulator n=1 Tax=Acidobacterium capsul... 138 2e-31 UniRef50_UPI0001789139 two component transcriptional regulator, ... 138 2e-31 UniRef50_Q3AD13 Response regulator n=1 Tax=Carboxydothermus hydr... 138 2e-31 UniRef50_C8NE16 DNA-binding response regulator n=1 Tax=Granulica... 137 3e-31 UniRef50_Q0SR92 DNA-binding response regulator, AraC family n=10... 137 4e-31 UniRef50_C6D2L5 Two component transcriptional regulator, AraC fa... 137 4e-31 UniRef50_B8FWU4 Two component transcriptional regulator, AraC fa... 136 5e-31 UniRef50_UPI000178A004 two component transcriptional regulator, ... 136 6e-31 UniRef50_D1PQV2 Putative two-component response regulator n=1 Ta... 136 6e-31 UniRef50_UPI00016C0713 response regulator receiver protein n=1 T... 136 6e-31 UniRef50_C0E8C5 Putative uncharacterized protein n=1 Tax=Clostri... 136 6e-31 UniRef50_Q39VW2 Response regulator receiver domain protein (CheY... 136 6e-31 UniRef50_B5YAV6 Two-component response regulator n=2 Tax=Dictyog... 136 7e-31 UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminoc... 136 7e-31 UniRef50_C5EE52 Two-component response regulator n=1 Tax=Clostri... 136 7e-31 UniRef50_A6TMD1 Response regulator receiver protein n=1 Tax=Alka... 136 8e-31 UniRef50_D2LTH2 Two component transcriptional regulator, AraC fa... 136 9e-31 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 136 9e-31 UniRef50_C6JAS9 Predicted protein n=1 Tax=Ruminococcus sp. 5_1_3... 135 1e-30 UniRef50_C6D3P9 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_C6IKI2 Sensor protein n=3 Tax=Bacteroides RepID=C6IKI2_... 135 1e-30 UniRef50_Q9KB26 BH2109 protein n=1 Tax=Bacillus halodurans RepID... 135 1e-30 UniRef50_C6D2K0 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_C4FUN9 Putative uncharacterized protein n=1 Tax=Catonel... 135 1e-30 UniRef50_A8RPD4 Putative uncharacterized protein n=1 Tax=Clostri... 135 1e-30 UniRef50_C6CTB8 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_A7VQN5 Putative uncharacterized protein n=2 Tax=Clostri... 135 2e-30 UniRef50_B5CZ21 Sensor protein n=1 Tax=Bacteroides plebeius DSM ... 134 2e-30 UniRef50_Q893H5 Transcriptional regulatory protein n=1 Tax=Clost... 134 2e-30 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 134 2e-30 UniRef50_A7B1D9 Putative uncharacterized protein n=1 Tax=Ruminoc... 134 2e-30 UniRef50_A9U6E4 Predicted protein (Fragment) n=1 Tax=Physcomitre... 134 2e-30 UniRef50_C1I3A1 Response regulator receiver protein n=1 Tax=Clos... 134 2e-30 UniRef50_C2KZS5 Response regulator n=1 Tax=Oribacterium sinus F0... 134 3e-30 UniRef50_A5Z5R3 Putative uncharacterized protein n=1 Tax=Eubacte... 134 3e-30 UniRef50_C7R6S4 Two component transcriptional regulator, LytTR f... 134 3e-30 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 134 3e-30 UniRef50_C6CZ23 Two component transcriptional regulator, AraC fa... 134 3e-30 UniRef50_C5RGL0 Two component transcriptional regulator, AraC fa... 134 3e-30 UniRef50_C9ABT0 Predicted protein n=3 Tax=Enterococcus casselifl... 133 4e-30 UniRef50_C0B6P7 Putative uncharacterized protein n=1 Tax=Coproco... 133 4e-30 UniRef50_A5ZVI7 Putative uncharacterized protein n=3 Tax=Clostri... 133 4e-30 UniRef50_Q5WBZ0 Two-component response regulator n=1 Tax=Bacillu... 133 4e-30 UniRef50_Q73CG3 DNA-binding response regulator, LuxR family n=10... 133 4e-30 UniRef50_C4G522 Putative uncharacterized protein n=1 Tax=Abiotro... 133 4e-30 UniRef50_Q2BFH4 Putative uncharacterized protein n=1 Tax=Bacillu... 133 4e-30 UniRef50_A4VXN7 Response regulator n=7 Tax=Streptococcus suis Re... 133 4e-30 UniRef50_A4XJ73 Two component transcriptional regulator, AraC fa... 133 4e-30 UniRef50_B0G4U8 Putative uncharacterized protein n=2 Tax=Clostri... 133 4e-30 >UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax=Gammaproteobacteria RepID=DCUR_ECOL6 Length = 239 Score = 351 bits (900), Expect = 2e-95, Method: Composition-based stats. Identities = 238/239 (99%), Positives = 238/239 (99%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ Sbjct: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 KENGLDLLPVLHNARCKSDVIVISSAADA TIKDSLHYGVVDYLIKPFQASRFEEALTGW Sbjct: 61 KENGLDLLPVLHNARCKSDVIVISSAADAVTIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS Sbjct: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ Sbjct: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 >UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae RepID=B1LPU5_ECOSM Length = 241 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 136/239 (56%), Positives = 175/239 (73%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLI+DDD +VA++ RR V Q P F+CCG A +L +AKEII + DLILLD+Y+ Sbjct: 1 MNNVLIVDDDILVADVIRRIVEQTPAFKCCGIALSLGQAKEIISVNKKLADLILLDLYIN 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 K+NGLDLLP LH+ CKSDVIVIS+A D+ATIKDSLHYGV DYLIKPF SR ++LT W Sbjct: 61 KDNGLDLLPFLHSIHCKSDVIVISAADDSATIKDSLHYGVSDYLIKPFHISRLVDSLTRW 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + KK LE + ++Q+ELD L H N + R LPKGL+ TLR +C+WID HQ +F+ Sbjct: 121 KHKKTLLESQKIFNQSELDLLTHKIIPNTEKIRHLPKGLSTDTLRIICRWIDEHQHKKFT 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 +ELA+ + ISR+SCRKY+IWLV+CHIL GVTGRP YRY I+ ++Y +K+Y + Sbjct: 181 LNELASGIKISRISCRKYIIWLVSCHILAFDFSCGVTGRPAYRYWIRHQYYPYIKKYSE 239 >UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=Firmicutes RepID=MALR_BACSU Length = 235 Score = 253 bits (647), Expect = 3e-66, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 152/239 (63%), Gaps = 5/239 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLI++DD MV ELN+RY++QI GFQ G AS+ + A I+ + IDLILLDIYM Sbjct: 1 MINVLIVEDDPMVGELNKRYLSQIDGFQLKGIASSFQSALHIL--GEHHIDLILLDIYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +NGL+LL L DVIVIS+A++ IK +L YG VDYLIKPF+ RF+ AL+ + Sbjct: 59 GKNGLELLTELRAQNEAVDVIVISAASELDVIKKTLRYGAVDYLIKPFEFERFQTALSDY 118 Query: 121 RQKKMALEKHQYYDQAELD-QLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R+K+ H+ Q ELD +L + E+ +LPKGLT TL+ + I + ++ F Sbjct: 119 RRKQKVYSTHRNMSQKELDAELFQKKEATEKV--QLPKGLTKSTLKLIWSSIQSFENESF 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 +T++LA IS+VS RKYL +L + +L + YG GRPV++Y + + + +KQY Sbjct: 177 TTEDLAKHTEISQVSIRKYLKFLEDIQVLNVEMAYGTIGRPVFQYNVNNSNINGIKQYL 235 >UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S242_RHOSR Length = 224 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M VL++DDD MVAE++RR+V + PGF G A T A E + + DL+LLD+Y+ Sbjct: 1 MYEVLVVDDDFMVAEIHRRFVDKTPGFTTVGVARTAADALESVRTAH--PDLVLLDVYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GLD+L L VI+I++A + T+ +LH G DYL+KPF ++ +E L + Sbjct: 59 DMSGLDVLQRLRAEGNAVGVIMITAAREIDTVSRALHGGASDYLVKPFDYTQLQEKLENF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R++ ALE DQ+ +D L G N +P RLPKGL+ +T R + + + E S Sbjct: 119 RRRARALESQSGADQSLIDSLFGGKGKNP-EPSRLPKGLSAETGRLVLDILRSKG--ELS 175 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + E A +SRVS R+YL ++ +L + YG GRPV RYR Sbjct: 176 STECAELAGLSRVSVRRYLEHYLSEGLLEVRLEYGGAGRPVRRYR 220 >UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8FGV9_BACP2 Length = 235 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 147/239 (61%), Gaps = 5/239 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLI++DD MV ELN+RY+ QI GF+ G A++ ++A +++ I L+LLDIYM Sbjct: 1 MINVLIVEDDPMVGELNKRYLTQIEGFELKGIATSFQQALDMLKTEA--IHLVLLDIYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +NGL LL + DVIVIS+A + ++ ++ G VDYLIKPF+ RF+ AL+ + Sbjct: 59 GQNGLALLSEIRKQNHSVDVIVISAANEVDVVQQTMRNGAVDYLIKPFEFERFQSALSEY 118 Query: 121 RQKKMALEKHQYYDQAELD-QLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++K + Q +LD +L H + E+ LPKGLT TL+ + I + F Sbjct: 119 KRKHALYQTMNSISQNDLDAKLFHKKAETEKVL--LPKGLTKSTLKLIWTSIQSFGHQAF 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 +T++LAN IS+VS RKYL +L + ++ + YG GRPV++Y++ + +L++QY Sbjct: 177 TTEDLANHTEISQVSIRKYLKFLEDIEVVDVEMAYGTIGRPVFQYKLSTTNMNLIQQYL 235 >UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TMU0_ALKMQ Length = 235 Score = 245 bits (627), Expect = 8e-64, Method: Composition-based stats. Identities = 87/233 (37%), Positives = 142/233 (60%), Gaps = 4/233 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI+VLI++DD MVA+LN+ YV + GF+ G A+ EKA + I + +DLI+LDI+M Sbjct: 1 MISVLIVEDDQMVAKLNKHYVESVQGFEVVGVANDGEKAWKFI--NHNNVDLIILDIHMA 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 K +GL L + ++DVI +++A ++ TI + L G VDYLIKPF+ R + AL + Sbjct: 59 KVDGLAFLKEMRKKLIQADVIFVTAAQESETIDEGLKLGAVDYLIKPFEYERMKSALENY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 ++ L K Q ++D++ + ++ Q P LPKGL +TL+ + +++ H+D + Sbjct: 119 ERRYHLLRKEHVIKQEDIDKITTKNPTHNQRP--LPKGLHEKTLKKVRRYMQDHKDELLT 176 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 +DE+A E+ SRV+ R+YL +LV+ L I YG GRP +Y+++ + Sbjct: 177 SDEVAAELEFSRVTVRRYLEYLVSIGELTLEIEYGSIGRPSNKYKMRLNSEGV 229 >UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B3M8_9BACI Length = 235 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 99/238 (41%), Positives = 142/238 (59%), Gaps = 3/238 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINV+I++DD MVAE+N+RY+A++ GF+ +A ++++A ++ D I LILLDIYM Sbjct: 1 MINVMIVEDDPMVAEINKRYLAKVEGFRLAASARSVDEAVSLLEKED--IQLILLDIYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 GL+L+ L ++DVI+IS+A D I+ +L GVVDYLIKPF+ RF ALT + Sbjct: 59 GRLGLELVTYLRKNELETDVIIISAAKDMDRIRQALRSGVVDYLIKPFEFERFNAALTAY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q+ EK + Q ELD + LPKGLT TL+ + + + ++ FS Sbjct: 119 EQQSRFAEKREEVTQQELDSHLLR-REEPSVVEELPKGLTKDTLKQVWEAVQELKEGPFS 177 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 TDE+A V +SRVS RKYL +L IL + YG GRPVY++ L+K + Sbjct: 178 TDEMAEAVGVSRVSARKYLNFLKELGILDVKVIYGTIGRPVYQHEYNPYKEHLIKNFL 235 >UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4IPE5_GEOTN Length = 228 Score = 243 bits (621), Expect = 4e-63, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 131/229 (57%), Gaps = 8/229 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLII+DD +AE+NRR+V ++ G++ G A+ E+A+E+ D++LLD+Y Sbjct: 1 MIRVLIIEDDHRIAEINRRFVEKVEGYEVVGIATNAEEAREL--TEVLRPDVLLLDVYFP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+ L + D+I+I++A + T+K +LH GV DY+IKP +RF E L + Sbjct: 59 DMNGISFLKWVRQRFSNIDIIMITAAREIDTLKQALHGGVFDYIIKPIMFNRFAETLNRY 118 Query: 121 RQK----KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + + +++ ++ Q ++D+LI S ++ P LPKG+ P TL + + +D Sbjct: 119 KDYHDKMQQWMKEKEWIGQEDVDELIGRELSAKEQPS-LPKGIQPLTLEKVLVVVKQCRD 177 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + +E+ ++ +SR + R+YL +LV+ + I YG GRP YR Sbjct: 178 -GVTAEEVGQQIGMSRTTARRYLEYLVSTGQVLADIAYGSVGRPERIYR 225 >UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJK0_BACSK Length = 236 Score = 242 bits (619), Expect = 7e-63, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 146/238 (61%), Gaps = 2/238 (0%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLI++DD MVA + + Y+ +PGFQ A +E+AK+ + + T I L+LLD+YM Sbjct: 1 MIQVLIVEDDPMVAAVVKSYLRDVPGFQVAAEAGGVEEAKQHLRENKT-IQLVLLDVYMP 59 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 ENGL LLP L + ++DVI++++A+D +I+ +L +G VDY++KP+Q SRF++AL + Sbjct: 60 GENGLSLLPYLRENKIEADVILMTAASDKESIETALRFGAVDYILKPYQFSRFQKALHAY 119 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + K + DQ +LD+ + + + LPKGLT +TL+ + + I FS Sbjct: 120 QSRYNFFRKEETTDQKQLDETFF-EKKHTLEKQTLPKGLTKETLQEVWEAIRQVGQDSFS 178 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 T+++A +SRVS +KYL +L +L YG GRP++ YRI ++ +K Y Sbjct: 179 TEDIALHARLSRVSVKKYLTFLKELDVLQLQPTYGSIGRPIHIYRIDKDNVRKIKPYL 236 >UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42273 Length = 237 Score = 242 bits (618), Expect = 8e-63, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 5/229 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFN-SDTPIDLILLDIYM 59 M NVLI++DD VAE+ + +V ++ GF G T + + +FN ++T DLILLD+Y+ Sbjct: 5 MYNVLIVEDDFRVAEITKGFVEKVDGFNVIGLCKTGAETESFLFNLNETTPDLILLDVYI 64 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGLDL + + D+++I++A + TI+++L G+ DY++KP +RF+ L Sbjct: 65 PDVNGLDLFWKIRENLHQVDIVMITAAKEVYTIEEALRGGIFDYIVKPVDFNRFKRTLDT 124 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQ----DPRRLPKGLTPQTLRTLCQWIDAHQ 175 ++ ++ +L + +Q E+D L S ++ + +LPKG+ TL + + H Sbjct: 125 FKDQRGSLSSKEKLNQEEIDLLTRAQSPSQSAALVEQEQLPKGIDSITLDKVKNILSLHS 184 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 D + L V ISR + R+YL +LV+ + YG GRP Y Sbjct: 185 DTGITASSLGEAVGISRSTARRYLEYLVSISEARAELSYGDVGRPERLY 233 >UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A5D2L3_PELTS Length = 225 Score = 241 bits (616), Expect = 1e-62, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD MV E+NR ++ +PGF+ G A + +A E+I + DL+LLDIY+ Sbjct: 4 IGVLIVEDDPMVVEVNRGFINAVPGFKVVGVARSGREAIEMI--KELSPDLVLLDIYLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL L + +DVI++++A DA TI+ YG +DY+IKPF+ +R + AL + Sbjct: 62 VDGLTTLQEIRRIGLPTDVIIVTAAQDAETIQRGFRYGSIDYIIKPFKFTRLKAALNSYA 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + +QAE+D L G +Q +PKGL TL+ + ++ + S Sbjct: 122 TLYNRFRRQAQMNQAEIDSLTLG--RGQQVDEGVPKGLNEVTLKQVFLYLL-KEGVALSA 178 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +E+A V ++RV+ R+YL ++ + + YG GRPV RYRI+ Sbjct: 179 EEVAEGVGLARVTARRYLDYMEKSGKVVLELQYGSVGRPVNRYRIK 224 >UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1R1_9BACT Length = 248 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 128/231 (55%), Gaps = 3/231 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI +I++DD MVA++NRRY+ Q + A I D DLI+LD+YM Sbjct: 1 MIKTIIVEDDPMVAQINRRYLDTANDIQVAAVFDNGKDALAYI--EDEEPDLIILDVYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NGL+LL + A +SDVI++++A D ++++L G+VDYL+KPF+ RF EA+ + Sbjct: 59 VMNGLELLREIRKADIQSDVIMVTAANDVKNVEEALRLGIVDYLVKPFEYERFMEAIEKY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDP-RRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R+K L+ +Q +D L+ + Q P R L KGL +TL + +D + Sbjct: 119 RKKAHVLKDASTLNQDAIDALVSVGAPQPQAPARDLKKGLQQRTLDMIRSHLDKMKGETC 178 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEH 230 + D LA V +S+V+ R+YL +L + +S+ Y GRP +Y I+ + Sbjct: 179 TCDTLAGVVGLSKVTVRRYLNYLAEIGEIDSSVDYETGGRPCIKYFIRPDS 229 >UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus group RepID=Q73DS2_BACC1 Length = 235 Score = 237 bits (604), Expect = 3e-61, Method: Composition-based stats. Identities = 95/226 (42%), Positives = 141/226 (62%), Gaps = 3/226 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLI++DD MVA LN Y+ Q GF+ ++++ A E++ S +DL+LLDI+M Sbjct: 1 MIKVLIVEDDPMVAMLNTHYLEQAGGFELVQAVNSVKSAIEVLEAS--RVDLVLLDIFMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +E G +LL + N + D+++IS+ D +IK +L YGVVDYLIKPF RF+EALT + Sbjct: 59 EETGFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTIY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDP-RRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R+K +++ Q Q+ELD LI E + LPKGLT QT++ + + I++ F Sbjct: 119 REKLTFMKEQQKISQSELDSLILQKEKREPTVMKELPKGLTKQTMQLIWKKIESLNGRAF 178 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +TDE+A V +SRVS RKY+++L +L + Y GRPV + R Sbjct: 179 TTDEMAQLVGVSRVSIRKYVMFLTEIGVLENEMVYQHVGRPVSKLR 224 >UniRef50_P39486 Probable C4-dicarboxylate response regulator dctR n=8 Tax=Bacillaceae RepID=DCTR_BACME Length = 228 Score = 235 bits (599), Expect = 1e-60, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 136/225 (60%), Gaps = 5/225 (2%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VL+I+DD MV E+NR+++ Q+ GF AS + ++I DL ++D+YM + Sbjct: 7 TVLLIEDDPMVQEVNRQFIEQVEGFTVIAAASNGLEGVQLI--KQHQPDLTIIDMYMPSQ 64 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +GL L + K+DVI +++A+D T++ L YG VDY++KPF+ R ++AL +R Sbjct: 65 DGLTTLQQIRANGYKTDVIAVTAASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQYRS 124 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 ++ + + ++ Q+ELD ++ + D LPKGL TLR + Q++ + Q++ S + Sbjct: 125 FQVKISQKEHITQSELDSMLFQQFEEKADL--LPKGLNAVTLRRIQQYL-SEQNHPISAE 181 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 E+A+ V I+RV+ R+YL +L + L S+ YG GRP+ RY ++ Sbjct: 182 EVADGVGIARVTARRYLEFLEQENELKLSVEYGRVGRPINRYMLK 226 >UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium RepID=A6M0I4_CLOB8 Length = 231 Score = 234 bits (597), Expect = 2e-60, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 138/232 (59%), Gaps = 6/232 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI +I++DD MV ++N +++ +I GF + L +AKE + +DLILLDI++ Sbjct: 1 MIKTMIVEDDPMVRQINSKFLKKIEGFSLEKAVANLSEAKEFLMQKQ--VDLILLDIFLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 ENG+DLL L SDVI+I++ +KD+ YGVVDYLIKPF RF E+L + Sbjct: 59 NENGIDLLKWLRQNEILSDVILITADKSVERVKDAFRYGVVDYLIKPFTFERFNESLNIF 118 Query: 121 RQKKMALEKHQYYDQAELDQLI----HGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 R++ + E Q +Q++LD+ I + ++N + L KGL T ++ ++ ++ Sbjct: 119 RERLNSFENSQTMEQSDLDKFILSNKNKKTNNSETKPNLEKGLNKYTYNSIANELNNTKE 178 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 F+T++L+ ++ I++V+ RKYL ++ L I YG GRP+Y+Y+I+ Sbjct: 179 EYFTTEDLSEKLGIAKVTVRKYLDYMSKQGELEKIIEYGKIGRPLYKYKIKG 230 >UniRef50_C1SJK3 Response regulator of citrate/malate metabolism n=5 Tax=Bacteria RepID=C1SJK3_9BACT Length = 228 Score = 233 bits (596), Expect = 3e-60, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 127/229 (55%), Gaps = 3/229 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLI++DD +A L+RR+ ++ GF G A+ L A E+ +L+LLD+Y Sbjct: 1 MIKVLIVEDDVNIANLHRRFTEKVEGFDVVGIANGLADAFEM--TEILKPELVLLDMYFP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + +G+D L + ++ +D+I+I++A D + +++++ G DY++KP RF ++L + Sbjct: 59 EGSGMDFLWKIRSSGILTDIILITAARDVSVLQEAVRGGAFDYIVKPVVFERFNKSLNRF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + + +Q ++D L+ S + + +PKG+ P TL+ + + + S Sbjct: 119 KDYLKEIRCEKTLEQNDIDSLLDRHSEAVINTQNMPKGIDPITLKKIISVFE-KKHEAMS 177 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 +DE+ + SR + R+YL +L IL I YG GRP R+++ ++ Sbjct: 178 SDEVGRYIGASRNTARRYLEYLTGAGILTVDIDYGTVGRPEKRFKLVSD 226 >UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacillales RepID=C0ZHY7_BREBN Length = 231 Score = 232 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 8/229 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLII+DD +AE+NRR+V ++ G++ G A+ ++AK+ + DL+LLDIY Sbjct: 1 MIRVLIIEDDLRIAEVNRRFVEKVEGYEVIGIATNGQEAKDQM--EILQPDLVLLDIYFP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GLD L ++ +DVI++++A + + +++ YGV D++ KP +R ++ L + Sbjct: 59 DMDGLDFLSIIKEQFPTTDVIMLTAAKEVDAVVEAIRYGVFDFITKPLIFARLQQTLRNY 118 Query: 121 RQKKMALEKHQ----YYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 ++ + + + Q ++D+LI + + + KG+ TL + ++ Q Sbjct: 119 QEFRQKVSDWKKDTDQISQTQIDELIARTGQKKTPETKAVKGIDQITLDKISGFL--MQT 176 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 E +TD ++ E ISR + R+YL +LV + YGV GRP Y+ Sbjct: 177 QEATTDLVSKETGISRSTARRYLEYLVAKGDAIADLSYGVVGRPERVYK 225 >UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XBI6_NAKMY Length = 228 Score = 231 bits (590), Expect = 1e-59, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 VL++DDD MVA ++ R++ GF+ G AST A + ++ DL+LLD+++ + Sbjct: 10 VLVVDDDFMVARIHCRFLQTQNGFRVDGVASTGIDALAKL--AELSPDLMLLDVHLPDMS 67 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 GL++L + + DVIV+++ D ++++ G + YL+KPF+ + E L +R+ Sbjct: 68 GLEVLRIARQEHPRVDVIVVTAERDLDAVREAWQGGAMSYLVKPFEYTALAEKLAHFRKA 127 Query: 124 KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 + L+ + DQ +DQL S + LPKGL+ +T + + + A D S E Sbjct: 128 RALLDTAE-VDQGAIDQLFGVGGSTTRPRADLPKGLSRETADLVRRSLSA--DEALSATE 184 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 A V ISRVS R+YL +L + + YG TGRP YR+ Sbjct: 185 CAERVGISRVSARRYLEYLEQTGVAQVRLKYGKTGRPERLYRLV 228 >UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7C4_BREBN Length = 239 Score = 230 bits (587), Expect = 3e-59, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 8/234 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I V+I++DD + A + ++ +++ GFQ TA+T ++A E++ D++LLDIY+ Sbjct: 6 ITVMIVEDDEIAARIYEQFTSKLEGFQIIATATTGKQALEMLHV--VTPDVLLLDIYLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG+DLL + DV++I++A D T+++++ G Y+IKP +F L + Sbjct: 64 MNGIDLLREVRKHFRGIDVVMITAANDVETVREAIRGGAYSYIIKPIMIDKFMSTLEQYA 123 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDP-----RRLPKGLTPQTLRTLCQWIDAHQD 176 + L++H DQ +D+L ++ LPKG+ TL+ + + Sbjct: 124 NTRHQLQQHTTIDQTAVDKLFTKAAHTPATKTVGTVTSLPKGIDKLTLKLIRDKM-QETT 182 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEH 230 + D+LA +S + R+YL +LV+ + + YG GRP +YR + Sbjct: 183 QSMNADDLAALAGMSHSTVRRYLEFLVSINEVTVETFYGTVGRPERKYRWVPQK 236 >UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AHC9_BACMY Length = 231 Score = 230 bits (587), Expect = 3e-59, Method: Composition-based stats. Identities = 97/227 (42%), Positives = 144/227 (63%), Gaps = 3/227 (1%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 +I++DD MVA LN+ Y+ Q+ GF+ A+++++A EI+ ++ ID ILLDI+M + G Sbjct: 1 MIVEDDPMVAMLNKHYLEQVGGFELVHIANSVKEAVEIL--KESSIDFILLDIFMPVDTG 58 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 +LL + N + DVI+IS+ D +IK +L YGVVDYLIKPF RF+EALT +R+K Sbjct: 59 FELLLHIRNQEKEIDVIMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTAYREKF 118 Query: 125 MALEKHQYYDQAELDQLIHGSSSNEQ-DPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 + +++ Q Q+ELD LI E + LPKGLT QTL+ + + I++ F+TDE Sbjct: 119 IFMKEQQKISQSELDTLILQKEKVETYVNKELPKGLTRQTLQLIWKQIESLHGQAFTTDE 178 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEH 230 +A V ISRVS RKY+++L +L + Y GRPV + R E+ Sbjct: 179 MAQLVGISRVSIRKYVMFLTEIGVLENEMVYQHVGRPVSKLRCIDEN 225 >UniRef50_A4FKM5 Two-component system response regulator n=31 Tax=Actinobacteria (class) RepID=A4FKM5_SACEN Length = 231 Score = 229 bits (585), Expect = 5e-59, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 14/235 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL++DDD MVA+++ YV+++ GF+ GTA T A + + +L+LLDIY+ Sbjct: 1 MIKVLVVDDDFMVAKIHSGYVSRVTGFEVVGTAHTGADALRAV--GELRPELVLLDIYLP 58 Query: 61 KENGLDLLPVLH----NARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 +GL +L L DVIVI++A D T++ ++ G + YLIKPF + Sbjct: 59 DMDGLAVLRELRAGTARPSADPDVIVITAARDLDTVRGAIRGGALHYLIKPFSYEALRDQ 118 Query: 117 LTGWRQKKMALEK---HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDA 173 L +R +L Q ++D+L + P PKG++ +T R + + Sbjct: 119 LENFRSLHRSLSAMPGDAPAAQQDVDRLFGSRARGSSAP---PKGVSSETARIVEDILRE 175 Query: 174 H--QDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + + S E A+ +SRVS RKYL V + YG TGRP RYR Sbjct: 176 RSAEGGDLSATECADATALSRVSARKYLEHFVMTGRAEVRLRYGGTGRPERRYRW 230 >UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIR5_9FIRM Length = 221 Score = 229 bits (585), Expect = 6e-59, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M V+I++DD M+ ELNRRY + F T S +A + + P DL++LD YM Sbjct: 1 MYTVVIVEDDPMITELNRRYAEKDGRFTVAQTFSQPRRALDWL--RHNPADLVILDFYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + NGL+ L + A +SDVI+I++A DAAT++ GVVDYL+KPF RF AL + Sbjct: 59 QMNGLEFLRAVRAAGVESDVIMITAANDAATVEALTRLGVVDYLVKPFAYERFCRALDAF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 +++ A+ DQ LD L+H P LPKG+ QT + + + ++ Sbjct: 119 CRRRSAM--RGSLDQTALDNLLHAVPP---APATLPKGMQAQTQERVLACMRDDPGHAYT 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 +E+A +S V+ R+Y+ +L + ++YG GRP YR+ Sbjct: 174 CEEIAAASGLSVVTVRRYMGYLAQQGQVTGDMNYGTGGRPCLVYRL 219 >UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=Vibrionaceae RepID=A7JZZ2_VIBSE Length = 228 Score = 229 bits (584), Expect = 6e-59, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 V+II+DD +AEL+ +Y++Q+ G + G A+T +A+ + DL+L+D+Y+ Sbjct: 6 RVMIIEDDLAIAELHHKYLSQLAGLEVVGIATTRMEAE--MQLDILKPDLLLMDVYLPDG 63 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 GL++L L DVI+I++A D T++ ++ GVVDYL+KP R + AL + Sbjct: 64 TGLEILNTLRANNQTCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLDAALKKYVS 123 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 ++ L+ + DQ +D+++ ++ + P RLPKG+ TL + + + D Sbjct: 124 QRQQLDIAESLDQNLVDKMLQSHANQDNLPNRLPKGIDGVTLDKIRELF--PNGSVLTAD 181 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 E ++ SR + R+YL +L++ L ++YG GRP Y+ Sbjct: 182 EAGEKIGASRTTARRYLEYLISTGELEADLNYGSVGRPERCYK 224 >UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacillales RepID=C0Z7K6_BREBN Length = 253 Score = 228 bits (581), Expect = 1e-58, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 130/235 (55%), Gaps = 10/235 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD MV E+N++++ ++PGF G A+ +++ + DL+++DI+M Sbjct: 8 IRVLIMEDDPMVQEINKQFIERVPGFVVVGIAANGADGLKLV--KELTPDLVIIDIFMPI 65 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 ++G+ L L A+ DVIV+++A D TI+ L G +DY+IKPFQ R +++L +R Sbjct: 66 QDGVKALMELRAAKHAVDVIVVTAAKDKTTIQSMLRNGAMDYIIKPFQFERIKQSLENYR 125 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRL------PKGLTPQTLRTLCQWIDAHQ 175 + + ++ Q E+DQL+ S ++ PKGL T+ + + I+ + Sbjct: 126 EFRRRIDWEGTASQDEVDQLLFRKSREKEQADATPAREVLPKGLHAVTMEQIMRQIE-KE 184 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY-RIQAE 229 S D++A V I+RV+ R+YL +L + + YG GRP RY R+ + Sbjct: 185 SQPLSADDVAERVGIARVTARRYLDYLEKSGSVRMDVSYGGVGRPTNRYVRVTPQ 239 >UniRef50_C1SFW1 Response regulator of citrate/malate metabolism n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFW1_9BACT Length = 231 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 2/229 (0%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLII+D+ + +L+R ++ ++ GF+ G A +L++A+E I DLILLD++ Sbjct: 4 IQVLIIEDNERILKLHRLFLEKVDGFELVGIAKSLKEAEETIAVLQ--PDLILLDLFFPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ L + DVI+I++ D +++D+L G DY++KP RF+E+L ++ Sbjct: 62 GHGMSFLKHMRMQDINFDVILITADKDVNSLQDALRNGAFDYIVKPVVFDRFKESLEKYK 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 K + Q +Q + D + + E +PKG+ P TL+ + + + + Sbjct: 122 TFKTGISAKQTIEQKDADSIFMSAQQVEYTDDDVPKGIDPLTLKKVKDTLVEYGERGICA 181 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEH 230 E + SR++ R+YL +LV+ + I YG GRP +Y + E Sbjct: 182 QETGKLIGASRITARRYLEYLVSGGFISADITYGSVGRPERKYFYKPEK 230 >UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacillales RepID=C0ZEJ9_BREBN Length = 239 Score = 226 bits (577), Expect = 4e-58, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 VLI++DD + ++N+R+V++I GF+ TA+ AKE++ S T L+LLD+Y+ Sbjct: 6 VLIVEDDMRIIDINKRFVSKIEGFEVIATATNGTDAKELL--SCTRPQLVLLDVYLPDML 63 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 G +L+ + + DVI+I++A + ++++L GV DY++KP RF E L +R+ Sbjct: 64 GTELVWHIRQHYREVDVIMITAAKEMEMVQEALRGGVYDYIVKPLVFERFRERLESYRKH 123 Query: 124 KMALEKHQYYDQAELDQLIHGSSSNEQDPR-RLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 + + DQ +DQ++ ++ PKG+ TL + + I D S + Sbjct: 124 VIRTREAVEVDQEVIDQMLTRRLVAPKNRDVLAPKGIDLLTLEKVIEAIRQTGDKGVSAE 183 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 E+ E+ SR + R+YL +LV + YG GRP +YR Sbjct: 184 EIGREIGTSRTTARRYLEYLVLEKKARADLIYGTVGRPERKYRYLPS 230 >UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dctR n=1 Tax=Bacillus halodurans RepID=DCTR_BACHD Length = 230 Score = 226 bits (576), Expect = 6e-58, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 4/226 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL+I+DD MV E+NR +V ++ GF GT +T E+ ++ + DLILLDI+M K Sbjct: 7 IRVLLIEDDPMVQEVNRMFVEKLSGFTIVGTTATGEEG--MVKTRELQPDLILLDIFMPK 64 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 ++GL + + D+I +++A D TIK L YGV+DYL+KPF R + ALT + Sbjct: 65 QDGLSFIKQIREQYIDVDIIAVTAANDTKTIKTLLRYGVMDYLVKPFTFERLKAALTQYE 124 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + ++K Q LD++I + + LPKGL TL+ + + ++ D S Sbjct: 125 EMFRKMQKEAELSQDSLDEMI-KQKQAQANMDDLPKGLHAHTLQQVIERLEEL-DEPKSA 182 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +E+ +V ++RV+ R+YL +L + + + YG GRP+ Y+++ Sbjct: 183 EEIGRDVGLARVTVRRYLNYLESVGQVEMDLTYGSIGRPIQTYKLK 228 >UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPK0_9FIRM Length = 233 Score = 226 bits (576), Expect = 7e-58, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 5/229 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+V+I++DD MV EL+R+Y++++ GF G A E+ II + L ++DIYM Sbjct: 5 ISVVILEDDPMVLELHRQYLSKVKGFNLTGWARDGEEGVNII--AKLQPHLAIVDIYMPG 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GLD+L + +DVI++++A D +++ + YG VDY+IKPF +RF++AL +R Sbjct: 63 ISGLDVLKHIRRQEWNTDVILVTAAHDTDSVQQGIQYGAVDYVIKPFTFTRFKKALETYR 122 Query: 122 QKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L K Q Q ++D ++ + D LPKGL TL + + + Y F+ Sbjct: 123 RYFCKLRTKEQLISQKDID-MLKNNIVGLSDKSMLPKGLQQTTLDLIVELLRQKNGY-FT 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 E+A+ + ISRV+ ++YL +L IL + YG GRP+ ++ + E Sbjct: 181 VKEIASALGISRVTVKRYLNYLQEGGILKGMLSYGPVGRPLQKFLVNKE 229 >UniRef50_C1I809 Two-component system response regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I809_9CLOT Length = 232 Score = 225 bits (575), Expect = 7e-58, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 128/231 (55%), Gaps = 6/231 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I V I++DD MV E+N R++ ++ GF G AS++E+AK I + DL+LLDI++ Sbjct: 4 IKVFIVEDDPMVKEINTRFLEKLEGFIVVGDASSIEEAK--IKITKEKADLVLLDIFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+DLL + + D I+I++ +++ ++ YG +DYLIKPF+ RF+EAL+ +R Sbjct: 62 GKGIDLLKWIRSKEINIDTILITADKCKSSVDEAFKYGAIDYLIKPFKFERFKEALSNYR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSN----EQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 + + L +Q +DQ I ++N E + L KGL+ +T + ++ Sbjct: 122 NRFVELNNIDNINQDYIDQYILNINANFLDEEMQEKELCKGLSLKTYNKIINYMIQKNGQ 181 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 + + +E+A ++RV+ R+YL +V + + YG GRP Y ++ Sbjct: 182 DLTAEEIAKGSGLARVTARRYLEKMVEEGKVEINQEYGKIGRPTNYYILKK 232 >UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcus faecium RepID=C9AP26_ENTFC Length = 238 Score = 225 bits (575), Expect = 8e-58, Method: Composition-based stats. Identities = 89/240 (37%), Positives = 130/240 (54%), Gaps = 5/240 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLII+DD MVAELNR +V IP + +E+ K+ + DL+LLD+YM Sbjct: 2 MTNVLIIEDDPMVAELNRTFVESIPNMNVIESFRNVEEGKK--YFRQKNADLLLLDVYMP 59 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 E+G+ L L VI+I++A D TIK+ + YG +DYLIKPF RF+ A+ + Sbjct: 60 GESGIHFLSWLRQQGNDIPVILITAADDIETIKNVIRYGALDYLIKPFTLQRFQLAIEKY 119 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPR--RLPKGLTPQTLRTLCQWIDAHQDYE 178 ++ + DQ +DQ+ + ++ + P LPKGL+ TL+ + I ++ Sbjct: 120 LAFSQTIQTTEKADQKLIDQVFNHTTPIHETPSFIDLPKGLSKLTLKKISASIL-KEETI 178 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 FST ELA + +SR+S +KYL +LV IL I Y GRP+ Y + L YC Sbjct: 179 FSTKELAQKSALSRISVKKYLNFLVEQDILNERIRYLEIGRPLTCYELTKNGRKKLTDYC 238 >UniRef50_A4SN90 Two-component system citrate/malate response regulator, CitB n=2 Tax=Aeromonas RepID=A4SN90_AERS4 Length = 223 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 9/225 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI +LI++DD +AE++RR+V ++ GF+ G TL A+E I DL+LLD+++ Sbjct: 1 MIKILIVEDDPAIAEIHRRFVQRLAGFEVLGVTLTLFDAREQIGI--LKPDLVLLDVWLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G LL L A DVI++++A +AA +++++ GVVD+++KP R + L + Sbjct: 59 DGEGFALLRELRQAGACLDVILLTAAREAAALQEAMRLGVVDFILKPVVFERLRDTLDNY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q + AL DQ +D L G+ + LPKG+ TL+ + + S Sbjct: 119 CQSRAALA---DIDQQAVDALF-GTPLQQVAAGGLPKGIDALTLQRVLAALT---GVGAS 171 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +E+ N V +SR + R+YL +LV + + YG GRP RY+ Sbjct: 172 AEEIGNRVGVSRTTARRYLEFLVGQQLASPELEYGTVGRPERRYQ 216 >UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65LB3_BACLD Length = 238 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + V I++DD A+++++ +++I GF G A + AK+++ D DL+LLDI++ Sbjct: 4 LQVFIVEDDIRNADIHQKLISKIDGFSVIGIAENFQDAKDLLP--DVKPDLVLLDIFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G++LL ++ +DV++I++A + ++ ++ G VDYLIKP SR +E L +R Sbjct: 62 GSGMELLWLIRQTLRHTDVMMITAAKEVEYVEQAIRAGAVDYLIKPIMFSRLKETLLNYR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQD---PRRLPKGLTPQTLRTLCQWIDAHQD-Y 177 ++ + + DQ ++D L+ S ++ PKG+ TL+ + ++ ++ Sbjct: 122 SYRLKVNEMSSIDQTDVDSLMAKRRSITKEQIAKADYPKGIDGLTLKKVAGVLNKSENSD 181 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + + L + +SR + R+YL +L + T ++YG GRP RY+ Sbjct: 182 GITAESLGRTIGVSRTTARRYLEFLAAEKHVKTELYYGTVGRPERRYK 229 >UniRef50_B7VN90 Response regulator of citrate/malate metabolism n=53 Tax=Gammaproteobacteria RepID=B7VN90_VIBSL Length = 231 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 3/223 (1%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 V++I+DD +AEL+ RY+ Q+ GF G A+T +A ++ DL+LLD+Y+ Sbjct: 6 RVMVIEDDIAIAELHHRYLEQMGGFDVVGIATTQSEA--LMQLDILKPDLVLLDVYLPDG 63 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 GLD+L + + DVI+I++A D T++ ++ GVVDYL+KP R E AL ++ Sbjct: 64 CGLDILNHVRGSNQGCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLEAALKKYQS 123 Query: 123 KKMALEKHQYYDQAELDQLIHGSS-SNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ E +Q +D+++ ++ ++ + LPKG+ TL + + + Sbjct: 124 QQQEFESVSDLNQGLVDKMLQANAKADSRKVSTLPKGIDGVTLDKIRAIFQQADIADITA 183 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 DE + SR + R+YL +L+ L ++YG GRP Y Sbjct: 184 DEAGERIGASRTTARRYLEFLITTGELVADLNYGSVGRPERCY 226 >UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=Bacillus halodurans RepID=CITT_BACHD Length = 230 Score = 223 bits (569), Expect = 4e-57, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 112/225 (49%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 VLII+DD VA++ + V P F T T +A + + +DLILLD+Y+ Sbjct: 5 YKVLIIEDDFRVAQIQEQMVNDHPYFHVISTCRTGGEALDYLSEKAAALDLILLDVYIPD 64 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 GL+LL + D++++++A + T++++L G++DYL+KP Q + L + Sbjct: 65 VKGLELLWAIREKFRDVDIMMVTAAKEVDTVQEALRGGIIDYLLKPVQKEVLHQRLDAYV 124 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 QK+ + + Q ELDQL + LPKG+ TL + ++ + + Sbjct: 125 QKRELFGERRQVSQEELDQLRQVQVRVQVGETPLPKGIDRLTLEKVVNALEEAETQGLTA 184 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 E A + SR + R+Y +L++ ++YG GRP RY + Sbjct: 185 MEGARLIGASRSTVRRYFEYLIHTKKAKAEVNYGDVGRPERRYFL 229 >UniRef50_A3JET4 Response regulator of citrate/malate metabolism n=5 Tax=Gammaproteobacteria RepID=A3JET4_9ALTE Length = 231 Score = 223 bits (568), Expect = 5e-57, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 6/228 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +LI +DD +AE+ RR++ ++ + CG A TL A+E DLILLD+Y Sbjct: 4 IRLLIAEDDRQIAEIQRRFIQRLEQVELCGIAHTLADARE--QAEVLKPDLILLDVYFPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGLDLL L + SDVI+I++A + T++ +L GV DY++KP R EEA+ + Sbjct: 62 GNGLDLLRELRASNSSSDVILITAAKEVETLRTALRGGVFDYILKPLAFERLEEAINRFC 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDP--RRLPKGLTPQTLRTLCQWIDAHQDYEF 179 L ++ Q E+D L+ +S + RLPKG+ TL + + + + Sbjct: 122 DHVERLSALKHLGQDEVDALLPRNSGENGNDSHHRLPKGIDVITLDRIREVVAD--GKPW 179 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 S +E+ + SR + R+YL ++ L + YG GRP RYR+Q Sbjct: 180 SAEEVGGAMGASRTTARRYLEYMTGTRTLAAEVTYGSIGRPERRYRMQ 227 >UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinomycetales RepID=C7QAY5_CATAD Length = 243 Score = 223 bits (568), Expect = 5e-57, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 11/230 (4%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VL++DDD VA+++ YV +IPGF G A + +A ++ + DL+L+D+Y+ Sbjct: 13 TVLVVDDDYRVAKIHAAYVDRIPGFTVAGQAHSAAQALHLV--AAIRPDLVLMDVYLPDG 70 Query: 63 NGLDLLPVLHNA------RCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 +GL ++ L A D +VI++A D +T++ ++ G V YL+KPF E Sbjct: 71 DGLTVIRKLLEAPESAASGPHPDFMVITAARDVSTVRTAMQLGAVHYLVKPFGYPAMAEK 130 Query: 117 LTGWRQKKMALE--KHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAH 174 LT + + ++ DQA++D+L P KG + TL + + A Sbjct: 131 LTSYLDLRRRMQTLNTADADQADVDELFGLLRGQPALPTLPAKGHSAPTLELVRSAVRAA 190 Query: 175 QDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + S E+A V ISR + ++YL +L ++ + YG TGRP +RY Sbjct: 191 PG-DISASEVAERVGISRPTAQRYLSYLTRHGVVRLQLRYGTTGRPEHRY 239 >UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7M1_9BACT Length = 228 Score = 222 bits (567), Expect = 7e-57, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+VLI++DD MVA ++R+++ + GF G S+ + A E + P+ L++LD+++ Sbjct: 5 IDVLIVEDDPMVAAIHRQFIGAVSGFIVAGVVSSGKDALEFL--QRHPVRLVILDVFLPG 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ L + VIV+S++ D TI L G DY+IKPF R + +L ++ Sbjct: 63 MDGVATLQKIREMNRTVGVIVVSASRDTNTINAVLKAGAFDYVIKPFVFERIQTSLRSFQ 122 Query: 122 QKKMALEKH-QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q + L + DQ ELD+L+ E LPKGL PQTL+ + + H S Sbjct: 123 QLENRLNRGADQIDQKELDRLLQ-VQQKETSTNDLPKGLNPQTLQQVKNLL-GHAASPLS 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 + E A + ISR++ R+YL +LV + Y GRP RY ++ Sbjct: 181 SVETAQALKISRITARRYLEYLVAAGEATLELEYQKVGRPTNRYALRK 228 >UniRef50_UPI00019732B8 two-component response regulator yufM n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019732B8 Length = 230 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M +V+I++DD MVA +NR+YV P F + + A + + +DLI+LD YM Sbjct: 1 MYSVIIVEDDPMVASINRQYVELEPSFSVKQIFKSGQDALSWLSREE--VDLIILDYYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G + + LH+ VI+++SA D+A +++ L GV+DYL+KPF+ SRF +AL+ + Sbjct: 59 LMTGQEFIDRLHSMGKAPSVIMVTSAGDSAIVQELLSRGVLDYLVKPFERSRFRQALSRF 118 Query: 121 RQKKMALEKHQYYDQAELDQLI-HGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 Q + L+ +QAE+D+L+ H ++ L KGL+ TL + ++ + F Sbjct: 119 AQTRSCLDGSPELNQAEIDRLLSHAQPASPSCQTELAKGLSETTLTLIRNFLKSRPGELF 178 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S++++A +V++SR++ R+Y+ +++ + +S+ Y GRP +Y Sbjct: 179 SSEQIAEQVHLSRITIRRYMNYMLEIGEIVSSVDYQTGGRPSIKY 223 >UniRef50_C1TQF1 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQF1_9BACT Length = 230 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 126/229 (55%), Gaps = 7/229 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD MV ++++R+V IPGF+ G + +++ +DL++LDIYM + Sbjct: 4 IRVLIVEDDPMVMDIHKRFVLSIPGFELVGLGANGMDGLKVL--EQRSVDLVILDIYMPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+ L + R DVIV+S+A + T++D + +G DY++KPF RF+EA+ G+ Sbjct: 62 LDGLETLHEIRRRRRNVDVIVVSAAHETDTVRDVMRFGAFDYIVKPFTYERFKEAMEGYL 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + DQ +D+++ + ++D R LPKGL L + + + S Sbjct: 122 ---LYWAQKGDLDQGAIDRIMRRGAREKRD-RCLPKGLGSVQLDRVRSILMEEEG-ALSA 176 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEH 230 DE+A +SRV+ R+YL +LV+ + + GRPV YR+ Sbjct: 177 DEVAVRAGVSRVTARRYLEYLVSINRAAVEPLHRDVGRPVNLYRLLDAK 225 >UniRef50_C7MRE3 Response regulator of citrate/malate metabolism n=2 Tax=Actinomycetales RepID=C7MRE3_SACVD Length = 227 Score = 220 bits (560), Expect = 4e-56, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 111/233 (47%), Gaps = 11/233 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL++DDD MVA+++ YV + PGF G A + A + D DLILLDIY+ Sbjct: 1 MIRVLVVDDDFMVAKVHSGYVNRTPGFTVIGAAHSGTAALRM--ARDERPDLILLDIYLP 58 Query: 61 KENGLDLLPVLHNARC--KSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 +GL +L L DV+VI++A D TI+ SLH G + YLIKPF + + L Sbjct: 59 DIDGLTVLRELRADPATVDIDVVVITAARDVDTIRGSLHGGALHYLIKPFSYAVLRDQLD 118 Query: 119 GW---RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 +K L Q E+D + G LPKGLT QT + + H Sbjct: 119 HVSSLHRKLERLSARPAAAQHEVDDVFSGRPRRTA---SLPKGLTEQTAALVRTALTEHP 175 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 + S E A+ +SR S R+YL + YG TGRP RY + Sbjct: 176 E-GLSATECAHVTRLSRPSTRRYLEHFAETGQAEVRLRYGGTGRPERRYHWRG 227 >UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacillaceae RepID=B1HPS7_LYSSC Length = 229 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 5/227 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL+I+DD VA+++RR++ +I GF A+T E+A + + LILLD+++ Sbjct: 4 IEVLVIEDDVRVADVHRRFLEKIEGFTVIACANTGEEALDWL--QSFAPQLILLDVFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+DL+ + S +I+I++A +A ++ + V DY++KPF + +E++ +R Sbjct: 62 ILGVDLIDKIKKMSPTSSIILITAATEAHIVQKAYRKNVTDYILKPFTFDQLKESIEKFR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSN--EQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 K + L+ ++ + Q ++ L ++S+ E LPKG+ T+ + ++ +D Sbjct: 122 FKHLLLQNNEKFTQEKIQCLWPKTASSIPEDTQLLLPKGIDLTTMNHVINYLSTRKDGS- 180 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + + L + +SR + R+YL +LV + + YG GRP RY I Sbjct: 181 TAELLGKNIGVSRSTARRYLEFLVTQKQAYIELTYGTVGRPERRYFI 227 >UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8G181_DESHD Length = 225 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPG-FQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 I VLII+DD MVAE N+ YV QI F+ GT T +A E + DLILLD+++ Sbjct: 4 IRVLIIEDDPMVAEFNKSYVEQIGHPFKVVGTCFTEAQALETL--KTNMPDLILLDVFLP 61 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+ LL + + DVI+I++A D+ T++++L YG VD+LIKPF RF++AL + Sbjct: 62 NGNGMHLLKTIRDNNFLLDVILITAAKDSVTVQEALRYGAVDFLIKPFGFKRFKQALLNY 121 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 K ++ Q +QA+LD + LPKG+ TL+ + ++ H + S Sbjct: 122 VHLKKVIDTEQEINQADLDSRF-DFLEIDYTTSSLPKGVHLLTLKLITDYLYDHPN-PKS 179 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 E+A ++++SR++ KYL LV + S+ Y GRP Y+++ Sbjct: 180 CHEIAADLSMSRITAWKYLEHLVKQGQVTVSLEY-KVGRPTKLYKLK 225 >UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42EA9 Length = 224 Score = 216 bits (551), Expect = 4e-55, Method: Composition-based stats. Identities = 91/214 (42%), Positives = 127/214 (59%), Gaps = 5/214 (2%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA N++YV +I GFQ G A ++AK+++ + I L+LLDIYM +NGL+LL + Sbjct: 1 MVASFNKQYVEEIKGFQLAGLAKCFDEAKQLL--EENDIQLLLLDIYMPGKNGLELLQYI 58 Query: 72 H-NARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKH 130 DVI++++A D +I+ +L YG VDY+IKPF+ RF +ALT +R+K L+ Sbjct: 59 RKETAYNVDVILVTAADDVDSIQTALRYGAVDYIIKPFEFERFNKALTTYREKHSLLKAQ 118 Query: 131 QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNI 190 Q Q ELD I E+ LPKGLTP TL+ + I ++ F+TDE+A V I Sbjct: 119 QSLKQEELDASILHQ--QEKKNMTLPKGLTPNTLQVIAAAIVDKENEPFTTDEIAETVQI 176 Query: 191 SRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 SRVS RKY+ +L L + YG GRP Y Y Sbjct: 177 SRVSVRKYIKYLKEIGALAERMTYGAIGRPFYVY 210 >UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACD4_CARHZ Length = 220 Score = 216 bits (550), Expect = 6e-55, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI +I++DD MV E+N+ ++ ++ GF+ + + + N +L++LDIY+ Sbjct: 1 MIKTVIVEDDPMVLEINKNFIKEVEGFEIIAALKSGSELLNFLKNH--SPELLILDIYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL LL + DV+ I++A + + L YGVVDY+IKPF+ R +AL + Sbjct: 59 DIDGLTLLKEIRRQNISVDVLAITAAQQGEIVAELLRYGVVDYIIKPFKKERLVKALLTY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + K + + + + Q ++D+L SS+ LPKGL TL+ + ++ ++ + Sbjct: 119 KNKYLKIGRKRSVQQEDIDRLFARSSAG----GELPKGLNDITLKKILSLLEETRE-PLA 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 E+A ISRV+ R+YL +L + I YG GRPV Y ++ Sbjct: 174 AAEVAKRAGISRVTARRYLEYLEREGLAGKEIRYGSIGRPVNYYYLR 220 >UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XCK5_NAKMY Length = 231 Score = 216 bits (550), Expect = 6e-55, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 124/227 (54%), Gaps = 6/227 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL+++D+ + A ++ YV +I GF+ A++ +A+ + + IDL+LLD+++ Sbjct: 1 MIRVLVVEDEPIAARAHKAYVERIGGFEVAAVANSRIEAERAL--AKGGIDLVLLDLHLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NGLDL + A DV+V+SSA DA ++ ++ G V YL+KPF + + LT + Sbjct: 59 DGNGLDLFRRIRAAGSTVDVMVVSSARDADVVRSAVAQGAVQYLLKPFAFNALRDRLTSY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R+ + + DQA + + + + LPKG+T +TL + + D S Sbjct: 119 REFAEQVAGAEDVDQASVVRALG--MLRAPNTGSLPKGMTKETLAIVVGALRELGDA--S 174 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 ++ + + +SR++ R+YL L + ++ ++ YG GRP RY ++ Sbjct: 175 ATQIGDFLGVSRITARRYLEHLADTNVAERTLKYGQVGRPETRYGLR 221 >UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX8_BACP2 Length = 233 Score = 215 bits (549), Expect = 7e-55, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLI +DD +A ++ Y+ QI GFQ G A + + E + +DLILLD+YM Sbjct: 3 MKVLIAEDDFRIAAIHASYIQQIEGFQVAGKAKSAKDMWEAL--QQEQVDLILLDVYMPD 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 E G +LLP+L + DV++I++A + ++D+L YGVV YLIKP A +F + LT ++ Sbjct: 61 ELGTNLLPLLRERYPEVDVMIITAATETTLLRDALQYGVVHYLIKPVTAQKFAQVLTEYK 120 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDP--RRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +KK + +Q +D ++ R LP G+ TL + I++ D Sbjct: 121 EKKDMINSKDEVNQTMIDLFFGQMQEEPKEKGDRDLPTGINSLTLDKVKTLIESEND-GI 179 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S +EL ++ SR + R+Y+ +LV + YG+ GRP +Y Sbjct: 180 SAEELGEKMGASRTTARRYVEYLVTTGECRAELAYGIIGRPERKY 224 >UniRef50_C3JVF9 Response regulator receiver domain protein n=12 Tax=Actinomycetales RepID=C3JVF9_RHOER Length = 229 Score = 215 bits (549), Expect = 8e-55, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNS---DTPIDLILLDI 57 MI VLI+DD+ ++A+ +R YV ++P F G + A + + D PIDL+LLDI Sbjct: 1 MIRVLIVDDEPLIAQAHRSYVERVPEFVVHGVVHSGNAAVRAVTAANATDQPIDLVLLDI 60 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 + +GLD+ L R D+I ++SA D ++ ++ G+V YL+KPF + F + L Sbjct: 61 GLPDASGLDVASALGGLRPSPDIIAVTSARDLEVVRSAVARGIVLYLLKPFTFAAFRDKL 120 Query: 118 TGWRQKKMALEK-HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + + + AL Q ++D+ + +++ D PKG QTL + + + Sbjct: 121 ERYLEYRAALPAGESAVSQHDIDRAMSALRTSD-DRAAAPKGFASQTLGLVAASVRDSEG 179 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + E+A V +SRV+ +YL L + +L YG GRP RYR Sbjct: 180 -PVTAAEVAASVGVSRVTAWRYLEKLADDGMLTRETEYGRAGRPQVRYR 227 >UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=A6W416_KINRD Length = 238 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 116/233 (49%), Gaps = 12/233 (5%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VL++DDDA VA ++R YV +P F CG + T DL+LLDI++ E Sbjct: 11 RVLVVDDDATVALVHRGYVETLPRFTVCGVVHRGADVLPAV--RATAADLVLLDIHLPDE 68 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +GLD+L L DV+ I++A D T++D++ GV YL+KPF + F E + + Q Sbjct: 69 SGLDVLRRLRAHGVDVDVVAITAARDVDTVRDAMAGGVWHYLVKPFSLATFAERMEAYAQ 128 Query: 123 KKMALEKHQYYD---QAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWID----AHQ 175 ++ + D Q E+D+L+ +S + LPKGL+P+TL + + Sbjct: 129 HRLEFARRDGSDALGQEEVDRLL---TSRRRSASALPKGLSPRTLDVVVDHLRAGAGGDG 185 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 + S ELA I+RVS R+YL L + YG GRP YR Sbjct: 186 TGDVSAAELAARCGIARVSVRRYLEHLERAGLAEVRPRYGRAGRPENGYRWSG 238 >UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammaproteobacteria RepID=C3LT43_VIBCM Length = 227 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 115/224 (51%), Gaps = 3/224 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+VLI++D+ +A+++ Y+ Q F+ G A ++ +A+ ++ LI LD Y+ Sbjct: 5 IDVLIVEDETSIADVHSFYLKQTARFRPVGVAQSINEARNMVRILKPK--LIFLDNYLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G++ L L + DVI I++A+D T+++++ GV DYL+KP R + +L + Sbjct: 63 GRGIEFLKELTHQPQAPDVIFITAASDMETVREAVRCGVFDYLLKPIAYDRVQNSLERYL 122 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + +L + +Q +D+L + + +Q LPKG+ TL + + ++ Sbjct: 123 KYISSLRANDSVNQRHVDELFNFQAKTDQ-LDGLPKGIDELTLIKIQEIYHHEPQAAYTA 181 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + L + IS+ + R+YL + V L I +G GRP Y+ Sbjct: 182 ELLGQAIGISKTTARRYLEYCVASGFLEACIQHGRVGRPERLYQ 225 >UniRef50_C1TQ18 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ18_9BACT Length = 227 Score = 213 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+VL+++DD MVA++++ YV + GF+ G KA + + P+ L++LDI++ Sbjct: 4 IDVLVVEDDPMVADIHQNYVNSVDGFRVVGMVDNGLKALDFL--RKRPVRLVILDIFLPG 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL L + + DVI+IS++ D AT+ +L G DY++KPF R + AL +R Sbjct: 62 LDGLGALERIRESGSNVDVIIISASRDKATVNKTLQAGAFDYIVKPFAFDRMKAALQAFR 121 Query: 122 QKKMAL-EKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q L E DQ ++D L+ + + LPKGL P L + + D S Sbjct: 122 QVVHRLTEGPNQVDQQDIDNLLLA-RNKKNIQTVLPKGLNPNVLEKVEALL-TKVDKPLS 179 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + E A + +SR++ R+YL +LV Y GRP+ +Y + Sbjct: 180 SVETAEAIGVSRITARRYLEYLVASDKAVMEREYQEVGRPINKYEL 225 >UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=Bacillus RepID=CITT_BACSU Length = 226 Score = 213 bits (543), Expect = 4e-54, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 121/229 (52%), Gaps = 3/229 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI++ I +DD VA+++ R + Q+ GF+ G A+ ++ ++ + DL+LLDIYM Sbjct: 1 MIHIAIAEDDFRVAQIHERLIKQLDGFKIIGKAANAKETLALL--KEHKADLLLLDIYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 E G L+P + + + D+++I++A + ++++L G+ YLIKP A +F + L + Sbjct: 59 DELGTALIPDIRSRFPEVDIMIITAATETRHLQEALRAGIAHYLIKPVTADKFRQVLLQY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 ++K+ L Q+ +D + LP G+ TLR + + + + + Sbjct: 119 KEKRKLLMSQPEVSQSMIDHIFGNGVKTALPAEDLPTGINSITLRKIKEALQTASE-GLT 177 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 +EL ++ SR + R+Y +LV+ + YG+ GRP +Y + A+ Sbjct: 178 AEELGEKMGASRTTARRYAEYLVSKEEARAELEYGIIGRPERKYYLAAD 226 >UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJA4_BACSK Length = 223 Score = 213 bits (543), Expect = 4e-54, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 3/224 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + ++I +DD VAE++ +++ ++ A +A + D++LLD+Y+ Sbjct: 1 MKIMIAEDDYRVAEIHEQFLKKMKNVDVVAKAQNATEAVSLANMHQ--PDVLLLDVYLPD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+D+LP LH A +++I++A + +L GVVDYL+KP R ++++ + Sbjct: 59 RLGVDVLPELHQACPDMQIVLITAATEKTIFHKALQNGVVDYLVKPIAFERLQQSVDKAK 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + L+ Q DQ DQ G+ + P LPKG+ TL + + Q + Sbjct: 119 SLRKWLQDKQPVDQQAADQFFQGAKTKHAPPEALPKGIDQLTLERVRTLLRQ-QSEGVTA 177 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + L + SR + R+YL +L++ + + YG+ GRP +Y Sbjct: 178 EALGRKFGASRTTSRRYLEYLISTNEAKAELEYGIVGRPERKYW 221 >UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinococcus RepID=Q1J047_DEIGD Length = 233 Score = 213 bits (543), Expect = 4e-54, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 11/233 (4%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VL+++DD VA +NR + + P G+A+TL +A ++ DLILLD+++ Sbjct: 5 RVLLVEDDLRVARVNRDLLERDPDVHVVGSAATLAQADALL--QALAPDLILLDVHLPDG 62 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +GL+LL +DV +I++A D A+++ +L G DYLIKPF +R E + R Sbjct: 63 SGLNLLRHWRAQGRTTDVALITAADDEASVRTALAQGAFDYLIKPFTGARLAEVVARHRA 122 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 +++ DQ+ LD+L+ S P LP+G+ P TL + Q ++ S + Sbjct: 123 RRV---PRGTLDQSHLDRLLGVSGG---IPEPLPRGIDPHTLERVAQVLEG-AGGALSAE 175 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY--RIQAEHYSL 233 E+ + ++SRV+ +YL LV YG+ GRP Y R+Q + + Sbjct: 176 EVGDRAHLSRVTAWRYLEHLVRVGRASLDHQYGLAGRPAKLYCARVQDASHGM 228 >UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella RepID=A6WJS0_SHEB8 Length = 226 Score = 213 bits (542), Expect = 5e-54, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M V+I++D+ VA L +Y+ ++ G AS + A+ ++ DL+LLD+Y+ Sbjct: 1 MHTVIIVEDEVEVAHLVAQYLFSTNRYKVIGMASDISTARSLLGA--ITPDLLLLDVYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NGL+LL L + +S+V+++++A + ++ ++ GV D+L+KP SR ++AL+ + Sbjct: 59 DGNGLNLLAELRSQGIRSEVVLLTAAKEVQILEKAMQLGVFDFLVKPVLLSRLDQALSRF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 +++ L + Q+ +D + + + RLPKG+ TL+ + + DA + + Sbjct: 119 ESRQLKLSATEELTQSVVDAFMEVPTGTTKAAARLPKGVDQLTLQKIREVFDAKPQDKLT 178 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + ++ +SR + R+YL +L+ C+ L YG GRP Y Sbjct: 179 AQMVGEKLGVSRSTARRYLEFLLECNELAADQSYGSIGRPERCY 222 >UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax=Streptomyces RepID=B4VFP7_9ACTO Length = 238 Score = 212 bits (541), Expect = 7e-54, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 4/221 (1%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 VA +N YV ++PGF+ A + +A E++ SD P+DLILLD Y+ ENGLDL+ L Sbjct: 2 RVARINAAYVEKVPGFEVAARAHSAAEALELL--SDRPVDLILLDHYLPDENGLDLVRHL 59 Query: 72 HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQ 131 +DVI++++A D AT++ ++ G + YL+KPF L + + +LE Sbjct: 60 RRRGDLTDVIMVTAARDLATVQAAMRLGALQYLVKPFTFGALRSRLEAYGSLRHSLESGG 119 Query: 132 YYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNIS 191 +QAE+D++ G+ ++ P LPKG +P T + Q + + D ST ++A+ IS Sbjct: 120 EAEQAEVDRIF-GTLASAGTPNALPKGHSPTTAELVRQVLRS-ADGPLSTQQIADLAGIS 177 Query: 192 RVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYS 232 R + ++YL L + ++ YG TGRP +RY + Sbjct: 178 RQTAQRYLKLLDRTGRVTLALRYGETGRPEHRYAWRPSDRP 218 >UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism n=4 Tax=Vibrio RepID=Q8D7P7_VIBVU Length = 224 Score = 212 bits (540), Expect = 8e-54, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI V+I++DD +AEL++ ++AQ+ F+ G A+ L A+++I + DL+++D Y+ Sbjct: 1 MIKVVIVEDDERIAELHQFFIAQLDNFEVIGIAANLTTAEQLIIAAK--PDLVIIDNYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G++L+ + K + IVI++A DA T+ + YG DYL+KP +R + +L Sbjct: 59 DGLGVELVQRCLVLQPKPECIVITAANDANTVHLAHRYGAFDYLVKPVNYTRLQASLLRL 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + K ++ + Q+ELD + H + + G+ TL+ + + H E + Sbjct: 119 MKMKQLVDSQKMVKQSELDGIFHAT----ELVVDEASGVDEFTLQQVVS-LFPHGHSEHT 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 +A + +S+ + R+YL V L+ + +G GRP YR + Sbjct: 174 AASVAALLGVSKSTARRYLDKAVERGDLYAFLAHGKVGRPTRCYRNKP 221 >UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q1B0_9ACTO Length = 226 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 125/231 (54%), Gaps = 11/231 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL+++DD + AE +R YV ++PGF C G A T +A +++ S IDL+LLD+ + Sbjct: 5 LRVLVVEDDPVAAEAHRTYVDRLPGFTCVGIAGTAARALQVL--SHGQIDLVLLDMNLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW- 120 +GLD++ + A ++DV+ ++SA + + ++ + GVV Y++KPF + L+ + Sbjct: 63 GHGLDVVRRMRAAGNQTDVVAVTSAREVSAVQAAARIGVVQYVLKPFAFETLRDRLSAYA 122 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 RQ++ A DQ E+D+L+H +PKGL L + Q + + + + Sbjct: 123 RQRRAAESGQVVADQDEVDRLLH-----PATVSSVPKGLAGSVLDRVVQLLGNREGW--T 175 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHY-GVTGRPVYRYRIQAEH 230 +E+A + SR++ R+YL L + + Y G +GRP Y +E Sbjct: 176 AEEVATSLGTSRITARRYLEHLADQGQALRTQRYDGRSGRPKVEYSWVSES 226 >UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax=Enterobacteriaceae RepID=DPIA_ECO57 Length = 226 Score = 209 bits (532), Expect = 7e-53, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +LI++D+ +AE++ Y+ IPGF A L +A+ +I LILLD Y+ Sbjct: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI--ERFKPGLILLDNYLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G++LL L A DV+ ++A+D T+ +++ GV DYLIKP R + LT +R Sbjct: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 Q+K LE Q ++D++ + + E LP G+ P TL + + + + + Sbjct: 123 QRKHMLESIDSASQKQIDEMFNAYARGE-PKDELPTGIDPLTLNAVRK-LFKEPGVQHTA 180 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + +A + ISR + R+YL + + H++ I +G GRP Y Sbjct: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 >UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=Lactobacillales RepID=B3WBQ3_LACCB Length = 229 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 128/233 (54%), Gaps = 5/233 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M N+LI++DD MV ++R Y+ +I F ++ T+ AK+++ + I L+LLDI ++ Sbjct: 1 MTNILIVEDDPMVQFIHRNYLEKIGTFDTIYSSETIADAKKLLASR--SIQLVLLDIRLK 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+D L L + DVI+I++A + + D+LH GV+DYLIKPF RFE+++ + Sbjct: 59 DGNGIDFLTDLRRTKQTVDVILITAANEVNIVNDALHLGVIDYLIKPFTLERFEKSIQRY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R K AL Q +Q++LD ++ L KGL+ TL+ + I F+ Sbjct: 119 RTKHQALVTDQ-LNQSQLDTYFEPQTTIPPTVD-LDKGLSKATLQLIQGAIKQLP-QPFT 175 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 +L E +S VS RKYL +L + H L Y TGRP Y++ ++L Sbjct: 176 VAQLTTETGLSHVSVRKYLSFLEDHHFLKGDTIYRKTGRPYKTYQMVTAPHAL 228 >UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q894L8_CLOTE Length = 233 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 132/236 (55%), Gaps = 12/236 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI V+II+DD MV E+N R++ +I GF+ C AS L++A + I + L+ IY+ Sbjct: 1 MIKVMIIEDDPMVMEINYRFLNKIEGFKVCKKASNLKEAYDYILKHKLDLILLD--IYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +ENGL+ L L D I+I++ ++K++L YG VDY+IKPF +RFEE + Sbjct: 59 RENGLEFLKKLRKDEIGLDAIIITADRSKDSLKEALMYGAVDYIIKPFTFNRFEETFKNY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSS------SNEQDPRRLP---KGLTPQTLRTLCQWI 171 R K + LE +Q +D+LI + N +PR KGL T + + I Sbjct: 119 RGKYIKLENLDQLEQNTVDKLISNTRCGDCNKKNTLEPREYTHLIKGLNKFTYEKIWEHI 178 Query: 172 DAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 Q+Y F+ +E+A E+ ++R++ RKYL ++ + L + YG GRP + Y+++ Sbjct: 179 HKRQNY-FTAEEIAKEIGMARITIRKYLEYMCIENKLGFKLEYGKVGRPRHEYKVK 233 >UniRef50_UPI0001C42291 response regulator receiver/unknown domain-containing protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42291 Length = 227 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 3/226 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI++DD MVA +N+ Y+ ++ F + E+A I I+L+LLD+YM K Sbjct: 3 IKTLIVEDDPMVASINQGYLEKLDSFFVVDIVTNGEEALSKIRMKK--IELLLLDVYMAK 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGL+LL + K DVI+I++A I++ GVVD ++KPF RFE +L + Sbjct: 61 MNGLELLRRIRKENEKIDVIMITAADSPEIIEEIFRLGVVDCILKPFDFKRFERSLLTYY 120 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ + +Q+ +D + + + LPKG+ TL T+ + + + Sbjct: 121 KRYNMFNTKEPMNQSIIDSININEENKKLTFNPLPKGIDSITLNTIRKVLKEAP-CPLTI 179 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 EL V IS+++ RKYL +L + + ++Y GRP Y + Sbjct: 180 QELEKHVQISKITIRKYLEFLALNNEIKLDLNYSTKGRPSKLYSYK 225 >UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNG4_9FIRM Length = 226 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD MVAE+N+++ + GF G A F + +DLI+LD Y+ + Sbjct: 4 IRVLIVEDDPMVAEINKKFTEAVTGFTVVGVVKDGAAALA--FVAQKSVDLIILDNYLPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 + G+++L L DVI++++A D+ T+ L GVV Y+ KPF+ R+ L +R Sbjct: 62 KTGVEVLAELRRRDQPVDVIMVTAADDSKTVSRILRQGVVGYIAKPFKFERYRAVLEAYR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + K Q ++D++ + P +PK + QT+ + ++ A+Q S Sbjct: 122 SFREKTLKKTNLAQEDIDEMFSVRQRS-AGPDDIPKNFSQQTMNLIIDFL-ANQTAPLSA 179 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +E+A V ISRV+ R+YL + V+ + ++ Y GRPV+R+++ Sbjct: 180 EEIAAGVGISRVTARRYLEYFVDLGRVQRTMEYLTVGRPVHRFKLV 225 >UniRef50_A6W5B7 Two component transcriptional regulator, Fis family n=3 Tax=Actinomycetales RepID=A6W5B7_KINRD Length = 231 Score = 207 bits (527), Expect = 3e-52, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 11/230 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNS--DTPIDLILLDIY 58 MI VL+++DD ++A + VA +PGF+ + +A + + DTPIDL+LLD+ Sbjct: 1 MIRVLVVEDDPLLAAGHAEKVAAVPGFEVVAAVHSGREALAAVGAAGADTPIDLVLLDMT 60 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + +GL +L L A +DVI +++A + AT++ +L GVV YL+KPF A+ EE L Sbjct: 61 LPDVDGLQVLRALRAAAVPADVIAVTAAREPATVRQALSMGVVQYLLKPFSAAALEERLR 120 Query: 119 GWRQKK---MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWID-AH 174 + + + A DQ +D+ + + +G+ TL+ + + A Sbjct: 121 AYARFRADVAAASGEHGIDQQAIDEALSQLRTAAPG-----RGVAAPTLQAVVAALRTAP 175 Query: 175 QDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S E+A +SRVS R+YL L + YG +GRP Y Sbjct: 176 SSQGLSAAEVAAATGLSRVSARRYLEHLSAAGRVRREPRYGGSGRPELAY 225 >UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Corynebacterineae RepID=A1UKS8_MYCSK Length = 233 Score = 207 bits (527), Expect = 3e-52, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 6/230 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNS---DTPIDLILLDIY 58 I+VLI++DD ++AE ++ Y++++ GF A T A + + PIDL+LLD+ Sbjct: 6 ISVLIVEDDPLIAEAHQTYLSRLTGFATAAVAHTARDAMRAASEAATGEHPIDLVLLDLG 65 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + G+ L L R D+I I+S D ++ ++ +G + YL+KPF + F + L Sbjct: 66 LPDATGISLASALSGLRPAPDIIAITSERDLEMVRAAVSHGALAYLLKPFTFAAFRDRLE 125 Query: 119 GWRQKKMALEKH-QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 +R+ + AL Q E+D+ + D PKG P T + + + D Sbjct: 126 RYRRYRDALPAGIDAASQTEVDRAL-AELRGSADRATAPKGTAPGTNDEIARAVRDSAD- 183 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 + D++A++V +SRV+ +YL L + + YG GRP RY+ + Sbjct: 184 GLTADQVASQVGVSRVTAWRYLERLADDGTVTRLTDYGRAGRPKTRYQWR 233 >UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=Aeromonas RepID=A0KHN5_AERHH Length = 230 Score = 206 bits (526), Expect = 4e-52, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 L+I+DD + + V+ PGF G A +L +A + L+L+DI + +G Sbjct: 7 LVIEDDERIGSILAELVSSTPGFSLLGRAESLTQAD--LMMRAAQPQLLLVDISLPDGSG 64 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 L+ + L + ++ VI+++++ D TI+ +L+ GV DY+IKP + R +++L Sbjct: 65 LEWVNRLRSHNREAYVIMVTASCDVETIQQALNQGVQDYIIKPLRLFRIQQSLDEILTLH 124 Query: 125 MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDEL 184 + + +Q++LD+L+ ++ R PKG+ TLR + + + D FSTD + Sbjct: 125 RRICERGSLEQSDLDRLMGKVRPQGREVRDTPKGIDAITLRQVLELLAGEPDSAFSTDTV 184 Query: 185 ANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 A +++SR + R+YL +L + + ++YG GRP RY + Sbjct: 185 ALRLSLSRTTARRYLEYLESEDRVDVDLNYGQRGRPERRYHWR 227 >UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringens RepID=Q0SVM1_CLOPS Length = 222 Score = 206 bits (525), Expect = 5e-52, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 133/224 (59%), Gaps = 6/224 (2%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 +LI++DD MVA +N+R++ + G T E+ +++ + IDLILLD+Y+ K+ Sbjct: 4 KILIVEDDPMVALINKRFLENMGFKDILGPVQTEEEIIQLLDKEN--IDLILLDVYLPKK 61 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 NG+D+L L + +DVI+I++A +K + YGV DYL+KPF+ RFEEA+ ++Q Sbjct: 62 NGIDILKSLRYKKYLTDVIMITAANSVEEVKRAFAYGVTDYLVKPFEFERFEEAINKYKQ 121 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 K L K + Q ++D + S + ++ LPKGL +TL + +++ ++ ++ Sbjct: 122 KNNLLNKREALSQQDIDVI----SKSLEEKIELPKGLNQKTLDRIMEFLKENKGKVWTLR 177 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 E+A E+ IS V+ +KY+ +L + + ++ G GRP Y+Y + Sbjct: 178 EIAYELKISNVTIKKYMDYLEDIKKVNVTLTSGNVGRPEYKYTL 221 >UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J1H7_DEIGD Length = 217 Score = 205 bits (523), Expect = 7e-52, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 12/224 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI++DD +A L+R + F+ GTA TL+ A+ + DL+LLD+Y+ Sbjct: 4 IRTLIVEDDPRIARLHRGQLEGAGDFEVLGTAETLQVAR--VMAETLCPDLLLLDVYLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 GLDLL L + D +++++A+D +++++L G DYL+KP RF AL R Sbjct: 62 GRGLDLLRELRARGQRVDAVLLTAASDIPSVQEALALGAADYLVKPCTPERFALALDRVR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + AL + + Q LD L P GL P+TL + + + +S Sbjct: 122 E-RSALWQQEAVRQGHLDALF-------ARPPLPASGLDPETLHRVRATLRS--GRAYSA 171 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 EL + +SRV+ +YL LV + GRPV RYR Sbjct: 172 RELGQTLGLSRVTAWRYLEHLVEAGEACAATDVRGIGRPVKRYR 215 >UniRef50_Q03TV3 Response regulator of citrate/malate metabolism n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03TV3_LACBA Length = 238 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 130/239 (54%), Gaps = 4/239 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +LII+DD MV +N R++ +IP Q + LILLD+Y+ + Sbjct: 1 MKILIIEDDPMVRLINHRFLERIPQLQAATIVECPSAVAALARPDLAEYTLILLDMYLPQ 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G + L L + VI++++A D T+K++++YGV+D+LIKPF RF++A+ + Sbjct: 61 LSGTEFLAELLGRQLHPQVIMMTAANDQQTLKEAVNYGVLDFLIKPFTFDRFQQAMAKF- 119 Query: 122 QKKMALEKHQYYDQAELDQLIHGSS--SNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + +A++ Q +LD L G++ + LPKGLT +L+ + + A F Sbjct: 120 TRLLAVDDKHTVSQTDLDSLFLGATVPVSTTTTAELPKGLTKLSLQRIVTAL-ATLKPGF 178 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 S ++A++ +SRVS +KY+ +LV L ++I Y +GRP+ +++ L++ Y Sbjct: 179 SNQDVADQTGLSRVSTKKYVDFLVAMGYLTSAIVYQSSGRPLTTFQVVPTSERLIQPYL 237 >UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax=Enterobacteriaceae RepID=CITB_KLEPN Length = 234 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 4/224 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI++D+ M+AE+ + Q P F G A LE A++ + LILLD ++ Sbjct: 4 ITTLIVEDEPMLAEILVDNIKQFPQFDVIGIADKLESARKQLRLYQ--PQLILLDNFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+DL+ + K +I I++ TI ++L GV DYLIKP R + L + Sbjct: 62 GKGIDLIRHAVSTHYKGRIIFITADNHMETISEALRLGVFDYLIKPVHYQRLQHTLERFA 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLP-KGLTPQTLRTLCQWIDAHQDYEFS 180 + + +L + Q +D L + + + +P P +G+ T + + Q + A + Sbjct: 122 RYRSSLRSSEQASQLHVDALFNIQAREQTEPASAPLRGIDESTFQRVLQ-LFADPTVVHT 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 D LA + S+ + R+YL V L I YG GRP Y Sbjct: 181 ADSLARILGSSKTTARRYLEQGVKNDFLEAEISYGKVGRPERIY 224 >UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42F37 Length = 231 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 8/232 (3%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA+ N +V +IP F+ G A +E+ + ++ +DLILLD+YM ENGLDLL L Sbjct: 1 MVAKFNAIFVERIPEFKLVGVARGIEEGWTYL--NEEAVDLILLDVYMTNENGLDLLMEL 58 Query: 72 HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQ 131 DVIV+SSA D +I+ +L +G VDYLIKPF+ RF++AL ++Q + K + Sbjct: 59 RRENHPVDVIVVSSANDRGSIQTALRFGAVDYLIKPFEFDRFQDALLRYKQTFQDM-KKE 117 Query: 132 YYDQAELDQLI-HGSSSNEQDPRRL---PKGLTPQTLRTLCQWIDAHQDYEFSTDELANE 187 Q E+D+L +SN+ P+ PKG+T +T + + I+ H D+ FST++L + Sbjct: 118 AIQQEEVDRLFLTKGNSNKNVPKADLPLPKGITKETYIRVLREINKHSDW-FSTNDLVDA 176 Query: 188 VNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 ISRVS RKYL +L N IL + Y TGRP+++Y++ + Y + + Sbjct: 177 TGISRVSLRKYLQYLTNSDILLFDVDYQRTGRPLHQYKLTNQGYDYIVSVLK 228 >UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=Cronobacter RepID=C9Y0H6_CROTZ Length = 260 Score = 203 bits (517), Expect = 4e-51, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 3/225 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M +VLI++D+ +A L+ V Q P + G A+TL A+ I D L+LLD Y+ Sbjct: 33 MTDVLIVEDENQLAALHAEMVKQHPYLRLVGMAATLADAERQI--RDKRPHLVLLDNYLP 90 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G+ L L VI I++A+D T ++ G DYL+KP R +L + Sbjct: 91 DGKGITLTESLTLKNSACSVIFITAASDMDTCSQAIRNGAFDYLLKPVSWKRLNHSLERF 150 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q + + DQ +D L + + + P KG+ TL + + ++ FS Sbjct: 151 VQFREQQRVWKIVDQQNVDSLYQLQARSFR-PDSGAKGIEESTLTLVQRLFVDSREQIFS 209 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 D++ + +S+ + R+YL V L + YG G P YR Sbjct: 210 VDDVVSATGLSKTTTRRYLEHCVESGFLTVEMLYGKIGHPRRLYR 254 >UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus HB8 RepID=Q53VZ6_THET8 Length = 217 Score = 203 bits (517), Expect = 5e-51, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 19/224 (8%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 LI++DD VA L+R ++ + G + G A TL +A + + DL+LLD+Y+ +G Sbjct: 12 LIVEDDRRVAALHRAFLEE-EGLRVGGIAGTLREAWAFL---EENPDLVLLDLYLPDGHG 67 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 L+LLP L +VI++A D T++ +L G +DYL+KPF SR EAL +R + Sbjct: 68 LELLPALEGVYT----VVITAARDVPTVERALLGGAMDYLVKPFGRSRLREALARFRAFQ 123 Query: 125 MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDEL 184 L+ + QA++D+L+ R+ PKGL P TL + + + +E+ Sbjct: 124 N-LKAKKEVSQADVDRLLG--------RRQAPKGLDPLTLGRVLALL--QGGKPLTAEEV 172 Query: 185 ANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 A + +SRV+ +YL L + YG TGRP YR++ Sbjct: 173 AEALGLSRVTAWRYLEALRREGRVRAEPRYGGTGRPSRAYRLEP 216 >UniRef50_B1W256 Putative two-component system response regulator n=4 Tax=Streptomyces RepID=B1W256_STRGG Length = 217 Score = 203 bits (516), Expect = 5e-51, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 105/223 (47%), Gaps = 12/223 (5%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA+L+ RYV+ + GF G A A DL+LLDIY+ +G+ +L L Sbjct: 1 MVAKLHSRYVSAMDGFAVVGVAHNGADALRA--AERLRPDLVLLDIYLPDMDGIGVLRAL 58 Query: 72 HNA------RCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKM 125 A R +D + I++A DA I+ +L G + YLIKPF S +E + + Sbjct: 59 RAAEERDASRPSADALFITAARDAGVIRAALRAGALHYLIKPFSRSALQEQMRHVASLRT 118 Query: 126 ALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELA 185 L++ Q ++DQ+ + R LPKGL T + + + +H D S E A Sbjct: 119 RLDRLGEARQEDVDQIFG---TRPPGSRELPKGLAAPTADLVERVLRSHPD-GLSASECA 174 Query: 186 NEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 +SRVS R+YL ++ YG TGRP RYR Sbjct: 175 EVGALSRVSARRYLEHFAGTGRAEVTLRYGGTGRPERRYRWTG 217 >UniRef50_C2IT51 Response regulator of citrate/malate metabolism n=13 Tax=Vibrionaceae RepID=C2IT51_VIBCH Length = 227 Score = 202 bits (515), Expect = 8e-51, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 111/225 (49%), Gaps = 9/225 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M+NV+I++DD + L+ ++V Q F STL A++++ + DL+++D Y+ Sbjct: 3 MLNVIIVEDDPQIGGLHAQFVQQDERFNVLAMVSTLADAQKMVEWAK--PDLVIVDNYLP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G++L+ L + + K I++++A D T + + +G DY++KP R E+L + Sbjct: 61 DGLGIELVRALIDVQPKPACILVTAACDLETAQQAYRFGAFDYVVKPVDYRRLAESLQRF 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + + Q +LD+L H S Q + TL + + +H + E + Sbjct: 121 YRLRHPEPFSKAVRQQDLDELFHPQRSKPQTT------IDDFTLEQMLEHF-SHTNVEHT 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 D +A + IS+ + R+YL V + + +G GRP YR Sbjct: 174 ADSMALRLGISKSTARRYLDSAVEAGEITAYLEHGKVGRPTRVYR 218 >UniRef50_C5CAK7 Response regulator of citrate/malate metabolism n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAK7_MICLC Length = 238 Score = 202 bits (514), Expect = 8e-51, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 8/231 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDT-----PIDLILLD 56 VL+++D+ + AE ++ ++PGF+ A +L A+++ P D++LLD Sbjct: 6 YRVLVVEDEQLTAEAYVAHLDRLPGFEVSAVAGSLLAARQVAAAGLHTDGRFPFDVVLLD 65 Query: 57 IYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 + + +GLD L L A V+ +++A D ++ ++ YGV YL+KPF F + Sbjct: 66 MNLPDGHGLDFLHQLRAAGFHGGVLALTAATDLPVVRRAVAYGVTQYLVKPFGFDEFADR 125 Query: 117 LTGWRQKKMALEKHQYYD-QAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 L G+R L + Q ++D + S E+ LPKGLT TLR + + A Sbjct: 126 LGGFRAASAMLAGDGALEGQEQVDAVFRVS--RERRAEALPKGLTEGTLREVMDLLGADP 183 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + S E+ + ISRV+ R+YL L + S +G GRP YR Sbjct: 184 ETALSAAEVGERLGISRVTARRYLEHLERIRRVRRSARHGGRGRPEQEYRW 234 >UniRef50_B8K774 Response regulator of citrate/malate metabolism n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K774_VIBPA Length = 223 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 8/225 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLII+DD +A L+ +++++ FQ A L +A + + T DL+++D Y+ Sbjct: 1 MFNVLIIEDDRNIAALHSQFISRDNRFQVLAIAENLAQAHSKL--AQTVFDLVIIDNYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G+D L + + I++++A D T++ +L G +DYL+KP RF ++L + Sbjct: 59 DGLGIDFLQQMRKLPNPPESILVTAANDVETVQKALRCGALDYLVKPLDYQRFAQSLEKF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L Q ELD L P TL+ + H + E S Sbjct: 119 ALVQHTLSHGISLAQGELDALFQKG-----VPSNKKSSTDAHTLKQILDEFY-HANVELS 172 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +A +IS+ + R+YL V L + +G GRP YR Sbjct: 173 VSAIAESFSISKSTARRYLDKGVEQGELEAFLAHGKVGRPTRIYR 217 >UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKA0_BACSK Length = 240 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 10/232 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD + A + + + F G A T + K+++ DL+LLD+ + Sbjct: 6 IGVLIVEDDPVAASVYEQLIQSKLDFTIVGKAETAKATKQLL--QVITPDLVLLDVQLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG+DLL + DVI+I+++ DA T+ ++ G Y++KP RF + L ++ Sbjct: 64 ANGIDLLFHIKQLDHHVDVILITASNDAQTVGEAKRGGAFSYMLKPIIVDRFFQTLEEYK 123 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNE-------QDPRRLPKGLTPQTLRTLCQWI-DA 173 + + + ++ +L H + + + LPKG+ TL+ + + + Sbjct: 124 AARTKGKPKSTDAERDIQRLFHHDKTGQPASNVGLRTSGPLPKGIDKHTLKNVEEALVHI 183 Query: 174 HQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + + +++ + S + R+YL +LV+ + + YG GRP RY+ Sbjct: 184 TESESLNAEQVGKRIGTSHSTARRYLEYLVSIGAVKVDVVYGHVGRPERRYK 235 >UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WAT4_BACSK Length = 247 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 129/234 (55%), Gaps = 7/234 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I V +I+DD VA +R +++++ GF+ G A TLE+ +I DL+LLD+++ + Sbjct: 17 IKVAVIEDDIDVARFHRLFLSKVAGFELIGEAHTLEQGVHLIQTQK--PDLLLLDVFVGQ 74 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 ENGLD+L + +DVI+I+SA DA T++ YGVVDYLIKPF +RF+EAL +R Sbjct: 75 ENGLDVLKRIRAEDTNTDVILITSANDAKTVQTGSRYGVVDYLIKPFSFARFQEALNRYR 134 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 L+ + + Q ++D+L+H ++ LPKG+ +T + + D + Sbjct: 135 A--SQLDANASFTQQDVDRLLHK--GGQRKVYALPKGIAKETAIRVLSCLIE-ADDSLAA 189 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLK 235 EL IS VS RKY+ + ++ + Y +GRP+ Y+ E LK Sbjct: 190 AELEARTEISHVSLRKYMRFFEEEQLVEKELVYQSSGRPLQTYKASPEAALFLK 243 >UniRef50_A4FB60 Two-component system response regulator n=4 Tax=Actinomycetales RepID=A4FB60_SACEN Length = 222 Score = 200 bits (509), Expect = 3e-50, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 121/225 (53%), Gaps = 11/225 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI V ++DDD VA+++ + ++P F+ G A + E+A+E++ + DL+LLD Y+ Sbjct: 1 MIRVAVVDDDFRVAQVHAEFTERVPDFKVVGVAHSAEQARELVDTRN--PDLVLLDNYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+ LL L D I++++A D A+++ +L G ++YL+KPF A + LT + Sbjct: 59 DRSGIALLAEL-----DVDAIMLTAATDPASVRAALAAGALNYLVKPFTAEQLGSRLTAY 113 Query: 121 RQKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + L DQ E+D+ + +E D PKG +P T + + + + Sbjct: 114 ARYRGRLPVTGGAVDQDEIDRAMR--LLHEGDRPAAPKGQSPLTSQLVLDAL-QRGESAR 170 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S E+A E+ I+R + ++YL L ++ YG +GRP ++Y Sbjct: 171 SAAEIAEELGIARATAQRYLAALAQDGKARMTLRYGASGRPEHQY 215 >UniRef50_C4X351 Two-component response regulator for citrate n=21 Tax=Bacteria RepID=C4X351_KLEPN Length = 233 Score = 200 bits (509), Expect = 4e-50, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 8/230 (3%) Query: 1 MIN-----VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILL 55 M++ VLII+D++ +A L+ V + P + G A++L +A++++ TP L+LL Sbjct: 1 MMHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLL--HATPPQLVLL 58 Query: 56 DIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEE 115 D Y+ G+ L+ A + VI I++A+D T ++ G DY++KP R + Sbjct: 59 DNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQ 118 Query: 116 ALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 +L + Q + + DQ +D L + N + KG+ +TL + + Sbjct: 119 SLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYR-VDSGSKGIEEKTLALVQGLFSDRE 177 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + FS DE+ + +S+ + R+YL V L + YG G P YR Sbjct: 178 AHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYR 227 >UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech586 RepID=D2BTF7_DICD5 Length = 215 Score = 200 bits (508), Expect = 5e-50, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 4/215 (1%) Query: 13 VAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVLH 72 +A ++ + P F G+A TL A+ + + DL++LD Y+ G+D++ L Sbjct: 1 MAFFIESFIRKHPEFLLLGSADTLADAR--LAIAAQKPDLVMLDNYLPDGTGIDMMKHLR 58 Query: 73 NARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQY 132 + + DVI I++A D TIK ++ +G DYL+KPF R EEAL + + + + Sbjct: 59 ATQPEVDVIFITAANDIETIKAAIRHGASDYLVKPFILERLEEALKNYLMFNRKVAQKSH 118 Query: 133 YDQAELDQLIHGSSSNEQDPRR-LPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNIS 191 Q E+D++I S + PKG+ TL + + + + + D L++ + IS Sbjct: 119 LQQDEIDRVIRQSIPHHVPAGFIYPKGIDELTLNQVRAAF-SGEHTQHTADSLSDMIGIS 177 Query: 192 RVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + + R+YL + N +L I +G GRP YR+ Sbjct: 178 KSTARRYLEYCKNIKLLEAHIQHGTVGRPQRFYRL 212 >UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ELH7_OCEIH Length = 222 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +NVL+ +DD VA+++ +Y+ + Q A+T + + + DL+LLD+Y+ Sbjct: 1 MNVLVAEDDYRVADIHCQYLEKFQDIQYIERAATAYETLAKL--KENKFDLLLLDVYLPD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 E G++++ +I+I++A D +K + GV+DYLIKP R +A+ Sbjct: 59 ELGINMIETYKQEHAALQIILITAATDIEMLKKAYLSGVIDYLIKPIALDRLADAINKAV 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + + Q DQL + + PKG+ TL+ + + + Q + Sbjct: 119 KNHQFIRSQGEFTQQLADQLFQNQQ-EIMEKQEYPKGIDELTLKKVNEVL-QKQSSGMTA 176 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 D++ ++ +SR + R+YL +L++ + YG+ GRP +Y Sbjct: 177 DQVGKDIGVSRTTARRYLEYLISVGKAKAELEYGIVGRPERKY 219 >UniRef50_C9Z825 Putative two component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z825_STRSW Length = 231 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 8/226 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +LI+DDD +V R V +I GF+ A T +A +L+LLD+++ Sbjct: 8 ITLLIVDDDPVVTTALRAQVNRISGFRVVAIAHTGREALAA--TRRFAPNLVLLDLHLPD 65 Query: 62 ENGLDLLPVLHN-ARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 GLD+ L +DVIVIS + ++ ++ ++ G + YLIKP + E+ L + Sbjct: 66 IPGLDVAHQLRRPDYPPTDVIVISGSRESTAVRAAMQRGALHYLIKPARTGTVEQTLLRY 125 Query: 121 RQKKMALEKH-QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 L +Q +D++ S D P G++P T + + + A + Sbjct: 126 AAASAHLSAGASMVEQRAIDRVFR---SLHLDAVVRPTGISPATEQVVLDAL-AAAGRDL 181 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 S E A V ISR + R+YL L + + S+ YG++GRP +RYR Sbjct: 182 SAHETAEAVGISRATARRYLEHLADRGEVVASLRYGLSGRPQHRYR 227 >UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6T7_VIBME Length = 228 Score = 196 bits (500), Expect = 3e-49, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 112/225 (49%), Gaps = 5/225 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+++I++DD + + + F G A + + A+ II LILLD Y+ Sbjct: 4 IDIVIVEDDVNITNIYLDIIQGFSRFTVVGIAESQKIARTII--QAYQPQLILLDNYLPD 61 Query: 62 ENGLDLLPVL--HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 G+DL + + K DV++I+++ D T+++++ G DYL+KP RF++ L Sbjct: 62 GLGIDLYRDILAQKKKRKQDVVLITASDDVNTVQEAMQLGCFDYLLKPISFDRFQQTLQR 121 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + A++ + +Q +D+L + +Q LPKG+ TL + + + + +F Sbjct: 122 YLDLNNAMKAYDNLNQKYIDELFNIQHRKQQV-SLLPKGIEQITLDKIIRLLSLNNGDKF 180 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + ++++ +S+ + R+YL + ++ + YG GRP Y Sbjct: 181 TVEKVSLHTGVSKTTARRYLEYCATHGLIISENEYGKVGRPERVY 225 >UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococcus casseliflavus RepID=C9AYP4_ENTCA Length = 227 Score = 196 bits (500), Expect = 4e-49, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 130/229 (56%), Gaps = 6/229 (2%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 N+LI++DD MV ++R Y+ ++ F+ + T+E+A+E++ I+L+LLDI+++ Sbjct: 4 NILIVEDDPMVQFIHRSYLERLAVFERIFSVETVEEAQEML--QKETIELLLLDIHLKDG 61 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 NGL+LL L + DVI+I++A + I SLH G++DYLIKPF RF +++ ++Q Sbjct: 62 NGLELLQTLREQQQAVDVIMITAADETRLISQSLHLGMLDYLIKPFSFERFAQSIQVFQQ 121 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 ++ +L KH Q ++D L+ G+ + L KGLT TL+ + + I + F+ Sbjct: 122 RRESL-KHPRIAQQQIDLLLQGNQKSPWI--ELEKGLTEDTLQLIQETIRTIK-QPFTVQ 177 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHY 231 ELA +S VS RKY+ L + + Y GRP +Y + + Sbjct: 178 ELAQACALSHVSVRKYVAHLEKTKAIRSENVYTKIGRPYKQYFLITDKE 226 >UniRef50_C8NS01 Two component system response regulator n=6 Tax=Actinomycetales RepID=C8NS01_COREF Length = 218 Score = 196 bits (498), Expect = 7e-49, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 14/223 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL++DDD VA+L+ V PGF GTA T+ +A+ +F ++ P+DL+L DIY+ Sbjct: 5 LQVLVVDDDFRVADLHAAAVEAAPGFTVVGTARTVAEAR--VFLAEHPVDLLLADIYLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ L D ++S+A D T++ +L G + YL+KPF + L + Sbjct: 63 GDGITLARA-----SDVDAFILSAADDVPTVRRALRAGALAYLVKPFPQRVLIDRLDRYA 117 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + L Q Q ++DQ + + Q P + + T Q L +DA D E S Sbjct: 118 RYRHVLSGSQGLSQEKVDQAL-AILNGAQAPTPVSRSATEQLL------LDALGDGELSA 170 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 E A +SR + ++ L + + ++ + YG +GRP + Y Sbjct: 171 SEAAELAGVSRATAQRRLAAMASSGLVQVRLRYGQSGRPEHLY 213 >UniRef50_Q8NU70 Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=2 Tax=Corynebacterium glutamicum RepID=Q8NU70_CORGL Length = 218 Score = 194 bits (494), Expect = 2e-48, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 14/223 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL+IDDD VA ++ V PGF GTA TL +AK +I + DL+L+D+Y+ Sbjct: 5 LKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLI--ATFSPDLLLVDVYLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+DL+ D V+S+A D T++ ++ G + YL+KPF R E L + Sbjct: 63 GDGIDLVGT-----SNIDAFVLSAADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDRYV 117 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + L Q Q ++DQ + Q P + + T Q L +DA + E S Sbjct: 118 RYRHVLSGTQGLSQDKIDQA-TAILNGTQAPVTVSRSATEQLL------LDALEGQELSA 170 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 E + +SR + ++ L + + ++ + YG +GRP + Y Sbjct: 171 TEASEAAGVSRATAQRRLAAMASQGVIQVRLRYGQSGRPEHLY 213 >UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S8J9_9ACTO Length = 228 Score = 193 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 113/232 (48%), Gaps = 7/232 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL+++++A A+L +V ++ F AST A + +DL+LL +++ Sbjct: 1 MRVLVVENEATTAQLLVGHVQRLRDFAVTEQASTGADALRRLAPGH--VDLVLLGVHLPD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 + LDLL L A C V+ +++ D + I+ +L +GVV YL+KPF + E L + Sbjct: 59 MSWLDLLRTLRGAGCTVGVVAVTATHDLSVIRTALAFGVVHYLLKPFTFTSVREQLEKYE 118 Query: 122 QKKMALEKHQYYD-QAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD-YEF 179 + + Q E+DQL+ + D RLPKG++ ++L+ + + Sbjct: 119 AYRSLRNVGELVLVQQEVDQLLGVL--RDADENRLPKGISRESLQAVTAALKRCSGLGGV 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY-RIQAEH 230 S E+A + ISRV+ R+YL +LV+ Y GRP Y + + Sbjct: 177 SAAEVARALGISRVTTRRYLEFLVDKGAAHRRARYRGPGRPELEYVWLSPDA 228 >UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillus thuringiensis RepID=C3DC45_BACTU Length = 231 Score = 193 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 10/233 (4%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA +N++++ + G + + + + II + DLILLD+Y+ E G+D L + Sbjct: 1 MVAMINQQFIGRFKGLRIIASVGNIGELWNII--NKNVPDLILLDVYLPGETGIDFLQTV 58 Query: 72 HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQ 131 + +I+I++A D TIK SL YGV+D+LIKPF RFE A+ + Q K + Sbjct: 59 RQKQLSIPIIMITAAHDIPTIKKSLEYGVIDFLIKPFSYERFELAIENFLQYHSLTTKLE 118 Query: 132 YYDQAELDQLIHGSSSN-------EQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDEL 184 DQ LDQ++ ++ ++ KGL+ TL+ + I + Y FST+++ Sbjct: 119 ETDQDTLDQILIKERVPSLVNPACKELSSKISKGLSKITLKKILHVIVKQEGY-FSTEDI 177 Query: 185 ANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 +V++SRVS +KYL++L L + Y GRP+ + + E L+ + Sbjct: 178 TKKVDLSRVSTKKYLLFLNEIGYLSEELKYLAVGRPITVFHVVPEKEHLITSF 230 >UniRef50_UPI000050FA19 putative two-component response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FA19 Length = 232 Score = 193 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 12/233 (5%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPID-----LILLDIYM 59 L+++D+A+ A + +Y+ +I G+ G A +A + +D L+LLD+ + Sbjct: 2 LVVEDEAVAARAHAKYIDRIDGYHLAGVAKNATQAMAALTGKIYGLDADCINLVLLDMNL 61 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL + + R D+I +++A D ++++L YGV Y+IKPF F+ L Sbjct: 62 PDGHGLQVCRAIRGHRVDVDIIAVTAARDMQIVQEALSYGVAQYIIKPFTFPVFKSKLEA 121 Query: 120 WRQKKMAL---EKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + + +L Q ++D I ++ KG+ + + Sbjct: 122 YSSYRNSLGGDSTEGEVTQTDVDTAI--AALRTHTVTATAKGVPDAVQAEVKSVLGDKPG 179 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 S E+A + +SRV+ R+YL + + +L YG GRPV Y + A+ Sbjct: 180 Q--SAAEVAEGLGVSRVTARRYLEAMADAGMLNRRPRYGAAGRPVLEYTVVAD 230 >UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WFB7_FUSMR Length = 220 Score = 192 bits (488), Expect = 9e-48, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLI++DD MVA +N Y++ + G T + + + +DLI+LD+++ Sbjct: 1 MKNVLIVEDDPMVAMINEEYLSSFQNIKVLGRTFTEKDTLDFLTTHK--VDLIILDVFLG 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +ENG+++L + +DVI+I+SA IK + +G +DYLIKPF R + ++ Sbjct: 59 EENGIEILKKIRTLGYTTDVIMITSANGGEDIKKAFSFGCIDYLIKPFDFERLKISIDKI 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L K + Q +D + SS LPKGL +TL + Q I + EF Sbjct: 119 FTRDEILNKSK-VKQDSIDNIHSTPSSL-----NLPKGLNSKTLEKVTQIISNLPNEEFG 172 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 ++ +IS V+ +KYL +L N + + +YG GRP+Y Y+ Sbjct: 173 IKDICQITDISNVTIKKYLDYLENIKYITSFTNYGNIGRPLYLYK 217 >UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacillaceae RepID=B1HPQ0_LYSSC Length = 273 Score = 191 bits (486), Expect = 1e-47, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 108/220 (49%), Gaps = 13/220 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 INVL+I+DD MV E+NR+++ QI GF G AS + + I +L+ +DI+M + Sbjct: 4 INVLLIEDDPMVREVNRQFIEQIKGFSLVGYASNGIEGIQKI--KQLTPELVFIDIFMPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 ++G+ L + DVI +++A D T++ LH GV DY++KPF R E+ L +R Sbjct: 62 QDGIITLGKIREEHLPVDVIAVTAANDMPTVQRILHLGVYDYIMKPFTFERIEQTLKNYR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQ----------DPRRLPKGLTPQTLRTLCQWI 171 + + Q Q ++D L+ + LPKG TL + +I Sbjct: 122 SYRKKISGMQDLTQHDVDHLMQQRLPEQVVITTAGTEAITIEELPKGFNRATLDKVFAYI 181 Query: 172 DAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTS 211 S +E++ + +RV+ R+YL +L + + Sbjct: 182 -QTSGGAVSAEEVSTYIGTARVTARRYLDFLEKPKSIKSR 220 >UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYA0_9BACL Length = 226 Score = 189 bits (480), Expect = 7e-47, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 134/231 (58%), Gaps = 9/231 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLII+DD MVA +++ Y + +++E A+E + N+D +DLI+LD Y+ Sbjct: 1 MRVLIIEDDPMVAMIHKEYFKKKELTDDLNHVTSIEDAREYLANND--VDLIVLDNYLID 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G++ LP L +I+I++A D T++ +L GVVDYL+KPF RF +A+ + Sbjct: 59 GQGIEYLPELKGY----PIIMITAANDVQTVEAALSNGVVDYLVKPFTYERFAQAIDKVQ 114 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 L K + +Q +D+ ++ S E+D LPKGL+ TL+ + + I H + F+T Sbjct: 115 DYVKLLSKEK-INQDLIDEYLN-SGRIEEDEDNLPKGLSRITLKKVLEAIKQH-NSGFTT 171 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYS 232 ++A++++ISR++ RKYL LVN +IL Y +GRPV + + +E Sbjct: 172 QQIADKLDISRITIRKYLNHLVNINILSEDAEYYTSGRPVSVFTVVSESRL 222 >UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteobacteria RepID=A1REF6_SHESW Length = 225 Score = 189 bits (480), Expect = 8e-47, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 +II+DD + + Q P F+ + T + A ++ L+ +DI + +G Sbjct: 1 MIIEDDPKASYALESIIHQHPDFEVVVVSETYQDA--LMHYDLYKPQLVFVDITLPDGSG 58 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 ++++ L + I+ ++ +A T++ + GV DYL+KP + SR +AL ++ + Sbjct: 59 INVIKQLRSQGANCYFIMTTAEREATTVEQVVQLGVSDYLVKPLRMSRVRQALDDYKLYR 118 Query: 125 MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDEL 184 L H+ DQ +D ++ ++ RR PKG+ TL TL + Q EFS D++ Sbjct: 119 QKLACHETMDQCVIDHILGKRTNLPM--RRTPKGIDANTLDTLKDILRKEQLTEFSGDDI 176 Query: 185 ANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 ++ +N+SR++ R+YL +L + ++ ++Y GRP Y++ Sbjct: 177 SDRMNVSRITIRRYLEYLESEGVIKMVLNYKTGGRPSRVYQL 218 >UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammaproteobacteria RepID=A4VGG4_PSEU5 Length = 241 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 130/226 (57%), Gaps = 4/226 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLI++DD MV LN Y+A++ G + G +++ A E++ + + L+ + + Sbjct: 5 LRVLIVEDDPMVMRLNVDYLARLDGIELVGQCASVPAALELLADETVDLLLLDVYLR--N 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL++L L +D ++I++A++ T++ + GV DYL+KPF RF +A+ R Sbjct: 63 RSGLEVLRYLRAEDRNTDAVLITAASEIETVRAAQRLGVRDYLVKPFSFERFRDAVESCR 122 Query: 122 QKKMALEK-HQYYDQAELDQLIHGSSSNE-QDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + AL + + Q ++D+L ++ + + P LPKGLTP +L + Q I A ++ F Sbjct: 123 RARDALSRLPEQLGQGDIDRLFSQPAAADVRRPGDLPKGLTPASLAQVAQAILALEEDSF 182 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +++ L +SRVS RKYL L + +L S HYG GRP +RYR Sbjct: 183 TSENLLTATGMSRVSVRKYLKHLTDAQLLEESFHYGQIGRPSFRYR 228 >UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacillales RepID=B9DS01_STRU0 Length = 227 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 9/231 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +NVLII+DD MV ++R Y+ +I FQ ++ ++ AKE + I LILLDI+++ Sbjct: 1 MNVLIIEDDPMVDFIHRNYLEKINHFQNILSSDSISDAKEKLV--QFSIQLILLDIHIKD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGL+LL + +VI+IS+A D IK H+G++DYLIKPF RFEE++ + Sbjct: 59 GNGLNLLEYIRANHINCEVIIISAANDGNIIKTGFHFGIIDYLIKPFTFDRFEESIRRFF 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLP-----KGLTPQTLRTLCQWIDAHQD 176 + L Q+ +D L S+++Q KGL+ T + + I Sbjct: 119 DHQKQL-NQMVIKQSAIDFLKSQQSNDKQAITNKTNLLLEKGLSQDTYQLIIDAI-QRLS 176 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 F+ +L E +S VS RKY+ ++ + L + Y GRP Y+IQ Sbjct: 177 KPFTIQDLTEETCLSHVSVRKYIAYMEENNQLVSEQIYTKVGRPYKVYQIQ 227 >UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinococcus deserti VCD115 RepID=C1CYN9_DEIDV Length = 219 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 12/224 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI++DD +A+L+RR + + GF+ G+A TL A+ + + DL+LLD+++ Sbjct: 6 IRTLIVEDDPQIADLHRRLLERAGGFEVLGSAETLRIARAM--SRTLRPDLLLLDVHLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 GLDLL L + D +++++A+DA++++ +L +G DYL+KP RF AL R Sbjct: 64 GRGLDLLRELRLEGAQVDAVLVTAASDASSVQSALLHGAADYLVKPATPERFALALERVR 123 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + AL + Q LD L GL +TLR + + + Sbjct: 124 E-RAALWAQRDVRQGHLDALFT-------PLADDASGLDAETLRRVRAALRD--GAAHTA 173 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 E+ + +SRV+ +YL +L + + GRP RYR Sbjct: 174 QEVGQALGLSRVTAWRYLEYLTAQGEVSAAADARSVGRPAKRYR 217 >UniRef50_Q0RQX5 C4-dicarboxylate two-component system response regulator n=13 Tax=Actinomycetales RepID=Q0RQX5_FRAAA Length = 233 Score = 186 bits (474), Expect = 4e-46, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 4/230 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI+D DA +AE V QIPGF G + +A E + + L+ L + Sbjct: 6 IRTLIVDGDARLAEQEGGIVDQIPGFTVVGIVHSGAEALEFVSRGHPQLVLLDL--LLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+++ L + D+I ++SA+D AT++ +L YGV YL+KP A+ + L + Sbjct: 64 TTGVEVCRTLRSRGAALDIIAVTSASDLATVRAALSYGVAQYLVKPLSAATLRDRLHRFA 123 Query: 122 --QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +++A + Q E+D+ + PKG++ TL ++ + A Sbjct: 124 AAHRQLATATPHHLSQGEVDRALAALRPAVAPIADQPKGVSATTLDSVVAQLRARAGRPA 183 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 S +++A + +SR + R+YL L + S YG GRP YR Q Sbjct: 184 SAEDIAAAIGVSRATARRYLEHLAVHRLAIRSHRYGRCGRPGNLYRWQGA 233 >UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8F3_GORB4 Length = 233 Score = 185 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 10/225 (4%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 VLI+DDD+ VA L+ V + GF+ TA ++ A+ + + +DL LLD+Y+ + Sbjct: 19 VLIVDDDSRVAALHAAIVEAMRGFRVAATAGSIAGARAALAD-HPHVDLALLDVYLPDGS 77 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 G+DL+ L D V+ + DAA ++ ++ G + YLIKPF + L G+ Q Sbjct: 78 GIDLVGDL-----PCDCFVVGAETDAAAVRTAMRSGALAYLIKPFDDAELARRLAGYAQY 132 Query: 124 KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 + L+ ++ DQ +D + + R G +P R L + A D D+ Sbjct: 133 RRVLDA-EHVDQRAVDGALSALRFGTRPADRDDPG-SPTEKRILE--LFAAADGPLFADD 188 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 ++ + ++ + R++L LV L ++ YG TGRP YR+ Sbjct: 189 VSAAIGVAAPTARRHLANLVAAGKLSMTLRYGTTGRPRQEYRLAP 233 >UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF749E Length = 221 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 13/223 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 ++VL++DDD VA ++ VA +PGF GTA+T+ A+E +DL L+D+Y+ Sbjct: 6 LSVLVVDDDFRVANMHAGVVAAMPGFTVTGTANTVAAAREA-----PAVDLALVDVYLPD 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+D + L + D +++++A +A T++ ++ G + YL+KPF + L+G+ Sbjct: 61 GSGIDFVRELRS-----DSMILTAATEAETVRAAMAAGALSYLVKPFPTTELAARLSGYA 115 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + L ++D + + +P T + + Q + Q S Sbjct: 116 RYRKIL-AGANLSARDVDAALDALRPRLAPAQSSATAASP-TKQLVLQALKTSQ-TPMSA 172 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 E+A + ISR + ++YL + + + + YG TGRP + Sbjct: 173 AEVAAAIGISRATAQRYLAAMASSGDVSVGLRYGATGRPEQEF 215 >UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B832_THEAS Length = 225 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 12/227 (5%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 LI +DD MV+ + R V + F G A +A E I +DL+LLD+ M + Sbjct: 5 RTLITEDDPMVSFIIGRLVNSLGDFLLVGQAQNGREALEQIRAHK--VDLVLLDLSMPEV 62 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR- 121 +G +++ + N SDVI+I+S+ A ++L G DY++KPF R +L ++ Sbjct: 63 DGKEVMLTIRNEDLDSDVIIITSSYRKADAVEALRLGAWDYIVKPFSYDRLRVSLDSYKD 122 Query: 122 --QKKMALEKHQYYDQAELDQLIHGSSS-NEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 + + +L Q +LD++ + S N + +G T Q + + + ++ Sbjct: 123 AFRYRASLPAE--LAQEQLDRVFYPESRLNLYSTSGIQRGDTAQRIMDVL----SQEERP 176 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 S E+A+++ ISR++ RKY LV+ L HY GRP+ +Y+ Sbjct: 177 LSAGEIADKIGISRITVRKYCEALVSTGRLIAQNHYQPKGRPIKKYQ 223 >UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I404_DESAP Length = 224 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 5/228 (2%) Query: 1 MI-NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI +++D D ++ E + ++ +PG + + A E++ +T + L+ L + Sbjct: 1 MILKAVVLDSDPVMLEAHEDVLSLVPGCMVVLSTVSARSALEVLCGDETVLLLLEL--KL 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+LL + DVIV++ A DA T++ +L G+ DY+IKP++ R + ++ Sbjct: 59 SGADGLELLREIRRQGLPVDVIVVTGAEDAGTLEQALRLGIFDYIIKPYRRHRLKSSVES 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + L Q +QA +D + N +LPKGL T+ + ++ Sbjct: 119 YAAMYVTLCGKQAVNQAWVDDHVFRRFPN-LPADKLPKGLHRLTMEQVVLFL-GENIAGV 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 S +E+A + SR + R+YL +L + + YG GRP +YR+ Sbjct: 177 SAEEVARGIGFSRATARRYLEYLARNGLARPDLEYGSIGRPTTKYRLV 224 >UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodococcus sp. S9 RepID=Q9L4T4_9NOCA Length = 237 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 11/210 (5%) Query: 19 RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVLHNARCKS 78 ++ + ++ A+++ +A+E++ DL L+D+Y+ +G+DL+ L Sbjct: 37 HHLNSLDQYEVAAVATSIAQARELLTTQ--SFDLALVDVYLPDGSGIDLVREL-----PC 89 Query: 79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAEL 138 D +V+S+AAD AT++ ++ G YLIKPF S + LTG+ + AL++ QA++ Sbjct: 90 DAVVLSAAADQATVRSAMTAGAWTYLIKPFPRSALVDRLTGYLGYRGALDRSDELTQADI 149 Query: 139 DQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKY 198 D + P + +T R L S E+A + ISR + ++Y Sbjct: 150 DGGLDALRPRAAAPLPASQSVT----RDLVLDAVRGTAEPMSAGEVAAAIGISRATAQRY 205 Query: 199 LIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 L LV+ L + YG TGRP Y + Sbjct: 206 LATLVSKGRLRMQLRYGSTGRPEQEYSLPP 235 >UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6P1_THEAS Length = 224 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 115/227 (50%), Gaps = 10/227 (4%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 +LI +DD + L + ++ + G G + E+ F +L+LLDIY++ N Sbjct: 6 LLIAEDDPSMVRLYKAFLQGVEGVSLLGVTPSGEELLRY-FRRGGRAELLLLDIYLEGSN 64 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 G+D+L L DVIV++S + T+ +++ GV DYL+KPF SRF AL Sbjct: 65 GVDILRELRGMGVDLDVIVVTSESSPRTVGEAMRLGVFDYLVKPFGGSRFGRALDDLVAF 124 Query: 124 KMALEK-HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 + +++ + Q ELD+L+ G LPKGL TL+ + + + + D Sbjct: 125 RRRIDRVNSRMSQDELDKLLGGGE------EELPKGLHRSTLKGILSLLSCFGEA--TVD 176 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 L+ E+ +S+ S R+Y+ +LV + + + GRPV YR+ ++ Sbjct: 177 RLSEEMGLSKSSVRRYMDYLVREGEVELRLKHLGRGRPVNVYRLPSD 223 >UniRef50_UPI0001BC2D80 two-component system response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D80 Length = 218 Score = 180 bits (456), Expect = 5e-44, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 9/226 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVL++DDD V +++ RYV ++ GFQ L A+ II ++ +DL+L D + Sbjct: 1 MINVLVLDDDFYVGQIHCRYVNEVAGFQALEPVRDLRTARTII--AEEQVDLLLADYVLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + NG++L+ D IV+S+ D ++ +L G + Y+ KPF A ++ L + Sbjct: 59 EGNGVELIRE-----TDVDAIVLSAVTDPDVVRSALRAGAMTYIFKPFAAEELQDFLRRY 113 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + ++ + Q +L++ + KG T + + +++ D + Sbjct: 114 ARFRRYWDREK-VSQPDLERQLRSLHDVASPGSAPAKGSGSSTSGRILEALES-ADQPLT 171 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 E++ V SR + +++L L + S+ YG TGRP + Y + Sbjct: 172 AMEVSEVVGTSRATAQRHLAKLAESRAVTVSLQYGSTGRPEHLYGM 217 >UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAH6_GORB4 Length = 237 Score = 179 bits (455), Expect = 6e-44, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEI---IFNSDTPIDLILLDIY 58 + VLI++D+ ++A+ +R ++ +I GF+ T ++A + S TP+DL+LLD+ Sbjct: 7 LRVLIVEDEPLIAQAHREFLRRIGGFEVIAAVRTGQEALRVAGSAAASATPVDLVLLDLG 66 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + G+D+ L R D+I I++ + AT++ ++ +GV+ YL+KPF + FEE + Sbjct: 67 LPDARGVDVASALSGLRPDPDIIAITAQRELATVRTAMSHGVLLYLLKPFTFAAFEEKIG 126 Query: 119 GWRQKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 +R+ + AL Q ++D+ + R + KG P+T + + + Sbjct: 127 QYRRYRQALSGAGDAVSQRDVDRAVS-ELRTTSTRRTVKKGAVPETEDAVGRAVR-DSTG 184 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + ++A + SRV+ +YL L + +L YG TGRP RY Sbjct: 185 GLTASDVAGLLGSSRVTAWRYLERLADDGVLDRVTEYGNTGRPQVRY 231 >UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepID=C2JJ49_ENTFA Length = 230 Score = 179 bits (454), Expect = 9e-44, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 133/231 (57%), Gaps = 10/231 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +N+LII+DD MVA ++++Y+ ++ T +T+ + ++ + L+LLD++++ Sbjct: 1 MNLLIIEDDPMVAYIHQKYLEKLIHQPTIFTVATIAEG--LLLTKEKQPALVLLDVHLKD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGL L + + + ++VI+I++A + +K SLH GV+DYL+KPF RF++++ ++ Sbjct: 59 GNGLTYLATIRDEKIDTEVILITAANELENVKRSLHLGVLDYLVKPFSFERFQQSIENYQ 118 Query: 122 QKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRR------LPKGLTPQTLRTLCQWIDAH 174 +K + + Q ++DQL H S +N + + L KGLT TL+ L + ID Sbjct: 119 KKTAQFTLETKELSQTKVDQLFHYSQTNARKNEQALQNMSLEKGLTQATLQLLLKKIDEF 178 Query: 175 QDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 DY F+ EL+ +S VS RKY+++L ++L + Y GRP YR Sbjct: 179 TDY-FTIQELSEASQLSHVSVRKYVLFLEKNNLLESKNSYLKVGRPYQSYR 228 >UniRef50_B1W048 Putative two-component system response regulator n=13 Tax=Streptomyces RepID=B1W048_STRGG Length = 224 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 7/231 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL+++DD + A+ ++ YV ++ GF A T A + TP+DL+LLD+Y+ Sbjct: 1 MIRVLVVEDDPVAADAHQMYVERVEGFTVTAVAHTRAAAVRAL--ERTPVDLLLLDLYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL LL L + +DVI ++SA D A +++ + GVV Y++KPF + L + Sbjct: 59 DGHGLGLLRSLRASGHGADVIAVTSARDLAVVREGVSLGVVQYVLKPFTYPTLRDRLVRY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + A + Q E+D+ + P LPKGL+ TL + + + + Sbjct: 119 AEFRGA--AGEASGQEEVDRALGAL--RVAHPAALPKGLSGPTLEAVTGVLKESPE-GVT 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHY 231 + ISR++ R+YL LV HYG GRP YR A Sbjct: 174 AAAAGERLGISRITARRYLEHLVTVGSAARRPHYGQVGRPELHYRWLASGR 224 >UniRef50_UPI0001C32222 response regulator receiver and unknown domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32222 Length = 230 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 9/224 (4%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VLI +DD VA L+R + + P F+ G A E+ + DL+LLD+ ++ Sbjct: 5 RVLIAEDDPDVARLHRLLIERHPAFKAIGVAEAGEQVLR--DVATQRPDLVLLDLELRGM 62 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +GL++L + +VI +++A D ++ + G+VDYL+KPF R AL + + Sbjct: 63 DGLEVLSWMRRLAYDVEVIAVTAADDREIVRRMMRLGIVDYLVKPFTPERMRVALARFSE 122 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 + L + + R LP+GL TL L Q + AH ST Sbjct: 123 RVAGLPGSTVTQ-----AAVDAALGAADARRLLPRGLQADTLDRLRQEL-AHAGEWLSTQ 176 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIH-YGVTGRPVYRYR 225 EL V+++ V+ R+YL +LV T + YG GRP YR Sbjct: 177 ELGGRVDVAAVTVRRYLEYLVVNQEAVTRLDGYGSPGRPRKLYR 220 >UniRef50_C2ASC2 Response regulator of citrate/malate metabolism n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2ASC2_TSUPA Length = 220 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 11/225 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL++DDD VA ++ + V +PG G+A T+ +A+ +I +DL L+D+Y+ Sbjct: 6 IRVLVVDDDFRVAAMHAKIVDTMPGLVTVGSARTVSEARAVIARE--RVDLALVDVYLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+DL+ L D ++ +A DAA+I+ G + YLIKPF A+ + G+ Sbjct: 64 GSGIDLVRELR-----CDAFILGAADDAASIRAGFAAGALQYLIKPFPATELARRIGGYT 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + ++ Q ++D S P+R G T R + + Sbjct: 119 SYRRIVDG-GAITQEQIDAAASALRSERVVPKRDDGGSV--TERRIVDALR-DAGSPLLA 174 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 DE+A V +S + R+YL V L ++ YG TGRP RY + Sbjct: 175 DEIAERVGVSPATARRYLADQVRAGTLTMALQYGTTGRPRQRYAL 219 >UniRef50_B2GLU0 Putative CriR family two-component response regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GLU0_KOCRD Length = 218 Score = 178 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 12/223 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLIIDDD VA L+ YV +PGF+ L + + DL+L+D+Y + Sbjct: 4 LRVLIIDDDFHVAALHVGYVNAVPGFEALPPVHDLRAVAAAV--EEHRPDLMLVDVYFPQ 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GLD+L + D V+S+A++ AT+ + G + YL+KPF+ + L + Sbjct: 62 GSGLDVLRAV-----DVDAFVLSAASERATVAAAFRRGALAYLLKPFEPEVLKAKLRAYA 116 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + L+ Q+ +D+ + ++ P T + E + Sbjct: 117 RYRRQLDAPGPLSQSAIDRARRAMTGSDDAPAGTAASATESAVADAVA-----DGGEVTV 171 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 ++A V ISR + ++YL +V + + YG GRP +RY Sbjct: 172 MDVARAVGISRATAQRYLSQMVQRGAVQLELRYGSRGRPEHRY 214 >UniRef50_C4TWB2 Transcriptional regulatory protein dcuR n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TWB2_YERKR Length = 162 Score = 169 bits (428), Expect = 9e-41, Method: Composition-based stats. Identities = 77/150 (51%), Positives = 112/150 (74%) Query: 8 DDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDL 67 DDDAMVAELN+ Y+ Q+ GF CCG+ S+L++A++ + ++ PIDL+LLD++M+++NGLDL Sbjct: 2 DDDAMVAELNKCYLNQVAGFNCCGSVSSLQQARDHLMAAEHPIDLVLLDVFMRQDNGLDL 61 Query: 68 LPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMAL 127 LPVL +DVIVISSA D TIK +L YGVVDYLIKPFQ SRFEEAL+ +R+K+ L Sbjct: 62 LPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALSTYREKQSLL 121 Query: 128 EKHQYYDQAELDQLIHGSSSNEQDPRRLPK 157 + +Y Q ++D L+ S+ + +++ + Sbjct: 122 GQREYCAQEDVDSLLRRSNVTPAERKKIAQ 151 >UniRef50_UPI00017896CE two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017896CE Length = 261 Score = 159 bits (404), Expect = 5e-38, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 101/238 (42%), Gaps = 22/238 (9%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ L++DD+A + + + + G + G A + +A E+ DLIL DI M Sbjct: 1 MLKALLVDDEAPILNNLSKVLPWEEMGMKVVGLARSGMEALEV--ADQYNPDLILCDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL + + ++++ +++ + ++++ GV DY+ KP E + Sbjct: 59 PVMDGLTFITKIREKGSRAEIFLLTGYQEFEYAREAIKLGVKDYISKPIHYGELEMKIRE 118 Query: 120 W-RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 + + K +YY+ L + N + ++ P+ L L ++I+ H + Sbjct: 119 IGEEIRKKRAKEKYYNTVSL----IDEAPNPEAVKKTPEQLVSSAL----EYINTHMGQD 170 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQ 236 +EL+ + IS Y L H+ T + Y + R R++A + L+ Sbjct: 171 LGIEELSEHLGIS----SSYFCLLFKNHVGLTFVEY------LTRQRMEAAKFLLVNS 218 >UniRef50_UPI00016939E4 two-component response regulator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016939E4 Length = 321 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 2/153 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 VL+I+DD MV E+NR+++ ++ GF+ GTA+T + ++ + DLI LDIYM Sbjct: 10 YTVLLIEDDPMVQEVNRQFIERVEGFRVIGTAATGSEGLRLV--RELEPDLIFLDIYMPS 67 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 ++G + L L DVIV+++A DA TI+ + G+ DY+IKPF+ R +AL +R Sbjct: 68 QDGTEALRKLRAEALPVDVIVVTAAKDAPTIRQMIRKGIRDYIIKPFKFERVRDALEQFR 127 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRR 154 AL Q ELD+++H + + Sbjct: 128 AHHTALMAEGTLSQVELDEILHRTGERSGEYSE 160 Score = 84.9 bits (209), Expect = 2e-15, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQ--DPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 R K +E A + I + E+ D LPKGL P T+R + ++ Q Sbjct: 209 RDKAALVEGKPGIKTAGIQSAIAENQPLEKFPDLSNLPKGLNPATMRQIIYFVRQ-QKKA 267 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S +E+A+ V I+RV+ R+YL +L + I YG GRP+ RY Sbjct: 268 LSAEEVADGVGIARVTARRYLDYLEKSRQVRLVISYGGIGRPINRY 313 >UniRef50_C6D416 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D416_PAESJ Length = 513 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 3/165 (1%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL++DD+ + E V G + G+A E+A E + + P+DL++ DI M Sbjct: 1 MYKVLLVDDEPFITEGLSDAVDWSAFGLEVVGSAEDGEEALERL--RELPVDLLITDISM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 GL+L+ + + VI++S + +K+ + G+ +YL+KP E LT Sbjct: 59 PIMTGLELIRKARELQPQLKVIILSGFNEFNYLKEGMRLGIENYLLKPINFGELEATLTD 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTL 164 +K A + + + E+ L + + R LT +T Sbjct: 119 TVRKLEADKPEKPLGEDEIGILRDNVMTRWVNGRIALPELTERTA 163 >UniRef50_C6CWR9 Two component transcriptional regulator, AraC family n=2 Tax=Paenibacillus RepID=C6CWR9_PAESJ Length = 540 Score = 146 bits (370), Expect = 4e-34, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 3 NVLIIDDDAMV-AELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 VL++DD+ + L + ++ G GTA +A E++ DL+L DI M Sbjct: 4 KVLLVDDEPHITRNLEKVIPWEMLGLTVGGTAKNGVEALELL--ESESFDLVLCDIRMPV 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+L+ + +SD+I++S D A + ++ YGV DY++KP + Sbjct: 62 MDGLELVRHIREKGTESDIIMLSGYQDFAYTRAAIQYGVKDYVLKPIPYDELTGVIARVM 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSN 148 + +K Q +Q ++ ++I +S Sbjct: 122 ANQRQKKKQQSEEQQKIGRMIDLASEK 148 >UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG61_9FIRM Length = 533 Score = 146 bits (369), Expect = 6e-34, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 10/169 (5%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V+I DD+ V L ++ V + G A +A E+I DL++ DI M Sbjct: 1 MMRVVIADDEEKVCLLIQKLVDWTAMDMEIVGVAHNGLEALELI--ETRRPDLMITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT- 118 +G++L+ + I++S + +L YG DYL+KP + L Sbjct: 59 PGCDGIELIRRARQLDPALEFIIVSGYRHFEYAQSALKYGAGDYLLKPIKKDELTATLEK 118 Query: 119 ---GWRQKKMALEKHQYYD---QAELDQLIHGSSSNEQDPRRLPKGLTP 161 W ++ L + + Q++LD+L G + RLP GL Sbjct: 119 MHGRWLRRTEQLSREEQMRLRLQSDLDRLRSGMFGDLLSGVRLPDGLEA 167 >UniRef50_A7VVZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVZ1_9CLOT Length = 531 Score = 145 bits (367), Expect = 9e-34, Method: Composition-based stats. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DD+ V E +R + Q G G A +A II D D++LLDI M Sbjct: 1 MYKLLIVDDEKQVREGLKRLLPWQDYGITIIGEAINGREALGII--EDQRPDIVLLDIQM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 NGL+L +H + IV+S D A +++++ YG VDYL+KP Sbjct: 59 PVMNGLELAKRIHGQYPECKFIVLSGYNDFARVREAMKYGAVDYLLKP 106 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 24/238 (10%) Query: 1 MI--NVLIIDDDAMVAELNRRYVAQ-IPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDI 57 M +L++DD+ E +R + + G TA+ ++A I+ + ++L DI Sbjct: 1 MYEKTILVVDDEPRAREGMKRVLEKWASGKHRIITAANGQEALAIL--RQERVHVLLTDI 58 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 M + GL++L + VI+IS+ D + ++ GV++YL+KP + S EA+ Sbjct: 59 RMPEITGLEVLEGMRENEDSPVVIIISAYPDFDYAQKAISLGVLNYLLKPVKKSELFEAV 118 Query: 118 TGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 E+ + Q D+LI+ + Q T + +R Q+ID Sbjct: 119 ERAIHVSEQKERERVMKQLIDDKLINALDRHPQ---------TREPIREAIQFIDQRLKD 169 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLK 235 + S ++A V+++ Y L + T Y + R R+Q L+ Sbjct: 170 DISLKDVAEHVHLNPS----YFSTLFKEQMQLTFSEY------LTRRRMQRAKELLMT 217 >UniRef50_UPI0001C35A14 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35A14 Length = 527 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 6/135 (4%) Query: 5 LIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 LI+DD+ V + R + + GF+C G A+ +E+A + PIDL+LLDI M N Sbjct: 6 LIVDDEYFVRQRIRLCIPWKEYGFECAGEAANVEQALHFL--QTVPIDLVLLDISMPGPN 63 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 GL+LL ++ ++ I++S A + ++ Y V +YL+KP +A+TG R+ Sbjct: 64 GLELLRMMKEKNSQAKFIILSGFATFEYARQAIAYNVTNYLLKPINTEELIQAITGIRE- 122 Query: 124 KMALEKHQYYDQAEL 138 L+K+ + Q L Sbjct: 123 --TLDKNNHLKQERL 135 >UniRef50_C6D7A9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7A9_PAESJ Length = 533 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 30/219 (13%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI+DD+ + + + GFQ G A +A E++ S+ D++L+D+ M Sbjct: 1 MYKVLIVDDEFYFRQALKISLPWSELGFQIAGEAKNGAEALELM--SEVEPDVVLVDMNM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+ + K+ +V+S ++ A + ++ GV +Y++KP + +L Sbjct: 59 PIMDGLEFIHKAKERDQKTKFLVLSGHSEFAYARQAVQLGVSNYVLKPINEEELQSSLLN 118 Query: 120 WRQ---------------KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQT- 163 ++ +K A E + + L+ + GSS + RL PQ Sbjct: 119 IKELIRSERLGELELDDLRKQASEGFSFMKEQVLNDWLQGSSRSRPQQNRLHDLGIPQEG 178 Query: 164 --LRTLCQWIDA----HQDYEFS-----TDELANEVNIS 191 RT+ +DA H D + E+A S Sbjct: 179 LHYRTVVVDLDADEERHPDEGMTIPKAKVQEIAKRCMQS 217 >UniRef50_A4XHB8 Two component transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XHB8_CALS8 Length = 546 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DDD ++ + R + + + C AST E+A E+I D+++ DI M Sbjct: 1 MYKILIVDDDMLIRKGIRNVIRWKDFDCEICAEASTGEEALELI--KKFTPDIVITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G++L+ + + +I++++ + + ++ +G D+L+KP ++ E+ + Sbjct: 59 PNMDGIELIERIKAILPQCKIIILTAYREFEYAQRAIKFGAFDFLLKP---TKVEDIINV 115 Query: 120 WRQKKMALEKHQYYDQ--AELDQLIHGSSS 147 ++ + K + + ++++L+ Sbjct: 116 VQKAIAEINKEKTMIEELEKINRLLQEKLP 145 >UniRef50_UPI0001788B4F two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788B4F Length = 270 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 18/222 (8%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL+++D+ V E R + + GF+ G A +A E+I P DL+L DI M Sbjct: 1 MWKVLLVEDEVFVRESVREIIAWEELGFKVAGEAGNGAEALEMI--RSNPPDLVLTDIVM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIK-PFQASRFEEALT 118 + +G++LL S ++++ ++ ++ ++ YG +Y++K + E L Sbjct: 59 PEMDGVELLRRTREEGYASKFVMLTCMSEFEYVRQAMEYGASNYILKLSMSVNTLRETLH 118 Query: 119 GWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQ------TLRTLCQWID 172 + Q + +S E P + +P+ ++ + Q+I Sbjct: 119 KMNAELTKSNPSPNPSQP----VSIPVASTETVPPQPAHHASPEEITTHPEVQKILQYIH 174 Query: 173 AHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHY 214 H + + + ++ V + Y+ L T IHY Sbjct: 175 EHYEQDITVKSMSGYVMMG----ENYVSALFKKKTGRTLIHY 212 >UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K9C1_BACHD Length = 510 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 13/201 (6%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M NVLI+DD+ ++ + + + GFQ G A+ + A E+I S +++ DI M Sbjct: 1 MCNVLIVDDEKLIRQGIINFFDWEKEGFQIVGEAANGKDALELI--SKNEPHIVMTDIVM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP-FQASRFEEALT 118 +G+DL+ + + ++IV+SS + ++ + H GV DY++KP + L+ Sbjct: 59 PVMDGIDLVKRVKRDFPEVEIIVLSSFEEFEYVRSTFHSGVADYILKPRLNEKDLLKTLS 118 Query: 119 GWRQKKMALEKHQYYDQA------ELDQLIHGSSSNEQD---PRRLPKGLTPQTLRTLCQ 169 R K AL K +A + +++++G + QD +R PKG + T + Sbjct: 119 EVRGKIPALAKVDSPSRAVPSISDQFEKILNGHAPLSQDDTGEKRFPKGPYRLAVITPIE 178 Query: 170 WIDAHQDYEFSTDELANEVNI 190 D H+ + + I Sbjct: 179 EQDVHRRKQHLDEREQAITGI 199 >UniRef50_A6LST7 Response regulator receiver protein n=4 Tax=Clostridium RepID=A6LST7_CLOB8 Length = 517 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 7/147 (4%) Query: 3 NVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +L++DD+ ++ + + + GFQ G AS E+A E+I D+I+ D+ M + Sbjct: 6 KILVVDDEFIMRQGITHMIDWEKEGFQIIGQASNGEEALEMI--KKDTPDIIISDVVMPQ 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP-FQASRFEEALTG- 119 NG++L + K +I++SS +D +K S G VDY++KP S L Sbjct: 64 INGIELAKFVQGKYPKIRIIILSSYSDFEYVKSSFQNGAVDYILKPSLNPSELLSTLKKI 123 Query: 120 -WRQKKMALEKHQ-YYDQAELDQLIHG 144 + K+ LE + L++LI G Sbjct: 124 SIKMKRNTLEGDSLSLTNSALNRLISG 150 >UniRef50_C6CTF9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTF9_PAESJ Length = 507 Score = 143 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 11/156 (7%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL++DD+ M+ E R + + G++ TA+ + A + +DLI++DI M Sbjct: 1 MYKVLLVDDEPMIREGLRTLLEWESLGYEVVDTAANGKDALQKC--EQHDLDLIIVDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + NGL+L+ + V+++S AD K ++ + YL+KP E L Sbjct: 59 PEMNGLELIKKIRENGGTMHVLILSGYADFEYAKQAIVQRIDGYLLKPVDEDELMEYLHS 118 Query: 120 WRQ--------KKMALEKHQYYDQAELDQLIHGSSS 147 R+ ++ L++ Q + +L +L+ S+ Sbjct: 119 LRKELDLEYETRQKRLDERQGNAEDDLKRLLVEGST 154 >UniRef50_C6IWB5 Predicted protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWB5_9BACL Length = 531 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 6/163 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V+IIDD+ + + G++ GTAS+ ++A + + DL+++DI M Sbjct: 1 MFTVMIIDDEPKQRLGLQTLIPWSDLGYEVVGTASSGKEALQSL--EQDVPDLLVVDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL LL + K +V+S AD + ++ YGV YL+KP L Sbjct: 59 PGMDGLQLLQEIRQRGWKVHAVVLSGYADFEYARRAMQYGVEGYLLKPVNKQEMSALLEK 118 Query: 120 WRQKKMALEKHQ---YYDQAELDQLIHGSSSNEQDPRRLPKGL 159 + + + Q Y + + L+ GS ++D +L L Sbjct: 119 LHARLVEQQAQQNKTYTREWLVYSLLSGSLDEKEDLDKLSASL 161 >UniRef50_C6IWZ0 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWZ0_9BACL Length = 253 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 93/215 (43%), Gaps = 20/215 (9%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M N+LI+DD+A E Y GFQ G A+ ++A +I + +D++L DI M Sbjct: 1 MYNLLIVDDEAETREALSSYFPWNEVGFQVVGQANNGQEALRLIAEGE-RVDIVLTDIKM 59 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G++L L+N R + V+ +S D + +LH+ V++Y++KP + + Sbjct: 60 PVMSGIELAEQLYNHRRQIKVVFLSGYRDFEYAQQALHFRVINYILKPAKYHVLLDVFGK 119 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +++ A + D +P +G ++ + +++ A+ Sbjct: 120 IKEELEAEAAAENQD-------------LGPNPSAPGQGGESLIIQKIKEYVKANYKNA- 165 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHY 214 S +E+A V+++ YL + Y Sbjct: 166 SLEEVARLVHMNA----NYLSFFFKQKTGQNFSDY 196 >UniRef50_A9KRS1 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRS1_CLOPH Length = 548 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 4/144 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VL++DD+ + + + GF G A+ ++A + T +DLI+ DI M Sbjct: 23 MLRVLVVDDEPYIKQGLAMLINWMAEGFTIIGEAANGKEAIRFL--QKTKVDLIIADIKM 80 Query: 60 QKENGLDLLPVLHNAR-CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + NG++LL + + + I++S D + ++ + DYL+KP Q E L Sbjct: 81 PEMNGIELLEYIKKEKLSDASYIILSGYYDFQYARSAIQHNCCDYLLKPVQKDELLEVLR 140 Query: 119 GWRQKKMALEKHQYYDQAELDQLI 142 QK L Q ++ + L Sbjct: 141 RVSQKSKELNNRQIENREKERALF 164 >UniRef50_A7VQW7 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQW7_9CLOT Length = 508 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 83/188 (44%), Gaps = 14/188 (7%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +VL++DD+ + R+ V Q GF + +A E++ P DL++LDI M Sbjct: 1 MRSVLLVDDEYFIRVRVRKCVDWQALGFDMVADCESGREALELL--EAHPFDLVVLDISM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L + S +++++ K +L +GV+DY++KP E+ + Sbjct: 59 PIMDGLSLCREIRARGYDSQLVILTGYDKFEYAKSALSFGVLDYILKPIDEEEMEQVVKK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGL-------TPQTLRTLCQW-I 171 ++ +++ + + + L+ S + + + P+T LCQ+ + Sbjct: 119 ACER---IDRKESLEHQRAEHLLLKSQAEQMKSDIFFSSILTDSFLERPETAEMLCQYGV 175 Query: 172 DAHQDYEF 179 D + Y Sbjct: 176 DPKEKYRL 183 >UniRef50_C6J1B9 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1B9_9BACL Length = 528 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 80/188 (42%), Gaps = 21/188 (11%) Query: 2 INVLIIDDDAMVAELNR-RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + VLI+DD+ ++ L R R + GF+ G AS ++A E++ + D+I DIYM Sbjct: 4 LKVLIVDDEHLIRNLIRLRIDWEQEGFEITGEASNAQEALELV--EEQNPDIIFTDIYMP 61 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G++L + ++V+S + + + G+ D+L+KP +AS Sbjct: 62 NMDGIELSRRVLERYPHIKIVVVSGHDEFEYAQQGIKIGIFDFLLKPIRASDLLHVAGNL 121 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 +QK IH + ++ ++ + L +++ + S Sbjct: 122 KQK------------------IHEERTRAKEISKMKEELERNLPYLRERFLFQWLNGALS 163 Query: 181 TDELANEV 188 +E+ + Sbjct: 164 REEIVEQA 171 >UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZVU5_9FIRM Length = 509 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLI+DD+ + E + +++ G + AS ++A +II + D I L+L DI M Sbjct: 1 MTNVLIVDDEKIEREGLKYLLSREEGERNVFEASNGKQALQIIRSED--IQLVLTDIKMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL+L +I+ S +D ++++ YGV +Y++KP F + + Sbjct: 59 HMDGLELSRRAKEENPALQIIIFSGYSDFTFAQEAIRYGVTEYILKPVNPEDFHKVIQKA 118 Query: 121 RQKKMALEKHQYYDQAE 137 + +K + + E Sbjct: 119 EKVIEQRKKKESREIKE 135 >UniRef50_C6IZP2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZP2_9BACL Length = 520 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 7/161 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI VLI+DD+ + E R ++ G++ A+ +A E DL++ DI M Sbjct: 1 MIKVLIVDDEPKLREGLRTFIDWGAYGYEVVDMAANGNEALE--KYQQYHPDLVVADIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L+ L ++++S AD + K ++ + YL+KP ++ L Sbjct: 59 PGMDGLQLIEKLRAQDPNLHILILSGYADFSYAKKAMTHRADGYLLKPVDEDELKDYLWK 118 Query: 120 WR----QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLP 156 + ++K + + + + LI + E + P Sbjct: 119 IKLTIDEEKASEQWKHVTTEWNREALIQSVLTGEDEEDPTP 159 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + +LI+DD+ +V E + V Q + G + + A ++ D+IL DI M Sbjct: 1 MKILIVDDEPIVREGLKNNVSWQELDLRVVGCEANGKSALDVFNREQ--PDIILTDIRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG- 119 +GL+L + VI++S+ D + ++ G DY++KP +E + Sbjct: 59 FMDGLELTREVKKLDPLVVVILLSAYDDFKYAQQAIRLGAFDYILKPIDIDTLKETVRRA 118 Query: 120 WRQKKMALEKHQY 132 ++K L+K + Sbjct: 119 VLKRKELLDKKKE 131 >UniRef50_Q5WIY3 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIY3_BACSK Length = 493 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 10/192 (5%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DD+ M+ E + + + GF+ A + A E DL++ DI M Sbjct: 1 MYKVLIADDEWMIREGVKNLIPWEHYGFEVASLACNGKDALE--KYKHDKPDLVIADIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + +GL LL + +++S AD ++++ +GV YL+KP + E L Sbjct: 59 PQMDGLSLLKEIRTENEAVPFLLLSGHADFHYAQEAIGHGVDGYLLKPLEEDELIEHLQI 118 Query: 120 WRQKKMALEKHQYYDQAEL----DQLIHGSSSNEQDPRRLPK---GLTPQTLRTLCQWID 172 K ++ Q + ++L+ + + P + GL + Sbjct: 119 VFHKLEQRKQAHVLRQQSVRIEQERLLLNLLAGKPLPTSVDFSRLGLAASRYQIFLVHAG 178 Query: 173 AHQDYEFSTDEL 184 E +++ Sbjct: 179 ERDALEHLAEQI 190 >UniRef50_UPI0001C351CB two component AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C351CB Length = 252 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 13/192 (6%) Query: 1 MINVLIIDDDAMVAELNR-RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VL+IDD+ V + G A+ + E DLI+ DI M Sbjct: 1 MLKVLVIDDEVFVRKGIVMETDWASLDCMVAGEAANGLEGLEAC--RKYNPDLIISDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +G+++L +L VI +++ ++ +++L DYL+KPF+ E+A++ Sbjct: 59 PKMDGIEMLKILREEGNDVSVIFLTAYSEFEYARNALKLLAFDYLLKPFEDGELEDAVSR 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R K + + + + I + D R K + + + D + Sbjct: 119 VRDKLVREREEKERREE---SKILSPGARTGDKSRYIK-------EAIAYITEHYNDSDL 168 Query: 180 STDELANEVNIS 191 S +A + IS Sbjct: 169 SVGTIAESLGIS 180 >UniRef50_C5ENT8 Two component transcriptional regulator n=2 Tax=Clostridiales RepID=C5ENT8_9FIRM Length = 529 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 10/149 (6%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V+I DD+ ++ L + G + A +A E+I + + D+++ DI M Sbjct: 1 MLKVIIADDERLICRLVQALADWDSLGMEVTALAENGLEALELIKSRE--PDILITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L+ +V++IS A + ++ YG YL+KP + + E L Sbjct: 59 PGCDGLELIRSAKELMPDLEVVIISGYAHFEYAQKAMKYGAGYYLLKPIKQTELMETLEK 118 Query: 120 WRQK-------KMALEKHQYYDQAELDQL 141 R+K + A+ + Q +L ++ Sbjct: 119 IREKCEARQETRTAIHRQHQNSQEDLSRI 147 >UniRef50_UPI0001789951 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789951 Length = 539 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 7/171 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DD+ +V E R + G++C G A E + D++L DI M Sbjct: 1 MYTILIVDDEPIVREGIRNRIQWSEHGYECIGDCENGRDALEAVTRHQ--PDVVLTDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L + K+ +I+++ D + ++ V D+++KP A+ + L Sbjct: 59 PYMDGLELSRHITERFPKTKIIILTGFDDFEYAQQAVKLQVTDFILKPVTAAELRDMLDK 118 Query: 120 WR----QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRT 166 + +++ E + + + L+ + P + R Sbjct: 119 LKLEMDEERGHTEHLKRLKKQLNESLVLLRERFLERLASSPMKRSEMESRL 169 >UniRef50_UPI00017880F1 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017880F1 Length = 518 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VLI+DD+ + E + V G+Q TA+ +A E + DL+L+DI M Sbjct: 1 MMKVLIVDDEPKLREGLKSIVPWTELGYQVVDTAANGNEALE--KHGKYDPDLMLIDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L+ + N + ++++S AD K ++ + V YL+KP + L Sbjct: 59 PGMDGLQLIEAIRNLDAEIHLLILSGYADFDYAKRAISHRVDGYLLKPVDEDELSKYLLQ 118 Query: 120 WRQKKMALEKHQYYDQA 136 ++ ++ + ++A Sbjct: 119 IKEAIEQEQERKALNRA 135 >UniRef50_UPI0001C363ED two component AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C363ED Length = 487 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 7/151 (4%) Query: 1 MINVLIIDDDAMVAELNRR-YVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DD+ + R + GF+ G A E+A +I +T D++L DI M Sbjct: 77 MYQLLIVDDEEDIRRGMARGIPWKEWGFEVAGQAENGEEAVRMI--GETHPDVVLSDIRM 134 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +G++L+ LH + +I++S D + ++ V +YL+KP FE Sbjct: 135 PKMDGIELMQYLHENNPEIKIIILSGYNDVEYLNMAIRNQVTEYLLKPTDIDEFETLFHR 194 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQ 150 + K + + EL+ L + N++ Sbjct: 195 LKTKLD----EEGMKRRELESLKVSAMQNKE 221 >UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2H9_9BACL Length = 535 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 7/139 (5%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + L++DD+ + + + + GF+ A ++A E+ S DLIL DI M Sbjct: 3 LKALLVDDEIHILTNLSKVLPWEEMGFEVVLLAKNGKEALEM--ASQHRPDLILSDIRMP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG- 119 +G+ LL L ++++++ + + ++ YGV DY+ KP EE + G Sbjct: 61 VMDGIQLLQELREREIPCEILLLTGYQEFEYARTAIRYGVKDYICKPINYFELEETVRGI 120 Query: 120 ---WRQKKMALEKHQYYDQ 135 R+K+ L K Q +Q Sbjct: 121 AKQIREKRKNLNKEQRMNQ 139 >UniRef50_UPI0001C36B1C two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36B1C Length = 505 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 12/187 (6%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +N+LIIDD+ +V E + GF CG A E+ +I DL+LLDI + Sbjct: 1 MNLLIIDDEQIVREGLKTIFPWAEYGFTVCGEAKNGEEGVSLI--RSLNPDLVLLDIRLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 K +GL++L + +I++S AD K ++ GV YL+KP A+ Sbjct: 59 KLDGLEVLKTVREEGFGGQIIILSGYADFDYAKTAIRLGVCSYLLKPIDEEELLHAVKQA 118 Query: 121 --------RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKG-LTPQTLRTLCQWI 171 R+ AL+ + + L +++G + ++++ LT + L I Sbjct: 119 KETLEKEKRESDQALKSPEQVRRELLLDILNGGAEHKREELLACSMDLTADAYQVLLVVI 178 Query: 172 DAHQDYE 178 + Sbjct: 179 KDRKPDG 185 >UniRef50_A9QDR4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=A9QDR4_PAESJ Length = 522 Score = 139 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 9/158 (5%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL++DD+ V + R + + G++ C A ++A E I DL++ DI M Sbjct: 1 MYKVLLVDDEIFVRKGLRNLIDWESLGYEICDEAGNGQEALEKIQL--IKPDLVIADIRM 58 Query: 60 QKENGLDLLPVLHNARCKSD-VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 +GL+L+ + S I++S D + +L YGV DY++KP + E L Sbjct: 59 PVLDGLELIRKVTEEGVHSPTFIIVSGYHDFQYAQRALRYGVHDYILKPIDEAELETTLK 118 Query: 119 GW-----RQKKMALEKHQYYDQAELDQLIHGSSSNEQD 151 +K + + ++ L+ G S + Sbjct: 119 ALSGTLGLKKLATIAGDSLVTDSIVETLVQGQFSEADN 156 >UniRef50_C6LL33 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LL33_9FIRM Length = 529 Score = 139 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 8/173 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V+I DD+ + L + + GTA +A E++ T D+++ DI M Sbjct: 1 MLKVVIADDEERICRLIEALADWRALSMEVVGTAHNGLEACEMV--EKTCPDILITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L+ + + + ++I+IS A + ++ +GV DYL+KP + L Sbjct: 59 PGCSGLELIEKVKKSAEQLEIIIISGYAHFEYAQQAIKFGVGDYLLKPISKAELTATLEK 118 Query: 120 WRQKKMALEKHQYYDQA-----ELDQLIHGSSSNEQDPRRLPKGLTPQTLRTL 167 R + + + + Q ELD E + L+ QTL+ + Sbjct: 119 LRDRILQRQASEQDRQELKRKAELDVRRLREELLEALFLQKDTELSAQTLQEI 171 >UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHL9_9FIRM Length = 254 Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 90/234 (38%), Gaps = 23/234 (9%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + ++I+DD+ + + + G+Q G A +++++ D+I+ DI M + Sbjct: 1 MKLMIVDDEPKIRNGLLKLLGARDGWQVTGVFEDALSALTALYDNEA--DVIVTDIKMPE 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+L+ + ++++S ++ A + ++ GV YL+KP L G Sbjct: 59 VSGLELIRQIRERNQDIHIVILSGHSNFAYAQKAIELGVTRYLLKPTNPRELVAVLEGI- 117 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLP--KGLTPQTLRTLCQWIDAHQDYEF 179 + Q D E + G+ ++ Q+++ H Sbjct: 118 --------EKELKQGAGDAPDKKQPPQEGEAGSGADGDGVGNLLVQKAIQYVEVHYGGRI 169 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 + +++ E+++S YL L H + Y V YR+ L Sbjct: 170 TLKDMSEELHLSP----NYLCELFKRHTGKNLMEY------VTEYRMMKARNYL 213 >UniRef50_D1PQR0 DNA-binding response regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQR0_9FIRM Length = 535 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 4/136 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V+I+DD+ +A+ + + G++ S ++A E I P+DL++ D+ M Sbjct: 1 MLKVIIVDDEQFIAQGLQALIDWNAAGYEVAAVLSDGQEALEYI--KKLPVDLVITDVMM 58 Query: 60 QKENGLDLLPVLHNAR-CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 K GL+LL + + +++S ++ + + +L YG +DYL+KP + L+ Sbjct: 59 PKMTGLELLETVRRENLSNAGFVILSGYSEFSYAQKALRYGCIDYLLKPVEKQDLLSILS 118 Query: 119 GWRQKKMALEKHQYYD 134 + + + Y+ Sbjct: 119 KYNNISQNSKMEEQYE 134 >UniRef50_A5ZA57 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5ZA57_9FIRM Length = 516 Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 3/133 (2%) Query: 1 MINVLIIDDDAMVAELNRR-YVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+NVL++DD+ + L R+ Y + GF G A++ E A E I + +D+++ DI M Sbjct: 1 MLNVLLVDDEKLERVLIRKGYNWEENGFNIVGEAASGEDALEYINYHN--VDIVITDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L K V++++ + + ++ GV ++L+KP E +T Sbjct: 59 PGMDGLQFTEKLLQKNPKCRVVIVTGFREFEYARKAIKLGVDEFLLKPVNIKEISEVMTK 118 Query: 120 WRQKKMALEKHQY 132 + + + + + Sbjct: 119 IKTEIAKVNEEES 131 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 139 bits (350), Expect = 9e-32, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 12/195 (6%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 ++LI+DD+ + + + GF+ TA +A + + S DL+LLDI+M Sbjct: 4 SILIVDDEPSILDSLGGILTD-EGFEVV-TALNGYEAIKQL--SKISPDLMLLDIWMPGM 59 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +GL+ L + V++I+ T + G D++ KP + + Sbjct: 60 DGLETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALN 119 Query: 123 KKMALEKHQYYDQAELDQL-IHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + E++ Y + L++ I G S + R + P L + Sbjct: 120 FRRLEEENLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLIS------GENGTG 173 Query: 182 DELANEVNISRVSCR 196 E+ I +S R Sbjct: 174 KEMVART-IHHLSAR 187 >UniRef50_A7B0I4 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0I4_RUMGN Length = 573 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 15/190 (7%) Query: 2 INVLIIDDDAMVAELN-RRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 VL++DD+ +V E + GF+ G + A E + + P+D++L DI M Sbjct: 41 YKVLLVDDEILVREAISAKIEWGHLGFELVGDCENGKAAIEFL--KENPVDVVLTDICMP 98 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+ L ++ ++ +I+ S +D K ++ Y V +YL+KP A E LT Sbjct: 99 YLDGMGLSKYIYENMPQTRIIIFSGYSDFEYAKQAIQYKVAEYLLKPVTAKELTEVLTRI 158 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R+K + + ++ +D L ++ R K +TL + + Q E S Sbjct: 159 REKLDS----ERTEEERIDAL-------QKAYRTYTKNEALIISKTLSRLLQGTQAIETS 207 Query: 181 TDELANEVNI 190 +EL E I Sbjct: 208 MEEL-KEFGI 216 >UniRef50_C6JCU5 Two component transcriptional regulator n=2 Tax=Ruminococcus RepID=C6JCU5_9FIRM Length = 539 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 15/192 (7%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +L++DD+ +V + R + + + G +A E F +D++L DI M Sbjct: 1 MYKILLVDDEILVRDAIRENIDWKSLDCELVGDCENGRQAVE--FVQSHKVDVVLTDICM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G++L LH+ +++ S + K ++ Y V +Y++KP A + L Sbjct: 59 PYMDGMELSEFLHDNYPDILIVIFSGFGEFEYAKKAIRYNVSEYMLKPVTAMELTKVLRN 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++K + +K Q S Q + K + + L ++ +D + Sbjct: 119 MKEKLDSRKKEQK-----------KMESLSQTSKDYHKNVDVIRSKALETLVNCTRDVQV 167 Query: 180 STDELANEVNIS 191 S EL ++ IS Sbjct: 168 SLLEL-KKLGIS 178 >UniRef50_C6CRZ9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRZ9_PAESJ Length = 501 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 2/136 (1%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VLI++D E + ++Q + G A T E+ + + DLIL+DI+M Sbjct: 4 TVLIVEDQPNFREGLKFMISQSRNWTVIGEAETGEEGWQKAL--ELKPDLILMDIHMPVM 61 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 NG++L +H+ + I+I+ D + ++ YG +D+L+KP L + Sbjct: 62 NGIELAERIHSHGMDTLFIIITGFQDFQYAQSAIRYGAMDFLLKPCSDEDISGILGSASK 121 Query: 123 KKMALEKHQYYDQAEL 138 K A K Q + L Sbjct: 122 KLQAKRKDQQTTREHL 137 >UniRef50_A6TVR4 Two component transcriptional regulator, LuxR family n=5 Tax=Firmicutes RepID=A6TVR4_ALKMQ Length = 208 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 14/203 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLI+DDDA++ + + + F GTAS ++A E F + DLIL+DI M Sbjct: 1 MKVLIVDDDALIRDSLKILIDLEADFTVVGTASNGQEAFE--FCKEYAPDLILMDIRMPI 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ ++ + +I++++ D IK++L G Y++K ++ Sbjct: 59 MDGVLATKMIKESFGSIRIIILTTFKDDQYIKEALKNGAQGYILK-------SQSADSII 111 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + K + E+ ++ E++ L LT + + +W+ S Sbjct: 112 ESLRTVSKGNVVFETEIASVLTSMLKEEKEKHHLDLQLTERE-HEIIKWV----GEGLSN 166 Query: 182 DELANEVNISRVSCRKYLIWLVN 204 E++ + +S + R Y+ L+ Sbjct: 167 REISAALYLSEGTVRNYVTQLLE 189 >UniRef50_UPI0001C358FB two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C358FB Length = 273 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 90/232 (38%), Gaps = 13/232 (5%) Query: 3 NVLIIDDDAMVAELNRRYVAQ-IPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +++DD+ V L + G + G A E+A ++ DL++ DI M Sbjct: 5 KAVLVDDEENVRYLLADLLESFHLGIEVTGQAGDGEEALKLC--RSLKPDLVISDIKMPG 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ +L + + + +S+ D K ++ G Y++KP + + L + Sbjct: 63 LDGIHMLEAVKKISPEIICVFVSAYTDFEYAKAAIANGARGYILKPVEPEEMYQLLKTVK 122 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + M +KH+ Q ++ + + D + + +R +++ H + S Sbjct: 123 AEWMQSQKHRKKVQLMETEIRKLKAEHLTDDMPVDSNGCSRVIRKALNYMEDHYHEDISL 182 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 + ++ V +++ Y L + + Y + YR++ L Sbjct: 183 ESISEVVFLNK----NYFSELFKKETGKSFVQY------LTEYRLEKAKLLL 224 >UniRef50_C6IYJ7 Predicted protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYJ7_9BACL Length = 533 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 18/192 (9%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI VLI+DD+ +V + + + GF+ G A+ E+A ++ D P D++L DI M Sbjct: 2 MIKVLIVDDEILVRIGLKTIIPWEDNGFELIGEAANGEEALRLL--KDNPCDIVLTDIRM 59 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIK-PFQASRFEEALT 118 +GL L+ + ++ +++S+ D ++ +L G DY++K + S + L Sbjct: 60 PGCDGLQLMEEIRKLSPRTKCLILSNHNDFEYVQRALRLGAADYILKLTMEPSELMDKLN 119 Query: 119 GWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 ++ E Q + + L + S ++ + L + + Q Sbjct: 120 SMKEMIRQ-EAEQSLETSRLQVKVSKYSREAKE-------------KRLRELLIKRQGTR 165 Query: 179 FSTDELANEVNI 190 +E+ E + Sbjct: 166 AEVEEMMQEFGL 177 >UniRef50_A8RNS9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNS9_9CLOT Length = 273 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 96/215 (44%), Gaps = 8/215 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIP-GFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + V+I++D+ ++ + + + G GTA + E I D++L DI M Sbjct: 3 LKVVIVEDEEIIRKGLTFALNWLDMGCIIVGTAKDGAEGLETIRREQ--PDIVLTDIKMP 60 Query: 61 KENGLDLLP-VLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K NGL ++ + + + S +V++S ++ + ++H GV DYL+KP +E+L Sbjct: 61 KMNGLKMIETAIKDQQFYS--LVLTSYSEFELARQAIHMGVTDYLLKPVDEDELKESLDK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 RQ+ K++ ++ D+L+ +E K ++ +++ H + Sbjct: 119 IRQQIAYASKYEKIEKISQDRLLTVY--DEWKIFDSAKNSMDPYVKRTYEFVKQHYKEKV 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHY 214 S +++A + +S + L +N + Y Sbjct: 177 SINQVAESLGVSTSYLSRKLKAGLNTTFVDLLNQY 211 >UniRef50_D2LWA9 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LWA9_BACS4 Length = 525 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 5/145 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL++DD+ V + R + + G+ A E A E+I D+++ DI M Sbjct: 1 MYKVLLVDDEVFVRKGLRSLIEWEKCGYDVVSEADDGEDAFEVI--KQISPDVVITDIKM 58 Query: 60 QKENGLDLLPVLHN-ARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 +GL+L+ + + I+IS D + + ++ YGVVD+++KP FE LT Sbjct: 59 PIVDGLELIKKVRETLDHDTKFIIISGYNDFSYAQRAVKYGVVDFVLKPIDKEEFEGILT 118 Query: 119 GW-RQKKMALEKHQYYDQAELDQLI 142 R+ +M + D+ L QLI Sbjct: 119 DLHRRLEMERTARKAKDKLYLSQLI 143 >UniRef50_C7IBY4 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IBY4_9CLOT Length = 255 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI DD+ + Y GF+ AS ++A E I +D++L DI M Sbjct: 1 MYKLLIADDEPRLRNGISNYFPWNETGFEVLYEASNGKQALEFI--EKNHVDVVLSDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G+DL ++N VI ++ D K++++YGV +Y++KP + + E + Sbjct: 59 PIMSGIDLAREIYNRGMIIKVIFLTGYKDFEYAKEAINYGVKNYVLKPTKYNELAEVFSK 118 Query: 120 WRQKK-MALEKHQYYDQAELDQLIHG 144 +++ LE + D +D +G Sbjct: 119 IKKELDKELENKVFEDVGTIDSEFNG 144 >UniRef50_A3CKH3 Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative n=30 Tax=Bacteria RepID=A3CKH3_STRSV Length = 227 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 79/199 (39%), Gaps = 7/199 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLI DD A++ E + ++ + GT ++ E + D+IL+DI M Sbjct: 1 MIKVLIADDQALIRESLQIILSAHADIEVVGTVGDGKEVLEKL--HRVRPDVILMDIRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+ + +I++++ D I +L YG Y++K EA+ Sbjct: 59 VMDGVLCTKAVKEQYPDVKIIILTTFDDDEFIFSALKYGASGYILKGVSTEELHEAIQTV 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + + ++ + S+ + ++ + + Q + S Sbjct: 119 YRGGAMINPNIATKVFKIFSQMAQSNFAITVTEENIEDMSRTEWKIIQQI-----GFGIS 173 Query: 181 TDELANEVNISRVSCRKYL 199 E+A ++ +S + R YL Sbjct: 174 NKEIAAKLFLSEGTVRNYL 192 >UniRef50_UPI00016C0A10 response regulator receiver protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0A10 Length = 257 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 16/215 (7%) Query: 1 MINVLIIDDDAMVAELNRR-YVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI VL++DD+ + L R+ + GF+ G AS+ +A + I +S DLIL DI M Sbjct: 1 MIKVLLVDDEKLERVLIRKGFDWAKHGFEIIGEASSAAEALKFIQSSI--PDLILTDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + NGL+L + +++++ + + +L GV D+L+KP + Sbjct: 59 PQMNGLELTAKIRKQLPNCQIVIVTGYREFDYARRALKLGVTDFLLKPINMEEIAALVET 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + + + + +RL K + + L + I + + Sbjct: 119 LK-----FDAQTKKAPPNIPNTVEVIKAEPTQNKRLHK-IIIEALDYVSTEI---YNPDL 169 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHY 214 S +A++ S YL L I + I Y Sbjct: 170 SLKLVASKTY----SNESYLSRLFKQEIGVSLIEY 200 >UniRef50_C6J6V9 Response regulator n=2 Tax=Bacillales RepID=C6J6V9_9BACL Length = 517 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + +LI+DD+ +V + + Q G + G A +A +I + D++LLDI M Sbjct: 1 MKILIVDDEPLVRIGIKSAIDWQAEGVEIIGEAGDGAEALRLIASEQ--PDVVLLDIKMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP-FQASRFEEALTG 119 K +GL++L + V+V+SS D +K+++ G +DY KP L Sbjct: 59 KMDGLEVLRRIKEQELPVKVVVLSSFDDFGFVKEAMKLGALDYFHKPDINDRELIGMLQN 118 Query: 120 WRQK 123 R++ Sbjct: 119 IREQ 122 >UniRef50_B8I425 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I425_CLOCE Length = 538 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 68/146 (46%), Gaps = 5/146 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLIIDD++++ + + + + + C AS + E+I ++I+ DI M Sbjct: 1 MYKVLIIDDESIIRKGIKNIINWKQLDCEVCADASDGIEGIELI--KKYVPEVIITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+++ + S +I+++ D ++ ++ G D+L+KP + LT Sbjct: 59 PGMDGLEMIKNVKEIVPNSKIIILTGYRDFDYVQKAIKCGAYDFLLKPSKIEELTSVLTN 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGS 145 + E+ Y++ E +++ Sbjct: 119 AV--RELDEQKNKYNEIERFRMLFEQ 142 >UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC64_9FIRM Length = 276 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 86/199 (43%), Gaps = 11/199 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +N+LI DD+A++ + G + + +AKE++ + T IDL++ DI M Sbjct: 1 MNLLIADDEAVIRRGLLSLDWKSIGITDVYSVANGVEAKELLLS--TSIDLVIFDIRMPG 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+L ++ V+++S ++ + ++ YGV +YL+KP + E + Sbjct: 59 FSGLELAQMVKERSMDVAVVLLSGFSEFEYARSAMRYGVYEYLLKPVSPNELMETMHNVM 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGL---TPQTLRTLCQWIDAHQDYE 178 + + ++Q L Q + D L + ++++ I + + Sbjct: 119 HRLE----QKRFEQKLLSQ--KDEFGEKHDAVSQVNSLFVQSSGAIKSILTDIAQNYEQN 172 Query: 179 FSTDELANEVNISRVSCRK 197 S +LA + + S + Sbjct: 173 ISLADLAEKYHFSESYISR 191 >UniRef50_A6BJV8 Putative uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A6BJV8_9FIRM Length = 508 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 66/131 (50%), Gaps = 3/131 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + + +I+D+ + E + +I P +Q G+A + +I + DLI+LDI M Sbjct: 1 MKIAVIEDEKPIREGLVHILNKISPEYQVVGSAKNGAEG--LILLEEEMPDLIMLDIQMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL +L + VI++++ +D + K ++ G+ +YL+KP + ++ L Sbjct: 59 DMDGLQMLKEARARGIYTKVIILTAYSDFSYAKKAIELGIENYLLKPVNLTELKKTLEKI 118 Query: 121 RQKKMALEKHQ 131 +++ ++ + Sbjct: 119 KEELFVEQRGK 129 >UniRef50_A8RWS2 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWS2_9CLOT Length = 506 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 14/170 (8%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ ++I DD+ ++ E R ++ Q G + G S +A E I D D++L DI M Sbjct: 1 MLKLVIADDEKIIRETIRNFIDWQSIGIEVVGVCSNGVEAYETIL--DYYPDIVLTDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L+ + I++S K+++ +G+ YL+KP + +A+ Sbjct: 59 PGFSGLELVKKIKEIDNNIQFIILSGYDSFEYAKEAMQFGIHHYLLKPCNEHQIIDAINA 118 Query: 120 WRQ-----------KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKG 158 ++ +K + + Q + LI S+E L K Sbjct: 119 VKEDCYKQRSFLAMQKQQKDNEKNLAQNVMKNLIFECISSESSMLSLTKN 168 >UniRef50_C6CUM4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CUM4_PAESJ Length = 524 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 79/142 (55%), Gaps = 3/142 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI+DDD ++ E + + + G+ G A + A ++I D+IL DIYM Sbjct: 1 MYKVLIVDDDGLIREDVQTMMDWREHGYDIIGEAENGKAALKLI--EQHDPDIILTDIYM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G++L+ + +AR K+ ++V+S+ D A++K+++ YG DY++K L G Sbjct: 59 PVMDGIELIKQVRSARRKAKIVVMSNYDDFASVKEAMKYGASDYVLKYKLDPDVLLDLLG 118 Query: 120 WRQKKMALEKHQYYDQAELDQL 141 +K +A E + QA+L+++ Sbjct: 119 QTKKLLAAEARESEQQAQLEKI 140 >UniRef50_C1F424 Response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F424_ACIC5 Length = 370 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 89/219 (40%), Gaps = 20/219 (9%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 +L++DD+ + + + + A+ ++A E + D P D++L DI M Sbjct: 5 RILVVDDEPYIRAVIATMLEKSNYLPVL--AANGQEALEHL-EQDAPYDVVLSDIMMNGM 61 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +G+ LL L + +I++++ D + ++ G DYL+KPF + + Sbjct: 62 DGIGLLEKLREVHPDTPMIMVTAMHDVSIAISAMRKGAYDYLLKPFAKEQLLATVGRALD 121 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWID---------A 173 + ++++ Y Q L++L+ + + + TL L +D + Sbjct: 122 YRRLVQQNSMYRQ-NLEELVSARTEMLRQAMNDLERSYDITLEALGDALDLKDAETEGHS 180 Query: 174 HQDYEFSTDELANEVNIS----RVSCRKYLIWLVNCHIL 208 + ++ LA + +S R R +L + + Sbjct: 181 KRVTAYTIA-LARHMGVSAQQMRTVAR--GAFLHDIGKM 216 >UniRef50_UPI0001789139 two component transcriptional regulator, LuxR family n=2 Tax=Bacillales RepID=UPI0001789139 Length = 216 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 8/199 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI+VLI DDD + E + V P + A E+A ++ + D++L+DI M Sbjct: 1 MISVLIADDDPFIRESLKLLVGMDPDIEVSAVAEHGEEALSLLMDG-LHADVVLMDIRMP 59 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G++ + V+++++ D I ++L G YL+K R + + Sbjct: 60 VCDGVEGTRRIRERYPDVRVLMLTTFDDDDYIVEALRNGASGYLLKNIPPDRIIQGIKTV 119 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 M + H + L + GLTP R + A S Sbjct: 120 HDGNMLI--HPDIARKLTGMLRPTPQPVPRSAELEQFGLTPAEKRVV-----ALIAEGLS 172 Query: 181 TDELANEVNISRVSCRKYL 199 E+A ++ +S + + Y+ Sbjct: 173 NKEIAAQLYLSEGTVKNYV 191 >UniRef50_C7GHF1 Putative two-component response regulator n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GHF1_9FIRM Length = 517 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 1 MINVLIIDDDAMVAELNR-RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DD++++ E + + + G+ G A+ E A + I D++LLDI M Sbjct: 1 MYRVLIADDESIIREGIKCLFDWESLGYTIAGEAANGETAYQQILALQ--PDIVLLDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 GLD++ VI++S +D ++++ YGV YL KP EE L Sbjct: 59 SGMLGLDVIREARAQGFTGKVIILSGYSDFKYAQEAIRYGVQYYLTKPIDEDELEEILRS 118 Query: 120 WRQKK----MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPK---GLTPQTLRTLCQWID 172 ++ ++Y + + +I +N+ D + LT T + + Sbjct: 119 IKENLDKAAATANTREHYREKARETIIRDLLTNDIDLSHINTTDLHLTADTYQVVIYEKY 178 Query: 173 AHQDYEFS 180 +H + S Sbjct: 179 SHNTADAS 186 >UniRef50_Q3AD13 Response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD13_CARHZ Length = 205 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 21/226 (9%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLIIDDD + +A G++ A E D++L+D +M Sbjct: 1 MRVLIIDDDEGIRYTVGEIIA-FMGWEAI-KAENGAIGIEKFVREK--PDMVLVDYHMPA 56 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GLD + + +IV++ L G D+ +KP +A L Sbjct: 57 LDGLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGASDFALKPIKAPDLIARLKVHA 116 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + DQ L KG+ +T + +++ Q + Sbjct: 117 RMIEINRSQEKKDQD----------------GFLAKGINKKTFNLIVEYLKE-QKEPQTI 159 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +E+ V ++ + +YL+++VN I+ YG GRP +Y++ Sbjct: 160 EEITEGVGLAYPTVHRYLLYMVNEGIVSIECDYGRIGRPKNKYKLV 205 >UniRef50_C4ZGL1 Putative uncharacterized protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGL1_EUBR3 Length = 531 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 8/144 (5%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VL++DD+ + + + + + GF+ G S ++A + + N + +DL++ DI M Sbjct: 1 MLKVLLVDDEPFIIQGLKVIIDWENEGFEIAGMVSNGKEALQFLENEN--VDLVIADIRM 58 Query: 60 QKENGLDLLPVLHN-ARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + GL+LL L + +++S AD + + ++ DY++KP + L Sbjct: 59 PEMTGLELLETLRKDKKSDVYFVILSGYADFSYAQQAMQNDCTDYILKPVDKEMLLKVLN 118 Query: 119 GWR----QKKMALEKHQYYDQAEL 138 +K E ++ QA L Sbjct: 119 KVLVLKNEKNKIDEDNKKMKQAYL 142 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 4/136 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M +LI+DD+++V + + + TA + +KA +I DTP D+++ D+ M Sbjct: 1 MEKILIVDDESIVRNFLAETLRRK-NIEVV-TAESGKKALSLI--KDTPFDMVITDMKMP 56 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G+D+L + V+VI++ +++ G +YLIKPF E + Sbjct: 57 DLTGIDILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKA 116 Query: 121 RQKKMALEKHQYYDQA 136 ++ ++++QY Q Sbjct: 117 KEHLSLVQENQYLRQQ 132 >UniRef50_C6D6B5 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6B5_PAESJ Length = 542 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 5/166 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPG-FQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M N+LI+DD+A+ R+ + G ++ G A +A E++ D++L DI M Sbjct: 1 MPNILIVDDEAIFRRGLRKMIESSSGSWEVAGEAKDGYEALEMV--ESLKPDVLLTDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + +GL L+ + K VIV+S + ++ SL +GV DYL+KP + + L Sbjct: 59 PRMDGLQLIQIAKERFPKLLVIVLSGFDEFTYLQQSLRHGVRDYLMKPVEREELFKTLGK 118 Query: 120 WRQKKMALEKH--QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQT 163 + L++ + Y D I +E L KG +T Sbjct: 119 LESELAKLQQQVPELYTAEPADARIIRQHVSEHLVAGLLKGYVNET 164 >UniRef50_A4XID8 Response regulator receiver protein n=4 Tax=Clostridia RepID=A4XID8_CALS8 Length = 1066 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 90/200 (45%), Gaps = 17/200 (8%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +LI+DD + ++ R + ++ G + G AS+ +A ++ + D++ LDI + Sbjct: 1 MKILIVDDAVFIRKVLRGILQEL-GEEVVGEASSGNEALRMV--KEYRPDVVTLDITLPD 57 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+LL + + V++I++ ++ +K+++ G +Y+ KPF + EE L Sbjct: 58 MSGLELLKKIKEVSSSTQVVMITAISNHEVVKEAMKVGATNYITKPFSREKVEEVLKKVE 117 Query: 122 QKKMALEK-------HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAH 174 + A+ + + Q EL Q + E + + + + + +++ Sbjct: 118 KNIQAMSQIERNMTNEESIGQKELSQATIETPGVENESKN-------EEVARIDEFVKVE 170 Query: 175 QDYEFSTDELANEVNISRVS 194 + S + ++ ++ Sbjct: 171 GEGGKSKVDTTEISDVPELT 190 >UniRef50_UPI00017899D9 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899D9 Length = 503 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 3/164 (1%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V I+DD+ + E V G + G A +A E + P+D+++ DI M Sbjct: 1 MYKVFIVDDEPFIIEGLVDVVDWSKYGIEVVGHAENGRQALEKMAV--VPVDILITDISM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 GL+L+ VI++S D A +K+ + G+ +YL+KP EE + Sbjct: 59 PVMTGLELIEGARKLNRNLKVIILSGFDDFAYLKEGMRLGIENYLLKPINLKELEETIAS 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQT 163 K + D+ +++ L R P+ L + Sbjct: 119 TTDKMNNSRREMRLDEYDINILRSNILYRWITDRIEPEELEERA 162 >UniRef50_C8NE16 DNA-binding response regulator n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NE16_9LACT Length = 255 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 30/235 (12%) Query: 1 MINVLIIDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M ++LI++D+ ++ + V + G A ++A +I + D++L DI M Sbjct: 8 MYSILIVEDEPVIRKGIASLVDFESLGISSVLEAENGKQAIAMI--QEQAPDILLTDINM 65 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +G+ L + + +I ++ + ++ GV DY++KP + E L Sbjct: 66 PKMDGITLAQLARAEFPQLRIIFLTGYDYVDYLLSAVKLGVDDYILKPVTKTEIESLLIK 125 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 K EK + +L+ +S N + ++ + E Sbjct: 126 VVSKLNEEEKQR--------RLLELASKNTSQSESVHFE---------KLILEQLSNPEL 168 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLL 234 S ELA ++ S YL L+ + + Y V RIQ LL Sbjct: 169 SLVELAKQLGFS----SNYLSMLIKKELGKSFQEY------VTDQRIQMAKRLLL 213 >UniRef50_C7GGB1 Putative two-component response regulator n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGB1_9FIRM Length = 551 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 10/177 (5%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ + + +D+ ++ E R + Q GF+ G AS E A +I D+++ DI M Sbjct: 8 MLKIFLAEDEIVMREGIRNNIAWQEEGFEFVGEASDGELAYPMI--QKLKPDILITDIRM 65 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L ++ + ++++S + K+++ GV DYL+KP +++ EA+ Sbjct: 66 PFMDGLELSRIVKQELPDTSILILSGYGEFDYAKEAISIGVEDYLLKPVTSAQLLEAIRR 125 Query: 120 WRQKKMALEKHQYYDQAELDQ-------LIHGSSSNEQDPRRLPKGLTPQTLRTLCQ 169 +K Q + E +Q L S E + K Q + + Sbjct: 126 IAEKIYGRRGRQEETKNEKEQKTLTKRRLFRHIVSGEHSFSEVLKEAREQEIELAAE 182 >UniRef50_C7GE48 DNA-binding response regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE48_9FIRM Length = 532 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 4/134 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VL++DD+ + + + + GF+ GTA +A E + P+DLIL DI M Sbjct: 1 MLKVLLVDDEPFIVQGLSALIDWEKEGFEIVGTAGNGSEAVEFL--KSNPVDLILADIKM 58 Query: 60 QKENGLDLLPVLHNAR-CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 NGL+ L + ++ +++S D K+++ + DY++KP Q S+ L+ Sbjct: 59 PVMNGLEFLKYIRETHLSEAFFVILSGYGDFTYAKEAIKWQCTDYILKPIQKSQLLALLS 118 Query: 119 GWRQKKMALEKHQY 132 +Q + ++ Sbjct: 119 KVKQMQQDKKEESE 132 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 8/179 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M NVL++DD+ M+ ++ + G QC GTAS ++A E F P+D+++ D+ M Sbjct: 1 MYNVLLVDDEYMILSGLQKIINWDDLGLQCVGTASNGQEALE--FVRKHPVDIVVTDVSM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +++G++ + + +V+S + +K+ + G ++L+KP E L Sbjct: 59 PEQSGIEFVQAAQEEDINFNFVVLSGYQEFEYVKEGIRLGAENFLLKPISKEELNETLRK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 K + ++H A D L+ ++ + + L+ + + + AH Y Sbjct: 119 TVSKLDSEKRH-----AHTDTLLFENTLERWVNDDIDNVDLRRILKQVGKPLQAHALYT 172 >UniRef50_UPI0001788C36 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C36 Length = 254 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 90/206 (43%), Gaps = 18/206 (8%) Query: 1 MINVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI +++++D+ ++ + R + ++ P F+ A+ ++A + +D+++ DI M Sbjct: 1 MIKLMLVEDEDIIRKGIRDLIGRVAPDFEVVYEAAHGKEALTYL--ERNVVDVLITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 ++ +GL ++ L A + +++IS D K +L +G+ DYL+KP F AL Sbjct: 59 REMDGLQMVEKLRIAGHEMPIVIISGYGDFVYAKKALQFGIADYLLKPIDRKDFTVALDK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R + ++ G+ + + P + +R L I + D + Sbjct: 119 IRLTLNSSNRYA-----------GGTEPHSEADGGPPSSEGRRMIRKLKAHIAENPDGDL 167 Query: 180 STDELANEVNISRVSCRKYLIWLVNC 205 LA V+++ YL L Sbjct: 168 RLQTLAEMVHLNPS----YLSQLFKQ 189 >UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K690_BACHD Length = 530 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLI+DD+ + E + ++ P G AS +A E +T DL+++DI M Sbjct: 1 MINVLIVDDEQIEREGLKLFLKDRPNIHIVGEASNGRQAIEKAL--ETQPDLMMMDIKMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+ + + +++ I++S+ ++ + YGV +YL+KP AL Sbjct: 59 GVDGVQAVKEIKQQLPETEFIMVSAFDTFEYAREVMRYGVKEYLLKPTTKEDVLTALDRI 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPR 153 ++ + + DQ +L Q + SS Q Sbjct: 119 V-GEIEQAREEKNDQYKLQQRLEQISSFVQTES 150 >UniRef50_Q0SR92 DNA-binding response regulator, AraC family n=10 Tax=Clostridium RepID=Q0SR92_CLOPS Length = 507 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V++ DD+ ++ + + + G + AS ++A + + P+D++L DI M Sbjct: 1 MYKVMLADDENLILQGLENIIEWEELGLEIVNKASNGQEAIDKF--KENPVDIVLTDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + GL+LL L I++S D + K ++ GV +Y++KP E+ L Sbjct: 59 PQVTGLELLKELKKINSDVKFIILSGYDDFSYAKKAIELGVENYILKPIDEEELEKTLKN 118 Query: 120 WRQKKMALEKH 130 K ++ Sbjct: 119 TINKIKQEKEE 129 >UniRef50_C6CUI4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CUI4_PAESJ Length = 452 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 8/183 (4%) Query: 2 INVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + LI+DD+ V + L + GF G A +KA E + S PID+++ D+ M Sbjct: 1 MKTLIVDDEHFVRKGLILTVPWKEYGFDIVGEAENGQKALEQL--SAQPIDVLITDLTMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP-FQASRFEEALTG 119 K +G +L+ + ++V++ D + D++H G +DYL+K + + EEAL Sbjct: 59 KMSGFELMKEVQQQYPHIWIVVLTCHQDFGYVVDAMHAGAIDYLVKTQIEEGKMEEALAR 118 Query: 120 WRQKK---MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 ++ + +A +LI S P +P +P T+ + Q D Sbjct: 119 IEKRISDGTRHRQQAVVQKASCPELILVPSGANGKPDVIPWPASP-TIIPIEQGCFRISD 177 Query: 177 YEF 179 Y F Sbjct: 178 YGF 180 >UniRef50_C6D2L5 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2L5_PAESJ Length = 538 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 21/190 (11%) Query: 1 MINVLIIDDDAMVAELNR-RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +L++DD+A+V E R R + GF+C +A E I ++L DI M Sbjct: 1 MYTILLVDDEAVVREGIRERIPWEELGFRCVADCENGVQALEEI--ERLRPHIVLTDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L + ++ V++++ D + +L V D+++KP A+ F L Sbjct: 59 PFMDGLALSREVMERYPETKVVILTGYDDFEYAQQALKLKVKDFILKPVTAAEFSAMLHK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R ELD+ +D RL L ++++ Sbjct: 119 LR--------------LELDE----EKREREDLARLQSQLHESMPLLKERFLERMSTMAL 160 Query: 180 STDELANEVN 189 + E+A+ ++ Sbjct: 161 TEKEIASRLH 170 >UniRef50_B8FWU4 Two component transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=B8FWU4_DESHD Length = 265 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 84/225 (37%), Gaps = 19/225 (8%) Query: 1 MINVLIIDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DD+ ++ + ++ + Q A A +I+ + D++L DI M Sbjct: 7 MYKLLIVDDEPIIRQGIKQLINFQEQSISEVYEAEDGALALDIV--KEKRPDIVLADINM 64 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L + + V VI+ +L GV DYL+KP S E L+ Sbjct: 65 PNLDGLNLAREIKAVDPEIRVAVITGYDYFEYAVTALKAGVDDYLLKPVSRSDILELLSK 124 Query: 120 WRQ--KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 K+ ++ A L QL HG + R + L + D Sbjct: 125 LVNDLKEKTEQRRAMDSLASLKQLEHGGNEGHHHYREM----------ILQVMNHSLSDP 174 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVY 222 FS LA +N+S YL + + Y T R Sbjct: 175 AFSLGRLAEAINLS----SGYLSTVFKQNFGIPFQEYLTTMRLER 215 >UniRef50_B0NX83 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NX83_9CLOT Length = 539 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 9/186 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI V +++D+ ++ + + V + GF+ G A E A +I D+++ DI M Sbjct: 1 MIKVFLVEDEKIIRKSIKNNVKWEENGFEFAGEAPDGEMALPMI--EKLHPDIVITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L +L K +I++S + K+++ GV DYL KP + EAL Sbjct: 59 PFMDGLELSDILKKKMPKIQIIILSGYGEFDYAKEAIKIGVTDYLTKPVTGEQLLEALNK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +QK ++ + ++ +L + ++ R G + ++ + ++ Q E Sbjct: 119 VKQKLDKKKRQE----EDIKKLQKNIKTQMKNMRYQFFGNLIRGKISVSKLME--QGNEL 172 Query: 180 STDELA 185 D +A Sbjct: 173 GIDLMA 178 >UniRef50_UPI0001C36936 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36936 Length = 527 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +LI+DD++ V + +YV + G+ GTA E A + + P+D+IL DI M Sbjct: 7 YQLLIVDDESFVRQGLSQYVDWEALGYTVAGTADCKETALHFL--EENPVDVILTDIRMP 64 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 GL+LL + +++S + + +L G D+L KP S+ Sbjct: 65 DGTGLELLQECRGIQPDVKSVILSGYGEFEYAQKALRLGSFDFLTKPVDFSQLTAIFLKL 124 Query: 121 RQKKMALEKHQYYDQA 136 LE Q Sbjct: 125 HDTLSQLETQNRNLQE 140 >UniRef50_B0NES4 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NES4_EUBSP Length = 509 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 4/147 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ +LI+DD+ ++ E + G Q GTA +A +I D D++L DI M Sbjct: 1 MLKLLIVDDEKIIRETMAGLIDWNSLGIQLIGTARDGIEAYNMIL--DEYPDIVLTDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GLDL+ +H + I++S + K ++ YGV YL+KP + E+L Sbjct: 59 PGLSGLDLIQKIHGINKDTHFIILSGYGEFEYAKKAMQYGVKHYLLKPCNEEQIIESLQD 118 Query: 120 -WRQKKMALEKHQYYDQAELDQLIHGS 145 + L Q + + I+ + Sbjct: 119 VIKDYTNYLATRGETPQTLISRNINQN 145 >UniRef50_UPI000178A004 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A004 Length = 514 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 81/179 (45%), Gaps = 6/179 (3%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 VLI++D+ + + R + + G + G AS +A ++ ++ D+++ DI M + Sbjct: 8 VLIVEDEIPLRQELRLFPWEACGAEWIGEASNGSEAMQLC--AERTPDVVITDITMPVMD 65 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIK-PFQASRFEEALTGWRQ 122 G+ L+ L +I+++ +D ++++L G ++Y++K + ++A+ R Sbjct: 66 GIALIRELRKRHPHVQIILLTCHSDFHYVQEALRLGALEYILKVSLEEEELKQAMDKVRA 125 Query: 123 ---KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 K+ + +H +Q +L + G + Q+P ++ + + D Sbjct: 126 AVVKERMVLEHARREQRQLQAALFGKLLHGQEPAGSDWQSMTLSVDRPIRLVRLQLDIP 184 >UniRef50_D1PQV2 Putative two-component response regulator n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQV2_9FIRM Length = 530 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 21/213 (9%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VLI DD+ VA L ++ + Q G +C G + A + I D+++ DI M Sbjct: 1 MLKVLIADDEPRVAMLVKQLIHWQEQGLECVGLFQDGQSALDAI--RQLHPDIVITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L+ + + +VIS + ++ YGV DYL+KP L Sbjct: 59 PVLSGLELIEKTLESEPQVRFVVISGYRYFEYAQRAIKYGVQDYLLKPIDEEELNRVLGK 118 Query: 120 WRQKKMALEKHQY---------------YDQAELDQLIHGSSSNEQDP-RRLPKGLTPQT 163 +K + Q D+ L QL+ G ++ + G Sbjct: 119 ICAEKADQQSRQEHLTRMENSFRNSRRLLDREILQQLLSGGITDVGTLNQDYGTGFLEGC 178 Query: 164 LRTLCQWIDAHQDYEFSTDELANEVNISRVSCR 196 + L +D D E D A + + ++ R Sbjct: 179 YQALVVKVDRATDTEPHAD--AERLLMDKLRAR 209 >UniRef50_UPI00016C0713 response regulator receiver protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0713 Length = 277 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 83/199 (41%), Gaps = 4/199 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M V+I DD+ ++ + + G A +A E+I D+++ DI M Sbjct: 1 MFKVVIADDERIIRMGLKSLRWDNYNMEIVGEAKNGLEAIELI--DSLKFDILISDIKMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + GL++ L + +I +S + K++L GV DY++KP + + Sbjct: 59 GKTGLEIAKYLKEIKSNIKIIXLSGYGEFEYAKEALALGVFDYILKPSTPAEILDTAARA 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R + + K + Y + ++ N + Q ++ + ++I ++ + E + Sbjct: 119 RDELIKESKEKEYVEEMEQKI--TDYQNIVGAKIAINNDKNQDIKKILEYIYSNYEKELT 176 Query: 181 TDELANEVNISRVSCRKYL 199 LA++ + + V Y+ Sbjct: 177 LQVLADQHHFTSVYLSSYI 195 >UniRef50_C0E8C5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8C5_9CLOT Length = 510 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 69/169 (40%), Gaps = 12/169 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQC-----CGTASTLEKAKEIIFNSDTPIDLILL 55 MI +L+++D+ +A + + + C +A ++A E + P D++ Sbjct: 1 MIRILVVEDEPPIARGIIKLIQS---YDCGQEMDIQSAINGKRALEQL--ESAPFDIVFT 55 Query: 56 DIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEE 115 DI M G++L + + I+IS D + ++ Y V DY++KP + Sbjct: 56 DIKMPLMTGIELAEQIQKRYPEIITIMISGYQDFDYARKAIQYKVFDYILKPVKKEDMHH 115 Query: 116 ALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTL 164 L +K + + +++++ + I + +R L L Sbjct: 116 LLDHVFEKINSRNLQK--NRSDIFRAIQNEAPAPATSQRGETQLYAVLL 162 >UniRef50_Q39VW2 Response regulator receiver domain protein (CheY-like) n=3 Tax=Geobacter RepID=Q39VW2_GEOMG Length = 219 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 20/229 (8%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL +DD+ + E + ++ C + ++A + + D++L DI M Sbjct: 9 MTVLFVDDEEIAREQMKMVLSSFCKNTIC--VGSADQALAAL--QEHHPDIVLTDIRMPG 64 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G++LL + V+++S+ +++ + D+ Y YL+KPF E L+ Sbjct: 65 LSGIELLNAVKQKDASVAVVIVSAHSESEYLLDAFRYKADGYLLKPFNFHEMLELLSDIA 124 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 +K A + D L+ G + + + +DA + + Sbjct: 125 TQKEAASSERKQGPDNRDFLL--------KILDTLGGRRAEIMEYVINHLDADNLFHGTY 176 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEH 230 DE+A ++ S+ + ++ ++L + YG YR+ + Sbjct: 177 DEVAEALSASKPTVVATFQIMLEKNVLT-RLKYGT-------YRMNVDA 217 >UniRef50_B5YAV6 Two-component response regulator n=2 Tax=Dictyoglomus RepID=B5YAV6_DICT6 Length = 496 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 73/154 (47%), Gaps = 10/154 (6%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 VLI DD+ ++ + ++ V GF+ G A +A + + DL ++DI M Sbjct: 3 YKVLIADDEPVIRQGLKKIVNWNALGFKIVGEAEDGVEALDKV--RKLDPDLCVIDIRMP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL+L+ + ++ + +I+++ + + ++ GV Y++KP ++ LT Sbjct: 61 GMDGLELISEIRKSKSEIKIIILTGYPEFEYAQKAISLGVQSYMLKPVDPQILKDELTKI 120 Query: 121 RQKKMALEKHQYY----DQAELDQLIHGSSSNEQ 150 + LE+ ++ + L++L+ G S + Sbjct: 121 YED---LERKKFLFEGSKEKILEKLLKGQISLTE 151 >UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT85_9FIRM Length = 405 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 7/143 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DD+ + + + + ++ C A +A E I D IL+DI M Sbjct: 1 MWKVLIADDEPKIRQGLKSVLEEMKLPITVCAEARNGMEALEKI--EQFQPDFILMDICM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL-- 117 K +G+ L L VIVIS + + K ++ GV +YL+KP + A+ Sbjct: 59 PKLSGIQFLEELRKLDKNCPVIVISGFNEFSYAKQAIKLGVSEYLLKPIAEEELQAAVVK 118 Query: 118 --TGWRQKKMALEKHQYYDQAEL 138 +QK+ + + + Q + Sbjct: 119 VTEEIKQKRKSEKFMELVKQQMI 141 >UniRef50_C5EE52 Two-component response regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EE52_9FIRM Length = 529 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DDDA++ ++ + + G + G A ++A ++ + L+L DI M Sbjct: 1 MYRVLIADDDAIIRRGLKKTIDWESYGMEIVGVACDGQEALSML--KELAPHLLLTDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + +G++L+ VI++++ D K+++ + DYL+KP E++ Sbjct: 59 PQMSGIELMKEARILYPDIQVILLTAYEDFEYAKEAIKHKACDYLLKPLAREELLESVLN 118 Query: 120 WRQKKMALEKHQYYDQAEL 138 +++ + + + + Sbjct: 119 TKKQFESRMRDTHRKNKSI 137 >UniRef50_A6TMD1 Response regulator receiver protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TMD1_ALKMQ Length = 253 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 91/239 (38%), Gaps = 24/239 (10%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIP-GFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DD+ + + ++++ + FQ A ++A E + +L L+DI M Sbjct: 1 MFKVLIADDEPKIRKGLKQWIEESSYKFQVVAEAKNGKEALEYTIKA--SPELFLVDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGLD + + S V++I+ D ++ + V DYL+KP + F L Sbjct: 59 PMMNGLDFISQMKKISPNSIVVIITGYDDFQYAHKAIKFNVFDYLLKPVSKNEFNNLLRK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAH-QDYE 178 + D+AE+ + +R++ +ID H D + Sbjct: 119 VTETLGNR-----ADEAEV-----------MEVTTEKNAAYSSMIRSVKDYIDDHFDDSQ 162 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 +A + S+ K + + + + Y R +I H++ + Y Sbjct: 163 LDLSHIAQLFDTSKSYISKRM----KQELGKSFVEYLTDIRLEKAKKILENHHARMTMY 217 >UniRef50_C6IYA1 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYA1_9BACL Length = 509 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 3/142 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V I+DD+ + E V G + G A ++A + + P+D+++ DI M Sbjct: 1 MYKVFIVDDEPFIIEGLYDIVDWPQFGLEIVGHAENGQQALDALATK--PVDVLITDISM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGL L+ + VI++S + +K+ + G+ +YL+KP E L Sbjct: 59 PVMNGLTLISEARKLHKELKVIILSGFNEFDYLKEGMKLGIENYLLKPINVEEMESTLRN 118 Query: 120 WRQKKMALEKHQYYDQAELDQL 141 QK +++ + YD ++ L Sbjct: 119 TVQKLDSVDTNGLYDAYDIQIL 140 >UniRef50_D2LTH2 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTH2_BACS4 Length = 414 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 9/192 (4%) Query: 1 MI-NVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIY 58 MI +LI+DD+ ++ + L+ + + GTA +A ++ D +D+IL D+ Sbjct: 1 MILKMLIVDDEPIICKGLHTTIDWRDIDIEVVGTAHDGNEAVTLM--KDQHVDIILTDVC 58 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 M + +GL L + K+ +I+IS + + +L GV DYL+KP + Sbjct: 59 MPEMDGLALSEHIITEYPKAKIIMISGFDEFKYARQALRLGVEDYLLKPVNIDELLTLVK 118 Query: 119 GWRQKKMALEKHQYYDQAEL--DQLIHGSSSNEQDPRRLPKGLT-PQTLRTLCQWIDAHQ 175 ++ + +K + + + ++H + K LT Q R + + + Sbjct: 119 NIKKVIIEDKKEEIQKEKMITSQWVLHYLFNAPLSLEMKHKSLTNAQHYRIVVSVMKDYD 178 Query: 176 D--YEFSTDELA 185 +ST E+A Sbjct: 179 QKMRHYSTKEIA 190 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 77/192 (40%), Gaps = 14/192 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M +LI+DD+ + EL R ++ Q G+ C A A ++ DL++LD+ M Sbjct: 72 MAKILIVDDEPRIRELIREHL-QYAGY-VCEEAGDGSAALSLLSGGG--FDLVILDVMMP 127 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+ L + + VI++++ + L G DY++KPF + Sbjct: 128 FMDGMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAV 187 Query: 121 RQKKMALEKHQ----YYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + M + + + +D H +D PK L ++ +++ Sbjct: 188 LNRTMPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFD------LLVFLASNKG 241 Query: 177 YEFSTDELANEV 188 S +++ +V Sbjct: 242 IALSREKILQKV 253 >UniRef50_C6IXK5 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXK5_9BACL Length = 509 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPG-FQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M NV+I++D + R + + FQ TA+ E+A E++ P+DL+L DI M Sbjct: 1 MYNVMIVEDSKPILRNIRTLLGSLELPFQVTATAANGEEALELV--RQQPVDLVLTDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +GL + R + I+IS D + +++ V DYL+KP + + E + Sbjct: 59 PKLDGLAFIEQAKQIRPQLLFILISGYNDFEYTRKAINLQVFDYLLKPVERKQLSEVMER 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++ + + +AEL Q I E+ + L + + A + Sbjct: 119 ALERL----RSRIPSEAELFQEIVAPEVYEELQLGDQFRHYGKLLILIRRQPFAGVRELW 174 Query: 180 STDELANEV 188 DEL + Sbjct: 175 RADELQRRL 183 >UniRef50_C6JAS9 Predicted protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAS9_9FIRM Length = 515 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 9/195 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQ--IPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 + VL+++D+ + R + + G AS E+ E F +L+L DI M Sbjct: 1 MKVLVVEDEFYARKAMIRQIKKYDQDGLFEISEASNGEEGWE--FCEKYKPELVLTDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +G+ LL + N + VI++S+ +D + ++ G DYL+KP + E L Sbjct: 59 PKMDGIQLLQEIRNNELEIKVIILSAYSDFEYARSAIVNGASDYLLKPIDDTALTECLNK 118 Query: 120 W-----RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAH 174 + ++K AL + + I S + + + + + PQ + ++ Sbjct: 119 FVTQHKIERKEALLSRKDMATQYILNSIQESKYSGFIEKNMFERVFPQYQLGVFLFLHDK 178 Query: 175 QDYEFSTDELANEVN 189 E EL Sbjct: 179 PRQEIFLTELEESCG 193 >UniRef50_C6D3P9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3P9_PAESJ Length = 483 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 7/195 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI+DD+ VA + + + G+Q G A A I + ++++ DI M Sbjct: 1 MYRVLIVDDEPWVAYGISKLIDWETEGYQVIGQAYDGSSALRFI--EEHRPEVVVSDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NG++LL + + ++VI+ S ++ + +L G DYL+K + + E + Sbjct: 59 PGLNGIELLNEIAKQKLGTEVILASGYSEFEYAQQALRLGAFDYLLKQIEKEQLLETIMR 118 Query: 120 WR---QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRT-LCQWIDAHQ 175 R ++K +L +L+ + +G+ P+ L + + Sbjct: 119 LRGHLEQKKLDAGDPDAPLNDLFELLDADGNTTIGQYLCNRGMKPEHSNVLLINAVFWYA 178 Query: 176 DYEFSTDELANEVNI 190 S++ +A + Sbjct: 179 TVTDSSERVAKLSGM 193 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 102/212 (48%), Gaps = 13/212 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +++DD+ ++EL +++ G + AST +A+ I + DL LLD+ + Sbjct: 1 MRAIVVDDEKNISELLSILLSEY-GIE-SDIASTYSEARSFI--QEKYYDLALLDLRLPD 56 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+D+L + K++V++I++ A + T +++ G DY+ KPF + + + Sbjct: 57 GSGIDILKQIKEKNPKTEVVIITAFASSETAVEAIKLGAYDYISKPFNINDLRLIIRNVK 116 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 +K + LE+ ++ E + + G S Q+ + K + P + L + Sbjct: 117 EK-IDLERRICVEEEERLEGLAGKSQAIQNVKDTIKKIAPYDINVLIV------GESGTG 169 Query: 182 DELANEVNISRVSCRKYLIWLV-NCHILFTSI 212 E+A ++ I R+S RK ++ NC L + Sbjct: 170 KEVAAKM-IHRLSSRKNKPFVAINCASLPAEL 200 >UniRef50_A1ZP21 Response regulator of the LytR/AlgR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZP21_9SPHI Length = 263 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 13/192 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI+DD+ + E+ +A+ G Q G AS E+A ++I DL+ LDI M Sbjct: 3 IKVLIVDDEPIAREMINILLAEHTGLQVVGEASNGEEALKLIDTQ--TPDLLFLDIQMPG 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+ L A ++ +++ + +DYL+KPF RF + + + Sbjct: 61 MTGISLAQKF--AGFYGHLVFVTAYD--EYALAAFELNAIDYLLKPFTKKRFHQTIEKVQ 116 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 K + ++ E D+L+ + Q ++ L L +++ + Sbjct: 117 SKF----QQASLNRVE-DKLLQLAQDYSQLKAQVQPTLIDSNDTYLSRFVARQANKIVFI 171 Query: 182 D--ELANEVNIS 191 D E+ V S Sbjct: 172 DIVEVEAIVGAS 183 >UniRef50_C6IKI2 Sensor protein n=3 Tax=Bacteroides RepID=C6IKI2_9BACE Length = 1450 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 88/195 (45%), Gaps = 10/195 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +L+++D+ + + +++ + TAS ++ + D DLI+ D+ M Sbjct: 1191 LTILVVEDNEELKTFLKNILSE--NYTVI-TASNGKEGWQ--HAVDNIPDLIISDVMMPV 1245 Query: 62 ENGLDLLPVLHNAR--CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+++ + C +IV+S+ A L G+ DY+ KPF A+ + + Sbjct: 1246 MDGLEMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIAS 1305 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD-YE 178 +++ +L++ E ++ + P+ P Q ++ + ++I+ D E Sbjct: 1306 LLRQRKSLQEIYMAKLTEGKEIAVAEALTPSQPQITPY--DEQFMQKVMEFIEEQMDNAE 1363 Query: 179 FSTDELANEVNISRV 193 + DE A + +SR Sbjct: 1364 LTIDEFAEHLMLSRT 1378 >UniRef50_C1CP35 Response regulator n=28 Tax=Streptococcus RepID=C1CP35_STRZT Length = 428 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 3/141 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL++DD+ MV E +R + + T S ++A E + + P+D+I+ D+ M Sbjct: 1 MYKVLLVDDEYMVTEGLKRLIPFDKWDMEVVATVSHADEALEYV--QENPVDVIISDVNM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + GLD++ + + I++S + +K +++ VVDYL+KP L Sbjct: 59 PDKTGLDMIREMKEILPDAAYILLSGYQEFDYVKRAMNLSVVDYLVKPVDKVELGNLLEK 118 Query: 120 WRQKKMALEKHQYYDQAELDQ 140 + K ELD+ Sbjct: 119 IAGQLGERGKKSQTLSQELDE 139 >UniRef50_B0NHY9 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NHY9_EUBSP Length = 507 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 72/135 (53%), Gaps = 6/135 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + + +I+D+A + E + + +I ++ G A +K E+I DL++LDI M Sbjct: 1 MRIAVIEDEAPIREGMSKILKKINENYELVGKAENGKKGLELI--RKEKPDLVILDIRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL +L ++ + IV+S+ +D A + ++ G+ +YL+KP + + ++AL Sbjct: 59 DMDGLTMLSIVREEGIECKAIVLSAYSDFAYAQRAIELGIENYLLKPIKIAELKKALE-- 116 Query: 121 RQKKMALEKHQYYDQ 135 Q ++ + K Q +Q Sbjct: 117 -QAEVNISKEQSKEQ 130 >UniRef50_UPI000178A7F3 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A7F3 Length = 349 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 4/189 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +L++DD+ M+ + + Q P TA +A E I + D I DI M Sbjct: 1 MYRILVVDDEPMIRMGLAKLITQTDPAMIQAETAGNGMEALEAIQTA--RPDFIFTDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +GL+L L+ V+VIS D + + YGV +YL+KP S + Sbjct: 59 PKMDGLELSKQLYETYGDITVVVISGYGDFEYAQKCMSYGVKEYLLKPVTKSVVHNTMNK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++++++ Q + L +L E L L+ + + + + Sbjct: 119 LMADRISMQEKQRF-YFPLSKLEDWLEQLELAVWHLQMNDIQMKLQEIEDYCNERRFESI 177 Query: 180 STDELANEV 188 EL +E+ Sbjct: 178 QLQELLDEL 186 >UniRef50_Q9KB26 BH2109 protein n=1 Tax=Bacillus halodurans RepID=Q9KB26_BACHD Length = 525 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 7/158 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL+ DD+ V + + + G++ A E A +++ + DL++ DI M Sbjct: 1 MYKVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLV--QEIKPDLVITDIRM 58 Query: 60 QKENGLDLLPVLHN-ARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 +GL L+ ++ + I+IS D + + ++ +G VD+++KP E AL Sbjct: 59 PVFDGLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALI 118 Query: 119 GWRQKKMALEKHQYYDQAE--LDQLIHGSSSNEQDPRR 154 EK DQ + LDQ+ S + Sbjct: 119 KLAATLDQ-EKATNSDQEKVLLDQIFIHSLGENKKENE 155 >UniRef50_A8RM75 Putative uncharacterized protein n=2 Tax=Clostridium RepID=A8RM75_9CLOT Length = 253 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 81/198 (40%), Gaps = 14/198 (7%) Query: 1 MINVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V++++D+ MV + G A+ E+ E+ D+I+ D+ M Sbjct: 1 MYKVIVVEDETMVRRGIILTIDWAALDCVIAGEAANGEEGAELAV--RLSPDIIVTDVKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + +G++++ L C++ I++++ +D + +L GV DYL+KP + E+A+ Sbjct: 59 PRMDGVEMITKLREQGCRAKFIILTAYSDFKYAQSALRLGVSDYLLKPLRDGDLEQAVRH 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R++ + A H K + + ++I H + Sbjct: 119 IREQMEERPAKEEETDAAPVLRFHS-----------DKKSKNKYVEAATRYIREHYREDI 167 Query: 180 STDELANEVNISRVSCRK 197 + +A+ + IS + Sbjct: 168 TISTVASFLEISEGYLSR 185 >UniRef50_C6D2K0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2K0_PAESJ Length = 519 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 82/198 (41%), Gaps = 13/198 (6%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL++DD+ E + + + GF+ E+A +I ++ DL++ DI M Sbjct: 1 MYRVLLVDDEPFAIEGLQLLIDWEKNGFEVESACGDGEEAARLI--RESKPDLVVTDIRM 58 Query: 60 QKENGLDLLPVLH-NARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 +GL+L+ + ++ +V+S +D + +L GV YL KP + +E L Sbjct: 59 PIMDGLELISQMRLEGHKQTKFVVMSGYSDFEYARRALQLGVSHYLTKPIMSDEADEVLE 118 Query: 119 GW--------RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQW 170 R++K + + L L+ G ++ D + K ++ +C Sbjct: 119 CLNKVLGEENRRQKAVRYTERCAQRRALTALLRGEELSDADQSSI-KRISADAAGWVCIR 177 Query: 171 IDAHQDYEFSTDELANEV 188 + + S E E+ Sbjct: 178 VAVDESELASASEAVEEL 195 >UniRef50_B8I4I1 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I4I1_CLOCE Length = 525 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 22/209 (10%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VL++DD+ V E + + + GF+ CG AS E A EI+ + DLI+ DI M Sbjct: 1 MLKVLLVDDEPYVLEGLKVMLDWEAHGFRICGEASNGEDALEIVRVCN--PDLIMTDISM 58 Query: 60 QKENGLDLLP-VLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + +GL+L+ N + + +++S D + K ++ Y +YL+KP + +T Sbjct: 59 PRIDGLELIRLSTENLKSTAKFVILSGYDDFSYAKRAMLYNASNYLLKPLDDVELDSVVT 118 Query: 119 GWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 ++ K +L + + S + P + + +D +D E Sbjct: 119 KLAEQIKKERKETENINKQLSFIANQSIIRLINGDNKPSLIG-----RVGMLLDIAEDEE 173 Query: 179 F--------STD-----ELANEVNISRVS 194 F S D E E+NI+R + Sbjct: 174 FRCILFEIDSADSWVQGEERTELNINRTT 202 >UniRef50_Q9KDT8 BH1123 protein n=1 Tax=Bacillus halodurans RepID=Q9KDT8_BACHD Length = 526 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V+IIDD+ V ++ + + G +C G A+ + +I+ +T ++L DIYM Sbjct: 1 MWKVVIIDDEEHVVRGLKKIISWKALGCECVGEAANGRRGLDIV--RETSPHIVLTDIYM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 GLD++ +L +V+++S ++ + ++ + DYL KP E L Sbjct: 59 PIMYGLDMIQILREDGFDGEVVILSGYSEFEHARKAMQLNITDYLSKPASVDTIETVLKR 118 Query: 120 WRQKKMALEKHQYYDQA 136 K ++ Q Y Q Sbjct: 119 VINKLEEKQRQQGYLQE 135 >UniRef50_C4FUN9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUN9_9FIRM Length = 493 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 7/152 (4%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + VLI+DD+ M+ + R + Q G Q GTA ++A +++ S +D+++ D+ M Sbjct: 11 LRVLIVDDEYMIVKGLERLIRWQELGLQLVGTAGNGQEALDLM--SHQAVDIVITDVNMP 68 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL--- 117 G+D + I +S + +K + G +YL+KP L Sbjct: 69 NVTGIDFISQAKELGQDFAFIFVSGYQEFEYVKRGMELGAKNYLLKPIDKVELHRVLSQV 128 Query: 118 -TGWRQKKMALEKHQYYDQAELDQLIHGSSSN 148 R K+ + ++QA+L + + Sbjct: 129 AQEIRDKRALAQVISDHEQAQLTSWLETGQGS 160 >UniRef50_C6LGW7 DNA-binding response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LGW7_9FIRM Length = 504 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 4/155 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +LI++D+ + + ++ G A ++ E+I DL++ DI M Sbjct: 1 MRILIVEDEIKIRTGMSKLISAHTAHTIVGEAKNGKEGLELIL--RLHPDLVISDIRMPV 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL++ + A K I++S ++ + +L YG DYL+KP A E L + Sbjct: 59 MDGLEMQEAANRAGVKCHFIILSGYSEFEYAQKALRYGADDYLLKPLAAEDVTEVLEKIQ 118 Query: 122 QKKMALEKHQYYDQAEL--DQLIHGSSSNEQDPRR 154 EK L D L+ G + E+D ++ Sbjct: 119 NLVREEEKRTVQSAEGLLRDILLGGRTITEEDYKK 153 >UniRef50_A8RPD4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPD4_9CLOT Length = 532 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 3/141 (2%) Query: 2 INVLIIDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + VLI DD+ + L + + Q + G A A E++ D+++ DI M Sbjct: 1 MKVLIADDEINIILLIKSLIDRQKTDVEIAGEAGDGITALEMV--RQLKPDVVITDIRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+DL+ + + + ++IS ++ + ++ YGV DYL+KP + + L Sbjct: 59 GMNGMDLIRHVREEQIPVEFVIISGYSEFEYARSAIQYGVSDYLLKPIKKDELNDVLAKL 118 Query: 121 RQKKMALEKHQYYDQAELDQL 141 ++ + + Q D+L Sbjct: 119 ESQRASRREQQMQFNLMEDRL 139 >UniRef50_C6CTB8 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTB8_PAESJ Length = 530 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 5/153 (3%) Query: 2 INVLIIDDDAMVAE-LNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + VLI++D+ ++ E L R+ + G G A +A + + D++L D+ M Sbjct: 1 MKVLIVEDEPLLREGLIRKIDWETLGLTLAGEAGDGFEAMSRLVSCQ--PDIVLTDVRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL + + ++IS + ++++L V DYL+KP + L G Sbjct: 59 GMDGLQFINQARTISPNTKFVIISGFNEFEYVREALLNHVKDYLLKPIDKEKLRVLLAGL 118 Query: 121 RQKKMALEKHQY--YDQAELDQLIHGSSSNEQD 151 ++ A + + LD++I S D Sbjct: 119 VEELRAERQQEADLSKLNALDEMIRQSHLQPLD 151 >UniRef50_A7VQN5 Putative uncharacterized protein n=2 Tax=Clostridium leptum DSM 753 RepID=A7VQN5_9CLOT Length = 514 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 77/160 (48%), Gaps = 5/160 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPG-FQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + +++++D+ + E + + +I + G A + E+I ++ DL++ D+ M Sbjct: 1 MRIVVVEDEMCIREGLVKLLERIDRAYLVVGQADNGKSGLELI--KESKPDLVITDVQMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL++L L + VI++S+ ++ + + ++ GV +YLIKP + ++L Sbjct: 59 IMDGLEMLRCLQEKQPLPKVIILSAYSEFSYAQQAIKLGVSEYLIKPIIINELTQSLRSI 118 Query: 121 RQK--KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKG 158 Q+ + + +K + + L+++ G S + Sbjct: 119 EQQLAEESNKKGEAPELRSLEEVFSGIQSGRLPFTEKIRN 158 >UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/response regulator n=3 Tax=Deltaproteobacteria RepID=C0QA67_DESAH Length = 455 Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 9/172 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 IN+L++DD+ + L + +A +C TA +A +I D+I+LDI + Sbjct: 11 INILVVDDEKSIRRLLEKELASAR--RCITTAGNGREA--LIAIRKNVFDVIVLDISLPD 66 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG++L+ H +I+I+ D +++ G DY+ KPF R E+ + Sbjct: 67 ANGIELMSRFHEEILGVQIILITGYGDVDDAVEAMKTGACDYITKPFDLGRLEQVIEKAY 126 Query: 122 Q-----KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLC 168 Q KK L++ + + I G S+ ++ R L + P ++ L Sbjct: 127 QIGSLHKKKFLKQQGLHKKKIFPDQIVGHSAAMEEVRFLIGKVAPTSVPVLV 178 >UniRef50_B5CZ21 Sensor protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CZ21_9BACE Length = 1393 Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 83/206 (40%), Gaps = 18/206 (8%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 ++LI++D+ + + ++ + S ++A ++I DL+L DI M + Sbjct: 1133 SILIVEDEDEIRN---YLLTELGSHFRVLSCSNGKEALDLIM--HHMPDLVLSDIMMPEV 1187 Query: 63 NGLDLLPVLHNA--RCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+ LL L VI++++ + L G Y+ KPF + Sbjct: 1188 NGITLLRKLKQNIKTNHIPVILLTAKNSEKDYIEGLSLGADAYIAKPFNLDILITTIENL 1247 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAH-QDYEF 179 + + L + Q + D + P+ + ++ + + I+ + + + Sbjct: 1248 IKNREILRNNFSGKQEQNDNI----------EVAQPQSADEKLMQKVLKVINKNLNNPDL 1297 Query: 180 STDELANEVNISRVSCRKYLIWLVNC 205 + + +A EV ISRV + L L N Sbjct: 1298 NAEMIAAEVGISRVHLYRKLKELTNQ 1323 >UniRef50_Q4L8V4 Sensory transduction protein lytR n=60 Tax=Bacilli RepID=LYTR_STAHJ Length = 256 Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 77/198 (38%), Gaps = 13/198 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + LI+DD+ + + +I GF A +E+ E + + DL+ LDI + Sbjct: 1 MKTLIVDDEPLARNELHYLLNEISGFNVIDEAENIEETLEKLLSE--TYDLVFLDINLMD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 E+G+DL + + +I ++ + +DY++KPF+ R E+A+ Sbjct: 59 ESGIDLAQKIKKMKQPPHIIFATAHDTF--AVKAFELDAIDYILKPFELERIEQAVNKV- 115 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLC-QWIDAHQDYEFS 180 KHQ + E+D + S+ + L + I + + + Sbjct: 116 -------KHQISNSNEIDHITSEPSTLSMQQDDRQENEDQTVLPIEMNERIYVIRKDDIT 168 Query: 181 TDELANEVNISRVSCRKY 198 + N + + R Y Sbjct: 169 AVSVNNGITTINTTHRTY 186 >UniRef50_C6CUK8 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CUK8_PAESJ Length = 519 Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 3/135 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M NVL++DD+ +V E + + + GF TAS +A E + L++ DI M Sbjct: 1 MYNVLLVDDEPLVMEGMQMLIEWENYGFTIKDTASNGFEAMEKLTREH--YHLVITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + +GL+L+ + +I++S + K +L +GV YL+KP + E LT Sbjct: 59 PEMDGLELIGQFSEQERRPAIIILSGHNEFNYAKQALRHGVNQYLLKPVDVTELTETLTS 118 Query: 120 WRQKKMALEKHQYYD 134 R + + D Sbjct: 119 IRGQLDQTQSRLSAD 133 >UniRef50_Q893H5 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q893H5_CLOTE Length = 259 Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 80/215 (37%), Gaps = 22/215 (10%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIP-GFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M ++I DD+ + + + TA E+A ++I ++IL+DI M Sbjct: 1 MFRIVIADDEDTIRNGLKNLIESYELNLSVIATAKDGEEAMKVI--EKYHPEIILMDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGLD++ +H + +I+IS + + +L GV +YL+KP F++ L Sbjct: 59 PFMNGLDVIKGIHERNKDAKIIIISGYSQFEYAQKALELGVFNYLLKPINYRDFKDILIK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 E+ ++ G E ++ + E Sbjct: 119 AMDSYSK-------RMWEISKIKEGKEKIESCKDVGNLAIS--------YIKKNFSNNEI 163 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHY 214 S + +A + IS + YL ++ + Y Sbjct: 164 SLNLVAQQFYIS----QSYLTRVIKQKTGVSFTDY 194 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 16/199 (8%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VLI+DD+ + R + G++ A T E+ ++ ++TP DLI LDI++ Sbjct: 4 RVLIVDDEDGIRFSLRGILED-EGYEV-AEAETGEEGLKL--ATETPPDLIFLDIWLPGM 59 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFE----EALT 118 +GL++L L A VI+IS + T +++ G D++ KP + +AL Sbjct: 60 DGLEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALE 119 Query: 119 GWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 +R ++ Q+ ++ G+S++ + R + P L Sbjct: 120 YYRLRRENQALRSRLTQSTTVEM-TGNSASIVELRGQIGRVAPTDAWVLI------TGEN 172 Query: 179 FSTDELANEVNISRVSCRK 197 + E+A +I S RK Sbjct: 173 GTGKEIAAR-SIHASSRRK 190 >UniRef50_A7B1D9 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1D9_RUMGN Length = 508 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 70/135 (51%), Gaps = 6/135 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + +++++D+A + E + +++I P ++ G A+ E ++I + DL+++DI M Sbjct: 1 MRIVVVEDEAPIREGMAKLLSKINPEYELVGKAADGEAGYQLI--RELNPDLVIMDIRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 K +G+ ++ L K I++S+ ++ + ++ YL+KP + + AL Sbjct: 59 KMDGIAMMKKLREENIKCKAIILSAYSEFQYAQKAIELKADSYLLKPIKIPELKSAL--- 115 Query: 121 RQKKMALEKHQYYDQ 135 +Q + + + Q +Q Sbjct: 116 KQAEREISEDQGTEQ 130 >UniRef50_A9U6E4 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U6E4_PHYPA Length = 563 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 13/200 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +L++DD ++ E R + + FQ GTA E+A E+ L+L+D+ M Sbjct: 358 IRLLVVDDHPVIRESLRTLLEEQQDFQVVGTAEDGEQAIELC--RQLRPQLVLMDVDMPI 415 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ + + ++++++ D ++L GV YL+K Q E + Sbjct: 416 VDGISASRTIKESWPHIRILILTTFEDTKQALEALRSGVDGYLLKSMQPLELAETIRTVH 475 Query: 122 QKKMALEK---HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 + +E+ H+ + Q E D + LTP+ L L Sbjct: 476 RGGTLIEQGMSHKLFAQLEAD---NSGDDPSSIKASSAYDLTPRELEILQFV-----SKG 527 Query: 179 FSTDELANEVNISRVSCRKY 198 +A+ +S + R Y Sbjct: 528 LRYKSIASNFYLSDGTVRNY 547 >UniRef50_C1I3A1 Response regulator receiver protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I3A1_9CLOT Length = 249 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 100/241 (41%), Gaps = 34/241 (14%) Query: 1 MINVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+N+L+++D+ + + R + I F G+ S ++A +I P D+I+ DI M Sbjct: 1 MLNILVVEDEGPIRDWIRYTIKNISDDFNIIGSVSNGKEAYDIAL--KNPPDVIITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIK----PFQASRFEE 115 +G++L + + +I++++ A+ + K+++ GV +YLIK P + S Sbjct: 59 PVMDGIELSKRIKEVIPEVYIIILTNFAEFSYAKEAISCGVYEYLIKSDIRPKELSEILN 118 Query: 116 ALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 + + K+ ++ + D+ + + +++ ++ID + Sbjct: 119 KINAIIKSKIEIKDEEKLDKHNI----------------VKPKAYSRSIEKALKYIDDNY 162 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLK 235 S ++A + +S +Y L + Y YRI+ L+K Sbjct: 163 KKHISLMDVAKHIYLSH----EYFSRLFKEEVGENFSTYLTI------YRIKKAKE-LIK 211 Query: 236 Q 236 Sbjct: 212 N 212 >UniRef50_Q39UC6 Response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase n=8 Tax=Desulfuromonadales RepID=Q39UC6_GEOMG Length = 350 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 14/199 (7%) Query: 1 MI-NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ +L +DD+ M+ +L +++ G++C A + E+A+ ++ N+ IDL +LDI M Sbjct: 1 MLPTILTVDDEEMIRDLMVTALSR-EGYRC-FQAGSAEEARSVLQNNK--IDLAILDIMM 56 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G D L L ++ V+++++ +D T +H G DY++KPF R + Sbjct: 57 PGLSGDDFLKELKVLSPETVVLMVTALSDTETAMKCIHLGAYDYILKPFDIDRVLLTIHN 116 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +K+ L +++ Y QA L++ + + + TL L + +DA + Sbjct: 117 ALEKQRLLAENREY-QANLEKKVDEQTRQIRMAMEDLNLAYNHTLTALVRALDAREKETG 175 Query: 180 STDE--------LANEVNI 190 S E L + + Sbjct: 176 SHSERVMTYTLLLGEAMGV 194 >UniRef50_C2KZS5 Response regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KZS5_9FIRM Length = 249 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 86/213 (40%), Gaps = 22/213 (10%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + ++I+DD+ + + R ++ G + G + A ++ S+ D+++ DI M + Sbjct: 1 MKIMIVDDEPKIRQGLRTLLSGQEGMEVVGAYESAISA--LLAISEKNPDVLITDIRMPE 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGLD + + + +I++S ++ + + ++ YGV YL KP AL Sbjct: 59 CNGLDFIEKIREKDERIKIIILSGYSEFSYAQRAIKYGVYRYLTKPTNPRELLMAL---- 114 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 +++ + + + ++ + +R +I+ H + Sbjct: 115 -RELGFNTRK-----------NDGEAVGKNVFSENFEVGNYLVREAMNYIEVHYAEKIGL 162 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHY 214 +A+ ++IS YL L H+ Y Sbjct: 163 KSIADVLHISP----NYLSDLFRLHLKDNFSDY 191 >UniRef50_A5Z5R3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z5R3_9FIRM Length = 509 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 8/171 (4%) Query: 1 MI-NVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIY 58 MI N+LI+DD+A + + Y+ + + TA+ E A I ++ I+++L D+ Sbjct: 4 MIFNLLIVDDEAPIRKGLSEYIKWEDYDCKVVATANNGEDAITKI--NENDINIVLTDVK 61 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 M +G+ L +H R VI++S ++ + ++ Y V YL+KP + A+ Sbjct: 62 MPLLDGIGLAKYIHENRPDIAVIILSGYSEFEYARSAIQYHVSQYLLKPASKDQVIAAVK 121 Query: 119 GWRQKKMALEKHQYYDQAEL----DQLIHGSSSNEQDPRRLPKGLTPQTLR 165 +K + + + ++EL DQL + + K + L Sbjct: 122 EVCEKIVTSKSNTRIKESELAFLKDQLFQQLTDSNVIDEEKQKKIDSFNLD 172 >UniRef50_C5EPK7 Two-component response regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EPK7_9FIRM Length = 289 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 10/192 (5%) Query: 1 MINVLIIDDDAMVAELN-RRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +V+IIDD+ + E + + G + GTA E+I D D++++DI M Sbjct: 21 MYSVVIIDDNKIAVEAIAKSTDWEKCGCRVAGTAYDGIAGLELI--HDVAPDIVIIDIQM 78 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGLD++ + AR + I+IS + + ++ YGV DYL+KP E+AL Sbjct: 79 PGFNGLDVIKKIKGARKDTQFIIISGYSQFEYAQQAIRYGVCDYLLKPIMTEEMEQALMH 138 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 AL K + + + + R +G + + + ++D + + Sbjct: 139 VAD---ALRKKEA---ESVPAHMDSLEARLYAIRSGRQGYSSMVSQAI-SYVDRNINRNI 191 Query: 180 STDELANEVNIS 191 S ++ +E+ +S Sbjct: 192 SLSDVCDELLVS 203 >UniRef50_C7R6S4 Two component transcriptional regulator, LytTR family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6S4_KANKD Length = 234 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 13/178 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI+VLI+DD+ + RR + + G A ++A ++I + DLI LDI M Sbjct: 1 MISVLIVDDEQPARQRLRRLLDSHSDLEIVGEAENGQQALDLI--NSLQPDLIFLDISMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+ + L+ + +I ++ + DYL+KP + R +AL Sbjct: 59 VMNGMQVAKQLNQNDPQPHIIFTTAYD--EYALQAFDVDAQDYLLKPIRHERLSKALQKL 116 Query: 121 RQKK-------MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKG--LTPQTLRTLCQ 169 +++ +++ + + + +++++ S + L K L+ ++L+ L Q Sbjct: 117 QRQLTQTKTAYLSIRERETVRRVAVEEILFLHSDQKYTEVHLAKEVLLSSESLKDLEQ 174 >UniRef50_C0D8D1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D8D1_9CLOT Length = 387 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 8/174 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI+DD+ M+ + + + GF+ G ++A +++ T +D++L DI M Sbjct: 20 MYRVLIVDDEIMIRRGLSKIIKWEQIGFELAGAVGDAQEALKVL--EGTQVDVLLTDISM 77 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + GL+L+ + + + +VIS ++ +++ V +Y++KP + E Sbjct: 78 PEMTGLELIRLAKEHQPRIKTVVISGYSEFDYAIEAIKLKVENYILKPLDPKKITEIFEN 137 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDA 173 K AL++ Q +Q + + KG + L Q ++ Sbjct: 138 L---KNALDEEQKNEQKVM--YFQSEYEMLRGVDAESKGCQEEYQAQLIQMLEE 186 >UniRef50_A1ZD68 LytTr DNA-binding response regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZD68_9SPHI Length = 254 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI+DD+A+ + ++ + F+ G S +A +++ D+ DL+ LD+ M + Sbjct: 4 IKTLIVDDEALARDKLAIFLQEEEDFEIVGQCSNGIEALQLL--RDSYPDLLFLDVQMPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G++LL + + +I++++ + + Y +DYL+KPF RF + + Sbjct: 62 MDGMELLRNIDVQKIPC-IILVTAYDN--YALQAFEYHALDYLLKPFDRERFLMTIKRVK 118 Query: 122 QKKMALEKHQYYDQ 135 ++ + + + Q Sbjct: 119 EQMLLHSQGNHQTQ 132 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 5/143 (3%) Query: 1 MI--NVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDI 57 M+ VLI DD+A++ E R + + A E+A E+ +D++ +D+ Sbjct: 1 MMVWKVLIADDEAIIREGIRESIDWNEFNMEVVAEAEDGEEALELAL--RHRVDVLFVDL 58 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 M +GL L+ +IVI+ + + ++++ V DYL+KP R E + Sbjct: 59 SMPIMDGLTLMKYAREKLPNCHMIVITGYDEFSYAQEAIRLQVDDYLLKPTDPQRLREVV 118 Query: 118 TGWRQKKMALEKHQYYDQAELDQ 140 ++K +K + Y + +Q Sbjct: 119 AKVKEKLEQEQKEKQYRELLTNQ 141 >UniRef50_C6CZ23 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ23_PAESJ Length = 522 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 10/150 (6%) Query: 3 NVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +LI+DD+A++ + + Y+ + GFQ G AS ++A E+I ++ ++L D+ M Sbjct: 6 KLLIVDDEALIRQGIKHYMNWEQEGFQIVGEASNGKEALEMI--AELQPHIVLTDLVMPI 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP-FQASRFEEALTGW 120 +G +L + +VIV+SS D ++ + GV DY++KP L Sbjct: 64 MDGEELTRQIKLKYPDIEVIVLSSFGDFDYVRSTFQSGVRDYILKPKLDTGHMLNVLKAV 123 Query: 121 RQKKMALEK-HQYYDQ-----AELDQLIHG 144 K +L+ Q +Q + L++L+ G Sbjct: 124 ADKIPSLQGDEQSTNQGPTIDSVLEKLLSG 153 >UniRef50_C5RGL0 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGL0_CLOCL Length = 533 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 12/195 (6%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +V+I+DD+ ++ ++ V + GF+ E A + + ID I+ DI M Sbjct: 1 MYSVMIVDDEPIIRMGLKKTVKWEEHGFKVVCECRDGEDALKEL--EQQKIDFIVTDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +G++LL + + V+++S + + ++ L G DY++KP + E L Sbjct: 59 HKVSGIELLRTIRDMELDIPVLLLSGYDEFSYAQEGLRLGAFDYILKPLDREKLEIVLAN 118 Query: 120 WRQKKMALEKHQYY--------DQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWI 171 +K +K + + L L+ G + D L P + I Sbjct: 119 VYKKLAINDKKNHEFNINKTISREKVLYDLLRGKNLMVMDEYISQYDL-PLIKNKVQVAI 177 Query: 172 DAHQDYEFSTDELAN 186 + +++EL Sbjct: 178 VEINEIVINSEELIE 192 >UniRef50_C9ABT0 Predicted protein n=3 Tax=Enterococcus casseliflavus RepID=C9ABT0_ENTCA Length = 469 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 16/208 (7%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI+DD+A + + + G+Q G+A E +I + D+++ DI M Sbjct: 1 MRKVLIVDDEASIRNGLPLIIDWERLGYQIVGSAENGEAGLAMI--RELKPDVVIADIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +NGL+++ I++S +D K +L G V YL+KP LT Sbjct: 59 PGKNGLEMVQAASEEGLLFFAIILSGYSDFDYAKQALQLGAVTYLLKPVDEEELIGILTK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 QK ++ Q +++L G + +D + + L L + DA + E Sbjct: 119 IDQKAKTDQQKNQKSQL-MEKLFGGDQTGIKDAQAIK-------LLRLSEEADAQKLVEK 170 Query: 180 STDELANEVNISRVSCR--KYLIWLVNC 205 +++A V + R +YL+ L Sbjct: 171 LQEQVAQVVTLIH---RHHRYLVLLNEE 195 >UniRef50_C0B6P7 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B6P7_9FIRM Length = 295 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 66/137 (48%), Gaps = 4/137 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI V +++D+ ++ + + ++ G+ G AS E A +I + D+++ DI M Sbjct: 1 MIKVFLVEDEIIIRNGIKNSINWEMHGYDFVGEASDGELALPMIL--EKKPDILITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L + + ++++S + K ++ GV DYL+KP + + +A+ Sbjct: 59 PFMDGLELSEQVKKVLPATKIMILSGYNEFDYAKMAIKIGVTDYLLKPISSEKLLDAVNK 118 Query: 120 W-RQKKMALEKHQYYDQ 135 + + + + +Q Sbjct: 119 VAEEIRKEQSEKEQMNQ 135 >UniRef50_A5ZVI7 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A5ZVI7_9FIRM Length = 549 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 3/134 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ + + +D+ +V E +R + + GF+ G A+ E A ++ DL++ DI M Sbjct: 1 MLKIFLAEDEVVVRETIKRMIPWEELGFELVGEAADGEMALPLLIRQQ--PDLLITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L + V+++S D K ++ GV DYL+KP + E L+ Sbjct: 59 PFMDGLTLARLAKKEIPGLKVVILSGYDDFNYAKQAIGIGVEDYLLKPITKNALIERLSE 118 Query: 120 WRQKKMALEKHQYY 133 R + + + Y Sbjct: 119 IRSRYEHEKTQKEY 132 >UniRef50_Q5WBZ0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WBZ0_BACSK Length = 249 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 10/186 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQ-IPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V+I +D+ M+ + V Q + F G A E+A E++ + D++L DI M Sbjct: 12 MYKVVIAEDEKMIRKGLVTIVDQLVTDFTVIGEADNGERALELL--AHDCPDVLLTDIRM 69 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +GL L+ + ++++S + A + ++ +GV YL+KP + A Sbjct: 70 PKCDGLSLIREARSYYPHVKIVIVSGHEEFAYAQQAIQHGVSRYLLKPIDRTEVVLAFDE 129 Query: 120 WRQKKMALEKHQYYDQ--AELDQLIHGSSSNEQDPRRLPK--GLTPQTLRTLCQWIDAHQ 175 ++ + E+ + + ++D I + + + K L P QW Sbjct: 130 IKRGLVEPEQEDHENHLIQQVDSYIKTHIDQDITLQAVAKLVHLHPTYF---SQWFKNET 186 Query: 176 DYEFST 181 FST Sbjct: 187 GQNFST 192 >UniRef50_A3W3Q3 PAS:GGDEF protein n=1 Tax=Roseovarius sp. 217 RepID=A3W3Q3_9RHOB Length = 410 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +L +DDDA + EL ++ GF A++ E+A +++ SDTP D +LLDI M Sbjct: 92 MRILAVDDDAFILELI-PMISAKAGFSEVTPAASGEEALKLLTGSDTPFDCLLLDISMPG 150 Query: 62 ENGLDLLPVLHN--ARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NG++ + ++ ++++++ D A I D+ G +Y KPF L Sbjct: 151 MNGIEFCRRVRQIPRYRQTPIVMLTAMRDVANIGDAYRAGATEYATKPFDIEELGMRLRR 210 Query: 120 WRQKKMALEKHQYYDQA 136 ++ A Q Sbjct: 211 AQETVHAQRGTGPARQE 227 >UniRef50_Q73CG3 DNA-binding response regulator, LuxR family n=10 Tax=Firmicutes RepID=Q73CG3_BACC1 Length = 214 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 86/198 (43%), Gaps = 13/198 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 NVLI+DD +V E + + FQ G A+ E+A I D+IL+D+ M K Sbjct: 3 YNVLIVDDHFVVREGLKLIIETSDSFQIIGEATNGEEALSFI--EKKKPDVILMDLNMPK 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+ + VL+ + + +I++++ + + + G YL+K L Sbjct: 61 MSGLETIEVLNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAI 120 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + ++ L+ + ++++++ LT + L L +++ Sbjct: 121 RGEILLQPNI------MEKIVNYKRKEIHANVVEENNLTEKELFVLKAIARGNKNK---- 170 Query: 182 DELANEVNISRVSCRKYL 199 ++A ++ I+ + + YL Sbjct: 171 -DIAFDMGIAERTVKAYL 187 >UniRef50_C4G522 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G522_ABIDE Length = 513 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI +LI+DD+ ++ E + G G A +A II D D++L DI M Sbjct: 1 MIKLLIVDDERIIRETISTLIDWDSLGIHLIGLAQNGFEAYNIIL--DESPDIVLTDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 GL+L+ ++ K+ I++S + K ++ YGV YL+KP + ++ Sbjct: 59 PGLTGLELIQKIYEINKKTQFIILSGYGEFEYAKTAMEYGVRHYLLKPCNEEQIIRSINE 118 Query: 120 WRQKKMALEKHQYYDQAE 137 K + ++ + Sbjct: 119 ILAKISKQTAFEKIEEEK 136 >UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=Clostridiales RepID=C5EPF6_9FIRM Length = 550 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 3/134 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI V +++D+ ++ + + + G G AS E A +I D+++ DI M Sbjct: 9 MIKVFLVEDEVVMRNGIKNNIPWEKEGLMFAGEASDGELAYPMI--KKAQPDILITDIRM 66 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L ++ K +I++S + K ++H GV DYL+KP AS+ EA+ Sbjct: 67 PFMDGLELSELVKKEFPKIKIIILSGYNEFDYAKQAIHIGVTDYLLKPITASKLLEAVKK 126 Query: 120 WRQKKMALEKHQYY 133 + + Sbjct: 127 VADVIEKEREEEGM 140 >UniRef50_Q2BFH4 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BFH4_9BACI Length = 515 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 3/142 (2%) Query: 3 NVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +LI+DD+ M+ + + + G A E+A + +D+++ DI M Sbjct: 8 KMLIVDDEPMICRGLAYTIPWEEHQIEVAGLAHDGEEAMNKV-KELNGVDIVITDIRMPN 66 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW- 120 ++GLDL L ++ +I+IS + + ++ GV DYL+KP E Sbjct: 67 KDGLDLAAFLKERYPQTRIIMISGYDEFKYAQKAIQLGVEDYLLKPVNIDELLEVAQKIT 126 Query: 121 RQKKMALEKHQYYDQAELDQLI 142 ++ + + ++Q L LI Sbjct: 127 KEIHQRQAERRQHEQIRLRNLI 148 >UniRef50_A4VXN7 Response regulator n=7 Tax=Streptococcus suis RepID=A4VXN7_STRSY Length = 440 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIP-GFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +L++DD+ M+ E + + + TA E+A + + S +DL+L D+ M Sbjct: 12 MHKMLVVDDEYMILEGMKHLLPYHEYNVEIVYTAENAEEALD--YFSQHTVDLVLTDVSM 69 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 GL+++ + + +I++S + + ++ G +DYL+KP + L Sbjct: 70 PDMTGLEMVRRMKEQSPDTHIIIMSGFQEFEYARKAISLGAMDYLLKPINKQELAKLLQQ 129 Query: 120 WRQKKMALEKH 130 K ++ Sbjct: 130 LPTLKKETDRE 140 >UniRef50_A4XJ73 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XJ73_CALS8 Length = 517 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ ++IDD+ ++ E ++ + + GF+ TA + E I ++ L+DI + Sbjct: 1 MLKAILIDDEPIILEGLQKIIDWKALGFEIIATAQDGIEGLEKI--KKFKPEVALVDIRI 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L+ L + VI++S ++ K+++ GV YL+KP E+ L Sbjct: 59 PGIDGLLLIKKLKEEGVNTKVIILSGYSEFEYAKEAIELGVESYLLKPVDPHMLEQKLEK 118 Query: 120 WRQK---KMALEKHQYYDQA 136 +QK ++ L+K Q Sbjct: 119 VKQKISQEIELQKVVRTTQE 138 >UniRef50_B0G4U8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0G4U8_9FIRM Length = 540 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V + +D+ ++ E R + + G++ G A+ E A +I T D+++ DI M Sbjct: 1 MLKVFLAEDETLIREGLRDNIPWEQYGYRFVGEAADGEMALPLI--RKTKPDVLITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L ++ ++ +I+IS D ++++ GV YL+KP + L Sbjct: 59 PFMDGLSLSRIVREELPRTKIIIISGYDDFEYAREAISIGVDQYLLKPVTRMNLRKVLQE 118 Query: 120 WRQKKMALEKHQYYD 134 ++K + + Y Sbjct: 119 LKEKIEQDAEQEDYQ 133 >UniRef50_A0L4H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Proteobacteria RepID=A0L4H3_MAGSM Length = 470 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 19/206 (9%) Query: 1 MIN------VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLIL 54 M+ +L+++D +A + + Y+ P +Q A +++ DL+L Sbjct: 1 MMKARDLHSLLLVEDSPSMAMVYQEYIKGEPQWQV-SHCKEGHAA--LVYLHQHTPDLVL 57 Query: 55 LDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFE 114 LD+ + +GL++L +H + + V++I++ T ++ G DYL KPF A+R Sbjct: 58 LDLQLPDMHGLEILKAIHEQQLPTQVVIITAHGSVDTAVEATRLGAFDYLEKPFSANRLL 117 Query: 115 EAL-TGWRQKKMALEKHQYYDQAELDQL--IHGSSSNEQDPRRLPKGLTPQTLRTLCQWI 171 + RQK ++LE Y D + D G+S Q + + P + Sbjct: 118 VTMGNALRQKNLSLEVQAYRDSFDRDHYHGFIGASPTMQALYQTIESAAPSSATIFI--- 174 Query: 172 DAHQDYEFSTDELANEVNISRVSCRK 197 + E+ E I + S R+ Sbjct: 175 ---TGESGTGKEVCAEA-IHKASTRR 196 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax... 284 2e-75 UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkalip... 247 3e-64 UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4I... 246 4e-64 UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S... 245 8e-64 UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8F... 243 3e-63 UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=... 243 4e-63 UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A... 243 4e-63 UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=... 241 1e-62 UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Py... 239 4e-62 UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Breviba... 239 4e-62 UniRef50_A4FKM5 Two-component system response regulator n=31 Tax... 238 1e-61 UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B... 237 2e-61 UniRef50_P39486 Probable C4-dicarboxylate response regulator dct... 237 3e-61 UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacilla... 235 1e-60 UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dct... 233 4e-60 UniRef50_C1SJK3 Response regulator of citrate/malate metabolism ... 233 6e-60 UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacilla... 232 7e-60 UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacill... 232 8e-60 UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamur... 232 8e-60 UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillu... 231 2e-59 UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae R... 230 3e-59 UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermos... 228 1e-58 UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcu... 228 1e-58 UniRef50_C7MRE3 Response regulator of citrate/malate metabolism ... 227 2e-58 UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinom... 227 2e-58 UniRef50_B7VN90 Response regulator of citrate/malate metabolism ... 227 3e-58 UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus grou... 227 3e-58 UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=... 226 4e-58 UniRef50_C1SFW1 Response regulator of citrate/malate metabolism ... 225 8e-58 UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillu... 225 9e-58 UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=... 225 1e-57 UniRef50_A4SN90 Two-component system citrate/malate response reg... 225 1e-57 UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=... 225 1e-57 UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscol... 224 2e-57 UniRef50_UPI00019732B8 two-component response regulator yufM n=1... 223 3e-57 UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AH... 223 4e-57 UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium ... 223 5e-57 UniRef50_A3JET4 Response regulator of citrate/malate metabolism ... 223 5e-57 UniRef50_C1TQF1 Response regulator of citrate/malate metabolism ... 221 1e-56 UniRef50_C1I809 Two-component system response regulator n=1 Tax=... 221 2e-56 UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillu... 220 4e-56 UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=... 218 2e-55 UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfi... 218 2e-55 UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammapro... 217 2e-55 UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinom... 217 3e-55 UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX... 216 5e-55 UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacil... 215 9e-55 UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carb... 215 9e-55 UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella R... 214 1e-54 UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamur... 213 3e-54 UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism ... 212 5e-54 UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=... 212 6e-54 UniRef50_C1TQ18 Response regulator of citrate/malate metabolism ... 212 6e-54 UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinoco... 211 1e-53 UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbel... 210 3e-53 UniRef50_C3JVF9 Response regulator receiver domain protein n=12 ... 210 3e-53 UniRef50_B1W256 Putative two-component system response regulator... 210 3e-53 UniRef50_UPI0001C42291 response regulator receiver/unknown domai... 210 3e-53 UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax... 207 2e-52 UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinoco... 207 2e-52 UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=... 206 4e-52 UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax... 206 4e-52 UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringe... 206 5e-52 UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermos... 206 6e-52 UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=... 205 8e-52 UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillu... 205 9e-52 UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=... 205 9e-52 UniRef50_A6W5B7 Two component transcriptional regulator, Fis fam... 204 2e-51 UniRef50_B8K774 Response regulator of citrate/malate metabolism ... 203 4e-51 UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax... 203 5e-51 UniRef50_Q03TV3 Response regulator of citrate/malate metabolism ... 202 8e-51 UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Co... 201 1e-50 UniRef50_A4FB60 Two-component system response regulator n=4 Tax=... 201 1e-50 UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus ... 201 2e-50 UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacilla... 201 2e-50 UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanob... 200 3e-50 UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya... 200 3e-50 UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=... 200 3e-50 UniRef50_C5CAK7 Response regulator of citrate/malate metabolism ... 200 4e-50 UniRef50_C2IT51 Response regulator of citrate/malate metabolism ... 199 5e-50 UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococ... 199 8e-50 UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geoderm... 198 1e-49 UniRef50_C4X351 Two-component response regulator for citrate n=2... 198 1e-49 UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=... 197 3e-49 UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=... 196 4e-49 UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillu... 196 4e-49 UniRef50_C9Z825 Putative two component system response regulator... 196 5e-49 UniRef50_Q0RQX5 C4-dicarboxylate two-component system response r... 194 2e-48 UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clost... 194 2e-48 UniRef50_Q8NU70 Two-component system, response regulators consis... 193 4e-48 UniRef50_UPI000050FA19 putative two-component response regulator... 192 9e-48 UniRef50_C8NS01 Two component system response regulator n=6 Tax=... 190 3e-47 UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillu... 190 3e-47 UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammapr... 190 4e-47 UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=... 190 4e-47 UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinoc... 188 1e-46 UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacilla... 187 2e-46 UniRef50_UPI00017896CE two component transcriptional regulator, ... 187 2e-46 UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteob... 187 3e-46 UniRef50_UPI0001C358FB two component transcriptional regulator, ... 186 7e-46 UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Therman... 186 7e-46 UniRef50_UPI0001788B4F two component transcriptional regulator, ... 185 1e-45 UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=... 182 6e-45 UniRef50_UPI0001C32222 response regulator receiver and unknown d... 182 7e-45 UniRef50_A3CKH3 Two-component system transcriptional regulator (... 182 1e-44 UniRef50_C6IWZ0 Two component transcriptional regulator n=1 Tax=... 180 3e-44 UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacteriu... 180 5e-44 UniRef50_UPI0001C351CB two component AraC family transcriptional... 179 7e-44 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 179 7e-44 UniRef50_A6TMD1 Response regulator receiver protein n=1 Tax=Alka... 179 7e-44 UniRef50_B2GLU0 Putative CriR family two-component response regu... 179 9e-44 UniRef50_UPI00016C0713 response regulator receiver protein n=1 T... 179 1e-43 UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepI... 179 1e-43 UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodo... 178 1e-43 UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerot... 178 1e-43 UniRef50_B1W048 Putative two-component system response regulator... 178 2e-43 UniRef50_UPI0001BC2D80 two-component system response regulator n... 178 2e-43 UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus D... 177 3e-43 UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bro... 177 3e-43 UniRef50_A9KL59 Two component transcriptional regulator, AraC fa... 177 3e-43 UniRef50_A8RM75 Putative uncharacterized protein n=2 Tax=Clostri... 177 4e-43 UniRef50_UPI00016C0A10 response regulator receiver protein n=1 T... 176 7e-43 UniRef50_C8NE16 DNA-binding response regulator n=1 Tax=Granulica... 176 9e-43 UniRef50_UPI0001C36ADD two component AraC family transcriptional... 175 1e-42 UniRef50_C2ASC2 Response regulator of citrate/malate metabolism ... 175 1e-42 UniRef50_C7IBY4 Two component transcriptional regulator, AraC fa... 175 1e-42 UniRef50_A8RNS9 Putative uncharacterized protein n=1 Tax=Clostri... 174 2e-42 UniRef50_A4XHB8 Two component transcriptional regulator, AraC fa... 174 2e-42 UniRef50_UPI0001789139 two component transcriptional regulator, ... 174 2e-42 UniRef50_C6D416 Two component transcriptional regulator, AraC fa... 174 2e-42 UniRef50_B8FWU4 Two component transcriptional regulator, AraC fa... 174 2e-42 UniRef50_A6M388 Response regulator receiver protein n=3 Tax=Clos... 174 2e-42 UniRef50_A8RI10 Putative uncharacterized protein n=1 Tax=Clostri... 174 3e-42 UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Therman... 174 3e-42 UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bro... 173 4e-42 UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=... 173 4e-42 UniRef50_C3WDI9 Two component transcriptional regulator n=2 Tax=... 173 5e-42 UniRef50_C6IZP2 Response regulator n=1 Tax=Paenibacillus sp. ora... 172 6e-42 UniRef50_Q5WBZ0 Two-component response regulator n=1 Tax=Bacillu... 172 6e-42 UniRef50_C6D7X2 Two component transcriptional regulator, AraC fa... 172 8e-42 UniRef50_A8MKS9 Two component transcriptional regulator, AraC fa... 172 9e-42 UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=... 172 9e-42 UniRef50_A5N731 Transcriptional regulator n=4 Tax=Clostridium Re... 172 1e-41 UniRef50_UPI00017880F1 two component transcriptional regulator, ... 171 1e-41 UniRef50_C2KZS5 Response regulator n=1 Tax=Oribacterium sinus F0... 171 1e-41 UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bactero... 171 2e-41 UniRef50_Q5WIY3 Two-component response regulator n=1 Tax=Bacillu... 171 2e-41 UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. ora... 171 3e-41 UniRef50_UPI0001C36B1C two component transcriptional regulator, ... 171 3e-41 UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=... 171 3e-41 UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V... 171 3e-41 UniRef50_C1I3A1 Response regulator receiver protein n=1 Tax=Clos... 170 3e-41 UniRef50_UPI000050F8A6 two component transcriptional regulator, ... 170 3e-41 UniRef50_Q893H5 Transcriptional regulatory protein n=1 Tax=Clost... 170 4e-41 UniRef50_UPI0001789951 two component transcriptional regulator, ... 170 4e-41 UniRef50_C6D7A9 Two component transcriptional regulator, AraC fa... 170 4e-41 UniRef50_A8RWS2 Putative uncharacterized protein n=1 Tax=Clostri... 170 4e-41 UniRef50_C6J5Q8 Two component transcriptional regulator n=1 Tax=... 170 5e-41 UniRef50_C5EPK7 Two-component response regulator n=1 Tax=Clostri... 169 5e-41 UniRef50_A6TVR4 Two component transcriptional regulator, LuxR fa... 169 5e-41 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 169 6e-41 UniRef50_C0D4G6 Putative uncharacterized protein n=2 Tax=Clostri... 169 6e-41 UniRef50_A9QDR4 Two component transcriptional regulator, AraC fa... 169 6e-41 UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR fa... 169 8e-41 UniRef50_Q5WBT1 Two-component response regulator n=1 Tax=Bacillu... 169 8e-41 UniRef50_UPI0001788C36 two component transcriptional regulator, ... 169 9e-41 UniRef50_C6IWB5 Predicted protein n=1 Tax=Paenibacillus sp. oral... 169 1e-40 UniRef50_A9WA66 Response regulator receiver n=2 Tax=Chloroflexus... 169 1e-40 UniRef50_A9KJ95 Two component transcriptional regulator, AraC fa... 168 1e-40 UniRef50_B8I425 Two component transcriptional regulator, AraC fa... 168 1e-40 UniRef50_C7GGB1 Putative two-component response regulator n=1 Ta... 168 1e-40 UniRef50_D2LTH2 Two component transcriptional regulator, AraC fa... 168 1e-40 UniRef50_C5EE52 Two-component response regulator n=1 Tax=Clostri... 168 2e-40 UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR fa... 168 2e-40 UniRef50_C7GHF1 Putative two-component response regulator n=1 Ta... 167 2e-40 UniRef50_C0D789 Putative uncharacterized protein n=1 Tax=Clostri... 167 2e-40 UniRef50_C6D2L5 Two component transcriptional regulator, AraC fa... 167 2e-40 UniRef50_C6LL33 Two-component response regulator n=1 Tax=Bryante... 167 2e-40 UniRef50_C7II19 Two component transcriptional regulator, AraC fa... 167 2e-40 UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecali... 167 2e-40 UniRef50_C3PHX2 Two-component system response regulator n=3 Tax=... 167 3e-40 UniRef50_D2LWA9 Two component transcriptional regulator, AraC fa... 167 3e-40 UniRef50_A7VPJ2 Putative uncharacterized protein n=1 Tax=Clostri... 167 4e-40 UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=... 167 4e-40 UniRef50_B2J2N1 Two component transcriptional regulator, LuxR fa... 166 4e-40 UniRef50_C6J1B9 Two component transcriptional regulator n=1 Tax=... 166 4e-40 UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR fa... 166 4e-40 UniRef50_C6CWR9 Two component transcriptional regulator, AraC fa... 166 5e-40 UniRef50_D1PQY0 DNA-binding response regulator, AraC family n=1 ... 166 5e-40 UniRef50_C6CTF9 Two component transcriptional regulator, AraC fa... 166 7e-40 UniRef50_A9U6E4 Predicted protein (Fragment) n=1 Tax=Physcomitre... 166 7e-40 UniRef50_A6TTZ3 Response regulator receiver protein n=1 Tax=Alka... 166 7e-40 UniRef50_UPI00017899D9 two component transcriptional regulator, ... 166 8e-40 UniRef50_C6J482 Two component transcriptional regulator n=1 Tax=... 166 8e-40 UniRef50_C0ZBD9 Two-component response regulator n=2 Tax=Paeniba... 166 9e-40 UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminoc... 166 9e-40 UniRef50_A7VVZ1 Putative uncharacterized protein n=1 Tax=Clostri... 166 9e-40 UniRef50_B5YAV6 Two-component response regulator n=2 Tax=Dictyog... 165 1e-39 UniRef50_A8RPD4 Putative uncharacterized protein n=1 Tax=Clostri... 165 1e-39 UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=... 165 1e-39 UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminoc... 165 1e-39 UniRef50_C1A9U5 NarL family two-component response regulator n=1... 165 1e-39 UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 ... 165 1e-39 UniRef50_A6TTD1 Response regulator receiver protein n=3 Tax=Firm... 165 1e-39 UniRef50_B0G4U8 Putative uncharacterized protein n=2 Tax=Clostri... 165 1e-39 UniRef50_C0B6P7 Putative uncharacterized protein n=1 Tax=Coproco... 165 1e-39 UniRef50_UPI0001C364DA two component transcriptional regulator, ... 165 1e-39 UniRef50_C5ENT8 Two component transcriptional regulator n=2 Tax=... 165 1e-39 UniRef50_D1XHI5 Two component transcriptional regulator, LuxR fa... 165 2e-39 UniRef50_A7VQW7 Putative uncharacterized protein n=1 Tax=Clostri... 165 2e-39 UniRef50_UPI0001C363ED two component AraC family transcriptional... 164 2e-39 UniRef50_C6D165 Two component transcriptional regulator, AraC fa... 164 2e-39 UniRef50_A6LST7 Response regulator receiver protein n=4 Tax=Clos... 164 2e-39 UniRef50_C0GF31 Two component transcriptional regulator, LuxR fa... 164 2e-39 UniRef50_UPI0001C368CA hypothetical protein ChatD1_01271 n=1 Tax... 164 2e-39 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 164 2e-39 UniRef50_Q2BFH4 Putative uncharacterized protein n=1 Tax=Bacillu... 164 2e-39 UniRef50_C6JCU5 Two component transcriptional regulator n=2 Tax=... 164 2e-39 UniRef50_C0CWR9 Putative uncharacterized protein n=1 Tax=Clostri... 164 2e-39 UniRef50_C6BTX3 Two component transcriptional regulator, LuxR fa... 164 3e-39 UniRef50_C6D6B5 Two component transcriptional regulator, AraC fa... 164 3e-39 UniRef50_B0NES4 Putative uncharacterized protein n=2 Tax=Clostri... 164 3e-39 UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=... 164 3e-39 UniRef50_A8RLJ5 Putative uncharacterized protein n=1 Tax=Clostri... 164 3e-39 UniRef50_Q0SR92 DNA-binding response regulator, AraC family n=10... 164 3e-39 UniRef50_A9KRS1 Two component transcriptional regulator, AraC fa... 164 3e-39 UniRef50_Q9KB26 BH2109 protein n=1 Tax=Bacillus halodurans RepID... 164 3e-39 UniRef50_A5ZA57 Putative uncharacterized protein n=1 Tax=Eubacte... 164 3e-39 UniRef50_UPI0001C35A14 two component transcriptional regulator, ... 163 3e-39 UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillu... 163 4e-39 UniRef50_C6IYJ7 Predicted protein n=1 Tax=Paenibacillus sp. oral... 163 4e-39 UniRef50_D1PQV2 Putative two-component response regulator n=1 Ta... 163 6e-39 UniRef50_B0NX83 Putative uncharacterized protein n=1 Tax=Clostri... 163 6e-39 UniRef50_Q73CG3 DNA-binding response regulator, LuxR family n=10... 163 6e-39 UniRef50_C0C0Y1 Putative uncharacterized protein n=1 Tax=Clostri... 162 7e-39 UniRef50_C6D3P9 Two component transcriptional regulator, AraC fa... 162 8e-39 UniRef50_C6D352 Two component transcriptional regulator, AraC fa... 162 8e-39 UniRef50_C0Z7M8 Two-component hybrid sensor and regulator n=11 T... 162 8e-39 UniRef50_C6CXC7 Two component transcriptional regulator, AraC fa... 162 9e-39 UniRef50_C9ABT0 Predicted protein n=3 Tax=Enterococcus casselifl... 162 9e-39 UniRef50_B5JTE5 Two-component system regulatory protein n=1 Tax=... 162 1e-38 UniRef50_D2Q2Q8 Two component transcriptional regulator, LuxR fa... 162 1e-38 UniRef50_A5Z5R3 Putative uncharacterized protein n=1 Tax=Eubacte... 162 1e-38 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 162 1e-38 Sequences not found previously or not previously below threshold: UniRef50_C0CWH5 Putative uncharacterized protein n=1 Tax=Clostri... 166 6e-40 UniRef50_D1VBH1 Two component transcriptional regulator, LuxR fa... 164 2e-39 UniRef50_A3DFT1 Two component transcriptional regulator, AraC fa... 164 3e-39 UniRef50_C8WSR5 Two component transcriptional regulator, LuxR fa... 163 5e-39 UniRef50_B0C756 Two-component transcriptional regulator, LuxR fa... 162 6e-39 UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplas... 162 1e-38 >UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax=Gammaproteobacteria RepID=DCUR_ECOL6 Length = 239 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 238/239 (99%), Positives = 238/239 (99%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ Sbjct: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 KENGLDLLPVLHNARCKSDVIVISSAADA TIKDSLHYGVVDYLIKPFQASRFEEALTGW Sbjct: 61 KENGLDLLPVLHNARCKSDVIVISSAADAVTIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS Sbjct: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ Sbjct: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 >UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TMU0_ALKMQ Length = 235 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 141/231 (61%), Gaps = 4/231 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI+VLI++DD MVA+LN+ YV + GF+ G A+ EKA + I + +DLI+LDI+M Sbjct: 1 MISVLIVEDDQMVAKLNKHYVESVQGFEVVGVANDGEKAWKFI--NHNNVDLIILDIHMA 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 K +GL L + ++DVI +++A ++ TI + L G VDYLIKPF+ R + AL + Sbjct: 59 KVDGLAFLKEMRKKLIQADVIFVTAAQESETIDEGLKLGAVDYLIKPFEYERMKSALENY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 ++ L K Q ++D++ + ++ Q P LPKGL +TL+ + +++ H+D + Sbjct: 119 ERRYHLLRKEHVIKQEDIDKITTKNPTHNQRP--LPKGLHEKTLKKVRRYMQDHKDELLT 176 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHY 231 +DE+A E+ SRV+ R+YL +LV+ L I YG GRP +Y+++ Sbjct: 177 SDEVAAELEFSRVTVRRYLEYLVSIGELTLEIEYGSIGRPSNKYKMRLNSE 227 >UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4IPE5_GEOTN Length = 228 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 130/229 (56%), Gaps = 8/229 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLII+DD +AE+NRR+V ++ G++ G A+ E+A+E+ D++LLD+Y Sbjct: 1 MIRVLIIEDDHRIAEINRRFVEKVEGYEVVGIATNAEEAREL--TEVLRPDVLLLDVYFP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+ L + D+I+I++A + T+K +LH GV DY+IKP +RF E L + Sbjct: 59 DMNGISFLKWVRQRFSNIDIIMITAAREIDTLKQALHGGVFDYIIKPIMFNRFAETLNRY 118 Query: 121 RQKKMALE----KHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + ++ + ++ Q ++D+LI S ++ P LPKG+ P TL + + +D Sbjct: 119 KDYHDKMQQWMKEKEWIGQEDVDELIGRELSAKEQPS-LPKGIQPLTLEKVLVVVKQCRD 177 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + +E+ ++ +SR + R+YL +LV+ + I YG GRP YR Sbjct: 178 -GVTAEEVGQQIGMSRTTARRYLEYLVSTGQVLADIAYGSVGRPERIYR 225 >UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S242_RHOSR Length = 224 Score = 245 bits (627), Expect = 8e-64, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M VL++DDD MVAE++RR+V + PGF G A T A E + + DL+LLD+Y+ Sbjct: 1 MYEVLVVDDDFMVAEIHRRFVDKTPGFTTVGVARTAADALESVRTAH--PDLVLLDVYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GLD+L L VI+I++A + T+ +LH G DYL+KPF ++ +E L + Sbjct: 59 DMSGLDVLQRLRAEGNAVGVIMITAAREIDTVSRALHGGASDYLVKPFDYTQLQEKLENF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R++ ALE DQ+ +D L G N +P RLPKGL+ +T R + + + E S Sbjct: 119 RRRARALESQSGADQSLIDSLFGGKGKNP-EPSRLPKGLSAETGRLVLDILRSKG--ELS 175 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + E A +SRVS R+YL ++ +L + YG GRPV RYR Sbjct: 176 STECAELAGLSRVSVRRYLEHYLSEGLLEVRLEYGGAGRPVRRYR 220 >UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8FGV9_BACP2 Length = 235 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 92/238 (38%), Positives = 144/238 (60%), Gaps = 3/238 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLI++DD MV ELN+RY+ QI GF+ G A++ ++A +++ I L+LLDIYM Sbjct: 1 MINVLIVEDDPMVGELNKRYLTQIEGFELKGIATSFQQALDMLKTE--AIHLVLLDIYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +NGL LL + DVIVIS+A + ++ ++ G VDYLIKPF+ RF+ AL+ + Sbjct: 59 GQNGLALLSEIRKQNHSVDVIVISAANEVDVVQQTMRNGAVDYLIKPFEFERFQSALSEY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 ++K + Q +LD + + + LPKGLT TL+ + I + F+ Sbjct: 119 KRKHALYQTMNSISQNDLDAKLFHKKAETEKV-LLPKGLTKSTLKLIWTSIQSFGHQAFT 177 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 T++LAN IS+VS RKYL +L + ++ + YG GRPV++Y++ + +L++QY Sbjct: 178 TEDLANHTEISQVSIRKYLKFLEDIEVVDVEMAYGTIGRPVFQYKLSTTNMNLIQQYL 235 >UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=Firmicutes RepID=MALR_BACSU Length = 235 Score = 243 bits (621), Expect = 4e-63, Method: Composition-based stats. Identities = 105/238 (44%), Positives = 149/238 (62%), Gaps = 3/238 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLI++DD MV ELN+RY++QI GFQ G AS+ + A I+ + IDLILLDIYM Sbjct: 1 MINVLIVEDDPMVGELNKRYLSQIDGFQLKGIASSFQSALHILG--EHHIDLILLDIYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +NGL+LL L DVIVIS+A++ IK +L YG VDYLIKPF+ RF+ AL+ + Sbjct: 59 GKNGLELLTELRAQNEAVDVIVISAASELDVIKKTLRYGAVDYLIKPFEFERFQTALSDY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R+K+ H+ Q ELD + + +LPKGLT TL+ + I + ++ F+ Sbjct: 119 RRKQKVYSTHRNMSQKELDAELF-QKKEATEKVQLPKGLTKSTLKLIWSSIQSFENESFT 177 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 T++LA IS+VS RKYL +L + +L + YG GRPV++Y + + + +KQY Sbjct: 178 TEDLAKHTEISQVSIRKYLKFLEDIQVLNVEMAYGTIGRPVFQYNVNNSNINGIKQYL 235 >UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A5D2L3_PELTS Length = 225 Score = 243 bits (621), Expect = 4e-63, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD MV E+NR ++ +PGF+ G A + +A E+I + DL+LLDIY+ Sbjct: 4 IGVLIVEDDPMVVEVNRGFINAVPGFKVVGVARSGREAIEMI--KELSPDLVLLDIYLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL L + +DVI++++A DA TI+ YG +DY+IKPF+ +R + AL + Sbjct: 62 VDGLTTLQEIRRIGLPTDVIIVTAAQDAETIQRGFRYGSIDYIIKPFKFTRLKAALNSYA 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + +QAE+D L G +Q +PKGL TL+ + ++ + S Sbjct: 122 TLYNRFRRQAQMNQAEIDSLTLG--RGQQVDEGVPKGLNEVTLKQVFLYLL-KEGVALSA 178 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +E+A V ++RV+ R+YL ++ + + YG GRPV RYRI+ Sbjct: 179 EEVAEGVGLARVTARRYLDYMEKSGKVVLELQYGSVGRPVNRYRIK 224 >UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42273 Length = 237 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 5/229 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFN-SDTPIDLILLDIYM 59 M NVLI++DD VAE+ + +V ++ GF G T + + +FN ++T DLILLD+Y+ Sbjct: 5 MYNVLIVEDDFRVAEITKGFVEKVDGFNVIGLCKTGAETESFLFNLNETTPDLILLDVYI 64 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGLDL + + D+++I++A + TI+++L G+ DY++KP +RF+ L Sbjct: 65 PDVNGLDLFWKIRENLHQVDIVMITAAKEVYTIEEALRGGIFDYIVKPVDFNRFKRTLDT 124 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQ----DPRRLPKGLTPQTLRTLCQWIDAHQ 175 ++ ++ +L + +Q E+D L S ++ + +LPKG+ TL + + H Sbjct: 125 FKDQRGSLSSKEKLNQEEIDLLTRAQSPSQSAALVEQEQLPKGIDSITLDKVKNILSLHS 184 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 D + L V ISR + R+YL +LV+ + YG GRP Y Sbjct: 185 DTGITASSLGEAVGISRSTARRYLEYLVSISEARAELSYGDVGRPERLY 233 >UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1R1_9BACT Length = 248 Score = 239 bits (612), Expect = 4e-62, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 129/231 (55%), Gaps = 3/231 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI +I++DD MVA++NRRY+ Q + A I + + DLI+LD+YM Sbjct: 1 MIKTIIVEDDPMVAQINRRYLDTANDIQVAAVFDNGKDALAYIEDEE--PDLIILDVYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NGL+LL + A +SDVI++++A D ++++L G+VDYL+KPF+ RF EA+ + Sbjct: 59 VMNGLELLREIRKADIQSDVIMVTAANDVKNVEEALRLGIVDYLVKPFEYERFMEAIEKY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDP-RRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R+K L+ +Q +D L+ + Q P R L KGL +TL + +D + Sbjct: 119 RKKAHVLKDASTLNQDAIDALVSVGAPQPQAPARDLKKGLQQRTLDMIRSHLDKMKGETC 178 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEH 230 + D LA V +S+V+ R+YL +L + +S+ Y GRP +Y I+ + Sbjct: 179 TCDTLAGVVGLSKVTVRRYLNYLAEIGEIDSSVDYETGGRPCIKYFIRPDS 229 >UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7C4_BREBN Length = 239 Score = 239 bits (612), Expect = 4e-62, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 8/234 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I V+I++DD + A + ++ +++ GFQ TA+T ++A E++ D++LLDIY+ Sbjct: 6 ITVMIVEDDEIAARIYEQFTSKLEGFQIIATATTGKQALEMLHV--VTPDVLLLDIYLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG+DLL + DV++I++A D T+++++ G Y+IKP +F L + Sbjct: 64 MNGIDLLREVRKHFRGIDVVMITAANDVETVREAIRGGAYSYIIKPIMIDKFMSTLEQYA 123 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQ-----DPRRLPKGLTPQTLRTLCQWIDAHQD 176 + L++H DQ +D+L ++ LPKG+ TL+ + + Sbjct: 124 NTRHQLQQHTTIDQTAVDKLFTKAAHTPATKTVGTVTSLPKGIDKLTLKLIRDKMQETT- 182 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEH 230 + D+LA +S + R+YL +LV+ + + YG GRP +YR + Sbjct: 183 QSMNADDLAALAGMSHSTVRRYLEFLVSINEVTVETFYGTVGRPERKYRWVPQK 236 >UniRef50_A4FKM5 Two-component system response regulator n=31 Tax=Actinobacteria (class) RepID=A4FKM5_SACEN Length = 231 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 14/235 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL++DDD MVA+++ YV+++ GF+ GTA T A + + +L+LLDIY+ Sbjct: 1 MIKVLVVDDDFMVAKIHSGYVSRVTGFEVVGTAHTGADALRAVG--ELRPELVLLDIYLP 58 Query: 61 KENGLDLLPVLHN----ARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 +GL +L L DVIVI++A D T++ ++ G + YLIKPF + Sbjct: 59 DMDGLAVLRELRAGTARPSADPDVIVITAARDLDTVRGAIRGGALHYLIKPFSYEALRDQ 118 Query: 117 LTGWRQKKMALEK---HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDA 173 L +R +L Q ++D+L + P PKG++ +T R + + Sbjct: 119 LENFRSLHRSLSAMPGDAPAAQQDVDRLFGSRARGSSAP---PKGVSSETARIVEDILRE 175 Query: 174 HQDYE--FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 S E A+ +SRVS RKYL V + YG TGRP RYR Sbjct: 176 RSAEGGDLSATECADATALSRVSARKYLEHFVMTGRAEVRLRYGGTGRPERRYRW 230 >UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B3M8_9BACI Length = 235 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 98/238 (41%), Positives = 141/238 (59%), Gaps = 3/238 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINV+I++DD MVAE+N+RY+A++ GF+ +A ++++A ++ I LILLDIYM Sbjct: 1 MINVMIVEDDPMVAEINKRYLAKVEGFRLAASARSVDEAVSLL--EKEDIQLILLDIYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 GL+L+ L ++DVI+IS+A D I+ +L GVVDYLIKPF+ RF ALT + Sbjct: 59 GRLGLELVTYLRKNELETDVIIISAAKDMDRIRQALRSGVVDYLIKPFEFERFNAALTAY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q+ EK + Q ELD + LPKGLT TL+ + + + ++ FS Sbjct: 119 EQQSRFAEKREEVTQQELDSHLLR-REEPSVVEELPKGLTKDTLKQVWEAVQELKEGPFS 177 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 TDE+A V +SRVS RKYL +L IL + YG GRPVY++ L+K + Sbjct: 178 TDEMAEAVGVSRVSARKYLNFLKELGILDVKVIYGTIGRPVYQHEYNPYKEHLIKNFL 235 >UniRef50_P39486 Probable C4-dicarboxylate response regulator dctR n=8 Tax=Bacillaceae RepID=DCTR_BACME Length = 228 Score = 237 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 135/226 (59%), Gaps = 5/226 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 VL+I+DD MV E+NR+++ Q+ GF AS + ++I DL ++D+YM Sbjct: 6 WTVLLIEDDPMVQEVNRQFIEQVEGFTVIAAASNGLEGVQLI--KQHQPDLTIIDMYMPS 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 ++GL L + K+DVI +++A+D T++ L YG VDY++KPF+ R ++AL +R Sbjct: 64 QDGLTTLQQIRANGYKTDVIAVTAASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQYR 123 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ + + ++ Q+ELD ++ + D LPKGL TLR + Q++ Q++ S Sbjct: 124 SFQVKISQKEHITQSELDSMLFQQFEEKADL--LPKGLNAVTLRRIQQYLSE-QNHPISA 180 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +E+A+ V I+RV+ R+YL +L + L S+ YG GRP+ RY ++ Sbjct: 181 EEVADGVGIARVTARRYLEFLEQENELKLSVEYGRVGRPINRYMLK 226 >UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacillales RepID=C0ZHY7_BREBN Length = 231 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLII+DD +AE+NRR+V ++ G++ G A+ ++AK+ DL+LLDIY Sbjct: 1 MIRVLIIEDDLRIAEVNRRFVEKVEGYEVIGIATNGQEAKD--QMEILQPDLVLLDIYFP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GLD L ++ +DVI++++A + + +++ YGV D++ KP +R ++ L + Sbjct: 59 DMDGLDFLSIIKEQFPTTDVIMLTAAKEVDAVVEAIRYGVFDFITKPLIFARLQQTLRNY 118 Query: 121 RQKKMALEKHQ----YYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 ++ + + + Q ++D+LI + + + KG+ TL + ++ Sbjct: 119 QEFRQKVSDWKKDTDQISQTQIDELIARTGQKKTPETKAVKGIDQITLDKISGFLMQT-- 176 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 E +TD ++ E ISR + R+YL +LV + YGV GRP Y+ Sbjct: 177 QEATTDLVSKETGISRSTARRYLEYLVAKGDAIADLSYGVVGRPERVYK 225 >UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dctR n=1 Tax=Bacillus halodurans RepID=DCTR_BACHD Length = 230 Score = 233 bits (595), Expect = 4e-60, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 4/226 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL+I+DD MV E+NR +V ++ GF GT +T E+ ++ + DLILLDI+M K Sbjct: 7 IRVLLIEDDPMVQEVNRMFVEKLSGFTIVGTTATGEEG--MVKTRELQPDLILLDIFMPK 64 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 ++GL + + D+I +++A D TIK L YGV+DYL+KPF R + ALT + Sbjct: 65 QDGLSFIKQIREQYIDVDIIAVTAANDTKTIKTLLRYGVMDYLVKPFTFERLKAALTQYE 124 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + ++K Q LD++I + + LPKGL TL+ + + ++ D S Sbjct: 125 EMFRKMQKEAELSQDSLDEMI-KQKQAQANMDDLPKGLHAHTLQQVIERLEEL-DEPKSA 182 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +E+ +V ++RV+ R+YL +L + + + YG GRP+ Y+++ Sbjct: 183 EEIGRDVGLARVTVRRYLNYLESVGQVEMDLTYGSIGRPIQTYKLK 228 >UniRef50_C1SJK3 Response regulator of citrate/malate metabolism n=5 Tax=Bacteria RepID=C1SJK3_9BACT Length = 228 Score = 233 bits (594), Expect = 6e-60, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 127/229 (55%), Gaps = 3/229 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLI++DD +A L+RR+ ++ GF G A+ L A E+ +L+LLD+Y Sbjct: 1 MIKVLIVEDDVNIANLHRRFTEKVEGFDVVGIANGLADAFEM--TEILKPELVLLDMYFP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + +G+D L + ++ +D+I+I++A D + +++++ G DY++KP RF ++L + Sbjct: 59 EGSGMDFLWKIRSSGILTDIILITAARDVSVLQEAVRGGAFDYIVKPVVFERFNKSLNRF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + + +Q ++D L+ S + + +PKG+ P TL+ + + + S Sbjct: 119 KDYLKEIRCEKTLEQNDIDSLLDRHSEAVINTQNMPKGIDPITLKKIIS-VFEKKHEAMS 177 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 +DE+ + SR + R+YL +L IL I YG GRP R+++ ++ Sbjct: 178 SDEVGRYIGASRNTARRYLEYLTGAGILTVDIDYGTVGRPEKRFKLVSD 226 >UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacillales RepID=C0Z7K6_BREBN Length = 253 Score = 232 bits (593), Expect = 7e-60, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 131/235 (55%), Gaps = 10/235 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD MV E+N++++ ++PGF G A+ +++ + DL+++DI+M Sbjct: 8 IRVLIMEDDPMVQEINKQFIERVPGFVVVGIAANGADGLKLV--KELTPDLVIIDIFMPI 65 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 ++G+ L L A+ DVIV+++A D TI+ L G +DY+IKPFQ R +++L +R Sbjct: 66 QDGVKALMELRAAKHAVDVIVVTAAKDKTTIQSMLRNGAMDYIIKPFQFERIKQSLENYR 125 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRR------LPKGLTPQTLRTLCQWIDAHQ 175 + + ++ Q E+DQL+ S ++ LPKGL T+ + + I+ + Sbjct: 126 EFRRRIDWEGTASQDEVDQLLFRKSREKEQADATPAREVLPKGLHAVTMEQIMRQIE-KE 184 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY-RIQAE 229 S D++A V I+RV+ R+YL +L + + YG GRP RY R+ + Sbjct: 185 SQPLSADDVAERVGIARVTARRYLDYLEKSGSVRMDVSYGGVGRPTNRYVRVTPQ 239 >UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacillales RepID=C0ZEJ9_BREBN Length = 239 Score = 232 bits (593), Expect = 8e-60, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 VLI++DD + ++N+R+V++I GF+ TA+ AKE++ T L+LLD+Y+ Sbjct: 6 VLIVEDDMRIIDINKRFVSKIEGFEVIATATNGTDAKELLSC--TRPQLVLLDVYLPDML 63 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 G +L+ + + DVI+I++A + ++++L GV DY++KP RF E L +R+ Sbjct: 64 GTELVWHIRQHYREVDVIMITAAKEMEMVQEALRGGVYDYIVKPLVFERFRERLESYRKH 123 Query: 124 KMALEKHQYYDQAELDQLIHGSSSNEQDPRRL-PKGLTPQTLRTLCQWIDAHQDYEFSTD 182 + + DQ +DQ++ ++ L PKG+ TL + + I D S + Sbjct: 124 VIRTREAVEVDQEVIDQMLTRRLVAPKNRDVLAPKGIDLLTLEKVIEAIRQTGDKGVSAE 183 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 E+ E+ SR + R+YL +LV + YG GRP +YR Sbjct: 184 EIGREIGTSRTTARRYLEYLVLEKKARADLIYGTVGRPERKYRYLPS 230 >UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XBI6_NAKMY Length = 228 Score = 232 bits (592), Expect = 8e-60, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 VL++DDD MVA ++ R++ GF+ G AST A + ++ DL+LLD+++ + Sbjct: 10 VLVVDDDFMVARIHCRFLQTQNGFRVDGVASTGIDALAKL--AELSPDLMLLDVHLPDMS 67 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 GL++L + + DVIV+++ D ++++ G + YL+KPF+ + E L +R+ Sbjct: 68 GLEVLRIARQEHPRVDVIVVTAERDLDAVREAWQGGAMSYLVKPFEYTALAEKLAHFRKA 127 Query: 124 KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 + L+ + DQ +DQL S + LPKGL+ +T + + + A D S E Sbjct: 128 RALLDTAE-VDQGAIDQLFGVGGSTTRPRADLPKGLSRETADLVRRSLSA--DEALSATE 184 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 A V ISRVS R+YL +L + + YG TGRP YR+ Sbjct: 185 CAERVGISRVSARRYLEYLEQTGVAQVRLKYGKTGRPERLYRLV 228 >UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJK0_BACSK Length = 236 Score = 231 bits (589), Expect = 2e-59, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 146/238 (61%), Gaps = 2/238 (0%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLI++DD MVA + + Y+ +PGFQ A +E+AK+ + + T I L+LLD+YM Sbjct: 1 MIQVLIVEDDPMVAAVVKSYLRDVPGFQVAAEAGGVEEAKQHLRENKT-IQLVLLDVYMP 59 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 ENGL LLP L + ++DVI++++A+D +I+ +L +G VDY++KP+Q SRF++AL + Sbjct: 60 GENGLSLLPYLRENKIEADVILMTAASDKESIETALRFGAVDYILKPYQFSRFQKALHAY 119 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + K + DQ +LD+ + + + LPKGLT +TL+ + + I FS Sbjct: 120 QSRYNFFRKEETTDQKQLDETFFE-KKHTLEKQTLPKGLTKETLQEVWEAIRQVGQDSFS 178 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 T+++A +SRVS +KYL +L +L YG GRP++ YRI ++ +K Y Sbjct: 179 TEDIALHARLSRVSVKKYLTFLKELDVLQLQPTYGSIGRPIHIYRIDKDNVRKIKPYL 236 >UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae RepID=B1LPU5_ECOSM Length = 241 Score = 230 bits (587), Expect = 3e-59, Method: Composition-based stats. Identities = 136/239 (56%), Positives = 175/239 (73%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLI+DDD +VA++ RR V Q P F+CCG A +L +AKEII + DLILLD+Y+ Sbjct: 1 MNNVLIVDDDILVADVIRRIVEQTPAFKCCGIALSLGQAKEIISVNKKLADLILLDLYIN 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 K+NGLDLLP LH+ CKSDVIVIS+A D+ATIKDSLHYGV DYLIKPF SR ++LT W Sbjct: 61 KDNGLDLLPFLHSIHCKSDVIVISAADDSATIKDSLHYGVSDYLIKPFHISRLVDSLTRW 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + KK LE + ++Q+ELD L H N + R LPKGL+ TLR +C+WID HQ +F+ Sbjct: 121 KHKKTLLESQKIFNQSELDLLTHKIIPNTEKIRHLPKGLSTDTLRIICRWIDEHQHKKFT 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 +ELA+ + ISR+SCRKY+IWLV+CHIL GVTGRP YRY I+ ++Y +K+Y + Sbjct: 181 LNELASGIKISRISCRKYIIWLVSCHILAFDFSCGVTGRPAYRYWIRHQYYPYIKKYSE 239 >UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPK0_9FIRM Length = 233 Score = 228 bits (582), Expect = 1e-58, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 130/229 (56%), Gaps = 5/229 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+V+I++DD MV EL+R+Y++++ GF G A E+ II + L ++DIYM Sbjct: 5 ISVVILEDDPMVLELHRQYLSKVKGFNLTGWARDGEEGVNII--AKLQPHLAIVDIYMPG 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GLD+L + +DVI++++A D +++ + YG VDY+IKPF +RF++AL +R Sbjct: 63 ISGLDVLKHIRRQEWNTDVILVTAAHDTDSVQQGIQYGAVDYVIKPFTFTRFKKALETYR 122 Query: 122 QKKMALEKHQYY-DQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L + Q ++D ++ + D LPKGL TL + + + Y F+ Sbjct: 123 RYFCKLRTKEQLISQKDID-MLKNNIVGLSDKSMLPKGLQQTTLDLIVELLRQKNGY-FT 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 E+A+ + ISRV+ ++YL +L IL + YG GRP+ ++ + E Sbjct: 181 VKEIASALGISRVTVKRYLNYLQEGGILKGMLSYGPVGRPLQKFLVNKE 229 >UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcus faecium RepID=C9AP26_ENTFC Length = 238 Score = 228 bits (582), Expect = 1e-58, Method: Composition-based stats. Identities = 89/240 (37%), Positives = 129/240 (53%), Gaps = 5/240 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLII+DD MVAELNR +V IP + +E+ K+ DL+LLD+YM Sbjct: 2 MTNVLIIEDDPMVAELNRTFVESIPNMNVIESFRNVEEGKKYF--RQKNADLLLLDVYMP 59 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 E+G+ L L VI+I++A D TIK+ + YG +DYLIKPF RF+ A+ + Sbjct: 60 GESGIHFLSWLRQQGNDIPVILITAADDIETIKNVIRYGALDYLIKPFTLQRFQLAIEKY 119 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPR--RLPKGLTPQTLRTLCQWIDAHQDYE 178 ++ + DQ +DQ+ + ++ + P LPKGL+ TL+ + I ++ Sbjct: 120 LAFSQTIQTTEKADQKLIDQVFNHTTPIHETPSFIDLPKGLSKLTLKKISASIL-KEETI 178 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 FST ELA + +SR+S +KYL +LV IL I Y GRP+ Y + L YC Sbjct: 179 FSTKELAQKSALSRISVKKYLNFLVEQDILNERIRYLEIGRPLTCYELTKNGRKKLTDYC 238 >UniRef50_C7MRE3 Response regulator of citrate/malate metabolism n=2 Tax=Actinomycetales RepID=C7MRE3_SACVD Length = 227 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 111/233 (47%), Gaps = 11/233 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL++DDD MVA+++ YV + PGF G A + A + D DLILLDIY+ Sbjct: 1 MIRVLVVDDDFMVAKVHSGYVNRTPGFTVIGAAHSGTAALRM--ARDERPDLILLDIYLP 58 Query: 61 KENGLDLLPVLHN--ARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 +GL +L L A DV+VI++A D TI+ SLH G + YLIKPF + + L Sbjct: 59 DIDGLTVLRELRADPATVDIDVVVITAARDVDTIRGSLHGGALHYLIKPFSYAVLRDQLD 118 Query: 119 GW---RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 +K L Q E+D + G LPKGLT QT + + H Sbjct: 119 HVSSLHRKLERLSARPAAAQHEVDDVFSGRPRRTA---SLPKGLTEQTAALVRTALTEHP 175 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 S E A+ +SR S R+YL + YG TGRP RY + Sbjct: 176 -EGLSATECAHVTRLSRPSTRRYLEHFAETGQAEVRLRYGGTGRPERRYHWRG 227 >UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinomycetales RepID=C7QAY5_CATAD Length = 243 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 11/230 (4%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VL++DDD VA+++ YV +IPGF G A + +A ++ DL+L+D+Y+ Sbjct: 13 TVLVVDDDYRVAKIHAAYVDRIPGFTVAGQAHSAAQALHLVAA--IRPDLVLMDVYLPDG 70 Query: 63 NGLDLLPVLHNA------RCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 +GL ++ L A D +VI++A D +T++ ++ G V YL+KPF E Sbjct: 71 DGLTVIRKLLEAPESAASGPHPDFMVITAARDVSTVRTAMQLGAVHYLVKPFGYPAMAEK 130 Query: 117 LTGWRQKKMALE--KHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAH 174 LT + + ++ DQA++D+L P KG + TL + + A Sbjct: 131 LTSYLDLRRRMQTLNTADADQADVDELFGLLRGQPALPTLPAKGHSAPTLELVRSAVRAA 190 Query: 175 QDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + S E+A V ISR + ++YL +L ++ + YG TGRP +RY Sbjct: 191 PG-DISASEVAERVGISRPTAQRYLSYLTRHGVVRLQLRYGTTGRPEHRY 239 >UniRef50_B7VN90 Response regulator of citrate/malate metabolism n=53 Tax=Gammaproteobacteria RepID=B7VN90_VIBSL Length = 231 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 V++I+DD +AEL+ RY+ Q+ GF G A+T +A + DL+LLD+Y+ Sbjct: 6 RVMVIEDDIAIAELHHRYLEQMGGFDVVGIATTQSEAL--MQLDILKPDLVLLDVYLPDG 63 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 GLD+L + + DVI+I++A D T++ ++ GVVDYL+KP R E AL ++ Sbjct: 64 CGLDILNHVRGSNQGCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLEAALKKYQS 123 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNE-QDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ E +Q +D+++ ++ + + LPKG+ TL + + + Sbjct: 124 QQQEFESVSDLNQGLVDKMLQANAKADSRKVSTLPKGIDGVTLDKIRAIFQQADIADITA 183 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 DE + SR + R+YL +L+ L ++YG GRP Y Sbjct: 184 DEAGERIGASRTTARRYLEFLITTGELVADLNYGSVGRPERCY 226 >UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus group RepID=Q73DS2_BACC1 Length = 235 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 143/232 (61%), Gaps = 3/232 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLI++DD MVA LN Y+ Q GF+ ++++ A E++ + +DL+LLDI+M Sbjct: 1 MIKVLIVEDDPMVAMLNTHYLEQAGGFELVQAVNSVKSAIEVL--EASRVDLVLLDIFMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +E G +LL + N + D+++IS+ D +IK +L YGVVDYLIKPF RF+EALT + Sbjct: 59 EETGFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTIY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDP-RRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R+K +++ Q Q+ELD LI E + LPKGLT QT++ + + I++ F Sbjct: 119 REKLTFMKEQQKISQSELDSLILQKEKREPTVMKELPKGLTKQTMQLIWKKIESLNGRAF 178 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHY 231 +TDE+A V +SRVS RKY+++L +L + Y GRPV + R ++ Sbjct: 179 TTDEMAQLVGVSRVSIRKYVMFLTEIGVLENEMVYQHVGRPVSKLRCIDQNK 230 >UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIR5_9FIRM Length = 221 Score = 226 bits (578), Expect = 4e-58, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M V+I++DD M+ ELNRRY + F T S +A + + P DL++LD YM Sbjct: 1 MYTVVIVEDDPMITELNRRYAEKDGRFTVAQTFSQPRRALDWL--RHNPADLVILDFYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + NGL+ L + A +SDVI+I++A DAAT++ GVVDYL+KPF RF AL + Sbjct: 59 QMNGLEFLRAVRAAGVESDVIMITAANDAATVEALTRLGVVDYLVKPFAYERFCRALDAF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 +++ A+ DQ LD L+H LPKG+ QT + + + ++ Sbjct: 119 CRRRSAMRG--SLDQTALDNLLHAVPPAPAT---LPKGMQAQTQERVLACMRDDPGHAYT 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 +E+A +S V+ R+Y+ +L + ++YG GRP YR+ Sbjct: 174 CEEIAAASGLSVVTVRRYMGYLAQQGQVTGDMNYGTGGRPCLVYRL 219 >UniRef50_C1SFW1 Response regulator of citrate/malate metabolism n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFW1_9BACT Length = 231 Score = 225 bits (575), Expect = 8e-58, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 2/230 (0%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLII+D+ + +L+R ++ ++ GF+ G A +L++A+E I DLILLD++ Sbjct: 4 IQVLIIEDNERILKLHRLFLEKVDGFELVGIAKSLKEAEETIAV--LQPDLILLDLFFPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ L + DVI+I++ D +++D+L G DY++KP RF+E+L ++ Sbjct: 62 GHGMSFLKHMRMQDINFDVILITADKDVNSLQDALRNGAFDYIVKPVVFDRFKESLEKYK 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 K + Q +Q + D + + E +PKG+ P TL+ + + + + Sbjct: 122 TFKTGISAKQTIEQKDADSIFMSAQQVEYTDDDVPKGIDPLTLKKVKDTLVEYGERGICA 181 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHY 231 E + SR++ R+YL +LV+ + I YG GRP +Y + E Sbjct: 182 QETGKLIGASRITARRYLEYLVSGGFISADITYGSVGRPERKYFYKPEKN 231 >UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65LB3_BACLD Length = 238 Score = 225 bits (575), Expect = 9e-58, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + V I++DD A+++++ +++I GF G A + AK+++ D DL+LLDI++ Sbjct: 4 LQVFIVEDDIRNADIHQKLISKIDGFSVIGIAENFQDAKDLLP--DVKPDLVLLDIFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G++LL ++ +DV++I++A + ++ ++ G VDYLIKP SR +E L +R Sbjct: 62 GSGMELLWLIRQTLRHTDVMMITAAKEVEYVEQAIRAGAVDYLIKPIMFSRLKETLLNYR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSS---NEQDPRRLPKGLTPQTLRTLCQWI-DAHQDY 177 ++ + + DQ ++D L+ S + PKG+ TL+ + + + Sbjct: 122 SYRLKVNEMSSIDQTDVDSLMAKRRSITKEQIAKADYPKGIDGLTLKKVAGVLNKSENSD 181 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + + L + +SR + R+YL +L + T ++YG GRP RY+ Sbjct: 182 GITAESLGRTIGVSRTTARRYLEFLAAEKHVKTELYYGTVGRPERRYK 229 >UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=Bacillus halodurans RepID=CITT_BACHD Length = 230 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 112/225 (49%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 VLII+DD VA++ + V P F T T +A + + +DLILLD+Y+ Sbjct: 5 YKVLIIEDDFRVAQIQEQMVNDHPYFHVISTCRTGGEALDYLSEKAAALDLILLDVYIPD 64 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 GL+LL + D++++++A + T++++L G++DYL+KP Q + L + Sbjct: 65 VKGLELLWAIREKFRDVDIMMVTAAKEVDTVQEALRGGIIDYLLKPVQKEVLHQRLDAYV 124 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 QK+ + + Q ELDQL + LPKG+ TL + ++ + + Sbjct: 125 QKRELFGERRQVSQEELDQLRQVQVRVQVGETPLPKGIDRLTLEKVVNALEEAETQGLTA 184 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 E A + SR + R+Y +L++ ++YG GRP RY + Sbjct: 185 MEGARLIGASRSTVRRYFEYLIHTKKAKAEVNYGDVGRPERRYFL 229 >UniRef50_A4SN90 Two-component system citrate/malate response regulator, CitB n=2 Tax=Aeromonas RepID=A4SN90_AERS4 Length = 223 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 9/225 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI +LI++DD +AE++RR+V ++ GF+ G TL A+E I DL+LLD+++ Sbjct: 1 MIKILIVEDDPAIAEIHRRFVQRLAGFEVLGVTLTLFDAREQIGI--LKPDLVLLDVWLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G LL L A DVI++++A +AA +++++ GVVD+++KP R + L + Sbjct: 59 DGEGFALLRELRQAGACLDVILLTAAREAAALQEAMRLGVVDFILKPVVFERLRDTLDNY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q + AL DQ +D L G+ + LPKG+ TL+ + + S Sbjct: 119 CQSRAAL---ADIDQQAVDALF-GTPLQQVAAGGLPKGIDALTLQRVLAAL---TGVGAS 171 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +E+ N V +SR + R+YL +LV + + YG GRP RY+ Sbjct: 172 AEEIGNRVGVSRTTARRYLEFLVGQQLASPELEYGTVGRPERRYQ 216 >UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=Vibrionaceae RepID=A7JZZ2_VIBSE Length = 228 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 V+II+DD +AEL+ +Y++Q+ G + G A+T +A+ + DL+L+D+Y+ Sbjct: 6 RVMIIEDDLAIAELHHKYLSQLAGLEVVGIATTRMEAE--MQLDILKPDLLLMDVYLPDG 63 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 GL++L L DVI+I++A D T++ ++ GVVDYL+KP R + AL + Sbjct: 64 TGLEILNTLRANNQTCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLDAALKKYVS 123 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 ++ L+ + DQ +D+++ ++ + P RLPKG+ TL + + + D Sbjct: 124 QRQQLDIAESLDQNLVDKMLQSHANQDNLPNRLPKGIDGVTLDKIRELFP--NGSVLTAD 181 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 E ++ SR + R+YL +L++ L ++YG GRP Y+ Sbjct: 182 EAGEKIGASRTTARRYLEYLISTGELEADLNYGSVGRPERCYK 224 >UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7M1_9BACT Length = 228 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+VLI++DD MVA ++R+++ + GF G S+ + A E + P+ L++LD+++ Sbjct: 5 IDVLIVEDDPMVAAIHRQFIGAVSGFIVAGVVSSGKDALEFL--QRHPVRLVILDVFLPG 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ L + VIV+S++ D TI L G DY+IKPF R + +L ++ Sbjct: 63 MDGVATLQKIREMNRTVGVIVVSASRDTNTINAVLKAGAFDYVIKPFVFERIQTSLRSFQ 122 Query: 122 QKKMALEKH-QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q + L + DQ ELD+L+ LPKGL PQTL+ + + H S Sbjct: 123 QLENRLNRGADQIDQKELDRLLQVQQKETST-NDLPKGLNPQTLQQVKNLL-GHAASPLS 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 + E A + ISR++ R+YL +LV + Y GRP RY ++ Sbjct: 181 SVETAQALKISRITARRYLEYLVAAGEATLELEYQKVGRPTNRYALRK 228 >UniRef50_UPI00019732B8 two-component response regulator yufM n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019732B8 Length = 230 Score = 223 bits (570), Expect = 3e-57, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M +V+I++DD MVA +NR+YV P F + + A + + +DLI+LD YM Sbjct: 1 MYSVIIVEDDPMVASINRQYVELEPSFSVKQIFKSGQDALSWLSREE--VDLIILDYYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G + + LH+ VI+++SA D+A +++ L GV+DYL+KPF+ SRF +AL+ + Sbjct: 59 LMTGQEFIDRLHSMGKAPSVIMVTSAGDSAIVQELLSRGVLDYLVKPFERSRFRQALSRF 118 Query: 121 RQKKMALEKHQYYDQAELDQLI-HGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 Q + L+ +QAE+D+L+ H ++ L KGL+ TL + ++ + F Sbjct: 119 AQTRSCLDGSPELNQAEIDRLLSHAQPASPSCQTELAKGLSETTLTLIRNFLKSRPGELF 178 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S++++A +V++SR++ R+Y+ +++ + +S+ Y GRP +Y Sbjct: 179 SSEQIAEQVHLSRITIRRYMNYMLEIGEIVSSVDYQTGGRPSIKY 223 >UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AHC9_BACMY Length = 231 Score = 223 bits (569), Expect = 4e-57, Method: Composition-based stats. Identities = 96/231 (41%), Positives = 144/231 (62%), Gaps = 3/231 (1%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 +I++DD MVA LN+ Y+ Q+ GF+ A+++++A EI+ ++ ID ILLDI+M + G Sbjct: 1 MIVEDDPMVAMLNKHYLEQVGGFELVHIANSVKEAVEIL--KESSIDFILLDIFMPVDTG 58 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 +LL + N + DVI+IS+ D +IK +L YGVVDYLIKPF RF+EALT +R+K Sbjct: 59 FELLLHIRNQEKEIDVIMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTAYREKF 118 Query: 125 MALEKHQYYDQAELDQL-IHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 + +++ Q Q+ELD L + + LPKGLT QTL+ + + I++ F+TDE Sbjct: 119 IFMKEQQKISQSELDTLILQKEKVETYVNKELPKGLTRQTLQLIWKQIESLHGQAFTTDE 178 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLL 234 +A V ISRVS RKY+++L +L + Y GRPV + R E+ L Sbjct: 179 MAQLVGISRVSIRKYVMFLTEIGVLENEMVYQHVGRPVSKLRCIDENKIRL 229 >UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium RepID=A6M0I4_CLOB8 Length = 231 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 138/232 (59%), Gaps = 6/232 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI +I++DD MV ++N +++ +I GF + L +AKE + +DLILLDI++ Sbjct: 1 MIKTMIVEDDPMVRQINSKFLKKIEGFSLEKAVANLSEAKEFLMQKQ--VDLILLDIFLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 ENG+DLL L SDVI+I++ +KD+ YGVVDYLIKPF RF E+L + Sbjct: 59 NENGIDLLKWLRQNEILSDVILITADKSVERVKDAFRYGVVDYLIKPFTFERFNESLNIF 118 Query: 121 RQKKMALEKHQYYDQAELDQLI----HGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 R++ + E Q +Q++LD+ I + ++N + L KGL T ++ ++ ++ Sbjct: 119 RERLNSFENSQTMEQSDLDKFILSNKNKKTNNSETKPNLEKGLNKYTYNSIANELNNTKE 178 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 F+T++L+ ++ I++V+ RKYL ++ L I YG GRP+Y+Y+I+ Sbjct: 179 EYFTTEDLSEKLGIAKVTVRKYLDYMSKQGELEKIIEYGKIGRPLYKYKIKG 230 >UniRef50_A3JET4 Response regulator of citrate/malate metabolism n=5 Tax=Gammaproteobacteria RepID=A3JET4_9ALTE Length = 231 Score = 223 bits (568), Expect = 5e-57, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 6/229 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +LI +DD +AE+ RR++ ++ + CG A TL A+E DLILLD+Y Sbjct: 4 IRLLIAEDDRQIAEIQRRFIQRLEQVELCGIAHTLADARE--QAEVLKPDLILLDVYFPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGLDLL L + SDVI+I++A + T++ +L GV DY++KP R EEA+ + Sbjct: 62 GNGLDLLRELRASNSSSDVILITAAKEVETLRTALRGGVFDYILKPLAFERLEEAINRFC 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPR--RLPKGLTPQTLRTLCQWIDAHQDYEF 179 L ++ Q E+D L+ +S + RLPKG+ TL + + + + Sbjct: 122 DHVERLSALKHLGQDEVDALLPRNSGENGNDSHHRLPKGIDVITLDRIREVVAD--GKPW 179 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 S +E+ + SR + R+YL ++ L + YG GRP RYR+Q Sbjct: 180 SAEEVGGAMGASRTTARRYLEYMTGTRTLAAEVTYGSIGRPERRYRMQR 228 >UniRef50_C1TQF1 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQF1_9BACT Length = 230 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 7/229 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD MV ++++R+V IPGF+ G + +++ +DL++LDIYM + Sbjct: 4 IRVLIVEDDPMVMDIHKRFVLSIPGFELVGLGANGMDGLKVL--EQRSVDLVILDIYMPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+ L + R DVIV+S+A + T++D + +G DY++KPF RF+EA+ G+ Sbjct: 62 LDGLETLHEIRRRRRNVDVIVVSAAHETDTVRDVMRFGAFDYIVKPFTYERFKEAMEGYL 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + DQ +D+++ + ++D R LPKGL L + + + S Sbjct: 122 LYWA---QKGDLDQGAIDRIMRRGAREKRD-RCLPKGLGSVQLDRVRSILMEEEG-ALSA 176 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEH 230 DE+A +SRV+ R+YL +LV+ + + GRPV YR+ Sbjct: 177 DEVAVRAGVSRVTARRYLEYLVSINRAAVEPLHRDVGRPVNLYRLLDAK 225 >UniRef50_C1I809 Two-component system response regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I809_9CLOT Length = 232 Score = 221 bits (563), Expect = 2e-56, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 6/231 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I V I++DD MV E+N R++ ++ GF G AS++E+A I + DL+LLDI++ Sbjct: 4 IKVFIVEDDPMVKEINTRFLEKLEGFIVVGDASSIEEA--KIKITKEKADLVLLDIFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+DLL + + D I+I++ +++ ++ YG +DYLIKPF+ RF+EAL+ +R Sbjct: 62 GKGIDLLKWIRSKEINIDTILITADKCKSSVDEAFKYGAIDYLIKPFKFERFKEALSNYR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSS----NEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 + + L +Q +DQ I ++ E + L KGL+ +T + ++ Sbjct: 122 NRFVELNNIDNINQDYIDQYILNINANFLDEEMQEKELCKGLSLKTYNKIINYMIQKNGQ 181 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 + + +E+A ++RV+ R+YL +V + + YG GRP Y ++ Sbjct: 182 DLTAEEIAKGSGLARVTARRYLEKMVEEGKVEINQEYGKIGRPTNYYILKK 232 >UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJA4_BACSK Length = 223 Score = 220 bits (561), Expect = 4e-56, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 3/224 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + ++I +DD VAE++ +++ ++ A +A + D++LLD+Y+ Sbjct: 1 MKIMIAEDDYRVAEIHEQFLKKMKNVDVVAKAQNATEAVSLANMHQ--PDVLLLDVYLPD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+D+LP LH A +++I++A + +L GVVDYL+KP R ++++ + Sbjct: 59 RLGVDVLPELHQACPDMQIVLITAATEKTIFHKALQNGVVDYLVKPIAFERLQQSVDKAK 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + L+ Q DQ DQ G+ + P LPKG+ TL + + Q + Sbjct: 119 SLRKWLQDKQPVDQQAADQFFQGAKTKHAPPEALPKGIDQLTLERVRTLLRQ-QSEGVTA 177 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + L + SR + R+YL +L++ + + YG+ GRP +Y Sbjct: 178 EALGRKFGASRTTSRRYLEYLISTNEAKAELEYGIVGRPERKYW 221 >UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=Bacillus RepID=CITT_BACSU Length = 226 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 120/229 (52%), Gaps = 3/229 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI++ I +DD VA+++ R + Q+ GF+ G A+ ++ ++ + DL+LLDIYM Sbjct: 1 MIHIAIAEDDFRVAQIHERLIKQLDGFKIIGKAANAKETLALL--KEHKADLLLLDIYMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 E G L+P + + + D+++I++A + ++++L G+ YLIKP A +F + L + Sbjct: 59 DELGTALIPDIRSRFPEVDIMIITAATETRHLQEALRAGIAHYLIKPVTADKFRQVLLQY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 ++K+ L Q+ +D + LP G+ TLR + + + + Sbjct: 119 KEKRKLLMSQPEVSQSMIDHIFGNGVKTALPAEDLPTGINSITLRKIKEAL-QTASEGLT 177 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 +EL ++ SR + R+Y +LV+ + YG+ GRP +Y + A+ Sbjct: 178 AEELGEKMGASRTTARRYAEYLVSKEEARAELEYGIIGRPERKYYLAAD 226 >UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8G181_DESHD Length = 225 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPG-FQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 I VLII+DD MVAE N+ YV QI F+ GT T +A E + DLILLD+++ Sbjct: 4 IRVLIIEDDPMVAEFNKSYVEQIGHPFKVVGTCFTEAQALETL--KTNMPDLILLDVFLP 61 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+ LL + + DVI+I++A D+ T++++L YG VD+LIKPF RF++AL + Sbjct: 62 NGNGMHLLKTIRDNNFLLDVILITAAKDSVTVQEALRYGAVDFLIKPFGFKRFKQALLNY 121 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 K ++ Q +QA+LD + LPKG+ TL+ + ++ H + S Sbjct: 122 VHLKKVIDTEQEINQADLDSRF-DFLEIDYTTSSLPKGVHLLTLKLITDYLYDHPN-PKS 179 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 E+A ++++SR++ KYL LV + S+ Y GRP Y+++ Sbjct: 180 CHEIAADLSMSRITAWKYLEHLVKQGQVTVSLEY-KVGRPTKLYKLK 225 >UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammaproteobacteria RepID=C3LT43_VIBCM Length = 227 Score = 217 bits (554), Expect = 2e-55, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 115/224 (51%), Gaps = 3/224 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+VLI++D+ +A+++ Y+ Q F+ G A ++ +A+ ++ LI LD Y+ Sbjct: 5 IDVLIVEDETSIADVHSFYLKQTARFRPVGVAQSINEARNMV--RILKPKLIFLDNYLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G++ L L + DVI I++A+D T+++++ GV DYL+KP R + +L + Sbjct: 63 GRGIEFLKELTHQPQAPDVIFITAASDMETVREAVRCGVFDYLLKPIAYDRVQNSLERYL 122 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + +L + +Q +D+L + + +Q LPKG+ TL + + ++ Sbjct: 123 KYISSLRANDSVNQRHVDELFNFQAKTDQ-LDGLPKGIDELTLIKIQEIYHHEPQAAYTA 181 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + L + IS+ + R+YL + V L I +G GRP Y+ Sbjct: 182 ELLGQAIGISKTTARRYLEYCVASGFLEACIQHGRVGRPERLYQ 225 >UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=A6W416_KINRD Length = 238 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 115/231 (49%), Gaps = 12/231 (5%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VL++DDDA VA ++R YV +P F CG + T DL+LLDI++ E Sbjct: 11 RVLVVDDDATVALVHRGYVETLPRFTVCGVVHRGADVLPAV--RATAADLVLLDIHLPDE 68 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +GLD+L L DV+ I++A D T++D++ GV YL+KPF + F E + + Q Sbjct: 69 SGLDVLRRLRAHGVDVDVVAITAARDVDTVRDAMAGGVWHYLVKPFSLATFAERMEAYAQ 128 Query: 123 KKMALEKH---QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWID----AHQ 175 ++ + Q E+D+L+ +S + LPKGL+P+TL + + Sbjct: 129 HRLEFARRDGSDALGQEEVDRLL---TSRRRSASALPKGLSPRTLDVVVDHLRAGAGGDG 185 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + S ELA I+RVS R+YL L + YG GRP YR Sbjct: 186 TGDVSAAELAARCGIARVSVRRYLEHLERAGLAEVRPRYGRAGRPENGYRW 236 >UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX8_BACP2 Length = 233 Score = 216 bits (551), Expect = 5e-55, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLI +DD +A ++ Y+ QI GFQ G A + + E + +DLILLD+YM Sbjct: 3 MKVLIAEDDFRIAAIHASYIQQIEGFQVAGKAKSAKDMWEAL--QQEQVDLILLDVYMPD 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 E G +LLP+L + DV++I++A + ++D+L YGVV YLIKP A +F + LT ++ Sbjct: 61 ELGTNLLPLLRERYPEVDVMIITAATETTLLRDALQYGVVHYLIKPVTAQKFAQVLTEYK 120 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDP--RRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +KK + +Q +D ++ R LP G+ TL + I++ D Sbjct: 121 EKKDMINSKDEVNQTMIDLFFGQMQEEPKEKGDRDLPTGINSLTLDKVKTLIESEND-GI 179 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S +EL ++ SR + R+Y+ +LV + YG+ GRP +Y Sbjct: 180 SAEELGEKMGASRTTARRYVEYLVTTGECRAELAYGIIGRPERKY 224 >UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacillaceae RepID=B1HPS7_LYSSC Length = 229 Score = 215 bits (549), Expect = 9e-55, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 5/227 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL+I+DD VA+++RR++ +I GF A+T E+A + + LILLD+++ Sbjct: 4 IEVLVIEDDVRVADVHRRFLEKIEGFTVIACANTGEEALDWL--QSFAPQLILLDVFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+DL+ + S +I+I++A +A ++ + V DY++KPF + +E++ +R Sbjct: 62 ILGVDLIDKIKKMSPTSSIILITAATEAHIVQKAYRKNVTDYILKPFTFDQLKESIEKFR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSN--EQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 K + L+ ++ + Q ++ L ++S+ E LPKG+ T+ + ++ +D Sbjct: 122 FKHLLLQNNEKFTQEKIQCLWPKTASSIPEDTQLLLPKGIDLTTMNHVINYLSTRKD-GS 180 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + + L + +SR + R+YL +LV + + YG GRP RY I Sbjct: 181 TAELLGKNIGVSRSTARRYLEFLVTQKQAYIELTYGTVGRPERRYFI 227 >UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACD4_CARHZ Length = 220 Score = 215 bits (549), Expect = 9e-55, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI +I++DD MV E+N+ ++ ++ GF+ + + + + +L++LDIY+ Sbjct: 1 MIKTVIVEDDPMVLEINKNFIKEVEGFEIIAALKSGSELLNFL--KNHSPELLILDIYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL LL + DV+ I++A + + L YGVVDY+IKPF+ R +AL + Sbjct: 59 DIDGLTLLKEIRRQNISVDVLAITAAQQGEIVAELLRYGVVDYIIKPFKKERLVKALLTY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + K + + + + Q ++D+L SS+ LPKGL TL+ + ++ + + Sbjct: 119 KNKYLKIGRKRSVQQEDIDRLFARSSAG----GELPKGLNDITLKKILSLLEETR-EPLA 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 E+A ISRV+ R+YL +L + I YG GRPV Y ++ Sbjct: 174 AAEVAKRAGISRVTARRYLEYLEREGLAGKEIRYGSIGRPVNYYYLR 220 >UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella RepID=A6WJS0_SHEB8 Length = 226 Score = 214 bits (547), Expect = 1e-54, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 122/225 (54%), Gaps = 2/225 (0%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M V+I++D+ VA L +Y+ ++ G AS + A+ ++ DL+LLD+Y+ Sbjct: 1 MHTVIIVEDEVEVAHLVAQYLFSTNRYKVIGMASDISTARSLLGA--ITPDLLLLDVYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NGL+LL L + +S+V+++++A + ++ ++ GV D+L+KP SR ++AL+ + Sbjct: 59 DGNGLNLLAELRSQGIRSEVVLLTAAKEVQILEKAMQLGVFDFLVKPVLLSRLDQALSRF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 +++ L + Q+ +D + + + RLPKG+ TL+ + + DA + + Sbjct: 119 ESRQLKLSATEELTQSVVDAFMEVPTGTTKAAARLPKGVDQLTLQKIREVFDAKPQDKLT 178 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + ++ +SR + R+YL +L+ C+ L YG GRP Y Sbjct: 179 AQMVGEKLGVSRSTARRYLEFLLECNELAADQSYGSIGRPERCYH 223 >UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XCK5_NAKMY Length = 231 Score = 213 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 6/229 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL+++D+ + A ++ YV +I GF+ A++ +A+ + + IDL+LLD+++ Sbjct: 1 MIRVLVVEDEPIAARAHKAYVERIGGFEVAAVANSRIEAERAL--AKGGIDLVLLDLHLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NGLDL + A DV+V+SSA DA ++ ++ G V YL+KPF + + LT + Sbjct: 59 DGNGLDLFRRIRAAGSTVDVMVVSSARDADVVRSAVAQGAVQYLLKPFAFNALRDRLTSY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R+ + + DQA + + + + LPKG+T +TL + + D S Sbjct: 119 REFAEQVAGAEDVDQASVVRALG--MLRAPNTGSLPKGMTKETLAIVVGALRELGDA--S 174 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 ++ + + +SR++ R+YL L + ++ ++ YG GRP RY ++ Sbjct: 175 ATQIGDFLGVSRITARRYLEHLADTNVAERTLKYGQVGRPETRYGLRRA 223 >UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism n=4 Tax=Vibrio RepID=Q8D7P7_VIBVU Length = 224 Score = 212 bits (542), Expect = 5e-54, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI V+I++DD +AEL++ ++AQ+ F+ G A+ L A+++I + DL+++D Y+ Sbjct: 1 MIKVVIVEDDERIAELHQFFIAQLDNFEVIGIAANLTTAEQLIIAAK--PDLVIIDNYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G++L+ + K + IVI++A DA T+ + YG DYL+KP +R + +L Sbjct: 59 DGLGVELVQRCLVLQPKPECIVITAANDANTVHLAHRYGAFDYLVKPVNYTRLQASLLRL 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + K ++ + Q+ELD + H + + G+ TL+ + + H E + Sbjct: 119 MKMKQLVDSQKMVKQSELDGIFHAT----ELVVDEASGVDEFTLQQVVS-LFPHGHSEHT 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 +A + +S+ + R+YL V L+ + +G GRP YR + Sbjct: 174 AASVAALLGVSKSTARRYLDKAVERGDLYAFLAHGKVGRPTRCYRNKP 221 >UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42EA9 Length = 224 Score = 212 bits (542), Expect = 6e-54, Method: Composition-based stats. Identities = 91/214 (42%), Positives = 127/214 (59%), Gaps = 5/214 (2%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA N++YV +I GFQ G A ++AK+++ + I L+LLDIYM +NGL+LL + Sbjct: 1 MVASFNKQYVEEIKGFQLAGLAKCFDEAKQLL--EENDIQLLLLDIYMPGKNGLELLQYI 58 Query: 72 HNA-RCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKH 130 DVI++++A D +I+ +L YG VDY+IKPF+ RF +ALT +R+K L+ Sbjct: 59 RKETAYNVDVILVTAADDVDSIQTALRYGAVDYIIKPFEFERFNKALTTYREKHSLLKAQ 118 Query: 131 QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNI 190 Q Q ELD I E+ LPKGLTP TL+ + I ++ F+TDE+A V I Sbjct: 119 QSLKQEELDASILHQQ--EKKNMTLPKGLTPNTLQVIAAAIVDKENEPFTTDEIAETVQI 176 Query: 191 SRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 SRVS RKY+ +L L + YG GRP Y Y Sbjct: 177 SRVSVRKYIKYLKEIGALAERMTYGAIGRPFYVY 210 >UniRef50_C1TQ18 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ18_9BACT Length = 227 Score = 212 bits (542), Expect = 6e-54, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+VL+++DD MVA++++ YV + GF+ G KA + + P+ L++LDI++ Sbjct: 4 IDVLVVEDDPMVADIHQNYVNSVDGFRVVGMVDNGLKALDFL--RKRPVRLVILDIFLPG 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL L + + DVI+IS++ D AT+ +L G DY++KPF R + AL +R Sbjct: 62 LDGLGALERIRESGSNVDVIIISASRDKATVNKTLQAGAFDYIVKPFAFDRMKAALQAFR 121 Query: 122 QKKMAL-EKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q L E DQ ++D L+ + + LPKGL P L + + D S Sbjct: 122 QVVHRLTEGPNQVDQQDIDNLLLARNK-KNIQTVLPKGLNPNVLEKVEALL-TKVDKPLS 179 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + E A + +SR++ R+YL +LV Y GRP+ +Y + Sbjct: 180 SVETAEAIGVSRITARRYLEYLVASDKAVMEREYQEVGRPINKYEL 225 >UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinococcus RepID=Q1J047_DEIGD Length = 233 Score = 211 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 11/233 (4%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VL+++DD VA +NR + + P G+A+TL +A ++ DLILLD+++ Sbjct: 5 RVLLVEDDLRVARVNRDLLERDPDVHVVGSAATLAQADALLQA--LAPDLILLDVHLPDG 62 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +GL+LL +DV +I++A D A+++ +L G DYLIKPF +R E + R Sbjct: 63 SGLNLLRHWRAQGRTTDVALITAADDEASVRTALAQGAFDYLIKPFTGARLAEVVARHRA 122 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 +++ DQ+ LD+L+ S + LP+G+ P TL + Q ++ S + Sbjct: 123 RRV---PRGTLDQSHLDRLLGVSGGIPEP---LPRGIDPHTLERVAQVLEG-AGGALSAE 175 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY--RIQAEHYSL 233 E+ + ++SRV+ +YL LV YG+ GRP Y R+Q + + Sbjct: 176 EVGDRAHLSRVTAWRYLEHLVRVGRASLDHQYGLAGRPAKLYCARVQDASHGM 228 >UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q1B0_9ACTO Length = 226 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 124/231 (53%), Gaps = 11/231 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL+++DD + AE +R YV ++PGF C G A T +A +++ + IDL+LLD+ + Sbjct: 5 LRVLVVEDDPVAAEAHRTYVDRLPGFTCVGIAGTAARALQVLSHGQ--IDLVLLDMNLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW- 120 +GLD++ + A ++DV+ ++SA + + ++ + GVV Y++KPF + L+ + Sbjct: 63 GHGLDVVRRMRAAGNQTDVVAVTSAREVSAVQAAARIGVVQYVLKPFAFETLRDRLSAYA 122 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 RQ++ A DQ E+D+L+H +PKGL L + Q + ++ Sbjct: 123 RQRRAAESGQVVADQDEVDRLLH-----PATVSSVPKGLAGSVLDRVVQLLGNR--EGWT 175 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHY-GVTGRPVYRYRIQAEH 230 +E+A + SR++ R+YL L + + Y G +GRP Y +E Sbjct: 176 AEEVATSLGTSRITARRYLEHLADQGQALRTQRYDGRSGRPKVEYSWVSES 226 >UniRef50_C3JVF9 Response regulator receiver domain protein n=12 Tax=Actinomycetales RepID=C3JVF9_RHOER Length = 229 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNS---DTPIDLILLDI 57 MI VLI+DD+ ++A+ +R YV ++P F G + A + + D PIDL+LLDI Sbjct: 1 MIRVLIVDDEPLIAQAHRSYVERVPEFVVHGVVHSGNAAVRAVTAANATDQPIDLVLLDI 60 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 + +GLD+ L R D+I ++SA D ++ ++ G+V YL+KPF + F + L Sbjct: 61 GLPDASGLDVASALGGLRPSPDIIAVTSARDLEVVRSAVARGIVLYLLKPFTFAAFRDKL 120 Query: 118 TGWRQKKMAL-EKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + + + AL Q ++D+ + +++ D PKG QTL + + + Sbjct: 121 ERYLEYRAALPAGESAVSQHDIDRAMSALRTSD-DRAAAPKGFASQTLGLVAASVRDSEG 179 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + E+A V +SRV+ +YL L + +L YG GRP RYR Sbjct: 180 -PVTAAEVAASVGVSRVTAWRYLEKLADDGMLTRETEYGRAGRPQVRYR 227 >UniRef50_B1W256 Putative two-component system response regulator n=4 Tax=Streptomyces RepID=B1W256_STRGG Length = 217 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 105/223 (47%), Gaps = 12/223 (5%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA+L+ RYV+ + GF G A A DL+LLDIY+ +G+ +L L Sbjct: 1 MVAKLHSRYVSAMDGFAVVGVAHNGADALR--AAERLRPDLVLLDIYLPDMDGIGVLRAL 58 Query: 72 HNA------RCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKM 125 A R +D + I++A DA I+ +L G + YLIKPF S +E + + Sbjct: 59 RAAEERDASRPSADALFITAARDAGVIRAALRAGALHYLIKPFSRSALQEQMRHVASLRT 118 Query: 126 ALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELA 185 L++ Q ++DQ+ + R LPKGL T + + + +H D S E A Sbjct: 119 RLDRLGEARQEDVDQIFG---TRPPGSRELPKGLAAPTADLVERVLRSHPD-GLSASECA 174 Query: 186 NEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 +SRVS R+YL ++ YG TGRP RYR Sbjct: 175 EVGALSRVSARRYLEHFAGTGRAEVTLRYGGTGRPERRYRWTG 217 >UniRef50_UPI0001C42291 response regulator receiver/unknown domain-containing protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42291 Length = 227 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 3/226 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI++DD MVA +N+ Y+ ++ F + E+A I I+L+LLD+YM K Sbjct: 3 IKTLIVEDDPMVASINQGYLEKLDSFFVVDIVTNGEEALSKIRMKK--IELLLLDVYMAK 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGL+LL + K DVI+I++A I++ GVVD ++KPF RFE +L + Sbjct: 61 MNGLELLRRIRKENEKIDVIMITAADSPEIIEEIFRLGVVDCILKPFDFKRFERSLLTYY 120 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ + +Q+ +D + + + LPKG+ TL T+ + + + Sbjct: 121 KRYNMFNTKEPMNQSIIDSININEENKKLTFNPLPKGIDSITLNTIRKVLKEAP-CPLTI 179 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 EL V IS+++ RKYL +L + + ++Y GRP Y + Sbjct: 180 QELEKHVQISKITIRKYLEFLALNNEIKLDLNYSTKGRPSKLYSYK 225 >UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax=Enterobacteriaceae RepID=DPIA_ECO57 Length = 226 Score = 207 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +LI++D+ +AE++ Y+ IPGF A L +A+ +I LILLD Y+ Sbjct: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI--ERFKPGLILLDNYLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G++LL L A DV+ ++A+D T+ +++ GV DYLIKP R + LT +R Sbjct: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 Q+K LE Q ++D++ + + E LP G+ P TL + + + + Sbjct: 123 QRKHMLESIDSASQKQIDEMFNAYARGE-PKDELPTGIDPLTLNAVRKLFKE-PGVQHTA 180 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + +A + ISR + R+YL + + H++ I +G GRP Y Sbjct: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 >UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J1H7_DEIGD Length = 217 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 12/224 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI++DD +A L+R + F+ GTA TL+ A+ + DL+LLD+Y+ Sbjct: 4 IRTLIVEDDPRIARLHRGQLEGAGDFEVLGTAETLQVAR--VMAETLCPDLLLLDVYLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 GLDLL L + D +++++A+D +++++L G DYL+KP RF AL R Sbjct: 62 GRGLDLLRELRARGQRVDAVLLTAASDIPSVQEALALGAADYLVKPCTPERFALALDRVR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + AL + + Q LD L P GL P+TL + + + +S Sbjct: 122 E-RSALWQQEAVRQGHLDALFAR-------PPLPASGLDPETLHRVRATLRS--GRAYSA 171 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 EL + +SRV+ +YL LV + GRPV RYR Sbjct: 172 RELGQTLGLSRVTAWRYLEHLVEAGEACAATDVRGIGRPVKRYR 215 >UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=Cronobacter RepID=C9Y0H6_CROTZ Length = 260 Score = 206 bits (526), Expect = 4e-52, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 3/225 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M +VLI++D+ +A L+ V Q P + G A+TL A+ I D L+LLD Y+ Sbjct: 33 MTDVLIVEDENQLAALHAEMVKQHPYLRLVGMAATLADAERQI--RDKRPHLVLLDNYLP 90 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G+ L L VI I++A+D T ++ G DYL+KP R +L + Sbjct: 91 DGKGITLTESLTLKNSACSVIFITAASDMDTCSQAIRNGAFDYLLKPVSWKRLNHSLERF 150 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Q + + DQ +D L + + + P KG+ TL + + ++ FS Sbjct: 151 VQFREQQRVWKIVDQQNVDSLYQLQARSFR-PDSGAKGIEESTLTLVQRLFVDSREQIFS 209 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 D++ + +S+ + R+YL V L + YG G P YR Sbjct: 210 VDDVVSATGLSKTTTRRYLEHCVESGFLTVEMLYGKIGHPRRLYR 254 >UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax=Enterobacteriaceae RepID=CITB_KLEPN Length = 234 Score = 206 bits (526), Expect = 4e-52, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 4/225 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI++D+ M+AE+ + Q P F G A LE A++ + LILLD ++ Sbjct: 4 ITTLIVEDEPMLAEILVDNIKQFPQFDVIGIADKLESARKQLRL--YQPQLILLDNFLPD 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+DL+ + K +I I++ TI ++L GV DYLIKP R + L + Sbjct: 62 GKGIDLIRHAVSTHYKGRIIFITADNHMETISEALRLGVFDYLIKPVHYQRLQHTLERFA 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLP-KGLTPQTLRTLCQWIDAHQDYEFS 180 + + +L + Q +D L + + + +P P +G+ T + + Q + A + Sbjct: 122 RYRSSLRSSEQASQLHVDALFNIQAREQTEPASAPLRGIDESTFQRVLQ-LFADPTVVHT 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 D LA + S+ + R+YL V L I YG GRP Y Sbjct: 181 ADSLARILGSSKTTARRYLEQGVKNDFLEAEISYGKVGRPERIYH 225 >UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringens RepID=Q0SVM1_CLOPS Length = 222 Score = 206 bits (526), Expect = 5e-52, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 +LI++DD MVA +N+R++ + G T E+ +++ IDLILLD+Y+ K+ Sbjct: 4 KILIVEDDPMVALINKRFLENMGFKDILGPVQTEEEIIQLL--DKENIDLILLDVYLPKK 61 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 NG+D+L L + +DVI+I++A +K + YGV DYL+KPF+ RFEEA+ ++Q Sbjct: 62 NGIDILKSLRYKKYLTDVIMITAANSVEEVKRAFAYGVTDYLVKPFEFERFEEAINKYKQ 121 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 K L K + Q ++D + S + ++ LPKGL +TL + +++ ++ ++ Sbjct: 122 KNNLLNKREALSQQDIDVI----SKSLEEKIELPKGLNQKTLDRIMEFLKENKGKVWTLR 177 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 E+A E+ IS V+ +KY+ +L + + ++ G GRP Y+Y + Sbjct: 178 EIAYELKISNVTIKKYMDYLEDIKKVNVTLTSGNVGRPEYKYTL 221 >UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNG4_9FIRM Length = 226 Score = 206 bits (524), Expect = 6e-52, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD MVAE+N+++ + GF G A + + +DLI+LD Y+ + Sbjct: 4 IRVLIVEDDPMVAEINKKFTEAVTGFTVVGVVKDGAAALAFV--AQKSVDLIILDNYLPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 + G+++L L DVI++++A D+ T+ L GVV Y+ KPF+ R+ L +R Sbjct: 62 KTGVEVLAELRRRDQPVDVIMVTAADDSKTVSRILRQGVVGYIAKPFKFERYRAVLEAYR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + K Q ++D++ + P +PK + QT+ + ++ A+Q S Sbjct: 122 SFREKTLKKTNLAQEDIDEMFSVRQRS-AGPDDIPKNFSQQTMNLIIDFL-ANQTAPLSA 179 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +E+A V ISRV+ R+YL + V+ + ++ Y GRPV+R+++ Sbjct: 180 EEIAAGVGISRVTARRYLEYFVDLGRVQRTMEYLTVGRPVHRFKLV 225 >UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=Aeromonas RepID=A0KHN5_AERHH Length = 230 Score = 205 bits (523), Expect = 8e-52, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 L+I+DD + + V+ PGF G A +L +A + L+L+DI + +G Sbjct: 7 LVIEDDERIGSILAELVSSTPGFSLLGRAESLTQA--DLMMRAAQPQLLLVDISLPDGSG 64 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 L+ + L + ++ VI+++++ D TI+ +L+ GV DY+IKP + R +++L Sbjct: 65 LEWVNRLRSHNREAYVIMVTASCDVETIQQALNQGVQDYIIKPLRLFRIQQSLDEILTLH 124 Query: 125 MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDEL 184 + + +Q++LD+L+ ++ R PKG+ TLR + + + D FSTD + Sbjct: 125 RRICERGSLEQSDLDRLMGKVRPQGREVRDTPKGIDAITLRQVLELLAGEPDSAFSTDTV 184 Query: 185 ANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 A +++SR + R+YL +L + + ++YG GRP RY + Sbjct: 185 ALRLSLSRTTARRYLEYLESEDRVDVDLNYGQRGRPERRYHWRR 228 >UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKA0_BACSK Length = 240 Score = 205 bits (523), Expect = 9e-52, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 10/232 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI++DD + A + + + F G A T + K+++ DL+LLD+ + Sbjct: 6 IGVLIVEDDPVAASVYEQLIQSKLDFTIVGKAETAKATKQLLQV--ITPDLVLLDVQLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG+DLL + DVI+I+++ DA T+ ++ G Y++KP RF + L ++ Sbjct: 64 ANGIDLLFHIKQLDHHVDVILITASNDAQTVGEAKRGGAFSYMLKPIIVDRFFQTLEEYK 123 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNE-------QDPRRLPKGLTPQTLRTLCQWI-DA 173 + + + ++ +L H + + + LPKG+ TL+ + + + Sbjct: 124 AARTKGKPKSTDAERDIQRLFHHDKTGQPASNVGLRTSGPLPKGIDKHTLKNVEEALVHI 183 Query: 174 HQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + + +++ + S + R+YL +LV+ + + YG GRP RY+ Sbjct: 184 TESESLNAEQVGKRIGTSHSTARRYLEYLVSIGAVKVDVVYGHVGRPERRYK 235 >UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=Lactobacillales RepID=B3WBQ3_LACCB Length = 229 Score = 205 bits (523), Expect = 9e-52, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 5/233 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M N+LI++DD MV ++R Y+ +I F ++ T+ AK+++ + I L+LLDI ++ Sbjct: 1 MTNILIVEDDPMVQFIHRNYLEKIGTFDTIYSSETIADAKKLLASR--SIQLVLLDIRLK 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+D L L + DVI+I++A + + D+LH GV+DYLIKPF RFE+++ + Sbjct: 59 DGNGIDFLTDLRRTKQTVDVILITAANEVNIVNDALHLGVIDYLIKPFTLERFEKSIQRY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R K AL +Q++LD ++ L KGL+ TL+ + I F+ Sbjct: 119 RTKHQAL-VTDQLNQSQLDTYFEPQTTIPPTVD-LDKGLSKATLQLIQGAIKQLP-QPFT 175 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 +L E +S VS RKYL +L + H L Y TGRP Y++ ++L Sbjct: 176 VAQLTTETGLSHVSVRKYLSFLEDHHFLKGDTIYRKTGRPYKTYQMVTAPHAL 228 >UniRef50_A6W5B7 Two component transcriptional regulator, Fis family n=3 Tax=Actinomycetales RepID=A6W5B7_KINRD Length = 231 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 11/230 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNS--DTPIDLILLDIY 58 MI VL+++DD ++A + VA +PGF+ + +A + + DTPIDL+LLD+ Sbjct: 1 MIRVLVVEDDPLLAAGHAEKVAAVPGFEVVAAVHSGREALAAVGAAGADTPIDLVLLDMT 60 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + +GL +L L A +DVI +++A + AT++ +L GVV YL+KPF A+ EE L Sbjct: 61 LPDVDGLQVLRALRAAAVPADVIAVTAAREPATVRQALSMGVVQYLLKPFSAAALEERLR 120 Query: 119 GWRQKK---MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 + + + A DQ +D+ + + +G+ TL+ + + Sbjct: 121 AYARFRADVAAASGEHGIDQQAIDEALSQLRT-----AAPGRGVAAPTLQAVVAALRTAP 175 Query: 176 -DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S E+A +SRVS R+YL L + YG +GRP Y Sbjct: 176 SSQGLSAAEVAAATGLSRVSARRYLEHLSAAGRVRREPRYGGSGRPELAY 225 >UniRef50_B8K774 Response regulator of citrate/malate metabolism n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K774_VIBPA Length = 223 Score = 203 bits (518), Expect = 4e-51, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 8/225 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLII+DD +A L+ +++++ FQ A L +A + + T DL+++D Y+ Sbjct: 1 MFNVLIIEDDRNIAALHSQFISRDNRFQVLAIAENLAQAHSKL--AQTVFDLVIIDNYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G+D L + + I++++A D T++ +L G +DYL+KP RF ++L + Sbjct: 59 DGLGIDFLQQMRKLPNPPESILVTAANDVETVQKALRCGALDYLVKPLDYQRFAQSLEKF 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L Q ELD L + + TL+ + H + E S Sbjct: 119 ALVQHTLSHGISLAQGELDALFQKGVPSNKKSST-----DAHTLKQILDEFY-HANVELS 172 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +A +IS+ + R+YL V L + +G GRP YR Sbjct: 173 VSAIAESFSISKSTARRYLDKGVEQGELEAFLAHGKVGRPTRIYR 217 >UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax=Streptomyces RepID=B4VFP7_9ACTO Length = 238 Score = 203 bits (517), Expect = 5e-51, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 4/221 (1%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 VA +N YV ++PGF+ A + +A E++ + P+DLILLD Y+ ENGLDL+ L Sbjct: 2 RVARINAAYVEKVPGFEVAARAHSAAEALELLSDR--PVDLILLDHYLPDENGLDLVRHL 59 Query: 72 HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQ 131 +DVI++++A D AT++ ++ G + YL+KPF L + + +LE Sbjct: 60 RRRGDLTDVIMVTAARDLATVQAAMRLGALQYLVKPFTFGALRSRLEAYGSLRHSLESGG 119 Query: 132 YYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNIS 191 +QAE+D++ G+ ++ P LPKG +P T + Q + + D ST ++A+ IS Sbjct: 120 EAEQAEVDRIF-GTLASAGTPNALPKGHSPTTAELVRQVLRS-ADGPLSTQQIADLAGIS 177 Query: 192 RVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYS 232 R + ++YL L + ++ YG TGRP +RY + Sbjct: 178 RQTAQRYLKLLDRTGRVTLALRYGETGRPEHRYAWRPSDRP 218 >UniRef50_Q03TV3 Response regulator of citrate/malate metabolism n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03TV3_LACBA Length = 238 Score = 202 bits (515), Expect = 8e-51, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 133/241 (55%), Gaps = 8/241 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQC--CGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 + +LII+DD MV +N R++ +IP Q + A ++ LILLD+Y+ Sbjct: 1 MKILIIEDDPMVRLINHRFLERIPQLQAATIVECPSAVAALARPDLAEYT--LILLDMYL 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + +G + L L + VI++++A D T+K++++YGV+D+LIKPF RF++A+ Sbjct: 59 PQLSGTEFLAELLGRQLHPQVIMMTAANDQQTLKEAVNYGVLDFLIKPFTFDRFQQAMAK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSS--SNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 + + +A++ Q +LD L G++ + LPKGLT +L+ + + A Sbjct: 119 FTR-LLAVDDKHTVSQTDLDSLFLGATVPVSTTTTAELPKGLTKLSLQRIVTAL-ATLKP 176 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 FS ++A++ +SRVS +KY+ +LV L ++I Y +GRP+ +++ L++ Y Sbjct: 177 GFSNQDVADQTGLSRVSTKKYVDFLVAMGYLTSAIVYQSSGRPLTTFQVVPTSERLIQPY 236 Query: 238 C 238 Sbjct: 237 L 237 >UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Corynebacterineae RepID=A1UKS8_MYCSK Length = 233 Score = 201 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 6/230 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNS---DTPIDLILLDIY 58 I+VLI++DD ++AE ++ Y++++ GF A T A + + PIDL+LLD+ Sbjct: 6 ISVLIVEDDPLIAEAHQTYLSRLTGFATAAVAHTARDAMRAASEAATGEHPIDLVLLDLG 65 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + G+ L L R D+I I+S D ++ ++ +G + YL+KPF + F + L Sbjct: 66 LPDATGISLASALSGLRPAPDIIAITSERDLEMVRAAVSHGALAYLLKPFTFAAFRDRLE 125 Query: 119 GWRQKKMALEKH-QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 +R+ + AL Q E+D+ + D PKG P T + + + D Sbjct: 126 RYRRYRDALPAGIDAASQTEVDRAL-AELRGSADRATAPKGTAPGTNDEIARAVRDSAD- 183 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 + D++A++V +SRV+ +YL L + + YG GRP RY+ + Sbjct: 184 GLTADQVASQVGVSRVTAWRYLERLADDGTVTRLTDYGRAGRPKTRYQWR 233 >UniRef50_A4FB60 Two-component system response regulator n=4 Tax=Actinomycetales RepID=A4FB60_SACEN Length = 222 Score = 201 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 119/225 (52%), Gaps = 11/225 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI V ++DDD VA+++ + ++P F+ G A + E+A+E++ DL+LLD Y+ Sbjct: 1 MIRVAVVDDDFRVAQVHAEFTERVPDFKVVGVAHSAEQARELVDTR--NPDLVLLDNYLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+ LL L D I++++A D A+++ +L G ++YL+KPF A + LT + Sbjct: 59 DRSGIALLAEL-----DVDAIMLTAATDPASVRAALAAGALNYLVKPFTAEQLGSRLTAY 113 Query: 121 RQKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + L DQ E+D+ + ++ PKG +P T + + + + Sbjct: 114 ARYRGRLPVTGGAVDQDEIDRAMRLLHEGDRPAA--PKGQSPLTSQLVLDAL-QRGESAR 170 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 S E+A E+ I+R + ++YL L ++ YG +GRP ++Y Sbjct: 171 SAAEIAEELGIARATAQRYLAALAQDGKARMTLRYGASGRPEHQY 215 >UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus HB8 RepID=Q53VZ6_THET8 Length = 217 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 19/224 (8%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 LI++DD VA L+R ++ + G + G A TL +A + + DL+LLD+Y+ +G Sbjct: 12 LIVEDDRRVAALHRAFLEE-EGLRVGGIAGTLREAWAFL---EENPDLVLLDLYLPDGHG 67 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 L+LLP L +VI++A D T++ +L G +DYL+KPF SR EAL +R + Sbjct: 68 LELLPALEG----VYTVVITAARDVPTVERALLGGAMDYLVKPFGRSRLREALARFRAFQ 123 Query: 125 MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDEL 184 L+ + QA++D+L+ + PKGL P TL + + + +E+ Sbjct: 124 N-LKAKKEVSQADVDRLLGRRQA--------PKGLDPLTLGRVLALLQG--GKPLTAEEV 172 Query: 185 ANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 A + +SRV+ +YL L + YG TGRP YR++ Sbjct: 173 AEALGLSRVTAWRYLEALRREGRVRAEPRYGGTGRPSRAYRLEP 216 >UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacillaceae RepID=B1HPQ0_LYSSC Length = 273 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 108/220 (49%), Gaps = 13/220 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 INVL+I+DD MV E+NR+++ QI GF G AS + + I +L+ +DI+M + Sbjct: 4 INVLLIEDDPMVREVNRQFIEQIKGFSLVGYASNGIEGIQKI--KQLTPELVFIDIFMPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 ++G+ L + DVI +++A D T++ LH GV DY++KPF R E+ L +R Sbjct: 62 QDGIITLGKIREEHLPVDVIAVTAANDMPTVQRILHLGVYDYIMKPFTFERIEQTLKNYR 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQ----------DPRRLPKGLTPQTLRTLCQWI 171 + + Q Q ++D L+ + LPKG TL + +I Sbjct: 122 SYRKKISGMQDLTQHDVDHLMQQRLPEQVVITTAGTEAITIEELPKGFNRATLDKVFAYI 181 Query: 172 DAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTS 211 S +E++ + +RV+ R+YL +L + + Sbjct: 182 -QTSGGAVSAEEVSTYIGTARVTARRYLDFLEKPKSIKSR 220 >UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ELH7_OCEIH Length = 222 Score = 200 bits (510), Expect = 3e-50, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +NVL+ +DD VA+++ +Y+ + Q A+T + + + DL+LLD+Y+ Sbjct: 1 MNVLVAEDDYRVADIHCQYLEKFQDIQYIERAATAYETLAKL--KENKFDLLLLDVYLPD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 E G++++ +I+I++A D +K + GV+DYLIKP R +A+ Sbjct: 59 ELGINMIETYKQEHAALQIILITAATDIEMLKKAYLSGVIDYLIKPIALDRLADAINKAV 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + + Q DQL + + PKG+ TL+ + + + Q + Sbjct: 119 KNHQFIRSQGEFTQQLADQLFQNQQ-EIMEKQEYPKGIDELTLKKVNEVL-QKQSSGMTA 176 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 D++ ++ +SR + R+YL +L++ + YG+ GRP +Y Sbjct: 177 DQVGKDIGVSRTTARRYLEYLISVGKAKAELEYGIVGRPERKY 219 >UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech586 RepID=D2BTF7_DICD5 Length = 215 Score = 200 bits (510), Expect = 3e-50, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 106/215 (49%), Gaps = 4/215 (1%) Query: 13 VAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVLH 72 +A ++ + P F G+A TL A+ + + DL++LD Y+ G+D++ L Sbjct: 1 MAFFIESFIRKHPEFLLLGSADTLADAR--LAIAAQKPDLVMLDNYLPDGTGIDMMKHLR 58 Query: 73 NARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQY 132 + + DVI I++A D TIK ++ +G DYL+KPF R EEAL + + + + Sbjct: 59 ATQPEVDVIFITAANDIETIKAAIRHGASDYLVKPFILERLEEALKNYLMFNRKVAQKSH 118 Query: 133 YDQAELDQLIHGSSSNEQDPR-RLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNIS 191 Q E+D++I S + PKG+ TL + + D L++ + IS Sbjct: 119 LQQDEIDRVIRQSIPHHVPAGFIYPKGIDELTLNQVRAAFSGEHTQ-HTADSLSDMIGIS 177 Query: 192 RVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + + R+YL + N +L I +G GRP YR+ Sbjct: 178 KSTARRYLEYCKNIKLLEAHIQHGTVGRPQRFYRL 212 >UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6T7_VIBME Length = 228 Score = 200 bits (510), Expect = 3e-50, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 111/225 (49%), Gaps = 5/225 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I+++I++DD + + + F G A + + A+ II LILLD Y+ Sbjct: 4 IDIVIVEDDVNITNIYLDIIQGFSRFTVVGIAESQKIARTIIQA--YQPQLILLDNYLPD 61 Query: 62 ENGLDLLPVL--HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 G+DL + + K DV++I+++ D T+++++ G DYL+KP RF++ L Sbjct: 62 GLGIDLYRDILAQKKKRKQDVVLITASDDVNTVQEAMQLGCFDYLLKPISFDRFQQTLQR 121 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + A++ + +Q +D+L +Q LPKG+ TL + + + + +F Sbjct: 122 YLDLNNAMKAYDNLNQKYIDELF-NIQHRKQQVSLLPKGIEQITLDKIIRLLSLNNGDKF 180 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 + ++++ +S+ + R+YL + ++ + YG GRP Y Sbjct: 181 TVEKVSLHTGVSKTTARRYLEYCATHGLIISENEYGKVGRPERVY 225 >UniRef50_C5CAK7 Response regulator of citrate/malate metabolism n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAK7_MICLC Length = 238 Score = 200 bits (509), Expect = 4e-50, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 8/231 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNS-----DTPIDLILLD 56 VL+++D+ + AE ++ ++PGF+ A +L A+++ P D++LLD Sbjct: 6 YRVLVVEDEQLTAEAYVAHLDRLPGFEVSAVAGSLLAARQVAAAGLHTDGRFPFDVVLLD 65 Query: 57 IYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 + + +GLD L L A V+ +++A D ++ ++ YGV YL+KPF F + Sbjct: 66 MNLPDGHGLDFLHQLRAAGFHGGVLALTAATDLPVVRRAVAYGVTQYLVKPFGFDEFADR 125 Query: 117 LTGWRQKKMALEKHQYYD-QAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 L G+R L + Q ++D + S + LPKGLT TLR + + A Sbjct: 126 LGGFRAASAMLAGDGALEGQEQVDAVFRVSRERRAEA--LPKGLTEGTLREVMDLLGADP 183 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + S E+ + ISRV+ R+YL L + S +G GRP YR Sbjct: 184 ETALSAAEVGERLGISRVTARRYLEHLERIRRVRRSARHGGRGRPEQEYRW 234 >UniRef50_C2IT51 Response regulator of citrate/malate metabolism n=13 Tax=Vibrionaceae RepID=C2IT51_VIBCH Length = 227 Score = 199 bits (508), Expect = 5e-50, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 111/225 (49%), Gaps = 9/225 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M+NV+I++DD + L+ ++V Q F STL A++++ + DL+++D Y+ Sbjct: 3 MLNVIIVEDDPQIGGLHAQFVQQDERFNVLAMVSTLADAQKMVEWAK--PDLVIVDNYLP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 G++L+ L + + K I++++A D T + + +G DY++KP R E+L + Sbjct: 61 DGLGIELVRALIDVQPKPACILVTAACDLETAQQAYRFGAFDYVVKPVDYRRLAESLQRF 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + + Q +LD+L H S Q + TL + + +H + E + Sbjct: 121 YRLRHPEPFSKAVRQQDLDELFHPQRSKPQTT------IDDFTLEQMLEHF-SHTNVEHT 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 D +A + IS+ + R+YL V + + +G GRP YR Sbjct: 174 ADSMALRLGISKSTARRYLDSAVEAGEITAYLEHGKVGRPTRVYR 218 >UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococcus casseliflavus RepID=C9AYP4_ENTCA Length = 227 Score = 199 bits (506), Expect = 8e-50, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 129/229 (56%), Gaps = 6/229 (2%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 N+LI++DD MV ++R Y+ ++ F+ + T+E+A+E++ I+L+LLDI+++ Sbjct: 4 NILIVEDDPMVQFIHRSYLERLAVFERIFSVETVEEAQEML--QKETIELLLLDIHLKDG 61 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 NGL+LL L + DVI+I++A + I SLH G++DYLIKPF RF +++ ++Q Sbjct: 62 NGLELLQTLREQQQAVDVIMITAADETRLISQSLHLGMLDYLIKPFSFERFAQSIQVFQQ 121 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 ++ +L KH Q ++D L+ G+ + L KGLT TL+ + + I F+ Sbjct: 122 RRESL-KHPRIAQQQIDLLLQGNQKSPWI--ELEKGLTEDTLQLIQETIRT-IKQPFTVQ 177 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHY 231 ELA +S VS RKY+ L + + Y GRP +Y + + Sbjct: 178 ELAQACALSHVSVRKYVAHLEKTKAIRSENVYTKIGRPYKQYFLITDKE 226 >UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S8J9_9ACTO Length = 228 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL+++++A A+L +V ++ F AST A + +DL+LL +++ Sbjct: 1 MRVLVVENEATTAQLLVGHVQRLRDFAVTEQASTGADALRRLAPGH--VDLVLLGVHLPD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 + LDLL L A C V+ +++ D + I+ +L +GVV YL+KPF + E L + Sbjct: 59 MSWLDLLRTLRGAGCTVGVVAVTATHDLSVIRTALAFGVVHYLLKPFTFTSVREQLEKYE 118 Query: 122 QKKMALEKHQYYD-QAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD-YEF 179 + + Q E+DQL+ + D RLPKG++ ++L+ + + Sbjct: 119 AYRSLRNVGELVLVQQEVDQLLGVL--RDADENRLPKGISRESLQAVTAALKRCSGLGGV 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 S E+A + ISRV+ R+YL +LV+ Y GRP Y + Sbjct: 177 SAAEVARALGISRVTTRRYLEFLVDKGAAHRRARYRGPGRPELEYVWLS 225 >UniRef50_C4X351 Two-component response regulator for citrate n=21 Tax=Bacteria RepID=C4X351_KLEPN Length = 233 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 3/222 (1%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 VLII+D++ +A L+ V + P + G A++L +A++++ TP L+LLD Y+ Sbjct: 9 VLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLL--HATPPQLVLLDNYLPDGK 66 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 G+ L+ A + VI I++A+D T ++ G DY++KP R ++L + Q Sbjct: 67 GVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQF 126 Query: 124 KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 + + DQ +D L + N + KG+ +TL + + + FS DE Sbjct: 127 YDQQREWKIVDQQNVDSLYQLQAKNYR-VDSGSKGIEEKTLALVQGLFSDREAHCFSVDE 185 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 + + +S+ + R+YL V L + YG G P YR Sbjct: 186 VVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYR 227 >UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42F37 Length = 231 Score = 197 bits (501), Expect = 3e-49, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 137/232 (59%), Gaps = 8/232 (3%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA+ N +V +IP F+ G A +E+ + ++ +DLILLD+YM ENGLDLL L Sbjct: 1 MVAKFNAIFVERIPEFKLVGVARGIEEGWTYL--NEEAVDLILLDVYMTNENGLDLLMEL 58 Query: 72 HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQ 131 DVIV+SSA D +I+ +L +G VDYLIKPF+ RF++AL ++Q + K + Sbjct: 59 RRENHPVDVIVVSSANDRGSIQTALRFGAVDYLIKPFEFDRFQDALLRYKQTFQDM-KKE 117 Query: 132 YYDQAELDQLI----HGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANE 187 Q E+D+L + + + + LPKG+T +T + + I+ H D+ FST++L + Sbjct: 118 AIQQEEVDRLFLTKGNSNKNVPKADLPLPKGITKETYIRVLREINKHSDW-FSTNDLVDA 176 Query: 188 VNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 ISRVS RKYL +L N IL + Y TGRP+++Y++ + Y + + Sbjct: 177 TGISRVSLRKYLQYLTNSDILLFDVDYQRTGRPLHQYKLTNQGYDYIVSVLK 228 >UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WFB7_FUSMR Length = 220 Score = 196 bits (500), Expect = 4e-49, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLI++DD MVA +N Y++ + G T + + + +DLI+LD+++ Sbjct: 1 MKNVLIVEDDPMVAMINEEYLSSFQNIKVLGRTFTEKDTLDFLTTHK--VDLIILDVFLG 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +ENG+++L + +DVI+I+SA IK + +G +DYLIKPF R + ++ Sbjct: 59 EENGIEILKKIRTLGYTTDVIMITSANGGEDIKKAFSFGCIDYLIKPFDFERLKISIDKI 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L K + Q +D + SS LPKGL +TL + Q I + EF Sbjct: 119 FTRDEILNKSK-VKQDSIDNIHSTPSS-----LNLPKGLNSKTLEKVTQIISNLPNEEFG 172 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 ++ +IS V+ +KYL +L N + + +YG GRP+Y Y+ Sbjct: 173 IKDICQITDISNVTIKKYLDYLENIKYITSFTNYGNIGRPLYLYK 217 >UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WAT4_BACSK Length = 247 Score = 196 bits (500), Expect = 4e-49, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 129/234 (55%), Gaps = 7/234 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I V +I+DD VA +R +++++ GF+ G A TLE+ +I DL+LLD+++ + Sbjct: 17 IKVAVIEDDIDVARFHRLFLSKVAGFELIGEAHTLEQGVHLIQTQK--PDLLLLDVFVGQ 74 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 ENGLD+L + +DVI+I+SA DA T++ YGVVDYLIKPF +RF+EAL +R Sbjct: 75 ENGLDVLKRIRAEDTNTDVILITSANDAKTVQTGSRYGVVDYLIKPFSFARFQEALNRYR 134 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 L+ + + Q ++D+L+H ++ LPKG+ +T + + D + Sbjct: 135 A--SQLDANASFTQQDVDRLLHK--GGQRKVYALPKGIAKETAIRVLSCLIE-ADDSLAA 189 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLK 235 EL IS VS RKY+ + ++ + Y +GRP+ Y+ E LK Sbjct: 190 AELEARTEISHVSLRKYMRFFEEEQLVEKELVYQSSGRPLQTYKASPEAALFLK 243 >UniRef50_C9Z825 Putative two component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z825_STRSW Length = 231 Score = 196 bits (499), Expect = 5e-49, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 8/226 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +LI+DDD +V R V +I GF+ A T +A +L+LLD+++ Sbjct: 8 ITLLIVDDDPVVTTALRAQVNRISGFRVVAIAHTGREALA--ATRRFAPNLVLLDLHLPD 65 Query: 62 ENGLDLLPVLHN-ARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 GLD+ L +DVIVIS + ++ ++ ++ G + YLIKP + E+ L + Sbjct: 66 IPGLDVAHQLRRPDYPPTDVIVISGSRESTAVRAAMQRGALHYLIKPARTGTVEQTLLRY 125 Query: 121 RQKKMALEKHQYY-DQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 L +Q +D++ D P G++P T + + + A + Sbjct: 126 AAASAHLSAGASMVEQRAIDRVFRSL---HLDAVVRPTGISPATEQVVLDALAA-AGRDL 181 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 S E A V ISR + R+YL L + + S+ YG++GRP +RYR Sbjct: 182 SAHETAEAVGISRATARRYLEHLADRGEVVASLRYGLSGRPQHRYR 227 >UniRef50_Q0RQX5 C4-dicarboxylate two-component system response regulator n=13 Tax=Actinomycetales RepID=Q0RQX5_FRAAA Length = 233 Score = 194 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 4/230 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI+D DA +AE V QIPGF G + +A E + L+LLD+ + Sbjct: 6 IRTLIVDGDARLAEQEGGIVDQIPGFTVVGIVHSGAEALEFVSRGH--PQLVLLDLLLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G+++ L + D+I ++SA+D AT++ +L YGV YL+KP A+ + L + Sbjct: 64 TTGVEVCRTLRSRGAALDIIAVTSASDLATVRAALSYGVAQYLVKPLSAATLRDRLHRFA 123 Query: 122 QKKMALEKH--QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 L + Q E+D+ + PKG++ TL ++ + A Sbjct: 124 AAHRQLATATPHHLSQGEVDRALAALRPAVAPIADQPKGVSATTLDSVVAQLRARAGRPA 183 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 S +++A + +SR + R+YL L + S YG GRP YR Q Sbjct: 184 SAEDIAAAIGVSRATARRYLEHLAVHRLAIRSHRYGRCGRPGNLYRWQGA 233 >UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q894L8_CLOTE Length = 233 Score = 194 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 131/236 (55%), Gaps = 12/236 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI V+II+DD MV E+N R++ +I GF+ C AS L++A + I + L+ + Y+ Sbjct: 1 MIKVMIIEDDPMVMEINYRFLNKIEGFKVCKKASNLKEAYDYILKHKLDLILLDI--YLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +ENGL+ L L D I+I++ ++K++L YG VDY+IKPF +RFEE + Sbjct: 59 RENGLEFLKKLRKDEIGLDAIIITADRSKDSLKEALMYGAVDYIIKPFTFNRFEETFKNY 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSS---------SNEQDPRRLPKGLTPQTLRTLCQWI 171 R K + LE +Q +D+LI + ++ L KGL T + + I Sbjct: 119 RGKYIKLENLDQLEQNTVDKLISNTRCGDCNKKNTLEPREYTHLIKGLNKFTYEKIWEHI 178 Query: 172 DAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 Q+Y F+ +E+A E+ ++R++ RKYL ++ + L + YG GRP + Y+++ Sbjct: 179 HKRQNY-FTAEEIAKEIGMARITIRKYLEYMCIENKLGFKLEYGKVGRPRHEYKVK 233 >UniRef50_Q8NU70 Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=2 Tax=Corynebacterium glutamicum RepID=Q8NU70_CORGL Length = 218 Score = 193 bits (492), Expect = 4e-48, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 14/223 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL+IDDD VA ++ V PGF GTA TL +AK +I DL+L+D+Y+ Sbjct: 5 LKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLIAT--FSPDLLLVDVYLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+DL+ D V+S+A D T++ ++ G + YL+KPF R E L + Sbjct: 63 GDGIDLVGT-----SNIDAFVLSAADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDRYV 117 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + L Q Q ++DQ + Q P + + T Q L +DA + E S Sbjct: 118 RYRHVLSGTQGLSQDKIDQA-TAILNGTQAPVTVSRSATEQLL------LDALEGQELSA 170 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 E + +SR + ++ L + + ++ + YG +GRP + Y Sbjct: 171 TEASEAAGVSRATAQRRLAAMASQGVIQVRLRYGQSGRPEHLY 213 >UniRef50_UPI000050FA19 putative two-component response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FA19 Length = 232 Score = 192 bits (488), Expect = 9e-48, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 12/233 (5%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPID-----LILLDIYM 59 L+++D+A+ A + +Y+ +I G+ G A +A + +D L+LLD+ + Sbjct: 2 LVVEDEAVAARAHAKYIDRIDGYHLAGVAKNATQAMAALTGKIYGLDADCINLVLLDMNL 61 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL + + R D+I +++A D ++++L YGV Y+IKPF F+ L Sbjct: 62 PDGHGLQVCRAIRGHRVDVDIIAVTAARDMQIVQEALSYGVAQYIIKPFTFPVFKSKLEA 121 Query: 120 WRQKKMAL---EKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + + +L Q ++D I ++ KG+ + + Sbjct: 122 YSSYRNSLGGDSTEGEVTQTDVDTAIAALRTHTVTA--TAKGVPDAVQAEVKSVLGDKPG 179 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 S E+A + +SRV+ R+YL + + +L YG GRPV Y + A+ Sbjct: 180 Q--SAAEVAEGLGVSRVTARRYLEAMADAGMLNRRPRYGAAGRPVLEYTVVAD 230 >UniRef50_C8NS01 Two component system response regulator n=6 Tax=Actinomycetales RepID=C8NS01_COREF Length = 218 Score = 190 bits (484), Expect = 3e-47, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 14/223 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VL++DDD VA+L+ V PGF GTA T+ +A+ +F ++ P+DL+L DIY+ Sbjct: 5 LQVLVVDDDFRVADLHAAAVEAAPGFTVVGTARTVAEAR--VFLAEHPVDLLLADIYLPD 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ L D ++S+A D T++ +L G + YL+KPF + L + Sbjct: 63 GDGITLARA-----SDVDAFILSAADDVPTVRRALRAGALAYLVKPFPQRVLIDRLDRYA 117 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + L Q Q ++DQ + + Q P + + T Q L +DA D E S Sbjct: 118 RYRHVLSGSQGLSQEKVDQAL-AILNGAQAPTPVSRSATEQLL------LDALGDGELSA 170 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 E A +SR + ++ L + + ++ + YG +GRP + Y Sbjct: 171 SEAAELAGVSRATAQRRLAAMASSGLVQVRLRYGQSGRPEHLY 213 >UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillus thuringiensis RepID=C3DC45_BACTU Length = 231 Score = 190 bits (484), Expect = 3e-47, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 10/233 (4%) Query: 12 MVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVL 71 MVA +N++++ + G + + + + II + DLILLD+Y+ E G+D L + Sbjct: 1 MVAMINQQFIGRFKGLRIIASVGNIGELWNII--NKNVPDLILLDVYLPGETGIDFLQTV 58 Query: 72 HNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQ 131 + +I+I++A D TIK SL YGV+D+LIKPF RFE A+ + Q K + Sbjct: 59 RQKQLSIPIIMITAAHDIPTIKKSLEYGVIDFLIKPFSYERFELAIENFLQYHSLTTKLE 118 Query: 132 YYDQAELDQLIHGSSSN-------EQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDEL 184 DQ LDQ++ ++ ++ KGL+ TL+ + I + Y FST+++ Sbjct: 119 ETDQDTLDQILIKERVPSLVNPACKELSSKISKGLSKITLKKILHVIVKQEGY-FSTEDI 177 Query: 185 ANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 +V++SRVS +KYL++L L + Y GRP+ + + E L+ + Sbjct: 178 TKKVDLSRVSTKKYLLFLNEIGYLSEELKYLAVGRPITVFHVVPEKEHLITSF 230 >UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammaproteobacteria RepID=A4VGG4_PSEU5 Length = 241 Score = 190 bits (483), Expect = 4e-47, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 130/226 (57%), Gaps = 4/226 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLI++DD MV LN Y+A++ G + G +++ A E++ + + L+ + + Sbjct: 5 LRVLIVEDDPMVMRLNVDYLARLDGIELVGQCASVPAALELLADETVDLLLLDVYLR--N 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL++L L +D ++I++A++ T++ + GV DYL+KPF RF +A+ R Sbjct: 63 RSGLEVLRYLRAEDRNTDAVLITAASEIETVRAAQRLGVRDYLVKPFSFERFRDAVESCR 122 Query: 122 QKKMALEK-HQYYDQAELDQLIHGSSSNE-QDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + AL + + Q ++D+L ++ + + P LPKGLTP +L + Q I A ++ F Sbjct: 123 RARDALSRLPEQLGQGDIDRLFSQPAAADVRRPGDLPKGLTPASLAQVAQAILALEEDSF 182 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 +++ L +SRVS RKYL L + +L S HYG GRP +RYR Sbjct: 183 TSENLLTATGMSRVSVRKYLKHLTDAQLLEESFHYGQIGRPSFRYR 228 >UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYA0_9BACL Length = 226 Score = 190 bits (483), Expect = 4e-47, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 133/231 (57%), Gaps = 9/231 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLII+DD MVA +++ Y + +++E A+E + N+D +DLI+LD Y+ Sbjct: 1 MRVLIIEDDPMVAMIHKEYFKKKELTDDLNHVTSIEDAREYLANND--VDLIVLDNYLID 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 G++ LP L +I+I++A D T++ +L GVVDYL+KPF RF +A+ + Sbjct: 59 GQGIEYLPELKGY----PIIMITAANDVQTVEAALSNGVVDYLVKPFTYERFAQAIDKVQ 114 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 L K + +Q +D+ + S E+D LPKGL+ TL+ + + I H + F+T Sbjct: 115 DYVKLLSKEK-INQDLIDEYL-NSGRIEEDEDNLPKGLSRITLKKVLEAIKQH-NSGFTT 171 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYS 232 ++A++++ISR++ RKYL LVN +IL Y +GRPV + + +E Sbjct: 172 QQIADKLDISRITIRKYLNHLVNINILSEDAEYYTSGRPVSVFTVVSESRL 222 >UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinococcus deserti VCD115 RepID=C1CYN9_DEIDV Length = 219 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 12/224 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I LI++DD +A+L+RR + + GF+ G+A TL A+ + + DL+LLD+++ Sbjct: 6 IRTLIVEDDPQIADLHRRLLERAGGFEVLGSAETLRIARAM--SRTLRPDLLLLDVHLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 GLDLL L + D +++++A+DA++++ +L +G DYL+KP RF AL R Sbjct: 64 GRGLDLLRELRLEGAQVDAVLVTAASDASSVQSALLHGAADYLVKPATPERFALALERVR 123 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + AL + Q LD L GL +TLR + + + Sbjct: 124 E-RAALWAQRDVRQGHLDALFT-------PLADDASGLDAETLRRVRAALRD--GAAHTA 173 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 E+ + +SRV+ +YL +L + + GRP RYR Sbjct: 174 QEVGQALGLSRVTAWRYLEYLTAQGEVSAAADARSVGRPAKRYR 217 >UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacillales RepID=B9DS01_STRU0 Length = 227 Score = 187 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 9/231 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +NVLII+DD MV ++R Y+ +I FQ ++ ++ AKE + I LILLDI+++ Sbjct: 1 MNVLIIEDDPMVDFIHRNYLEKINHFQNILSSDSISDAKEKLV--QFSIQLILLDIHIKD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGL+LL + +VI+IS+A D IK H+G++DYLIKPF RFEE++ + Sbjct: 59 GNGLNLLEYIRANHINCEVIIISAANDGNIIKTGFHFGIIDYLIKPFTFDRFEESIRRFF 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRR-----LPKGLTPQTLRTLCQWIDAHQD 176 + L Q+ +D L S+++Q L KGL+ T + + I Sbjct: 119 DHQKQLN-QMVIKQSAIDFLKSQQSNDKQAITNKTNLLLEKGLSQDTYQLIIDAI-QRLS 176 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 F+ +L E +S VS RKY+ ++ + L + Y GRP Y+IQ Sbjct: 177 KPFTIQDLTEETCLSHVSVRKYIAYMEENNQLVSEQIYTKVGRPYKVYQIQ 227 >UniRef50_UPI00017896CE two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017896CE Length = 261 Score = 187 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 97/238 (40%), Gaps = 20/238 (8%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ L++DD+A + + + + G + G A + +A E+ DLIL DI M Sbjct: 1 MLKALLVDDEAPILNNLSKVLPWEEMGMKVVGLARSGMEALEV--ADQYNPDLILCDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL + + ++++ +++ + ++++ GV DY+ KP E + Sbjct: 59 PVMDGLTFITKIREKGSRAEIFLLTGYQEFEYAREAIKLGVKDYISKPIHYGELEMKIRE 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++ + Y + + N + ++ P+ L L +I+ H + Sbjct: 119 IGEEIRKKRAKEKYYNTVS---LIDEAPNPEAVKKTPEQLVSSALE----YINTHMGQDL 171 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 +EL+ + IS Y L H+ T + Y + R R++A + L+ Sbjct: 172 GIEELSEHLGIS----SSYFCLLFKNHVGLTFVEY------LTRQRMEAAKFLLVNSD 219 >UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteobacteria RepID=A1REF6_SHESW Length = 225 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 114/222 (51%), Gaps = 4/222 (1%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 +II+DD + + Q P F+ + T + A + L+ +DI + +G Sbjct: 1 MIIEDDPKASYALESIIHQHPDFEVVVVSETYQDAL--MHYDLYKPQLVFVDITLPDGSG 58 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 ++++ L + I+ ++ +A T++ + GV DYL+KP + SR +AL ++ + Sbjct: 59 INVIKQLRSQGANCYFIMTTAEREATTVEQVVQLGVSDYLVKPLRMSRVRQALDDYKLYR 118 Query: 125 MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDEL 184 L H+ DQ +D ++ ++ RR PKG+ TL TL + Q EFS D++ Sbjct: 119 QKLACHETMDQCVIDHILGKRTNLPM--RRTPKGIDANTLDTLKDILRKEQLTEFSGDDI 176 Query: 185 ANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 ++ +N+SR++ R+YL +L + ++ ++Y GRP Y++ Sbjct: 177 SDRMNVSRITIRRYLEYLESEGVIKMVLNYKTGGRPSRVYQL 218 >UniRef50_UPI0001C358FB two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C358FB Length = 273 Score = 186 bits (472), Expect = 7e-46, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 90/232 (38%), Gaps = 13/232 (5%) Query: 3 NVLIIDDDAMVAELNRRYVAQ-IPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +++DD+ V L + G + G A E+A ++ DL++ DI M Sbjct: 5 KAVLVDDEENVRYLLADLLESFHLGIEVTGQAGDGEEALKLC--RSLKPDLVISDIKMPG 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ +L + + + +S+ D K ++ G Y++KP + + L + Sbjct: 63 LDGIHMLEAVKKISPEIICVFVSAYTDFEYAKAAIANGARGYILKPVEPEEMYQLLKTVK 122 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + M +KH+ Q ++ + + D + + +R +++ H + S Sbjct: 123 AEWMQSQKHRKKVQLMETEIRKLKAEHLTDDMPVDSNGCSRVIRKALNYMEDHYHEDISL 182 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 + ++ V ++ + Y L + + Y + YR++ L Sbjct: 183 ESISEVVFLN----KNYFSELFKKETGKSFVQY------LTEYRLEKAKLLL 224 >UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B832_THEAS Length = 225 Score = 186 bits (472), Expect = 7e-46, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 6/224 (2%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 LI +DD MV+ + R V + F G A +A E I +DL+LLD+ M + Sbjct: 5 RTLITEDDPMVSFIIGRLVNSLGDFLLVGQAQNGREALEQI--RAHKVDLVLLDLSMPEV 62 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +G +++ + N SDVI+I+S+ A ++L G DY++KPF R +L ++ Sbjct: 63 DGKEVMLTIRNEDLDSDVIIITSSYRKADAVEALRLGAWDYIVKPFSYDRLRVSLDSYKD 122 Query: 123 KKMALEK-HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 Q +LD++ + S + T + + + ++ S Sbjct: 123 AFRYRASLPAELAQEQLDRVFYPESRLNLYSTSGIQRGD--TAQRIMDVLSQ-EERPLSA 179 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 E+A+++ ISR++ RKY LV+ L HY GRP+ +Y+ Sbjct: 180 GEIADKIGISRITVRKYCEALVSTGRLIAQNHYQPKGRPIKKYQ 223 >UniRef50_UPI0001788B4F two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788B4F Length = 270 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 10/223 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL+++D+ V E R + + GF+ G A +A E+I P DL+L DI M Sbjct: 1 MWKVLLVEDEVFVRESVREIIAWEELGFKVAGEAGNGAEALEMI--RSNPPDLVLTDIVM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIK-PFQASRFEEALT 118 + +G++LL S ++++ ++ ++ ++ YG +Y++K + E L Sbjct: 59 PEMDGVELLRRTREEGYASKFVMLTCMSEFEYVRQAMEYGASNYILKLSMSVNTLRETLH 118 Query: 119 GWRQKKMALEKHQYYDQAE-LDQLIHGSSSNEQDPRRLPKGLTPQ-TLRTLCQWIDAHQD 176 + Q + + + P+ +T ++ + Q+I H + Sbjct: 119 KMNAELTKSNPSPNPSQPVSIPVASTETVPPQPAHHASPEEITTHPEVQKILQYIHEHYE 178 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGR 219 + + ++ V + Y+ L T IHY R Sbjct: 179 QDITVKSMSGYVMMGE----NYVSALFKKKTGRTLIHYLHQVR 217 >UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF749E Length = 221 Score = 182 bits (464), Expect = 6e-45, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 13/223 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 ++VL++DDD VA ++ VA +PGF GTA+T+ A+E +DL L+D+Y+ Sbjct: 6 LSVLVVDDDFRVANMHAGVVAAMPGFTVTGTANTVAAAREA-----PAVDLALVDVYLPD 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+D + L + D +++++A +A T++ ++ G + YL+KPF + L+G+ Sbjct: 61 GSGIDFVRELRS-----DSMILTAATEAETVRAAMAAGALSYLVKPFPTTELAARLSGYA 115 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + L ++D + + +P T + + Q + Q S Sbjct: 116 RYRKIL-AGANLSARDVDAALDALRPRLAPAQSSATAASP-TKQLVLQALKTSQ-TPMSA 172 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 E+A + ISR + ++YL + + + + YG TGRP + Sbjct: 173 AEVAAAIGISRATAQRYLAAMASSGDVSVGLRYGATGRPEQEF 215 >UniRef50_UPI0001C32222 response regulator receiver and unknown domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32222 Length = 230 Score = 182 bits (463), Expect = 7e-45, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 9/225 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 VLI +DD VA L+R + + P F+ G A E+ + DL+LLD+ ++ Sbjct: 4 WRVLIAEDDPDVARLHRLLIERHPAFKAIGVAEAGEQVLRDVATQ--RPDLVLLDLELRG 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL++L + +VI +++A D ++ + G+VDYL+KPF R AL + Sbjct: 62 MDGLEVLSWMRRLAYDVEVIAVTAADDREIVRRMMRLGIVDYLVKPFTPERMRVALARFS 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ L QA + + R LP+GL TL L Q + AH ST Sbjct: 122 ERVAGL-PGSTVTQAA----VDAALGAADARRLLPRGLQADTLDRLRQEL-AHAGEWLST 175 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIH-YGVTGRPVYRYR 225 EL V+++ V+ R+YL +LV T + YG GRP YR Sbjct: 176 QELGGRVDVAAVTVRRYLEYLVVNQEAVTRLDGYGSPGRPRKLYR 220 >UniRef50_A3CKH3 Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative n=30 Tax=Bacteria RepID=A3CKH3_STRSV Length = 227 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 79/200 (39%), Gaps = 7/200 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VLI DD A++ E + ++ + GT ++ E + D+IL+DI M Sbjct: 1 MIKVLIADDQALIRESLQIILSAHADIEVVGTVGDGKEVLEKL--HRVRPDVILMDIRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+ + +I++++ D I +L YG Y++K EA+ Sbjct: 59 VMDGVLCTKAVKEQYPDVKIIILTTFDDDEFIFSALKYGASGYILKGVSTEELHEAIQTV 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + + ++ + S+ + ++ + + Q + S Sbjct: 119 YRGGAMINPNIATKVFKIFSQMAQSNFAITVTEENIEDMSRTEWKIIQQI-----GFGIS 173 Query: 181 TDELANEVNISRVSCRKYLI 200 E+A ++ +S + R YL Sbjct: 174 NKEIAAKLFLSEGTVRNYLS 193 >UniRef50_C6IWZ0 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWZ0_9BACL Length = 253 Score = 180 bits (458), Expect = 3e-44, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 92/215 (42%), Gaps = 20/215 (9%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M N+LI+DD+A E Y GFQ G A+ ++A +I + +D++L DI M Sbjct: 1 MYNLLIVDDEAETREALSSYFPWNEVGFQVVGQANNGQEALRLIAEGE-RVDIVLTDIKM 59 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G++L L+N R + V+ +S D + +LH+ V++Y++KP + + Sbjct: 60 PVMSGIELAEQLYNHRRQIKVVFLSGYRDFEYAQQALHFRVINYILKPAKYHVLLDVFGK 119 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +++ A + +P +G ++ + +++ A+ Sbjct: 120 IKEELEAEAA-------------AENQDLGPNPSAPGQGGESLIIQKIKEYVKANYKNA- 165 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHY 214 S +E+A V+++ YL + Y Sbjct: 166 SLEEVARLVHMNA----NYLSFFFKQKTGQNFSDY 196 >UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHL9_9FIRM Length = 254 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 89/232 (38%), Gaps = 19/232 (8%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + ++I+DD+ + + + G+Q G A +++++ D+I+ DI M + Sbjct: 1 MKLMIVDDEPKIRNGLLKLLGARDGWQVTGVFEDALSALTALYDNEA--DVIVTDIKMPE 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+L+ + ++++S ++ A + ++ GV YL+KP L G Sbjct: 59 VSGLELIRQIRERNQDIHIVILSGHSNFAYAQKAIELGVTRYLLKPTNPRELVAVLEGIE 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ + E G+ ++ Q+++ H + Sbjct: 119 KELKQGAGDAPDKKQ-------PPQEGEAGSGADGDGVGNLLVQKAIQYVEVHYGGRITL 171 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 +++ E+++S YL L H + Y V YR+ L Sbjct: 172 KDMSEELHLSP----NYLCELFKRHTGKNLMEY------VTEYRMMKARNYL 213 >UniRef50_UPI0001C351CB two component AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C351CB Length = 252 Score = 179 bits (455), Expect = 7e-44, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 91/235 (38%), Gaps = 25/235 (10%) Query: 1 MINVLIIDDDAMVAELNR-RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VL+IDD+ V + G A+ + E DLI+ DI M Sbjct: 1 MLKVLVIDDEVFVRKGIVMETDWASLDCMVAGEAANGLEGLE--ACRKYNPDLIISDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +G+++L +L VI +++ ++ +++L DYL+KPF+ E+A++ Sbjct: 59 PKMDGIEMLKILREEGNDVSVIFLTAYSEFEYARNALKLLAFDYLLKPFEDGELEDAVSR 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ-DYE 178 R K + + + ++ G + ++ +I H D + Sbjct: 119 VRDKLVREREEKER-----------REESKILSPGARTGDKSRYIKEAIAYITEHYNDSD 167 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 S +A + IS +L L +T + Y + R RI+ L Sbjct: 168 LSVGTIAESLGISEG----HLSHLFKKETDYTVMAY------ITRCRIREAMKLL 212 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 179 bits (455), Expect = 7e-44, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 24/241 (9%) Query: 1 MI--NVLIIDDDAMVAELNRRYVAQ-IPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDI 57 M +L++DD+ E +R + + G TA+ ++A I+ + ++L DI Sbjct: 1 MYEKTILVVDDEPRAREGMKRVLEKWASGKHRIITAANGQEALAIL--RQERVHVLLTDI 58 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 M + GL++L + VI+IS+ D + ++ GV++YL+KP + S EA+ Sbjct: 59 RMPEITGLEVLEGMRENEDSPVVIIISAYPDFDYAQKAISLGVLNYLLKPVKKSELFEAV 118 Query: 118 TGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 E+ + Q D+LI+ + Q T + +R Q+ID Sbjct: 119 ERAIHVSEQKERERVMKQLIDDKLINALDRHPQ---------TREPIREAIQFIDQRLKD 169 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 + S ++A V+++ Y L + T Y + R R+Q L+ Sbjct: 170 DISLKDVAEHVHLNPS----YFSTLFKEQMQLTFSEY------LTRRRMQRAKELLMTTD 219 Query: 238 C 238 Sbjct: 220 M 220 >UniRef50_A6TMD1 Response regulator receiver protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TMD1_ALKMQ Length = 253 Score = 179 bits (455), Expect = 7e-44, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 86/239 (35%), Gaps = 24/239 (10%) Query: 1 MINVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DD+ + + ++++ + FQ A ++A E +L L+DI M Sbjct: 1 MFKVLIADDEPKIRKGLKQWIEESSYKFQVVAEAKNGKEALEYTI--KASPELFLVDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGLD + + S V++I+ D ++ + V DYL+KP + F L Sbjct: 59 PMMNGLDFISQMKKISPNSIVVIITGYDDFQYAHKAIKFNVFDYLLKPVSKNEFNNLLRK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAH-QDYE 178 + + +R++ +ID H D + Sbjct: 119 VTETLGNRADEAEV----------------MEVTTEKNAAYSSMIRSVKDYIDDHFDDSQ 162 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 +A + S+ Y+ + + + + Y R +I H++ + Y Sbjct: 163 LDLSHIAQLFDTSKS----YISKRMKQELGKSFVEYLTDIRLEKAKKILENHHARMTMY 217 >UniRef50_B2GLU0 Putative CriR family two-component response regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GLU0_KOCRD Length = 218 Score = 179 bits (454), Expect = 9e-44, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 12/223 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLIIDDD VA L+ YV +PGF+ L + + DL+L+D+Y + Sbjct: 4 LRVLIIDDDFHVAALHVGYVNAVPGFEALPPVHDLRAVAAAV--EEHRPDLMLVDVYFPQ 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GLD+L + D V+S+A++ AT+ + G + YL+KPF+ + L + Sbjct: 62 GSGLDVLRAV-----DVDAFVLSAASERATVAAAFRRGALAYLLKPFEPEVLKAKLRAYA 116 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + L+ Q+ +D+ + ++ P T + E + Sbjct: 117 RYRRQLDAPGPLSQSAIDRARRAMTGSDDAPAGTAASATESAVADAVA-----DGGEVTV 171 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRY 224 ++A V ISR + ++YL +V + + YG GRP +RY Sbjct: 172 MDVARAVGISRATAQRYLSQMVQRGAVQLELRYGSRGRPEHRY 214 >UniRef50_UPI00016C0713 response regulator receiver protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0713 Length = 277 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 93/233 (39%), Gaps = 8/233 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M V+I DD+ ++ + + G A +A E+I + D+++ DI M Sbjct: 1 MFKVVIADDERIIRMGLKSLRWDNYNMEIVGEAKNGLEAIELIDS--LKFDILISDIKMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + GL++ L + +I +S + K++L GV DY++KP + + Sbjct: 59 GKTGLEIAKYLKEIKSNIKIIXLSGYGEFEYAKEALALGVFDYILKPSTPAEILDTAARA 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 R + + K + Y + ++ N + Q ++ + ++I ++ + E + Sbjct: 119 RDELIKESKEKEYVEEMEQKITDYQ--NIVGAKIAINNDKNQDIKKILEYIYSNYEKELT 176 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 LA++ + + V YL + + T + + R + ++ Sbjct: 177 LQVLADQHHFTSV----YLSSYIKKNTGHTFLEILTSVRMYHAAKLLKTTNLK 225 >UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepID=C2JJ49_ENTFA Length = 230 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 132/231 (57%), Gaps = 10/231 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +N+LII+DD MVA ++++Y+ ++ T +T+ + + + L+LLD++++ Sbjct: 1 MNLLIIEDDPMVAYIHQKYLEKLIHQPTIFTVATIAEGL--LLTKEKQPALVLLDVHLKD 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGL L + + + ++VI+I++A + +K SLH GV+DYL+KPF RF++++ ++ Sbjct: 59 GNGLTYLATIRDEKIDTEVILITAANELENVKRSLHLGVLDYLVKPFSFERFQQSIENYQ 118 Query: 122 QKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRR------LPKGLTPQTLRTLCQWIDAH 174 +K + + Q ++DQL H S +N + + L KGLT TL+ L + ID Sbjct: 119 KKTAQFTLETKELSQTKVDQLFHYSQTNARKNEQALQNMSLEKGLTQATLQLLLKKIDEF 178 Query: 175 QDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 DY F+ EL+ +S VS RKY+++L ++L + Y GRP YR Sbjct: 179 TDY-FTIQELSEASQLSHVSVRKYVLFLEKNNLLESKNSYLKVGRPYQSYR 228 >UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodococcus sp. S9 RepID=Q9L4T4_9NOCA Length = 237 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 11/210 (5%) Query: 19 RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENGLDLLPVLHNARCKS 78 ++ + ++ A+++ +A+E++ DL L+D+Y+ +G+DL+ L Sbjct: 37 HHLNSLDQYEVAAVATSIAQARELLTTQ--SFDLALVDVYLPDGSGIDLVREL-----PC 89 Query: 79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAEL 138 D +V+S+AAD AT++ ++ G YLIKPF S + LTG+ + AL++ QA++ Sbjct: 90 DAVVLSAAADQATVRSAMTAGAWTYLIKPFPRSALVDRLTGYLGYRGALDRSDELTQADI 149 Query: 139 DQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKY 198 D + P + + T + + S E+A + ISR + ++Y Sbjct: 150 DGGLDALRPRAAAPLPASQSV---TRDLVLDAVRG-TAEPMSAGEVAAAIGISRATAQRY 205 Query: 199 LIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 L LV+ L + YG TGRP Y + Sbjct: 206 LATLVSKGRLRMQLRYGSTGRPEQEYSLPP 235 >UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG61_9FIRM Length = 533 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 10/169 (5%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V+I DD+ V L ++ V + G A +A E+I DL++ DI M Sbjct: 1 MMRVVIADDEEKVCLLIQKLVDWTAMDMEIVGVAHNGLEALELIETR--RPDLMITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G++L+ + I++S + +L YG DYL+KP + L Sbjct: 59 PGCDGIELIRRARQLDPALEFIIVSGYRHFEYAQSALKYGAGDYLLKPIKKDELTATLEK 118 Query: 120 W----RQKKMALEKHQYYD---QAELDQLIHGSSSNEQDPRRLPKGLTP 161 ++ L + + Q++LD+L G + RLP GL Sbjct: 119 MHGRWLRRTEQLSREEQMRLRLQSDLDRLRSGMFGDLLSGVRLPDGLEA 167 Score = 40.8 bits (95), Expect = 0.035, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 4/98 (4%) Query: 141 LIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLI 200 L S Q + + +RT Q+I H + + ++N V S Y Sbjct: 409 LRGMLSEAMQVLSEQKRQADTRPIRTAKQYIQEHYADPLTLEWVSNIVGFSGS----YFS 464 Query: 201 WLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 L + Y R + E + + C Sbjct: 465 SLFKKETGQNFLEYLSEVRMNRAKELLRETNLSVAEVC 502 >UniRef50_B1W048 Putative two-component system response regulator n=13 Tax=Streptomyces RepID=B1W048_STRGG Length = 224 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 101/242 (41%), Gaps = 29/242 (11%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL+++DD + A+ ++ YV ++ GF A T A + + Sbjct: 1 MIRVLVVEDDPVAADAHQMYVERVEGFTVTAVAHTRAAAVRALERT-------------P 47 Query: 61 K-----------ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQ 109 +GL LL L + +DVI ++SA D A +++ + GVV Y++KPF Sbjct: 48 VDLLLLDLYLPDGHGLGLLRSLRASGHGADVIAVTSARDLAVVREGVSLGVVQYVLKPFT 107 Query: 110 ASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQ 169 + L + + + A + Q E+D+ + P LPKGL+ TL + Sbjct: 108 YPTLRDRLVRYAEFRGA--AGEASGQEEVDRALGALRVAH--PAALPKGLSGPTLEAVTG 163 Query: 170 WIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 + + + ISR++ R+YL LV HYG GRP YR A Sbjct: 164 VLKESP-EGVTAAAAGERLGISRITARRYLEHLVTVGSAARRPHYGQVGRPELHYRWLAS 222 Query: 230 HY 231 Sbjct: 223 GR 224 >UniRef50_UPI0001BC2D80 two-component system response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D80 Length = 218 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 9/226 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVL++DDD V +++ RYV ++ GFQ L A+ II +DL+L D + Sbjct: 1 MINVLVLDDDFYVGQIHCRYVNEVAGFQALEPVRDLRTARTIIAEEQ--VDLLLADYVLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + NG++L+ D IV+S+ D ++ +L G + Y+ KPF A ++ L + Sbjct: 59 EGNGVELIRE-----TDVDAIVLSAVTDPDVVRSALRAGAMTYIFKPFAAEELQDFLRRY 113 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + ++ + Q +L++ + KG T + + +++ D + Sbjct: 114 ARFRRYWDREK-VSQPDLERQLRSLHDVASPGSAPAKGSGSSTSGRILEALES-ADQPLT 171 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 E++ V SR + +++L L + S+ YG TGRP + Y + Sbjct: 172 AMEVSEVVGTSRATAQRHLAKLAESRAVTVSLQYGSTGRPEHLYGM 217 >UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I404_DESAP Length = 224 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 113/228 (49%), Gaps = 5/228 (2%) Query: 1 MI-NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI +++D D ++ E + ++ +PG + + A E++ +T + L+ L + Sbjct: 1 MILKAVVLDSDPVMLEAHEDVLSLVPGCMVVLSTVSARSALEVLCGDETVLLLLELKLS- 59 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+LL + DVIV++ A DA T++ +L G+ DY+IKP++ R + ++ Sbjct: 60 -GADGLELLREIRRQGLPVDVIVVTGAEDAGTLEQALRLGIFDYIIKPYRRHRLKSSVES 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + L Q +QA +D + N +LPKGL T+ + ++ + Sbjct: 119 YAAMYVTLCGKQAVNQAWVDDHVFRRFPN-LPADKLPKGLHRLTMEQVVLFLGENIA-GV 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 S +E+A + SR + R+YL +L + + YG GRP +YR+ Sbjct: 177 SAEEVARGIGFSRATARRYLEYLARNGLARPDLEYGSIGRPTTKYRLV 224 >UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8F3_GORB4 Length = 233 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 4 VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63 VLI+DDD+ VA L+ V + GF+ TA ++ A+ + +DL LLD+Y+ + Sbjct: 19 VLIVDDDSRVAALHAAIVEAMRGFRVAATAGSIAGARAAL-ADHPHVDLALLDVYLPDGS 77 Query: 64 GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 G+DL+ L D V+ + DAA ++ ++ G + YLIKPF + L G+ Q Sbjct: 78 GIDLVGDL-----PCDCFVVGAETDAAAVRTAMRSGALAYLIKPFDDAELARRLAGYAQY 132 Query: 124 KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDE 183 + L+ ++ DQ +D + + R G +P R L + A D D+ Sbjct: 133 RRVLDA-EHVDQRAVDGALSALRFGTRPADRDDPG-SPTEKRILE--LFAAADGPLFADD 188 Query: 184 LANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 ++ + ++ + R++L LV L ++ YG TGRP YR+ Sbjct: 189 VSAAIGVAAPTARRHLANLVAAGKLSMTLRYGTTGRPRQEYRLAP 233 >UniRef50_A9KL59 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=A9KL59_CLOPH Length = 259 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 91/240 (37%), Gaps = 20/240 (8%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V+IIDD+ ++ + + + Q GTA + ++I D D+++ DI M Sbjct: 1 MYKVIIIDDEPVIVRGLSQTIPWEKHNCQVVGTAFNGKDGLDLI--RDQKPDILISDICM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL ++ + + K + +++ D + ++ GV +L+KP + + +AL Sbjct: 59 PGMDGLTMIASIKSQFPKMQICILTGFRDFDYAQRAICLGVTRFLLKPSKMNELLDALDV 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + ++ + S E ++ Q+ID + + Sbjct: 119 MTTNLSSSDVEIKKEELLISDTEQQDSPEENTASSFI-------VKNALQYIDENYQQKI 171 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 E+A + +S+ +L L++ H + RI+ L + Sbjct: 172 MLSEVAEHIYVSQW----HLSKLLHRHTGQNFSE------ILNNVRIEKAKELLNNPALR 221 >UniRef50_A8RM75 Putative uncharacterized protein n=2 Tax=Clostridium RepID=A8RM75_9CLOT Length = 253 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 92/234 (39%), Gaps = 24/234 (10%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V++++D+ MV + G A+ E+ E+ D+I+ D+ M Sbjct: 1 MYKVIVVEDETMVRRGIILTIDWAALDCVIAGEAANGEEGAELAV--RLSPDIIVTDVKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + +G++++ L C++ I++++ +D + +L GV DYL+KP + E+A+ Sbjct: 59 PRMDGVEMITKLREQGCRAKFIILTAYSDFKYAQSALRLGVSDYLLKPLRDGDLEQAVRH 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R++ + + + K + + ++I H + Sbjct: 119 IREQMEERPAKEE-----------ETDAAPVLRFHSDKKSKNKYVEAATRYIREHYREDI 167 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 + +A+ + IS YL + +T +Y YR+Q L Sbjct: 168 TISTVASFLEISEG----YLSRVFKKETDYTFTNYLA------YYRMQMAMNLL 211 >UniRef50_UPI00016C0A10 response regulator receiver protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0A10 Length = 257 Score = 176 bits (446), Expect = 7e-43, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 16/220 (7%) Query: 1 MINVLIIDDDAMVAELNRR-YVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI VL++DD+ + L R+ + GF+ G AS+ +A + I +S DLIL DI M Sbjct: 1 MIKVLLVDDEKLERVLIRKGFDWAKHGFEIIGEASSAAEALKFIQSSI--PDLILTDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + NGL+L + +++++ + + +L GV D+L+KP + Sbjct: 59 PQMNGLELTAKIRKQLPNCQIVIVTGYREFDYARRALKLGVTDFLLKPINMEEIAALVET 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + + + + +RL K + + L + + Sbjct: 119 LK-----FDAQTKKAPPNIPNTVEVIKAEPTQNKRLHKII----IEALDYVSTEIYNPDL 169 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGR 219 S +A++ + YL L I + I Y R Sbjct: 170 SLKLVASKTYSNES----YLSRLFKQEIGVSLIEYITQKR 205 >UniRef50_C8NE16 DNA-binding response regulator n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NE16_9LACT Length = 255 Score = 176 bits (446), Expect = 9e-43, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 92/240 (38%), Gaps = 30/240 (12%) Query: 1 MINVLIIDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M ++LI++D+ ++ + V + G A ++A +I + D++L DI M Sbjct: 8 MYSILIVEDEPVIRKGIASLVDFESLGISSVLEAENGKQAIAMI--QEQAPDILLTDINM 65 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +G+ L + + +I ++ + ++ GV DY++KP + E L Sbjct: 66 PKMDGITLAQLARAEFPQLRIIFLTGYDYVDYLLSAVKLGVDDYILKPVTKTEIESLLIK 125 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 K EK + + + ++++ + K + ++ + E Sbjct: 126 VVSKLNEEEKQRRLLE------LASKNTSQSESVHFEKLI-----------LEQLSNPEL 168 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 S ELA ++ S YL L+ + + Y V RIQ LL + Sbjct: 169 SLVELAKQLGFS----SNYLSMLIKKELGKSFQEY------VTDQRIQMAKRLLLSTDMK 218 >UniRef50_UPI0001C36ADD two component AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36ADD Length = 253 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 33/233 (14%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V+I+DD+A + GF+ G S + A E + +DL+L DI M Sbjct: 1 MYQVIIVDDEAKIRNGIAGLFPWSQLGFEIAGCFSNGKAAYEYTLANH--VDLVLSDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L L R +I S D ++ +L GVVDYL+KP + + LT Sbjct: 59 PIMDGLELSEKLLEKR-DIKIIFFSGYQDFEYVRRALRTGVVDYLLKPVKYEDLVDCLTR 117 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R + +S P R + LT + + + D ++ Sbjct: 118 IRDRL--------------------NSETHAAPAREEENLT--YYEKIISLVKNYLDTDY 155 Query: 180 ---STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 + ++ A VN+S YL ++ H Y + R R+ + Sbjct: 156 QNATLEQAARLVNLSP----NYLSRIMKEHSDVNFSDYLLKTRMENAARMLKD 204 >UniRef50_C2ASC2 Response regulator of citrate/malate metabolism n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2ASC2_TSUPA Length = 220 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 11/225 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL++DDD VA ++ + V +PG G+A T+ +A+ +I +DL L+D+Y+ Sbjct: 6 IRVLVVDDDFRVAAMHAKIVDTMPGLVTVGSARTVSEARAVIARE--RVDLALVDVYLPD 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+DL+ L D ++ +A DAA+I+ G + YLIKPF A+ + G+ Sbjct: 64 GSGIDLVRELR-----CDAFILGAADDAASIRAGFAAGALQYLIKPFPATELARRIGGYT 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + ++ Q ++D S P+R G T R + + Sbjct: 119 SYRRIVDGG-AITQEQIDAAASALRSERVVPKRDDGG--SVTERRIVDALRD-AGSPLLA 174 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 DE+A V +S + R+YL V L ++ YG TGRP RY + Sbjct: 175 DEIAERVGVSPATARRYLADQVRAGTLTMALQYGTTGRPRQRYAL 219 >UniRef50_C7IBY4 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IBY4_9CLOT Length = 255 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 83/214 (38%), Gaps = 21/214 (9%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI DD+ + Y GF+ AS ++A E I +D++L DI M Sbjct: 1 MYKLLIADDEPRLRNGISNYFPWNETGFEVLYEASNGKQALEFI--EKNHVDVVLSDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G+DL ++N VI ++ D K++++YGV +Y++KP + + E + Sbjct: 59 PIMSGIDLAREIYNRGMIIKVIFLTGYKDFEYAKEAINYGVKNYVLKPTKYNELAEVFSK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +++ +L + + G+ + + + ++ + Sbjct: 119 IKKELDK-------------ELENKVFEDVGTIDSEFNGIHEKIIAEVKDYVTENYHDA- 164 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIH 213 ++ A V++S YL L Sbjct: 165 RLEKAAGRVHLSEF----YLSKLFKRKTGENFSD 194 >UniRef50_A8RNS9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNS9_9CLOT Length = 273 Score = 174 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 102/234 (43%), Gaps = 18/234 (7%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + V+I++D+ ++ + + G GTA + E I D++L DI M Sbjct: 3 LKVVIVEDEEIIRKGLTFALNWLDMGCIIVGTAKDGAEGLETIRREQ--PDIVLTDIKMP 60 Query: 61 KENGLDLLP-VLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K NGL ++ + + + S +V++S ++ + ++H GV DYL+KP +E+L Sbjct: 61 KMNGLKMIETAIKDQQFYS--LVLTSYSEFELARQAIHMGVTDYLLKPVDEDELKESLDK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 RQ+ K++ ++ D+L+ +E K ++ +++ H + Sbjct: 119 IRQQIAYASKYEKIEKISQDRLLTVY--DEWKIFDSAKNSMDPYVKRTYEFVKQHYKEKV 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 S +++A + +S YL + + T + + +YRI+ L Sbjct: 177 SINQVAESLGVSTS----YLSRKLKAGLNTTFVD------LLNQYRIKKALNML 220 >UniRef50_A4XHB8 Two component transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XHB8_CALS8 Length = 546 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 72/152 (47%), Gaps = 4/152 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DDD ++ + R + + + C AST E+A E+I D+++ DI M Sbjct: 1 MYKILIVDDDMLIRKGIRNVIRWKDFDCEICAEASTGEEALELI--KKFTPDIVITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G++L+ + + +I++++ + + ++ +G D+L+KP + + Sbjct: 59 PNMDGIELIERIKAILPQCKIIILTAYREFEYAQRAIKFGAFDFLLKPTKVEDIINVVQK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQD 151 + EK + ++++L+ ++ Sbjct: 119 AIAEINK-EKTMIEELEKINRLLQEKLPILRE 149 Score = 42.7 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 11/77 (14%) Query: 164 LRTLCQWIDAHQDY-EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVY 222 ++ + ++I A+ Y E S E++ + +S YL L + + Sbjct: 436 IKKVIEYIKANYSYNEISLSEISEKFFVSPS----YLSRLFKKETGKNLSDF------IN 485 Query: 223 RYRIQAEHYSLLKQYCQ 239 YRI+ L + Sbjct: 486 EYRIEKAKELLATTDLK 502 >UniRef50_UPI0001789139 two component transcriptional regulator, LuxR family n=2 Tax=Bacillales RepID=UPI0001789139 Length = 216 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 8/199 (4%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI+VLI DDD + E + V P + A E+A ++ + D++L+DI M Sbjct: 1 MISVLIADDDPFIRESLKLLVGMDPDIEVSAVAEHGEEALSLLMDG-LHADVVLMDIRMP 59 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G++ + V+++++ D I ++L G YL+K R + + Sbjct: 60 VCDGVEGTRRIRERYPDVRVLMLTTFDDDDYIVEALRNGASGYLLKNIPPDRIIQGIKTV 119 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 M + H + L + GLTP R + A S Sbjct: 120 HDGNMLI--HPDIARKLTGMLRPTPQPVPRSAELEQFGLTPAEKRVV-----ALIAEGLS 172 Query: 181 TDELANEVNISRVSCRKYL 199 E+A ++ +S + + Y+ Sbjct: 173 NKEIAAQLYLSEGTVKNYV 191 >UniRef50_C6D416 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D416_PAESJ Length = 513 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 3/165 (1%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL++DD+ + E V G + G+A E+A E + + P+DL++ DI M Sbjct: 1 MYKVLLVDDEPFITEGLSDAVDWSAFGLEVVGSAEDGEEALERL--RELPVDLLITDISM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 GL+L+ + + VI++S + +K+ + G+ +YL+KP E LT Sbjct: 59 PIMTGLELIRKARELQPQLKVIILSGFNEFNYLKEGMRLGIENYLLKPINFGELEATLTD 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTL 164 +K A + + + E+ L + + R LT +T Sbjct: 119 TVRKLEADKPEKPLGEDEIGILRDNVMTRWVNGRIALPELTERTA 163 Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 10/76 (13%) Query: 164 LRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYR 223 ++ ++I H + L + +I YL L N T Y + + Sbjct: 413 IKQALRYIHEHYAEALTLKSLGLQFHIHP----NYLGQLFNKQTGDTFTDY------LNK 462 Query: 224 YRIQAEHYSLLKQYCQ 239 YRI L + Sbjct: 463 YRIDKAKELLADSRLK 478 >UniRef50_B8FWU4 Two component transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=B8FWU4_DESHD Length = 265 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 85/225 (37%), Gaps = 19/225 (8%) Query: 1 MINVLIIDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DD+ ++ + ++ + Q A A +I+ + D++L DI M Sbjct: 7 MYKLLIVDDEPIIRQGIKQLINFQEQSISEVYEAEDGALALDIV--KEKRPDIVLADINM 64 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L + + V VI+ +L GV DYL+KP S E L+ Sbjct: 65 PNLDGLNLAREIKAVDPEIRVAVITGYDYFEYAVTALKAGVDDYLLKPVSRSDILELLSK 124 Query: 120 WRQ--KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 K+ ++ A L QL HG + R + + +L D Sbjct: 125 LVNDLKEKTEQRRAMDSLASLKQLEHGGNEGHHHYREMILQVMNHSL----------SDP 174 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVY 222 FS LA +N+S YL + + Y T R Sbjct: 175 AFSLGRLAEAINLSSG----YLSTVFKQNFGIPFQEYLTTMRLER 215 >UniRef50_A6M388 Response regulator receiver protein n=3 Tax=Clostridium RepID=A6M388_CLOB8 Length = 267 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 11/216 (5%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 I V+IIDD+ ++ +L + + G + AS + +I D+IL DI M Sbjct: 5 IKVMIIDDEHLIRDLIKNCIDWNEIGMEIVAEASNAVEGLNLINKEK--PDIILTDINMP 62 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GLD+ + VIVI+ + K S+ GV D+++KP ++ Sbjct: 63 VTDGLDMSKSILERYPDIKVIVITGYNEFEYAKRSIKIGVNDFILKPIDEDELRNSVLKL 122 Query: 121 RQKK--MALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 + + L+K +Y D E + + + K L+ + ++ + + + Sbjct: 123 KDEIQDEYLKKKEYKDIKEKMVVYNNIINLNDANETEDKNLSIEQIKKFI--VKNISNRD 180 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHY 214 S +A ++ YL + T Y Sbjct: 181 LSLKLVAEYFYVNPS----YLSRIFKEKTDETFSEY 212 >UniRef50_A8RI10 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RI10_9CLOT Length = 250 Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 27/230 (11%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V+I DD+A + GF+ G+ S A + +S P+DLIL DI M Sbjct: 1 MYQVIIADDEAKIRSGLANLFPWNQLGFEITGSFSNGRDAYDFALSS--PVDLILSDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L L + + K +I S D ++ +L GV DYL+KP + + LT Sbjct: 59 PLMDGLELSERLLSRK-KIKIIFFSGYQDFDYVRKALRNGVFDYLLKPVKYEDLADCLTR 117 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++ L+ + + + T+ ++D + Sbjct: 118 VKE------------------LLDSEQGQDMPEVCESLSYYEKIISTVKNYLDTSY-QDA 158 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 + ++ A V++S YL ++ H + Y + R R+ + Sbjct: 159 TLEQAARLVSLSP----NYLSKIMKEHSDTSFSDYLLKTRMENAARMLRD 204 >UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6P1_THEAS Length = 224 Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 10/229 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +LI +DD + L + ++ + G G + E+ +L+LLDIY++ Sbjct: 4 YGLLIAEDDPSMVRLYKAFLQGVEGVSLLGVTPSGEELLRYFRRG-GRAELLLLDIYLEG 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG+D+L L DVIV++S + T+ +++ GV DYL+KPF SRF AL Sbjct: 63 SNGVDILRELRGMGVDLDVIVVTSESSPRTVGEAMRLGVFDYLVKPFGGSRFGRALDDLV 122 Query: 122 QKKMALEK-HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + +++ + Q ELD+L+ G LPKGL TL+ + + + + Sbjct: 123 AFRRRIDRVNSRMSQDELDKLLGGG------EEELPKGLHRSTLKGILSLLSCFGEA--T 174 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 D L+ E+ +S+ S R+Y+ +LV + + + GRPV YR+ ++ Sbjct: 175 VDRLSEEMGLSKSSVRRYMDYLVREGEVELRLKHLGRGRPVNVYRLPSD 223 >UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAH6_GORB4 Length = 237 Score = 173 bits (440), Expect = 4e-42, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 110/239 (46%), Gaps = 26/239 (10%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTP------------ 49 + VLI++D+ ++A+ +R ++ +I GF+ T ++A + ++ Sbjct: 7 LRVLIVEDEPLIAQAHREFLRRIGGFEVIAAVRTGQEALRVAGSAAASATPVDLVLLDLG 66 Query: 50 -IDLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPF 108 D G+D+ L R D+I I++ + AT++ ++ +GV+ YL+KPF Sbjct: 67 LPD----------ARGVDVASALSGLRPDPDIIAITAQRELATVRTAMSHGVLLYLLKPF 116 Query: 109 QASRFEEALTGWRQKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTL 167 + FEE + +R+ + AL Q ++D+ + + R + KG P+T + Sbjct: 117 TFAAFEEKIGQYRRYRQALSGAGDAVSQRDVDRAVSELRT-TSTRRTVKKGAVPETEDAV 175 Query: 168 CQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + + + ++A + SRV+ +YL L + +L YG TGRP RY Sbjct: 176 GRAVRDSTG-GLTASDVAGLLGSSRVTAWRYLERLADDGVLDRVTEYGNTGRPQVRYVW 233 >UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=Thermomicrobia (class) RepID=B9L2G4_THERP Length = 246 Score = 173 bits (440), Expect = 4e-42, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 91/228 (39%), Gaps = 22/228 (9%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI+DD + E R+ + P + G A+ + A +++ ++ D++L+DI M Sbjct: 28 IRVLIVDDHDLFREGLRQLIETDPAIEVVGEAANGQDALKMV--AELQPDVVLMDINMPG 85 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ + V++++ D + ++ G YL+K + A+ Sbjct: 86 MDGIRATEAIVQQYRHVHVLMLTMYDDEEYVLHAIRAGARSYLVKNSKPEELLRAIHVAA 145 Query: 122 QKKMALEKH-QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + ++ E +L+ + + QD L+ + L L ++ Sbjct: 146 EGGATIDPDLAPILMREYQRLLTKAPTRGQD-------LSDRELTMLRLLA-----QGYN 193 Query: 181 TDELANEVNISRVSCRKYLIWLV-------NCHILFTSIHYGVTGRPV 221 ++A+ +N++ + + L L + +I +G+ RP Sbjct: 194 NRQIADALNLAESTVKNNLSALFQKLGVRDRTQAVIYAISHGLVPRPT 241 >UniRef50_C3WDI9 Two component transcriptional regulator n=2 Tax=Fusobacterium RepID=C3WDI9_FUSMR Length = 269 Score = 173 bits (439), Expect = 5e-42, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 95/240 (39%), Gaps = 15/240 (6%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI VLI++D+ ++ + + G A E I + DL++ DI M Sbjct: 1 MIRVLIVEDEEIIRKGLINTIDWIEKDCNIVGEAINGLDGLEKI--RELKPDLVITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGL+++ + + I+++S + K+ ++ GVV+YL+KP +AL Sbjct: 59 PNLNGLEMIKRCQSENIVFESILLTSYGEFEYAKEGINIGVVEYLLKPLDEELLYKALDK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +QK + + ++ + + + + Q I + + Sbjct: 119 VKQKLENKKNLEVL--EKVSKTKEELEFFNINICFEKAQTKNKYVYKALQKIQNRYNEKI 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 S E+A+E+ +S YL + T + + +YR+Q L+K+ + Sbjct: 177 SIIEIADELGVSSG----YLSRKFKEELEETFLE------ILNKYRVQKAMKLLVKEDLK 226 >UniRef50_C6IZP2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZP2_9BACL Length = 520 Score = 172 bits (438), Expect = 6e-42, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 14/196 (7%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI VLI+DD+ + E R ++ G++ A+ +A E DL++ DI M Sbjct: 1 MIKVLIVDDEPKLREGLRTFIDWGAYGYEVVDMAANGNEALEK--YQQYHPDLVVADIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L+ L ++++S AD + K ++ + YL+KP ++ L Sbjct: 59 PGMDGLQLIEKLRAQDPNLHILILSGYADFSYAKKAMTHRADGYLLKPVDEDELKDYLWK 118 Query: 120 WR----QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLP-------KGLTPQTLRTLC 168 + ++K + + + + LI + E + P G++ + + L Sbjct: 119 IKLTIDEEKASEQWKHVTTEWNREALIQSVLTGEDEEDPTPLCERAHEVGISGKVFQILL 178 Query: 169 QWIDAHQDYEFSTDEL 184 D + +EL Sbjct: 179 LAPQMEGDTDARINEL 194 >UniRef50_Q5WBZ0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WBZ0_BACSK Length = 249 Score = 172 bits (438), Expect = 6e-42, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 34/235 (14%) Query: 1 MINVLIIDDDAMVAELNRRYVAQ-IPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V+I +D+ M+ + V Q + F G A E+A E++ + D++L DI M Sbjct: 12 MYKVVIAEDEKMIRKGLVTIVDQLVTDFTVIGEADNGERALELL--AHDCPDVLLTDIRM 69 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +GL L+ + ++++S + A + ++ +GV YL+KP + A Sbjct: 70 PKCDGLSLIREARSYYPHVKIVIVSGHEEFAYAQQAIQHGVSRYLLKPIDRTEVVLAFDE 129 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++ + E+ + + ++ + +I H D + Sbjct: 130 IKRGLVEPEQEDHENHL---------------------------IQQVDSYIKTHIDQDI 162 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLL 234 + +A V++ Y Y R + + + Sbjct: 163 TLQAVAKLVHLHPT----YFSQWFKNETGQNFSTYVTQKRLERAETLLHQTNLRV 213 >UniRef50_C6D7X2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7X2_PAESJ Length = 267 Score = 172 bits (437), Expect = 8e-42, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 11/239 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DD+ + E R ++ G + + A E++ ID+++ D++M Sbjct: 1 MYKVLIADDEVLDLEGMRLFIPWTELGLEVVAAVNNGFDAYEVLKGGK--IDILVTDVHM 58 Query: 60 QKENGLDLLPVLHNARC--KSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 +GL+L VI +S D +K +L Y++KP S +AL Sbjct: 59 PSMSGLELARKAQETESCLGLRVIFVSGYQDFHYVKQALSLRAYSYVLKPMDDSELVDAL 118 Query: 118 TGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRR--LPKGLTPQTLRTLCQWIDAHQ 175 ++ + + Q ++ + + +Q P + G + ++ + ++ H Sbjct: 119 VHVTKELDEVTRKQEEERQWREAARRTAPRYQQLPENVSVEPGKHTKLIQEVTAYMKEHL 178 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLL 234 + + E+A S YL + + Y +T R + + + Sbjct: 179 NRSLTLKEVAERFAFSP----NYLGLMFKEEMGVGFSEYVITMRMERAGELLKDPKVKI 233 >UniRef50_A8MKS9 Two component transcriptional regulator, AraC family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKS9_ALKOO Length = 253 Score = 172 bits (437), Expect = 9e-42, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 25/237 (10%) Query: 1 MINVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DD+ + + ++ + + A E A + + ++IL+DI M Sbjct: 1 MWKVLIADDEPKIRKGLKKILQSFNLDIEIVAEAEDGEIALNL--AQEHKPNIILVDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGL + + + + +I+I+ + K ++ V +YL+KP A+ +E + Sbjct: 59 PFLNGLGFIEKIRDFLPNTMIIIITGYDEFYYAKKAIQLQVFEYLLKPVNATELKEIMLK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ-DYE 178 + L + LD++ + E P + + +ID + + Sbjct: 119 VITQLQKLPNN-------LDRIETKNKDAEYSP----------IVMGIKNYIDGNYMQED 161 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLK 235 S E+A+ +IS YL L+ + T I Y R +I E +K Sbjct: 162 LSMQEVADRFDISLS----YLGKLMKHELGKTFIEYLTEVRMESAKKILQEENINIK 214 >UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC64_9FIRM Length = 276 Score = 172 bits (437), Expect = 9e-42, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 84/197 (42%), Gaps = 7/197 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +N+LI DD+A++ + G + + +AKE++ + T IDL++ DI M Sbjct: 1 MNLLIADDEAVIRRGLLSLDWKSIGITDVYSVANGVEAKELLLS--TSIDLVIFDIRMPG 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+L ++ V+++S ++ + ++ YGV +YL+KP + E + Sbjct: 59 FSGLELAQMVKERSMDVAVVLLSGFSEFEYARSAMRYGVYEYLLKPVSPNELMETMHNVM 118 Query: 122 QKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + + Q + H + S G ++++ I + + S Sbjct: 119 HRLEQKRFEQKLLSQKDEFGEKHDAVSQVNSLFVQSSGA----IKSILTDIAQNYEQNIS 174 Query: 181 TDELANEVNISRVSCRK 197 +LA + + S + Sbjct: 175 LADLAEKYHFSESYISR 191 >UniRef50_A5N731 Transcriptional regulator n=4 Tax=Clostridium RepID=A5N731_CLOK5 Length = 251 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 94/238 (39%), Gaps = 29/238 (12%) Query: 1 MINVLIIDDDAMVAELNRRYVAQ-IPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI DD+ + + R + + + + D+IL+DI M Sbjct: 1 MYKLLIADDEPLERKALRIILQRDFYNIDIKKDCKNGHEVV--LNAKIYKPDIILMDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 ++NGL+ + I++++ ++++ YGVV+Y+IKP + + + AL Sbjct: 59 PEKNGLEAQKEIIQFLPNVKTIILTAYEKFDYAQEAIKYGVVNYMIKPVRTNDLKIALNK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 Q EKH +++ K + T++ + ++ID + + + Sbjct: 119 VIQSIETTEKHDNLKMTDIN----------------AKNIYEDTIKIILKYIDNNFNRKI 162 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 + + +AN V+++ +Y + T Y + + R++ L+ Sbjct: 163 NLNSVANYVHLNPQYLSRY----FKQKMGITFTQY------ITKLRLEKAKKLLINTD 210 >UniRef50_UPI00017880F1 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017880F1 Length = 518 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 19/228 (8%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VLI+DD+ + E + V G+Q TA+ +A E + DL+L+DI M Sbjct: 1 MMKVLIVDDEPKLREGLKSIVPWTELGYQVVDTAANGNEALEK--HGKYDPDLMLIDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L+ + N + ++++S AD K ++ + V YL+KP + L Sbjct: 59 PGMDGLQLIEAIRNLDAEIHLLILSGYADFDYAKRAISHRVDGYLLKPVDEDELSKYLLQ 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTL--------CQWI 171 ++ ++ + ++A + +P P + + + Sbjct: 119 IKEAIEQEQERKALNRAASEMSREQFIQTWFNPESKPDSAALRHMAERSGLLWNHYQVLL 178 Query: 172 DAHQDYEFSTDELANEVNISRVSCRKYL-IWLVNCHILFTSIHYGVTG 218 H + S +E + + + L +G G Sbjct: 179 FHHNGSDESGEETDDRL-------KNQLIEAFEENGRGAVFSLHGQLG 219 >UniRef50_C2KZS5 Response regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KZS5_9FIRM Length = 249 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 82/218 (37%), Gaps = 22/218 (10%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + ++I+DD+ + + R ++ G + G + A + S+ D+++ DI M + Sbjct: 1 MKIMIVDDEPKIRQGLRTLLSGQEGMEVVGAYESAISAL--LAISEKNPDVLITDIRMPE 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGLD + + + +I++S ++ + + ++ YGV YL KP AL Sbjct: 59 CNGLDFIEKIREKDERIKIIILSGYSEFSYAQRAIKYGVYRYLTKPTNPRELLMALRELG 118 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + ++ + +R +I+ H + Sbjct: 119 FNTRKNDGEAV----------------GKNVFSENFEVGNYLVREAMNYIEVHYAEKIGL 162 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGR 219 +A+ ++IS YL L H+ Y + R Sbjct: 163 KSIADVLHISP----NYLSDLFRLHLKDNFSDYLLAFR 196 >UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRT4_9BACE Length = 534 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 89/256 (34%), Gaps = 29/256 (11%) Query: 2 INVLIIDDDAMVAELN-RRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 VL+ DD+ + R+ GF G A +A E+ + D++L DI M Sbjct: 4 YRVLLADDEEEIRAGISRKIDWTGLGFALVGEAENGAEALEL--SEQLKPDVVLTDIKMP 61 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL+L L + + ++V S D + ++ GV +Y++KP A E LT Sbjct: 62 FMDGLELCRRLRQSLPAAKLVVFSGFDDFEYARQAVGMGVSEYIMKPINAPEMGEVLTRL 121 Query: 121 RQ---------------KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLR 165 R+ ++ E + +L+ G +Q R + Sbjct: 122 REQLDKQRMERRDMETLRRRYEESLPVLRELFYTRLLDGRIRPDQVADRAARYELDMPEG 181 Query: 166 TLCQWIDAHQDYEFSTDELANEVNISRVSCRKYL-IWLVNCHILFTSIHYG-------VT 217 T + E S ++ + +S R +L + S+ Y Sbjct: 182 TWSAALVRVGGAEESAEQRDELLLLS---VRAFLDEHFSLPGAVVCSLLYNDAVALLVHL 238 Query: 218 GRPVYRYRIQAEHYSL 233 RP Y + E L Sbjct: 239 ERPEQVYALTEEMERL 254 >UniRef50_Q5WIY3 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIY3_BACSK Length = 493 Score = 171 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 10/192 (5%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DD+ M+ E + + + GF+ A + A E DL++ DI M Sbjct: 1 MYKVLIADDEWMIREGVKNLIPWEHYGFEVASLACNGKDALEK--YKHDKPDLVIADIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + +GL LL + +++S AD ++++ +GV YL+KP + E L Sbjct: 59 PQMDGLSLLKEIRTENEAVPFLLLSGHADFHYAQEAIGHGVDGYLLKPLEEDELIEHLQI 118 Query: 120 WRQKKMALEKHQYYDQAEL----DQLIHGSSSNEQDPRRLPK---GLTPQTLRTLCQWID 172 K ++ Q + ++L+ + + P + GL + Sbjct: 119 VFHKLEQRKQAHVLRQQSVRIEQERLLLNLLAGKPLPTSVDFSRLGLAASRYQIFLVHAG 178 Query: 173 AHQDYEFSTDEL 184 E +++ Sbjct: 179 ERDALEHLAEQI 190 >UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7D2_9BACL Length = 227 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 15/214 (7%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFN--SDTPIDLILLDIYM 59 I V+I+DD MV + Y+ Q PGF+ A +A E++ + D+IL+D+ M Sbjct: 13 IKVMIVDDHDMVRMGLKTYLMQDPGFEVIAEAGDGREAVELLERGLREGQPDIILMDLMM 72 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NG + + + +++++S + + ++ G V Y++K A AL G Sbjct: 73 PGMNGAEATKEVRSRFPDMKIVILTSFLEDDLVVQAVEAGAVSYVLKTVSAEELIYALQG 132 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + QA L ++ + G+T + L Sbjct: 133 AYRGMPVMTGE--VAQALTRGL------RQRTVQGDDSGMTEREKEVLLLIA-----EGK 179 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIH 213 S ++A E++IS + + ++ L+ L Sbjct: 180 SNKDIAEELHISIKTVKTHVSNLLMKCELEDRTQ 213 >UniRef50_UPI0001C36B1C two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36B1C Length = 505 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 12/187 (6%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 +N+LIIDD+ +V E + GF CG A E+ +I DL+LLDI + Sbjct: 1 MNLLIIDDEQIVREGLKTIFPWAEYGFTVCGEAKNGEEGVSLI--RSLNPDLVLLDIRLP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 K +GL++L + +I++S AD K ++ GV YL+KP A+ Sbjct: 59 KLDGLEVLKTVREEGFGGQIIILSGYADFDYAKTAIRLGVCSYLLKPIDEEELLHAVKQA 118 Query: 121 RQKKMALEK---------HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWI 171 ++ ++ Q + LD L G+ ++ LT + L I Sbjct: 119 KETLEKEKRESDQALKSPEQVRRELLLDILNGGAEHKREELLACSMDLTADAYQVLLVVI 178 Query: 172 DAHQDYE 178 + Sbjct: 179 KDRKPDG 185 >UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0H3_THERP Length = 245 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 19/225 (8%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 IN+LI+DD + R + Q P F G A+ +A + + D+IL+D+ + Sbjct: 4 INILIVDDHPLFRSGIRWSLEQNPQFVIVGEAADGSEALRL--ADELSPDVILVDLSLPG 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGL++ L + ++ VI+++ D + +++ G Y K + + + +T Sbjct: 62 MNGLEVARALKRRQPQAGVIILTMHQDDEQLFNAIRAGASAYCTKDIEPEQLIDVITRVA 121 Query: 122 QKKMALEK----HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 + + + + + LDQ S ++ LTP+ + L Sbjct: 122 RGEYLINEMVLSRPFVASRVLDQ-FRELSRLDRTSSGFFSPLTPREIEIL-----DCVAR 175 Query: 178 EFSTDELANEVNISRVSCRKY----LIWLV---NCHILFTSIHYG 215 +S E+A +NIS + + + L L + ++ +G Sbjct: 176 GYSNKEIAQALNISDQTVKNHITSILRKLAVNDRTQAVIYALRHG 220 >UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V3H9_9FIRM Length = 255 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 88/235 (37%), Gaps = 17/235 (7%) Query: 1 MINVLIIDDDAMVAELNRRY-VAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI VL+IDD+ M + + + G + G A + + + + D++++DI M Sbjct: 1 MIKVLVIDDEPMQRQGIVQLTPWKDFGAEVVGAAGSGMEGI--LMAREHRPDILIVDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 GL+++ L ++ I++S ++ + ++ GV YL+KP A+ Sbjct: 59 PGLTGLEVISRLRGE-LDAEYIILSGYSEFEYAQRAISLGVCAYLLKPLDDEELAAAMKL 117 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 M + D + + E+ R L + ++ H Sbjct: 118 AAGHIMGRRTENIHPDQREDMCGNIALPKEEPVRGY--------LLHAMRHMEEHIAEPI 169 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLL 234 + E+A+E+ +S YL L + + Y R + E + + Sbjct: 170 TVREVADELGLSVS----YLHKLFSRC-GTSFSSYLTECRLRRAGHLLRESDAKV 219 >UniRef50_C1I3A1 Response regulator receiver protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I3A1_9CLOT Length = 249 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 96/241 (39%), Gaps = 27/241 (11%) Query: 1 MINVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+N+L+++D+ + + R + I F G+ S ++A +I P D+I+ DI M Sbjct: 1 MLNILVVEDEGPIRDWIRYTIKNISDDFNIIGSVSNGKEAYDIAL--KNPPDVIITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIK-PFQASRFEEALT 118 +G++L + + +I++++ A+ + K+++ GV +YLIK + E L Sbjct: 59 PVMDGIELSKRIKEVIPEVYIIILTNFAEFSYAKEAISCGVYEYLIKSDIRPKELSEILN 118 Query: 119 GWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 K + D+ +LD+ +++ ++ID + Sbjct: 119 KINAIIK--SKIEIKDEEKLDKHNIVKPKA-----------YSRSIEKALKYIDDNYKKH 165 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 S ++A + +S +Y L + Y YRI+ + Sbjct: 166 ISLMDVAKHIYLSH----EYFSRLFKEEVGENFSTYLTI------YRIKKAKELIKNTDM 215 Query: 239 Q 239 + Sbjct: 216 K 216 >UniRef50_UPI000050F8A6 two component transcriptional regulator, LuxR family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8A6 Length = 222 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 3/213 (1%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I V+I DD++++ R + A+ +A E+ + DLIL+DI M Sbjct: 3 IRVIIADDESLMRSGLRLLLGAADDIDIIAEAANGAEAIEL--ARELSPDLILMDIRMPV 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+ L +V+++++ + +L G Y++K A+ Sbjct: 61 MDGLEATRALMAQTLHPEVLILTAFGTDEFVLQALRSGAAGYILKDTPPEDLIHAVRAAA 120 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQT-LRTLCQWIDAHQDYEFS 180 L D + + +P G P L T + I + Sbjct: 121 NGTRTLSPSAVESLLGRDTTSATGVAGASNWNSVPIGPDPLEPLTTREREIAEAVAQGMT 180 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIH 213 ++A + +S + + +L + + T + Sbjct: 181 NAQVARALFVSTATVKTHLARIFYKLDVSTRVQ 213 >UniRef50_Q893H5 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q893H5_CLOTE Length = 259 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 28/234 (11%) Query: 1 MINVLIIDDDAMVAELNRRYVAQ-IPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M ++I DD+ + + + TA E+A ++I ++IL+DI M Sbjct: 1 MFRIVIADDEDTIRNGLKNLIESYELNLSVIATAKDGEEAMKVI--EKYHPEIILMDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGLD++ +H + +I+IS + + +L GV +YL+KP F++ L Sbjct: 59 PFMNGLDVIKGIHERNKDAKIIIISGYSQFEYAQKALELGVFNYLLKPINYRDFKDILIK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + +++ + K + + E Sbjct: 119 AMDSYSKRMWEISKIKEGKEKIESCKDVGNLAISYIKKNFS---------------NNEI 163 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 S + +A + IS+ YL ++ + Y + + RI L Sbjct: 164 SLNLVAQQFYISQS----YLTRVIKQKTGVSFTDY------LNKLRINMAKKLL 207 >UniRef50_UPI0001789951 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789951 Length = 539 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 7/171 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DD+ +V E R + G++C G A E + D++L DI M Sbjct: 1 MYTILIVDDEPIVREGIRNRIQWSEHGYECIGDCENGRDALEAVTRHQ--PDVVLTDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L + K+ +I+++ D + ++ V D+++KP A+ + L Sbjct: 59 PYMDGLELSRHITERFPKTKIIILTGFDDFEYAQQAVKLQVTDFILKPVTAAELRDMLDK 118 Query: 120 WRQKKMALEKH----QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRT 166 + + H + + + L+ + P + R Sbjct: 119 LKLEMDEERGHTEHLKRLKKQLNESLVLLRERFLERLASSPMKRSEMESRL 169 Score = 40.4 bits (94), Expect = 0.055, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 8/119 (6%) Query: 121 RQKKMALEKHQYYDQAELDQLIHGS-SSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ-DYE 178 ++K++ + + + E+++ ++ +D + K + + +I H D E Sbjct: 387 KEKRLLSDLYSFRSLDEIERWLNEVCEQALRDVAKTRKDIARSQMLEAVDFIQRHYEDEE 446 Query: 179 FSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 S + + + +S Y L H T + Y R + +SLLK Y Sbjct: 447 LSIKTVCSRIFMSTS----YFSALFKSHTGKTFVEYVTEVRMEKAKELL--KHSLLKTY 499 >UniRef50_C6D7A9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7A9_PAESJ Length = 533 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 30/219 (13%) Query: 1 MINVLIIDDDAMVAELNR-RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI+DD+ + + GFQ G A +A E++ S+ D++L+D+ M Sbjct: 1 MYKVLIVDDEFYFRQALKISLPWSELGFQIAGEAKNGAEALELM--SEVEPDVVLVDMNM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+ + K+ +V+S ++ A + ++ GV +Y++KP + +L Sbjct: 59 PIMDGLEFIHKAKERDQKTKFLVLSGHSEFAYARQAVQLGVSNYVLKPINEEELQSSLLN 118 Query: 120 WRQ---------------KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQT- 163 ++ +K A E + + L+ + GSS + RL PQ Sbjct: 119 IKELIRSERLGELELDDLRKQASEGFSFMKEQVLNDWLQGSSRSRPQQNRLHDLGIPQEG 178 Query: 164 --LRTLCQWIDA----HQDYEFS-----TDELANEVNIS 191 RT+ +DA H D + E+A S Sbjct: 179 LHYRTVVVDLDADEERHPDEGMTIPKAKVQEIAKRCMQS 217 >UniRef50_A8RWS2 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWS2_9CLOT Length = 506 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 14/170 (8%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ ++I DD+ ++ E R ++ Q G + G S +A E I D D++L DI M Sbjct: 1 MLKLVIADDEKIIRETIRNFIDWQSIGIEVVGVCSNGVEAYETIL--DYYPDIVLTDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L+ + I++S K+++ +G+ YL+KP + +A+ Sbjct: 59 PGFSGLELVKKIKEIDNNIQFIILSGYDSFEYAKEAMQFGIHHYLLKPCNEHQIIDAINA 118 Query: 120 WRQ-----------KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKG 158 ++ +K + + Q + LI S+E L K Sbjct: 119 VKEDCYKQRSFLAMQKQQKDNEKNLAQNVMKNLIFECISSESSMLSLTKN 168 >UniRef50_C6J5Q8 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J5Q8_9BACL Length = 276 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 80/248 (32%), Gaps = 20/248 (8%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL+ DD+ + E R ++ G + G S A E++ ID+++ D+ M Sbjct: 1 MYKVLLADDEHLDLEGMRTFIPWSELGMEVVGAVSNGFSACELM--ERQAIDILVTDVNM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L + + V+ +S D +K +L Y++KP +L Sbjct: 59 PHMSGLELARRAMDRKPDVRVVFVSGHQDFHYVKQALSLKACSYVLKPMDDDELVASLRQ 118 Query: 120 WRQKKMALEKHQYYDQAELDQL----------IHGSSSNEQDPRRLPKGLTP---QTLRT 166 + + ++ L + + + R P + +R Sbjct: 119 ITLELEHEANRKRTEEQYLKMMQALQAQGVEKLEDEQERQAAARLTESRPAPGCSRLIRE 178 Query: 167 LCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRI 226 + + A + +A + S YL L R ++ Sbjct: 179 IIATMQARLHENLTLKNIAQQFAFSP----NYLGHLFKEETGQGFSEMLTELRMERARKL 234 Query: 227 QAEHYSLL 234 + + Sbjct: 235 LKDPKVKI 242 >UniRef50_C5EPK7 Two-component response regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EPK7_9FIRM Length = 289 Score = 169 bits (430), Expect = 5e-41, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 14/237 (5%) Query: 1 MINVLIIDDDAMVAELN-RRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +V+IIDD+ + E + + G + GTA E+I D D++++DI M Sbjct: 21 MYSVVIIDDNKIAVEAIAKSTDWEKCGCRVAGTAYDGIAGLELI--HDVAPDIVIIDIQM 78 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGLD++ + AR + I+IS + + ++ YGV DYL+KP E+AL Sbjct: 79 PGFNGLDVIKKIKGARKDTQFIIISGYSQFEYAQQAIRYGVCDYLLKPIMTEEMEQALMH 138 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 E + + + R +G + + + ++D + + Sbjct: 139 VADALRKKEAES------VPAHMDSLEARLYAIRSGRQGYSSMVSQAI-SYVDRNINRNI 191 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQ 236 S ++ +E+ +S + Y + + + + + Sbjct: 192 SLSDVCDELLVSMS----HFSKCFKKETGAGFSSYVTMMKMENARILLRNPKNRVNE 244 >UniRef50_A6TVR4 Two component transcriptional regulator, LuxR family n=5 Tax=Firmicutes RepID=A6TVR4_ALKMQ Length = 208 Score = 169 bits (430), Expect = 5e-41, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 14/204 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + VLI+DDDA++ + + + F GTAS ++A E + DLIL+DI M Sbjct: 1 MKVLIVDDDALIRDSLKILIDLEADFTVVGTASNGQEAFEFC--KEYAPDLILMDIRMPI 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ ++ + +I++++ D IK++L G Y++K A E+L Sbjct: 59 MDGVLATKMIKESFGSIRIIILTTFKDDQYIKEALKNGAQGYILKSQSADSIIESLRTV- 117 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 K + E+ ++ E++ L LT + + S Sbjct: 118 ------SKGNVVFETEIASVLTSMLKEEKEKHHLDLQLTEREHEIIKWV-----GEGLSN 166 Query: 182 DELANEVNISRVSCRKYLIWLVNC 205 E++ + +S + R Y+ L+ Sbjct: 167 REISAALYLSEGTVRNYVTQLLEK 190 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 169 bits (430), Expect = 6e-41, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + +LI+DD+ +V E + V Q + G + + A ++ D+IL DI M Sbjct: 1 MKILIVDDEPIVREGLKNNVSWQELDLRVVGCEANGKSALDVFNREQ--PDIILTDIRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG- 119 +GL+L + VI++S+ D + ++ G DY++KP +E + Sbjct: 59 FMDGLELTREVKKLDPLVVVILLSAYDDFKYAQQAIRLGAFDYILKPIDIDTLKETVRRA 118 Query: 120 WRQKKMALEKHQY 132 ++K L+K + Sbjct: 119 VLKRKELLDKKKE 131 >UniRef50_C0D4G6 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D4G6_9CLOT Length = 259 Score = 169 bits (430), Expect = 6e-41, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 99/239 (41%), Gaps = 19/239 (7%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V+I++D+ ++ + V G A+ + E+I + D+ ++DI M Sbjct: 1 MYKVIIVEDEDIIRKGLVYSVPWAEMDCNVVGEAANGIEGLELI--REHNPDIAVIDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G +L + + I++S +D K ++HYGV YL+KP + +EA+ Sbjct: 59 PMMDGFQMLENSYEQYNYAP-IILSGYSDFEYAKRAIHYGVKGYLLKPLNMTDMKEAIRL 117 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +++ + + + D S+S +D ++ P + + R + ++I + + Sbjct: 118 AKRECEIRNAWISHQKTKED---WESTSVLKDFQKQP--VEDRLARRMLEYIFENYQQKI 172 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 +L + +N S +L + T Y + RYRIQ + + Sbjct: 173 VMQDLVDHLNYSEA----FLNRKFKDAVGTTFNDY------LNRYRIQKALEMIRQGDL 221 >UniRef50_A9QDR4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=A9QDR4_PAESJ Length = 522 Score = 169 bits (430), Expect = 6e-41, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 14/200 (7%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL++DD+ V + R + + G++ C A ++A E I DL++ DI M Sbjct: 1 MYKVLLVDDEIFVRKGLRNLIDWESLGYEICDEAGNGQEALEKIQL--IKPDLVIADIRM 58 Query: 60 QKENGLDLLPVLHNARCKSD-VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 +GL+L+ + S I++S D + +L YGV DY++KP + E L Sbjct: 59 PVLDGLELIRKVTEEGVHSPTFIIVSGYHDFQYAQRALRYGVHDYILKPIDEAELETTLK 118 Query: 119 GW-----RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQ--TLRTLCQWI 171 +K + + ++ L+ G S + P+ + + + Sbjct: 119 ALSGTLGLKKLATIAGDSLVTDSIVETLVQGQFSEADNGALCAALQMPEFSSFDYVLVEL 178 Query: 172 DAHQDYEFS---TDELANEV 188 A + ELA V Sbjct: 179 HASAQSAGTEWQAKELAAVV 198 >UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR family n=17 Tax=Bacteria RepID=Q1AVR6_RUBXD Length = 220 Score = 169 bits (429), Expect = 8e-41, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 82/203 (40%), Gaps = 10/203 (4%) Query: 3 NVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 V+I++D A++ E R + G + G A+ +A E + + +++L+D+ M + Sbjct: 6 RVMIVEDQALMREGLRTLLDLEEGVEVVGEAADGVEALERLPGA--RPEVVLVDVRMPRM 63 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +G+ L+ L + I++++ D + L G Y++K + A+ + Sbjct: 64 DGIQLIERLGREHPEVAAIILTTFDDDEYVFRGLRAGARGYILKDTPSEELAAAIEKVHR 123 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 + L+ + + S P+ GL+ + + L S Sbjct: 124 GEAVLDGPITLK---VISELGRLSKGPAGPQPGSGGLSEREMEVLRLVA-----SGASNR 175 Query: 183 ELANEVNISRVSCRKYLIWLVNC 205 E+A + I+ + + ++ ++ Sbjct: 176 EIARALYITEGTVKNHISSILRK 198 >UniRef50_Q5WBT1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WBT1_BACSK Length = 252 Score = 169 bits (428), Expect = 8e-41, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 23/234 (9%) Query: 1 MINVLIIDDDAMVAELN-RRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V I++D+ ++ + R G A + +I T D+I+ DI M Sbjct: 1 MLKVAIVEDEPILLKGLLYRVDWLSNDCTVVGAAEDGAEGLNLI--KQTKPDIIITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 ++GL +L + I++S + K ++ GV DYL+KP E L Sbjct: 59 PFKDGLAMLKEAKADH-SFEAIILSGFGEFDYAKQAITIGVHDYLLKPVDMHELEATLQK 117 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 QK A + + + + + L +G + + +I H + Sbjct: 118 LVQKLQAQKSNDH---------LTKQTKVYSHLLDLGRGSHSTYVAEIMDFIKKHYHEKV 168 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 + +NE+ +S VS L + ++ V RYR+ L Sbjct: 169 TLKAASNEIGLSTVS----LNDKLKEKTGYSFNE------LVTRYRLTKAISLL 212 >UniRef50_UPI0001788C36 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C36 Length = 254 Score = 169 bits (428), Expect = 9e-41, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 93/235 (39%), Gaps = 18/235 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVAQ-IPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI +++++D+ ++ + R + + P F+ A+ ++A + +D+++ DI M Sbjct: 1 MIKLMLVEDEDIIRKGIRDLIGRVAPDFEVVYEAAHGKEALTYL--ERNVVDVLITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 ++ +GL ++ L A + +++IS D K +L +G+ DYL+KP F AL Sbjct: 59 REMDGLQMVEKLRIAGHEMPIVIISGYGDFVYAKKALQFGIADYLLKPIDRKDFTVALDK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R + + G+ + + P + +R L I + D + Sbjct: 119 IRLTLNSSN-----------RYAGGTEPHSEADGGPPSSEGRRMIRKLKAHIAENPDGDL 167 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLL 234 LA V+++ YL L Y R ++ + Sbjct: 168 RLQTLAEMVHLNPS----YLSQLFKQEGGGNLSDYIAETRIRRACKLLETTNLKV 218 >UniRef50_C6IWB5 Predicted protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWB5_9BACL Length = 531 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 6/163 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V+IIDD+ + + G++ GTAS+ ++A + + DL+++DI M Sbjct: 1 MFTVMIIDDEPKQRLGLQTLIPWSDLGYEVVGTASSGKEALQSL--EQDVPDLLVVDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL LL + K +V+S AD + ++ YGV YL+KP L Sbjct: 59 PGMDGLQLLQEIRQRGWKVHAVVLSGYADFEYARRAMQYGVEGYLLKPVNKQEMSALLEK 118 Query: 120 WRQKKMALEKHQ---YYDQAELDQLIHGSSSNEQDPRRLPKGL 159 + + + Q Y + + L+ GS ++D +L L Sbjct: 119 LHARLVEQQAQQNKTYTREWLVYSLLSGSLDEKEDLDKLSASL 161 >UniRef50_A9WA66 Response regulator receiver n=2 Tax=Chloroflexus RepID=A9WA66_CHLAA Length = 218 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 79/213 (37%), Gaps = 8/213 (3%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI+DD A++ +++ + G A +A E++ + D++L+D+ M Sbjct: 3 IRVLIVDDQALIRTGIATLLSRKADIEVVGQAGNGREALELVAS--LDPDVVLMDVMMPV 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G++ L + VI++++ D + S+ G YL+K +++ Sbjct: 61 MDGVEATRKLAERGPRPAVIMLTTFHDDERVLQSIAAGARGYLLKDVDHRVLADSIRTVA 120 Query: 122 QKKMALEKHQYYDQA-ELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L L + P + LTP+ L ++ Sbjct: 121 GGGALIHPQIIAQLLPRLASLAPTPVTASSSPSDVTSILTPRERDILRLLA-----QGYT 175 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIH 213 E+ ++ +S + + +L + + Sbjct: 176 NQEIGEQLALSVGTVKNHLSVIFAKLAVRDRTQ 208 >UniRef50_A9KJ95 Two component transcriptional regulator, AraC family n=4 Tax=Clostridiales RepID=A9KJ95_CLOPH Length = 260 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 91/234 (38%), Gaps = 21/234 (8%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VLI +D+ ++ + + G+ G A+ E+ E I + D+++ DI M Sbjct: 1 MLKVLIAEDEDIIRKGLAYTIDWLSIGYVLVGEAANGEEGLEKI--RELKPDVVITDIMM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K NGL+L+ + + ++++S A+ K+++ DYL+KP + +E + Sbjct: 59 PKLNGLELIRQA-SKEVRFKSVILTSYAEFDYAKEAIELKAYDYLMKPVDVDKLKEVMRK 117 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + + Q + + S+ + ++ + + Sbjct: 118 LQDDIKLENEKELLFQQKSQGMDIKLLSSSDSYKNP-------YVKKAIDIMKERYIEKL 170 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 S + ++ E+ +S YL T + + + YR+Q L Sbjct: 171 SIESISEELKVS----SSYLSRKFKEDTGHTYLDF------LNMYRVQQAIRLL 214 >UniRef50_B8I425 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I425_CLOCE Length = 538 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 74/172 (43%), Gaps = 6/172 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLIIDD++++ + + + + + C AS + E+I ++I+ DI M Sbjct: 1 MYKVLIIDDESIIRKGIKNIINWKQLDCEVCADASDGIEGIELI--KKYVPEVIITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+++ + S +I+++ D ++ ++ G D+L+KP + LT Sbjct: 59 PGMDGLEMIKNVKEIVPNSKIIILTGYRDFDYVQKAIKCGAYDFLLKPSKIEELTSVLTN 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSS--NEQDPRRLPKGLTPQTLRTLCQ 169 ++ +K++Y + L + E+ + G+ + Sbjct: 119 AVRELDE-QKNKYNEIERFRMLFEQNIPVLREKLLYDIIYGINTSENEIYEK 169 Score = 41.6 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 11/105 (10%) Query: 130 HQYYDQAELDQLIHGSSSNEQDPRRLPKGLT-PQTLRTLCQWIDAHQDYEFSTDELANEV 188 + EL+ L+ + + LR +I H + + + +E+A + Sbjct: 402 EKTDKAEELNSLLEEVAVRIASKVNSFNNKSIKLILRKAIDYIQEHYNEQVTLNEVAENI 461 Query: 189 NISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 +S Y+ + + + + Y R I L Sbjct: 462 YVSTF----YISRMFKKELGKSFVDYLNDVR------IDKAKELL 496 >UniRef50_C7GGB1 Putative two-component response regulator n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGB1_9FIRM Length = 551 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 10/177 (5%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ + + +D+ ++ E R + Q GF+ G AS E A +I D+++ DI M Sbjct: 8 MLKIFLAEDEIVMREGIRNNIAWQEEGFEFVGEASDGELAYPMI--QKLKPDILITDIRM 65 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L ++ + ++++S + K+++ GV DYL+KP +++ EA+ Sbjct: 66 PFMDGLELSRIVKQELPDTSILILSGYGEFDYAKEAISIGVEDYLLKPVTSAQLLEAIRR 125 Query: 120 WRQKK-----MALEKHQYYDQAEL--DQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQ 169 +K E +Q L +L S E + K Q + + Sbjct: 126 IAEKIYGRRGRQEETKNEKEQKTLTKRRLFRHIVSGEHSFSEVLKEAREQEIELAAE 182 >UniRef50_D2LTH2 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTH2_BACS4 Length = 414 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 9/192 (4%) Query: 1 MI-NVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIY 58 MI +LI+DD+ ++ + + + + GTA +A ++ D +D+IL D+ Sbjct: 1 MILKMLIVDDEPIICKGLHTTIDWRDIDIEVVGTAHDGNEAVTLM--KDQHVDIILTDVC 58 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 M + +GL L + K+ +I+IS + + +L GV DYL+KP + Sbjct: 59 MPEMDGLALSEHIITEYPKAKIIMISGFDEFKYARQALRLGVEDYLLKPVNIDELLTLVK 118 Query: 119 GWRQKKMALEKHQYYDQAELDQ--LIHGSSSNEQDPRRLPKGLT-PQTLRTLCQWID--A 173 ++ + +K + + + ++H + K LT Q R + + Sbjct: 119 NIKKVIIEDKKEEIQKEKMITSQWVLHYLFNAPLSLEMKHKSLTNAQHYRIVVSVMKDYD 178 Query: 174 HQDYEFSTDELA 185 + +ST E+A Sbjct: 179 QKMRHYSTKEIA 190 >UniRef50_C5EE52 Two-component response regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EE52_9FIRM Length = 529 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 79/189 (41%), Gaps = 14/189 (7%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DDDA++ ++ + + G + G A ++A ++ + L+L DI M Sbjct: 1 MYRVLIADDDAIIRRGLKKTIDWESYGMEIVGVACDGQEALSML--KELAPHLLLTDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + +G++L+ VI++++ D K+++ + DYL+KP E++ Sbjct: 59 PQMSGIELMKEARILYPDIQVILLTAYEDFEYAKEAIKHKACDYLLKPLAREELLESVLN 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIH-----------GSSSNEQDPRRLPKGLTPQTLRTLC 168 +++ + + + + L G + E+ + L + + L L Sbjct: 119 TKKQFESRMRDTHRKNKSIPLLSRQFINDLMAGYYGKARIEEAIQELGLKIYKENLIALD 178 Query: 169 QWIDAHQDY 177 I + D Sbjct: 179 LLIVDYYDR 187 >UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=Q1J0X7_DEIGD Length = 228 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 85/217 (39%), Gaps = 17/217 (7%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +L++DD +V + R + + G A + E+A + D+IL+D+ M Sbjct: 15 ITLLLVDDHPVVRKGTRELLEGEADLRVVGEAESGEEAI--LKARQLMPDVILMDVSMPG 72 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG++ + R ++V++S D A + L G YL+K A+ Sbjct: 73 MNGIEATRAIKAERPGVGILVLTSYDDDAYVFALLEAGAAGYLLKNASEDELLGAVRAVA 132 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + AL + + + S Q P L+P+ L L + Sbjct: 133 AGESALHP-------AVARKVLERFSTHQTPTPPEDALSPRELEVLRVAATGR-----TN 180 Query: 182 DELANEVNISRVSCRKYLIWLVNC---HILFTSIHYG 215 E+A +++IS + + +L + + ++ YG Sbjct: 181 KEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLYG 217 >UniRef50_C7GHF1 Putative two-component response regulator n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GHF1_9FIRM Length = 517 Score = 167 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 10/188 (5%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DD++++ E + + G+ G A+ E A + I D++LLDI M Sbjct: 1 MYRVLIADDESIIREGIKCLFDWESLGYTIAGEAANGETAYQQILA--LQPDIVLLDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 GLD++ VI++S +D ++++ YGV YL KP EE L Sbjct: 59 SGMLGLDVIREARAQGFTGKVIILSGYSDFKYAQEAIRYGVQYYLTKPIDEDELEEILRS 118 Query: 120 WRQKKMA----LEKHQYYDQAELDQLIHGSSSNEQDPRRLPK---GLTPQTLRTLCQWID 172 ++ ++Y + + +I +N+ D + LT T + + Sbjct: 119 IKENLDKAAATANTREHYREKARETIIRDLLTNDIDLSHINTTDLHLTADTYQVVIYEKY 178 Query: 173 AHQDYEFS 180 +H + S Sbjct: 179 SHNTADAS 186 >UniRef50_C0D789 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D789_9CLOT Length = 535 Score = 167 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 3/167 (1%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+N+LI DD+ V +L + V + + TA A E I + D+ + DI M Sbjct: 1 MLNILIADDENKVCQLIKSLVDWEALDMRVIATAENGIDALEKI--RELNPDIAITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L+ + +++ I+IS + ++ YGV YL+KP + + LT Sbjct: 59 PGYDGLELVRLAKETNPRTEFIIISGYRHFEYAQSAIRYGVNSYLLKPIKKDELTDTLTR 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRT 166 +K + Y++ L L + Q +TL+T Sbjct: 119 LGEKLRERTRQLSYEEKVLRTLKSDEETLRQTFLSDLVSRRDKTLKT 165 Score = 44.7 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 4/95 (4%) Query: 135 QAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVS 194 Q D LI +++ RL + + +R Q+I H + +E++ +S Sbjct: 405 QELFDYLIRKITASYDMAARLKRQDENRPVRVAKQYIGEHYASALTLEEVSAVAGLSPA- 463 Query: 195 CRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 YL + T + Y R ++ E Sbjct: 464 ---YLATVFKKDTGMTFLEYVSKVRMDMAKQLLKE 495 >UniRef50_C6D2L5 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2L5_PAESJ Length = 538 Score = 167 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 77/190 (40%), Gaps = 21/190 (11%) Query: 1 MINVLIIDDDAMVAELNR-RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +L++DD+A+V E R R + GF+C +A E I ++L DI M Sbjct: 1 MYTILLVDDEAVVREGIRERIPWEELGFRCVADCENGVQALEEI--ERLRPHIVLTDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L + ++ V++++ D + +L V D+++KP A+ F L Sbjct: 59 PFMDGLALSREVMERYPETKVVILTGYDDFEYAQQALKLKVKDFILKPVTAAEFSAMLHK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 R + ++ + +D RL L ++++ Sbjct: 119 LRLELDEEKRER------------------EDLARLQSQLHESMPLLKERFLERMSTMAL 160 Query: 180 STDELANEVN 189 + E+A+ ++ Sbjct: 161 TEKEIASRLH 170 >UniRef50_C6LL33 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LL33_9FIRM Length = 529 Score = 167 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 8/173 (4%) Query: 1 MINVLIIDDDAMVAELNRRY-VAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V+I DD+ + L + + GTA +A E++ T D+++ DI M Sbjct: 1 MLKVVIADDEERICRLIEALADWRALSMEVVGTAHNGLEACEMV--EKTCPDILITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L+ + + + ++I+IS A + ++ +GV DYL+KP + L Sbjct: 59 PGCSGLELIEKVKKSAEQLEIIIISGYAHFEYAQQAIKFGVGDYLLKPISKAELTATLEK 118 Query: 120 WRQKKMALEKHQYYDQA-----ELDQLIHGSSSNEQDPRRLPKGLTPQTLRTL 167 R + + + + Q ELD E + L+ QTL+ + Sbjct: 119 LRDRILQRQASEQDRQELKRKAELDVRRLREELLEALFLQKDTELSAQTLQEI 171 Score = 41.2 bits (96), Expect = 0.028, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 15/131 (11%) Query: 109 QASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLC 168 + +F + R + Q + + E++ ++ ++ P R+ K Sbjct: 384 KMEKFRQRCGQCRNMEELFACLQDFQRQEIEAMLRKRENDTVRPIRIAK----------- 432 Query: 169 QWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQA 228 ++I H + +E+++ V +S + Y L Y + R + Sbjct: 433 EYIQNHYSEPITLEEVSSAVGLS--TA--YFSTLFKKTEGGGFAKYLIQVRMEQAKSLLR 488 Query: 229 EHYSLLKQYCQ 239 E + + + C+ Sbjct: 489 ETNTPVAEICR 499 >UniRef50_C7II19 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7II19_9CLOT Length = 279 Score = 167 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 93/243 (38%), Gaps = 12/243 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 + +LI+DDD M+ + + CG +A EI D+IL DI M Sbjct: 1 MKLLIVDDDLMIRKGLLSLDWKSIDITLCGAVQNGNEALEI--ARQVKPDIILSDISMPA 58 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ L L VI +S +D K +L GV DY++KP + + R Sbjct: 59 MDGISLSRELLGQNSDCIVIFLSGYSDFKYAKAALSMGVFDYILKPTSPEEIFDCVQRAR 118 Query: 122 QKKMALEKHQ-----YYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD 176 + + + + E+ +++ + + + + + ++I+++ Sbjct: 119 VRILKERSERVSLHIMRTELEVHKMVGNQEIRGCEEVSNSRN-SEGVVDKIMKYIESNYM 177 Query: 177 YEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQ 236 + S L+ E++++ + Y+ ++ +T + R V + + Q Sbjct: 178 NDISLITLSEEIHLNSI----YISRILKRSTGYTFLEIITAVRMVKAAELLRNSGFTIAQ 233 Query: 237 YCQ 239 + Sbjct: 234 VSE 236 >UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAS3_9FIRM Length = 271 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 87/238 (36%), Gaps = 14/238 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQC-CGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI +LI DD+ M E V + + A KA + + DLIL+DI M Sbjct: 1 MIRLLIADDERMEREALADIVMRRFEHEVTVEMAENGRKAADTAVLWEA--DLILMDIEM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGLD + R + VI I++ + +++H G DYL+KP E A+ Sbjct: 59 PGMNGLDAARAVLEQRPECKVIFITAYSLFQYAHEAVHLGACDYLLKPVDPDETEAAIRR 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++ A + AE + + + + ++++ + + Sbjct: 119 AIRQIEAGRRLAELA-AEAPEPETAPEQETEPAGEGESDRNALVMDHVRKYMEDNYMADL 177 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQY 237 S D ++ ++IS YL + + + RI A L + Sbjct: 178 SLDSVSEILHISPA----YLSAQFKKYQKMNFLDC------LTELRINAAKELLADPF 225 >UniRef50_C3PHX2 Two-component system response regulator n=3 Tax=Corynebacterium RepID=C3PHX2_CORA7 Length = 215 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 83/213 (38%), Gaps = 7/213 (3%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI+V+++DD+ + R + + AS + + D D++L+DI M Sbjct: 1 MISVVLVDDEQALRRGIRFILEGAADIEVVAEASNGREGVARVL--DLQPDVVLMDIRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G++ L + V+++++ I D+LH G + +L+K + A+ Sbjct: 59 VMDGIEAAGKLRASAPDIPVVMLTAFDTDEFIVDALHAGAMGFLLKTIEPEGLVLAVRAA 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L + L + + E R +GL+ + + Sbjct: 119 ATGQQLLSPKALKNLLALKRPEPAPAEPEALEARPLEGLSQRENE-----VAQLVAQGLD 173 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIH 213 E+A ++ +S + + ++ +++ +H Sbjct: 174 NQEIAGQLYVSVTTVKTHIKHILDKLGGTNRVH 206 >UniRef50_D2LWA9 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LWA9_BACS4 Length = 525 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 5/160 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL++DD+ V + R + + G+ A E A E+I D+++ DI M Sbjct: 1 MYKVLLVDDEVFVRKGLRSLIEWEKCGYDVVSEADDGEDAFEVI--KQISPDVVITDIKM 58 Query: 60 QKENGLDLLPVLHNA-RCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 +GL+L+ + + I+IS D + + ++ YGVVD+++KP FE LT Sbjct: 59 PIVDGLELIKKVRETLDHDTKFIIISGYNDFSYAQRAVKYGVVDFVLKPIDKEEFEGILT 118 Query: 119 GWRQKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRRLPK 157 ++ + D+ L QLI + K Sbjct: 119 DLHRRLEMERTARKAKDKLYLSQLIVNVFDEAVKEGEISK 158 >UniRef50_A7VPJ2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VPJ2_9CLOT Length = 250 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 31/236 (13%) Query: 4 VLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKE 62 VL+++D+ ++A R + ++ F+ AS E+A I + +++ DI M Sbjct: 8 VLVVEDEKLIARNISRSIQRVNSSFEVVAIASNGEEALAI--TDELLPNVVFTDICMPIM 65 Query: 63 NGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 +GL+L + +++S D A K+++ + V++YL+KP E L + Sbjct: 66 DGLELAKRIREKYDFIVCVILSGHNDFAYAKEAIQHQVMEYLLKPVNDDELSEVLRKIEK 125 Query: 123 KKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTD 182 + Q E + + S ++ L + ++I H Sbjct: 126 NLLTF-------QEEFEMANNTSFQKPENIAEL-----------VEEYIHKHYMELLELG 167 Query: 183 ELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYC 238 E+A + S YL + T Y + YRI L Sbjct: 168 EIAEKFGFSVS----YLTKIFTKFTGKTPSKY------IRDYRISLAKQLLRNPNL 213 >UniRef50_C6JC74 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC74_9FIRM Length = 240 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 92/240 (38%), Gaps = 38/240 (15%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIP-GFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M ++I++D+ + + ++ G + G A + ++I + + ++++ DI M Sbjct: 1 MKKIIIVEDEFRIRNGLSTLINKLDMGCKVIGEAENGFEGLKMISDME--PEVVITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +GL ++ D +++S A+ + + GV+DYL+KP S +E L Sbjct: 59 PKMDGLSMIRQAKEMGASCDFVILSGYAEFEYAQQGIQLGVMDYLLKPASVSDVKELLNK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++K + + +++ +R + I+ + Sbjct: 119 LNEEKEITQGLDRENCSDI-------------------------VREMINVIEESYGMKL 153 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 D +A + +++ +YL L T +Y + + R++ L + Sbjct: 154 QLDAIAEKFHMTP----EYLGNLFAKETGITFSNY------LRQVRMEKAKELLTGTDMK 203 >UniRef50_B2J2N1 Two component transcriptional regulator, LuxR family n=12 Tax=Cyanobacteria RepID=B2J2N1_NOSP7 Length = 232 Score = 166 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 91/212 (42%), Gaps = 9/212 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +LI+DD +++ + + + Q P + G A + A E++ ++ D++L+DI M + Sbjct: 9 IRLLIVDDQSLIRQGLKAMLEQEPDLEVVGDAENGKVALELV--AELQPDVVLMDIRMPE 66 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G ++ + V+V+S+ D + + ++ G YL+K +S +A+ Sbjct: 67 MDGRTATKLIMQSFPNIKVLVLSTFDDDSYLTGAMRAGAKGYLLKDMPSSELADAI---- 122 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + + D+L+ +++ + P + Q + + Sbjct: 123 --RFGHSGYTQFGPGLFDKLLVTEAASASANQNSASS-KPSEITAREQEVLCLIGVGATN 179 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIH 213 E+A ++ I+ + + ++ +++ L Sbjct: 180 REIAQQLYITEGTVKTHVTSILSRLNLKNRSQ 211 >UniRef50_C6J1B9 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1B9_9BACL Length = 528 Score = 166 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 75/187 (40%), Gaps = 21/187 (11%) Query: 2 INVLIIDDDAMVAELNR-RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + VLI+DD+ ++ L R R + GF+ G AS ++A E++ + D+I DIYM Sbjct: 4 LKVLIVDDEHLIRNLIRLRIDWEQEGFEITGEASNAQEALELV--EEQNPDIIFTDIYMP 61 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G++L + ++V+S + + + G+ D+L+KP +AS Sbjct: 62 NMDGIELSRRVLERYPHIKIVVVSGHDEFEYAQQGIKIGIFDFLLKPIRASDLLHVAGNL 121 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 +QK ++L + +++ + S Sbjct: 122 KQKIHEERTRAKEISKMKEELERNLPYLRE------------------RFLFQWLNGALS 163 Query: 181 TDELANE 187 +E+ + Sbjct: 164 REEIVEQ 170 >UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR family n=3 Tax=Clostridia RepID=Q2RJU9_MOOTA Length = 222 Score = 166 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 83/204 (40%), Gaps = 12/204 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +LI DD ++V E R+ + P Q G A+T ++A E+ +I++DI M Sbjct: 7 ITILIADDHSLVREGIRKILELEPDLQVVGEAATGQEAIEM--TRRYQPQVIIMDINMPG 64 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG++ V+ + ++ ++ D I + L GV Y++K A +A+ Sbjct: 65 LNGIEATKVIRQEWPQIAILALTIHDDEEYIIELLRSGVSGYVLKDISAEELVQAVYQVA 124 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + H Q + + P + LT + L H S Sbjct: 125 RGARVI--HPGVAQKVIGCI---QKQKPFTPAPVSIPLTAREREILI-----HVSLGKSN 174 Query: 182 DELANEVNISRVSCRKYLIWLVNC 205 E+A E+ IS + + +L + + Sbjct: 175 REIARELFISEKTVKNHLTHIFHK 198 >UniRef50_C6CWR9 Two component transcriptional regulator, AraC family n=2 Tax=Paenibacillus RepID=C6CWR9_PAESJ Length = 540 Score = 166 bits (422), Expect = 5e-40, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 3 NVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 VL++DD+ + + + ++ G GTA +A E++ + DL+L DI M Sbjct: 4 KVLLVDDEPHITRNLEKVIPWEMLGLTVGGTAKNGVEALELLESE--SFDLVLCDIRMPV 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+L+ + +SD+I++S D A + ++ YGV DY++KP + Sbjct: 62 MDGLELVRHIREKGTESDIIMLSGYQDFAYTRAAIQYGVKDYVLKPIPYDELTGVIARVM 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSN 148 + +K Q +Q ++ ++I +S Sbjct: 122 ANQRQKKKQQSEEQQKIGRMIDLASEK 148 Score = 40.4 bits (94), Expect = 0.051, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 4/119 (3%) Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 ++ + L+ + + +L +I + + K + +++ ++ + + S Sbjct: 388 QEDLLWLKLDRRFGIKDLLSVILQVTKAVAEKSTDKKKQSERSMAEAKSFLGRNLYRDLS 447 Query: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 +E A V +S Y L T I Y R + A+ + Q + Sbjct: 448 VEEAATHVGLSTS----YFSLLFKQTYNETFIEYVTRERMEKAKSLLADTMKSIAQIAK 502 >UniRef50_D1PQY0 DNA-binding response regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQY0_9FIRM Length = 540 Score = 166 bits (422), Expect = 5e-40, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 3/134 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V +++D++ + E R V G++ G A E A ++ D+++ DI M Sbjct: 1 MLRVFLVEDESTIRETLRDTVPWNQVGYEFVGEAGDGEMALPLL--RQVKPDVLITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L ++ + +I++S D + ++ GV YL+KP S + LT Sbjct: 59 PFMDGLELSKLVLQEFPHTKIIILSGYDDFDYARKAIDLGVERYLLKPVTKSTLTQVLTE 118 Query: 120 WRQKKMALEKHQYY 133 ++K + + + Y Sbjct: 119 VKEKIESETEQENY 132 Score = 40.8 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 16/126 (12%) Query: 109 QASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLC 168 ++ + L W+ + A+ L L+ + R + L R Sbjct: 386 DPAQLADGLEDWQLLRQAVSPQ-TLRACLLQILLQALHLRDNASSRQGRSL----FRQAV 440 Query: 169 QWIDAHQ-DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQ 227 +++ H D S +++A E+++S YL + + + T Y V R++ Sbjct: 441 LYLEEHYTDESLSLNQVAREISVSA----NYLSAVFSQEMGMTFTEY------VTGKRME 490 Query: 228 AEHYSL 233 L Sbjct: 491 KAKELL 496 >UniRef50_C0CWH5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CWH5_9CLOT Length = 248 Score = 166 bits (421), Expect = 6e-40, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 22/233 (9%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + ++I DD+ + + + + G Q A+ + + + P+DL+L DI M Sbjct: 1 MKLVIADDEPNIRDSLSQLFPWEELGIQVVFLAANGREVLDYMEM--NPVDLLLADIRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL+L + + VI++S+ AD + +L +GV YL KP + Sbjct: 59 VMDGLELTQAVRRTYPEVPVILLSAFADFEYARTALRFGVSAYLTKPVNYGELMKTFRTV 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 H ++ + Q KG + + + +++ + D + Sbjct: 119 --------AHSAIPPESAPGPAPETTGDGQPVSY--KGYYNEIVTRIQEYVRDNAD---T 165 Query: 181 TDEL--ANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHY 231 + A +S Y+ + + + T Y R ++ E Sbjct: 166 ASLIGAAELTGLSAS----YVSTIFHRCLNQTFSDYLNQTRMEKAVQLLKEGR 214 >UniRef50_C6CTF9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTF9_PAESJ Length = 507 Score = 166 bits (421), Expect = 7e-40, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL++DD+ M+ E R + + G++ TA+ + A + +DLI++DI M Sbjct: 1 MYKVLLVDDEPMIREGLRTLLEWESLGYEVVDTAANGKDALQKC--EQHDLDLIIVDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + NGL+L+ + V+++S AD K ++ + YL+KP E L Sbjct: 59 PEMNGLELIKKIRENGGTMHVLILSGYADFEYAKQAIVQRIDGYLLKPVDEDELMEYLHS 118 Query: 120 WRQ--------KKMALEKHQYYDQAELDQLIHGSSSN 148 R+ ++ L++ Q + +L +L+ S+ Sbjct: 119 LRKELDLEYETRQKRLDERQGNAEDDLKRLLVEGSTG 155 >UniRef50_A9U6E4 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U6E4_PHYPA Length = 563 Score = 166 bits (421), Expect = 7e-40, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 13/200 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I +L++DD ++ E R + + FQ GTA E+A E+ L+L+D+ M Sbjct: 358 IRLLVVDDHPVIRESLRTLLEEQQDFQVVGTAEDGEQAIELC--RQLRPQLVLMDVDMPI 415 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ + + ++++++ D ++L GV YL+K Q E + Sbjct: 416 VDGISASRTIKESWPHIRILILTTFEDTKQALEALRSGVDGYLLKSMQPLELAETIRTVH 475 Query: 122 QKKMALEK---HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 + +E+ H+ + Q E D SS + LTP+ L L Sbjct: 476 RGGTLIEQGMSHKLFAQLEADNSGDDPSSIKASS---AYDLTPRELEILQFV-----SKG 527 Query: 179 FSTDELANEVNISRVSCRKY 198 +A+ +S + R Y Sbjct: 528 LRYKSIASNFYLSDGTVRNY 547 >UniRef50_A6TTZ3 Response regulator receiver protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TTZ3_ALKMQ Length = 245 Score = 166 bits (420), Expect = 7e-40, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 85/237 (35%), Gaps = 28/237 (11%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQC-CGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI +L++DD+ M+ E + + + + AS +A E +LIL+DI M Sbjct: 1 MITLLLVDDENMMKEYIKFII-KEEDMEIAVFEASNGLEAVEK--AKQLQPNLILMDIKM 57 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+ ++ + ++ +++ + +L G DYL+KP F+ + Sbjct: 58 PHMDGLEATEMIKKEVPLTKIVFLTAYDKFDYAQKALRLGAYDYLLKPISPEDFKGLINK 117 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + +Q ++ +++ + KG ++I+ + + Sbjct: 118 IL-------AESHQNQGDV-----QNTTTLAPEDHVIKG--------AKEYIEDNYSEKI 157 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQ 236 ++AN V +S Y Y R + E L + Sbjct: 158 QLKDVANHVGLSPT----YFSKFFKRKTQMNFSIYLNMARIEKAKELMRETTLTLNE 210 >UniRef50_UPI00017899D9 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899D9 Length = 503 Score = 166 bits (420), Expect = 8e-40, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 3/163 (1%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V I+DD+ + E V G + G A +A E + P+D+++ DI M Sbjct: 1 MYKVFIVDDEPFIIEGLVDVVDWSKYGIEVVGHAENGRQALEKMAV--VPVDILITDISM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 GL+L+ VI++S D A +K+ + G+ +YL+KP EE + Sbjct: 59 PVMTGLELIEGARKLNRNLKVIILSGFDDFAYLKEGMRLGIENYLLKPINLKELEETIAS 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQ 162 K + D+ +++ L R P+ L + Sbjct: 119 TTDKMNNSRREMRLDEYDINILRSNILYRWITDRIEPEELEER 161 Score = 44.7 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 10/82 (12%) Query: 152 PRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTS 211 L + ++ + I H + + S L +I V YL L + Sbjct: 391 VDSLNNDVKSPVIQQILNHIQHHYNEDLSLKVLGANYHIHPV----YLGHLFHKETGENF 446 Query: 212 IHYGVTGRPVYRYRIQAEHYSL 233 Y + RYRI+ L Sbjct: 447 TEY------INRYRIERAKELL 462 >UniRef50_C6J482 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J482_9BACL Length = 553 Score = 166 bits (420), Expect = 8e-40, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 60/141 (42%), Gaps = 3/141 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +++ DD+ V E + + G+ TA ++A E++ D+++ DI M Sbjct: 1 MYKLILADDEEDVREGLLGLIDWEGLGYVVQETAENGKEAVELV--EKHAPDVVVTDIQM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGL L + + +I+++ + + ++ G+ +Y++KPF A E L Sbjct: 59 PFMNGLQLSEWIRERYPATKIIILTGYEEFEYAQKAIRLGIDEYVLKPFSAGELAEILRK 118 Query: 120 WRQKKMALEKHQYYDQAELDQ 140 + + + Q + Sbjct: 119 VKLQLDEEVAAKENVQLLTEH 139 >UniRef50_C0ZBD9 Two-component response regulator n=2 Tax=Paenibacillaceae RepID=C0ZBD9_BREBN Length = 215 Score = 166 bits (420), Expect = 9e-40, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 82/212 (38%), Gaps = 13/212 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 VLI DD M R + P F+ G A E+A + DL+L+DI M K Sbjct: 4 YRVLIADDHPMARMAIRSLLDPDPSFEVIGEAQNGEEA--FLLCGQIQPDLVLMDINMPK 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+ + A V+++S + D A + ++ +G YL+K + + L Sbjct: 62 WSGLEATREVKKAYPHIKVVILSVSDDVADLITAIQFGAQGYLLKNLEPDDWINYLHAL- 120 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 L + + +L++ E +P LTP+ + + Sbjct: 121 -----LGEDSELTREMATRLMYRFRQEEATDEMVPAVLTPREREIVMYV-----GAGKTN 170 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIH 213 E++ + I+ + + +L ++ L + Sbjct: 171 REISEALIIAENTVKNHLKNILEKLQLANRVQ 202 >UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT85_9FIRM Length = 405 Score = 166 bits (420), Expect = 9e-40, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQI-PGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI DD+ + + + + ++ C A +A E I D IL+DI M Sbjct: 1 MWKVLIADDEPKIRQGLKSVLEEMKLPITVCAEARNGMEALEKI--EQFQPDFILMDICM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +G+ L L VIVIS + + K ++ GV +YL+KP + A+ Sbjct: 59 PKLSGIQFLEELRKLDKNCPVIVISGFNEFSYAKQAIKLGVSEYLLKPIAEEELQAAVVK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGS 145 ++ K + + + Q+I Sbjct: 119 VTEEIKQKRKSEKFMELVKQQMIQNQ 144 >UniRef50_A7VVZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVZ1_9CLOT Length = 531 Score = 166 bits (420), Expect = 9e-40, Method: Composition-based stats. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DD+ V E +R + Q G G A +A II D D++LLDI M Sbjct: 1 MYKLLIVDDEKQVREGLKRLLPWQDYGITIIGEAINGREALGII--EDQRPDIVLLDIQM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP 107 NGL+L +H + IV+S D A +++++ YG VDYL+KP Sbjct: 59 PVMNGLELAKRIHGQYPECKFIVLSGYNDFARVREAMKYGAVDYLLKP 106 >UniRef50_B5YAV6 Two-component response regulator n=2 Tax=Dictyoglomus RepID=B5YAV6_DICT6 Length = 496 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 VLI DD+ ++ + ++ V GF+ G A +A + + DL ++DI M Sbjct: 3 YKVLIADDEPVIRQGLKKIVNWNALGFKIVGEAEDGVEALDKV--RKLDPDLCVIDIRMP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL+L+ + ++ + +I+++ + + ++ GV Y++KP ++ LT Sbjct: 61 GMDGLELISEIRKSKSEIKIIILTGYPEFEYAQKAISLGVQSYMLKPVDPQILKDELTKI 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRR 154 + LE+ ++ + ++++ + Sbjct: 121 YE---DLERKKFLFEGSKEKILEKLLKGQISLTE 151 >UniRef50_A8RPD4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPD4_9CLOT Length = 532 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 65/145 (44%), Gaps = 3/145 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIP-GFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 + VLI DD+ + L + + + + G A A E++ D+++ DI M Sbjct: 1 MKVLIADDEINIILLIKSLIDRQKTDVEIAGEAGDGITALEMV--RQLKPDVVITDIRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NG+DL+ + + + ++IS ++ + ++ YGV DYL+KP + + L Sbjct: 59 GMNGMDLIRHVREEQIPVEFVIISGYSEFEYARSAIQYGVSDYLLKPIKKDELNDVLAKL 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGS 145 ++ + + Q D+L + Sbjct: 119 ESQRASRREQQMQFNLMEDRLASNN 143 >UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=Proteobacteria RepID=Q09C30_STIAU Length = 213 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 85/197 (43%), Gaps = 11/197 (5%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MIN++++DD A++ E R + P G AS E+A + + + D++L+D+ M Sbjct: 1 MINIVLVDDHALIREGIRSLLEFTPDLHVVGEASDGEEAVKRV--RELSPDVVLMDVRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + GL+ L + + V+++++ + + + ++L GV +L+K + +A+ Sbjct: 59 RMTGLEALRAMRREAPERRVVLLTTFDEDSVVVEALRAGVKGFLLKDVTRDQLADAIRRV 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L AE Q E LP+GLT + L + S Sbjct: 119 ANGETLLPPGV----AERVQRGFTEVPQEFPHAELPEGLTRRELEVMRLIAR-----GLS 169 Query: 181 TDELANEVNISRVSCRK 197 E+A + + + + Sbjct: 170 NREIATVLGTAEGTVKN 186 >UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZVU5_9FIRM Length = 509 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 5/169 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M NVLI+DD+ + E + +++ G + AS ++A +II + D I L+L DI M Sbjct: 1 MTNVLIVDDEKIEREGLKYLLSREEGERNVFEASNGKQALQIIRSED--IQLVLTDIKMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL--- 117 +GL+L +I+ S +D ++++ YGV +Y++KP F + + Sbjct: 59 HMDGLELSRRAKEENPALQIIIFSGYSDFTFAQEAIRYGVTEYILKPVNPEDFHKVIQKA 118 Query: 118 TGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRT 166 +++ E + ++ L Q + L K L Sbjct: 119 EKVIEQRKKKESREIKEKNFLQQYFLQNYLYSGKLETLEKAKDMINLEK 167 Score = 43.9 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 38/124 (30%), Gaps = 19/124 (15%) Query: 110 ASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQ 169 R E + + + E+ ++ + + + + + Sbjct: 357 ERRLEHEIERLYNCRNIM---------EILEVTEDNIKEYEAFLDRSMSSSRNEVAAVKN 407 Query: 170 WIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229 +I H + + + + LA +V +S YL ++ Y + +R++ Sbjct: 408 YIYQHYEEDLNLEMLAEKVYLSSG----YLSFIFKKETGMNLNRY------IRVFRMEKA 457 Query: 230 HYSL 233 L Sbjct: 458 KELL 461 >UniRef50_C1A9U5 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9U5_GEMAT Length = 223 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 13/204 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI DD A+V E R + PG + G AS A ++ D+++LDI M + Sbjct: 11 IRVLIADDHALVREGLRYVLDADPGIEVVGEASNGRTAVDLAL--QHVPDVVVLDITMPE 68 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 E+GL L A + V+++S +++ + G YL+K A+ Sbjct: 69 ESGLKAAARLREALPDTRVLLLSMHDQGEYVREGMRIGTHGYLLKDSAGEELRAAIRAVH 128 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ A + +L +E P LTP+ L + Sbjct: 129 A------GGTFFSPAVVRRLTSTEVVSEGAPAAQLDLLTPRERDVLAGVAR-----GLTN 177 Query: 182 DELANEVNISRVSCRKYLIWLVNC 205 +A E+ ISR + + L+ Sbjct: 178 KAIAAELGISRRTVEAHRESLMRK 201 >UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 Tax=Bacteria RepID=Q3Z8L1_DEHE1 Length = 224 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 94/218 (43%), Gaps = 14/218 (6%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL+ DD +V E R + + G G AS +A E+ + D++++DI M Sbjct: 6 MIKVLLADDHVIVREGTRELIQRESGMMVVGEASDGVEAVEM--SMKVHPDVVVMDIAMP 63 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 + NG++ + + ++++++ I L G +L+K + ++ EA+ Sbjct: 64 RLNGIEATKQIKQLLPTTAILILTAYESEQYILAILEAGAASFLLKNVKGTQLLEAIRAV 123 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + L+ + +DQLI+ ++ E+ P LT + + L S Sbjct: 124 YAGESVLQP--STTRRVIDQLINKATKTEEVSAVNP--LTDREIEVLKMAAR-----GVS 174 Query: 181 TDELANEVNISRVSCRKYLIWLVNC---HILFTSIHYG 215 ++A+++ +S + + +L + +I YG Sbjct: 175 NKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYG 212 >UniRef50_A6TTD1 Response regulator receiver protein n=3 Tax=Firmicutes RepID=A6TTD1_ALKMQ Length = 263 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 106/243 (43%), Gaps = 27/243 (11%) Query: 1 MI---NVLIIDDDAMVAELNRRYV--AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILL 55 M+ +LI+DD+ + ++ + ++ A++ ++A +++ + L++ Sbjct: 1 MMHSKTILIVDDEPRTRQGLKKTIGIWSEGKYEII-CAASAKEAIDVL--EQQRVHLLIT 57 Query: 56 DIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEE 115 DI M + +GL +L L+ + K VI++S ++ + ++ GVV+YL+KP + E Sbjct: 58 DICMPETSGLKMLEQLNMKKHKLVVIILSGFSEFDYAQQAIRLGVVNYLLKPINKHKLIE 117 Query: 116 ALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 ++ + + E+ ++ +L++ S N + ++ +++D + Sbjct: 118 SVEKAMEVEANQERVGKIEKLVDGKLLNIRSENYRIQSP---------IKEALRFVDENG 168 Query: 176 DYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLK 235 + S ++AN V+++ YL L T Y + R R++ L+ Sbjct: 169 RGQLSLRDVANHVHLN----SSYLSVLFKEQTNLTFSEY------MTRRRLENAKNLLMS 218 Query: 236 QYC 238 Sbjct: 219 TDL 221 >UniRef50_B0G4U8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0G4U8_9FIRM Length = 540 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 88/220 (40%), Gaps = 28/220 (12%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V + +D+ ++ E R + + G++ G A+ E A +I T D+++ DI M Sbjct: 1 MLKVFLAEDETLIREGLRDNIPWEQYGYRFVGEAADGEMALPLI--RKTKPDVLITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L ++ ++ +I+IS D ++++ GV YL+KP + L Sbjct: 59 PFMDGLSLSRIVREELPRTKIIIISGYDDFEYAREAISIGVDQYLLKPVTRMNLRKVLQE 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++K Q +Q + ++ + R + + + + Sbjct: 119 LKEKI-----EQDAEQEDYQTMLQNEMHEYEQFSRRI-------------FFEKVLEGKM 160 Query: 180 STDEL---ANEVNISRVSCRKY---LIWLVNCHILFTSIH 213 S E+ A ++ + ++ Y I+L + + Sbjct: 161 SVKEIYDEAAKLEM-ELTASSYNLIFIYLQEHRKNQSELE 199 >UniRef50_C0B6P7 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B6P7_9FIRM Length = 295 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 68/150 (45%), Gaps = 3/150 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI V +++D+ ++ + + ++ G+ G AS E A +I + D+++ DI M Sbjct: 1 MIKVFLVEDEIIIRNGIKNSINWEMHGYDFVGEASDGELALPMIL--EKKPDILITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L + + ++++S + K ++ GV DYL+KP + + +A+ Sbjct: 59 PFMDGLELSEQVKKVLPATKIMILSGYNEFDYAKMAIKIGVTDYLLKPISSEKLLDAVNK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNE 149 ++ + + ++ S + Sbjct: 119 VAEEIRKEQSEKEQMNQYAREMQENKESEK 148 >UniRef50_UPI0001C364DA two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C364DA Length = 518 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 81/218 (37%), Gaps = 7/218 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DD+ + E ++ + G GTA + E I N D+++ DI M Sbjct: 1 MYKLLIVDDEDVEREGMADFIQWEKYGISLAGTAWNGVEGYEEIQNQ--MPDIVITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NG++L+ IV+S + ++ GV Y++KP ++ E + Sbjct: 59 PVMNGIELIRKTREDFPDIVFIVLSGYGEYEYTSRAMELGVRHYILKPCDEAKIVEVIGK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++ E+ + + E+D + ++ + + + Sbjct: 119 VTEELKVREEKK---RKEVDMRTQVKRLAPRAREQMFRNVLLNREDIHKDFEAYLGGCGI 175 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVT 217 + E+ + + + YL V +I+ + G Sbjct: 176 FSKEV-FLLAFHKETWFDYLEQFVVSNIITELLGSGHV 212 >UniRef50_C5ENT8 Two component transcriptional regulator n=2 Tax=Clostridiales RepID=C5ENT8_9FIRM Length = 529 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 15/177 (8%) Query: 1 MINVLIIDDDAMVAELNRRY-VAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V+I DD+ ++ L + G + A +A E+I + + D+++ DI M Sbjct: 1 MLKVIIADDERLICRLVQALADWDSLGMEVTALAENGLEALELIKSRE--PDILITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L+ +V++IS A + ++ YG YL+KP + + E L Sbjct: 59 PGCDGLELIRSAKELMPDLEVVIISGYAHFEYAQKAMKYGAGYYLLKPIKQTELMETLEK 118 Query: 120 WRQK-------KMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQ 169 R+K + A+ + Q +L ++ L L T L Sbjct: 119 IREKCEARQETRTAIHRQHQNSQEDLSRI-----RESLMKDLLSGSLNDLTAENLRN 170 Score = 44.3 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 4/100 (4%) Query: 140 QLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYL 199 QL + + R L + +R Q++ H + + + ++ S Y Sbjct: 404 QLKQIQARLLSEARDLRSNEAARPIRIAKQYVMQHYQEPITLETVCEDIGFSV----NYF 459 Query: 200 IWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 L Y R + E + + C+ Sbjct: 460 STLFKRETGEGFAKYLTRVRMEEAKTLLRETSLPVAEICE 499 >UniRef50_D1XHI5 Two component transcriptional regulator, LuxR family n=4 Tax=Streptomyces RepID=D1XHI5_9ACTO Length = 222 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 89/202 (44%), Gaps = 13/202 (6%) Query: 5 LIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKENG 64 ++ DD A+V E + +PG + G A ++A ++ ++ D++L+D+ M + +G Sbjct: 2 VVADDQAIVREGIVMLLGLLPGIEVVGAAKDGDEAVALV--AEKAPDVVLMDLRMPRCDG 59 Query: 65 LDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 ++ + ++ V+V+++ AD ++ +L G YL K + +A+ + Sbjct: 60 VEATRRIRKEHPRTQVVVLTTFADDDSLFTALQAGARGYLTKDARGEEIVQAIDAVMSGE 119 Query: 125 MALEKHQYYDQAELDQLIHGSSSNEQD---PRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 L Q L + + GS + P LP GLTP+ L S Sbjct: 120 AGLSPKV---QRRLLERVTGSETVPAPCALPSELPDGLTPREAEVLVLIA-----EGLSN 171 Query: 182 DELANEVNISRVSCRKYLIWLV 203 E+A +++S + + ++ L Sbjct: 172 REIARALHVSAATVKTHINNLF 193 >UniRef50_A7VQW7 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQW7_9CLOT Length = 508 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 13/178 (7%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +VL++DD+ + R+ V Q GF + +A E++ P DL++LDI M Sbjct: 1 MRSVLLVDDEYFIRVRVRKCVDWQALGFDMVADCESGREALELL--EAHPFDLVVLDISM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L + S +++++ K +L +GV+DY++KP E+ + Sbjct: 59 PIMDGLSLCREIRARGYDSQLVILTGYDKFEYAKSALSFGVLDYILKPIDEEEMEQVVKK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGL-------TPQTLRTLCQW 170 ++ +++ + + + L+ S + + + P+T LCQ+ Sbjct: 119 ACER---IDRKESLEHQRAEHLLLKSQAEQMKSDIFFSSILTDSFLERPETAEMLCQY 173 >UniRef50_UPI0001C363ED two component AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C363ED Length = 487 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 7/151 (4%) Query: 1 MINVLIIDDDAMVAELN-RRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +LI+DD+ + R + GF+ G A E+A +I +T D++L DI M Sbjct: 77 MYQLLIVDDEEDIRRGMARGIPWKEWGFEVAGQAENGEEAVRMIG--ETHPDVVLSDIRM 134 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K +G++L+ LH + +I++S D + ++ V +YL+KP FE Sbjct: 135 PKMDGIELMQYLHENNPEIKIIILSGYNDVEYLNMAIRNQVTEYLLKPTDIDEFETLFHR 194 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQ 150 + K + + EL+ L + N++ Sbjct: 195 LKTKLD----EEGMKRRELESLKVSAMQNKE 221 >UniRef50_C6D165 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D165_PAESJ Length = 535 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI +LI+DD+ + + R + + G + G A+ + E + + DI M Sbjct: 1 MITLLIVDDEPNIRKGIRTSIDWEDYGIEVVGEAADGVEGLEKAL--KLKPHITVTDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L L N + ++++S D + K++L GV DYL+KP A + + Sbjct: 59 PLMDGLELSRHLKNQLPDTRIVILSGYEDFSFAKEALAIGVQDYLLKPVGAEELVDLMLK 118 Query: 120 WRQKKMALEKHQYYDQAE 137 ++ E + Q+ Sbjct: 119 LSEEIKLAEADKRNRQSL 136 Score = 40.4 bits (94), Expect = 0.046, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 14/112 (12%) Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 ++ + + D L S +++ + KG+ ++T ++++ + + S Sbjct: 396 REMERFDTLGDLRKWMNDVLHRLSELVQENKNQKFKGV----IKTALRYMEENYNRAVSL 451 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 ++A V ++ YL + I + + + RYRI+ L Sbjct: 452 ADVAAIVYVTP----NYLSRIFKEEIGVNFVEW------LNRYRIEKAKLLL 493 >UniRef50_A6LST7 Response regulator receiver protein n=4 Tax=Clostridium RepID=A6LST7_CLOB8 Length = 517 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 18/202 (8%) Query: 3 NVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +L++DD+ ++ + + + GFQ G AS E+A E+I D+I+ D+ M + Sbjct: 6 KILVVDDEFIMRQGITHMIDWEKEGFQIIGQASNGEEALEMI--KKDTPDIIISDVVMPQ 63 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP-FQASRFEEALTG- 119 NG++L + K +I++SS +D +K S G VDY++KP S L Sbjct: 64 INGIELAKFVQGKYPKIRIIILSSYSDFEYVKSSFQNGAVDYILKPSLNPSELLSTLKKI 123 Query: 120 -WRQKKMALEKHQ-YYDQAELDQLIHGSSSNEQ---------DPRRLPKGLTPQTLRTLC 168 + K+ LE + L++LI G + GL + + Sbjct: 124 SIKMKRNTLEGDSLSLTNSALNRLISGFDNYPDFNYFDTIFTFQSFCLFGLNAK--KIYD 181 Query: 169 QWIDAHQDYEFSTDELANEVNI 190 + H+ +F+ E+ E ++ Sbjct: 182 NYSKRHEIIDFTISEIGKEFSL 203 >UniRef50_C0GF31 Two component transcriptional regulator, LuxR family n=3 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GF31_9FIRM Length = 218 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 86/205 (41%), Gaps = 14/205 (6%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 M+ V+I+DD A+V + + F A + E+A E+ +T D++++D+ M Sbjct: 1 MVRVMIVDDHAVVRVGLKSLIELHGDFSVIAEAGSGEEAVEV--ARETVPDVVVMDVRMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+D + A + VI+++S AD I ++ G Y++K ++ EA+ Sbjct: 59 GMSGIDACRAIVEAVPDTKVIMLTSYADDEAIYSAILAGASGYVLKQTDNAKLLEAIEQA 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + L+ H + + + L+ + L + + Sbjct: 119 ARNESLLDPH-------VTGKVLKRMKEIAAATQYEAKLSETEKKILVLIAEGKR----- 166 Query: 181 TDELANEVNISRVSCRKYLIWLVNC 205 E+A E+ ++ + R Y+ + + Sbjct: 167 NKEIAEELFLAEKTVRNYVSKIFSK 191 >UniRef50_UPI0001C368CA hypothetical protein ChatD1_01271 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C368CA Length = 267 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 84/223 (37%), Gaps = 17/223 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M ++L+++D++++ R ++ G A E+ E + IDLIL DI M Sbjct: 9 MYHLLVVEDESLIRRGIRAFIDFDRLGIDEFFEAENGEEGLEAV--RSHRIDLILADINM 66 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K NGL+ + + +++ ++ GV DY +KP ++ L Sbjct: 67 PKMNGLEFCRLAKELDPSIKIAILTGYDYLDYAIRAIKIGVDDYALKPLSRDDVQKLLFH 126 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +KK + QA +D+L + + ++ GL Q L + + D F Sbjct: 127 LVEKKKEADNFAAVRQA-VDKLAGNAGTEDES------GLRAQMAGILEEHL---SDSHF 176 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVY 222 S +A E+ + YL L Y R Sbjct: 177 SLSTMAAELGYNIS----YLSTLFKRCFGENFRDYLFDLRLER 215 >UniRef50_D1VBH1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=D1VBH1_9ACTO Length = 248 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 11/204 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VLI DD+ +V R V P A+ A + D++L+DI M Sbjct: 26 IRVLIADDEGLVRAGFRALVEATPDLTVVAEAADGVAAVR--ESRRLRPDVVLMDIRMPV 83 Query: 62 ENGLDLLPVLHNA--RCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NGL+ ++ R ++V+++ D + ++L G +++K Q A+ Sbjct: 84 MNGLEATRLIAADAVRPGPGILVVTTFDDDEYVFEALRAGAAGFILKDTQPENLLAAIRT 143 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 L +LI P GL TL + + + Sbjct: 144 VAAGDALLAPGVTR------RLIAAFVRVPAPPASPLTGL-ASTLTDRERAVLTQIANGY 196 Query: 180 STDELANEVNISRVSCRKYLIWLV 203 S E+A + +S + + ++ L+ Sbjct: 197 SNAEIAQALYVSVSTVKTHVGHLL 220 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 5/143 (3%) Query: 1 MI--NVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDI 57 M+ VLI DD+A++ E R + + A E+A E+ +D++ +D+ Sbjct: 1 MMVWKVLIADDEAIIREGIRESIDWNEFNMEVVAEAEDGEEALELAL--RHRVDVLFVDL 58 Query: 58 YMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 M +GL L+ +IVI+ + + ++++ V DYL+KP R E + Sbjct: 59 SMPIMDGLTLMKYAREKLPNCHMIVITGYDEFSYAQEAIRLQVDDYLLKPTDPQRLREVV 118 Query: 118 TGWRQKKMALEKHQYYDQAELDQ 140 ++K +K + Y + +Q Sbjct: 119 AKVKEKLEQEQKEKQYRELLTNQ 141 >UniRef50_Q2BFH4 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BFH4_9BACI Length = 515 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 3/163 (1%) Query: 3 NVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 +LI+DD+ M+ + + + G A E+A + +D+++ DI M Sbjct: 8 KMLIVDDEPMICRGLAYTIPWEEHQIEVAGLAHDGEEAMNKVK-ELNGVDIVITDIRMPN 66 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 ++GLDL L ++ +I+IS + + ++ GV DYL+KP E Sbjct: 67 KDGLDLAAFLKERYPQTRIIMISGYDEFKYAQKAIQLGVEDYLLKPVNIDELLEVAQKIT 126 Query: 122 QKKMALE-KHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQT 163 ++ + + + ++Q L LI+ + L T Sbjct: 127 KEIHQRQAERRQHEQIRLRNLIYHHVFDYPTDETAGNDLLETT 169 >UniRef50_C6JCU5 Two component transcriptional regulator n=2 Tax=Ruminococcus RepID=C6JCU5_9FIRM Length = 539 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 84/192 (43%), Gaps = 15/192 (7%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M +L++DD+ +V + R + + + G +A E + +D++L DI M Sbjct: 1 MYKILLVDDEILVRDAIRENIDWKSLDCELVGDCENGRQAVEFV--QSHKVDVVLTDICM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +G++L LH+ +++ S + K ++ Y V +Y++KP A + L Sbjct: 59 PYMDGMELSEFLHDNYPDILIVIFSGFGEFEYAKKAIRYNVSEYMLKPVTAMELTKVLRN 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 ++K + +K Q +++ L Q + K + + L ++ +D + Sbjct: 119 MKEKLDSRKKE----QKKMESL-------SQTSKDYHKNVDVIRSKALETLVNCTRDVQV 167 Query: 180 STDELANEVNIS 191 S EL ++ IS Sbjct: 168 SLLEL-KKLGIS 178 >UniRef50_C0CWR9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CWR9_9CLOT Length = 256 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 84/235 (35%), Gaps = 14/235 (5%) Query: 1 MINVLIIDDDAMVAELNR-RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V I+DD + + G G+A EKA E I + D+++ DI M Sbjct: 1 MYQVYIVDDAVLTRKALVMTMPWDQWGCVVVGSADDGEKAFEDI--REMEPDIVITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 GL+L+ +S I+IS + K +L V+DY++KP A+ Sbjct: 59 VHVGGLELIGRCRAQGIRSQFIIISGYNEFEYAKAALRMEVLDYILKPIDDEELHGAVEK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 Q+ + S K + LR +++ A+ E Sbjct: 119 AVQRIGESRAMMA------EHREQDGESRSLLLEYDEKNINA-YLRRALEYVQANYGREL 171 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLL 234 S ++A+ ++IS YL L + T + Y R + + + Sbjct: 172 SIRDVASYLSISES----YLAKLFKVELKITFLEYLTRVRMRRAMELMRDKNMPI 222 >UniRef50_C6BTX3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BTX3_DESAD Length = 217 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 12/212 (5%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL++DD +V R ++ + G A+ ++A E+ ++ D+IL+D+ M Sbjct: 5 IKVLLVDDHDIVRIGVRSFLGSFDDIKVVGEAANGQEAVEM--TAELSPDIILMDMLMPV 62 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ + + + + +I ++S A + ++ G + YL+K EA+ Sbjct: 63 MDGIQAIREIRDRKLPGRIIALTSFATDDKLFPAIKAGAMGYLLKDSTPDELLEAIRRVH 122 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + +L L S E P LTP+ L TL S Sbjct: 123 RGEPSLAPDIARK-----VLSELSQPGEDSETPTPDPLTPRELDTLKLVAKGK-----SN 172 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIH 213 +A E+ +S + R ++ +++ L + Sbjct: 173 KAIAEEMFVSEATVRTHMTSILSKLHLANRVE 204 >UniRef50_C6D6B5 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6B5_PAESJ Length = 542 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPG-FQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M N+LI+DD+A+ R+ + G ++ G A +A E++ D++L DI M Sbjct: 1 MPNILIVDDEAIFRRGLRKMIESSSGSWEVAGEAKDGYEALEMV--ESLKPDVLLTDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + +GL L+ + K VIV+S + ++ SL +GV DYL+KP + + L Sbjct: 59 PRMDGLQLIQIAKERFPKLLVIVLSGFDEFTYLQQSLRHGVRDYLMKPVEREELFKTLGK 118 Query: 120 WRQKKMALEKH--QYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWI 171 + L++ + Y D I +E L KG +T L I Sbjct: 119 LESELAKLQQQVPELYTAEPADARIIRQHVSEHLVAGLLKGYVNETDLALLARI 172 Score = 42.7 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 29/101 (28%), Gaps = 10/101 (9%) Query: 136 AELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSC 195 +D + K + + ++++ H S ++A +V ++ Sbjct: 409 ELIDCCSAYLEKLAECIANGQKNADHDPIEKVIRYVNQHYQEPLSLTQVAEKVYLNPA-- 466 Query: 196 RKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQ 236 YL L + + Y R+ L+ Sbjct: 467 --YLSTLFKQRTGSSLVEYWT------ELRVSEAKRRLVSS 499 >UniRef50_B0NES4 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NES4_EUBSP Length = 509 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 6/181 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ +LI+DD+ ++ E + G Q GTA +A +I + D++L DI M Sbjct: 1 MLKLLIVDDEKIIRETMAGLIDWNSLGIQLIGTARDGIEAYNMILDE--YPDIVLTDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GLDL+ +H + I++S + K ++ YGV YL+KP + E+L Sbjct: 59 PGLSGLDLIQKIHGINKDTHFIILSGYGEFEYAKKAMQYGVKHYLLKPCNEEQIIESLQD 118 Query: 120 W-RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 + L Q + + I+ + L L Q T I + Sbjct: 119 VIKDYTNYLATRGETPQTLISRNINQNLMVGIINDSL--SLEAQEADTGISQIACNYKQY 176 Query: 179 F 179 Sbjct: 177 L 177 >UniRef50_C5EPF6 Two component transcriptional regulator n=4 Tax=Clostridiales RepID=C5EPF6_9FIRM Length = 550 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 3/151 (1%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI V +++D+ ++ + + + G G AS E A +I D+++ DI M Sbjct: 9 MIKVFLVEDEVVMRNGIKNNIPWEKEGLMFAGEASDGELAYPMI--KKAQPDILITDIRM 66 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L ++ K +I++S + K ++H GV DYL+KP AS+ EA+ Sbjct: 67 PFMDGLELSELVKKEFPKIKIIILSGYNEFDYAKQAIHIGVTDYLLKPITASKLLEAVKK 126 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQ 150 + + + ++ + Q Sbjct: 127 VADVIEKEREEEGMLERYRLEMAENTVLERQ 157 Score = 41.2 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 11/102 (10%) Query: 139 DQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQD-YEFSTDELANEVNISRVSCRK 197 + LI Q L +I + E S + +A VNIS Sbjct: 420 ESLIRLFEGTMLLRDSQTASKYSQVLEEARAFIRENYAKEEISLNTVAARVNISPS---- 475 Query: 198 YLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ 239 Y + + + T + Y R L+ + Sbjct: 476 YFSSIFSQEMGVTFVEYLTGVRMER------AKELLMCSNMK 511 >UniRef50_A3DFT1 Two component transcriptional regulator, AraC family n=5 Tax=Clostridiales RepID=A3DFT1_CLOTH Length = 259 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 87/236 (36%), Gaps = 23/236 (9%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI++D+ ++ + G A + E I D+++ DI M Sbjct: 1 MNKVLIVEDEDIMRKGLMFMPKWHEVDCIVVGEAVNGQDGLEKI--QKYRPDIVIADINM 58 Query: 60 QKENGLDLLPV-LHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 +GL++L + + I++S + + + GV +YL+KP S+ EA+ Sbjct: 59 PVMDGLEMLEKSIREYGYDA--IIVSGYGEFEYARRGISLGVTEYLLKPIDYSKLYEAIR 116 Query: 119 GWRQKKMALEK-HQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDY 177 + K+ A Q + ++ G ++ + + + Q I + Sbjct: 117 KIQAKRNADTNIKNAIRQIDAEKKKLGILEYKERKTG------NRYVDFMIQTIHDNYHT 170 Query: 178 EFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSL 233 + +++ + +S YL +T Y + RYRIQ L Sbjct: 171 RLALTDISEQCRMSCT----YLNVKFKNETGYTFNDY------LNRYRIQKAVDLL 216 >UniRef50_A8RLJ5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RLJ5_9CLOT Length = 257 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 79/223 (35%), Gaps = 17/223 (7%) Query: 1 MINVLIIDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M N+L++DD++++ R ++ G A E A +II S +DLIL DI M Sbjct: 1 MYNLLVVDDESILRRGIRAFIDFDGLGIGEYFEAENGEGALKIIETSQ--VDLILADINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 K NGL+ + +++ ++ GV DY +KP + ++ L Sbjct: 59 PKMNGLEFCRQAKERDPAVKIAILTGYDYLDYAIRAIKIGVDDYALKPLSRNDVQKLLFR 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +KK E QA G+ Q L Q + D F Sbjct: 119 LIEKKKDAEGFAAVRQAV-------GQLARIAGSDSDAGVKGQLADVLEQHL---ADPGF 168 Query: 180 STDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVY 222 S +A ++ S YL L Y + R Sbjct: 169 SLGAMAEQLGYSLS----YLSTLFKKTFGENFRDYLLDLRLER 207 >UniRef50_Q0SR92 DNA-binding response regulator, AraC family n=10 Tax=Clostridium RepID=Q0SR92_CLOPS Length = 507 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M V++ DD+ ++ + + + G + AS ++A + + P+D++L DI M Sbjct: 1 MYKVMLADDENLILQGLENIIEWEELGLEIVNKASNGQEAIDKF--KENPVDIVLTDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 + GL+LL L I++S D + K ++ GV +Y++KP E+ L Sbjct: 59 PQVTGLELLKELKKINSDVKFIILSGYDDFSYAKKAIELGVENYILKPIDEEELEKTLKN 118 Query: 120 WRQKKMALEKHQYYD 134 K ++ Sbjct: 119 TINKIKQEKEENKSS 133 >UniRef50_A9KRS1 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRS1_CLOPH Length = 548 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 4/148 (2%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VL++DD+ + + + GF G A+ ++A + T +DLI+ DI M Sbjct: 23 MLRVLVVDDEPYIKQGLAMLINWMAEGFTIIGEAANGKEAIRFL--QKTKVDLIIADIKM 80 Query: 60 QKENGLDLLPVLH-NARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 + NG++LL + + I++S D + ++ + DYL+KP Q E L Sbjct: 81 PEMNGIELLEYIKKEKLSDASYIILSGYYDFQYARSAIQHNCCDYLLKPVQKDELLEVLR 140 Query: 119 GWRQKKMALEKHQYYDQAELDQLIHGSS 146 QK L Q ++ + L + Sbjct: 141 RVSQKSKELNNRQIENREKERALFDRNL 168 >UniRef50_Q9KB26 BH2109 protein n=1 Tax=Bacillus halodurans RepID=Q9KB26_BACHD Length = 525 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 5/157 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VL+ DD+ V + + + G++ A E A +++ + DL++ DI M Sbjct: 1 MYKVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLV--QEIKPDLVITDIRM 58 Query: 60 QKENGLDLLPVLHNARC-KSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 +GL L+ ++ + I+IS D + + ++ +G VD+++KP E AL Sbjct: 59 PVFDGLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALI 118 Query: 119 GWRQKKMALEKHQYYDQA-ELDQLIHGSSSNEQDPRR 154 + + LDQ+ S + Sbjct: 119 KLAATLDQEKATNSDQEKVLLDQIFIHSLGENKKENE 155 >UniRef50_A5ZA57 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5ZA57_9FIRM Length = 516 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 1 MINVLIIDDDAMVAELNRR-YVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+NVL++DD+ + L R+ Y + GF G A++ E A E I +D+++ DI M Sbjct: 1 MLNVLLVDDEKLERVLIRKGYNWEENGFNIVGEAASGEDALEYINY--HNVDIVITDINM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L K V++++ + + ++ GV ++L+KP E +T Sbjct: 59 PGMDGLQFTEKLLQKNPKCRVVIVTGFREFEYARKAIKLGVDEFLLKPVNIKEISEVMTK 118 Query: 120 WRQKKMALEKHQY 132 + + + + + Sbjct: 119 IKTEIAKVNEEES 131 >UniRef50_UPI0001C35A14 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35A14 Length = 527 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 LI+DD+ V + R + + GF+C G A+ +E+A + PIDL+LLDI M Sbjct: 3 YQFLIVDDEYFVRQRIRLCIPWKEYGFECAGEAANVEQALHFL--QTVPIDLVLLDISMP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 NGL+LL ++ ++ I++S A + ++ Y V +YL+KP +A+TG Sbjct: 61 GPNGLELLRMMKEKNSQAKFIILSGFATFEYARQAIAYNVTNYLLKPINTEELIQAITGI 120 Query: 121 RQKKMALEKHQYYDQAEL 138 R+ L+K+ + Q L Sbjct: 121 RE---TLDKNNHLKQERL 135 >UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K690_BACHD Length = 530 Score = 163 bits (414), Expect = 4e-39, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 3/155 (1%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MINVLI+DD+ + E + ++ P G AS +A E +T DL+++DI M Sbjct: 1 MINVLIVDDEQIEREGLKLFLKDRPNIHIVGEASNGRQAIEKAL--ETQPDLMMMDIKMP 58 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +G+ + + +++ I++S+ ++ + YGV +YL+KP AL Sbjct: 59 GVDGVQAVKEIKQQLPETEFIMVSAFDTFEYAREVMRYGVKEYLLKPTTKEDVLTALDRI 118 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRL 155 + + + DQ +L Q + SS Q L Sbjct: 119 VGEIEQAREEKN-DQYKLQQRLEQISSFVQTESIL 152 >UniRef50_C6IYJ7 Predicted protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYJ7_9BACL Length = 533 Score = 163 bits (414), Expect = 4e-39, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 18/192 (9%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI VLI+DD+ +V + + + GF+ G A+ E+A ++ D P D++L DI M Sbjct: 2 MIKVLIVDDEILVRIGLKTIIPWEDNGFELIGEAANGEEALRLL--KDNPCDIVLTDIRM 59 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIK-PFQASRFEEALT 118 +GL L+ + ++ +++S+ D ++ +L G DY++K + S + L Sbjct: 60 PGCDGLQLMEEIRKLSPRTKCLILSNHNDFEYVQRALRLGAADYILKLTMEPSELMDKLN 119 Query: 119 GWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 ++ E Q + + L + S ++ + L + + Q Sbjct: 120 SMKEMIRQ-EAEQSLETSRLQVKVSKYSREAKE-------------KRLRELLIKRQGTR 165 Query: 179 FSTDELANEVNI 190 +E+ E + Sbjct: 166 AEVEEMMQEFGL 177 >UniRef50_C8WSR5 Two component transcriptional regulator, LuxR family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WSR5_ALIAD Length = 231 Score = 163 bits (413), Expect = 5e-39, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 76/204 (37%), Gaps = 10/204 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL++DD + + PG G A +A E D+ LLDI+M Sbjct: 10 IKVLVVDDHELFRRGVVTVLRSTPGIYVVGEAGNGREAIE--CFQTLQPDVTLLDIHMPV 67 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NGL+ + A + +++++ + + +++ G Y++K R E + Sbjct: 68 CNGLETARKMREANPNTKILMLTVSETEEMLFEAVKSGASGYVLKSVSPERLIECVRQVY 127 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + + + + R+P + L + + + S Sbjct: 128 EGEPVVPSSLAMK--------MIAEFSRTAETRMPSSESVTELTEREREVLQYLSAGASN 179 Query: 182 DELANEVNISRVSCRKYLIWLVNC 205 E+A + IS + R ++ +++ Sbjct: 180 KEIARALFISENTVRNHVRHILDK 203 >UniRef50_D1PQV2 Putative two-component response regulator n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQV2_9FIRM Length = 530 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 7/157 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ VLI DD+ VA L ++ + Q G +C G + A + I D+++ DI M Sbjct: 1 MLKVLIADDEPRVAMLVKQLIHWQEQGLECVGLFQDGQSALDAI--RQLHPDIVITDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L+ + + +VIS + ++ YGV DYL+KP L Sbjct: 59 PVLSGLELIEKTLESEPQVRFVVISGYRYFEYAQRAIKYGVQDYLLKPIDEEELNRVLGK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLP 156 A + Q Q L ++ + ++ + R Sbjct: 119 IC----AEKADQQSRQEHLTRMENSFRNSRRLLDREI 151 >UniRef50_B0NX83 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NX83_9CLOT Length = 539 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 81/180 (45%), Gaps = 7/180 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 MI V +++D+ ++ + + V + GF+ G A E A +I D+++ DI M Sbjct: 1 MIKVFLVEDEKIIRKSIKNNVKWEENGFEFAGEAPDGEMALPMI--EKLHPDIVITDIKM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL+L +L K +I++S + K+++ GV DYL KP + EAL Sbjct: 59 PFMDGLELSDILKKKMPKIQIIILSGYGEFDYAKEAIKIGVTDYLTKPVTGEQLLEALNK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 +QK ++ + ++ +L + ++ R G + ++ + ++ + Sbjct: 119 VKQKLDKKKRQE----EDIKKLQKNIKTQMKNMRYQFFGNLIRGKISVSKLMEQGNELGI 174 >UniRef50_Q73CG3 DNA-binding response regulator, LuxR family n=10 Tax=Firmicutes RepID=Q73CG3_BACC1 Length = 214 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 89/212 (41%), Gaps = 13/212 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 NVLI+DD +V E + + FQ G A+ E+A I D+IL+D+ M K Sbjct: 3 YNVLIVDDHFVVREGLKLIIETSDSFQIIGEATNGEEALSFI--EKKKPDVILMDLNMPK 60 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +GL+ + VL+ + + +I++++ + + + G YL+K L Sbjct: 61 MSGLETIEVLNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAI 120 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + ++ L+ + ++++++ LT + L L ++ Sbjct: 121 RGEILLQPNI------MEKIVNYKRKEIHANVVEENNLTEKELFVLKAIARGNK-----N 169 Query: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIH 213 ++A ++ I+ + + YL + N + + Sbjct: 170 KDIAFDMGIAERTVKAYLTNIYNKLGVNSRSE 201 >UniRef50_B0C756 Two-component transcriptional regulator, LuxR family n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C756_ACAM1 Length = 224 Score = 162 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 84/203 (41%), Gaps = 13/203 (6%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL++DD+ +V + P + G A + + A D+IL+DI M + Sbjct: 8 IRVLLVDDEDIVRYGLKAIAQGTPEIEIVGEAGSGKAAIA--QAKTLQPDVILMDINMPQ 65 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ + + + V+++++ +A + +++ G V YL+K F +++ Sbjct: 66 MDGVTATQEISRIQPHAKVLILTTHDEAEYLVEAMQQGAVGYLLKNTPPEDFIQSIQQAH 125 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 + + L +L + + +G+TP+ L S Sbjct: 126 KGYLQLGPGLG------QKLCQLLKTPVRPQIEAFEGITPREQDVLKLVA-----TGASN 174 Query: 182 DELANEVNISRVSCRKYLIWLVN 204 E++ ++I+ + + ++ +++ Sbjct: 175 REISETLHITEKTVKNHVSSILS 197 >UniRef50_C0C0Y1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0Y1_9CLOT Length = 547 Score = 162 bits (412), Expect = 7e-39, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 74/170 (43%), Gaps = 3/170 (1%) Query: 1 MINVLIIDDDAMVAELNR-RYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M+ V +++D++++ E R + + G++ G A+ E A +I D+++ DI M Sbjct: 9 MLKVFLVEDESVIREGLRDKIPWEQYGYRFVGEAADGEMALPLI--RKARPDVLITDIKM 66 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GL L ++ K +I+IS D ++++ GV Y++KP + + L Sbjct: 67 PFMDGLSLSKMVRTEFPKIKIIIISGYDDFEYAREAIEAGVDQYMLKPVTRAALRKVLLE 126 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQ 169 ++K + Y ++ + + G +++ + + Sbjct: 127 LKEKIAQDVQQDAYRSQFQSEMREYEQFSRRQFFEKVLGGGEISVKDIYE 176 >UniRef50_C6D3P9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3P9_PAESJ Length = 483 Score = 162 bits (412), Expect = 8e-39, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 7/195 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI+DD+ VA + + + G+Q G A A I + ++++ DI M Sbjct: 1 MYRVLIVDDEPWVAYGISKLIDWETEGYQVIGQAYDGSSALRFI--EEHRPEVVVSDIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 NG++LL + + ++VI+ S ++ + +L G DYL+K + + E + Sbjct: 59 PGLNGIELLNEIAKQKLGTEVILASGYSEFEYAQQALRLGAFDYLLKQIEKEQLLETIMR 118 Query: 120 WR---QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRT-LCQWIDAHQ 175 R ++K +L +L+ + +G+ P+ L + + Sbjct: 119 LRGHLEQKKLDAGDPDAPLNDLFELLDADGNTTIGQYLCNRGMKPEHSNVLLINAVFWYA 178 Query: 176 DYEFSTDELANEVNI 190 S++ +A + Sbjct: 179 TVTDSSERVAKLSGM 193 >UniRef50_C6D352 Two component transcriptional regulator, AraC family n=2 Tax=cellular organisms RepID=C6D352_PAESJ Length = 519 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 3/151 (1%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 VL+IDD+ ++ E + G Q GTA +A + I D+I+ DI M Sbjct: 3 YKVLLIDDERIILEGIASLMDWDKYGTQLAGTARNGLEALQFI--ETQTPDIIISDIRMP 60 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 +GL L+ + A I++S D + ++ YGV YL+KP + EA+ Sbjct: 61 GMDGLSLVKRVKEAYPHIACIMLSGFGDFEYARQAMQYGVKHYLLKPCNENTIAEAIVSV 120 Query: 121 RQKKMALEKHQYYDQAELDQLIHGSSSNEQD 151 ++ + + Q ++L S ++ Sbjct: 121 VEQLDQERRTDAFLQRMQEELKKVLPSAKEQ 151 >UniRef50_C0Z7M8 Two-component hybrid sensor and regulator n=11 Tax=Bacillales RepID=C0Z7M8_BREBN Length = 602 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 5/205 (2%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I ++I+DD + + E R + + G A +A E+ + DL+L+D+ M Sbjct: 383 IRLVIVDDHSFIRESLRSILEGQRDLRVVGLAEDGAQAVELC--EELEPDLVLMDLEMPN 440 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 +G+ + ++V+S+ D K+ + G YL+K ++ E + Sbjct: 441 MDGITATKRIKEKWPGIRILVLSTFQDTEKAKEIMRSGADGYLLKSIESRELAETIRLVH 500 Query: 122 QKKMALEKHQYYDQAELD-QLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFS 180 + + Q LD Q ++G P++ K L Q I Sbjct: 501 RGGTMIA--QDLFHKMLDGQPVNGQEDLLVAPKQSEKDENAYGLTKREQEILQMLAQGMR 558 Query: 181 TDELANEVNISRVSCRKYLIWLVNC 205 +A+++ +S + R Y L + Sbjct: 559 YKTIASKLYLSDGTVRNYASALYDK 583 >UniRef50_C6CXC7 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CXC7_PAESJ Length = 405 Score = 162 bits (411), Expect = 9e-39, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 4/141 (2%) Query: 2 INVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 I VLI DD+++V + R V + G + A KA E + +++ DI M Sbjct: 7 IKVLIADDESIVRKGLRSTVPWEKYGMEVVSDAPNGRKAWEAFL--EHRPQVVITDIVMP 64 Query: 61 KENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKP-FQASRFEEALTG 119 + +G++L + A + +I++S D + + G YL+K F+ EE L Sbjct: 65 EMDGIELSRKVKEAAPDTKIILLSCHRDFEYAQQGMKLGASGYLLKTAFEDEELEEMLVK 124 Query: 120 WRQKKMALEKHQYYDQAELDQ 140 ++++ A+ K E DQ Sbjct: 125 FQREFAAVSKSTAVKDKESDQ 145 >UniRef50_C9ABT0 Predicted protein n=3 Tax=Enterococcus casseliflavus RepID=C9ABT0_ENTCA Length = 469 Score = 162 bits (411), Expect = 9e-39, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 6/184 (3%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M VLI+DD+A + + + G+Q G+A E +I + D+++ DI M Sbjct: 1 MRKVLIVDDEASIRNGLPLIIDWERLGYQIVGSAENGEAGLAMI--RELKPDVVIADIRM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +NGL+++ I++S +D K +L G V YL+KP LT Sbjct: 59 PGKNGLEMVQAASEEGLLFFAIILSGYSDFDYAKQALQLGAVTYLLKPVDEEELIGILTK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPR--RLPKGLTPQTLRTLCQWIDAHQDY 177 QK ++ Q +++L G + +D + +L + + L + + Sbjct: 119 IDQKAKTDQQKNQKSQ-LMEKLFGGDQTGIKDAQAIKLLRLSEEADAQKLVEKLQEQVAQ 177 Query: 178 EFST 181 + Sbjct: 178 VVTL 181 >UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFU8_DESAH Length = 219 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 10/204 (4%) Query: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 I VL+ +D +V + + P + G A +A +++ + D++L+DI M + Sbjct: 4 IKVLVAEDHTIVRKGLCSLLYSEPDIEVVGEAENGREAIKMV--EELAPDVVLMDISMPE 61 Query: 62 ENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 NG+D L ++++S + I ++L G YLIK + +A+ Sbjct: 62 LNGMDATRQLKKKYPDVKILILSMHSTEEYIFETLRAGASGYLIKRSAPTDLIKAIHAAH 121 Query: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 L + + + +PR L L+ + L + H Sbjct: 122 AGDCFLSP--SISKKVIKNYVQQKQGLSLEPRGLD-LLSAREREVLQLIAEGHA-----N 173 Query: 182 DELANEVNISRVSCRKYLIWLVNC 205 E+A + IS + + + Sbjct: 174 REIAGHLYISPKTVEAHRNHIQKK 197 >UniRef50_B5JTE5 Two-component system regulatory protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTE5_9GAMM Length = 213 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 13/201 (6%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI V+I+DD +V + + G A E A +I D++L+DI M Sbjct: 1 MIRVVIVDDQTLVRHGIANLLGMSDKVEVVGEAGDGESALYLIP--QVSPDVVLMDIRMP 58 Query: 61 KENGLDLLPVLHNARCKSD-VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +GLD+L L + + VI++++ D T++ ++ G YL+K +L Sbjct: 59 GLSGLDVLRKLRASDDNTPPVILLTTFEDQDTLQQAIRLGAKGYLLKDVTLDNLLASLEL 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEF 179 + + + ++ ++S Q LT + + + Sbjct: 119 VMAGQSVFDNRINHRTDDV-----SAASRSQASLGDAYDLTAREVNII-----ELMSEGA 168 Query: 180 STDELANEVNISRVSCRKYLI 200 S E+A +++ + + Y+ Sbjct: 169 SNKEIAFRLDLKMGTVKNYVS 189 >UniRef50_D2Q2Q8 Two component transcriptional regulator, LuxR family n=3 Tax=Actinomycetales RepID=D2Q2Q8_9ACTO Length = 216 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 13/205 (6%) Query: 1 MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQ 60 MI VL++DD +V R + + G AS +A + + D++L+D+ M Sbjct: 1 MIRVLVVDDQDLVRAGLRLLIDNTDDLRVVGEASDGREALAL--AREHQPDVVLMDLQMP 58 Query: 61 KENGLDLLPVLHNA--RCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 G++ + + V+V+++ A + D++ G YL+K A A+ Sbjct: 59 VMGGVETTAAIRADPLLKDTPVVVLTTFDHDADVVDAVQAGASGYLLKDLAADELRGAIR 118 Query: 119 GWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYE 178 + A+L + + GLT + L L AH Sbjct: 119 TAVTGGAPIAPKV----AKLMMHRISRMPSRKVQEETLAGLTARELDIL-----AHVGRG 169 Query: 179 FSTDELANEVNISRVSCRKYLIWLV 203 S +E+ + +S + R Y+ L+ Sbjct: 170 LSNEEIGQALFLSPETARTYVSRLL 194 >UniRef50_A5Z5R3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z5R3_9FIRM Length = 509 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 8/171 (4%) Query: 1 MI-NVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIY 58 MI N+LI+DD+A + + Y+ + + TA+ E A I ++ I+++L D+ Sbjct: 4 MIFNLLIVDDEAPIRKGLSEYIKWEDYDCKVVATANNGEDAITKI--NENDINIVLTDVK 61 Query: 59 MQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 M +G+ L +H R VI++S ++ + ++ Y V YL+KP + A+ Sbjct: 62 MPLLDGIGLAKYIHENRPDIAVIILSGYSEFEYARSAIQYHVSQYLLKPASKDQVIAAVK 121 Query: 119 GWRQKKMALEKHQYYDQAEL----DQLIHGSSSNEQDPRRLPKGLTPQTLR 165 +K + + + ++EL DQL + + K + L Sbjct: 122 EVCEKIVTSKSNTRIKESELAFLKDQLFQQLTDSNVIDEEKQKKIDSFNLD 172 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 81/176 (46%), Gaps = 8/176 (4%) Query: 1 MINVLIIDDDAMVAELNRRYV-AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYM 59 M NVL++DD+ M+ ++ + G QC GTAS ++A E + P+D+++ D+ M Sbjct: 1 MYNVLLVDDEYMILSGLQKIINWDDLGLQCVGTASNGQEALEFV--RKHPVDIVVTDVSM 58 Query: 60 QKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 +++G++ + + +V+S + +K+ + G ++L+KP E L Sbjct: 59 PEQSGIEFVQAAQEEDINFNFVVLSGYQEFEYVKEGIRLGAENFLLKPISKEELNETLRK 118 Query: 120 WRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQ 175 K + ++H + D L+ ++ + + L+ + + + AH Sbjct: 119 TVSKLDSEKRHAHT-----DTLLFENTLERWVNDDIDNVDLRRILKQVGKPLQAHA 169 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.175 0.550 Lambda K H 0.267 0.0535 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,686,736,551 Number of Sequences: 3077464 Number of extensions: 87386983 Number of successful extensions: 451913 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 30711 Number of HSP's successfully gapped in prelim test: 11532 Number of HSP's that attempted gapping in prelim test: 344182 Number of HSP's gapped (non-prelim): 48637 length of query: 239 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 114 effective length of database: 655,713,356 effective search space: 74751322584 effective search space used: 74751322584 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 92 (39.7 bits)