BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (140 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_O82902 Uncharacterized protein yubJ n=66 Tax=root RepID... 282 3e-75 UniRef50_B2U6C4 YcjA n=1 Tax=Escherichia coli 53638 RepID=B2U6C4... 245 3e-64 UniRef50_Q6TFW3 ORF33 n=3 Tax=Enterobacteriaceae RepID=Q6TFW3_ERWAM 49 4e-05 UniRef50_C8QE82 Putative uncharacterized protein n=1 Tax=Pantoea... 39 0.040 UniRef50_O82898 Uncharacterized protein yubF n=84 Tax=root RepID... 38 0.077 >UniRef50_O82902 Uncharacterized protein yubJ n=66 Tax=root RepID=YUBJ_ECO57 Length = 140 Score = 282 bits (721), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 140/140 (100%), Positives = 140/140 (100%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY 60 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY Sbjct: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY 60 Query: 61 GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFV 120 GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFV Sbjct: 61 GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFV 120 Query: 121 REEREAMDVVLQALDGEHMS 140 REEREAMDVVLQALDGEHMS Sbjct: 121 REEREAMDVVLQALDGEHMS 140 >UniRef50_B2U6C4 YcjA n=1 Tax=Escherichia coli 53638 RepID=B2U6C4_ECOLX Length = 164 Score = 245 bits (625), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 124/138 (89%), Positives = 129/138 (93%) Query: 3 CTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEYGA 62 CTVKEIIRDVLDTDVPDSE VFAVVLTRGDVRHIAQDW+L+DDELETVMQRLDDAF YGA Sbjct: 27 CTVKEIIRDVLDTDVPDSEFVFAVVLTRGDVRHIAQDWSLTDDELETVMQRLDDAFVYGA 86 Query: 63 DVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFVRE 122 +V D+V ELMEEKR +R VTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFVRE Sbjct: 87 CDRVVSDIVNELMEEKRVNRLVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFVRE 146 Query: 123 EREAMDVVLQALDGEHMS 140 EREAMDVVLQALDGEHMS Sbjct: 147 EREAMDVVLQALDGEHMS 164 >UniRef50_Q6TFW3 ORF33 n=3 Tax=Enterobacteriaceae RepID=Q6TFW3_ERWAM Length = 136 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 10/141 (7%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFE- 59 M+ V EI +LD+ P + ++ T DV D NL+DDE E V+ + + Sbjct: 1 MHGNVNEICARLLDSFEPQQR-ISLLIWTAEDVHDCTSDMNLTDDEAEAVLAEIAECSSH 59 Query: 60 --YGADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGD 117 YG V + +++ E+ R++ V A L+KV+ALA ++ RL + S G+G Sbjct: 60 SRYGVGKDTVWSLAKQVREDAARDRKIEVNAEALQKVVALA-AQFIRLEEIQS---GEGA 115 Query: 118 A--FVREEREAMDVVLQALDG 136 A +E EA++ + + ++G Sbjct: 116 ARRLYPQESEALECITKVING 136 >UniRef50_C8QE82 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8QE82_9ENTR Length = 129 Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Query: 2 YCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY- 60 + V EI +L PD + A++ T DV H + +DDE E V+ + E+ Sbjct: 4 HGNVNEICAWLLRDYGPDMR-LTALIWTAQDVHHCTEGMGTTDDEAEIVLADIAAHREHH 62 Query: 61 --GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAG 99 G D V ++VR E +R V++PA LE ++ AG Sbjct: 63 DTGIDRQAVREMVRNWRAEAHRTRMVSLPADSLEALLNSAG 103 >UniRef50_O82898 Uncharacterized protein yubF n=84 Tax=root RepID=YUBF_ECO57 Length = 144 Score = 38.1 bits (87), Expect = 0.077, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 5/111 (4%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIA--QDWNLSDDELETVMQRLDDAF 58 MY T + + R+ L P + V+ + +++ +A D +LSD E+ TV+ RL+D Sbjct: 1 MYGTCETLCRE-LAAKYPGYTPLMLVIWSPEEIQALADGMDISLSDPEIRTVLARLEDIP 59 Query: 59 E-YGADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEM-KRLYA 107 E + I E++ +RQVTVPA +L ++ A + KR +A Sbjct: 60 EDQRIESGISSAAAMEIISNVSENRQVTVPAELLASLIQTAEQALWKREWA 110 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B2U6C4 YcjA n=1 Tax=Escherichia coli 53638 RepID=B2U6C4... 204 7e-52 UniRef50_O82902 Uncharacterized protein yubJ n=66 Tax=root RepID... 200 1e-50 UniRef50_Q6TFW3 ORF33 n=3 Tax=Enterobacteriaceae RepID=Q6TFW3_ERWAM 159 3e-38 Sequences not found previously or not previously below threshold: UniRef50_C8QE82 Putative uncharacterized protein n=1 Tax=Pantoea... 75 9e-13 UniRef50_B5N6G4 Putative cytoplasmic protein n=5 Tax=Salmonella ... 53 4e-06 UniRef50_Q4LC27 YceB protein n=2 Tax=Sodalis glossinidius RepID=... 48 1e-04 UniRef50_O82898 Uncharacterized protein yubF n=84 Tax=root RepID... 47 2e-04 >UniRef50_B2U6C4 YcjA n=1 Tax=Escherichia coli 53638 RepID=B2U6C4_ECOLX Length = 164 Score = 204 bits (519), Expect = 7e-52, Method: Composition-based stats. Identities = 124/138 (89%), Positives = 129/138 (93%) Query: 3 CTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEYGA 62 CTVKEIIRDVLDTDVPDSE VFAVVLTRGDVRHIAQDW+L+DDELETVMQRLDDAF YGA Sbjct: 27 CTVKEIIRDVLDTDVPDSEFVFAVVLTRGDVRHIAQDWSLTDDELETVMQRLDDAFVYGA 86 Query: 63 DVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFVRE 122 +V D+V ELMEEKR +R VTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFVRE Sbjct: 87 CDRVVSDIVNELMEEKRVNRLVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFVRE 146 Query: 123 EREAMDVVLQALDGEHMS 140 EREAMDVVLQALDGEHMS Sbjct: 147 EREAMDVVLQALDGEHMS 164 >UniRef50_O82902 Uncharacterized protein yubJ n=66 Tax=root RepID=YUBJ_ECO57 Length = 140 Score = 200 bits (509), Expect = 1e-50, Method: Composition-based stats. Identities = 140/140 (100%), Positives = 140/140 (100%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY 60 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY Sbjct: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY 60 Query: 61 GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFV 120 GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFV Sbjct: 61 GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFV 120 Query: 121 REEREAMDVVLQALDGEHMS 140 REEREAMDVVLQALDGEHMS Sbjct: 121 REEREAMDVVLQALDGEHMS 140 >UniRef50_Q6TFW3 ORF33 n=3 Tax=Enterobacteriaceae RepID=Q6TFW3_ERWAM Length = 136 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 10/141 (7%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFE- 59 M+ V EI +LD+ P + ++ T DV D NL+DDE E V+ + + Sbjct: 1 MHGNVNEICARLLDSFEPQQR-ISLLIWTAEDVHDCTSDMNLTDDEAEAVLAEIAECSSH 59 Query: 60 --YGADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGD 117 YG V + +++ E+ R++ V A L+KV+ALA ++ RL + S G+G Sbjct: 60 SRYGVGKDTVWSLAKQVREDAARDRKIEVNAEALQKVVALA-AQFIRLEEIQS---GEGA 115 Query: 118 A--FVREEREAMDVVLQALDG 136 A +E EA++ + + ++G Sbjct: 116 ARRLYPQESEALECITKVING 136 >UniRef50_C8QE82 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8QE82_9ENTR Length = 129 Score = 74.7 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Query: 2 YCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY- 60 + V EI +L PD + A++ T DV H + +DDE E V+ + E+ Sbjct: 4 HGNVNEICAWLLRDYGPDMR-LTALIWTAQDVHHCTEGMGTTDDEAEIVLADIAAHREHH 62 Query: 61 --GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAG 99 G D V ++VR E +R V++PA LE ++ AG Sbjct: 63 DTGIDRQAVREMVRNWRAEAHRTRMVSLPADSLEALLNSAG 103 >UniRef50_B5N6G4 Putative cytoplasmic protein n=5 Tax=Salmonella enterica RepID=B5N6G4_SALET Length = 144 Score = 52.8 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 7/107 (6%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFE- 59 MY TV I D+L + E + ++ GDVR + ++N + D+++ V++ + ++ Sbjct: 1 MYGTVSTICCDLLKVYE-NHEKIAVIIWCEGDVREMGAEFNPTADDIQAVLRAIGESDSD 59 Query: 60 ----YGADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEM 102 G + V V+REL+ R RQ+ VP +L ++ L + M Sbjct: 60 ALWRDGIGQNFVEGVLRELVA-LRPPRQIAVPEDVLRTLLPLMEAGM 105 >UniRef50_Q4LC27 YceB protein n=2 Tax=Sodalis glossinidius RepID=Q4LC27_SODGL Length = 145 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 14/139 (10%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDD--AF 58 MY T+K I + D E + ++ R + I +D +++D+E+ TV++ + Sbjct: 1 MYGTIKAISERLFHAYGGD-EPLAVLIWDRPAIADIGRDDHVTDEEVLTVLEYIGSLPIS 59 Query: 59 EY---GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGD 115 Y G + V +++ E + R R VTV A MLE V+ LA S + S D Sbjct: 60 LYRDAGINREGVEEMIYETI--ARRRRSVTVDAGMLESVLHLAAS------VLDSNTPED 111 Query: 116 GDAFVREEREAMDVVLQAL 134 DA R A+ V+++ L Sbjct: 112 MDAETRSGHLAIAVLVKVL 130 >UniRef50_O82898 Uncharacterized protein yubF n=84 Tax=root RepID=YUBF_ECO57 Length = 144 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQ--DWNLSDDELETVMQRLDDAF 58 MY T + + R++ P + V+ + +++ +A D +LSD E+ TV+ RL+D Sbjct: 1 MYGTCETLCRELAAKY-PGYTPLMLVIWSPEEIQALADGMDISLSDPEIRTVLARLEDIP 59 Query: 59 EYGADVSIVHDVVR-ELMEEKRASRQVTVPAVMLEKVMALA 98 E S + E++ +RQVTVPA +L ++ A Sbjct: 60 EDQRIESGISSAAAMEIISNVSENRQVTVPAELLASLIQTA 100 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_O82902 Uncharacterized protein yubJ n=66 Tax=root RepID... 179 2e-44 UniRef50_B2U6C4 YcjA n=1 Tax=Escherichia coli 53638 RepID=B2U6C4... 179 3e-44 UniRef50_Q6TFW3 ORF33 n=3 Tax=Enterobacteriaceae RepID=Q6TFW3_ERWAM 139 3e-32 UniRef50_Q4LC27 YceB protein n=2 Tax=Sodalis glossinidius RepID=... 130 1e-29 UniRef50_C8QE82 Putative uncharacterized protein n=1 Tax=Pantoea... 115 4e-25 UniRef50_B5N6G4 Putative cytoplasmic protein n=5 Tax=Salmonella ... 115 4e-25 UniRef50_O82898 Uncharacterized protein yubF n=84 Tax=root RepID... 105 6e-22 Sequences not found previously or not previously below threshold: UniRef50_B5N799 Putative uncharacterized protein n=2 Tax=Salmone... 56 5e-07 >UniRef50_O82902 Uncharacterized protein yubJ n=66 Tax=root RepID=YUBJ_ECO57 Length = 140 Score = 179 bits (455), Expect = 2e-44, Method: Composition-based stats. Identities = 140/140 (100%), Positives = 140/140 (100%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY 60 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY Sbjct: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY 60 Query: 61 GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFV 120 GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFV Sbjct: 61 GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFV 120 Query: 121 REEREAMDVVLQALDGEHMS 140 REEREAMDVVLQALDGEHMS Sbjct: 121 REEREAMDVVLQALDGEHMS 140 >UniRef50_B2U6C4 YcjA n=1 Tax=Escherichia coli 53638 RepID=B2U6C4_ECOLX Length = 164 Score = 179 bits (453), Expect = 3e-44, Method: Composition-based stats. Identities = 124/138 (89%), Positives = 129/138 (93%) Query: 3 CTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEYGA 62 CTVKEIIRDVLDTDVPDSE VFAVVLTRGDVRHIAQDW+L+DDELETVMQRLDDAF YGA Sbjct: 27 CTVKEIIRDVLDTDVPDSEFVFAVVLTRGDVRHIAQDWSLTDDELETVMQRLDDAFVYGA 86 Query: 63 DVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFVRE 122 +V D+V ELMEEKR +R VTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFVRE Sbjct: 87 CDRVVSDIVNELMEEKRVNRLVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFVRE 146 Query: 123 EREAMDVVLQALDGEHMS 140 EREAMDVVLQALDGEHMS Sbjct: 147 EREAMDVVLQALDGEHMS 164 >UniRef50_Q6TFW3 ORF33 n=3 Tax=Enterobacteriaceae RepID=Q6TFW3_ERWAM Length = 136 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 10/141 (7%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFE- 59 M+ V EI +LD+ P + ++ T DV D NL+DDE E V+ + + Sbjct: 1 MHGNVNEICARLLDSFEPQQR-ISLLIWTAEDVHDCTSDMNLTDDEAEAVLAEIAECSSH 59 Query: 60 --YGADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGD 117 YG V + +++ E+ R++ V A L+KV+ALA ++ RL + S G+G Sbjct: 60 SRYGVGKDTVWSLAKQVREDAARDRKIEVNAEALQKVVALA-AQFIRLEEIQS---GEGA 115 Query: 118 A--FVREEREAMDVVLQALDG 136 A +E EA++ + + ++G Sbjct: 116 ARRLYPQESEALECITKVING 136 >UniRef50_Q4LC27 YceB protein n=2 Tax=Sodalis glossinidius RepID=Q4LC27_SODGL Length = 145 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 14/139 (10%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAF-- 58 MY T+K I + D E + ++ R + I +D +++D+E+ TV++ + Sbjct: 1 MYGTIKAISERLFHAYGGD-EPLAVLIWDRPAIADIGRDDHVTDEEVLTVLEYIGSLPIS 59 Query: 59 ---EYGADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGD 115 + G + V +++ E + R R VTV A MLE V+ LA S + S D Sbjct: 60 LYRDAGINREGVEEMIYETI--ARRRRSVTVDAGMLESVLHLAAS------VLDSNTPED 111 Query: 116 GDAFVREEREAMDVVLQAL 134 DA R A+ V+++ L Sbjct: 112 MDAETRSGHLAIAVLVKVL 130 >UniRef50_C8QE82 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8QE82_9ENTR Length = 129 Score = 115 bits (288), Expect = 4e-25, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Query: 2 YCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY- 60 + V EI +L PD + A++ T DV H + +DDE E V+ + E+ Sbjct: 4 HGNVNEICAWLLRDYGPDMR-LTALIWTAQDVHHCTEGMGTTDDEAEIVLADIAAHREHH 62 Query: 61 --GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAG 99 G D V ++VR E +R V++PA LE ++ AG Sbjct: 63 DTGIDRQAVREMVRNWRAEAHRTRMVSLPADSLEALLNSAG 103 >UniRef50_B5N6G4 Putative cytoplasmic protein n=5 Tax=Salmonella enterica RepID=B5N6G4_SALET Length = 144 Score = 115 bits (288), Expect = 4e-25, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 7/107 (6%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFE- 59 MY TV I D+L + E + ++ GDVR + ++N + D+++ V++ + ++ Sbjct: 1 MYGTVSTICCDLLKVYE-NHEKIAVIIWCEGDVREMGAEFNPTADDIQAVLRAIGESDSD 59 Query: 60 ----YGADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEM 102 G + V V+REL+ R RQ+ VP +L ++ L + M Sbjct: 60 ALWRDGIGQNFVEGVLRELVA-LRPPRQIAVPEDVLRTLLPLMEAGM 105 >UniRef50_O82898 Uncharacterized protein yubF n=84 Tax=root RepID=YUBF_ECO57 Length = 144 Score = 105 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQ--DWNLSDDELETVMQRLDDAF 58 MY T + + R++ P + V+ + +++ +A D +LSD E+ TV+ RL+D Sbjct: 1 MYGTCETLCRELAAKY-PGYTPLMLVIWSPEEIQALADGMDISLSDPEIRTVLARLEDIP 59 Query: 59 EYGADVSIVHDVVR-ELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLY 106 E S + E++ +RQVTVPA +L ++ A + + Sbjct: 60 EDQRIESGISSAAAMEIISNVSENRQVTVPAELLASLIQTAEQALWKRE 108 >UniRef50_B5N799 Putative uncharacterized protein n=2 Tax=Salmonella enterica subsp. enterica RepID=B5N799_SALET Length = 137 Score = 55.5 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%) Query: 1 MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRL-----D 55 MY T KE+ + D ++ T+ DV + Q ++ E + +++ + Sbjct: 2 MYGTRKELNSKLKRMFGNDERF-ALLIWTKQDVMSLTQAM--TEVEADAILREIGRKGMG 58 Query: 56 DAFEYGADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYA-----VGS 110 + G S V + L E V+VPA +L +V +AG + A V Sbjct: 59 EHTGDGISDSTVQALYAGLRTEIP---TVSVPADLLARVTNIAGRALDTEDAQAWPLVCQ 115 Query: 111 ENGGDGDAFV 120 E G DA V Sbjct: 116 EYPGVADAQV 125 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.127 0.295 Lambda K H 0.267 0.0392 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 622,986,476 Number of Sequences: 3077464 Number of extensions: 18856705 Number of successful extensions: 69510 Number of sequences better than 1.0e-01: 9 Number of HSP's better than 0.1 without gapping: 13 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 69470 Number of HSP's gapped (non-prelim): 23 length of query: 140 length of database: 1,040,396,356 effective HSP length: 104 effective length of query: 36 effective length of database: 720,340,100 effective search space: 25932243600 effective search space used: 25932243600 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 87 (38.2 bits)