BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (75 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P64520 Uncharacterized protein yodD n=83 Tax=Enterobact... 150 1e-35 UniRef50_A7MP34 Putative uncharacterized protein n=1 Tax=Cronoba... 52 8e-06 UniRef50_C9XVB4 Putative uncharacterized protein n=1 Tax=Cronoba... 51 1e-05 >UniRef50_P64520 Uncharacterized protein yodD n=83 Tax=Enterobacteriaceae RepID=YODD_ECOL6 Length = 75 Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/75 (100%), Positives = 75/75 (100%) Query: 1 MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA 60 MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA Sbjct: 1 MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA 60 Query: 61 FELDIHDFSVSEVNR 75 FELDIHDFSVSEVNR Sbjct: 61 FELDIHDFSVSEVNR 75 >UniRef50_A7MP34 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MP34_ENTS8 Length = 79 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 39/74 (52%), Gaps = 5/74 (6%) Query: 1 MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA 60 MK +T + D+DALL AI ISE E H + S ++ D R T REL + Sbjct: 10 MKPENPTPETPQ----ADIDALLGAIEVISEDERHTPECVSPTLA-DARRKDTCRELGEE 64 Query: 61 FELDIHDFSVSEVN 74 FELDI D SEVN Sbjct: 65 FELDIRDAGPSEVN 78 >UniRef50_C9XVB4 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9XVB4_CROTZ Length = 78 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Query: 1 MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA 60 MK +T + D+DALL AI ISE E H + S D R REL + Sbjct: 9 MKPENPTPETPQ----ADIDALLDAIEVISEDEQHTPECVS-PTQADARRQDACRELGEE 63 Query: 61 FELDIHDFSVSEVNR 75 FELDI D SEVNR Sbjct: 64 FELDIRDAGPSEVNR 78 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P64520 Uncharacterized protein yodD n=83 Tax=Enterobact... 100 2e-20 UniRef50_A7MP34 Putative uncharacterized protein n=1 Tax=Cronoba... 95 6e-19 UniRef50_C9XVB4 Putative uncharacterized protein n=1 Tax=Cronoba... 88 8e-17 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P64520 Uncharacterized protein yodD n=83 Tax=Enterobacteriaceae RepID=YODD_ECOL6 Length = 75 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 75/75 (100%), Positives = 75/75 (100%) Query: 1 MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA 60 MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA Sbjct: 1 MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA 60 Query: 61 FELDIHDFSVSEVNR 75 FELDIHDFSVSEVNR Sbjct: 61 FELDIHDFSVSEVNR 75 >UniRef50_A7MP34 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MP34_ENTS8 Length = 79 Score = 95.2 bits (235), Expect = 6e-19, Method: Composition-based stats. Identities = 32/74 (43%), Positives = 39/74 (52%), Gaps = 5/74 (6%) Query: 1 MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA 60 MK +T + D+DALL AI ISE E H + S ++ D R T REL + Sbjct: 10 MKPENPTPETPQ----ADIDALLGAIEVISEDERHTPECVSPTLA-DARRKDTCRELGEE 64 Query: 61 FELDIHDFSVSEVN 74 FELDI D SEVN Sbjct: 65 FELDIRDAGPSEVN 78 >UniRef50_C9XVB4 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9XVB4_CROTZ Length = 78 Score = 88.3 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 32/75 (42%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Query: 1 MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHVSVDGREYHTWRELADA 60 MK +T + D+DALL AI ISE E H + S D R REL + Sbjct: 9 MKPENPTPETPQ----ADIDALLDAIEVISEDEQHTPECVSP-TQADARRQDACRELGEE 63 Query: 61 FELDIHDFSVSEVNR 75 FELDI D SEVNR Sbjct: 64 FELDIRDAGPSEVNR 78 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.302 0.124 0.321 Lambda K H 0.267 0.0373 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 225,710,717 Number of Sequences: 3077464 Number of extensions: 6155624 Number of successful extensions: 17617 Number of sequences better than 1.0e-01: 3 Number of HSP's better than 0.1 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 17607 Number of HSP's gapped (non-prelim): 6 length of query: 75 length of database: 1,040,396,356 effective HSP length: 46 effective length of query: 29 effective length of database: 898,833,012 effective search space: 26066157348 effective search space used: 26066157348 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.3 bits) S2: 87 (38.3 bits)