Phyre 2 Results for Q46898

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Email | l.a.kelley@imperial.ac.uk
Description | Q46898
Date | Thu Jan 5 12:35:38 GMT 2012
Unique Job ID | 9ab5d873f09efa24

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3kg4A_
Top template information
PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from mannheimia2 succiniciproducens
Confidence and coverage
Confidence: | 99.7% | Coverage: | 52%
117 residues ( 52% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | R | S | Y | L | I | L | R | L | A | G | P | M | Q | A | W | G | Q | P | T | F | E | G | T | R | P | T | G | R | F | P | T | R | S | G | L | L | G | L | L | G | A | C | L | G | I | Q | R | D | D | T | S | S | L | Q | A | L | S | E | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | Q | F | A | V | R | C | D | E | L | I | L | D | D | R | R | V | S | V | T | G | L | R | D | Y | H | T | V | L | G | A | R | E | D | Y | R | G | L | K | S | H | E | T | I | Q | T | W | R | E | Y | L | C | D | A | S | F | T | V | A | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | W | L | T | P | H | A | T | M | V | I | S | E | L | E | K | A | V | L | K | P | R | Y | T | P | Y | L | G | R | R | S | C | P | L | T | H | P | L | F | L | G | T | C | Q | A | S | D | P | Q | K | A | L | L | N | Y | E | P | V | G | G | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | .
Sequence |  | I | Y | S | E | E | S | V | T | G | H | H | L | K | F | T | A | R | D | E | P | M | I | T | L | P | R | Q | F | A | S | R | E | W | Y | V | I | K | G | G | M | D | V | S | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  | ? |  | ? |  |  | ? | ? | ? | ? |  | ? | ? |  |  | ? |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3kg4A_ |

### PDB 3kg4 chain A

Region: 1 - 152
Aligned: 117
Modelled: 126
Confidence: 99.7%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from mannheimia2 succiniciproducens

Phyre2
2 |
| d2ihta1 |

### PDB 2iht chain A domain 1

Region: 124 - 162
Aligned: 39
Modelled: 39
Confidence: 64.8%
Identity: 26%
Fold: DHS-like NAD/FAD-binding domain
Superfamily: DHS-like NAD/FAD-binding domain
Family: Pyruvate oxidase and decarboxylase, middle domain

Phyre2
3 |
| d1ovma1 |

### PDB 1ovm chain A domain 1

Region: 125 - 164
Aligned: 40
Modelled: 40
Confidence: 63.5%
Identity: 18%
Fold: DHS-like NAD/FAD-binding domain
Superfamily: DHS-like NAD/FAD-binding domain
Family: Pyruvate oxidase and decarboxylase, middle domain

Phyre2
4 |
| d1t9ba1 |

### PDB 1t9b chain A domain 1

Region: 124 - 162
Aligned: 39
Modelled: 39
Confidence: 52.7%
Identity: 21%
Fold: DHS-like NAD/FAD-binding domain
Superfamily: DHS-like NAD/FAD-binding domain
Family: Pyruvate oxidase and decarboxylase, middle domain

Phyre2
5 |
| d2ez9a1 |

### PDB 2ez9 chain A domain 1

Region: 128 - 162
Aligned: 35
Modelled: 35
Confidence: 51.5%
Identity: 20%
Fold: DHS-like NAD/FAD-binding domain
Superfamily: DHS-like NAD/FAD-binding domain
Family: Pyruvate oxidase and decarboxylase, middle domain

Phyre2
6 |
| d1zpda1 |

### PDB 1zpd chain A domain 1

Region: 125 - 164
Aligned: 40
Modelled: 40
Confidence: 51.2%
Identity: 18%
Fold: DHS-like NAD/FAD-binding domain
Superfamily: DHS-like NAD/FAD-binding domain
Family: Pyruvate oxidase and decarboxylase, middle domain

Phyre2
7 |
| d1pvda1 |

### PDB 1pvd chain A domain 1

Region: 125 - 164
Aligned: 40
Modelled: 40
Confidence: 49.7%
Identity: 18%
Fold: DHS-like NAD/FAD-binding domain
Superfamily: DHS-like NAD/FAD-binding domain
Family: Pyruvate oxidase and decarboxylase, middle domain

Phyre2
8 |
| d2djia1 |

### PDB 2dji chain A domain 1

Region: 130 - 162
Aligned: 33
Modelled: 33
Confidence: 41.4%
Identity: 15%
Fold: DHS-like NAD/FAD-binding domain
Superfamily: DHS-like NAD/FAD-binding domain
Family: Pyruvate oxidase and decarboxylase, middle domain

Phyre2
9 |
| d2ji7a1 |

### PDB 2ji7 chain A domain 1

Region: 124 - 162
Aligned: 39
Modelled: 39
Confidence: 35.2%
Identity: 15%
Fold: DHS-like NAD/FAD-binding domain
Superfamily: DHS-like NAD/FAD-binding domain
Family: Pyruvate oxidase and decarboxylase, middle domain

Phyre2
10 |
| d1fyva_ |

### PDB 1fyv chain A

Region: 116 - 157
Aligned: 42
Modelled: 42
Confidence: 29.3%
Identity: 17%
Fold: Flavodoxin-like
Superfamily: Toll/Interleukin receptor TIR domain
Family: Toll/Interleukin receptor TIR domain

Phyre2
11 |
| c3h16A_ |

### PDB 3h16 chain A

Region: 114 - 157
Aligned: 44
Modelled: 44
Confidence: 26.2%
Identity: 7%
PDB header:signaling protein
Chain: A: PDB Molecule:tir protein;
PDBTitle: crystal structure of a bacteria tir domain, pdtir from2 paracoccus denitrificans

Phyre2
12 |
| d1ozha1 |

### PDB 1ozh chain A domain 1

Region: 125 - 160
Aligned: 36
Modelled: 36
Confidence: 24.9%
Identity: 8%
Fold: DHS-like NAD/FAD-binding domain
Superfamily: DHS-like NAD/FAD-binding domain
Family: Pyruvate oxidase and decarboxylase, middle domain

Phyre2
13 |
| d1q6za1 |

### PDB 1q6z chain A domain 1

Region: 124 - 162
Aligned: 39
Modelled: 39
Confidence: 23.9%
Identity: 26%
Fold: DHS-like NAD/FAD-binding domain
Superfamily: DHS-like NAD/FAD-binding domain
Family: Pyruvate oxidase and decarboxylase, middle domain

Phyre2
14 |
| c3oziB_ |

### PDB 3ozi chain B

Region: 115 - 164
Aligned: 50
Modelled: 50
Confidence: 22.9%
Identity: 8%
PDB header:plant protein
Chain: B: PDB Molecule:l6tr;
PDBTitle: crystal structure of the tir domain from the flax disease resistance2 protein l6

Phyre2
15 |
| c2vbgB_ |

### PDB 2vbg chain B

Region: 124 - 164
Aligned: 41
Modelled: 41
Confidence: 22.1%
Identity: 17%
PDB header:lyase
Chain: B: PDB Molecule:branched-chain alpha-ketoacid decarboxylase;
PDBTitle: the complex structure of the branched-chain keto acid2 decarboxylase (kdca) from lactococcus lactis with 2r-1-3 hydroxyethyl-deazathdp

Phyre2
16 |
| c2panF_ |

### PDB 2pan chain F

Region: 124 - 162
Aligned: 39
Modelled: 34
Confidence: 18.0%
Identity: 18%
PDB header:lyase
Chain: F: PDB Molecule:glyoxylate carboligase;
PDBTitle: crystal structure of e. coli glyoxylate carboligase

Phyre2
17 |
| c1powA_ |

### PDB 1pow chain A

Region: 130 - 162
Aligned: 33
Modelled: 33
Confidence: 14.5%
Identity: 21%
PDB header:oxidoreductase(oxygen as acceptor)
Chain: A: PDB Molecule:pyruvate oxidase;
PDBTitle: the refined structures of a stabilized mutant and of wild-type2 pyruvate oxidase from lactobacillus plantarum

Phyre2
18 |
| c1wxnA_ |

### PDB 1wxn chain A

Region: 145 - 152
Aligned: 8
Modelled: 8
Confidence: 12.3%
Identity: 50%
PDB header:toxin
Chain: A: PDB Molecule:toxin apetx2;
PDBTitle: solution structure of apetx2, a specific peptide inhibitor2 of asic3 proton-gated channels

Phyre2
19 |
| c2vbiF_ |

### PDB 2vbi chain F

Region: 124 - 164
Aligned: 41
Modelled: 41
Confidence: 11.2%
Identity: 15%
PDB header:lyase
Chain: F: PDB Molecule:pyruvate decarboxylase;
PDBTitle: holostructure of pyruvate decarboxylase from acetobacter2 pasteurianus

Phyre2
20 |
| d2nzwa1 |

### PDB 2nzw chain A domain 1

Region: 94 - 172
Aligned: 79
Modelled: 79
Confidence: 11.0%
Identity: 14%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: FucT-like

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3kg4A_ |
|  | 99.7 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from mannheimia2 succiniciproducens
2 | d2ihta1 |
|  | 64.8 | 26 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
3 | d1ovma1 |
|  | 63.5 | 18 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
4 | d1t9ba1 |
|  | 52.7 | 21 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
5 | d2ez9a1 |
|  | 51.5 | 20 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
6 | d1zpda1 |
|  | 51.2 | 18 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
7 | d1pvda1 |
|  | 49.7 | 18 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
8 | d2djia1 |
|  | 41.4 | 15 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
9 | d2ji7a1 |
|  | 35.2 | 15 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
10 | d1fyva_ |
|  | 29.3 | 17 | Fold:Flavodoxin-like Superfamily:Toll/Interleukin receptor TIR domain Family:Toll/Interleukin receptor TIR domain
11 | c3h16A_ |
|  | 26.2 | 7 | PDB header:signaling protein Chain: A: PDB Molecule:tir protein; PDBTitle: crystal structure of a bacteria tir domain, pdtir from2 paracoccus denitrificans
12 | d1ozha1 |
|  | 24.9 | 8 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
13 | d1q6za1 |
|  | 23.9 | 26 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
14 | c3oziB_ |
|  | 22.9 | 8 | PDB header:plant protein Chain: B: PDB Molecule:l6tr; PDBTitle: crystal structure of the tir domain from the flax disease resistance2 protein l6
15 | c2vbgB_ |
|  | 22.1 | 17 | PDB header:lyase Chain: B: PDB Molecule:branched-chain alpha-ketoacid decarboxylase; PDBTitle: the complex structure of the branched-chain keto acid2 decarboxylase (kdca) from lactococcus lactis with 2r-1-3 hydroxyethyl-deazathdp
16 | c2panF_ |
|  | 18.0 | 18 | PDB header:lyase Chain: F: PDB Molecule:glyoxylate carboligase; PDBTitle: crystal structure of e. coli glyoxylate carboligase
17 | c1powA_ |
|  | 14.5 | 21 | PDB header:oxidoreductase(oxygen as acceptor) Chain: A: PDB Molecule:pyruvate oxidase; PDBTitle: the refined structures of a stabilized mutant and of wild-type2 pyruvate oxidase from lactobacillus plantarum
18 | c1wxnA_ |
|  | 12.3 | 50 | PDB header:toxin Chain: A: PDB Molecule:toxin apetx2; PDBTitle: solution structure of apetx2, a specific peptide inhibitor2 of asic3 proton-gated channels
19 | c2vbiF_ |
|  | 11.2 | 15 | PDB header:lyase Chain: F: PDB Molecule:pyruvate decarboxylase; PDBTitle: holostructure of pyruvate decarboxylase from acetobacter2 pasteurianus
20 | d2nzwa1 |
|  | 11.0 | 14 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:FucT-like
21 | d1fyxa_ |
| not modelled | 10.4 | 4 | Fold:Flavodoxin-like Superfamily:Toll/Interleukin receptor TIR domain Family:Toll/Interleukin receptor TIR domain
22 | c2ap7A_ |
| not modelled | 10.2 | 60 | PDB header:antibiotic Chain: A: PDB Molecule:bombinin h2; PDBTitle: solution structure of bombinin h2 in dpc micelles
23 | c3pdiG_ |
| not modelled | 10.1 | 13 | PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen
24 | c2ap8A_ |
| not modelled | 10.1 | 60 | PDB header:antibiotic Chain: A: PDB Molecule:bombinin h4; PDBTitle: solution structure of bombinin h4 in dpc micelles
25 | c2w93A_ |
| not modelled | 9.6 | 17 | PDB header:lyase Chain: A: PDB Molecule:pyruvate decarboxylase isozyme 1; PDBTitle: crystal structure of the saccharomyces cerevisiae pyruvate2 decarboxylase variant e477q in complex with the surrogate3 pyruvamide
26 | c2djiA_ |
| not modelled | 9.0 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate oxidase; PDBTitle: crystal structure of pyruvate oxidase from aerococcus2 viridans containing fad
27 | c2z5vA_ |
| not modelled | 8.6 | 16 | PDB header:immune system Chain: A: PDB Molecule:myeloid differentiation primary response protein PDBTitle: solution structure of the tir domain of human myd88
28 | c2pgnA_ |
| not modelled | 7.7 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:cyclohexane-1,2-dione hydrolase (cdh); PDBTitle: the crystal structure of fad and thdp-dependent cyclohexane-1,2-dione2 hydrolase in complex with cyclohexane-1,2-dione
29 | d1m1na_ |
| not modelled | 7.6 | 7 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein
30 | d2fug61 |
| not modelled | 7.1 | 17 | Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nq06-like
31 | d1vkya_ |
| not modelled | 7.0 | 28 | Fold:QueA-like Superfamily:QueA-like Family:QueA-like
32 | d1qh8a_ |
| not modelled | 6.9 | 7 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein
33 | c3le4A_ |
| not modelled | 6.8 | 27 | PDB header:nuclear protein Chain: A: PDB Molecule:microprocessor complex subunit dgcr8; PDBTitle: crystal structure of the dgcr8 dimerization domain
34 | c1jscA_ |
| not modelled | 6.6 | 21 | PDB header:lyase Chain: A: PDB Molecule:acetohydroxy-acid synthase; PDBTitle: crystal structure of the catalytic subunit of yeast2 acetohydroxyacid synthase: a target for herbicidal3 inhibitors
35 | c1ovmC_ |
| not modelled | 5.9 | 18 | PDB header:lyase Chain: C: PDB Molecule:indole-3-pyruvate decarboxylase; PDBTitle: crystal structure of indolepyruvate decarboxylase from2 enterobacter cloacae
36 | d1wdia_ |
| not modelled | 5.5 | 38 | Fold:QueA-like Superfamily:QueA-like Family:QueA-like
37 | c3cf4G_ |
| not modelled | 5.2 | 9 | PDB header:oxidoreductase Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0