15/01/2012 23:55:45 : INFO  : Run start: Sun Jan 15 23:55:44 GMT 2012
15/01/2012 23:55:50 : INFO  : Initialised job
15/01/2012 23:55:51 : INFO  : Renaming log file 'phyre2_20120115_235543.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/phyre_20120115_235543.log'
15/01/2012 23:55:53 : INFO  : Initialised job:
Sequence
>batch____
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDD
TRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDAQRREKTLLAVEIKLAQKDFAGAQN
LLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQA
LSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKM
LPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPA
ADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKI
YDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNIC
YFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFG
STSELRAGVNGGSGIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYI
VATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGN
LPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVI
NRNLSWLQYQQGQVVPVS

15/01/2012 23:55:54 : INFO  : Checked sequence
15/01/2012 23:55:57 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 23:55:58 : INFO  : PSI-BLAST 3 iterations
15/01/2012 23:58:47 : INFO  : PSI-BLAST 5 iterations
16/01/2012 00:02:22 : INFO  : Finished PSI-BLAST
16/01/2012 00:02:25 : INFO  : Running Buildali to generate a3m file
16/01/2012 00:12:19 : INFO  : Converting to HMM
16/01/2012 00:12:29 : INFO  : Calibrating HMM
16/01/2012 00:12:58 : INFO  : Searching HMM database
16/01/2012 00:29:06 : INFO  : Finished buildali
16/01/2012 00:29:08 : INFO  : Predicting secondary structure
16/01/2012 00:29:16 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 00:29:18 : INFO  : Predicting Disordered regions
16/01/2012 00:29:22 : INFO  : Predicted Disorder (Disopred)
16/01/2012 00:29:23 : INFO  : Running memsat_svm check
16/01/2012 00:34:38 : INFO  : Running memsat_svm full
16/01/2012 00:41:48 : INFO  : Predicted Transmembrane (memsat_svm) ID '9aa65b035587d68c'
16/01/2012 00:41:49 : INFO  : Initialising fold library search
16/01/2012 00:41:52 : INFO  : Initialised search input
16/01/2012 00:41:54 : INFO  : Building Ensemble models
16/01/2012 00:41:57 : INFO  : Building hh.d3ckma1.model.1.pdb
16/01/2012 00:42:11 : INFO  : Building hh.c3fflC_.model.2.pdb
16/01/2012 00:42:23 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/hh.c3fflC_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/c3fflC_.100.pdb
16/01/2012 00:42:27 : INFO  : Building hh.c2xcbA_.model.3.pdb
16/01/2012 00:42:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/hh.c2xcbA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/c2xcbA_.101.pdb
16/01/2012 00:42:41 : INFO  : Building hh.c2kc7A_.model.4.pdb
16/01/2012 00:42:52 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/hh.c2kc7A_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/c2kc7A_.102.pdb
16/01/2012 00:42:57 : INFO  : Building hh.c3k9iA_.model.5.pdb
16/01/2012 00:43:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/hh.c3k9iA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/c3k9iA_.107.pdb
16/01/2012 00:43:11 : INFO  : Building hh.c3hymB_.model.6.pdb
16/01/2012 00:43:23 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/hh.c3hymB_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/c3hymB_.108.pdb
16/01/2012 00:43:27 : INFO  : Building hh.c2r5sB_.model.7.pdb
16/01/2012 00:43:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/hh.c2r5sB_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/c2r5sB_.109.pdb
16/01/2012 00:43:40 : INFO  : Building hh.c3pe3D_.model.8.pdb
16/01/2012 00:43:52 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/hh.c3pe3D_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9aa65b035587d68c/c3pe3D_.111.pdb
16/01/2012 00:43:55 : INFO  : Building d3ckma1.1.pdb
16/01/2012 00:44:08 : INFO  : Building d1qo0a_.2.pdb
16/01/2012 00:44:21 : INFO  : Building c3hutA_.3.pdb
16/01/2012 00:44:33 : INFO  : Building c3i09A_.4.pdb
16/01/2012 00:44:46 : INFO  : Building c3t0nA_.5.pdb
16/01/2012 00:44:59 : INFO  : Building d2liva_.6.pdb
16/01/2012 00:45:13 : INFO  : Building c3snrA_.7.pdb
16/01/2012 00:45:26 : INFO  : Building c3td9A_.8.pdb
16/01/2012 00:45:39 : INFO  : Building c3n0wA_.9.pdb
16/01/2012 00:45:52 : INFO  : Building c3n0xA_.10.pdb
16/01/2012 00:46:06 : INFO  : Building c3lkbB_.11.pdb
16/01/2012 00:46:20 : INFO  : Building d1usga_.12.pdb
16/01/2012 00:46:33 : INFO  : Building c3h5lB_.13.pdb
16/01/2012 00:46:47 : INFO  : Building c3i45A_.14.pdb
16/01/2012 00:47:00 : INFO  : Building c3ip5A_.15.pdb
16/01/2012 00:47:12 : INFO  : Building c3sg0A_.16.pdb
16/01/2012 00:47:26 : INFO  : Building c3lopA_.17.pdb
16/01/2012 00:47:38 : INFO  : Building c3eafA_.18.pdb
16/01/2012 00:47:52 : INFO  : Building d1jdpa_.19.pdb
16/01/2012 00:48:04 : INFO  : Building c1jdpA_.20.pdb
16/01/2012 00:50:17 : INFO  : Finished HH model building
16/01/2012 00:50:19 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 00:51:32 : INFO  : html domain output complete ID '9aa65b035587d68c'
16/01/2012 03:44:20 : INFO  : Run end  : Mon Jan 16 03:44:19 GMT 2012
