BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (96 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9JMR7 Uncharacterized protein yuaX n=6 Tax=Enterobacte... 197 6e-50 UniRef50_D0ZGI3 Putative uncharacterized protein n=1 Tax=Edwards... 82 6e-15 UniRef50_B0UF10 Putative uncharacterized protein n=1 Tax=Methylo... 78 1e-13 UniRef50_UPI0001A454BE hypothetical protein NsubN_05746 n=1 Tax=... 50 2e-05 >UniRef50_Q9JMR7 Uncharacterized protein yuaX n=6 Tax=Enterobacteriaceae RepID=YUAX_ECOLI Length = 96 Score = 197 bits (502), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 96/96 (100%), Positives = 96/96 (100%) Query: 1 MGVKITGLDKMQKQLKEVERATEALNGSYDVRFDANDPSSIENAIQEAYSMVDERASGYA 60 MGVKITGLDKMQKQLKEVERATEALNGSYDVRFDANDPSSIENAIQEAYSMVDERASGYA Sbjct: 1 MGVKITGLDKMQKQLKEVERATEALNGSYDVRFDANDPSSIENAIQEAYSMVDERASGYA 60 Query: 61 TNPMVSPLIEHMKENLRQQILDSAEQQRQESGQDGD 96 TNPMVSPLIEHMKENLRQQILDSAEQQRQESGQDGD Sbjct: 61 TNPMVSPLIEHMKENLRQQILDSAEQQRQESGQDGD 96 >UniRef50_D0ZGI3 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZGI3_EDWTE Length = 95 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 1/87 (1%) Query: 3 VKITGLDKMQKQLKEVERATEALNGSY-DVRFDANDPSSIENAIQEAYSMVDERASGYAT 61 +KITGLDK+QK+LK + A L+G+ V FD DP+SIENAIQ+ +VDER S Y++ Sbjct: 2 LKITGLDKLQKELKVAQLALSGLDGNLGTVHFDPQDPASIENAIQKINQIVDERVSQYSS 61 Query: 62 NPMVSPLIEHMKENLRQQILDSAEQQR 88 N ++ PL E MK+ R+ ++ A + R Sbjct: 62 NSIIGPLAEQMKQAYRENLIQKATEFR 88 >UniRef50_B0UF10 Putative uncharacterized protein n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UF10_METS4 Length = 99 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 36/75 (48%), Positives = 53/75 (70%), Gaps = 1/75 (1%) Query: 3 VKITGLDKMQKQLKEVERATEALNGSY-DVRFDANDPSSIENAIQEAYSMVDERASGYAT 61 +KITGLD+M + L++ +RA L+G VRFD NDP+SIE AIQ A++++D + Y + Sbjct: 2 LKITGLDEMSRTLEQAQRAFADLDGELGTVRFDPNDPASIEAAIQHAHALIDGKLGDYVS 61 Query: 62 NPMVSPLIEHMKENL 76 NP+V+P+IE KE Sbjct: 62 NPLVAPMIEASKERF 76 >UniRef50_UPI0001A454BE hypothetical protein NsubN_05746 n=1 Tax=Neisseria subflava NJ9703 RepID=UPI0001A454BE Length = 87 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%) Query: 30 DVRFDANDPSSIENAIQEAYSMVDERASGYATNPMVSPLIEHMKENLRQQILDSAEQQRQ 89 +++FD DP SIE+AIQE +D NP++S L+E +KEN R +I+ A + R Sbjct: 24 NLKFDPFDPLSIESAIQEYNYGLDSIVGDEINNPIISSLLEELKENARSEIIREAAEARL 83 Query: 90 ESGQ 93 + G+ Sbjct: 84 KKGE 87 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9JMR7 Uncharacterized protein yuaX n=6 Tax=Enterobacte... 137 8e-32 UniRef50_D0ZGI3 Putative uncharacterized protein n=1 Tax=Edwards... 124 1e-27 UniRef50_B0UF10 Putative uncharacterized protein n=1 Tax=Methylo... 109 2e-23 UniRef50_UPI0001A454BE hypothetical protein NsubN_05746 n=1 Tax=... 91 8e-18 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_Q9JMR7 Uncharacterized protein yuaX n=6 Tax=Enterobacteriaceae RepID=YUAX_ECOLI Length = 96 Score = 137 bits (346), Expect = 8e-32, Method: Composition-based stats. Identities = 96/96 (100%), Positives = 96/96 (100%) Query: 1 MGVKITGLDKMQKQLKEVERATEALNGSYDVRFDANDPSSIENAIQEAYSMVDERASGYA 60 MGVKITGLDKMQKQLKEVERATEALNGSYDVRFDANDPSSIENAIQEAYSMVDERASGYA Sbjct: 1 MGVKITGLDKMQKQLKEVERATEALNGSYDVRFDANDPSSIENAIQEAYSMVDERASGYA 60 Query: 61 TNPMVSPLIEHMKENLRQQILDSAEQQRQESGQDGD 96 TNPMVSPLIEHMKENLRQQILDSAEQQRQESGQDGD Sbjct: 61 TNPMVSPLIEHMKENLRQQILDSAEQQRQESGQDGD 96 >UniRef50_D0ZGI3 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZGI3_EDWTE Length = 95 Score = 124 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 41/93 (44%), Positives = 63/93 (67%), Gaps = 1/93 (1%) Query: 3 VKITGLDKMQKQLKEVERATEALNGSY-DVRFDANDPSSIENAIQEAYSMVDERASGYAT 61 +KITGLDK+QK+LK + A L+G+ V FD DP+SIENAIQ+ +VDER S Y++ Sbjct: 2 LKITGLDKLQKELKVAQLALSGLDGNLGTVHFDPQDPASIENAIQKINQIVDERVSQYSS 61 Query: 62 NPMVSPLIEHMKENLRQQILDSAEQQRQESGQD 94 N ++ PL E MK+ R+ ++ A + R ++ ++ Sbjct: 62 NSIIGPLAEQMKQAYRENLIQKATEFRIKNNEE 94 >UniRef50_B0UF10 Putative uncharacterized protein n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UF10_METS4 Length = 99 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 36/75 (48%), Positives = 53/75 (70%), Gaps = 1/75 (1%) Query: 3 VKITGLDKMQKQLKEVERATEALNGSY-DVRFDANDPSSIENAIQEAYSMVDERASGYAT 61 +KITGLD+M + L++ +RA L+G VRFD NDP+SIE AIQ A++++D + Y + Sbjct: 2 LKITGLDEMSRTLEQAQRAFADLDGELGTVRFDPNDPASIEAAIQHAHALIDGKLGDYVS 61 Query: 62 NPMVSPLIEHMKENL 76 NP+V+P+IE KE Sbjct: 62 NPLVAPMIEASKERF 76 >UniRef50_UPI0001A454BE hypothetical protein NsubN_05746 n=1 Tax=Neisseria subflava NJ9703 RepID=UPI0001A454BE Length = 87 Score = 91.3 bits (225), Expect = 8e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 39/65 (60%) Query: 29 YDVRFDANDPSSIENAIQEAYSMVDERASGYATNPMVSPLIEHMKENLRQQILDSAEQQR 88 +++FD DP SIE+AIQE +D NP++S L+E +KEN R +I+ A + R Sbjct: 23 INLKFDPFDPLSIESAIQEYNYGLDSIVGDEINNPIISSLLEELKENARSEIIREAAEAR 82 Query: 89 QESGQ 93 + G+ Sbjct: 83 LKKGE 87 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.303 0.130 0.325 Lambda K H 0.267 0.0409 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 311,328,885 Number of Sequences: 3077464 Number of extensions: 9906600 Number of successful extensions: 35108 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35095 Number of HSP's gapped (non-prelim): 9 length of query: 96 length of database: 1,040,396,356 effective HSP length: 65 effective length of query: 31 effective length of database: 840,361,196 effective search space: 26051197076 effective search space used: 26051197076 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.3 bits) S2: 87 (38.1 bits)