14/01/2012 19:40:20 : INFO  : Run start: Sat Jan 14 19:40:20 GMT 2012
14/01/2012 19:40:24 : INFO  : Initialised job
14/01/2012 19:40:26 : INFO  : Renaming log file 'phyre2_20120114_194019.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/98fca65dd928d930/phyre_20120114_194019.log'
14/01/2012 19:40:26 : INFO  : Initialised job:
Sequence
>batch____
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDL
FLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKL
FSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKI
NSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRW
QASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDES
ASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWY
EDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRRE
VSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMV
DVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYV
MKLAQMEPGAAWQWLPITWQPL

14/01/2012 19:40:27 : INFO  : Checked sequence
14/01/2012 19:40:29 : INFO  : Finding homologues with PSI-BLAST
14/01/2012 19:40:30 : INFO  : PSI-BLAST 3 iterations
14/01/2012 19:42:39 : INFO  : PSI-BLAST 5 iterations
14/01/2012 19:44:03 : INFO  : Finished PSI-BLAST
14/01/2012 19:44:04 : INFO  : Running Buildali to generate a3m file
14/01/2012 19:45:44 : INFO  : Converting to HMM
14/01/2012 19:45:45 : INFO  : Calibrating HMM
14/01/2012 19:46:06 : INFO  : Searching HMM database
14/01/2012 19:58:40 : INFO  : Finished buildali
14/01/2012 19:58:41 : INFO  : Predicting secondary structure
14/01/2012 19:58:51 : INFO  : Predicted secondary structure (PSI-Pred)
14/01/2012 19:58:53 : INFO  : Predicting Disordered regions
14/01/2012 19:58:57 : INFO  : Predicted Disorder (Disopred)
14/01/2012 19:58:58 : INFO  : Running memsat_svm check
14/01/2012 20:01:40 : INFO  : Running memsat_svm full
14/01/2012 20:07:11 : INFO  : Predicted Transmembrane (memsat_svm) ID '98fca65dd928d930'
14/01/2012 20:07:13 : INFO  : Initialising fold library search
14/01/2012 20:07:15 : INFO  : Initialised search input
14/01/2012 20:07:17 : INFO  : Building Ensemble models
14/01/2012 20:07:20 : INFO  : Building hh.d1b24a1.model.1.pdb
14/01/2012 20:07:31 : INFO  : Building d1b24a1.1.pdb
14/01/2012 20:07:41 : INFO  : Building d2piaa3.2.pdb
14/01/2012 20:07:51 : INFO  : Building d1cwea_.3.pdb
14/01/2012 20:08:02 : INFO  : Building d2afja1.4.pdb
14/01/2012 20:08:14 : INFO  : Building c2z4dA_.5.pdb
14/01/2012 20:08:24 : INFO  : Building c3ts3D_.6.pdb
14/01/2012 20:08:35 : INFO  : Building c3uatA_.7.pdb
14/01/2012 20:08:44 : INFO  : Building c2w9vA_.8.pdb
14/01/2012 20:08:54 : INFO  : Building c2i46A_.9.pdb
14/01/2012 20:09:04 : INFO  : Building d1eg3a2.10.pdb
14/01/2012 20:09:13 : INFO  : Building d1rkua_.11.pdb
14/01/2012 20:09:23 : INFO  : Building d2b6ca1.12.pdb
14/01/2012 20:09:31 : INFO  : Building d1y0ja1.13.pdb
14/01/2012 20:09:41 : INFO  : Building c2p11A_.14.pdb
14/01/2012 20:09:49 : INFO  : Building c3u7zA_.15.pdb
14/01/2012 20:09:58 : INFO  : Building d1a3qa1.16.pdb
14/01/2012 20:10:08 : INFO  : Building d2f69a1.17.pdb
14/01/2012 20:10:18 : INFO  : Building d2nn6g3.18.pdb
14/01/2012 20:10:28 : INFO  : Building c3m9bK_.19.pdb
14/01/2012 20:10:37 : INFO  : Building c1q90R_.20.pdb
14/01/2012 20:10:55 : INFO  : Finished HH model building
14/01/2012 20:10:56 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
14/01/2012 20:11:43 : INFO  : html domain output complete ID '98fca65dd928d930'
14/01/2012 20:16:56 : INFO  : Run end  : Sat Jan 14 20:16:55 GMT 2012
