Phyre 2 Results for P17994

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Email | l.a.kelley@imperial.ac.uk
Description | P17994
Date | Thu Jan 5 11:36:28 GMT 2012
Unique Job ID | 98fca65dd928d930

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1b24a1
Top template information
Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Group I mobile intron endonuclease
Confidence and coverage
Confidence: | 26.8% | Coverage: | 2%
11 residues ( 2% of your sequence) have been modelled with 26.8% confidence by the single highest scoring template.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | G | E | K | K | A | K | G | W | R | F | Y | G | L | V | G | F | G | A | I | A | L | L | S | A | G | V | W | A | L | Q | Y | A | G | S | G | P | E | K | T | L | S | P | L | V | V | H | N | N | L | Q | I | D | L | N | E | P | D | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | F | L | D | S | D | S | L | S | Q | L | P | K | D | L | L | T | I | P | F | L | H | D | V | L | S | E | D | F | V | F | Y | Y | Q | N | H | A | D | R | L | G | I | E | G | S | I | R | R | I | V | Y | E | H | D | L | T | L | K | D | K | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | F | S | S | L | L | D | Q | P | A | Q | A | A | L | W | H | D | K | Q | G | H | L | S | H | Y | M | V | L | I | Q | R | S | G | L | S | K | L | L | E | P | L | L | F | A | A | T | S | D | S | Q | L | S | K | T | E | I | S | S | I | K | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | N | S | E | T | V | P | V | Y | Q | L | R | Y | N | G | N | N | A | L | M | F | A | T | Y | Q | D | K | M | L | V | F | S | S | T | D | M | L | F | K | D | D | Q | Q | D | T | E | A | T | A | I | A | G | D | L | L | S | G | K | K | R | W
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | Q | A | S | F | G | L | E | E | R | T | A | E | K | T | P | V | R | Q | R | I | V | V | S | A | R | W | L | G | F | G | Y | Q | R | L | M | P | S | F | A | G | V | R | F | E | M | G | N | D | G | W | H | S | F | V | A | L | N | D | E | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | A | S | V | D | A | S | F | D | F | T | P | V | W | N | S | M | P | A | G | A | S | F | C | V | A | V | P | Y | S | H | G | I | A | E | E | M | L | S | H | I | S | Q | E | N | D | K | L | N | G | A | L | D | G | A | A | G | L | C | W | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | E | D | S | K | L | Q | T | P | L | F | V | G | Q | F | D | G | T | A | E | Q | A | Q | L | P | G | K | L | F | T | Q | N | I | G | A | H | E | S | K | A | P | E | G | V | L | P | V | S | Q | T | Q | Q | G | E | A | Q | I | W | R | R | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | V | S | S | R | Y | G | Q | Y | P | K | A | Q | A | A | Q | P | D | Q | L | M | S | D | Y | F | F | R | V | S | L | A | M | Q | N | K | T | L | L | F | S | L | D | D | T | L | V | N | N | A | L | Q | T | L | N | K | T | R | P | A | M | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | D | V | I | P | T | D | G | I | V | P | L | Y | I | N | P | Q | G | I | A | K | L | L | R | N | E | T | L | T | S | L | P | K | N | L | E | P | V | F | Y | N | A | A | Q | T | L | L | M | P | K | L | D | A | L | S | Q | Q | P | R | Y | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | .
Sequence |  | M | K | L | A | Q | M | E | P | G | A | A | W | Q | W | L | P | I | T | W | Q | P | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1b24a1 |

### PDB 1b24 chain A domain 1

Region: 187 - 197
Aligned: 11
Modelled: 11
Confidence: 26.8%
Identity: 45%
Fold: Homing endonuclease-like
Superfamily: Homing endonucleases
Family: Group I mobile intron endonuclease

Phyre2
2 |
| d2piaa3 |

### PDB 2pia chain A domain 3

Region: 433 - 470
Aligned: 38
Modelled: 38
Confidence: 26.3%
Identity: 11%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: 2Fe-2S ferredoxin-like
Family: 2Fe-2S ferredoxin domains from multidomain proteins

Phyre2
3 |
| d1cwea_ |

### PDB 1cwe chain A

Region: 86 - 107
Aligned: 20
Modelled: 22
Confidence: 22.8%
Identity: 30%
Fold: SH2-like
Superfamily: SH2 domain
Family: SH2 domain

Phyre2
4 |
| d2afja1 |

### PDB 2afj chain A domain 1

Region: 415 - 493
Aligned: 77
Modelled: 79
Confidence: 15.1%
Identity: 21%
Fold: Concanavalin A-like lectins/glucanases
Superfamily: Concanavalin A-like lectins/glucanases
Family: SPRY domain

Phyre2
5 |
| c2z4dA_ |

### PDB 2z4d chain A

Region: 163 - 200
Aligned: 32
Modelled: 32
Confidence: 14.4%
Identity: 13%
PDB header:nuclear protein
Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn13;
PDBTitle: nmr structures of yeast proteasome component rpn13

Phyre2
6 |
| c3ts3D_ |

### PDB 3ts3 chain D

Region: 277 - 316
Aligned: 40
Modelled: 40
Confidence: 10.1%
Identity: 13%
PDB header:viral protein
Chain: D: PDB Molecule:capsid polyprotein;
PDBTitle: crystal structure of the projection domain of the turkey astrovirus2 capsid protein at 1.5 angstrom resolution

Phyre2
7 |
| c3uatA_ |

### PDB 3uat chain A

Region: 275 - 307
Aligned: 32
Modelled: 33
Confidence: 9.8%
Identity: 28%
PDB header:peptide binding protein
Chain: A: PDB Molecule:disks large homolog 1;
PDBTitle: guanylate kinase domains of the maguk family scaffold proteins as2 specific phospho-protein binding modules

Phyre2
8 |
| c2w9vA_ |

### PDB 2w9v chain A

Region: 410 - 425
Aligned: 16
Modelled: 16
Confidence: 9.3%
Identity: 38%
PDB header:toxin
Chain: A: PDB Molecule:short disintegrin jerdostatin;
PDBTitle: solution structure of jerdostatin from trimeresurus2 jerdonii with end c-terminal residues n45g46 deleted

Phyre2
9 |
| c2i46A_ |

### PDB 2i46 chain A

Region: 80 - 116
Aligned: 37
Modelled: 37
Confidence: 8.9%
Identity: 11%
PDB header:protein binding
Chain: A: PDB Molecule:adrenocortical dysplasia protein homolog;
PDBTitle: crystal structure of human tpp1

Phyre2
10 |
| d1eg3a2 |

### PDB 1eg3 chain A domain 2

Region: 55 - 134
Aligned: 70
Modelled: 80
Confidence: 8.6%
Identity: 26%
Fold: EF Hand-like
Superfamily: EF-hand
Family: EF-hand modules in multidomain proteins

Phyre2
11 |
| d1rkua_ |

### PDB 1rku chain A

Region: 454 - 476
Aligned: 23
Modelled: 23
Confidence: 8.5%
Identity: 13%
Fold: HAD-like
Superfamily: HAD-like
Family: Homoserine kinase ThrH

Phyre2
12 |
| d2b6ca1 |

### PDB 2b6c chain A domain 1

Region: 465 - 512
Aligned: 39
Modelled: 48
Confidence: 7.9%
Identity: 26%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: BC3264-like

Phyre2
13 |
| d1y0ja1 |

### PDB 1y0j chain A domain 1

Region: 310 - 325
Aligned: 16
Modelled: 16
Confidence: 7.3%
Identity: 38%
Fold: Glucocorticoid receptor-like (DNA-binding domain)
Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
Family: Erythroid transcription factor GATA-1

Phyre2
14 |
| c2p11A_ |

### PDB 2p11 chain A

Region: 452 - 467
Aligned: 16
Modelled: 16
Confidence: 7.2%
Identity: 38%
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative haloacid dehalogenase-like hydrolase2 (bxe_b1342) from burkholderia xenovorans lb400 at 2.20 a resolution

Phyre2
15 |
| c3u7zA_ |

### PDB 3u7z chain A

Region: 270 - 306
Aligned: 36
Modelled: 37
Confidence: 7.1%
Identity: 11%
PDB header:metal binding protein
Chain: A: PDB Molecule:putative metal binding protein rumgna_00854;
PDBTitle: crystal structure of a putative metal binding protein rumgna_008542 (zp_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a3 resolution

Phyre2
16 |
| d1a3qa1 |

### PDB 1a3q chain A domain 1

Region: 283 - 309
Aligned: 27
Modelled: 27
Confidence: 7.1%
Identity: 19%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: E set domains
Family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain

Phyre2
17 |
| d2f69a1 |

### PDB 2f69 chain A domain 1

Region: 356 - 360
Aligned: 5
Modelled: 5
Confidence: 7.1%
Identity: 60%
Fold: open-sided beta-meander
Superfamily: Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
Family: Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain

Phyre2
18 |
| d2nn6g3 |

### PDB 2nn6 chain G domain 3

Region: 441 - 491
Aligned: 44
Modelled: 51
Confidence: 7.0%
Identity: 27%
Fold: Eukaryotic type KH-domain (KH-domain type I)
Superfamily: Eukaryotic type KH-domain (KH-domain type I)
Family: Eukaryotic type KH-domain (KH-domain type I)

Phyre2
19 |
| c3m9bK_ |

### PDB 3m9b chain K

Region: 142 - 213
Aligned: 71
Modelled: 71
Confidence: 6.9%
Identity: 10%
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa

Phyre2
20 |
| c1q90R_ |

### PDB 1q90 chain R

Region: 267 - 275
Aligned: 9
Modelled: 9
Confidence: 6.9%
Identity: 33%
PDB header:photosynthesis
Chain: R: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1b24a1 |
|  | 26.8 | 45 | Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Group I mobile intron endonuclease
2 | d2piaa3 |
|  | 26.3 | 11 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
3 | d1cwea_ |
|  | 22.8 | 30 | Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain
4 | d2afja1 |
|  | 15.1 | 21 | Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:SPRY domain
5 | c2z4dA_ |
|  | 14.4 | 13 | PDB header:nuclear protein Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn13; PDBTitle: nmr structures of yeast proteasome component rpn13
6 | c3ts3D_ |
|  | 10.1 | 13 | PDB header:viral protein Chain: D: PDB Molecule:capsid polyprotein; PDBTitle: crystal structure of the projection domain of the turkey astrovirus2 capsid protein at 1.5 angstrom resolution
7 | c3uatA_ |
|  | 9.8 | 28 | PDB header:peptide binding protein Chain: A: PDB Molecule:disks large homolog 1; PDBTitle: guanylate kinase domains of the maguk family scaffold proteins as2 specific phospho-protein binding modules
8 | c2w9vA_ |
|  | 9.3 | 38 | PDB header:toxin Chain: A: PDB Molecule:short disintegrin jerdostatin; PDBTitle: solution structure of jerdostatin from trimeresurus2 jerdonii with end c-terminal residues n45g46 deleted
9 | c2i46A_ |
|  | 8.9 | 11 | PDB header:protein binding Chain: A: PDB Molecule:adrenocortical dysplasia protein homolog; PDBTitle: crystal structure of human tpp1
10 | d1eg3a2 |
|  | 8.6 | 26 | Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins
11 | d1rkua_ |
|  | 8.5 | 13 | Fold:HAD-like Superfamily:HAD-like Family:Homoserine kinase ThrH
12 | d2b6ca1 |
|  | 7.9 | 26 | Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:BC3264-like
13 | d1y0ja1 |
|  | 7.3 | 38 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1
14 | c2p11A_ |
|  | 7.2 | 38 | PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative haloacid dehalogenase-like hydrolase2 (bxe_b1342) from burkholderia xenovorans lb400 at 2.20 a resolution
15 | c3u7zA_ |
|  | 7.1 | 11 | PDB header:metal binding protein Chain: A: PDB Molecule:putative metal binding protein rumgna_00854; PDBTitle: crystal structure of a putative metal binding protein rumgna_008542 (zp_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a3 resolution
16 | d1a3qa1 |
|  | 7.1 | 19 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
17 | d2f69a1 |
|  | 7.1 | 60 | Fold:open-sided beta-meander Superfamily:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Family:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
18 | d2nn6g3 |
|  | 7.0 | 27 | Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I)
19 | c3m9bK_ |
|  | 6.9 | 10 | PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
20 | c1q90R_ |
|  | 6.9 | 33 | PDB header:photosynthesis Chain: R: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
21 | d1q90r_ |
| not modelled | 6.9 | 33 | Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor
22 | c3pgeA_ |
| not modelled | 6.9 | 12 | PDB header:dna binding protein Chain: A: PDB Molecule:sumo-modified proliferating cell nuclear antigen; PDBTitle: structure of sumoylated pcna
23 | d2uubc1 |
| not modelled | 6.9 | 31 | Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II)
24 | d1twfc1 |
| not modelled | 6.9 | 29 | Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain
25 | d1whya_ |
| not modelled | 6.8 | 22 | Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD
26 | d1ji8a_ |
| not modelled | 6.8 | 26 | Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase Family:DsrC, the gamma subunit of dissimilatory sulfite reductase
27 | c2kaeA_ |
| not modelled | 6.3 | 25 | PDB header:transcription/dna Chain: A: PDB Molecule:gata-type transcription factor; PDBTitle: data-driven model of med1:dna complex
28 | c2l25A_ |
| not modelled | 5.9 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: np_888769.1
29 | c1a3qA_ |
| not modelled | 5.7 | 19 | PDB header:transcription/dna Chain: A: PDB Molecule:protein (nuclear factor kappa-b p52); PDBTitle: human nf-kappa-b p52 bound to dna
30 | c3s2xB_ |
| not modelled | 5.7 | 37 | PDB header:transferase Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha; PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain
31 | d2fug31 |
| not modelled | 5.4 | 16 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
32 | c2l1qA_ |
| not modelled | 5.4 | 58 | PDB header:antimicrobial protein Chain: A: PDB Molecule:liver-expressed antimicrobial peptide 2; PDBTitle: solution structure of human liver expressed antimicrobial peptide 2
33 | d2vuti1 |
| not modelled | 5.3 | 43 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1
34 | d2ieca1 |
| not modelled | 5.3 | 24 | Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like
35 | d1gjwa1 |
| not modelled | 5.2 | 28 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
36 | d1f2fa_ |
| not modelled | 5.2 | 50 | Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain
37 | c2kvoA_ |
| not modelled | 5.0 | 17 | PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii reaction center psb28 protein; PDBTitle: solution nmr structure of photosystem ii reaction center psb28 protein2 from synechocystis sp.(strain pcc 6803), northeast structural3 genomics consortium target sgr171
38 | c2de4B_ |
| not modelled | 5.0 | 20 | PDB header:hydrolase Chain: B: PDB Molecule:dibenzothiophene desulfurization enzyme b; PDBTitle: crystal structure of dszb c27s mutant in complex with biphenyl-2-2 sulfinic acid

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0