Phyre 2 Results for P0CF30

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Email | l.a.kelley@imperial.ac.uk
Description | P0CF30
Date | Thu Jan 5 11:30:52 GMT 2012
Unique Job ID | 98a1d9ecca7969b2

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1cxqa_
Top template information
Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
Confidence and coverage
Confidence: | 96.9% | Coverage: | 74%
124 residues ( 74% of your sequence) have been modelled with 96.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | P | G | N | S | P | H | Y | G | R | W | P | Q | H | D | F | T | S | L | K | K | L | R | P | Q | S | V | T | S | R | I | Q | P | G | S | D | V | I | V | C | A | E | M | D | E | Q | W | G | Y | V | G | A | K | S | R | Q | R | W | L | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | Y | A | Y | D | S | L | R | K | T | V | V | A | H | V | F | G | E | R | T | M | A | T | L | G | R | L | M | S | L | L | S | P | F | D | V | V | I | W | M | T | D | G | W | P | L | Y | E | S | R | L | K | G | K | L | H | V | I | S | K | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | .
Sequence |  | Y | T | Q | R | I | E | R | H | N | L | N | L | R | Q | H | L | A | R | L | G | R | K | S | L | S | F | S | K | S | V | E | L | H | D | K | V | I | G | H | Y | L | N | I | K | H | Y | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1cxqa_ |

### PDB 1cxq chain A

Region: 40 - 165
Aligned: 124
Modelled: 126
Confidence: 96.9%
Identity: 14%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2
2 |
| d1hyva_ |

### PDB 1hyv chain A

Region: 42 - 157
Aligned: 109
Modelled: 116
Confidence: 96.7%
Identity: 17%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2
3 |
| d1exqa_ |

### PDB 1exq chain A

Region: 42 - 157
Aligned: 110
Modelled: 116
Confidence: 96.5%
Identity: 14%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2
4 |
| d1asua_ |

### PDB 1asu chain A

Region: 24 - 166
Aligned: 132
Modelled: 143
Confidence: 96.0%
Identity: 15%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2
5 |
| c1ex4A_ |

### PDB 1ex4 chain A

Region: 42 - 157
Aligned: 105
Modelled: 116
Confidence: 94.8%
Identity: 16%
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: hiv-1 integrase catalytic core and c-terminal domain

Phyre2
6 |
| d1c6va_ |

### PDB 1c6v chain A

Region: 55 - 157
Aligned: 103
Modelled: 103
Confidence: 94.2%
Identity: 16%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2
7 |
| c1k6yB_ |

### PDB 1k6y chain B

Region: 55 - 157
Aligned: 103
Modelled: 103
Confidence: 94.2%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase

Phyre2
8 |
| c3f9kV_ |

### PDB 3f9k chain V

Region: 45 - 157
Aligned: 108
Modelled: 113
Confidence: 93.2%
Identity: 12%
PDB header:viral protein, recombination
Chain: V: PDB Molecule:integrase;
PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd

Phyre2
9 |
| d1c0ma2 |

### PDB 1c0m chain A domain 2

Region: 40 - 160
Aligned: 119
Modelled: 121
Confidence: 93.1%
Identity: 18%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2
10 |
| c3nf9A_ |

### PDB 3nf9 chain A

Region: 38 - 157
Aligned: 114
Modelled: 120
Confidence: 92.6%
Identity: 17%
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:integrase;
PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design

Phyre2
11 |
| c1c0mA_ |

### PDB 1c0m chain A

Region: 40 - 141
Aligned: 100
Modelled: 102
Confidence: 89.5%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:protein (integrase);
PDBTitle: crystal structure of rsv two-domain integrase

Phyre2
12 |
| c3dlrA_ |

### PDB 3dlr chain A

Region: 39 - 160
Aligned: 119
Modelled: 122
Confidence: 88.7%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase

Phyre2
13 |
| c1bcoA_ |

### PDB 1bco chain A

Region: 58 - 167
Aligned: 108
Modelled: 110
Confidence: 84.0%
Identity: 10%
PDB header:transposase
Chain: A: PDB Molecule:bacteriophage mu transposase;
PDBTitle: bacteriophage mu transposase core domain

Phyre2
14 |
| d1bcoa2 |

### PDB 1bco chain A domain 2

Region: 56 - 167
Aligned: 108
Modelled: 112
Confidence: 69.1%
Identity: 13%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: mu transposase, core domain

Phyre2
15 |
| c3kksB_ |

### PDB 3kks chain B

Region: 55 - 167
Aligned: 111
Modelled: 113
Confidence: 66.1%
Identity: 13%
PDB header:dna binding protein
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii

Phyre2
16 |
| c2k8fB_ |

### PDB 2k8f chain B

Region: 79 - 95
Aligned: 17
Modelled: 17
Confidence: 45.4%
Identity: 29%
PDB header:transferase/transcription
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: structural basis for the regulation of p53 function by p300

Phyre2
17 |
| c3he5D_ |

### PDB 3he5 chain D

Region: 129 - 158
Aligned: 30
Modelled: 30
Confidence: 36.2%
Identity: 30%
PDB header:de novo protein
Chain: D: PDB Molecule:synzip2;
PDBTitle: heterospecific coiled-coil pair synzip2:synzip1

Phyre2
18 |
| c3hpgC_ |

### PDB 3hpg chain C

Region: 58 - 157
Aligned: 95
Modelled: 100
Confidence: 34.1%
Identity: 15%
PDB header:transferase
Chain: C: PDB Molecule:integrase;
PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces

Phyre2
19 |
| c1q2iA_ |

### PDB 1q2i chain A

Region: 79 - 93
Aligned: 15
Modelled: 15
Confidence: 20.7%
Identity: 27%
PDB header:antitumor protein
Chain: A: PDB Molecule:pnc27;
PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells

Phyre2
20 |
| c3l2tB_ |

### PDB 3l2t chain B

Region: 40 - 157
Aligned: 117
Modelled: 118
Confidence: 18.9%
Identity: 8%
PDB header:recombination/dna
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir)

Phyre2
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47 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1cxqa_ |
|  | 96.9 | 14 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
2 | d1hyva_ |
|  | 96.7 | 17 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
3 | d1exqa_ |
|  | 96.5 | 14 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
4 | d1asua_ |
|  | 96.0 | 15 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
5 | c1ex4A_ |
|  | 94.8 | 16 | PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain
6 | d1c6va_ |
|  | 94.2 | 16 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
7 | c1k6yB_ |
|  | 94.2 | 14 | PDB header:transferase Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase
8 | c3f9kV_ |
|  | 93.2 | 12 | PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd
9 | d1c0ma2 |
|  | 93.1 | 18 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
10 | c3nf9A_ |
|  | 92.6 | 17 | PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design
11 | c1c0mA_ |
|  | 89.5 | 16 | PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase
12 | c3dlrA_ |
|  | 88.7 | 12 | PDB header:transferase Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase
13 | c1bcoA_ |
|  | 84.0 | 10 | PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain
14 | d1bcoa2 |
|  | 69.1 | 13 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:mu transposase, core domain
15 | c3kksB_ |
|  | 66.1 | 13 | PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii
16 | c2k8fB_ |
|  | 45.4 | 29 | PDB header:transferase/transcription Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: structural basis for the regulation of p53 function by p300
17 | c3he5D_ |
|  | 36.2 | 30 | PDB header:de novo protein Chain: D: PDB Molecule:synzip2; PDBTitle: heterospecific coiled-coil pair synzip2:synzip1
18 | c3hpgC_ |
|  | 34.1 | 15 | PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces
19 | c1q2iA_ |
|  | 20.7 | 27 | PDB header:antitumor protein Chain: A: PDB Molecule:pnc27; PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells
20 | c3l2tB_ |
|  | 18.9 | 8 | PDB header:recombination/dna Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir)
21 | d2olua2 |
| not modelled | 18.4 | 14 | Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase
22 | c2l14B_ |
| not modelled | 18.0 | 29 | PDB header:protein binding Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: structure of cbp nuclear coactivator binding domain in complex with2 p53 tad
23 | d1nvpd2 |
| not modelled | 16.6 | 38 | Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain
24 | d1st9a_ |
| not modelled | 16.5 | 25 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like
25 | c3dwkC_ |
| not modelled | 14.4 | 18 | PDB header:transferase Chain: C: PDB Molecule:penicillin-binding protein 2; PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer
26 | c2glfB_ |
| not modelled | 13.4 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:probable m18-family aminopeptidase 1; PDBTitle: crystal structure of aminipeptidase (m18 family) from thermotoga2 maritima
27 | d1nh2d2 |
| not modelled | 12.1 | 25 | Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain
28 | c3dacB_ |
| not modelled | 10.8 | 36 | PDB header:cell cycle Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: structure of the human mdmx protein bound to the p53 tumor2 suppressor transactivation domain
29 | c3dacP_ |
| not modelled | 10.7 | 36 | PDB header:cell cycle Chain: P: PDB Molecule:cellular tumor antigen p53; PDBTitle: structure of the human mdmx protein bound to the p53 tumor2 suppressor transactivation domain
30 | c2vknA_ |
| not modelled | 10.4 | 4 | PDB header:membrane protein Chain: A: PDB Molecule:protein ssu81; PDBTitle: yeast sho1 sh3 domain complexed with a peptide from pbs2
31 | c1nvpD_ |
| not modelled | 10.3 | 15 | PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia gamma chain; PDBTitle: human tfiia/tbp/dna complex
32 | d1qnta2 |
| not modelled | 9.8 | 20 | Fold:Ribonuclease H-like motif Superfamily:Methylated DNA-protein cysteine methyltransferase domain Family:Methylated DNA-protein cysteine methyltransferase domain
33 | d1e42a2 |
| not modelled | 9.7 | 6 | Fold:Subdomain of clathrin and coatomer appendage domain Superfamily:Subdomain of clathrin and coatomer appendage domain Family:Clathrin adaptor appendage, alpha and beta chain-specific domain
34 | c3a2aC_ |
| not modelled | 9.5 | 69 | PDB header:transport protein Chain: C: PDB Molecule:voltage-gated hydrogen channel 1; PDBTitle: the structure of the carboxyl-terminal domain of the human voltage-2 gated proton channel hv1
35 | c3bpjD_ |
| not modelled | 7.6 | 9 | PDB header:translation Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j; PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha
36 | c3pp5A_ |
| not modelled | 7.0 | 19 | PDB header:structural protein Chain: A: PDB Molecule:brk1; PDBTitle: high-resolution structure of the trimeric scar/wave complex precursor2 brk1
37 | c2juiA_ |
| not modelled | 7.0 | 33 | PDB header:toxin Chain: A: PDB Molecule:plne; PDBTitle: three-dimensional structure of the two peptides that2 constitute the two-peptide bacteriocin plantaracin ef
38 | c3pf6C_ |
| not modelled | 6.8 | 29 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein pp-luz7_gp033; PDBTitle: the structure of uncharacterized protein pp-luz7_gp033 from2 pseudomonas phage luz7.
39 | d1y7ea2 |
| not modelled | 6.6 | 11 | Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases
40 | d1v6fa_ |
| not modelled | 6.4 | 9 | Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Cofilin-like
41 | d1nc7a_ |
| not modelled | 6.4 | 24 | Fold:Hypothetical protein TM1070 Superfamily:Hypothetical protein TM1070 Family:Hypothetical protein TM1070
42 | d1t1ea2 |
| not modelled | 6.1 | 20 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors
43 | d2bg1a1 |
| not modelled | 6.1 | 18 | Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase
44 | c3p8cE_ |
| not modelled | 5.9 | 19 | PDB header:protein binding Chain: E: PDB Molecule:probable protein brick1; PDBTitle: structure and control of the actin regulatory wave complex
45 | c2gljR_ |
| not modelled | 5.7 | 11 | PDB header:hydrolase Chain: R: PDB Molecule: PDBTitle: crystal structure of aminopeptidase i from clostridium2 acetobutylicum
46 | d1ce7b2 |
| not modelled | 5.5 | 31 | Fold:beta-Trefoil Superfamily:Ricin B-like lectins Family:Ricin B-like
47 | d2je8a2 |
| not modelled | 5.4 | 21 | Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0