Phyre 2 Results for P0CF30

Email | l.a.kelley@imperial.ac.uk
Description | P0CF30
Date | Thu Jan 5 11:30:52 GMT 2012
Unique Job ID | 98a1d9ecca7969b2

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1cxqa_ |
|  | 96.9 | 14 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
2 | d1hyva_ |
|  | 96.7 | 17 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
3 | d1exqa_ |
|  | 96.5 | 14 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
4 | d1asua_ |
|  | 96.0 | 15 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
5 | c1ex4A_ |
|  | 94.8 | 16 | PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain
6 | d1c6va_ |
|  | 94.2 | 16 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
7 | c1k6yB_ |
|  | 94.2 | 14 | PDB header:transferase Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase
8 | c3f9kV_ |
|  | 93.2 | 12 | PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd
9 | d1c0ma2 |
|  | 93.1 | 18 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain
10 | c3nf9A_ |
|  | 92.6 | 17 | PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design
11 | c1c0mA_ |
|  | 89.5 | 16 | PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase
12 | c3dlrA_ |
|  | 88.7 | 12 | PDB header:transferase Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase
13 | c1bcoA_ |
|  | 84.0 | 10 | PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain
14 | d1bcoa2 |
|  | 69.1 | 13 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:mu transposase, core domain
15 | c3kksB_ |
|  | 66.1 | 13 | PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii
16 | c2k8fB_ |
|  | 45.4 | 29 | PDB header:transferase/transcription Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: structural basis for the regulation of p53 function by p300
17 | c3he5D_ |
|  | 36.2 | 30 | PDB header:de novo protein Chain: D: PDB Molecule:synzip2; PDBTitle: heterospecific coiled-coil pair synzip2:synzip1
18 | c3hpgC_ |
|  | 34.1 | 15 | PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces
19 | c1q2iA_ |
|  | 20.7 | 27 | PDB header:antitumor protein Chain: A: PDB Molecule:pnc27; PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells
20 | c3l2tB_ |
|  | 18.9 | 8 | PDB header:recombination/dna Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir)
21 | d2olua2 |
| not modelled | 18.4 | 14 | Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase
22 | c2l14B_ |
| not modelled | 18.0 | 29 | PDB header:protein binding Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: structure of cbp nuclear coactivator binding domain in complex with2 p53 tad
23 | d1nvpd2 |
| not modelled | 16.6 | 38 | Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain
24 | d1st9a_ |
| not modelled | 16.5 | 25 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like
25 | c3dwkC_ |
| not modelled | 14.4 | 18 | PDB header:transferase Chain: C: PDB Molecule:penicillin-binding protein 2; PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer
26 | c2glfB_ |
| not modelled | 13.4 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:probable m18-family aminopeptidase 1; PDBTitle: crystal structure of aminipeptidase (m18 family) from thermotoga2 maritima
27 | d1nh2d2 |
| not modelled | 12.1 | 25 | Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain
28 | c3dacB_ |
| not modelled | 10.8 | 36 | PDB header:cell cycle Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: structure of the human mdmx protein bound to the p53 tumor2 suppressor transactivation domain
29 | c3dacP_ |
| not modelled | 10.7 | 36 | PDB header:cell cycle Chain: P: PDB Molecule:cellular tumor antigen p53; PDBTitle: structure of the human mdmx protein bound to the p53 tumor2 suppressor transactivation domain
30 | c2vknA_ |
| not modelled | 10.4 | 4 | PDB header:membrane protein Chain: A: PDB Molecule:protein ssu81; PDBTitle: yeast sho1 sh3 domain complexed with a peptide from pbs2
31 | c1nvpD_ |
| not modelled | 10.3 | 15 | PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia gamma chain; PDBTitle: human tfiia/tbp/dna complex
32 | d1qnta2 |
| not modelled | 9.8 | 20 | Fold:Ribonuclease H-like motif Superfamily:Methylated DNA-protein cysteine methyltransferase domain Family:Methylated DNA-protein cysteine methyltransferase domain
33 | d1e42a2 |
| not modelled | 9.7 | 6 | Fold:Subdomain of clathrin and coatomer appendage domain Superfamily:Subdomain of clathrin and coatomer appendage domain Family:Clathrin adaptor appendage, alpha and beta chain-specific domain
34 | c3a2aC_ |
| not modelled | 9.5 | 69 | PDB header:transport protein Chain: C: PDB Molecule:voltage-gated hydrogen channel 1; PDBTitle: the structure of the carboxyl-terminal domain of the human voltage-2 gated proton channel hv1
35 | c3bpjD_ |
| not modelled | 7.6 | 9 | PDB header:translation Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j; PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha
36 | c3pp5A_ |
| not modelled | 7.0 | 19 | PDB header:structural protein Chain: A: PDB Molecule:brk1; PDBTitle: high-resolution structure of the trimeric scar/wave complex precursor2 brk1
37 | c2juiA_ |
| not modelled | 7.0 | 33 | PDB header:toxin Chain: A: PDB Molecule:plne; PDBTitle: three-dimensional structure of the two peptides that2 constitute the two-peptide bacteriocin plantaracin ef
38 | c3pf6C_ |
| not modelled | 6.8 | 29 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein pp-luz7_gp033; PDBTitle: the structure of uncharacterized protein pp-luz7_gp033 from2 pseudomonas phage luz7.
39 | d1y7ea2 |
| not modelled | 6.6 | 11 | Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases
40 | d1v6fa_ |
| not modelled | 6.4 | 9 | Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Cofilin-like
41 | d1nc7a_ |
| not modelled | 6.4 | 24 | Fold:Hypothetical protein TM1070 Superfamily:Hypothetical protein TM1070 Family:Hypothetical protein TM1070
42 | d1t1ea2 |
| not modelled | 6.1 | 20 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors
43 | d2bg1a1 |
| not modelled | 6.1 | 18 | Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase
44 | c3p8cE_ |
| not modelled | 5.9 | 19 | PDB header:protein binding Chain: E: PDB Molecule:probable protein brick1; PDBTitle: structure and control of the actin regulatory wave complex
45 | c2gljR_ |
| not modelled | 5.7 | 11 | PDB header:hydrolase Chain: R: PDB Molecule: PDBTitle: crystal structure of aminopeptidase i from clostridium2 acetobutylicum
46 | d1ce7b2 |
| not modelled | 5.5 | 31 | Fold:beta-Trefoil Superfamily:Ricin B-like lectins Family:Ricin B-like
47 | d2je8a2 |
| not modelled | 5.4 | 21 | Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain