HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/985276605896ab17/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/985276605896ab17/query.hhm DATE Wed Jan 18 06:06:15 2012 LENG 127 match states, 127 columns in multiple alignment FILT 26 out of 28 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.9 EVD 0.4302 0.7637 SEQ >ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHCCCC EEEEECCCCCCCHHHHHHHCCCCCCCC >ss_conf 9572013322135699999999999972332366824898414457655748999999986799732134408859999889578899999999864985 044320036675478986043611369 >Consensus xxxxrxxxrxxxWkxxlxlxvvsxlyalPxlyxxexavqIxaxxxGxxlpdxxxixqxLxxxGIxxksitxxxxslxIRfxsxExQlxAkdVLxxxLxxx yvVAlxnlxsxtpxWLxxlxxnpmklG >batch____ MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHG YIIAQQDNNSQAMQWLTRLRDNSHRFG >UniRef50_A3M8S5(1-123:633) Preprotein translocase IISP family, part of the channel n=21 Tax=Gammaproteobacteria RepID=A3M8S5_ACIBT E=1e-15 s/c=0.68 id=24% cov=94% -------MRYPAWKYllILVVLVVSTLYALPSLYPDEPAVQISGAKAGTQIDQSVvqKAEQILKTANIASHDNTFTNNAALLRVSSSEAQLKAKEVLRRD LGDQYVVAL-NLAPTTPEWLQKIGAKPMKLG >UniRef50_Q7MD23(31-151:628) Preprotein translocase subunit SecD n=87 Tax=Gammaproteobacteria RepID=Q7MD23_VIBVY E=2e-06 s/c=0.44 id=25% cov=54% ----------------------------------------------------------LEHQSVSVDKVTEKEGVTTLVFSDENAQSQARKILDNTLGDD ANISFSYV-SVAPQWLSDMGFNPIKLG >UniRef50_B5EK06(3-121:594) Protein-export membrane protein SecD n=3 Tax=Acidithiobacillus RepID=B5EK06_ACIF5 E=3e-24 s/c=0.94 id=26% cov=68% ------------WKYLIILVVVlpSLFYALPNFYGWHSAVEVRAP-AGTLLPPVATQQGWLQAAGIPVTRVSSGEKGSTFFFPNNDAQGLAETLLQNKLP ----------------------------- >UniRef50_A1SWT8(4-124:620) Protein-export membrane protein SecD n=86 Tax=Gammaproteobacteria RepID=A1SWT8_PSYIN E=1e-22 s/c=0.88 id=31% cov=31% ------------------------------------------------------------------KSAVLENDQLLIRLKSSEDQLLARETIIEKLEGD FVTA----------------------- >UniRef50_A1TW41(3-129:632) Protein-export membrane protein SecD n=34 Tax=Betaproteobacteria RepID=A1TW41_ACIAC E=1e-20 s/c=0.79 id=29% cov=49% ----------------------------------------------------------LQGAGITPDVVSLDGNSVRARFDTPDTQLKAKDVIQKALVPD aadpqYIVAL-NLVSRSPAWLTALH------- >UniRef50_A5EWX7(5-122:621) Preprotein translocase, SecD subunit n=2 Tax=Cardiobacteriaceae RepID=A5EWX7_DICNV E=6e-16 s/c=0.72 id=33% cov=35% ----------------------------------------------------------LSAEKIPYKNIVRSAENIDILFAQTDEQIEAKDVLAKHYPDA EI------------------------- >UniRef50_Q31FZ7(10-132:625) Protein-export membrane protein SecD n=7 Tax=Bacteria RepID=Q31FZ7_THICR E=7e-15 s/c=0.66 id=26% cov=31% ------------------------------------------------------------------KSMAYQNGQFLIRFHNTDEQMKARSALKEVMGRQ AVVA----------------------- >UniRef50_C5BH44(10-110:138) Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5BH44_EDWI9 E=7e-22 s/c=1.03 id=37% cov=76% --------RRQGWKrilGLLLFIVAALTVViLPQLGHKEVSLQIRATHNGLATPDGFFVYQKLDENGVSITSITQDREGLVIRLAHPEQRTLALQVLQRE LPPGYSIA----------------------- >UniRef50_A4SLM7(29-146:621) Protein-export membrane protein SecD n=2 Tax=Aeromonas RepID=A4SLM7_AERS4 E=7e-12 s/c=0.61 id=26% cov=36% -----------------------------------------------------------------------QKERVELVFSSQSEQQRAKQLLEQ---QG YDSAALTLEfySNAPTWISQL-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 Q 2 * * * * * * * * * * * * * 952 1050 * * * * * 2 0 * * * * * * 1496 0 0 I 3 * * * * * * * 992 * 1946 * * * * * * * 2074 * * 3 0 * * * * * * 2378 0 0 P 4 * * * 1946 * * * * * * * * 433 * * * * * * * 4 0 * * * * * * 2378 0 0 R 5 * * * * * * * * * * * * * * 0 * * * * * 5 407 * 2026 * * * * 2378 0 0 M 6 * * * * * 1700 * * * * 1446 * * * * * 1620 * * * 6 0 * * * * * 0 2043 0 1000 S 7 * * * * * * * * * * 1620 * * * * 1446 1700 * * * 7 0 * * * * * 0 2043 0 1000 L 8 * * * * * * * * * 1717 2129 * * * * * 2110 2086 * * 8 0 * * * * 0 * 2254 0 1000 R 9 2823 * * * * * * * * * * * * * 220 * * * * * 9 0 * * * * * * 2961 0 0 Q 10 * * * * 2962 * * * * 2941 2823 * * 2813 2740 * * * * 1698 10 0 * * * * * * 2961 0 0 L 11 * * * * * * * * * 883 * * 1698 2740 * * * * * * 11 0 * * * * * * 2961 0 0 A 12 1781 * * 2823 * 2740 * * * * * * 1952 * 2648 * * * * * 12 220 2823 * 1585 585 * * 2961 1000 0 W 13 * * * * * * * * * * * * * * * * * * 0 * 13 0 * * * * * * 3397 0 0 S 14 * * * * * * * * 546 2290 * * * * * 3174 * * * * 14 347 3137 3317 1585 585 * * 3397 1000 0 G 15 * * * * 3000 1952 * * * 2983 * * * * * * * * * 1029 15 185 3051 * 1000 1000 0 * 3312 1000 1000 A 16 3174 * * * 2220 3263 * 3148 * 2069 * * * * * * * 2190 * * 16 0 * * * * * * 3397 0 0 V 17 3271 * * * * 3400 * 3236 * 1008 * * * * * * * 2333 * * 17 0 * * * * * * 3472 0 0 L 18 2408 * * * * * * 1743 * 1684 * * * * * * * 2311 * * 18 0 * * * * * * 3472 0 0 L 19 * * * * 3251 * * 3417 * 732 3301 * * * * * * 3352 * * 19 154 3301 * 1000 1000 * * 3472 1000 0 L 20 3400 * * * 3286 * * 2261 * 1717 * * * * * * * 1786 * * 20 0 * * * * * * 3472 0 0 V 21 3417 * * * * * * 3271 * 3400 * * * * * * * 498 * * 21 0 * * * * * * 3472 0 0 G 22 3251 * * * * 3255 * 3271 * 2443 * * * * * * * 992 * * 22 338 2261 * 1000 1000 * * 3472 1590 0 T 23 1786 3301 * * * * * * * * * * * * * 1286 2333 * * * 23 0 * * * * * * 3472 0 0 L 24 * * * * * 3417 * * * 938 * * * * * 3301 3352 2435 * * 24 136 3471 * 1000 1000 * * 3472 1000 0 L 25 * * * * 3236 * * 3271 * 760 * * * * * 3400 3251 * * * 25 0 * * * * * * 3472 0 0 L 26 3417 * * * 3400 * * * * 3255 * * * * * * * 3251 * 733 26 0 * * * * * * 3472 0 0 A 27 320 * * * * * * * 3417 * * * * * * * * 3251 * * 27 322 3251 3400 0 * * * 3472 1000 0 W 28 3182 * * * * * * 3199 * 577 * * * * * * * * 3174 * 28 0 * * * * 0 * 3515 0 1000 S 29 * * * * * * * * * * * * 160 * * 3255 * * * * 29 0 * * * * * * 3472 0 0 A 30 1770 * * * * * * * * * * 989 * 3251 * 3352 * * * * 30 0 * * * * * * 3472 0 0 V 31 * * * * 3236 * * 3286 * 746 * * * * * * * 2359 * * 31 0 * * * * * * 3472 0 0 R 32 * * * * 3417 3251 * * * 3400 * * * * 3255 * * * * 733 32 0 * * * * * * 3472 0 0 Q 33 * * * * * 1726 3372 * * * * * 2403 2029 3573 3592 * * * * 33 0 * * * * * * 3588 0 0 Q 34 * * 2403 2321 * * 2582 * 2466 * * * * 3459 * * 3842 * 3291 * 34 0 * * * * * * 3588 0 0 E 35 3421 * 1603 1070 * * 3307 * * * * * * * * * * * * * 35 0 * * * * * * 3736 0 0 S 36 * * * * * * * * * * * * 1142 * * 1747 3935 2445 * * 36 0 * * * * * * 3736 0 0 T 37 1074 * * * * * * * * * 3199 * * * * 2699 2345 3935 * * 37 0 * * * * * * 3736 0 0 L 38 * * * * * * * 2388 * 1394 * * * * * * * 1223 * * 38 0 * * * * * * 3736 0 0 A 39 3838 * * 3307 * * 3199 * 3844 * * * * 620 * * * * * * 39 0 * * * * * * 3736 0 0 I 40 * * * * * * * 315 * 3397 * * * * * * * 3307 * * 40 0 * * * * * * 3736 0 0 R 41 * * * * * * * * * * * * * * 1191 1420 2410 * * * 41 0 * * * * * * 3736 0 0 A 42 799 * * * * 3509 3421 * * * * * 2486 * * * * 3935 * * 42 0 * * * * * * 3736 0 0 V 43 2706 * * * * * * * 3356 2295 * 3844 3307 * * 2121 3742 3838 * * 43 154 * 3307 * * * * 3736 0 0 H 44 * * * 3322 * * 1926 * 3436 * * 2524 * 3735 2041 * * * * 4254 44 123 * 3616 * * 0 * 3504 0 1000 Q 45 1730 * 2707 * * * * * * * * 3732 * 1727 * 2574 * * * * 45 0 * * * * 0 * 3673 0 1000 G 46 2423 * * * * 298 * * * * * * * * * * * * * * 46 0 * * * * * * 3768 0 0 T 47 2528 * * * * 3461 * * * 2890 4342 * 3393 * * * 1306 4265 * * 47 138 3454 * 0 * * * 3768 1000 0 T 48 3084 * * 3461 * * * 3393 * 3323 * * 4007 2634 * 1956 3121 * * * 48 0 * * * * * * 3768 0 0 M 49 * * * 2423 * * * 3549 * 993 3929 * * * * * 3853 3461 * * 49 0 * * * * * * 3768 0 0 P 50 3393 * 2634 * * * * * * * * * 832 3454 * 3461 * * * * 50 0 * * * * * * 3768 0 0 D 51 3461 * 896 * * * * * * * * * 3323 2501 * * * 3393 * * 51 0 * * * * * * 3768 0 0 G 52 3723 * * 3393 * 1115 * * * * * * * * * 3549 * 1826 * * 52 0 * * * * * * 3768 0 0 F 53 2390 * * 2423 1115 * * * * 3723 * * * * * * * 3549 * * 53 419 1989 * 1000 1000 * * 3768 1775 0 S 54 * * * * 3853 * * * 2469 * * * * 3454 2586 3929 3323 * * 1613 54 0 * * * * * * 3768 0 0 I 55 3549 * * * * * * 1231 * 2967 * * * 3323 * * * 1939 * * 55 0 * * * * * * 3768 0 0 W 56 * * 3723 2501 * * * * 3393 3461 * * * 3323 * * * * 3929 1336 56 0 * * * * * * 3768 0 0 H 57 2582 * * * * 3323 3929 * * * * * * 1054 * 2426 * * * * 57 0 * * * * * * 3768 0 0 H 58 2457 * 3723 * * * 2929 3549 3853 * * * * 4007 2767 * 2764 * 3323 * 58 0 * * * * * * 3768 0 0 L 59 * * * * * * * * * 98 * * * * * * * * 3931 * 59 0 * * * * * * 4329 0 0 D 60 * * 2642 3639 * * * * 2615 * * 2181 * 2167 * 2708 * * * * 60 0 * * * * * * 4329 0 0 A 61 1573 * * 2554 * 3409 3639 * * * * * * 3931 * 4197 2329 * * * 61 0 * * * * * * 4329 0 0 H 62 1593 * * 2897 * * 4480 * 4630 * * 3261 * 2174 3020 * * * * * 62 0 * * * * * * 4329 0 0 G 63 * * * * * 487 4360 * 4030 * * 3364 * * * 3657 * * * * 63 0 * * * * * * 4280 0 0 I 64 * * * * * * * 648 * 2358 * * * * * * * 2585 * * 64 0 * * * * * * 4280 0 0 P 65 1478 * * * * * 3440 * * * * * 2306 4528 4761 2487 3506 * * * 65 0 * * * * * * 4280 0 0 F 66 4657 * * * 4590 * 4291 1792 * * * * 3506 * * 3158 3505 2465 * 3186 66 0 * * * * * * 4280 0 0 K 67 * * 2449 * * 4323 4372 * 804 4458 * * * * * * 3317 * * * 67 0 * * * * * * 4461 0 0 S 68 2912 * 2909 * * 4772 * * 3896 * * 4251 * * 4214 1123 * 3949 * * 68 0 * * * * * * 4560 0 0 I 69 4616 * 4400 * * 4454 * 1115 * * 3526 4423 * * * * * 1883 * * 69 0 * * * * * * 4560 0 0 T 70 3456 * * 3527 4772 * * 4401 * * * * * * 4608 2892 1200 2975 * * 70 0 * * * * * * 4560 0 0 P 71 * * 4611 3896 4423 * * * * 2421 * * 1800 4406 2857 4214 * 3604 * 4316 71 0 * * * * * * 4560 0 0 K 72 * * 2433 1780 * 4294 * * 3435 * * * * 3423 * 3020 4478 3075 * * 72 0 * * * * * * 4652 0 0 N 73 4296 * 3752 3149 * 2219 * * 2951 * * 1704 * 3904 4499 * * * * * 73 0 * * * * * * 4652 0 0 D 74 * * 1804 2471 * 2817 * * 3390 * * 2235 * * * 3582 * * * * 74 0 * * * * * * 4652 0 0 T 75 3868 * * * * 2889 * * 4700 * * 3035 * 3526 4463 1407 3935 4026 * * 75 0 * * * * * * 4696 0 0 L 76 4616 * * * 4403 4497 * 2195 * 1314 * * * * * 4368 4026 2866 * * 76 0 * * * * * * 4696 0 0 L 77 4715 * 4313 4463 * * * 3382 4059 1693 4657 * * * 3997 * 3187 2404 * * 77 0 * * * * * * 4696 0 0 I 78 3490 * * * 4368 * * 1351 * 2761 * * * * * * * 1631 * * 78 57 4700 * 0 * * * 4696 1000 0 T 79 * * * * 4368 * 5175 * * 4313 * * * * 617 4430 3872 3228 * * 79 0 * * * * * * 4696 0 0 F 80 * * * * 792 * * * * 1549 4653 * * * * * * 4616 * * 80 0 * * * * * * 4696 0 0 D 81 3006 * 3424 3754 * 5180 4403 * 3184 * * 4653 2672 4700 * 2241 4949 4497 * * 81 0 * * * * * * 4696 0 0 S 82 * * 2284 * 4430 * 4562 * 4497 * * 2447 * 4313 * 1476 3865 * * * 82 0 * * * * * * 4696 0 0 S 83 * * * 3489 * * * * * 4657 * 3525 2014 3480 * 3178 1744 4715 * * 83 0 * * * * * * 4696 0 0 D 84 * * 1664 894 * * * * * * * 4026 * 4657 * 4463 * * * * 84 0 * * * * * * 4696 0 0 Q 85 2121 * 2724 2188 * * * * * * * * * 1854 * * 3027 * * * 85 0 * * * * * * 4696 0 0 S 86 * * * * * 4891 * * * * * * * 377 4562 2698 * * * * 86 0 * * * * * * 4696 0 0 A 87 5049 4879 * * * 3152 * 3605 * 1124 3416 * * 4463 * 4026 3609 * * * 87 0 * * * * * * 4696 0 0 A 88 2413 * * 4313 * * * * 1998 2620 * * 4497 2773 2659 * * * * * 88 0 * * * * * * 4696 0 0 A 89 49 * * * * * * * * * * * * * * * * 4894 * * 89 0 * * * * * * 4696 0 0 K 90 * * * 3601 * * * 4430 1073 4562 * 4657 * 3302 2235 * * * * * 90 0 * * * * * * 4696 0 0 A 91 5049 * 1507 1870 * * * * 2975 * * * * 3512 4879 4403 4368 * * * 91 0 * * * * * * 4696 0 0 V 92 3740 * * * * * * 2296 4949 2973 * * * * * * 4661 937 * * 92 0 * * * * * * 4696 0 0 L 93 3676 * * * * * * 2350 * 553 * * * * * * * 4497 * * 93 0 * * * * * * 4696 0 0 D 94 3030 * 3449 3685 * * * 4661 3551 * * 4700 * 1929 2196 5042 4891 * * * 94 0 * * * * * * 4696 0 0 R 95 4829 * 3565 2707 * * * 5042 2482 4971 * 2814 * 3557 2432 4653 4891 * * * 95 67 * 4463 * * * * 4696 0 0 T 96 3476 * 4449 4433 * * 4299 4663 3466 3950 * * * 4555 4931 3240 2168 2565 * * 96 0 * * * * * 0 4570 0 1000 L 97 * * * * 4776 * * * * 279 4348 * * * * * * 4658 * 4299 97 102 3871 * 2322 322 * 0 4570 1453 1000 P 98 * * * 4652 * 1317 * * * * * 3281 1370 * * 4686 * 5044 * * 98 0 * * * * 0 * 4570 0 1000 H 99 4391 * 1775 3739 * 4592 4977 * 4947 * * 3321 3261 2694 4341 4832 4786 * * * 99 0 * * * * * * 4570 0 0 G 100 3523 * 1737 * * 1882 * * * * * 2790 * 3435 * 4612 4991 4947 * * 100 99 3919 * 2322 322 * * 4570 1298 0 Y 101 3094 * * 4260 3217 * * 4845 * * * * * * * * 4947 4991 * 679 101 0 * * * * * * 4570 0 0 I 102 4391 * 3566 * * * * 1811 * * * 3883 * * * 3636 3742 1474 * * 102 0 * * * * * * 4570 0 0 I 103 * * * * * * * 1503 * * * * * * * 4336 2728 1163 * * 103 0 * * * * * * 4444 0 0 A 104 185 * * * * * * * * * * * * * * 3824 * 4329 * * 104 0 * * * * * * 4444 0 0 Q 105 2391 * * * 3724 * 4120 * * 1132 4277 * * 2570 * * * * * * 105 1023 * 978 * * * * 4184 0 0 Q 106 * * * * * 3197 * * * 2773 * * * 1766 2502 1867 * * * * 106 0 * * * * 0 * 3277 0 2963 D 107 3907 * 4182 3639 * * 3883 * * * * 960 3885 * * * 3853 * * 3659 107 0 * * * * * * 4203 0 0 N 108 * * * * * 3885 * * * 907 4317 4182 * 3883 * 3639 3907 3659 * * 108 119 * 3659 * * * * 4203 0 0 N 109 1288 * * 3685 * * * * 3463 2889 * 4002 * 3119 * * 3797 4735 * * 109 266 3685 3463 1000 1000 0 * 4008 1000 1000 S 110 3632 * * * * 3774 * * * * * * 1935 4145 * 921 * * * * 110 0 * * * * 0 * 4020 0 1000 Q 111 2315 * 4671 * * * * * 3639 * * 3067 * 3025 3150 * 2026 3659 * * 111 0 * * * * * * 4203 0 0 A 112 2297 * * * * * * * * * * * 3907 3883 3639 2314 1580 4433 * * 112 101 * 3885 * * * * 4203 0 0 M 113 * * * * 3752 * 3558 * * * 4017 3681 512 * * * * * * * 113 111 * 3752 * * 0 * 4104 0 1000 Q 114 3531 * 3347 2799 * * * * * * * 4251 * 1940 2532 3713 3196 * * * 114 0 * * * * 0 * 4079 0 1000 W 115 * * 3883 * * * * * * 3639 * * * * * * * * 231 * 115 0 * * * * * * 4203 0 0 L 116 3883 * * * * * * 2869 * 537 4671 * * 3907 * * * * * * 116 0 * * * * * * 4203 0 0 T 117 3440 * * * * * * * * * * 2882 3605 2670 4194 1699 2554 * * * 117 0 * * * * * * 4184 0 0 R 118 2242 * 3556 * * * 3873 * 1944 * 4297 * * 3854 3025 4306 * 3605 * * 118 0 * * * * * * 4184 0 0 L 119 * * * * 2786 * * 2194 * 872 3470 * * * * * * * * * 119 0 * * * * * * 4093 0 0 R 120 * * * * * 999 3312 * 3831 * * * * * 2094 * 3405 * * * 120 0 * * * * * * 3787 0 0 D 121 1328 * 3295 * 3055 2612 * * * * * * * 3305 * 3124 * * * * 121 0 * * * * * * 3521 0 0 N 122 * * * * * * * * 1578 * * 775 * * * 3634 * * * * 122 0 * * * * * * 3521 0 0 S 123 * * * * * * * * * * * * 552 2212 * 3295 * * * * 123 0 * * * * * * 3521 0 0 H 124 * * * * * * 3295 3055 * * 832 * * 3124 * 3305 * * * * 124 0 * * * * * * 3521 0 0 R 125 * * * * 3525 * * * 882 * * 2404 * * 2463 * * * * * 125 0 * * * * * * 3521 0 0 F 126 * * * * 3295 * * * * 301 * * * * * * * * 3532 * 126 0 * * * * * * 3521 0 0 G 127 * * * * * 0 * * * * * * * * * * * * * * 127 0 * * 0 * * * 3521 0 0 //