BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (127 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P42615 Uncharacterized protein yqjB n=104 Tax=Enterobac... 259 2e-68 UniRef50_D2T3K1 Protein-export membrane protein secD n=3 Tax=Erw... 81 1e-14 UniRef50_C8QD25 Putative outer membrane protein, YqjB n=1 Tax=Pa... 80 3e-14 UniRef50_A4THL5 Membrane protein n=34 Tax=Enterobacteriaceae Rep... 75 8e-13 UniRef50_C6CKG0 Putative uncharacterized protein n=1 Tax=Dickeya... 74 1e-12 UniRef50_D2BRP0 Putative uncharacterized protein n=1 Tax=Dickeya... 74 1e-12 UniRef50_C6DKE3 Putative uncharacterized protein n=6 Tax=Enterob... 63 3e-09 UniRef50_C5BH44 Putative uncharacterized protein n=2 Tax=Edwards... 62 6e-09 >UniRef50_P42615 Uncharacterized protein yqjB n=104 Tax=Enterobacteriaceae RepID=YQJB_ECOLI Length = 127 Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 127/127 (100%), Positives = 127/127 (100%) Query: 1 MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLD 60 MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLD Sbjct: 1 MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLD 60 Query: 61 AHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLR 120 AHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLR Sbjct: 61 AHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLR 120 Query: 121 DNSHRFG 127 DNSHRFG Sbjct: 121 DNSHRFG 127 >UniRef50_D2T3K1 Protein-export membrane protein secD n=3 Tax=Erwinia RepID=D2T3K1_ERWPY Length = 130 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 2/111 (1%) Query: 9 RQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKS 68 R L W V ++ T L A+ + +STL IRA QG ++PDGF ++ L GI KS Sbjct: 14 RFLPWL-VVAIVALTGLAKIPALFRHDSTLQIRASRQGVSLPDGFYVYQTLSTQGIHIKS 72 Query: 69 ITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRL 119 ITP+ D+L+I FDS +QS AA+ VL P G+ IA Q A W+ + Sbjct: 73 ITPEQDSLVIRFDSPEQSCAAERVLRELFPQGFDIAHQPGQG-ATSWINHI 122 >UniRef50_C8QD25 Putative outer membrane protein, YqjB n=1 Tax=Pantoea sp. At-9b RepID=C8QD25_9ENTR Length = 122 Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 12/121 (9%) Query: 2 QIPRMSLRQLAWSGAVLLLVGTL-LLAWS---AVRQQESTLAIRAVHQGTTMPDGFSIWH 57 +IPR R L W LL G L L+A S A+ E+ + IR + GT +PDGF ++ Sbjct: 6 RIPR---RLLPW-----LLGGALALVAVSFAPALLSHETVVQIRVANSGTPLPDGFYLYQ 57 Query: 58 HLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLT 117 L A G+ KSITP D L+I F++ +QS AA+ VL R LP G+++A SQ Q Sbjct: 58 QLSAQGVRIKSITPSGDALVIHFENEEQSLAAQKVLRRLLPQGFVVAAGHQASQQNQDAN 117 Query: 118 R 118 R Sbjct: 118 R 118 >UniRef50_A4THL5 Membrane protein n=34 Tax=Enterobacteriaceae RepID=A4THL5_YERPP Length = 129 Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 1/97 (1%) Query: 31 VRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAK 90 + Q ESTL IR QG ++PDGF ++ HL+ GI KSI P+ND+L+++ + +Q A Sbjct: 34 IVQTESTLKIRPNQQGLSLPDGFYLYQHLNGRGIHIKSIIPENDSLVVSLEFPEQQMQAI 93 Query: 91 AVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG 127 VL LP GY I ++ + + L R N G Sbjct: 94 EVLQDVLPAGYAIVASESKKRH-RLLPVFRSNQQNLG 129 >UniRef50_C6CKG0 Putative uncharacterized protein n=1 Tax=Dickeya zeae Ech1591 RepID=C6CKG0_DICZE Length = 113 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 47/72 (65%) Query: 35 ESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLD 94 E L I +HQG ++PDGF I+ L+ GI KSITP+ND++++ S +Q AAK +L Sbjct: 32 EVMLHITPLHQGASLPDGFYIYQRLNERGIAIKSITPENDSIIVRLSSPEQGGAAKEILT 91 Query: 95 RTLPHGYIIAQQ 106 LP+ +IAQ+ Sbjct: 92 TVLPNAIVIAQR 103 >UniRef50_D2BRP0 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech586 RepID=D2BRP0_DICD5 Length = 117 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 48/72 (66%) Query: 35 ESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLD 94 E L I +HQG T+PDGF I+ L+ GI KSITP+N+++++ S +QS AAK +L Sbjct: 36 EVMLHITPLHQGMTLPDGFYIYQRLNERGIAIKSITPENNSIIVRLSSPEQSGAAKEILS 95 Query: 95 RTLPHGYIIAQQ 106 LP+ +IAQ+ Sbjct: 96 IALPNTVVIAQR 107 >UniRef50_C6DKE3 Putative uncharacterized protein n=6 Tax=Enterobacteriaceae RepID=C6DKE3_PECCP Length = 131 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 33 QQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAV 92 Q ++ L I+ + G +PDGF ++ L+ GI KSITP+ D+L++ S +QS AA+ V Sbjct: 39 QDDAMLHIKP-YDGAALPDGFYVYQRLNEKGIAIKSITPEQDSLIVRLASPEQSIAARDV 97 Query: 93 LDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG 127 L +LP I AQQ W +L + G Sbjct: 98 LRLSLPKVTITAQQATTPTPF-WQQKLTQKQSKLG 131 >UniRef50_C5BH44 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5BH44_EDWI9 Length = 138 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 9 RQLAWS---GAVLLLVGTL-LLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGI 64 R+ W G +L +V L ++ + +E +L IRA H G PDGF ++ LD +G+ Sbjct: 11 RRQGWKRILGLLLFIVAALTVVILPQLGHKEVSLQIRATHNGLATPDGFFVYQKLDENGV 70 Query: 65 PFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQ 106 SIT + L+I +Q A VL R LP GY IA + Sbjct: 71 SITSITQDREGLVIRLAHPEQRTLALQVLQRELPPGYSIADK 112 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P42615 Uncharacterized protein yqjB n=104 Tax=Enterobac... 181 6e-45 UniRef50_D2T3K1 Protein-export membrane protein secD n=3 Tax=Erw... 145 3e-34 UniRef50_A4THL5 Membrane protein n=34 Tax=Enterobacteriaceae Rep... 130 1e-29 UniRef50_C8QD25 Putative outer membrane protein, YqjB n=1 Tax=Pa... 127 1e-28 UniRef50_C5BH44 Putative uncharacterized protein n=2 Tax=Edwards... 122 2e-27 UniRef50_C6DKE3 Putative uncharacterized protein n=6 Tax=Enterob... 118 7e-26 UniRef50_C6CKG0 Putative uncharacterized protein n=1 Tax=Dickeya... 113 2e-24 UniRef50_D2BRP0 Putative uncharacterized protein n=1 Tax=Dickeya... 112 3e-24 Sequences not found previously or not previously below threshold: UniRef50_Q4UVX0 Protein-export membrane protein n=20 Tax=Xanthom... 54 1e-06 UniRef50_B6IZX0 Protein translocase subunit n=9 Tax=Legionellale... 50 2e-05 UniRef50_A3M8S5 Preprotein translocase IISP family, part of the ... 45 5e-04 UniRef50_A4IYF2 Protein-export membrane protein SecD n=19 Tax=Fr... 44 0.001 UniRef50_Q9HXI1 Protein-export membrane protein secD n=39 Tax=Ba... 42 0.008 UniRef50_A1SWT8 Protein-export membrane protein SecD n=86 Tax=Ga... 42 0.008 >UniRef50_P42615 Uncharacterized protein yqjB n=104 Tax=Enterobacteriaceae RepID=YQJB_ECOLI Length = 127 Score = 181 bits (459), Expect = 6e-45, Method: Composition-based stats. Identities = 127/127 (100%), Positives = 127/127 (100%) Query: 1 MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLD 60 MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLD Sbjct: 1 MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLD 60 Query: 61 AHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLR 120 AHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLR Sbjct: 61 AHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLR 120 Query: 121 DNSHRFG 127 DNSHRFG Sbjct: 121 DNSHRFG 127 >UniRef50_D2T3K1 Protein-export membrane protein secD n=3 Tax=Erwinia RepID=D2T3K1_ERWPY Length = 130 Score = 145 bits (366), Expect = 3e-34, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 9 RQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKS 68 R L W V ++ T L A+ + +STL IRA QG ++PDGF ++ L GI KS Sbjct: 14 RFLPWL-VVAIVALTGLAKIPALFRHDSTLQIRASRQGVSLPDGFYVYQTLSTQGIHIKS 72 Query: 69 ITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG 127 ITP+ D+L+I FDS +QS AA+ VL P G+ IA Q A W+ + G Sbjct: 73 ITPEQDSLVIRFDSPEQSCAAERVLRELFPQGFDIAHQPGQG-ATSWINHISLLPQSVG 130 >UniRef50_A4THL5 Membrane protein n=34 Tax=Enterobacteriaceae RepID=A4THL5_YERPP Length = 129 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 29 SAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAA 88 + Q ESTL IR QG ++PDGF ++ HL+ GI KSI P+ND+L+++ + +Q Sbjct: 32 PMIVQTESTLKIRPNQQGLSLPDGFYLYQHLNGRGIHIKSIIPENDSLVVSLEFPEQQMQ 91 Query: 89 AKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG 127 A VL LP GY I ++ + + L R N G Sbjct: 92 AIEVLQDVLPAGYAIVASESKKRH-RLLPVFRSNQQNLG 129 >UniRef50_C8QD25 Putative outer membrane protein, YqjB n=1 Tax=Pantoea sp. At-9b RepID=C8QD25_9ENTR Length = 122 Score = 127 bits (318), Expect = 1e-28, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 4/117 (3%) Query: 2 QIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDA 61 +IPR R L W L + + A A+ E+ + IR + GT +PDGF ++ L A Sbjct: 6 RIPR---RLLPWLLGGALALVAVSFA-PALLSHETVVQIRVANSGTPLPDGFYLYQQLSA 61 Query: 62 HGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTR 118 G+ KSITP D L+I F++ +QS AA+ VL R LP G+++A SQ Q R Sbjct: 62 QGVRIKSITPSGDALVIHFENEEQSLAAQKVLRRLLPQGFVVAAGHQASQQNQDANR 118 >UniRef50_C5BH44 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5BH44_EDWI9 Length = 138 Score = 122 bits (307), Expect = 2e-27, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 9 RQLAWS---GAVLLLVGTL-LLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGI 64 R+ W G +L +V L ++ + +E +L IRA H G PDGF ++ LD +G+ Sbjct: 11 RRQGWKRILGLLLFIVAALTVVILPQLGHKEVSLQIRATHNGLATPDGFFVYQKLDENGV 70 Query: 65 PFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQ 106 SIT + L+I +Q A VL R LP GY IA + Sbjct: 71 SITSITQDREGLVIRLAHPEQRTLALQVLQRELPPGYSIADK 112 >UniRef50_C6DKE3 Putative uncharacterized protein n=6 Tax=Enterobacteriaceae RepID=C6DKE3_PECCP Length = 131 Score = 118 bits (295), Expect = 7e-26, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 33 QQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAV 92 Q ++ L I+ + G +PDGF ++ L+ GI KSITP+ D+L++ S +QS AA+ V Sbjct: 39 QDDAMLHIKP-YDGAALPDGFYVYQRLNEKGIAIKSITPEQDSLIVRLASPEQSIAARDV 97 Query: 93 LDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG 127 L +LP I AQQ W +L + G Sbjct: 98 LRLSLPKVTITAQQATTPTPF-WQQKLTQKQSKLG 131 >UniRef50_C6CKG0 Putative uncharacterized protein n=1 Tax=Dickeya zeae Ech1591 RepID=C6CKG0_DICZE Length = 113 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 50/84 (59%) Query: 29 SAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAA 88 S E L I +HQG ++PDGF I+ L+ GI KSITP+ND++++ S +Q A Sbjct: 26 SQRLPDEVMLHITPLHQGASLPDGFYIYQRLNERGIAIKSITPENDSIIVRLSSPEQGGA 85 Query: 89 AKAVLDRTLPHGYIIAQQDNNSQA 112 AK +L LP+ +IAQ+ + + Sbjct: 86 AKEILTTVLPNAIVIAQRIHGATP 109 >UniRef50_D2BRP0 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech586 RepID=D2BRP0_DICD5 Length = 117 Score = 112 bits (280), Expect = 3e-24, Method: Composition-based stats. Identities = 33/73 (45%), Positives = 48/73 (65%) Query: 34 QESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVL 93 E L I +HQG T+PDGF I+ L+ GI KSITP+N+++++ S +QS AAK +L Sbjct: 35 DEVMLHITPLHQGMTLPDGFYIYQRLNERGIAIKSITPENNSIIVRLSSPEQSGAAKEIL 94 Query: 94 DRTLPHGYIIAQQ 106 LP+ +IAQ+ Sbjct: 95 SIALPNTVVIAQR 107 >UniRef50_Q4UVX0 Protein-export membrane protein n=20 Tax=Xanthomonadaceae RepID=Q4UVX0_XANC8 Length = 622 Score = 54.0 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 3 IPRMSLRQLA---WSGAVLLLVGTL--LLAWSAVRQQESTLAIRAVHQGTTMPDGFS--I 55 +PR ++ L W ++L+V + L A V Q++ ++ I A G + D I Sbjct: 2 VPRGTVAMLEFPRWKYFLILVVLAVSALYALPNVYQKDPSVQITASR-GAQLDDALRSRI 60 Query: 56 WHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQW 115 L + GI K++T + D+L++ + A VL + L Y +A ++ W Sbjct: 61 DADLKSAGITPKAVTREGDSLMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVP-DW 119 Query: 116 LTRLRDNSHRFG 127 L +L G Sbjct: 120 LAKLGGRPMVLG 131 >UniRef50_B6IZX0 Protein translocase subunit n=9 Tax=Legionellales RepID=B6IZX0_COXB2 Length = 622 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 9 RQLAWSGAVL--LLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPF 66 R W +L L++ +L+ A + ++ + I A + I L+A I + Sbjct: 3 RYPLWRYILLAVLIIISLIYALPNLYGEDPAIQISAKNSAPIEAVEEKIKSTLNAQHISY 62 Query: 67 KSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRF 126 S+ P ++T+L+ F S++ A+ V+ + Y +A + + +WL + R Sbjct: 63 LSVRPVDNTVLVRFPSTEDQLKAQDVIQAVVGTDYSVAL-NLAPRTPRWLQAIGAKPMRL 121 Query: 127 G 127 G Sbjct: 122 G 122 >UniRef50_A3M8S5 Preprotein translocase IISP family, part of the channel n=21 Tax=Gammaproteobacteria RepID=A3M8S5_ACIBT Length = 633 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 5/124 (4%) Query: 8 LRQLAWS--GAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFS--IWHHLDAHG 63 +R AW +++LV + L A ++ E + I GT + L Sbjct: 1 MRYPAWKYLLILVVLVVSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTAN 60 Query: 64 IPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNS 123 I T N+ L+ SS+ AK VL R L Y++A + +WL ++ Sbjct: 61 IASHDNTFTNNAALLRVSSSEAQLKAKEVLRRDLGDQYVVAL-NLAPTTPEWLQKIGAKP 119 Query: 124 HRFG 127 + G Sbjct: 120 MKLG 123 >UniRef50_A4IYF2 Protein-export membrane protein SecD n=19 Tax=Francisella RepID=A4IYF2_FRATW Length = 645 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 5/119 (4%) Query: 13 WSGAVLLLVGTLLL--AWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKS-- 68 W +++++ L + A V + L I T S+ + L I ++ Sbjct: 15 WKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVENTLAKDKISYQKAD 74 Query: 69 ITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG 127 I + ITF ++ AK VL +L YIIA ++ WL+ L N G Sbjct: 75 IADDKSNIAITFKDVEEQLKAKKVLKDSLSDDYIIAMNMLSNSPN-WLSALGANPMNLG 132 >UniRef50_Q9HXI1 Protein-export membrane protein secD n=39 Tax=Bacteria RepID=SECD_PSEAE Length = 620 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 5/119 (4%) Query: 13 WSGAVLLLVGTL--LLAWSAVRQQESTLAIRAVHQGT--TMPDGFSIWHHLDAHGIPFKS 68 W ++L V + + + + + + I T D L GI K+ Sbjct: 8 WKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTDAGIAVKA 67 Query: 69 ITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG 127 + LI D AK V+ RTL Y++A + +WL +L + + G Sbjct: 68 DSLSKKGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTP-EWLRKLGGSPMKLG 125 >UniRef50_A1SWT8 Protein-export membrane protein SecD n=86 Tax=Gammaproteobacteria RepID=A1SWT8_PSYIN Length = 620 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 10/121 (8%) Query: 13 WSGAVLLLVG--TLLLAWSAVRQQESTLAIRAVHQG----TTMPDGFSIWHHLDAHGIPF 66 W +LL + +LL A + ++ + I A +T+ D + L I Sbjct: 8 WKYLLLLFIVFISLLYAAPNLYGEDPAVQISATRGAKVELSTLGD---VQDILKQSNIIP 64 Query: 67 KSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRF 126 KS +ND LLI SS+ A+ + L ++ A S WL + + Sbjct: 65 KSAVLENDQLLIRLKSSEDQLLARETIIEKLEGDFVTALNLAPSTP-AWLEAIGAGPLKL 123 Query: 127 G 127 G Sbjct: 124 G 124 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P42615 Uncharacterized protein yqjB n=104 Tax=Enterobac... 156 2e-37 UniRef50_B6IZX0 Protein translocase subunit n=9 Tax=Legionellale... 140 1e-32 UniRef50_D2T3K1 Protein-export membrane protein secD n=3 Tax=Erw... 135 5e-31 UniRef50_Q4UVX0 Protein-export membrane protein n=20 Tax=Xanthom... 131 6e-30 UniRef50_A3M8S5 Preprotein translocase IISP family, part of the ... 129 4e-29 UniRef50_A4IYF2 Protein-export membrane protein SecD n=19 Tax=Fr... 127 1e-28 UniRef50_C8QD25 Putative outer membrane protein, YqjB n=1 Tax=Pa... 119 3e-26 UniRef50_A4THL5 Membrane protein n=34 Tax=Enterobacteriaceae Rep... 116 2e-25 UniRef50_C5BH44 Putative uncharacterized protein n=2 Tax=Edwards... 110 9e-24 UniRef50_C6CKG0 Putative uncharacterized protein n=1 Tax=Dickeya... 105 4e-22 UniRef50_C6DKE3 Putative uncharacterized protein n=6 Tax=Enterob... 104 8e-22 UniRef50_D2BRP0 Putative uncharacterized protein n=1 Tax=Dickeya... 102 4e-21 Sequences not found previously or not previously below threshold: UniRef50_Q9HXI1 Protein-export membrane protein secD n=39 Tax=Ba... 101 6e-21 UniRef50_C6SDL0 Protein-export membrane protein SecD n=1 Tax=Nei... 101 8e-21 UniRef50_A1SWT8 Protein-export membrane protein SecD n=86 Tax=Ga... 98 6e-20 UniRef50_P44591 Protein-export membrane protein secD n=216 Tax=G... 98 7e-20 UniRef50_Q0VS97 Preprotein translocase SecD subunit n=3 Tax=Gamm... 96 3e-19 UniRef50_C7RB47 Protein-export membrane protein SecD n=2 Tax=Pro... 93 3e-18 UniRef50_B8GTQ2 Preprotein translocase subunit SecD n=50 Tax=Bac... 90 2e-17 UniRef50_Q21RN8 Protein-export membrane protein SecD n=9 Tax=Bet... 89 4e-17 UniRef50_A1TW41 Protein-export membrane protein SecD n=34 Tax=Be... 88 1e-16 UniRef50_Q145I2 SecD export membrane protein n=111 Tax=cellular ... 81 1e-14 UniRef50_Q31FZ7 Protein-export membrane protein SecD n=7 Tax=Bac... 80 2e-14 UniRef50_B5EK06 Protein-export membrane protein SecD n=3 Tax=Aci... 71 1e-11 UniRef50_A5EWX7 Preprotein translocase, SecD subunit n=2 Tax=Car... 70 2e-11 UniRef50_Q7MD23 Preprotein translocase subunit SecD n=87 Tax=Gam... 67 2e-10 UniRef50_UPI000169A046 preprotein translocase subunit SecD n=1 T... 59 4e-08 UniRef50_Q7VQA9 Protein-export membrane protein SecD n=1 Tax=Can... 51 1e-05 UniRef50_A4SLM7 Protein-export membrane protein SecD n=2 Tax=Aer... 49 4e-05 >UniRef50_P42615 Uncharacterized protein yqjB n=104 Tax=Enterobacteriaceae RepID=YQJB_ECOLI Length = 127 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 127/127 (100%), Positives = 127/127 (100%) Query: 1 MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLD 60 MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLD Sbjct: 1 MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLD 60 Query: 61 AHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLR 120 AHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLR Sbjct: 61 AHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLR 120 Query: 121 DNSHRFG 127 DNSHRFG Sbjct: 121 DNSHRFG 127 >UniRef50_B6IZX0 Protein translocase subunit n=9 Tax=Legionellales RepID=B6IZX0_COXB2 Length = 622 Score = 140 bits (352), Expect = 1e-32, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 9 RQLAWSGAVL--LLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPF 66 R W +L L++ +L+ A + ++ + I A + I L+A I + Sbjct: 3 RYPLWRYILLAVLIIISLIYALPNLYGEDPAIQISAKNSAPIEAVEEKIKSTLNAQHISY 62 Query: 67 KSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRF 126 S+ P ++T+L+ F S++ A+ V+ + Y +A + +WL + R Sbjct: 63 LSVRPVDNTVLVRFPSTEDQLKAQDVIQAVVGTDYSVALN-LAPRTPRWLQAIGAKPMRL 121 Query: 127 G 127 G Sbjct: 122 G 122 >UniRef50_D2T3K1 Protein-export membrane protein secD n=3 Tax=Erwinia RepID=D2T3K1_ERWPY Length = 130 Score = 135 bits (339), Expect = 5e-31, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 9 RQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKS 68 R L W V ++ T L A+ + +STL IRA QG ++PDGF ++ L GI KS Sbjct: 14 RFLPW-LVVAIVALTGLAKIPALFRHDSTLQIRASRQGVSLPDGFYVYQTLSTQGIHIKS 72 Query: 69 ITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG 127 ITP+ D+L+I FDS +QS AA+ VL P G+ IA Q A W+ + G Sbjct: 73 ITPEQDSLVIRFDSPEQSCAAERVLRELFPQGFDIAHQPGQG-ATSWINHISLLPQSVG 130 >UniRef50_Q4UVX0 Protein-export membrane protein n=20 Tax=Xanthomonadaceae RepID=Q4UVX0_XANC8 Length = 622 Score = 131 bits (330), Expect = 6e-30, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%) Query: 3 IPRMSLRQLA---WSGAVLLLVGTL--LLAWSAVRQQESTLAIRAVHQGTTMPDGFS--I 55 +PR ++ L W ++L+V + L A V Q++ ++ I A G + D I Sbjct: 2 VPRGTVAMLEFPRWKYFLILVVLAVSALYALPNVYQKDPSVQITASR-GAQLDDALRSRI 60 Query: 56 WHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQW 115 L + GI K++T + D+L++ + A VL + L Y +A S W Sbjct: 61 DADLKSAGITPKAVTREGDSLMVRLPTLQAQTRANDVLRQQLGENYTVALN-LASTVPDW 119 Query: 116 LTRLRDNSHRFG 127 L +L G Sbjct: 120 LAKLGGRPMVLG 131 >UniRef50_A3M8S5 Preprotein translocase IISP family, part of the channel n=21 Tax=Gammaproteobacteria RepID=A3M8S5_ACIBT Length = 633 Score = 129 bits (323), Expect = 4e-29, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 5/124 (4%) Query: 8 LRQLAWSGAVLLLVG--TLLLAWSAVRQQESTLAIRAVHQGTTMPDGF--SIWHHLDAHG 63 +R AW ++L+V + L A ++ E + I GT + L Sbjct: 1 MRYPAWKYLLILVVLVVSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTAN 60 Query: 64 IPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNS 123 I T N+ L+ SS+ AK VL R L Y++A +WL ++ Sbjct: 61 IASHDNTFTNNAALLRVSSSEAQLKAKEVLRRDLGDQYVVALN-LAPTTPEWLQKIGAKP 119 Query: 124 HRFG 127 + G Sbjct: 120 MKLG 123 >UniRef50_A4IYF2 Protein-export membrane protein SecD n=19 Tax=Francisella RepID=A4IYF2_FRATW Length = 645 Score = 127 bits (318), Expect = 1e-28, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 RQLAWSGAVLLLVGTLL--LAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPF 66 + W +++++ L A V + L I T S+ + L I + Sbjct: 11 QFPLWKNLLIVIILALAIFYALPNVFGKSPALQISQKDGDVTTQLLVSVENTLAKDKISY 70 Query: 67 K--SITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSH 124 + I + ITF ++ AK VL +L YIIA ++ WL+ L N Sbjct: 71 QKADIADDKSNIAITFKDVEEQLKAKKVLKDSLSDDYIIAMNMLSNSPN-WLSALGANPM 129 Query: 125 RFG 127 G Sbjct: 130 NLG 132 >UniRef50_C8QD25 Putative outer membrane protein, YqjB n=1 Tax=Pantoea sp. At-9b RepID=C8QD25_9ENTR Length = 122 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 4/117 (3%) Query: 2 QIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDA 61 +IPR R L W L + + A A+ E+ + IR + GT +PDGF ++ L A Sbjct: 6 RIPR---RLLPWLLGGALALVAVSFA-PALLSHETVVQIRVANSGTPLPDGFYLYQQLSA 61 Query: 62 HGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTR 118 G+ KSITP D L+I F++ +QS AA+ VL R LP G+++A SQ Q R Sbjct: 62 QGVRIKSITPSGDALVIHFENEEQSLAAQKVLRRLLPQGFVVAAGHQASQQNQDANR 118 >UniRef50_A4THL5 Membrane protein n=34 Tax=Enterobacteriaceae RepID=A4THL5_YERPP Length = 129 Score = 116 bits (290), Expect = 2e-25, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 4/126 (3%) Query: 5 RMSLRQLAWSGAVLLLVGTLLLAW---SAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDA 61 R + W VL +V LL + Q ESTL IR QG ++PDGF ++ HL+ Sbjct: 5 RGRFGRPLWHYLVLPVVLLLLAVILLTPMIVQTESTLKIRPNQQGLSLPDGFYLYQHLNG 64 Query: 62 HGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRD 121 GI KSI P+ND+L+++ + +Q A VL LP GY I ++ + + L R Sbjct: 65 RGIHIKSIIPENDSLVVSLEFPEQQMQAIEVLQDVLPAGYAIVASESKKRH-RLLPVFRS 123 Query: 122 NSHRFG 127 N G Sbjct: 124 NQQNLG 129 >UniRef50_C5BH44 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5BH44_EDWI9 Length = 138 Score = 110 bits (276), Expect = 9e-24, Method: Composition-based stats. Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 4/104 (3%) Query: 9 RQLAWS---GAVLLLVGTL-LLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGI 64 R+ W G +L +V L ++ + +E +L IRA H G PDGF ++ LD +G+ Sbjct: 11 RRQGWKRILGLLLFIVAALTVVILPQLGHKEVSLQIRATHNGLATPDGFFVYQKLDENGV 70 Query: 65 PFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDN 108 SIT + L+I +Q A VL R LP GY IA + Sbjct: 71 SITSITQDREGLVIRLAHPEQRTLALQVLQRELPPGYSIADKIL 114 >UniRef50_C6CKG0 Putative uncharacterized protein n=1 Tax=Dickeya zeae Ech1591 RepID=C6CKG0_DICZE Length = 113 Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 50/84 (59%) Query: 29 SAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAA 88 S E L I +HQG ++PDGF I+ L+ GI KSITP+ND++++ S +Q A Sbjct: 26 SQRLPDEVMLHITPLHQGASLPDGFYIYQRLNERGIAIKSITPENDSIIVRLSSPEQGGA 85 Query: 89 AKAVLDRTLPHGYIIAQQDNNSQA 112 AK +L LP+ +IAQ+ + + Sbjct: 86 AKEILTTVLPNAIVIAQRIHGATP 109 >UniRef50_C6DKE3 Putative uncharacterized protein n=6 Tax=Enterobacteriaceae RepID=C6DKE3_PECCP Length = 131 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 33 QQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAV 92 Q ++ L I+ + G +PDGF ++ L+ GI KSITP+ D+L++ S +QS AA+ V Sbjct: 39 QDDAMLHIKP-YDGAALPDGFYVYQRLNEKGIAIKSITPEQDSLIVRLASPEQSIAARDV 97 Query: 93 LDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG 127 L +LP I AQQ W +L + G Sbjct: 98 LRLSLPKVTITAQQATTPTPF-WQQKLTQKQSKLG 131 >UniRef50_D2BRP0 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech586 RepID=D2BRP0_DICD5 Length = 117 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 33/80 (41%), Positives = 50/80 (62%) Query: 31 VRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAK 90 E L I +HQG T+PDGF I+ L+ GI KSITP+N+++++ S +QS AAK Sbjct: 32 RLPDEVMLHITPLHQGMTLPDGFYIYQRLNERGIAIKSITPENNSIIVRLSSPEQSGAAK 91 Query: 91 AVLDRTLPHGYIIAQQDNNS 110 +L LP+ +IAQ+ + + Sbjct: 92 EILSIALPNTVVIAQRTHGT 111 >UniRef50_Q9HXI1 Protein-export membrane protein secD n=39 Tax=Bacteria RepID=SECD_PSEAE Length = 620 Score = 101 bits (252), Expect = 6e-21, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 5/123 (4%) Query: 9 RQLAWSGAVLLLVGTL--LLAWSAVRQQESTLAIRAVHQGTTM--PDGFSIWHHLDAHGI 64 + W ++L V + + + + + + I + D L GI Sbjct: 4 KYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTDAGI 63 Query: 65 PFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSH 124 K+ + LI D AK V+ RTL Y++A +WL +L + Sbjct: 64 AVKADSLSKKGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALN-LAQTTPEWLRKLGGSPM 122 Query: 125 RFG 127 + G Sbjct: 123 KLG 125 >UniRef50_C6SDL0 Protein-export membrane protein SecD n=1 Tax=Neisseria meningitidis alpha153 RepID=C6SDL0_NEIME Length = 301 Score = 101 bits (251), Expect = 8e-21, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 RQLAWSGAVLL--LVGTLLLAWSAVRQQESTLAIRAVHQGTTM--PDGFSIWHHLDAHGI 64 R W +++ + + + + + + + Q + F + L GI Sbjct: 3 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKNAGI 62 Query: 65 PFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSH 124 + +++L + F ++ A+ V++ TL GYI A +W+ +++ N Sbjct: 63 QTDGMFVVDNSLKVRFKDTETQLKARDVIENTLGEGYITALNLLADSP-EWMAKIKANPM 121 Query: 125 RFG 127 G Sbjct: 122 FLG 124 >UniRef50_A1SWT8 Protein-export membrane protein SecD n=86 Tax=Gammaproteobacteria RepID=A1SWT8_PSYIN Length = 620 Score = 98.3 bits (243), Expect = 6e-20, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 4/122 (3%) Query: 9 RQLAWSGAVLLLVG--TLLLAWSAVRQQESTLAIRAVHQG-TTMPDGFSIWHHLDAHGIP 65 + W +LL + +LL A + ++ + I A + + L I Sbjct: 4 KYPMWKYLLLLFIVFISLLYAAPNLYGEDPAVQISATRGAKVELSTLGDVQDILKQSNII 63 Query: 66 FKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHR 125 KS +ND LLI SS+ A+ + L ++ A WL + + Sbjct: 64 PKSAVLENDQLLIRLKSSEDQLLARETIIEKLEGDFVTALN-LAPSTPAWLEAIGAGPLK 122 Query: 126 FG 127 G Sbjct: 123 LG 124 >UniRef50_P44591 Protein-export membrane protein secD n=216 Tax=Gammaproteobacteria RepID=SECD_HAEIN Length = 616 Score = 98.3 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 9 RQLAWSGAVLLLVGTL--LLAWSAVRQQESTLAIRAVH-QGTTMPDGFSIWHHLDAHGIP 65 R W +++ + + L + + ++ + I Q + L + +P Sbjct: 4 RYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQISGTRGQEANTSVLGQVQDVLKTNNLP 63 Query: 66 FKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHR 125 KSI +N ++L F ++D AK + L + Y A WL+ N + Sbjct: 64 TKSIVLENGSILARFTNTDDQLLAKDKIAERLGNNYTTALN-LAPATPAWLSMFGANPMK 122 Query: 126 FG 127 +G Sbjct: 123 WG 124 >UniRef50_Q0VS97 Preprotein translocase SecD subunit n=3 Tax=Gammaproteobacteria RepID=Q0VS97_ALCBS Length = 637 Score = 96.0 bits (237), Expect = 3e-19, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 5/127 (3%) Query: 5 RMSLRQLAWSGAVLL--LVGTLLLAWSAVRQQESTLAIRAVHQG--TTMPDGFSIWHHLD 60 R R W +L+ LV L A + + I G + + LD Sbjct: 10 RTMTRYPRWKFFLLMAALVVCSLYALPNLYPDAPAIQISHSEAGGEVSAVARQRVLSALD 69 Query: 61 AHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLR 120 A G+ +LL+ + ++ AK + TL Y++A + QWL + Sbjct: 70 AAGLAHGDGEVVGSSLLVRMNDTEAQLRAKDIAASTLGDNYVVALN-LAATTPQWLRDIG 128 Query: 121 DNSHRFG 127 + G Sbjct: 129 ASPMNLG 135 >UniRef50_C7RB47 Protein-export membrane protein SecD n=2 Tax=Proteobacteria RepID=C7RB47_KANKD Length = 639 Score = 92.5 bits (228), Expect = 3e-18, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 10/127 (7%) Query: 10 QLAWSGAVLLLVGT--LLLAWSAVRQQESTLAIRAVHQGT-TMPDGFSIWHHLDAHGIPF 66 W ++L V LL A + ++ + + A+ T + I G+ Sbjct: 16 YPKWKYVLILFVVAISLLYAAPNIYGEDPAVQLSALRDATISEQQVEQIEAAWQQEGLAS 75 Query: 67 KSITPKNDTLLI-TFDSSDQSAAAKAVLDRTLP-----HGYIIAQQDNNSQAMQWLTRLR 120 K+I + L+I F S+++ A+ + ++ L Y++A WL+ L Sbjct: 76 KAIERDGEKLVIARFQSNEEQLQAQEIANKILNPSLENQSYVVALN-LAPATPDWLSSLG 134 Query: 121 DNSHRFG 127 + G Sbjct: 135 GKPMKLG 141 >UniRef50_B8GTQ2 Preprotein translocase subunit SecD n=50 Tax=Bacteria RepID=B8GTQ2_THISH Length = 623 Score = 89.8 bits (221), Expect = 2e-17, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 4/126 (3%) Query: 6 MSLRQLAWSGAVLLLVGTL--LLAWSAVRQQESTLAIRAVHQG-TTMPDGFSIWHHLDAH 62 M + W ++++V + L A + ++ + I + L Sbjct: 1 MINQYPLWKYLLIVVVVAVGALYAMPNLYPEDPAVQISNTTTDEVDEATRRQVEAVLAGR 60 Query: 63 GIPFKS-ITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRD 121 G+ K+ + +L+ FD++D A +L L + + WL Sbjct: 61 GLNPKTGVEYDGQHVLLRFDNTDDQLQAADILRTALMGTQNVVALNLAPATPDWLRTFNA 120 Query: 122 NSHRFG 127 G Sbjct: 121 RPMSLG 126 >UniRef50_Q21RN8 Protein-export membrane protein SecD n=9 Tax=Betaproteobacteria RepID=Q21RN8_RHOFD Length = 626 Score = 89.4 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 10/128 (7%) Query: 9 RQLAWSGAVLLL--VGTLLLAWSAVRQQESTLAIRAVHQGTTMPDG--FSIWHHLDAHGI 64 R W ++L+ V ++ + + + AV G + + L G+ Sbjct: 3 RYPVWKYVIILIALVVGVVYTLPNFFGEAPAVQVSAVKVGVKVDSSTKVQVEAVLQTAGL 62 Query: 65 PFKSITPKNDTLLITFDSSDQSAAAKAVLDRTL-----PHGYIIAQQDNNSQAMQWLTRL 119 +T +++ F +++ AK + + L YI+A + WLT L Sbjct: 63 AADVVTLDGNSVKARFGNTETQLKAKDAIQKALIPDPANPNYIVALNLLSRSPT-WLTAL 121 Query: 120 RDNSHRFG 127 R G Sbjct: 122 RAFPMYLG 129 >UniRef50_A1TW41 Protein-export membrane protein SecD n=34 Tax=Betaproteobacteria RepID=A1TW41_ACIAC Length = 632 Score = 87.9 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 10/128 (7%) Query: 9 RQLAWSGAVLLLVG--TLLLAWSAVRQQESTLAIRAVHQGTTMPDGF--SIWHHLDAHGI 64 R W A+L++V +L + V + + + + + + L GI Sbjct: 3 RYPVWKYAILVIVLLVGILYSLPNVFGEAPAVQVSSAKASVKVDASLQRRVEEALQGAGI 62 Query: 65 PFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHG-----YIIAQQDNNSQAMQWLTRL 119 ++ +++ FD+ D AK V+ + L YI+A S++ WLT L Sbjct: 63 TPDVVSLDGNSVRARFDTPDTQLKAKDVIQKALVPDAADPQYIVALN-LVSRSPAWLTAL 121 Query: 120 RDNSHRFG 127 G Sbjct: 122 HAQPVYLG 129 >UniRef50_Q145I2 SecD export membrane protein n=111 Tax=cellular organisms RepID=Q145I2_BURXL Length = 695 Score = 81.0 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 14/132 (10%) Query: 9 RQLAWSGAVLLL--VGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGF--SIWHHLDAHGI 64 R W AV+L+ V L+ + + + + + + ++ L A+ I Sbjct: 3 RYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQVSSGKATVKLDSTTLSAVEAALAANQI 62 Query: 65 PFKSITPKND----TLLITFDSSDQSAAAKAVLDRTLPHG-----YIIAQQDNNSQAMQW 115 +T N + + +D K +L ++L YI+A ++ +W Sbjct: 63 KPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQKSLNSDPSDPQYIVALNLQSASP-RW 121 Query: 116 LTRLRDNSHRFG 127 LT L G Sbjct: 122 LTALHALPMYLG 133 >UniRef50_Q31FZ7 Protein-export membrane protein SecD n=7 Tax=Bacteria RepID=Q31FZ7_THICR Length = 625 Score = 80.2 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 8/126 (6%) Query: 7 SLRQLAWSGAVLLLVGTLL--LAWSAVRQQESTLAIRAVHQ---GTTMPDGFSIWHHLDA 61 S + AW +LL+V L A + + + I + D + L Sbjct: 10 SNQYPAWKYLLLLIVLVLGVIYAAPNIFGDDPAVQISPAKSVQFDASTEDL--VTQTLQK 67 Query: 62 HGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRD 121 + KS+ +N LI F ++D+ A++ L + ++A L + Sbjct: 68 ASLKPKSMAYQNGQFLIRFHNTDEQMKARSALKEVMGRQAVVALN-LAPATPDILRAVGG 126 Query: 122 NSHRFG 127 G Sbjct: 127 EPMYLG 132 >UniRef50_B5EK06 Protein-export membrane protein SecD n=3 Tax=Acidithiobacillus RepID=B5EK06_ACIF5 Length = 594 Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 4/121 (3%) Query: 9 RQLAWSGAVLLLVG--TLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPF 66 R W ++L+V +L A S + +RA GT +P + L A GIP Sbjct: 3 RYPWWKYLIILVVVLPSLFYALPNFYGWHSAVEVRAP-AGTLLPPVATQQGWLQAAGIPV 61 Query: 67 KSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRF 126 ++ F ++D A+ +L LP + +++ WL + Sbjct: 62 TRVSSGEKGSTFFFPNNDAQGLAETLLQNKLPANAQVILSQMSAEP-DWLRSIGGKPVNL 120 Query: 127 G 127 G Sbjct: 121 G 121 >UniRef50_A5EWX7 Preprotein translocase, SecD subunit n=2 Tax=Cardiobacteriaceae RepID=A5EWX7_DICNV Length = 621 Score = 70.2 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 4/120 (3%) Query: 10 QLAWSGAVLLLVGTLLLAW--SAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFK 67 W A++++V L L + + + +R I L A IP+K Sbjct: 5 FTPWKYALIVMVLLLGLLFALPNWYGKSPAVQMRFTATPAEQNTVDRIASLLSAEKIPYK 64 Query: 68 SITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG 127 +I + + I F +D+ AK VL + P I+ + +W+ L + G Sbjct: 65 NIVRSAENIDILFAQTDEQIEAKDVLAKHYPDA-EISVNLLANTP-RWMQALGLDPANLG 122 >UniRef50_Q7MD23 Preprotein translocase subunit SecD n=87 Tax=Gammaproteobacteria RepID=Q7MD23_VIBVY Length = 628 Score = 67.1 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 7/124 (5%) Query: 10 QLAWSGAVLL--LVGTLLLAWSAVRQQESTLAIRAVHQ--GTTMP--DGFSIWHHLDAHG 63 AW VL+ LV L A ++ ++ I + G T D + L+ Sbjct: 29 YSAWKYVVLITTLVILTLSAIPTWFGEQPSIQISYQNNVKGPTTEHYDVVQLKGLLEHQS 88 Query: 64 IPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNS 123 + +T K + F + + A+ +LD TL I+ + A QWL+ + N Sbjct: 89 VSVDKVTEKEGVTTLVFSDENAQSQARKILDNTLGDDANISFSYVS-VAPQWLSDMGFNP 147 Query: 124 HRFG 127 + G Sbjct: 148 IKLG 151 >UniRef50_UPI000169A046 preprotein translocase subunit SecD n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169A046 Length = 234 Score = 59.0 bits (141), Expect = 4e-08, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 3/87 (3%) Query: 41 RAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHG 100 R T P I L A I K+I P LL+ F SS+ A V+ L Sbjct: 7 RRAQIDATTP--LRINTALAAAQITAKAIEPLEGKLLVRFSSSEDQLKAVEVIAAELGGD 64 Query: 101 YIIAQQDNNSQAMQWLTRLRDNSHRFG 127 + A WL L G Sbjct: 65 FNQALT-LAPDLPDWLRSLGAEPMYLG 90 >UniRef50_Q7VQA9 Protein-export membrane protein SecD n=1 Tax=Candidatus Blochmannia floridanus RepID=Q7VQA9_BLOFL Length = 624 Score = 51.3 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 6/120 (5%) Query: 13 WSGAVLLLVGTL--LLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHH---LDAHGIPFK 67 W V+ + + + A + ++ ++I D + L I K Sbjct: 15 WKYVVIFITLMMGFIYAIPNLYKEGFAISITPYIFNNHNLDNVLVSDIITGLKKEEIFSK 74 Query: 68 SITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG 127 + + + I F S A +L Y+++ WL +R + G Sbjct: 75 FVVSNVNKIQICFFSELDQIRAYQILYTIYSERYLVSCTKI-PDMPLWLFYIRAKPLKLG 133 >UniRef50_A4SLM7 Protein-export membrane protein SecD n=2 Tax=Aeromonas RepID=A4SLM7_AERS4 Length = 621 Score = 49.4 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 12/123 (9%) Query: 9 RQLAWSGAVLLLVGTLL--LAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPF 66 R W A+LLL+ + ++ +L +H T++ + L + I Sbjct: 32 RMSKWQYALLLLMLFTFAFYSLPTFFGEQPSL---GLHGQTSLTEAQR--TLLADNQIAP 86 Query: 67 KSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNN--SQAMQWLTRLRDNSH 124 + + + + F S + AK +L++ GY A S A W+++L Sbjct: 87 VKQVQQKERVELVFSSQSEQQRAKQLLEQ---QGYDSAALTLEFYSNAPTWISQLGAAPI 143 Query: 125 RFG 127 + G Sbjct: 144 KLG 146 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.127 0.317 Lambda K H 0.267 0.0392 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 621,137,540 Number of Sequences: 3077464 Number of extensions: 18385881 Number of successful extensions: 63660 Number of sequences better than 1.0e-01: 30 Number of HSP's better than 0.1 without gapping: 39 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 63562 Number of HSP's gapped (non-prelim): 60 length of query: 127 length of database: 1,040,396,356 effective HSP length: 93 effective length of query: 34 effective length of database: 754,192,204 effective search space: 25642534936 effective search space used: 25642534936 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 87 (38.2 bits)