BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (147 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P77365 Uncharacterized lipoprotein yafY n=7 Tax=Escheri... 277 6e-74 UniRef50_C9QRE5 Transcriptional regulator protein-like protein n... 276 1e-73 UniRef50_B1IPT0 Putative uncharacterized protein n=5 Tax=Enterob... 154 9e-37 >UniRef50_P77365 Uncharacterized lipoprotein yafY n=7 Tax=Escherichia coli RepID=YAFY_ECOLI Length = 147 Score = 277 bits (709), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 133/147 (90%), Positives = 140/147 (95%) Query: 1 MKRKTLPLLALVATSLFLSACDDRSDDLKAISKFKDLTPPRFSDVVSRQDDVSEEWSQVG 60 MKRKTLPLLALVAT+LFL ACDDRSDDLKAISKFKDLTPPRFSDVVS QDDVSEEWSQV Sbjct: 1 MKRKTLPLLALVATTLFLIACDDRSDDLKAISKFKDLTPPRFSDVVSHQDDVSEEWSQVD 60 Query: 61 FSSGLTLQVLRTRESPDGCEGGSYYYLVDMEEKTVQPLMNALCIADNIKLEYHEVTDPYT 120 + SG TLQVLRTR+SPDGCE GSYYYLVDM+EKTVQPLMNALCIADNIKLEY EVTDPYT Sbjct: 61 YLSGPTLQVLRTRQSPDGCEDGSYYYLVDMQEKTVQPLMNALCIADNIKLEYQEVTDPYT 120 Query: 121 KEKYFEYSHDGKLMGRLLIPSNPDNRE 147 KEKYFEY+HDGKLMG+LLIPSNPDN+E Sbjct: 121 KEKYFEYAHDGKLMGQLLIPSNPDNQE 147 >UniRef50_C9QRE5 Transcriptional regulator protein-like protein n=1 Tax=Escherichia coli DH1 RepID=C9QRE5_ECOD1 Length = 285 Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 133/147 (90%), Positives = 140/147 (95%) Query: 1 MKRKTLPLLALVATSLFLSACDDRSDDLKAISKFKDLTPPRFSDVVSRQDDVSEEWSQVG 60 MKRKTLPLLALVAT+LFL ACDDRSDDLKAISKFKDLTPPRFSDVVS QDDVSEEWSQV Sbjct: 139 MKRKTLPLLALVATTLFLIACDDRSDDLKAISKFKDLTPPRFSDVVSHQDDVSEEWSQVD 198 Query: 61 FSSGLTLQVLRTRESPDGCEGGSYYYLVDMEEKTVQPLMNALCIADNIKLEYHEVTDPYT 120 + SG TLQVLRTR+SPDGCE GSYYYLVDM+EKTVQPLMNALCIADNIKLEY EVTDPYT Sbjct: 199 YLSGPTLQVLRTRQSPDGCEDGSYYYLVDMQEKTVQPLMNALCIADNIKLEYQEVTDPYT 258 Query: 121 KEKYFEYSHDGKLMGRLLIPSNPDNRE 147 KEKYFEY+HDGKLMG+LLIPSNPDN+E Sbjct: 259 KEKYFEYAHDGKLMGQLLIPSNPDNQE 285 >UniRef50_B1IPT0 Putative uncharacterized protein n=5 Tax=Enterobacteriaceae RepID=B1IPT0_ECOLC Length = 150 Score = 154 bits (389), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 72/137 (52%), Positives = 96/137 (70%), Gaps = 1/137 (0%) Query: 11 LVATSLFLSACDDRSD-DLKAISKFKDLTPPRFSDVVSRQDDVSEEWSQVGFSSGLTLQV 69 +V +L LS CD + D +K I++FKDLTPP FSDVV+ + D+ +EW + V Sbjct: 13 VVIGTLLLSGCDSKEDAGVKTIARFKDLTPPPFSDVVAHKSDIEQEWVKKDAFGTPLYTV 72 Query: 70 LRTRESPDGCEGGSYYYLVDMEEKTVQPLMNALCIADNIKLEYHEVTDPYTKEKYFEYSH 129 ++TR+SP+GCE GSYYY+ DM++KTVQPL+ ALC+ADNI L + TD YT EK YSH Sbjct: 73 MKTRQSPEGCESGSYYYIADMQQKTVQPLIAALCLADNITLSFRIETDSYTGEKSVVYSH 132 Query: 130 DGKLMGRLLIPSNPDNR 146 DGK MG+LL+P N +N Sbjct: 133 DGKEMGKLLLPDNQENH 149 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C9QRE5 Transcriptional regulator protein-like protein n... 288 5e-77 UniRef50_P77365 Uncharacterized lipoprotein yafY n=7 Tax=Escheri... 272 3e-72 UniRef50_B1IPT0 Putative uncharacterized protein n=5 Tax=Enterob... 238 3e-62 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_C9QRE5 Transcriptional regulator protein-like protein n=1 Tax=Escherichia coli DH1 RepID=C9QRE5_ECOD1 Length = 285 Score = 288 bits (736), Expect = 5e-77, Method: Composition-based stats. Identities = 133/147 (90%), Positives = 140/147 (95%) Query: 1 MKRKTLPLLALVATSLFLSACDDRSDDLKAISKFKDLTPPRFSDVVSRQDDVSEEWSQVG 60 MKRKTLPLLALVAT+LFL ACDDRSDDLKAISKFKDLTPPRFSDVVS QDDVSEEWSQV Sbjct: 139 MKRKTLPLLALVATTLFLIACDDRSDDLKAISKFKDLTPPRFSDVVSHQDDVSEEWSQVD 198 Query: 61 FSSGLTLQVLRTRESPDGCEGGSYYYLVDMEEKTVQPLMNALCIADNIKLEYHEVTDPYT 120 + SG TLQVLRTR+SPDGCE GSYYYLVDM+EKTVQPLMNALCIADNIKLEY EVTDPYT Sbjct: 199 YLSGPTLQVLRTRQSPDGCEDGSYYYLVDMQEKTVQPLMNALCIADNIKLEYQEVTDPYT 258 Query: 121 KEKYFEYSHDGKLMGRLLIPSNPDNRE 147 KEKYFEY+HDGKLMG+LLIPSNPDN+E Sbjct: 259 KEKYFEYAHDGKLMGQLLIPSNPDNQE 285 >UniRef50_P77365 Uncharacterized lipoprotein yafY n=7 Tax=Escherichia coli RepID=YAFY_ECOLI Length = 147 Score = 272 bits (695), Expect = 3e-72, Method: Composition-based stats. Identities = 133/147 (90%), Positives = 140/147 (95%) Query: 1 MKRKTLPLLALVATSLFLSACDDRSDDLKAISKFKDLTPPRFSDVVSRQDDVSEEWSQVG 60 MKRKTLPLLALVAT+LFL ACDDRSDDLKAISKFKDLTPPRFSDVVS QDDVSEEWSQV Sbjct: 1 MKRKTLPLLALVATTLFLIACDDRSDDLKAISKFKDLTPPRFSDVVSHQDDVSEEWSQVD 60 Query: 61 FSSGLTLQVLRTRESPDGCEGGSYYYLVDMEEKTVQPLMNALCIADNIKLEYHEVTDPYT 120 + SG TLQVLRTR+SPDGCE GSYYYLVDM+EKTVQPLMNALCIADNIKLEY EVTDPYT Sbjct: 61 YLSGPTLQVLRTRQSPDGCEDGSYYYLVDMQEKTVQPLMNALCIADNIKLEYQEVTDPYT 120 Query: 121 KEKYFEYSHDGKLMGRLLIPSNPDNRE 147 KEKYFEY+HDGKLMG+LLIPSNPDN+E Sbjct: 121 KEKYFEYAHDGKLMGQLLIPSNPDNQE 147 >UniRef50_B1IPT0 Putative uncharacterized protein n=5 Tax=Enterobacteriaceae RepID=B1IPT0_ECOLC Length = 150 Score = 238 bits (608), Expect = 3e-62, Method: Composition-based stats. Identities = 72/137 (52%), Positives = 96/137 (70%), Gaps = 1/137 (0%) Query: 11 LVATSLFLSACDDRSD-DLKAISKFKDLTPPRFSDVVSRQDDVSEEWSQVGFSSGLTLQV 69 +V +L LS CD + D +K I++FKDLTPP FSDVV+ + D+ +EW + V Sbjct: 13 VVIGTLLLSGCDSKEDAGVKTIARFKDLTPPPFSDVVAHKSDIEQEWVKKDAFGTPLYTV 72 Query: 70 LRTRESPDGCEGGSYYYLVDMEEKTVQPLMNALCIADNIKLEYHEVTDPYTKEKYFEYSH 129 ++TR+SP+GCE GSYYY+ DM++KTVQPL+ ALC+ADNI L + TD YT EK YSH Sbjct: 73 MKTRQSPEGCESGSYYYIADMQQKTVQPLIAALCLADNITLSFRIETDSYTGEKSVVYSH 132 Query: 130 DGKLMGRLLIPSNPDNR 146 DGK MG+LL+P N +N Sbjct: 133 DGKEMGKLLLPDNQENH 149 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.135 0.390 Lambda K H 0.267 0.0401 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 607,148,059 Number of Sequences: 3077464 Number of extensions: 22580644 Number of successful extensions: 52528 Number of sequences better than 1.0e-01: 3 Number of HSP's better than 0.1 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52520 Number of HSP's gapped (non-prelim): 7 length of query: 147 length of database: 1,040,396,356 effective HSP length: 110 effective length of query: 37 effective length of database: 701,875,316 effective search space: 25969386692 effective search space used: 25969386692 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 87 (38.2 bits)