BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (72 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P31121 Multiple antibiotic resistance protein marB n=58... 148 5e-35 UniRef50_D2TIE3 Multiple antibiotic resistance protein n=2 Tax=E... 71 1e-11 UniRef50_B7LRC0 Multiple antibiotic resistance protein, putative... 65 9e-10 UniRef50_C4X862 Multiple antibiotic resistance protein n=5 Tax=K... 64 1e-09 UniRef50_P0A215 Multiple antibiotic resistance protein marB n=32... 57 2e-07 UniRef50_A7MPT0 Putative uncharacterized protein n=2 Tax=Cronoba... 47 2e-04 >UniRef50_P31121 Multiple antibiotic resistance protein marB n=58 Tax=Enterobacteriaceae RepID=MARB_ECOLI Length = 72 Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD Sbjct: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 Query: 61 ALGVPYYNQHAM 72 ALGVPYYNQHAM Sbjct: 61 ALGVPYYNQHAM 72 >UniRef50_D2TIE3 Multiple antibiotic resistance protein n=2 Tax=Enterobacteriaceae RepID=D2TIE3_CITRO Length = 72 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 39/56 (69%) Query: 17 AQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSDALGVPYYNQHAM 72 Q VAEQ+ +PV + + +V+P +Q H PFDL M GSDKSD LGVPYYN+H + Sbjct: 17 GQSVAEQSARPVASDNRDAIVIPTAQAHSPFDLTPMSAGSDKSDELGVPYYNRHRL 72 >UniRef50_B7LRC0 Multiple antibiotic resistance protein, putative exported protein n=2 Tax=Escherichia RepID=B7LRC0_ESCF3 Length = 72 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 38/68 (55%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MK + L+LFS AE T P + V++P S P DLNHMG GSDKSD Sbjct: 1 MKFYAVTGTTLLLLFSGAVFAEHTQMPETHETSEKVIIPSSMAQTPADLNHMGVGSDKSD 60 Query: 61 ALGVPYYN 68 LGVPY+N Sbjct: 61 VLGVPYFN 68 >UniRef50_C4X862 Multiple antibiotic resistance protein n=5 Tax=Klebsiella RepID=C4X862_KLEPN Length = 72 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 42/72 (58%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MK ++A L L S+ AEQ T PV + + +++P PFD NHM G+DKSD Sbjct: 1 MKLFAAAAIVLLSLASSLSYAEQNTTPVRQNQRDTMIIPSEHNDSPFDFNHMAAGNDKSD 60 Query: 61 ALGVPYYNQHAM 72 LGVPYY QH + Sbjct: 61 ELGVPYYQQHDL 72 >UniRef50_P0A215 Multiple antibiotic resistance protein marB n=32 Tax=Enterobacteriaceae RepID=MARB_SALTI Length = 71 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MK L A+ L++ S G+AEQT PV + +V+++P + PP DL+ + SDKSD Sbjct: 1 MKMLFPALPGLLLIASGYGIAEQTLLPVAQNSRDVMLLPCVGD-PPNDLHPVSVNSDKSD 59 Query: 61 ALGVPYYN-QH 70 LGVPYYN QH Sbjct: 60 ELGVPYYNDQH 70 >UniRef50_A7MPT0 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MPT0_ENTS8 Length = 70 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Query: 27 PVVTSCAN--VVVVPPSQEHPPFDLNHMGTGSDKSDALGVPYYNQ 69 P +CA ++ P + H DL+H GSDKSD LGVPYYNQ Sbjct: 24 PKTDACAGDTSTMMVPIEHHESLDLSHRSAGSDKSDELGVPYYNQ 68 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P31121 Multiple antibiotic resistance protein marB n=58... 108 5e-23 UniRef50_B7LRC0 Multiple antibiotic resistance protein, putative... 106 3e-22 UniRef50_P0A215 Multiple antibiotic resistance protein marB n=32... 100 1e-20 UniRef50_C4X862 Multiple antibiotic resistance protein n=5 Tax=K... 100 2e-20 UniRef50_D2TIE3 Multiple antibiotic resistance protein n=2 Tax=E... 91 1e-17 UniRef50_A7MPT0 Putative uncharacterized protein n=2 Tax=Cronoba... 67 2e-10 Sequences not found previously or not previously below threshold: UniRef50_Q9K5A6 MarB protein (Fragment) n=1 Tax=Enterobacter aer... 47 2e-04 >UniRef50_P31121 Multiple antibiotic resistance protein marB n=58 Tax=Enterobacteriaceae RepID=MARB_ECOLI Length = 72 Score = 108 bits (270), Expect = 5e-23, Method: Composition-based stats. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD Sbjct: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 Query: 61 ALGVPYYNQHAM 72 ALGVPYYNQHAM Sbjct: 61 ALGVPYYNQHAM 72 >UniRef50_B7LRC0 Multiple antibiotic resistance protein, putative exported protein n=2 Tax=Escherichia RepID=B7LRC0_ESCF3 Length = 72 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 39/72 (54%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MK + L+LFS AE T P + V++P S P DLNHMG GSDKSD Sbjct: 1 MKFYAVTGTTLLLLFSGAVFAEHTQMPETHETSEKVIIPSSMAQTPADLNHMGVGSDKSD 60 Query: 61 ALGVPYYNQHAM 72 LGVPY+N + Sbjct: 61 VLGVPYFNGQRL 72 >UniRef50_P0A215 Multiple antibiotic resistance protein marB n=32 Tax=Enterobacteriaceae RepID=MARB_SALTI Length = 71 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MK L A+ L++ S G+AEQT PV + +V+++P + PP DL+ + SDKSD Sbjct: 1 MKMLFPALPGLLLIASGYGIAEQTLLPVAQNSRDVMLLPCVGD-PPNDLHPVSVNSDKSD 59 Query: 61 ALGVPYYNQHAM 72 LGVPYYN + Sbjct: 60 ELGVPYYNDQHL 71 >UniRef50_C4X862 Multiple antibiotic resistance protein n=5 Tax=Klebsiella RepID=C4X862_KLEPN Length = 72 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 42/72 (58%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MK ++A L L S+ AEQ T PV + + +++P PFD NHM G+DKSD Sbjct: 1 MKLFAAAAIVLLSLASSLSYAEQNTTPVRQNQRDTMIIPSEHNDSPFDFNHMAAGNDKSD 60 Query: 61 ALGVPYYNQHAM 72 LGVPYY QH + Sbjct: 61 ELGVPYYQQHDL 72 >UniRef50_D2TIE3 Multiple antibiotic resistance protein n=2 Tax=Enterobacteriaceae RepID=D2TIE3_CITRO Length = 72 Score = 90.6 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 39/72 (54%), Positives = 50/72 (69%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MK LSSA+ A L+ S Q VAEQ+ +PV + + +V+P +Q H PFDL M GSDKSD Sbjct: 1 MKLLSSAMLALLLAVSGQSVAEQSARPVASDNRDAIVIPTAQAHSPFDLTPMSAGSDKSD 60 Query: 61 ALGVPYYNQHAM 72 LGVPYYN+H + Sbjct: 61 ELGVPYYNRHRL 72 >UniRef50_A7MPT0 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MPT0_ENTS8 Length = 70 Score = 66.7 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCAN--VVVVPPSQEHPPFDLNHMGTGSDK 58 MK ++ A A L L S +A P +CA ++ P + H DL+H GSDK Sbjct: 1 MKSVTCAAALLLALTSGYALA---GSPKTDACAGDTSTMMVPIEHHESLDLSHRSAGSDK 57 Query: 59 SDALGVPYYNQHA 71 SD LGVPYYNQ Sbjct: 58 SDELGVPYYNQSR 70 >UniRef50_Q9K5A6 MarB protein (Fragment) n=1 Tax=Enterobacter aerogenes RepID=Q9K5A6_ENTAE Length = 34 Score = 46.7 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 18/34 (52%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCAN 34 MK ++A + L + Q AEQTT PV + + Sbjct: 1 MKLFATAAIVLMALAAGQSYAEQTTTPVRHNNRD 34 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B7LRC0 Multiple antibiotic resistance protein, putative... 105 6e-22 UniRef50_P31121 Multiple antibiotic resistance protein marB n=58... 102 4e-21 UniRef50_P0A215 Multiple antibiotic resistance protein marB n=32... 98 7e-20 UniRef50_C4X862 Multiple antibiotic resistance protein n=5 Tax=K... 97 2e-19 UniRef50_D2TIE3 Multiple antibiotic resistance protein n=2 Tax=E... 88 9e-17 UniRef50_A7MPT0 Putative uncharacterized protein n=2 Tax=Cronoba... 72 4e-12 UniRef50_Q9K5A6 MarB protein (Fragment) n=1 Tax=Enterobacter aer... 49 3e-05 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_B7LRC0 Multiple antibiotic resistance protein, putative exported protein n=2 Tax=Escherichia RepID=B7LRC0_ESCF3 Length = 72 Score = 105 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 39/72 (54%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MK + L+LFS AE T P + V++P S P DLNHMG GSDKSD Sbjct: 1 MKFYAVTGTTLLLLFSGAVFAEHTQMPETHETSEKVIIPSSMAQTPADLNHMGVGSDKSD 60 Query: 61 ALGVPYYNQHAM 72 LGVPY+N + Sbjct: 61 VLGVPYFNGQRL 72 >UniRef50_P31121 Multiple antibiotic resistance protein marB n=58 Tax=Enterobacteriaceae RepID=MARB_ECOLI Length = 72 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD Sbjct: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 Query: 61 ALGVPYYNQHAM 72 ALGVPYYNQHAM Sbjct: 61 ALGVPYYNQHAM 72 >UniRef50_P0A215 Multiple antibiotic resistance protein marB n=32 Tax=Enterobacteriaceae RepID=MARB_SALTI Length = 71 Score = 98.2 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MK L A+ L++ S G+AEQT PV + +V+++P + PP DL+ + SDKSD Sbjct: 1 MKMLFPALPGLLLIASGYGIAEQTLLPVAQNSRDVMLLPCVGD-PPNDLHPVSVNSDKSD 59 Query: 61 ALGVPYYNQHAM 72 LGVPYYN + Sbjct: 60 ELGVPYYNDQHL 71 >UniRef50_C4X862 Multiple antibiotic resistance protein n=5 Tax=Klebsiella RepID=C4X862_KLEPN Length = 72 Score = 97.1 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 42/72 (58%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MK ++A L L S+ AEQ T PV + + +++P PFD NHM G+DKSD Sbjct: 1 MKLFAAAAIVLLSLASSLSYAEQNTTPVRQNQRDTMIIPSEHNDSPFDFNHMAAGNDKSD 60 Query: 61 ALGVPYYNQHAM 72 LGVPYY QH + Sbjct: 61 ELGVPYYQQHDL 72 >UniRef50_D2TIE3 Multiple antibiotic resistance protein n=2 Tax=Enterobacteriaceae RepID=D2TIE3_CITRO Length = 72 Score = 87.8 bits (216), Expect = 9e-17, Method: Composition-based stats. Identities = 39/72 (54%), Positives = 50/72 (69%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD 60 MK LSSA+ A L+ S Q VAEQ+ +PV + + +V+P +Q H PFDL M GSDKSD Sbjct: 1 MKLLSSAMLALLLAVSGQSVAEQSARPVASDNRDAIVIPTAQAHSPFDLTPMSAGSDKSD 60 Query: 61 ALGVPYYNQHAM 72 LGVPYYN+H + Sbjct: 61 ELGVPYYNRHRL 72 >UniRef50_A7MPT0 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MPT0_ENTS8 Length = 70 Score = 72.4 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCAN--VVVVPPSQEHPPFDLNHMGTGSDK 58 MK ++ A A L L S +A P +CA ++ P + H DL+H GSDK Sbjct: 1 MKSVTCAAALLLALTSGYALA---GSPKTDACAGDTSTMMVPIEHHESLDLSHRSAGSDK 57 Query: 59 SDALGVPYYNQHA 71 SD LGVPYYNQ Sbjct: 58 SDELGVPYYNQSR 70 >UniRef50_Q9K5A6 MarB protein (Fragment) n=1 Tax=Enterobacter aerogenes RepID=Q9K5A6_ENTAE Length = 34 Score = 49.3 bits (116), Expect = 3e-05, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 18/34 (52%) Query: 1 MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCAN 34 MK ++A + L + Q AEQTT PV + + Sbjct: 1 MKLFATAAIVLMALAAGQSYAEQTTTPVRHNNRD 34 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.131 0.359 Lambda K H 0.267 0.0402 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 384,131,423 Number of Sequences: 3077464 Number of extensions: 11354254 Number of successful extensions: 30320 Number of sequences better than 1.0e-01: 7 Number of HSP's better than 0.1 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30295 Number of HSP's gapped (non-prelim): 20 length of query: 72 length of database: 1,040,396,356 effective HSP length: 43 effective length of query: 29 effective length of database: 908,065,404 effective search space: 26333896716 effective search space used: 26333896716 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 87 (38.2 bits)