10/01/2012 06:05:19 : INFO  : Run start: Tue Jan 10 06:05:19 GMT 2012
10/01/2012 06:05:21 : INFO  : Initialised job
10/01/2012 06:05:21 : INFO  : Renaming log file 'phyre2_20120110_060519.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/981abe20ffaa131c/phyre_20120110_060519.log'
10/01/2012 06:05:22 : INFO  : Initialised job:
Sequence
>batch____
MKITTVGVCIISGIFPLLILPQLPGTLTLAFLTLFACVLAFIPVKTVRYIALTLLFFVWG
ILSAKQILWAGETLTGATQDAIVEITATDGMTTHYGQITHLQGRRIFPASGLVMYGEYLP
QAVCAGQQWSMKLKVRAVHGQLNDGGFDSQRYAIAQHQPLTGRFLQASVIEPNCSLRAQY
LASLQTTLQPYPWNAVILGLGMGERLSVPKEIKNIMRDTGTAHLMAISGLHIAFAALLAA
GLIRSGQIFLPGRWIHWQIPLIGGICCAAFYAWLTGMQPPALRTMVALATWGMLKLSGRQ
WSGWDVWICCLAAILLMDPVAILSQSLWLSAAAVAALIFWYQWFPCPEWQLPPVLRAVVS
LIHLQLGITLLLMPVQIVIFHGISLTSFIANLLAIPLVTFITVPLILAAMVVHLSGPLIL
EQGLWFLADRSLALLFWGLKSLPEGWINIAECWQWLSFSPWFLLVVWRLNAWRTLPAMCV
AGGLLMCWPLWQKPRPDEWQLYMLDVGQGLAMVIARNGKAILYDTGLAWPEGDSGQQLII
PWLHWHNLEPEGVILSHEHLDHRGGLDSILHIWPMLWIRSPLNWEHHQPCVRGEAWQWQG
LRFSAHWPLQGSNDKGNNHSCVVKVDDGTNSILLTGDIEAPAEQKMLSRYWQQVQATLLQ
VPHHGSNTSSSLPLIQRVNGKVALASASRYNAWRLPSNKVKHRYQLQGYQWIDTPHQGQT
TVNFSAQGWRISSLREQILPRWYHQWFGVPVDNG

10/01/2012 06:05:22 : INFO  : Checked sequence
10/01/2012 06:05:23 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 06:05:23 : INFO  : PSI-BLAST 3 iterations
10/01/2012 06:09:43 : INFO  : PSI-BLAST 5 iterations
10/01/2012 06:14:49 : INFO  : Finished PSI-BLAST
10/01/2012 06:14:50 : INFO  : Running Buildali to generate a3m file
10/01/2012 06:37:11 : INFO  : Converting to HMM
10/01/2012 06:37:23 : INFO  : Calibrating HMM
10/01/2012 06:37:54 : INFO  : Searching HMM database
10/01/2012 06:55:02 : INFO  : Finished buildali
10/01/2012 06:55:03 : INFO  : Predicting secondary structure
10/01/2012 06:55:07 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 06:55:08 : INFO  : Predicting Disordered regions
10/01/2012 06:55:10 : INFO  : Predicted Disorder (Disopred)
10/01/2012 06:55:11 : INFO  : Running memsat_svm check
10/01/2012 06:59:10 : INFO  : Running memsat_svm full
10/01/2012 07:02:02 : INFO  : Predicted Transmembrane (memsat_svm) ID '981abe20ffaa131c'
10/01/2012 07:02:03 : INFO  : Initialising fold library search
10/01/2012 07:02:04 : INFO  : Initialised search input
10/01/2012 07:02:05 : INFO  : Building Ensemble models
10/01/2012 07:02:07 : INFO  : Building hh.c2bibA_.model.1.pdb
10/01/2012 07:02:16 : INFO  : Building hh.d1wraa1.model.2.pdb
10/01/2012 07:02:23 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/981abe20ffaa131c/hh.d1wraa1.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/981abe20ffaa131c/d1wraa1.2.pdb
10/01/2012 07:02:25 : INFO  : Building c2bibA_.1.pdb
10/01/2012 07:02:35 : INFO  : Building d1wraa1.2.pdb
10/01/2012 07:02:42 : INFO  : Building d1k07a_.3.pdb
10/01/2012 07:02:49 : INFO  : Building d1qh5a_.4.pdb
10/01/2012 07:02:56 : INFO  : Building d2dkfa1.5.pdb
10/01/2012 07:03:06 : INFO  : Building c2xf4A_.6.pdb
10/01/2012 07:03:13 : INFO  : Building d1xm8a_.7.pdb
10/01/2012 07:03:20 : INFO  : Building d2i7ta1.8.pdb
10/01/2012 07:03:29 : INFO  : Building c3kl7A_.9.pdb
10/01/2012 07:03:36 : INFO  : Building c2ohiB_.10.pdb
10/01/2012 07:03:45 : INFO  : Building c2p4zA_.11.pdb
10/01/2012 07:03:52 : INFO  : Building d2qeda1.12.pdb
10/01/2012 07:03:59 : INFO  : Building c3zq4C_.13.pdb
10/01/2012 07:04:07 : INFO  : Building c2zwrA_.14.pdb
10/01/2012 07:04:14 : INFO  : Building d2q0ia1.15.pdb
10/01/2012 07:04:21 : INFO  : Building c2gcuD_.16.pdb
10/01/2012 07:04:29 : INFO  : Building c1zkpD_.17.pdb
10/01/2012 07:04:36 : INFO  : Building d1m2xa_.18.pdb
10/01/2012 07:04:44 : INFO  : Building d2gmna1.19.pdb
10/01/2012 07:04:54 : INFO  : Building c3r2uC_.20.pdb
10/01/2012 07:05:19 : INFO  : Finished HH model building
10/01/2012 07:05:20 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 07:06:03 : INFO  : html domain output complete ID '981abe20ffaa131c'
10/01/2012 08:12:46 : INFO  : Run end  : Tue Jan 10 08:12:46 GMT 2012
