Phyre 2 alignment of P45548 with c3n7qA_

Return to main results | Retrieve Phyre Job Id

Job Description | P45548
Confidence | 25.79% | Date | Thu Jan 5 12:03:05 GMT 2012
Rank | 195 | Aligned Residues | 34
% Identity | 21% | Template | c3n7qA_
PDB info | PDB header:transcription, replication/dna | Chain: A: PDB Molecule:transcription termination factor, mitochondrial; | PDBTitle: crystal structure of human mitochondrial mterf fragment (aa 99-399) in2 complex with a 12-mer dna encompassing the trnaleu(uur) binding3 sequence
Resolution | 2.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 259 | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | Y | L | L | T | T | F | I | P | Q | L | R | Q | S | G | F | S | Q | A | D | V | D | V | M | L | R | E | N | P | S | Q | F | F | Q
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | E | N | L | S | K | R | W | D | L | W | R | K | I | V | T | S | D | L | E | I | V | N | I | L | E | R | S | P | E | S | F | F | R
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 136 | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions