BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (364 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria R... 473 e-132 UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteob... 374 e-102 UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cell... 352 2e-95 UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio... 343 7e-93 UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria Rep... 327 6e-88 UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=... 322 9e-87 UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum... 318 1e-85 UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobact... 315 2e-84 UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia R... 314 4e-84 UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia ... 306 1e-81 UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizob... 305 2e-81 UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerot... 304 3e-81 UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcale... 304 3e-81 UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacill... 304 3e-81 UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizo... 301 2e-80 UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular or... 301 3e-80 UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacill... 299 1e-79 UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus S... 299 1e-79 UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales ... 298 2e-79 UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerof... 296 1e-78 UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia R... 295 2e-78 UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworth... 294 3e-78 UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacill... 294 4e-78 UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria Re... 293 5e-78 UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaprot... 292 1e-77 UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria Rep... 292 1e-77 UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi ... 292 2e-77 UniRef50_A9N8L3 D-alanine--D-alanine ligase n=6 Tax=Coxiella bur... 291 2e-77 UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria Rep... 291 3e-77 UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycet... 287 3e-76 UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermoth... 285 2e-75 UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli Re... 284 4e-75 UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillu... 281 2e-74 UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine syn... 281 3e-74 UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci R... 280 4e-74 UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepI... 280 6e-74 UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales ... 280 7e-74 UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=... 276 9e-73 UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonel... 275 2e-72 UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria Re... 273 7e-72 UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces ... 273 8e-72 UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema Re... 271 2e-71 UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora ... 271 4e-71 UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacter... 268 2e-70 UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycet... 267 6e-70 UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiace... 266 1e-69 UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecali... 265 1e-69 UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 264 5e-69 UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID... 263 5e-69 UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN 263 8e-69 UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aerom... 260 5e-68 UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetal... 259 7e-68 UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bron... 259 1e-67 UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla ... 259 1e-67 UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobiu... 254 3e-66 UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium c... 254 4e-66 UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacte... 253 6e-66 UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella R... 253 7e-66 UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiale... 253 1e-65 UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachl... 252 2e-65 UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacte... 252 2e-65 UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospor... 251 2e-65 UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostri... 249 1e-64 UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiace... 249 1e-64 UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevib... 248 2e-64 UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium ... 247 5e-64 UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus... 246 6e-64 UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae Re... 246 7e-64 UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacter... 246 9e-64 UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacil... 244 3e-63 UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified E... 244 3e-63 UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pa... 243 6e-63 UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocyst... 243 6e-63 UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdema... 242 1e-62 UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacill... 241 2e-62 UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostoc... 240 5e-62 UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomona... 239 1e-61 UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococ... 237 6e-61 UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranu... 236 1e-60 UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax... 234 3e-60 UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein... 234 5e-60 UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus... 232 1e-59 UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes Re... 231 3e-59 UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaero... 228 2e-58 UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria Re... 225 2e-57 UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Rumin... 223 7e-57 UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 223 8e-57 UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 223 9e-57 UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 223 1e-56 UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bactero... 217 5e-55 UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coproco... 214 3e-54 UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia Re... 214 4e-54 UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 T... 214 4e-54 UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia m... 213 8e-54 UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothr... 212 1e-53 UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimo... 211 2e-53 UniRef50_B0MP08 Putative uncharacterized protein n=1 Tax=Eubacte... 210 7e-53 UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacte... 209 2e-52 UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilu... 207 7e-52 UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteob... 201 3e-50 UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 196 1e-48 UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus ... 194 3e-48 UniRef50_C0VTV5 D-alanyl-alanine synthetase A n=2 Tax=Corynebact... 194 3e-48 UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria Rep... 194 5e-48 UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacter... 187 7e-46 UniRef50_A4Y6E2 D-alanine--D-alanine ligase n=18 Tax=Shewanella ... 186 8e-46 UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermac... 186 1e-45 UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium Rep... 186 1e-45 UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas... 186 1e-45 UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 182 2e-44 UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus... 181 5e-44 UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine s... 180 7e-44 UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidami... 180 7e-44 UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria Re... 179 1e-43 UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria ... 178 3e-43 UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistip... 177 6e-43 UniRef50_D2MND8 D-ala D-ala ligase N-terminal domain protein n=2... 176 9e-43 UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma w... 176 9e-43 UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacte... 174 4e-42 UniRef50_B0MM64 Putative uncharacterized protein n=1 Tax=Eubacte... 173 1e-41 UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter s... 172 2e-41 UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 171 3e-41 UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2... 171 4e-41 UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteri... 169 1e-40 UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium... 169 1e-40 UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales... 169 2e-40 UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular o... 169 2e-40 UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromon... 168 2e-40 UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9... 167 5e-40 UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteri... 167 6e-40 UniRef50_Q821S4 D-alanine--D-alanine ligase n=15 Tax=Chlamydiace... 167 8e-40 UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collins... 166 8e-40 UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas... 165 2e-39 UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira R... 165 2e-39 UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella ... 164 3e-39 UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteo... 164 4e-39 UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacte... 163 8e-39 UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methyl... 163 9e-39 UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria Re... 162 1e-38 UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirill... 162 1e-38 UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=... 162 2e-38 UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Te... 162 2e-38 UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collins... 161 3e-38 UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium oc... 161 4e-38 UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacte... 160 5e-38 UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter ... 160 6e-38 UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis... 160 8e-38 UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabact... 160 1e-37 UniRef50_A1SMF1 D-alanine--D-alanine ligase n=1 Tax=Nocardioides... 159 2e-37 UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira b... 157 7e-37 UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales R... 157 8e-37 UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteo... 156 1e-36 UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobaci... 156 1e-36 UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae... 155 2e-36 UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteob... 154 4e-36 UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera ... 154 6e-36 UniRef50_Q5G7J6 Vancomycin resistance protein C1 (Fragment) n=1 ... 153 8e-36 UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=... 153 1e-35 UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteob... 153 1e-35 UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcu... 153 1e-35 UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacter... 152 1e-35 UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bactero... 152 2e-35 UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 152 2e-35 UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Ta... 152 3e-35 UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacter... 151 3e-35 UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteob... 151 4e-35 UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 150 8e-35 UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundu... 150 9e-35 UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsiea... 149 1e-34 UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4... 148 2e-34 UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivib... 148 3e-34 UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT 148 3e-34 UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n... 148 3e-34 UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes R... 148 4e-34 UniRef50_C0BG03 D-alanine--D-alanine ligase n=1 Tax=Flavobacteri... 147 5e-34 UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriac... 147 6e-34 UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteob... 147 8e-34 UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 147 8e-34 UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomona... 146 1e-33 UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular or... 146 1e-33 UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacter... 146 1e-33 UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aph... 146 1e-33 UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aph... 145 2e-33 UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibri... 145 2e-33 UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacte... 145 3e-33 UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga ole... 144 5e-33 UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp... 143 9e-33 UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira ... 142 2e-32 UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella... 142 2e-32 UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteri... 142 3e-32 UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriac... 141 3e-32 UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 141 4e-32 UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacil... 140 6e-32 UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacte... 140 6e-32 UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovi... 140 6e-32 UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteo... 140 6e-32 UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatron... 140 9e-32 UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes R... 139 1e-31 UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis v... 139 2e-31 UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidete... 139 2e-31 UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C... 139 2e-31 UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermob... 138 3e-31 UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetell... 138 3e-31 UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirill... 137 4e-31 UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ell... 137 9e-31 UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=... 135 2e-30 UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteob... 135 2e-30 UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas ... 135 3e-30 UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine syn... 135 3e-30 UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibr... 134 4e-30 UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrob... 134 6e-30 UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae... 134 6e-30 UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostri... 133 8e-30 UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clost... 133 9e-30 UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=D... 133 1e-29 UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrob... 133 1e-29 UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia ... 132 1e-29 UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfov... 132 2e-29 UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogace... 132 2e-29 UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q87... 132 2e-29 UniRef50_B8DLD4 D-alanine--D-alanine ligase n=1 Tax=Desulfovibri... 132 3e-29 UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidip... 131 3e-29 UniRef50_B3G438 D-alanyl-D-alanine ligase-like protein n=2 Tax=A... 131 4e-29 UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomyceta... 130 9e-29 UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicro... 130 1e-28 UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexi... 129 2e-28 UniRef50_C1RMD8 D-alanine--D-alanine ligase n=1 Tax=Cellulomonas... 128 3e-28 UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobact... 127 5e-28 UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified... 127 5e-28 UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine s... 127 8e-28 UniRef50_B9KHS3 D-alanine--D-alanine ligase n=5 Tax=Anaplasma ma... 126 1e-27 UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus P... 126 1e-27 UniRef50_A8Z6L3 D-alanine--D-alanine ligase n=45 Tax=Epsilonprot... 126 2e-27 UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacill... 125 3e-27 UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteo... 125 3e-27 UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces ... 125 3e-27 UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 125 4e-27 UniRef50_Q30R95 D-alanine--D-alanine ligase n=5 Tax=Campylobacte... 124 4e-27 UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Strep... 124 7e-27 UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma ce... 123 1e-26 UniRef50_D0RN14 D-alanine--D-alanine ligase B (D-alanylalanine s... 123 1e-26 UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomyceta... 122 2e-26 UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root Re... 121 4e-26 UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister in... 121 4e-26 UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteria... 120 7e-26 UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella... 120 8e-26 UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia Re... 117 4e-25 UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces... 117 8e-25 UniRef50_Q17XZ1 D-alanine--D-alanine ligase n=19 Tax=Campylobact... 117 9e-25 UniRef50_UPI0001C31F0B D-alanine--D-alanine ligase n=1 Tax=Conex... 117 9e-25 >UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria RepID=DDL_BAUCH Length = 375 Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust. Identities = 225/357 (63%), Positives = 282/357 (78%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVGI+FGG+SAEHEVSLQSAKNIV+ ID+++F+VVL GIDK+GQWH+++ NYL+ Sbjct: 1 MAKLRVGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIY 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ +IAL S +A +PG+ Q I + L +DVIFPIVHGTLGEDG+LQG+L Sbjct: 61 GENETYIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGEDGNLQGLL 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 R+ANLPFVGS VL SA MDKD+ KRLLRDA L + P ITLTR NR N S+ ++ + LG Sbjct: 121 RMANLPFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRENFSYDQIITYLGS 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 LFVKPANQGSSVGVSKV + + A+ LAF FD KV+VE I GRE+ECAVLGN +PQ Sbjct: 181 SLFVKPANQGSSVGVSKVINRISFDQALALAFCFDDKVLVESAINGRELECAVLGNHDPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS CGEIVL+ +FY+Y+ KY++E GA VVVPAAI+ E+++ I+ IAV+A+Q L C GMAR Sbjct: 241 ASLCGEIVLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 VDVFLT N+V++NE+NT PGFT+ISMYPKLWQASG+ Y LITRLIELA+ER+ A+ Sbjct: 301 VDVFLTTNNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIELAIERYYAE 357 >UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteobacteria RepID=DDL_BLOPB Length = 368 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/361 (51%), Positives = 253/361 (70%), Gaps = 10/361 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL +GI+ GG+S EHE+SL+SA I IDK RF+ ++L IDK+G WH+ D ++ Sbjct: 1 MSKLCIGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKD-----ID 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D ++ + L P + +N L DVIFP+VHGTLGEDG+LQG+L Sbjct: 56 FNDLSYHKDEKISILLQNCPYPFKFH---TKNINILLKFDVIFPVVHGTLGEDGALQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + NLPFVGS+VL+S+ MDKDV+K LLRDAGL++ PF T+ ++HNI F S GL Sbjct: 113 CMMNLPFVGSNVLSSSVGMDKDVSKCLLRDAGLSVVPFRTVLAQDQHNIDFDYFVSIFGL 172 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKP+NQGSS+GVSKVT + + +A+ AF F +K+++E I GRE+ECAVLGNDNP+ Sbjct: 173 PLFVKPSNQGSSIGVSKVTKCKDFNLALIKAFSFSNKILIEPAIIGRELECAVLGNDNPK 232 Query: 241 ASTCGEIVLT-SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 S CGE++L+ ++FY Y KY+ A++++PA I I+D IR IA++A+Q L C+GMA Sbjct: 233 ISVCGEVILSDNNFYTYHDKYVKRK-AQIMIPALINDAISDDIRHIALRAFQVLNCSGMA 291 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 RVDVFL +N++ INE+NTLPGFT SMYPKLW+ SGL +LIT+L+ELAL+ H N Sbjct: 292 RVDVFLNLDNKIFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELALDLHDKKNC 351 Query: 360 L 360 Sbjct: 352 F 352 >UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M114_BACS4 Length = 326 Score = 352 bits (902), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 162/327 (49%), Positives = 233/327 (71%), Gaps = 1/327 (0%) Query: 38 VVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP 97 +VL+GIDK G+W++ D +NYL N D+P I + PS + V G+H+ +G+ L Sbjct: 1 MVLIGIDKNGKWYLLDPNNYLRNMDNPKLIEMIPSDQRVNIVLGEHDC-FFTTPDGRSLG 59 Query: 98 TVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAP 157 +DVIFPI+HG+ GEDGS+QG+LR+ PF+G VL SA MDK+V+K+LL +AGL I Sbjct: 60 NIDVIFPILHGSYGEDGSIQGLLRLMGKPFIGPSVLGSAVSMDKEVSKKLLSEAGLFIGK 119 Query: 158 FITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHK 217 + T+ + NI + +V+ LG P+FVKPANQGSSVG+SKV ++++ +AVD AF +D+K Sbjct: 120 YFAYTKDRKGNIDYEKVKENLGTPVFVKPANQGSSVGISKVYEKKKFYMAVDEAFRYDNK 179 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 +++E+ IKGREIECAVLGN++P AS GE++ T FY+YD KYI+ G ++ VPA + + Sbjct: 180 IVIEEEIKGREIECAVLGNEDPIASLPGEVLFTDSFYSYDAKYINSGGVQLKVPAELDGD 239 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 +K++ A++A++ L C G+ARVD FLT E + +NEINTLPGFT +SMYPKLW+ SGL Sbjct: 240 DVEKVKKEAIKAFKALQCNGVARVDFFLTKEGNLFVNEINTLPGFTKLSMYPKLWEVSGL 299 Query: 338 GYTDLITRLIELALERHAADNALKTTM 364 Y DL+ ++I LA+E H + LK + Sbjct: 300 PYKDLVNKMIALAIESHKQEQRLKKNL 326 >UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio bacteriovorus RepID=DDL_BDEBA Length = 365 Score = 343 bits (879), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 170/373 (45%), Positives = 246/373 (65%), Gaps = 23/373 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K+ V ++FGGKSAEHEVSL+SAKN+ DA+DK +F VL+GI K+G W+ Sbjct: 3 MKKI-VALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTE 61 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPL---------PTVDVIFPIVHGTLG 111 A AL P K E + + G+P+ VDV FPI+HGT+G Sbjct: 62 ATKIVDSAL----------PSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMG 111 Query: 112 EDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF 171 EDG++QG+ ++ LPFVG V +SAA MDK++ KRLL A + A ++ LT +++ + Sbjct: 112 EDGTIQGLFKMVQLPFVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKND--Y 169 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 E+ +LG P F+KPAN GSSVGV K+ + E + + + AF+FD KV+ E+ I+GRE+EC Sbjct: 170 NEIVKELGSPFFIKPANAGSSVGVHKIKTAEDFVVKLKDAFQFDTKVLAEEFIQGREVEC 229 Query: 232 AVLG-NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +V+G N P+AS GE++ +FY+Y+ KYID++GA + +PA ++PE ++ +A Q Y Sbjct: 230 SVMGHNHAPKASLPGEVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTY 289 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 Q +GC G+ RVD F+ P E+ INEINT+PGFT ISMYPK+W+ASGL Y DLI++LI+L Sbjct: 290 QAMGCDGLTRVDFFIRPNGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQLG 349 Query: 351 LERHAADNALKTT 363 E+ + +LKT+ Sbjct: 350 FEKFEGEQSLKTS 362 >UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria RepID=C1F9Q0_ACIC5 Length = 400 Score = 327 bits (837), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 177/394 (44%), Positives = 245/394 (62%), Gaps = 42/394 (10%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+KLR+GI+FGG+S EHEVSL SA +I+ AID+ +++VV +GI KQG+W +DA+ LL Sbjct: 1 MKKLRIGILFGGRSGEHEVSLLSAASILKAIDRKKYEVVPIGITKQGRWVTADAAELLL- 59 Query: 61 ADDPAHIALRP----------------------------SATSLAQVPGKHEHQLIDAQN 92 A+ A RP A+ A VP + + + A + Sbjct: 60 ANGSAKAEPRPLRAGDPDTTPGAAVLAKGEAVIVPPVPQQASQGALVPFETQASTLTADS 119 Query: 93 GQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAG 152 + +D+IFP++HGT GEDG++QG+L +A + +VGS VL SA MDKD+ KRL A Sbjct: 120 ARQALQLDIIFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAK 179 Query: 153 LNIAPFITLTR----ANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 L I +T R N I+ ++E+ L P+FVKPAN GSSVG+SK ++ A+ Sbjct: 180 LPITKHVTFLRPEWEKNPRKIT-TQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAI 238 Query: 209 DLAFEFDHKVIVEQGI-----KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDE 263 +LA FD K++VEQG+ K RE+E AVLGN+ P+AS GEIV +FY Y+ KY+ E Sbjct: 239 ELAAGFDRKIVVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSE 298 Query: 264 DGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP--ENEVVINEINTLPG 321 G+ ++PA + + +IR +AV A++ CAG+ARVD + P + +NEINTLPG Sbjct: 299 -GSVPIIPAKLTKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPG 357 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 FT+ISMYPKLW+ASGL Y+ LI RLIELA ER A Sbjct: 358 FTSISMYPKLWEASGLPYSKLIDRLIELARERRA 391 >UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=DDL_CLOCE Length = 376 Score = 322 bits (826), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 171/364 (46%), Positives = 233/364 (64%), Gaps = 10/364 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K RV I+FGG+S+EHEVS SA+++++ IDK ++DV ++GI K GQW D + Sbjct: 1 MSKKRVAIIFGGQSSEHEVSRVSAQSVIENIDKQKYDVEIIGITKSGQWLKYDGPVEKIG 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP-----TVDVIFPIVHGTLGEDGS 115 D IA + SL+Q Q +P +DVIFP++HG GEDG+ Sbjct: 61 NGDWEAIAQKKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGT 120 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFA 172 +QG+ +A +P+VG VL SA MDK TK + GL ++ R NR A Sbjct: 121 IQGLFELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVA 180 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 ++E +L P FVKP+N GSSVGV+K + E A+++A + D +++VE+ I GREIECA Sbjct: 181 QIEGRLTYPCFVKPSNAGSSVGVNKASDRESLVKALNIAAKNDRRILVEEFINGREIECA 240 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAA-IAPEINDKIRAIAVQAYQ 291 VLGNDNP AST GE+V +DFY Y+ KY D +KVV+PA ++ E +KIR AV+A++ Sbjct: 241 VLGNDNPVASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSKETVEKIREYAVRAFK 300 Query: 292 TLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L CAG++RVD F+ E E+ INEINTLPGFT ISMYPKLW ASG+ Y++LI +LIELA Sbjct: 301 CLDCAGLSRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAASGIPYSELINKLIELA 360 Query: 351 LERH 354 ER+ Sbjct: 361 FERY 364 >UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCJ4_THET1 Length = 362 Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 159/364 (43%), Positives = 241/364 (66%), Gaps = 24/364 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M++ R+ ++FGG+SAEH+VS+ SA +++ A+ S D++ GI ++G W V + + +L Sbjct: 1 MKRYRLLLLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKML- 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP------LPTVDVIFPIVHGTLGEDG 114 S A G + + I + QP L VDV+FP++HG GEDG Sbjct: 60 -------------ASSALFAGDSDVRDIVPVDSQPRSVPEALSAVDVVFPLLHGPYGEDG 106 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---F 171 ++QG L + N+P+VGS VL S+ MDK K++ GL I ++ + R++ + Sbjct: 107 TVQGFLELVNVPYVGSGVLGSSLSMDKIAMKKMFESEGLPITRYLGILRSDWLSDPEGII 166 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 +++ES+L P+FVKPAN GSS+G++K A++LA ++D ++IVEQG++ RE+EC Sbjct: 167 SKIESELEYPVFVKPANLGSSIGITKAKDRSSLLQALELASKYDRRLIVEQGVEARELEC 226 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 AVLGND P+AS GEI+ +FY ++ KYI E +K ++PA I P ++D+IR AV+A++ Sbjct: 227 AVLGNDYPRASVVGEILPGDEFYTFEAKYISE-SSKTIIPADIPPSVSDEIRDYAVRAFK 285 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + AG+ARVD FLT EN+V++NEINT+PGFT ISMYPKLW+ASGL Y DL+ +L++LA+ Sbjct: 286 AVDAAGLARVDFFLTSENKVLVNEINTIPGFTPISMYPKLWEASGLSYPDLVRKLLDLAM 345 Query: 352 ERHA 355 ERHA Sbjct: 346 ERHA 349 >UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobacterium hafniense RepID=B8FWD5_DESHD Length = 361 Score = 315 bits (806), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 168/369 (45%), Positives = 232/369 (62%), Gaps = 15/369 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M + ++ I+FGG+S EHEVSL SA +++ AID+ ++++ +GI K GQWH Sbjct: 1 MTRQKIIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQW-- 58 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP---TVDVIFPIVHGTLGEDGSLQ 117 DPA L LA P +D G LP +IFP++HG GEDG++Q Sbjct: 59 QQDPA---LEGIPVILAHDPTNPRFIALD---GSSLPQDGKFALIFPVLHGPFGEDGTIQ 112 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEV 174 G+ +AN+P+ GS VL SA MDKD K + +AGL AP+IT+ R + Sbjct: 113 GLFEMANIPYAGSGVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNI 172 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E LG P FVKPAN GSSVG+SK + E+ A+ LA E+D K++VEQ I GREIE +VL Sbjct: 173 EHSLGYPCFVKPANLGSSVGISKARNREELIQALQLAAEYDRKLVVEQNIVGREIELSVL 232 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN++ QAS GEI+ DFY Y+ KYID G+++V+PA +APE+ ++ AV A++ + Sbjct: 233 GNEDAQASIPGEILPAKDFYDYEAKYID-TGSQLVIPAPLAPEVVRSLQEKAVAAFKAVE 291 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G++RVD F+T ++ INEINT+PGFT ISMYPKLW+ASG+ YT+LITRLIEL +R Sbjct: 292 ACGLSRVDFFVTEGGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIELGFQRF 351 Query: 355 AADNALKTT 363 + K + Sbjct: 352 RDSRSRKIS 360 >UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia RepID=DDL_NATTJ Length = 365 Score = 314 bits (804), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 162/359 (45%), Positives = 238/359 (66%), Gaps = 12/359 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+KLRVG++FGG+S EHEVSL+SA +I++A+D+ F+V+ +GI K G+W +A L Sbjct: 1 MKKLRVGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAP---LE 57 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + A S+ P K +D + + +D+IFP++HGT GEDG++QG L Sbjct: 58 ELETGIKNQGNYAVSILPDPSKKVLWKLDP--FEKISEIDLIFPVLHGTFGEDGTVQGFL 115 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA----NRHNISFAEVES 176 + +P+VGS VL S+ MDK + K++LR GL +A + + R+ +R I F+ +E Sbjct: 116 DLCGIPYVGSGVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFS-IEK 174 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 +L P+FVKPAN GSSVG+SKV + E+ +DLA ++D K + E+ I G+EIE ++LGN Sbjct: 175 QLSYPIFVKPANLGSSVGISKVKNREELIQGIDLAVKYDMKCLAEEFIPGKEIELSILGN 234 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 DNP+ S GEI+ ++FY Y+ KYI+ + +K+V+PA ++ + KI + V+A++ L C Sbjct: 235 DNPKTSVPGEIIPANEFYDYNAKYIN-NKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCY 293 Query: 297 GMARVDVF-LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G++RVD F L + EV INEINT+PGFT ISMYPKLW SGL Y+ L+T LI LAL R Sbjct: 294 GLSRVDYFVLEDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLLTDLIYLALARQ 352 >UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia RepID=DDL_THEP3 Length = 359 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 151/357 (42%), Positives = 239/357 (66%), Gaps = 8/357 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEK ++ ++FGG+S EHEVSL SAK+I++ +DK ++++ ++GI K+G+W++ + Sbjct: 1 MEKKKIAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + + + G + D +NG +DV+FP++HG GEDG++QG+L Sbjct: 61 TGEWEKEGIPAIMGASTKYRGIITFE--DGENG--FYPIDVVFPVLHGPNGEDGTIQGLL 116 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE-SKLG 179 + ++P+VG++VL+SA CMDK TKR+ ++AGL F+ + ++ + + LG Sbjct: 117 ELLDMPYVGANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIEDLEAIKKKIEHLG 176 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P FVKPAN GSSVG++KV +EE+ A+ LA ++D K+++E+GI REIEC+VLGN+NP Sbjct: 177 YPCFVKPANLGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENP 236 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GEIV +++FY Y+ KY D + +++PA + E +++R +A++AY+ L GMA Sbjct: 237 EASIAGEIVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMA 296 Query: 300 RVDVFLTPEN--EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 RVD FL N + +NE+NT+PGFT ISMYPKLW++SG Y+ L+ LI LA+E H Sbjct: 297 RVD-FLMDRNTGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLLDELINLAVESH 352 >UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizobium RepID=DDLA_RHILO Length = 357 Score = 305 bits (780), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 160/359 (44%), Positives = 228/359 (63%), Gaps = 9/359 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK RV I++GG+SAEH+VS SA N++ AID++R++VV + I + G+W + +S Sbjct: 3 EKTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSE---AG 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A + +A +PG + +NG+ VDV+FP++HG GEDGS+QG Sbjct: 60 ADGAGAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAE 119 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 VA++ +VG +LASAA MDKDV KRLLR+AGL +A +T+ + + SF E+ LGLP Sbjct: 120 VADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDVG--SFQEIAGALGLP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNP 239 F KPA QGSS GVSKV + + AV+ A +D K ++E+ + GREIEC+VL + + Sbjct: 178 FFAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSL 237 Query: 240 QASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEI+ FY Y+ KY D +GA V VPA + ++ + +A +A++ LGC Sbjct: 238 TVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEA 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 MARVD FL + +++NE+NTLPGFT+ISMY K A+G+GY+ +I LIE AL RH A Sbjct: 298 MARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALARHRA 356 >UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG04_9FIRM Length = 357 Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 170/365 (46%), Positives = 229/365 (62%), Gaps = 22/365 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDAS----- 55 M K V ++FG S+E+EVSL+SA +++ I + R+DVV+LGI K G+W S Sbjct: 1 MGKKTVAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIE 60 Query: 56 --NYLLNAD-DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGE 112 +L N PA I+ A + ++ L D QP+ VD +FP++HG E Sbjct: 61 SDRWLQNGPVTPAFISPDRGAGGILRL-------LPDGP--QPV-AVDAVFPVLHGEHSE 110 Query: 113 DGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA 172 DG++QG+L +A L +VG VLASAACMDK VT +L AG+ + P+ LTR + Sbjct: 111 DGAIQGLLEMAGLAYVGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGALAHFDET 170 Query: 173 E--VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 E + +K G P+F+KPAN GSSVGV K A+ AF FD KVI E + G E+E Sbjct: 171 ERMLAAKHGYPMFIKPANTGSSVGVGKAKDAGGLCAALSEAFRFDRKVIAETAVVGDELE 230 Query: 231 CAVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 CAVLGN D +AS GEIV +FY Y KY+D D + +PA I+ E +++IR AV+A Sbjct: 231 CAVLGNFDRAEASCVGEIVPRHEFYDYSGKYLD-DSTDLYIPARISGEASERIRQTAVRA 289 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + +GC G++RVD FLT E VV+NEINTLPGFT+ISMYPKL++A GL Y +LI+RLIEL Sbjct: 290 FAAMGCTGLSRVDFFLTREGRVVLNEINTLPGFTSISMYPKLFEAVGLPYPELISRLIEL 349 Query: 350 ALERH 354 A E+H Sbjct: 350 AFEKH 354 >UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcales RepID=DDL_THEEB Length = 343 Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 167/366 (45%), Positives = 235/366 (64%), Gaps = 34/366 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASN 56 M +LRVG++FGG+S EHEVS+ SA I A + R++V+ + I+K G+W ++ Sbjct: 1 MGRLRVGLLFGGRSREHEVSVVSAAAIAQAFAAGDNGDRYEVIPIYIEKDGRWRHTE--- 57 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 P A +SL Q P ++D T+DV FPIVHG GEDG++ Sbjct: 58 ---RVGIPEGTA---PESSLWQFPA-----VVD--------TIDVWFPIVHGPNGEDGTI 98 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN------RHNIS 170 QG+L + P+VGS V ASA MDK + K + GL P++ L R++ R+N Sbjct: 99 QGLLELMQRPYVGSGVAASAIGMDKILMKTVFGAIGLPQVPYVALQRSDLWSDPCRYNHL 158 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 +E++LG P FVKPAN GSSVG+SK + +Q A+++A E D ++IVE G+ RE+E Sbjct: 159 CDRIETELGYPCFVKPANLGSSVGISKAKNRQQLTTALEVAAELDRRIIVEAGVVARELE 218 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 CAVLGND PQAS GEI +S+FY Y+TKY D A++ +PA I P ++++IR++++QA+ Sbjct: 219 CAVLGNDKPQASVVGEITYSSEFYDYETKYTDGR-AQLHIPAEIPPAVSEQIRSLSLQAF 277 Query: 291 QTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 Q LG AG+AR D F P EV+INE+NTLPGFT +SMYP+LW ASGL + +L+ RL++L Sbjct: 278 QALGAAGLARFDFFYVPSTGEVLINEVNTLPGFTALSMYPQLWAASGLSFPELVHRLVQL 337 Query: 350 ALERHA 355 ALE HA Sbjct: 338 ALEWHA 343 >UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacillus RepID=DDL_LACGA Length = 361 Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 162/363 (44%), Positives = 235/363 (64%), Gaps = 25/363 (6%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K++VG++FGG S+E+EVS+ SA NI + ID ++FDV + I G YL N Sbjct: 3 DKIKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDG---------YLAND 53 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPL---PTVDVIFPIVHGTLGEDGSLQG 118 D + P ++ + H++ + N L P +DV FPIVHG LGEDG LQG Sbjct: 54 ADSRKVLDNP------KMEVANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQG 107 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR-----ANRHNISFAE 173 + RV + PFVG DVLA+A MDK++TK L + AG+ +A +I + R + + + + Sbjct: 108 LFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEY 167 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 V S+LG LFVKP+NQGSSVGVS VT+E++Y +A+ AF++D KV+VE+ + G E+E AV Sbjct: 168 VASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAV 227 Query: 234 LGNDNPQASTCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 LGND P + G+I+ D FY Y+ KY D + + +PA + I +K+R A++ +Q Sbjct: 228 LGNDKPIVAGVGQIINAKDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQA 287 Query: 293 LGCAGMARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 C+G+AR+D L T + EVV+ E+N LPGFTNISMYPKL++ G+ YTDLIT+LI+ A+ Sbjct: 288 TECSGLARIDSMLRTEDKEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYAM 347 Query: 352 ERH 354 ER+ Sbjct: 348 ERY 350 >UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizobium japonicum RepID=DDLA_BRAJA Length = 373 Score = 301 bits (771), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 240/372 (64%), Gaps = 18/372 (4%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K+RV +++GG+S EHEVSL+SA ++ +D++RF+V+ + IDK G+W +D L + Sbjct: 3 DKIRVVVLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWND-----LRS 57 Query: 62 DDPAHIALRP-----SATSLAQVPGKHEHQLIDAQNGQPLP-TVDVIFPIVHGTLGEDGS 115 D AH A P LA+ P L+ G P +DV+FP++HG L EDG+ Sbjct: 58 LDQAHAAALPILPDAPEMRLARGP-DGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGT 116 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFA 172 +QG+L +A++ +VGS VLASA MDKDV KRL AG+ +AP+ LTR S A Sbjct: 117 VQGLLELADVAYVGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLA 176 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 + L LP+FVKP N GSSVG+ KV +++ A+D AF +D KV+V+QGI REIE A Sbjct: 177 KAVEGLSLPVFVKPCNMGSSVGIHKVKTQDALEAALDDAFRYDVKVLVQQGIDAREIEVA 236 Query: 233 VLGNDNPQASTCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 VL ++ AS E+ + +FY+Y+ KY+D DGA+V +PA + +++R++A + + Sbjct: 237 VLEDETLFASLASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVF 296 Query: 291 QTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 L C+G ARVD FL + E NEINTLPGFT+ISMYPK+ +ASG+ Y +L++RL++L Sbjct: 297 AALECSGFARVDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVDL 356 Query: 350 ALERHAADNALK 361 AL+RH +L+ Sbjct: 357 ALDRHRQRQSLE 368 >UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular organisms RepID=DDL_ANAVT Length = 367 Score = 301 bits (771), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 167/367 (45%), Positives = 230/367 (62%), Gaps = 17/367 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASN 56 M KLRVG++FGG+S EHEVS+ SA+ I A+ + S+++++ I K G+W +A Sbjct: 1 MSKLRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQ 60 Query: 57 YLLNADDPAHIALRPSATSLA--QVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDG 114 +L + P L S +S A + + L Q+ + VDV FPI+HG GEDG Sbjct: 61 QVLKSGAPL---LESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDG 117 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFA 172 ++QG+L + PFVGS VL SA MDK K AGL + +TRA + F Sbjct: 118 TIQGLLTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFP 177 Query: 173 ----EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGRE 228 E+E+ LG P FVKPAN GSSVG+SKV S ++ A+D A +D ++IVE G+ RE Sbjct: 178 KLCDEIEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIVEAGVVARE 237 Query: 229 IECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQ 288 +ECAVLGND PQAST GEI SDFY Y+TKY A +++PA I EI+ +I+ +A+Q Sbjct: 238 VECAVLGNDQPQASTVGEITFNSDFYDYETKYT-AGKADLLIPAVIPDEISRQIQDMALQ 296 Query: 289 AYQTLGCAGMARVDVF-LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 A+ + AG+ARVD F + EV+INEINTLPGFT SMYP+LW SG+ + +L+ +L+ Sbjct: 297 AFAAVDAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLV 356 Query: 348 ELALERH 354 +LA+ERH Sbjct: 357 QLAIERH 363 >UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacillus RepID=DDL_LACDA Length = 362 Score = 299 bits (766), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 166/367 (45%), Positives = 238/367 (64%), Gaps = 20/367 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K +VG++FGG S+E+EVS+ SA NI AIDK +FDV + I G + S+A +Y + Sbjct: 3 KKTQVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSG-YVASEADSYKV-L 60 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++P ++ + T+ + LI+ + P +DV+FPIVHG LGEDG LQG+ R Sbjct: 61 EEPGYMVEKNDKTA-------NLSNLIELAS---RPELDVLFPIVHGNLGEDGVLQGLFR 110 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR-----ANRHNISFAEVES 176 + + PFVG DVLA+A MDK+ TK L + AG+ +A ++++ R A +S+ V Sbjct: 111 LIDKPFVGVDVLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSG 170 Query: 177 KLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 +LG LFVKP+NQGSSVG++ VT + YA A+ AF++D KV+VE+GI G E+E AVLG Sbjct: 171 QLGTSNLFVKPSNQGSSVGITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLG 230 Query: 236 NDNPQASTCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 ND+P S G+I+ + +Y+Y+ KY E + +PA I E +K++ A++ YQ Sbjct: 231 NDHPVVSGVGQIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITE 290 Query: 295 CAGMARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C+GMARVD L + EV+ NE+N LPGFTNISMYPKL++ +G+ Y DLITRLI LA ER Sbjct: 291 CSGMARVDSMLRESDGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLAEER 350 Query: 354 HAADNAL 360 +A L Sbjct: 351 YAHKKTL 357 >UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=DDL_SOLUE Length = 325 Score = 299 bits (766), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 152/353 (43%), Positives = 225/353 (63%), Gaps = 40/353 (11%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KLRV +++GG++ EHEVS++SAK+I+ +D +++ + ID+ G+W Sbjct: 2 KLRVAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKW------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 S + PG H + +DV+FP++HGT GEDG++QG+L + Sbjct: 49 ---------SPGPILPEPGAHAN-------------IDVVFPVLHGTFGEDGTVQGLLEL 86 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A+LP+VG+ VL SA MDK++ KR+ ++ L I ++T+TR S + +L P+ Sbjct: 87 ADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIVDYVTVTR---QTPSIVDACRRLPFPM 143 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 FVKPAN GSSVG+SK E++ A LA ++D K+IVE+GI+GRE+EC+VLGN+ P AS Sbjct: 144 FVKPANLGSSVGISKAHDEQELEAAFSLAKQYDRKIIVERGIEGRELECSVLGNEAPMAS 203 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ + +FY Y+ KY+ D A+ VPA + E D+IR +AV+ Y+ + C GMARVD Sbjct: 204 LPCEILPSREFYDYEDKYL-LDMARTQVPADLPGERTDEIRRLAVECYRAVECEGMARVD 262 Query: 303 VFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 FL N + INEINT+PGFT+ISMYPK+W+ SG+ + L+ +LIE AL+RH Sbjct: 263 FFLEHGTNRLYINEINTIPGFTSISMYPKMWEHSGIPFCTLLDQLIEFALDRH 315 >UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales RepID=DDL_STAA1 Length = 356 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 153/358 (42%), Positives = 227/358 (63%), Gaps = 17/358 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + IVFGGKSAEHEVS+ +A+N+++AIDK ++ V ++ I G W + + Sbjct: 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + D H+ A ++Q+ L ++ +GQP D +FP++HG GEDG++QG+ Sbjct: 61 STDELHLE-NGEALEISQL-------LKESSSGQPY---DAVFPLLHGPNGEDGTIQGLF 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN----RHNISFAEVES 176 V ++P+VG+ VL++A+ MDK V K+L GL P+I+ R+ HNI V Sbjct: 110 EVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNI-LKLVND 168 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 KL P+FVKPAN GSSVG+SK +E + + AF+FD K+++EQG+ REIE AVLGN Sbjct: 169 KLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGN 228 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D P+A+ GE+V FY Y +KY D ++ +PA + ++ +R +A++A++ C+ Sbjct: 229 DYPEATWPGEVVKDVAFYDYKSKYKD-GKVQLQIPADLDEDVQLTLRNMALEAFKATDCS 287 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G+ R D F+T +N++ INE N +PGFT SMYPKLW+ GL Y +LIT+LIELA ERH Sbjct: 288 GLVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERH 345 >UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAT5_9FIRM Length = 358 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 150/365 (41%), Positives = 229/365 (62%), Gaps = 19/365 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK VG+VFGGKS E++VSL SA N+++ I+K +FD+ ++GI +G++++ + Sbjct: 3 EKKNVGVVFGGKSGEYDVSLLSAYNVINGINKEKFDITMIGITLEGKFYIYKGDVEKIKT 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++ + S ++ + L D G + VD+IFP++HG GEDG +QG+ Sbjct: 63 NE----WINDSKNLIS------DFSLFD---GDIINNVDIIFPVLHGQNGEDGRIQGLFE 109 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE-----VES 176 + + P+VG +VLAS+ CMDKD+ KR+ R G+ + + + + E E Sbjct: 110 MMDKPYVGCEVLASSVCMDKDIAKRIFRSVGIPVVDDVLVFNTDIETDKLLEATLDRCEE 169 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L P+FVKP N GSSVG+SK + A+ A +FD K++VE+GI REIE AVLGN Sbjct: 170 NLPYPMFVKPVNMGSSVGISKAKDRDSLKEALLKAVKFDTKILVEKGINAREIEVAVLGN 229 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 +P+AS GEIV +FY Y+ KY+ DG+++ +PA I +I +KIR AV+A++ +G + Sbjct: 230 SHPEASYPGEIVSCKEFYDYEAKYLSGDGSRIDIPAKIDDKIIEKIRTYAVKAFKAVGGS 289 Query: 297 GMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G++RVD FL ++ ++ +NE NTLPGFTNISMY K+W G+GY+DLI +LI+L ER+ Sbjct: 290 GLSRVDFFLDKDSKDIYLNEANTLPGFTNISMYAKMWDYMGIGYSDLIEKLIDLGFERYE 349 Query: 356 ADNAL 360 + L Sbjct: 350 IKHRL 354 >UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia RepID=DDL_CALS8 Length = 364 Score = 295 bits (754), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 236/371 (63%), Gaps = 18/371 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL+V ++FGG S EHEVS+ SAK+++ +DK +++++ +GI K+G+W + L+ Sbjct: 1 MTKLKVAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLD 60 Query: 61 ADDPAH---IALRPSATSLAQVPGK-HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 + + + P T A V K E ID +DV+FP++HG GEDG++ Sbjct: 61 SKWTMYSIECFISPDRTKKALVKIKDSEATFID---------IDVVFPVLHGLNGEDGTV 111 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAE 173 QG+L ++ +P+VG VL+SA CMDK K+L G+ F+ + + ++ Sbjct: 112 QGLLELSGIPYVGCGVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRR 171 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 +ES+ P+FVKPAN GSSVG+SK +++ +A+ AF +D K+++EQ I REIECAV Sbjct: 172 IESEFSYPVFVKPANSGSSVGISKAKDKDELILAIHEAFLYDTKILIEQAINAREIECAV 231 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 LGN S GEIV + +FY+Y+ KYID +++++PA + ++ D+I+ +AV+ Y+ Sbjct: 232 LGNSEILVSALGEIVPSREFYSYEAKYID-GSSELIIPAKLEKQVEDEIKELAVKIYKLF 290 Query: 294 GCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 C+GMAR+D F+ E N+V NE+NT+PGFT+ISMYPKL + SG+ Y L+ +LI+LA+E Sbjct: 291 ECSGMARIDFFVDKETNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLAIE 350 Query: 353 RHAADNALKTT 363 ++ ++K + Sbjct: 351 KNQQKQSIKYS 361 >UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=DDL_WIGBR Length = 350 Score = 294 bits (753), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 150/351 (42%), Positives = 230/351 (65%), Gaps = 3/351 (0%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K V ++FGG+S EHE+SLQS+ +I++AIDK +++++L+G++K G+ + +NY+L Sbjct: 2 KKTVAVLFGGESKEHEISLQSSISIINAIDKKKYNIILIGVEKNGKIGIRSINNYILFKY 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + +I L P+ + L +PGK+ +Q +N + L +DVIF I+HG+ GE+G+ QG+ Sbjct: 62 NINYIKLAPAVSYLYIIPGKNNYQFYSLKNKKMLK-IDVIFSILHGSNGENGAFQGLFNT 120 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 PFVGS+VL+S+ CMDKD++KR+L G+++ P ITL N ++ + + P Sbjct: 121 IYTPFVGSNVLSSSICMDKDISKRILSTFGISVVPSITLYYENYKKKI-NKIINNIKFPC 179 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP+NQGSS GV+ ++D+AF + K+++E I+GREIE VLGN N +S Sbjct: 180 CIKPSNQGSSFGVNVANDFISLKESIDVAFLYSKKILIEPFIQGREIEVGVLGNRNVISS 239 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 CGEI FY Y KYI + K+++PA I+ EI++KI+ IA A+ +L C+ MARVD Sbjct: 240 VCGEIKFKKIFYDYKEKYISKK-TKIIIPAKISNEISNKIKKIAKLAFISLECSIMARVD 298 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 FLT ++ +NEINT+PGFT S+YPKLW SGL + LI +LI L + + Sbjct: 299 FFLTKNKKIFLNEINTIPGFTKNSIYPKLWSKSGLDFKSLINKLILLTIYK 349 >UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacillales RepID=DDL_LACRD Length = 378 Score = 294 bits (752), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 147/363 (40%), Positives = 231/363 (63%), Gaps = 9/363 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL + ++FGG S+EH+VS +SA NI DA+DK ++DV L K G ++ S + + Sbjct: 3 QKLHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDG 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + A + ++ I A N Q +D FP++HG LGEDG++QG+ + Sbjct: 63 EPEDQVV----AEAYQKMDMSSPLAPIMALNEQK--EIDFFFPVIHGNLGEDGTIQGLFK 116 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + N P+VGS++ ASA DKD+TK+++ AG+ P++ +T N+ + S+ +E KLG Sbjct: 117 LLNKPYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNL 176 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQ 240 FVKPA QGSSVG+ +VT+ E+Y A+D AF++D+K++VEQGI +EIE ++LGN++P Sbjct: 177 TFVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPI 236 Query: 241 ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 AS G + + D FY Y+ K++D G +P + + D+I +A++AY+ LG GM Sbjct: 237 ASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGM 296 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 AR+D + N + E NTLPGFTNIS+YP++W+ SG+ Y+DLI RLI+L L+ ++ Sbjct: 297 ARIDFLVDSNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQLGLQEFERNS 356 Query: 359 ALK 361 +K Sbjct: 357 KIK 359 >UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria RepID=DDL_CLOTH Length = 376 Score = 293 bits (751), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 156/366 (42%), Positives = 231/366 (63%), Gaps = 14/366 (3%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K RV ++FGG+S+EHEVS SA +I+ I+ +FDV ++GI K G+W D + + Sbjct: 3 DKKRVLVIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPS 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEH---------QLIDAQNGQPLPTVDVIFPIVHGTLGE 112 + IAL+ S+A ++ L A + +DV+FP++HG GE Sbjct: 63 GEWEEIALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGE 122 Query: 113 DGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS-- 170 DG++QG+ +A +P+VG VLASA MDK K + AG+ A ++ TR + Sbjct: 123 DGTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEG 182 Query: 171 -FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 ++E K P+FVKP+N GSSVGVSK + + A+ A +D KV++E+ I GRE+ Sbjct: 183 VVDKIEEKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAARYDRKVLIEEFINGREV 242 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 ECAVLGND+P AST GEI+ ++FY Y KYI E+ +K+ +PA + E ++IR AV+A Sbjct: 243 ECAVLGNDDPVASTVGEIIPGNEFYDYKAKYI-ENTSKIKIPADLPEETVEQIRNYAVKA 301 Query: 290 YQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 ++ L C+G+ARVD F+ E +V INEINT+PGFT+ISMYP LW+ SG+ Y +LI +LI+ Sbjct: 302 FKALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLID 361 Query: 349 LALERH 354 LA++R+ Sbjct: 362 LAVQRY 367 >UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaproteobacteria RepID=DDLA_BRUME Length = 353 Score = 292 bits (748), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 151/357 (42%), Positives = 229/357 (64%), Gaps = 16/357 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+R+ ++FGG+SAEH+VS+ SA N+++A+D ++++ V + + + GQW +S N L + Sbjct: 5 KMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGAL--E 62 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT--VDVIFPIVHGTLGEDGSLQGML 120 P+ S L VPG ++ G P +D+IFP++HG GEDG++QG+ Sbjct: 63 KPS------SGAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLA 116 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +VA +P G + SA +DKD+ KRL+ +AGL+ A +T+TR +F+ +E LGL Sbjct: 117 QVARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITR--EEVPAFSALEQALGL 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KPA QGSSVGV KV +E Y A+ F +D K++ E+ I+ RE+EC VL ++ Sbjct: 175 PIFIKPARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGA 234 Query: 241 --ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEIV FY+YD KYID DG ++ VPA + ++ ++IRAIA +A++ LGC Sbjct: 235 LFVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCD 294 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 MARVD F+T + +V+NEINT+PGFT++SMY K+ SG+ Y ++I RL+ L R Sbjct: 295 SMARVDFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 351 >UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria RepID=DDL_CHLT3 Length = 366 Score = 292 bits (748), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 160/371 (43%), Positives = 233/371 (62%), Gaps = 28/371 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K +V ++FGG+S+EHE+S+ SA++I +A+DK+++ + + I K G+W ++AS +L Sbjct: 1 MNKKKVALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILA 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLID------AQNGQ-----PLPTVDVIFPIVHGT 109 D + I + P K E LI+ QN Q +DV FP++HG Sbjct: 61 MDFESAI----------KSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGP 110 Query: 110 LGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR----AN 165 GEDG++QG+L + ++ +VGS VLASA MDK V K AGL + ++ R N Sbjct: 111 YGEDGTVQGLLEMFDVAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEEN 170 Query: 166 RHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK 225 R ++ A E KL P+FVKPAN GSSVG+SK + + A++LA +D K ++E+ I Sbjct: 171 RGSV-VARAEKKLRYPMFVKPANMGSSVGISKAHNRNELIEAIELALAYDRKFLIEKAIN 229 Query: 226 GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 RE+E AVLGND P AS GE+V ++FY YD KY+ + ++V++PA I+ K++A Sbjct: 230 AREMEVAVLGNDEPIASAVGEVVPCNEFYDYDAKYV-KGSSEVIIPAQISEAFAGKLKAA 288 Query: 286 AVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 A+ A+ C GMARVD + E NE+ INEIN++PGFT+ISMYPKL+ G+ YT+LI Sbjct: 289 ALNAFVAADCEGMARVDFLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELIN 348 Query: 345 RLIELALERHA 355 RLIELALER++ Sbjct: 349 RLIELALERYS 359 >UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi (class) RepID=DDL_HERA2 Length = 361 Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 157/367 (42%), Positives = 230/367 (62%), Gaps = 24/367 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K RVGIVFGGKS EHEVSL+SA+ +++A+D ++ V+ +GI + GQW L+ Sbjct: 1 MTKRRVGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRNGQW---------LS 51 Query: 61 ADDPAHIALRPSATS--LAQVPGK---HEHQLIDAQNGQPLPT----VDVIFPIVHGTLG 111 DP +AL A L + P E ++ + P T +DVI P++HG G Sbjct: 52 GGDPL-LALEQQADQKMLGRTPQAGVVSETAIVQSAGSLPEQTNVAALDVIIPVLHGPFG 110 Query: 112 EDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN--- 168 EDG++QG+ ANLP+VG VLA++ MDK + K AGL P+ + R + Sbjct: 111 EDGTIQGVFEFANLPYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPE 170 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGRE 228 + +E+ L P+FVKPAN GSSVG+SKV++ + A + A +D +++VEQGI RE Sbjct: 171 AVYERLEATLHYPMFVKPANLGSSVGISKVSNRAELATGMAEAAGYDRRIVVEQGINARE 230 Query: 229 IECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQ 288 IE A+LGND+P+ S GE++ +DFY Y KY+ E + +PA + ++++R +AV Sbjct: 231 IEVAILGNDDPKPSVPGEVLPANDFYDYADKYL-EGQTQFAIPAELDAATSEQLREMAVT 289 Query: 289 AYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 A++ + AG+ARVD F+ E + INEINT PGFT +S YPKLW+A+GLGY++L+ RLI Sbjct: 290 AFKAIDGAGLARVDFFVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELLDRLI 349 Query: 348 ELALERH 354 +LA+ER+ Sbjct: 350 DLAIERY 356 >UniRef50_A9N8L3 D-alanine--D-alanine ligase n=6 Tax=Coxiella burnetii RepID=DDL_COXBR Length = 372 Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 153/360 (42%), Positives = 230/360 (63%), Gaps = 2/360 (0%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EKL + ++ GG+S EHE+S+QSAKNIV+ +D +++ + ++ I G+W++ D L A Sbjct: 3 EKLHISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIVHVGRWYLIDQPEMFL-A 61 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 P H+ SA + G + D +FP+VHGT GEDG+LQG+L Sbjct: 62 HSPDHLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLE 121 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + NLP+VG++V +SA CM+KD+TK +LR G+ + + TL+ + + + + G Sbjct: 122 LLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTS 181 Query: 182 -LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 LFVK + GSSV V +E ++ AV F +D +++VE I+GREIECAVLGN P+ Sbjct: 182 ELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIRGREIECAVLGNGAPK 241 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS GEI+ D+Y+YD KY+D +GA ++ + +I+ IA+ A++ + C+GMAR Sbjct: 242 ASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMAR 301 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VD F+TP N+V++NEINT+PGFTNISMYPK+W+ASGL +L+ +LIELA++RH L Sbjct: 302 VDFFVTPNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELAIDRHQEQQKL 361 >UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria RepID=DDL_HELMI Length = 366 Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 162/362 (44%), Positives = 229/362 (63%), Gaps = 18/362 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + ++ GG+S EHEVSL SA++IVDA+D+ RF+V+ +GID+ G W + N Sbjct: 1 MMKQTIAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGS------N 54 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQ--NGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D +P + +P LI+ +P+P VDV FP++HG GEDG++QG Sbjct: 55 VIDNLRKGQQPYGQRVYFIPDPTCPGLIEENPVTRKPVP-VDVFFPVLHGPNGEDGTIQG 113 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS----FAEV 174 + AN+P+VG VLASA MDK + K L + L P++ + R NR + EV Sbjct: 114 LFEAANVPYVGCGVLASACGMDKAIMKALFAQSDLPQLPYLVVLR-NRWESAREQVIDEV 172 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E +LG P FVKPAN GSSVG+SK T+ + A D A +D K+IVE+GI REIE +VL Sbjct: 173 EDRLGYPCFVKPANMGSSVGISKATNRAELVAAFDDAVRYDRKLIVEKGINVREIEVSVL 232 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GND AS GEIV +FY YD KY D +++++PA IA + +A++A++ + Sbjct: 233 GNDEVVASVPGEIVPAHEFYDYDAKYAAAD-SRLLIPAPIAAADVATFQEMAIRAFRAID 291 Query: 295 CAGMARVDVFLTPEN--EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +G++RVD FL +N EV INEINTLPGFT+ISMYPKLW+A+G+ Y +L++RL++L L Sbjct: 292 GSGLSRVD-FLLDKNSGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVDLGLA 350 Query: 353 RH 354 R+ Sbjct: 351 RY 352 >UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycetales RepID=DDL_MYCUA Length = 373 Score = 287 bits (735), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 158/364 (43%), Positives = 234/364 (64%), Gaps = 16/364 (4%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 E+LRV +VFGG+S EH +S SA +I+ +D RF+V+ +GI QG W ++D + L Sbjct: 9 ERLRVAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAI 68 Query: 62 DDPAHIALRPSATSLAQVPG--KHEHQLID--AQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 D + + + +P + QL+ G+ L +VDV+FP++HG GEDG++Q Sbjct: 69 TDRRLPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQ 128 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L +A +P+VG+ VLASAA MDK+ TK+L AGL I P L R +R ++ E++ + Sbjct: 129 GLLELAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVL-RPSRQSLDREELQ-R 186 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--G 235 LGLP +VKPA GSS+GVS+V+S ++ A+ A D KVIVE I GRE+EC VL Sbjct: 187 LGLPAYVKPARGGSSIGVSRVSSFDELPAAIAAARRHDPKVIVEAAINGRELECGVLEFP 246 Query: 236 NDNPQASTCGEIVLTS------DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 + +AST GEI + FY ++TKY+D D A++ VPA + ++ D +R +A++A Sbjct: 247 DGRLEASTLGEIRVAGVRGREDGFYDFETKYLD-DAAELDVPAKVEDDVADAVRQLAIRA 305 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 ++ + C G+ARVD FLT ++ VINE+NT+PGFT ISMYP++W ASG+ Y L+ ++E Sbjct: 306 FEAIDCQGLARVDFFLT-DDGPVINELNTMPGFTTISMYPRMWVASGVDYPTLLATMVET 364 Query: 350 ALER 353 AL R Sbjct: 365 ALSR 368 >UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermothrix orenii H 168 RepID=DDL_HALOH Length = 343 Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 148/355 (41%), Positives = 222/355 (62%), Gaps = 17/355 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLR+G++FGG+S EHEVS+ SA+++V K ++ V+ GI K+GQW + S +LN Sbjct: 1 MSKLRLGVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + +V + + ++ +D++FP++HG GEDG LQG L Sbjct: 61 -------------NGINEVKASKDRCITESVRVFLDHKLDIVFPVLHGPYGEDGKLQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESK 177 ++P++G+ VL+SAA MDK++ K L + A + + + N +E++ Sbjct: 108 DCLDIPYIGASVLSSAAGMDKEIMKNLFSYHKIPQARYRVYRQNHLENGLDGIISEIDRF 167 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 LG P FVKPAN GSS+GVSKV S + A++ F +D K+I E+ ++GREIEC+VLGND Sbjct: 168 LGWPCFVKPANMGSSIGVSKVHSPGEVKKALEKGFYYDRKLIFEEFVEGREIECSVLGND 227 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +AS GEI+ +FY Y+ KY D + ++V+PA++ + DK R +A++A++ + G Sbjct: 228 QVEASLPGEILPGKEFYDYEAKYKD-NKTRLVIPASLDESVIDKARNLAIKAFKAIDGNG 286 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 ARVD FL +++NEINT+PGFT SMYPKLW+A+GL Y DLI +LIELALE Sbjct: 287 FARVDFFLKNNGVLLVNEINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIELALE 341 >UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli RepID=DDL_LISW6 Length = 370 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 158/372 (42%), Positives = 232/372 (62%), Gaps = 15/372 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W LL Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEW----VQGPLLTGK 57 Query: 63 DPAHIALRPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 LR SAT+ ++ K E + I + V+FP++HG GEDG++QG Sbjct: 58 LDFVEQLRFSATNTVKLAATESEKSEGEAISPAVLEADDQETVVFPLLHGPNGEDGTVQG 117 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT---LTRANRHNISFAEVE 175 + V N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N +E+E Sbjct: 118 LFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVSEME 177 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK T++++ A+ AF +D +V+VEQG+ REIE VLG Sbjct: 178 EVLTYPVFVKPANLGSSVGISKATNKKELEDAMTEAFLYDRRVVVEQGVVAREIEMGVLG 237 Query: 236 NDNPQASTCGEIV---LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 ND P S GEI+ + FY Y KY D + A +++P + PEI ++++ AVQA+ Sbjct: 238 NDTPVCSVPGEILPEGAVATFYDYKAKYQDNNTA-LIIPTEVDPEILEQMKEYAVQAFLG 296 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L +G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y+ LI RL++LA E Sbjct: 297 LDASGLVRADFFLTDDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYSALIERLVDLAKE 356 Query: 353 RHAADNALKTTM 364 RHAA NALK + Sbjct: 357 RHAAKNALKYKL 368 >UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB62_BREBN Length = 375 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/364 (40%), Positives = 236/364 (64%), Gaps = 15/364 (4%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K+R+GI++GGKS+EHEVSL++A +I+ A+D ++++V + + G W + L Sbjct: 4 QKIRLGIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGET----LAG 59 Query: 62 DDPAHI-ALRPSA-TSLAQVPGKHEHQL-IDAQNGQPLPT---VDVIFPIVHGTLGEDGS 115 P I ALR SA T ++ + +L + +++G +DV+FP+VHG GEDG+ Sbjct: 60 QLPDKIEALRLSAKTPVSNEATETGQELAVTSKSGSLFAMNEQMDVVFPVVHGPFGEDGT 119 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FA 172 +QG+L +AN+P+VG+ V+ASA MDK + K + AGL ++ L R+ Sbjct: 120 IQGLLELANIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDDVMD 179 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 +E +LG P FVKPAN GSSVG++K + E+ A+D+A +FD ++IVE+ ++ RE+E Sbjct: 180 RIERELGYPCFVKPANMGSSVGINKAKNREELKHALDVAAKFDRRLIVEEFVQVRELEIG 239 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 VLGN+ S GE++ +FY Y+ KY G ++ +PA + ++++I IA QA+Q Sbjct: 240 VLGNEELMTSVVGEVIAAKEFYDYEAKY-KGAGTELSIPAIVPEHVSEQIAEIAKQAFQA 298 Query: 293 LGCAGMARVDVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L +G++RVD F +N+ + INE+NT+PGFT SMYP L+QA+G+GY++LI RL++LA+ Sbjct: 299 LDGSGLSRVDFFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVGYSELIDRLVQLAI 358 Query: 352 ERHA 355 ERHA Sbjct: 359 ERHA 362 >UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) n=1 Tax=Rickettsiella grylli RepID=A8PM76_9COXI Length = 365 Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 231/370 (62%), Gaps = 20/370 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V +++GG SAEHE+SL SA ++ +D+ +F ++ +GIDKQG+ V+ + L + D Sbjct: 8 KTKVAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQS-LYSGD 66 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 I L T AQ ++D + DV+FP++HG LGEDG++QG+L + Sbjct: 67 T---ILLE---TENAQSFSGLAELMVDKKG-----HYDVVFPVLHGALGEDGTIQGLLDL 115 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLG 179 ++ ++G+DVL SA MDK V+KRL A + + PF+ + ++ ++ ++G Sbjct: 116 MDIAYIGADVLGSAVGMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQEIG 175 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 PLF+KP N GSS+G++K+ + A++L F + KV+VE+ ++ RE+E AVL N Sbjct: 176 YPLFIKPVNGGSSLGITKIKKDTDLENAIELVFTYSTKVLVEKALEVREVEIAVLENQKW 235 Query: 239 ---PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 P S GEI+ +FY+Y+ KY+DE GA++++PA++ +I+ +A++ + L C Sbjct: 236 GAEPYVSQIGEIIPRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDC 295 Query: 296 AGMARVDVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +GMAR+D F+ ++ + NE+NT+PGFT ISMYP+LW+ SG+ YT L+T LIELAL RH Sbjct: 296 SGMARIDFFIEKRSQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELALTRH 355 Query: 355 AADNALKTTM 364 + LK + Sbjct: 356 QRLSLLKLSF 365 >UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci RepID=DDL_DEIGD Length = 339 Score = 280 bits (717), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 155/359 (43%), Positives = 227/359 (63%), Gaps = 28/359 (7%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K R+ ++ GG+S EHEVSL+SA++++ A+ + +FDV + I QG+W + L Sbjct: 2 KKRILLLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALETG 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + A+R L H+ A+ D +FP++HG +GEDG++QG+L + Sbjct: 62 E----AVRGGDLVL--------HRAASAEG------YDAVFPLLHGPMGEDGTIQGLLTL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGL-NIAPFITLTRANRHNISFAEVESK---L 178 A +PFVGS VL SA MDK +TK++L G+ +A + + R + EV ++ L Sbjct: 104 AGIPFVGSGVLGSAVSMDKVMTKQVLASVGMPQVAWRLAVRREWQERPQ--EVRARAGEL 161 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVE--QGIKGREIECAVLGN 236 G PLFVKPAN GSSVG+SKV+ + A+DLAF +VI+E K RE+E +LGN Sbjct: 162 GYPLFVKPANLGSSVGISKVSGPGELERALDLAFSLGRRVILEAMTAHKPRELEVGILGN 221 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D P AS GE+ +DFY Y+TKY E A + +PA + PEI +++R +A+ A++TL CA Sbjct: 222 DAPIASPVGELRFEADFYDYETKYT-EGRATMHIPAPLPPEIAERVRMLALTAFRTLDCA 280 Query: 297 GMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G+ARVD F + E+ +NE+NT+PGFT SMYPKL++A+GL Y++L+TRL+ELALER Sbjct: 281 GLARVDFFYVEQTGELFLNEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALERR 339 >UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepID=B9YQN3_ANAAZ Length = 394 Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 155/370 (41%), Positives = 223/370 (60%), Gaps = 35/370 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASN 56 M KLRVG++FGG+S EHEVS+ SA+ I +A+ + +++++ I K G W + + Sbjct: 44 MSKLRVGLLFGGRSGEHEVSIISARGIANALSAEENSHKYEIMPFYIQKDGFWQAGEVAQ 103 Query: 57 YLLNA----DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGE 112 +L + + P + A +L Q P + +D+ FPI+HG GE Sbjct: 104 QVLTSGVAKEHPGNRA------NLWQFPPQTAE-------------IDLWFPILHGPNGE 144 Query: 113 DGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNIS 170 DG++Q +L + +PFVGS VL SA MDK K AGL + LTRA + Sbjct: 145 DGTIQALLTLMQVPFVGSGVLGSATGMDKIAMKTAFAQAGLPQVKYKALTRAQIWSNPCV 204 Query: 171 FA----EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG 226 F E+E+ LG P FVKPAN GSSVG++KV S ++ A+D A +D ++IVE G+ Sbjct: 205 FPKLCDEIEATLGYPYFVKPANLGSSVGIAKVQSRQELEAALDNAATYDRRIIVEAGVVA 264 Query: 227 REIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 RE+ECAVLGNDNP+AS GEI SDFY Y+TKY + A + +PA + +I+ A Sbjct: 265 REVECAVLGNDNPKASVIGEITFDSDFYDYETKYT-QGKADLFIPAHLPESAVQQIQEKA 323 Query: 287 VQAYQTLGCAGMARVDVF-LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 +QA+ + AG+ARVD F + E++INEINTLPGFT+ SMYP+LW +G+ + L+ + Sbjct: 324 LQAFTAVDAAGLARVDFFYVEATGEILINEINTLPGFTSTSMYPQLWANTGISFPKLVDQ 383 Query: 346 LIELALERHA 355 LI+LA+ERH+ Sbjct: 384 LIQLAMERHS 393 >UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales RepID=DDL_METS4 Length = 382 Score = 280 bits (716), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 154/351 (43%), Positives = 220/351 (62%), Gaps = 17/351 (4%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNADDP 64 V ++FGG+SAEHEVS+ SA N+ A+D R+ V + IDK+ G W + L + P Sbjct: 5 VALLFGGRSAEHEVSIVSAGNVARALDPDRYAVTPIAIDKETGAWRLCPP---LAPGEAP 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 A + P +A +PG + + DV+ P++HG GEDG++QG L +A Sbjct: 62 AMVREGPR---VAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALDLAG 118 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE-VESKLGLPLF 183 +P+VGS V+ SAA MDKDV KRL+RDAGL I P+ L R +++ E VE+ LF Sbjct: 119 VPYVGSGVIGSAAAMDKDVAKRLMRDAGLPIVPY--LVAGPRRGVAYTEAVEALESRTLF 176 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECAVL--GNDNPQ 240 VKPAN GSSVGVS+V Q+ A+ AF +D K+++E+ + + REIE AVL + Sbjct: 177 VKPANMGSSVGVSRVADAGQFDQALAHAFAYDEKILIERAVPRAREIEFAVLETAEGEVR 236 Query: 241 ASTCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 S GEI + FY YD KY+D DGA +++PA++AP + +++ +A +A++ L CAG+ Sbjct: 237 VSPPGEIAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALACAGL 296 Query: 299 ARVDVFLTPENE--VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 ARVD+FL P++ + +NE+NTLPGFT ISMYPKLW A+GL L+ LI Sbjct: 297 ARVDLFLDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 347 >UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=D1BDJ8_SANKS Length = 400 Score = 276 bits (706), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 158/373 (42%), Positives = 222/373 (59%), Gaps = 31/373 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV ++FGG+S EH +S +A ++ AID+ R+DVV +GI + GQW +L D Sbjct: 34 RPRVVLLFGGRSGEHVISCATAAGVMRAIDRDRYDVVPVGITRTGQW--------VLVED 85 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP-------------LPTVDVIFPIVHGT 109 DP A+ + L +V L+ GQ L VDV+FP++HG Sbjct: 86 DPDRWAI--TDGRLPEVDATGTEVLLPLAVGQTALRVLEAGALPRVLGDVDVVFPLLHGP 143 Query: 110 LGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA--NRH 167 GEDG+LQGML +A++ +VG+ VLASA MDK K +L GL + P+ + +R Sbjct: 144 FGEDGTLQGMLELADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVVPPGEWDRD 203 Query: 168 NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGR 227 + + LGLP+FVKPA GSS+G+SKV AV A D KVIVE GI GR Sbjct: 204 AEAVTARVAGLGLPVFVKPARAGSSLGISKVDDLADLPAAVAEARRHDPKVIVEAGIVGR 263 Query: 228 EIECAVLGN---DNPQASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDK 281 EIECAVLG + +AS GEI +T FY ++ KY+ E ++ PA ++PE+ + Sbjct: 264 EIECAVLGGRRGERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELTCPADLSPELVAE 323 Query: 282 IRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTD 341 ++ +AV+ ++ + G++RVDVF+T EVV+NEINT+PGFT SMYP++W SGL Y + Sbjct: 324 VQDVAVRTFEAVSGEGLSRVDVFVTEAGEVVVNEINTMPGFTPFSMYPRMWDRSGLPYAE 383 Query: 342 LITRLIELALERH 354 LIT L+ELALER Sbjct: 384 LITELVELALERE 396 >UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUR2_9FIRM Length = 367 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 222/374 (59%), Gaps = 24/374 (6%) Query: 1 MEKLRVGIV--FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW--------H 50 ME+L + IV +GG+SAEH++SL SA NI+ +I + ++V + I KQG W Sbjct: 1 MEELYMKIVLLYGGQSAEHDISLISAHNIMQSIMYNYYEVQPVYITKQGDWLKGAPLSGP 60 Query: 51 VSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTL 110 +S ++ L A A A P S+ + Q G ++FP++HG Sbjct: 61 LSHSNQLALTAGPQARWAEGPEGQSVGTL----------IQPGDIKEADTIVFPVLHGPN 110 Query: 111 GEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRH 167 GEDG++QG L V +P+VG+ V ASA MDK ++K+L AGL P++ A Sbjct: 111 GEDGTIQGFLEVLGMPYVGAGVTASACGMDKVISKQLFHQAGLPQVPYVAFDSREWAQSP 170 Query: 168 NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGR 227 E L PLFVKPAN GSSVG+SK T+ E+ AV+ A +FD +++VEQGI + Sbjct: 171 EEWMNRCEGNLLYPLFVKPANMGSSVGISKATTTEELRAAVEKALQFDRRIVVEQGISAQ 230 Query: 228 EIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAV 287 E E AVLGND+ AS G +V T+DFY YD KY++ + ++ +PA + I+DKI+ A+ Sbjct: 231 ECEVAVLGNDDAHASVVGRLVKTADFYDYDEKYVN-NTVEMEIPAQLPDAISDKIQEYAL 289 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 +AY+ L G++RVD F+T +++ INEINT+PGFT SMYP LW+A+GL DLI L+ Sbjct: 290 RAYRALDGKGLSRVDFFVTASHDIYINEINTMPGFTPYSMYPCLWEATGLNTRDLIEELL 349 Query: 348 ELALERHAADNALK 361 +LAL+ A K Sbjct: 350 QLALKSFEDKQAYK 363 >UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria RepID=DDL_BIFLI Length = 395 Score = 273 bits (698), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 160/402 (39%), Positives = 229/402 (56%), Gaps = 59/402 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K RV +++GG++ EH +S S ++ A+D RF+ + +GI K G+W ++ N Sbjct: 1 MAKKRVVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDPRGWN 60 Query: 61 AD------------------------------DPAHIALRPSA--TSLAQVPGKHEHQLI 88 D +P+HI S TS +P H + Sbjct: 61 LDGGELPTVKITPESRPVMLDPSRGQDGFFIGEPSHINSADSGFGTSFVSMPDPEMHHAL 120 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + L VD + P++HG GEDG++QG+L + +P+VG V ASAACMDK TK +L Sbjct: 121 TS-----LGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVL 175 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESK-----LGLPLFVKPANQGSSVGVSKV----- 198 AG+ AP +T+ + N + A+V +K L PLF+KP+ GSS GV+KV Sbjct: 176 GAAGIPTAPGVTV---DARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADD 232 Query: 199 --TSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL---GNDNPQASTCGEIVLT--- 250 T +++ A A+ A E D KV+VEQGI GREIECAVL D P+AS GEIVL Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 292 Query: 251 -SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 FY +D+KY+D + V VPA + + + +R +A +A++ + AG++RVD F+TP+ Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTPDG 352 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 V++NEINT+PGFT ISMYPK W A+G+ YT+LITRLIE L Sbjct: 353 TVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIEGVL 394 >UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces RepID=D1XE41_9ACTO Length = 401 Score = 273 bits (698), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 158/377 (41%), Positives = 223/377 (59%), Gaps = 38/377 (10%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV +VFGG+S+EH +S+ +A ++ A+D++++DV+ +GI + G+W L AD Sbjct: 32 KPRVAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRW--------ALTAD 83 Query: 63 DPAHIALR----PSATSLAQVPGKHEHQLIDAQN-----GQP--LPTV----DVIFPIVH 107 DPA +A+ P LAQ +D N G+P +PTV DV+FP++H Sbjct: 84 DPARMAISDRQVPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLH 143 Query: 108 GTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-ITLTR--- 163 G GEDG+LQG L ++ +P+VG+ VLASA DK+ KR+ GL + P+ + R Sbjct: 144 GPYGEDGTLQGFLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWE 203 Query: 164 ----ANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVI 219 A R I E ++ G PLFVKPA GSS+G++KV A++ A D K + Sbjct: 204 SDRPAARKRI--MEFAAEHGWPLFVKPARGGSSMGITKVDDPSGLDEAIEEARRHDPKFL 261 Query: 220 VEQGIKGREIECAVLG-NDNPQASTCGEI--VLTSDFYAYDTKYIDEDGAKVVVPAAIAP 276 VE ++GREIEC VL D P+AS EI V DFY ++ KYID A +VPA + Sbjct: 262 VESLLRGREIECGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYIDS--AAGLVPAPLTE 319 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASG 336 E ++R +AV A++ C G+ R D FLT + VINEINT+PGFT ISMYP++WQ SG Sbjct: 320 EQTAEVRRLAVDAFEAASCEGLVRADFFLTEDGTFVINEINTMPGFTPISMYPRMWQESG 379 Query: 337 LGYTDLITRLIELALER 353 + Y +L+ RLI+ AL R Sbjct: 380 VSYPELVDRLIQAALNR 396 >UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema RepID=DDL_TREDE Length = 368 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 224/367 (61%), Gaps = 11/367 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHV-SDASNYLLNAD 62 + + I++GGKS+EHEVSLQSA +I+ IDK + + L+GI K G W++ D + + Sbjct: 1 MNIAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKN 59 Query: 63 DPAHIALRP-SATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + A + ++ A + +PG + + A + + LPT D +F ++HG GEDG++QG+ Sbjct: 60 EKAVLKIKKDEAKRVTVIPGGGAKKGLKAGD-EFLPT-DAVFAVLHGRFGEDGTIQGLFE 117 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN-----RHNISFAEVES 176 +A+LP+VG DV++++ MDK+ TK + +GL I P+I + R + + A E Sbjct: 118 MADLPYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKAILARAEK 177 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L PLF+KP GSSVG V + + + +F +D+K++VE I+ RE+EC+V GN Sbjct: 178 DLEYPLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWDNKILVEACIEAREVECSVTGN 237 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A GEI+ T FY Y+ KY D +GA++ +PA + IR A++AY+ L + Sbjct: 238 TKTVAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLS 297 Query: 297 GMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G++RVD F+ ++ +NE+NT+PGFT ISM+PK+ ASGL Y +LI LIELA++R Sbjct: 298 GLSRVDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMHLIELAIDRFK 357 Query: 356 ADNALKT 362 D LKT Sbjct: 358 TDRKLKT 364 >UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M645_SALAI Length = 360 Score = 271 bits (692), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 147/357 (41%), Positives = 219/357 (61%), Gaps = 15/357 (4%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD-- 63 + +VFGG+S EH +S SA +++ A+D ++VV +GI + GQW ++ + L D Sbjct: 1 MAVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGGDSSQLAITDRR 60 Query: 64 -PAHIALRPSATSLAQVPGKHEHQLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 P A +A L P ++D A+ + L VDV+FP++HG GEDG++QGML Sbjct: 61 LPEVTAESGTAVVLNADPSSGGLLVLDPAEGSRALADVDVVFPVLHGAYGEDGTIQGMLE 120 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES-KLGL 180 +A +P+VG++V ASAA MDK+ TK+L G+ + P+ L R ++ E + +LGL Sbjct: 121 MAGIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVL----RSGMTLTEQDKQRLGL 176 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-- 238 P+FVKP+ GSS G+++VT AV A + D KV+VE + GREIEC VL + Sbjct: 177 PVFVKPSRAGSSFGITRVTDWADLDDAVANARKIDPKVLVESAVIGREIECGVLEAEAGG 236 Query: 239 -PQASTCGEIVLTSD--FYAYDTKYIDEDGA-KVVVPAAIAPEINDKIRAIAVQAYQTLG 294 P+AS E+ + D FY ++ KYID D A + +PA + + +++ AV+A+ L Sbjct: 237 VPEASALAEVRVVGDYDFYDFEAKYIDADAACEYDIPADLPERVTRQVQEYAVRAFTALD 296 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 CAG+AR D F+TPE +V +NE+NT+PGFT SM+P++W ASGL Y L+ RLI AL Sbjct: 297 CAGLARADFFVTPELDVYLNEVNTMPGFTPTSMFPRMWAASGLEYQKLVNRLIRTAL 353 >UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacteria (class) RepID=DDL_KINRD Length = 376 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 153/371 (41%), Positives = 223/371 (60%), Gaps = 25/371 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW-HVSDASNYLLNA 61 K RV +VFGG+S+EH +S +A ++ A+D +DVV +GI G+W V D + + L Sbjct: 6 KPRVAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTD 65 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP-------LPTVDVIFPIVHGTLGEDG 114 + P+ + +P + + + G P L VDV+ P++HG GEDG Sbjct: 66 GALPEV---PATGTPVGLPLDVDTKALQRLGGAPGAPALAELGEVDVVLPLLHGPFGEDG 122 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---- 170 +LQG+L +++ +VGS VLASAA MDK V K LL GL + P+ + RA R + Sbjct: 123 TLQGLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSF-RARRWDTDRDGV 181 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 AEVE+ LG P+FVKPA GSS+G+++VTS E A AV A D KV+VE + GREIE Sbjct: 182 VAEVEA-LGYPVFVKPARAGSSIGITRVTSREGLAAAVAEAVSHDPKVVVEAALVGREIE 240 Query: 231 CAVLGN---DNPQASTCG--EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 C VL + P S G E+V DFY ++ KY+D ++ PA + ++ +R Sbjct: 241 CGVLEDLDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCPADLPDDVVAAVRRT 300 Query: 286 AVQAYQTLGCAGMARVDVFLTP---ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 AV+ ++ +G G+ARVD+F+ P E+ +V+NEINT+PGFT SMYP++W A+G+ Y +L Sbjct: 301 AVRVFEAMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTPFSMYPRMWAATGVDYPEL 360 Query: 343 ITRLIELALER 353 + RLI+LAL R Sbjct: 361 VHRLIQLALRR 371 >UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycetales RepID=DDL_STRGG Length = 391 Score = 267 bits (682), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 154/377 (40%), Positives = 220/377 (58%), Gaps = 38/377 (10%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV +VFGG+S+EH +S+ +A ++ AID++ +DV+ +GI G+W L AD Sbjct: 22 KPRVAVVFGGRSSEHGISVVTAGAVMRAIDRTTYDVLPIGITTDGRWA--------LTAD 73 Query: 63 DPAHIALR----PSATSLAQV----------PGKHEHQLIDAQNG---QPLPTVDVIFPI 105 +P +A+ P L + PG E ++ + G + L VDV+FP+ Sbjct: 74 EPERMAITDRKVPDVDRLTESAEGSVVLSVDPGSRE--VVYTEPGSVPKALGEVDVVFPV 131 Query: 106 VHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN 165 +HG GEDG+LQG+L ++ +P+VG+ VLASA DK+ KR+ GL + P+ + Sbjct: 132 LHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYEVVRPRE 191 Query: 166 RHNISFAEVE------SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVI 219 N A E + G PLF+KPA GSS+G++KV S E A++ A D K + Sbjct: 192 WDNDPAAARERIVDFAGEHGWPLFIKPARGGSSMGITKVDSVEGLDAAIEEARRHDPKFL 251 Query: 220 VEQGIKGREIECAVLG-NDNPQASTCGEI--VLTSDFYAYDTKYIDEDGAKVVVPAAIAP 276 VE ++GREIEC VL D P+AS EI V + DFY ++ KYID A +VPA + Sbjct: 252 VESLLRGREIECGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYIDS--AAGLVPAPLTE 309 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASG 336 E ++R +AV A+ + C G+ R D FLT + VINEINTLPGFT ISMYP++WQ SG Sbjct: 310 EQTAEVRRLAVAAFDAVSCEGLVRADFFLTEDGTFVINEINTLPGFTPISMYPRMWQESG 369 Query: 337 LGYTDLITRLIELALER 353 + Y +L+ RLI+ AL R Sbjct: 370 VDYPELVDRLIQAALSR 386 >UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiaceae RepID=DDL_CHLP8 Length = 364 Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 154/364 (42%), Positives = 221/364 (60%), Gaps = 14/364 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K V + FGGKS EH +S+ SA+ + ID SR+D+ L ID+ G WH + +L Sbjct: 1 MPKQTVALFFGGKSVEHIISIISARAVASHIDHSRYDITPLYIDRGGHWHGGACAKRILA 60 Query: 61 ADDPAHIALRPSATS-----LAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGS 115 D + LR L ++ E + D ++DV F +HG+ GEDG Sbjct: 61 LD--VAVLLRNGGQDEVFERLDEITSFDEGKRFDLT--AFFDSIDVAFLTLHGSYGEDGK 116 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA--- 172 +QG L ++P+ G + +SA MDK +TK DAG+ +A F+++T A+ A Sbjct: 117 IQGCLDTFDIPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFMSVTSADYAADPQAICN 176 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 V + P+FVKPAN GSSVG+SKV + + A+D A D KV+VE+ I GRE+E A Sbjct: 177 AVTERFAFPVFVKPANLGSSVGISKVHNAAELRPALDKACALDAKVLVEETITGREVEVA 236 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 VLGND+P AS GEI+ SDFY ++ KY+ D AK+V+PA + E++ +R A+ ++ Sbjct: 237 VLGNDDPIASVPGEIIPGSDFYDFEDKYVKSD-AKLVIPADLPGEVSAAVRNAALTVFKA 295 Query: 293 LGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 LGC+GMARVD F+ N +++NEINT+PGFT+ISMYP L ASG+ + +LI+RL+ LAL Sbjct: 296 LGCSGMARVDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSASGVEFDELISRLLLLAL 355 Query: 352 ERHA 355 E+ A Sbjct: 356 EKRA 359 >UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD66_9FIRM Length = 364 Score = 265 bits (678), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 152/361 (42%), Positives = 217/361 (60%), Gaps = 18/361 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+ V ++FGG S+EHEVS S N V ID+S+++V+ +GI K+G+W ++A+ + Sbjct: 6 KMCVALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMADG 65 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLI-DAQNGQPLPT-VDVIFPIVHGTLGEDGSLQGML 120 + P P + +H +I +G+ +DV+ P++HG GEDG++QG+L Sbjct: 66 SWEEL---PGNMPCVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLL 122 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS------FAEV 174 +A + +VG VLAS+ CMDK V L G+ P ANR I A V Sbjct: 123 ELAGIAYVGCGVLASSVCMDKAVANALFEANGV---PHTKWVAANRWEIEKDLEGVCAGV 179 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KLG P+FVKPAN GSSVG+SKV+++E+ A+ LA E D KV+ E + G+E+ECAV+ Sbjct: 180 EQKLGWPVFVKPANAGSSVGISKVSNQEELKAAIALALENDRKVVFEAFVDGQEVECAVI 239 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDG-AKVVVPAAIAPEINDKIRAIAVQAYQTL 293 G+D A+ GEI+ ++FY YD KY ++G ++ V+PA + D+++ A AY L Sbjct: 240 GSDPAVATRPGEILAGAEFYTYDDKY--KNGVSQTVIPAHLPEAKLDEVKTYAAMAYTAL 297 Query: 294 GCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 C G+AR D F+ V+INEINT PGFT ISMYPKL + GL LI RLI LA+E Sbjct: 298 NCEGLARCDFFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALAVE 357 Query: 353 R 353 R Sbjct: 358 R 358 >UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0Y9_9ZZZZ Length = 356 Score = 264 bits (674), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 221/361 (61%), Gaps = 17/361 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD- 62 +++ ++FGG S+EH++S SA +I+ ++K ++++ +GI + G+W Y + D Sbjct: 1 MKLAVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWF------YCPDCDP 54 Query: 63 DPAHIALRPSATSLAQV---PGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQG 118 D T +V P + H ++ + G+ + +D +FP++HG GEDG++QG Sbjct: 55 DRVESGAWERMTGKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQG 114 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR----ANRHNISFAEV 174 +L +A +P+VG V ASA MDK +TK+++ G+ A + R N + A Sbjct: 115 LLELAGIPYVGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAA 174 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E+ P+FVKP +QGSSVGV+K + + A + A + D KV+VE+ I G E+ECAVL Sbjct: 175 ETLGAFPVFVKPCSQGSSVGVAKANNLLELAEGLTEALKLDTKVLVEEFIDGHEVECAVL 234 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN PQAST GEI T +FY +D KY DE +++ +PA I E +R AV+ Y LG Sbjct: 235 GNLEPQASTVGEIAPTQEFYTFDAKYKDES-SRLYIPAHITEEQLATVRQDAVRVYTALG 293 Query: 295 CAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C G++RVD F+T ++ EVV NE+N +PGFT+ISMYPKL+ G+GY +L+ RLI LALE Sbjct: 294 CRGLSRVDFFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELLDRLISLALEE 353 Query: 354 H 354 H Sbjct: 354 H 354 >UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID=C7H403_9FIRM Length = 365 Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 153/367 (41%), Positives = 220/367 (59%), Gaps = 28/367 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL V ++FGG S+EHEVS SA VD +D++R++V+ +GI ++G+W ++A++ + Sbjct: 6 DKLCVVVLFGGMSSEHEVSRVSAGTFVDNLDRARYEVLTVGITREGRWLCTEATSAQMAD 65 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLI-DAQNGQPLPT-VDVIFPIVHGTLGEDGSLQGM 119 + P P + +H +I +GQ VDV+ P +HG GEDG++QG+ Sbjct: 66 GSWEEL---PGNMPCVISPDRADHGMILFTPSGQVEKLHVDVVIPALHGLWGEDGTVQGL 122 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES--- 176 L +A +P+VG VLASA CMDK V L AG+ +++ R E+ES Sbjct: 123 LELAGIPYVGCGVLASAVCMDKAVANALFDAAGIPHTKWLSACRW--------EIESDLD 174 Query: 177 --------KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGRE 228 KLG P+FVKPAN GSSVG++K ++ A+ LA E DHKV+ E + G E Sbjct: 175 GVCDGAIAKLGWPIFVKPANAGSSVGITKAHDRDELKQAIALALENDHKVVFEAFVDGHE 234 Query: 229 IECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDG-AKVVVPAAIAPEINDKIRAIAV 287 +ECAV+G+D A+ GEI+ ++FY YD KY ++G ++VV+PA ++ E D+++ A Sbjct: 235 VECAVIGSDPAVATRPGEILAGAEFYTYDDKY--KNGVSQVVIPARLSEEKLDEVKTYAA 292 Query: 288 QAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 AY L C G+AR D F+ + V+INEINT PGFT ISMYPKL + G LI L Sbjct: 293 MAYTALNCEGLARCDFFVEHGTDRVMINEINTFPGFTPISMYPKLMEHEGTPVPALIDHL 352 Query: 347 IELALER 353 IELALER Sbjct: 353 IELALER 359 >UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN Length = 350 Score = 263 bits (672), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 141/354 (39%), Positives = 210/354 (59%), Gaps = 6/354 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+KL V I+FGG S+E+EVSL+S ++++++ +++V+LLGI ++GQW + N Sbjct: 1 MKKLTVAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITREGQW-LRYTGNIESI 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D H + + L+ P + ++ +NG + VDV+FPI+HG GEDG++QG+ Sbjct: 60 RNDSWHQSEKCVPAFLS--PCRQVRGIVTQENGAMTVTKVDVVFPILHGKNGEDGTVQGL 117 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +A +PFVG L+SA CMDKD+ L +G+ P N + LG Sbjct: 118 LELAGIPFVGCHTLSSAICMDKDIAHTLAEGSGIK-TPRSVAVYPNTDLATVQAATEPLG 176 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 PL+VKPA GSS+G++K S + ++ A + D KV++E+ I G E+ CAVLGN Sbjct: 177 FPLYVKPAKAGSSIGITKAYSLSELFFGIENALQHDDKVVIEENITGFEVGCAVLGNREV 236 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EI L F+ Y KY E A + VPA I E+ KI+ A YQ GC G A Sbjct: 237 IVGEVDEIELLQGFFDYTEKYSLET-AHIHVPARIDEELAHKIKQTATHLYQVFGCRGFA 295 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 RVD+F+TP+ ++V NE+NT+PGFT+ S YP + +A+G+ Y +L+ LI LALE Sbjct: 296 RVDMFVTPDGDIVFNEVNTIPGFTSKSRYPSMLRAAGISYKELLDTLIMLALEE 349 >UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCDC65 Length = 356 Score = 260 bits (665), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 157/364 (43%), Positives = 223/364 (61%), Gaps = 32/364 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 + + R+ +VFGG+S+EH VS +A+ ++ A+D R+DV +GI G W V + + + Sbjct: 9 VRRPRLAVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAW-VEETARW--- 64 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DD L P + G + L D +FP++HG GEDG++QG+L Sbjct: 65 -DD-----LAPGTLPAVRADGP-------VFAWERLAEFDAVFPLLHGPWGEDGTVQGLL 111 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK--- 177 +A++ +VG+ VLASA MDK TK + AGL P++T+ R N + VE++ Sbjct: 112 EMADIRYVGAGVLASAVSMDKPFTKTVFSAAGLPQIPYVTI-RPWEWNRERSRVEARIRA 170 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVL-G 235 LGLP+FVKPA GSS GV+ V S + AV A FD KVIVE +G RE+EC VL G Sbjct: 171 LGLPVFVKPARAGSSSGVAMVESWDDLDAAVVAARAFDPKVIVEAFARGKRELECGVLQG 230 Query: 236 ND-NPQASTCGEIVLTS----DFYAYDTKYIDEDGAKV-VVPAAIAPEINDKIRAIAVQA 289 D P AS GEI + + DFY ++ KY+ DG V +VPA I ++++IR AVQA Sbjct: 231 PDGRPVASVVGEITVAAESDHDFYDFEAKYL--DGTSVNLVPADIPVTLSERIRTYAVQA 288 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 ++ +GC G+ARVD FLT ++ +V+NEINT+PGFT SM+P LW+ASG+ Y DL+ RL+ L Sbjct: 289 FEAVGCEGLARVDFFLT-DDGLVVNEINTMPGFTPFSMFPLLWEASGVRYEDLVDRLVRL 347 Query: 350 ALER 353 AL+R Sbjct: 348 ALDR 351 >UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetales RepID=C7QH14_CATAD Length = 394 Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 154/387 (39%), Positives = 223/387 (57%), Gaps = 35/387 (9%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDAS-- 55 +++RV +VFGG+S+EH +S +A +++DA+ + R+++V +GI G+W ++D Sbjct: 9 KRIRVAVVFGGRSSEHAISCVTAGSVLDALRNGPEPQRYEIVPIGIASDGRWVLADLPDG 68 Query: 56 ---NYLLNADDPAHIALRPSA--TSLAQVPGKHEHQLIDAQNGQPLPT----VDVIFPIV 106 N + I L SA +L + G + + +P VDV+ P++ Sbjct: 69 GDLNLAITDGRLPEIGLPASAERANLVTMAGDPTARELTVHEPGAVPKSLGEVDVVLPLL 128 Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL----- 161 HG GEDG+LQG+L +A +P+VGS VLASA MDK+ KRLL AG + P+ + Sbjct: 129 HGPYGEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYEVVRPRDW 188 Query: 162 -TRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIV 220 T R + A E LG P+FVKPA GSS+G++KV + E+ A+D A D KV+V Sbjct: 189 GTEEGRAAVRLAVEE--LGYPVFVKPARAGSSMGITKVDAPEELDQAIDAARRHDPKVLV 246 Query: 221 EQGIKGREIECAVLGNDNPQ----ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAI 274 E I+GREIEC VL PQ AS E+ +T FY + KY+D +V +PA + Sbjct: 247 EAAIEGREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLD-GSTEVDIPARL 305 Query: 275 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NEVVINEINTLPGFTNISMYP 329 + E + IR AV ++TLGC G+ARVD F ++NEINT+PGFT SM+P Sbjct: 306 SAEEIEDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFTPTSMFP 365 Query: 330 KLWQASGLGYTDLITRLIELALERHAA 356 ++WQA+GL Y +LI RLI+ AL R A Sbjct: 366 QMWQAAGLSYPELIARLIDTALLRPAG 392 >UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LDC1_GORB4 Length = 358 Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/353 (39%), Positives = 213/353 (60%), Gaps = 12/353 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 LR+ ++FGG SAEH+VS +A +++ A D+ ++++V +GI K G W +D + L Sbjct: 6 LRLVVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIAALTDGT 65 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P AL + T + + H T V+ P++HG GEDG++QGML + Sbjct: 66 PLPDALDVAGTVVDPLTELAAHAA---------DTPTVVLPLLHGPHGEDGTIQGMLELF 116 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA-NRHNISFAEVESKLGLPL 182 LP+VG+ VL+SA CMDK + K + AG+ ++ + N A+ +LGLP+ Sbjct: 117 KLPYVGAGVLSSALCMDKAMAKVVAAQAGIPQCRWLEFRDGVDDPNTIVADAVGQLGLPI 176 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 FVKPAN GSSVG++K E + A+++A +D+ VI+E+ + GRE+E AVLG+ P+ S Sbjct: 177 FVKPANLGSSVGITKAHDEAELDTAINVALRYDNVVILEEAVTGREVEVAVLGDTAPETS 236 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GEI S+FY Y+ KYI AK+V+PA ++ E ++R +A + + + C GMARVD Sbjct: 237 VPGEIEPGSEFYDYEDKYI-TGAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVD 295 Query: 303 VFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 F ++NE+NT+PGFT SMYPKLW+A+G+ Y DLI +L+ AL H Sbjct: 296 FFYEESGRGWLLNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLVTFALGVH 348 >UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZZ06_9SPHI Length = 394 Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/376 (38%), Positives = 225/376 (59%), Gaps = 25/376 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +G+ FGG+S EHE+S+ SA + AID SR+DV + I K GQW+ + LL+ + Sbjct: 2 KANIGVFFGGRSVEHEISVISALQAIQAIDHSRYDVTPIYISKAGQWYTGEQ---LLDVE 58 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNG----QPLP-TVDVIFPIVHGTLGEDGSL 116 + + L ++T + P ++ +++ +PL +D+ FP++HG+ GEDG+L Sbjct: 59 NYRKLDELLNNSTKIIMSPNFEDYSFVESGAKGLFKKPLKGKIDIAFPVLHGSFGEDGAL 118 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAE 173 QG+ + +P++G DVL+SA MDK + K +L+++GL + ++ N + + Sbjct: 119 QGLFELMGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVKYVWFYSKNWQQDTTSHIGK 178 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECA 232 VE LG P+ VKPAN GSSVG+ K + E+ A+D A F HK++VEQ I +EI C+ Sbjct: 179 VEQTLGYPVIVKPANLGSSVGIKKAANREELEEAIDYAAGFSHKLLVEQTIVDLKEINCS 238 Query: 233 VLGN-DNPQASTCGEIVLTSDFYAYDTKYIDE------DGAKVVVPAAIAPEINDKIRAI 285 VLGN +N QASTC E +++ + +Y KY+ + G K +PA I E++DKI+ + Sbjct: 239 VLGNYENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMSGTKRKLPAEIPTEMSDKIQQL 298 Query: 286 AVQAYQTLGCAGMARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 AV +Q LGCAG++R+D L NEV +NEINT+PG ++S Y LW+A+ + L+ Sbjct: 299 AVDTFQVLGCAGVSRIDFLLDQATNEVYVNEINTIPG--SLSFY--LWEATDKNFGQLVN 354 Query: 345 RLIELALERHAADNAL 360 LI+ A + + N L Sbjct: 355 DLIDTAFKNYREKNNL 370 >UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDP6_ELUMP Length = 353 Score = 254 bits (650), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 133/365 (36%), Positives = 217/365 (59%), Gaps = 18/365 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL + +V+GGKS EHEVS+ SA ++ + K +++V+ + I K+G W + Sbjct: 1 MGKLTIAVVYGGKSVEHEVSVHSAADVCGILSK-KYNVINIFISKEGLWFAQEKCG---- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 P+ I + P ++ + +G + + DV+FP++HGT GEDG +QG+ Sbjct: 56 PAQPSDINVTPVFSN---------DCMFQTADGGTI-SADVLFPVLHGTKGEDGCIQGLF 105 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + P+VG V+ASA MDK+V+K L AG+ P+IT + + F +KLG Sbjct: 106 ELMETPYVGCGVMASAIGMDKEVSKVLAAYAGVPTLPYITFKKGDSVTKDFKAKTAKLGY 165 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLG-NDN 238 P+FVKP N GSS+G++KV E A++ A +FD+ +++E+G++ +EI CAV G +N Sbjct: 166 PVFVKPVNLGSSIGITKVKEEAFLEKAIEFALKFDNDILIEKGVQSPKEIFCAVCGEGNN 225 Query: 239 PQASTCGEIVLTS-DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 ++S+CGE++ +F+ Y +KYID +G V VPA+++ E + ++ + ++ G Sbjct: 226 TESSSCGELIPNGHEFFDYHSKYIDPNGCTVKVPASVSEEEDKLMQKYSRMIFKVFKACG 285 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 ARVD L + ++ +EINTLPG +N S++P+LW+A+G Y D++ LI LAL+R Sbjct: 286 FARVDFLLGKDGQIYFSEINTLPGMSNASLFPQLWRAAGKKYEDVLDTLINLALKRREQI 345 Query: 358 NALKT 362 LKT Sbjct: 346 KTLKT 350 >UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGF5_CLOCL Length = 341 Score = 254 bits (649), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 136/352 (38%), Positives = 220/352 (62%), Gaps = 23/352 (6%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 + ++FGG+S+E+++SL SA +++ IDK+++ V +GI K+G W+ S + +D + Sbjct: 5 IAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKEGLWYEYTGS--IDKIEDGS 62 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 I +++ D + VDV+FP++HG GEDG++QG+ ++ L Sbjct: 63 WI-------------NDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLCKLLRL 109 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN--ISFAE-VESKLGLPL 182 P VG+ VL+SA CMDK +K +L D +N+ P+ + N S+ E V KLG + Sbjct: 110 PCVGASVLSSALCMDKAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKKLGEEV 169 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 FVKP+N GSSVGVSK+ +E+ + +A++ AF++D +V+VE+ I REI+ A++ + + Sbjct: 170 FVKPSNGGSSVGVSKLKAEDSFEVAIEKAFKYDKRVLVEKAIAAREIKVAIIEDGIELKT 229 Query: 243 TCGEIVLTS---DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 GE+V + +FY Y+ KY E +++VPA + E+ DKI A+A++AY+ L C GMA Sbjct: 230 KIGEVVYKNSNKEFYDYEVKYT-EGMNELIVPAKLETEVMDKIEALALKAYKVLDCRGMA 288 Query: 300 RVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 RVD F+ +E+ +NEINT+PGFT S +PKLW+ +G+ T+LI LI+ A Sbjct: 289 RVDFFIDRYTSEIYLNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNA 340 >UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacterium RepID=DDL_CORJK Length = 373 Score = 253 bits (647), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 214/368 (58%), Gaps = 24/368 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + V +++GG+S EH VS SA ++D +D ++VV +GI + G W L AD Sbjct: 10 RTTVAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWVPGTTDTSRLRAD 69 Query: 63 D---------PAHIALR----PSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGT 109 H+ L +A S + Q G+ VDV+FP++HG Sbjct: 70 GRDMPRVEDGGVHVQLTFGGAGTAGSAGSGAAGEMRYVTGPQAGEVFAQVDVVFPVLHGV 129 Query: 110 LGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI 169 GEDG++QG+L +A + +VG+ VLASAA MDKD TKRL R+AG+ + + L + Sbjct: 130 NGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGEELILFQPRELT- 188 Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AE + +LGLP+FVKPA GSS+G+SKV S E++ A+DLAF D+KVIVE I G E+ Sbjct: 189 --AEEKERLGLPVFVKPARGGSSIGISKVDSWEEFDAAIDLAFSNDNKVIVEAMIHGAEV 246 Query: 230 ECAVLGNDNPQASTCGEIVL--TSD----FYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 EC VL + + + +L T D FY +D KY+D +PA + E +IR Sbjct: 247 ECGVLQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDST-VSATIPAPLPAETIKEIR 305 Query: 284 AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 +A++ + LGC G+ARVD F T EN V+NEINT+PGFT ISMYPK++ A G+ + DL+ Sbjct: 306 QLAIRTFNALGCDGIARVDFFAT-ENGPVLNEINTMPGFTPISMYPKMFAAEGVSFGDLV 364 Query: 344 TRLIELAL 351 + LI AL Sbjct: 365 SALIARAL 372 >UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella RepID=DDL_LEGPA Length = 364 Score = 253 bits (646), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 142/366 (38%), Positives = 213/366 (58%), Gaps = 22/366 (6%) Query: 8 IVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHI 67 +++GGKS EHEVSL SA +++ +D ++ ++ + +DK G++H D ++ L +D + Sbjct: 9 LLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLPVV 68 Query: 68 ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPF 127 + + E LI NG+ +++FP+VHG L EDG LQG+L +A + + Sbjct: 69 TEKSTPL---------EGLLI---NGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAY 116 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKLGLPLFV 184 VG DVL+SA MDKD+ +RL GL A + L+ A+ EV S+ G PLFV Sbjct: 117 VGCDVLSSAIGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFV 176 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND----NPQ 240 KP + GSSVG+ K + ++ AV A +D +++VE+ I GREIE AVL N P+ Sbjct: 177 KPCSLGSSVGIHKANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKPR 236 Query: 241 ASTCGEIVLT--SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 S GEI + +Y+Y KY++ +++PA + + ++++ A + L C GM Sbjct: 237 VSMVGEIKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGM 296 Query: 299 ARVDVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 ARVD F+ + E + NEINTLPGFT+ISMYPKLWQA+G+ Y DL+ LI LA+ H Sbjct: 297 ARVDFFVNDKTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLLDELINLAMVHHNCR 356 Query: 358 NALKTT 363 L T Sbjct: 357 QHLVTN 362 >UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiales RepID=A9KKE7_CLOPH Length = 353 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 138/361 (38%), Positives = 213/361 (59%), Gaps = 17/361 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + ++FGG+S+EHEVS SA +++ ID +D+VL+GI K+G+W ++ + Sbjct: 1 MDKKTIVVLFGGQSSEHEVSCVSAVTVINHIDLDHYDIVLVGITKEGKWLLTGS------ 54 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D R + P + + L I N VDV+FP++HG GEDG++QG+ Sbjct: 55 VEDITSGVWRDGKKTAILSPDRSKPSLLIMEDNKVEYQKVDVVFPVLHGLFGEDGTVQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF--ITLTRANRHNISFAEVESK 177 L +A +P+VG VLAS+ MDK TK ++ G+ A + + N +E++ Sbjct: 115 LELAGVPYVGCGVLASSVSMDKLYTKIIVDSLGIRQAAYEPVYAKELEEMNKVVERIENR 174 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 + P+F+KP+N GSS G++K + + + + A E D K++VE+ I GREIECAVLG Sbjct: 175 ISYPVFIKPSNAGSSKGITKAHNRDDLIVGLKEAAEHDRKILVEETIVGREIECAVLGGM 234 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVV---VPAAIAPEINDKIRAIAVQAYQTLG 294 +AS GEI+ ++FY YD KY + D ++ +P A EI+D AV+ ++ + Sbjct: 235 EAKASGVGEILAAAEFYDYDAKYNNADSKTIISPELPEGKAQEISDA----AVKIFRAVD 290 Query: 295 CAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 ++RVD FL + NE+V NEINTLPGFT ISMYP LW+A G+ L+ +LI+ A R Sbjct: 291 GYSLSRVDFFLEKDTNEIVFNEINTLPGFTAISMYPMLWEAKGIAKPQLVEKLIQTAFTR 350 Query: 354 H 354 + Sbjct: 351 N 351 >UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R6P1_9CHLA Length = 788 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 141/355 (39%), Positives = 197/355 (55%), Gaps = 31/355 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KL +GI++GGKS EHEVSL S++ I ++D+ ++ I K+G+W + + Sbjct: 452 KLHIGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKNE-------- 503 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 G E LI +Q Q L D++FPI+HGT GEDG++QG L + Sbjct: 504 ------------------GDSEEFLISSQVLQQLQKCDLLFPILHGTFGEDGTIQGFLEI 545 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLG 179 P+VG D +SA CMDK + KRL++ AG+ + FI + NR E+ KL Sbjct: 546 LGKPYVGCDHQSSAICMDKAIAKRLMQHAGIQTSSFIAFSETDWKNRAKDLLHEIREKLI 605 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKP + GSS+GV +VT+E + A+ AF FD ++VE I GREIE AVLGND Sbjct: 606 FPIFVKPVHLGSSIGVQRVTNETELDAAIRNAFAFDPVILVENEIAGREIEFAVLGNDQI 665 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE-INDKIRAIAVQAYQTLGCAGM 298 GE+ + Y KY D A P A PE ++ +AIA++AYQ C GM Sbjct: 666 TVLPPGEVFSAGKIHDYRGKY-SRDNATPSTPQADLPEKWMEEGKAIALKAYQAATCKGM 724 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 AR+D FL NEIN +PGFT S+YP++ +A+G +LI RL+ L L+R Sbjct: 725 ARIDFFLDQSGSFWFNEINPIPGFTPFSLYPQMCEANGFSNEELIDRLLILGLQR 779 >UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W6_9FIRM Length = 358 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 215/357 (60%), Gaps = 15/357 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLR+G+VFGG+S+E+ VSL S + + I +++ L+GI+K G +++ + + Sbjct: 8 MSKLRLGVVFGGQSSEYSVSLHSVTSFLRQIHADNYEMTLIGINKNGHFYLYNG-----D 62 Query: 61 ADDPAHIALRPSAT--SLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D H T S A V G ++ + +D +FP++HG GEDG +QG Sbjct: 63 VDSIEHDTWENEETCVSCAWVNGG----IMPLDGSNKVIELDCVFPVLHGKNGEDGLIQG 118 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L + N+ +VG DV++SA MDK++ L ++A + A +I L ANR N +F +++ K+ Sbjct: 119 LLELMNIHYVGCDVMSSAMSMDKEIMHILCKEAKIPCADYICL-YANRENPTFEQIQEKI 177 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGN 236 LP +KP N GSS GV V ++E++ A AF +D K++VE+ IKG EI CAV+GN Sbjct: 178 ELPWIIKPCNAGSSYGVHFVNNKEEFESACKDAFFYDGRGKILVEKVIKGFEIGCAVMGN 237 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 + + EI +T F+ ++ KY + GA + PA I + + + +A + Y + C Sbjct: 238 EEIFTGSIDEIEITGGFFDFEGKY-EMKGAAIYCPARIDEKTFKEAQELARKTYIAMNCC 296 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 GMARVD+F+T + EV++NE+NT+PG T S YP + + +G+ + DLI +LIELA++R Sbjct: 297 GMARVDMFVTEDKEVILNELNTIPGLTATSRYPSMMKVAGIEFADLIDKLIELAMQR 353 >UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S655_9ACTO Length = 377 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 147/374 (39%), Positives = 209/374 (55%), Gaps = 29/374 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHV---------- 51 E +R+G+VFGG SAEHEVS SA + A+ + VV LGI + G + Sbjct: 3 ETVRIGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHL 62 Query: 52 -----SDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIV 106 A + L PA R + T V + A+ +DV+FP++ Sbjct: 63 GTVTAGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAE-------LDVVFPVL 115 Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 HG GEDG +QG+L +P+VG +LASA MDK KR LR + P++ Sbjct: 116 HGPYGEDGVVQGLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTW 175 Query: 167 HNISFAEVESKLGL--PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI 224 S E + +GL PLFVKPA GSS+G+S+V + AV+ AF DH V+VEQG+ Sbjct: 176 RAASDPE-KLVVGLRGPLFVKPARMGSSIGISRVADGDDLVAAVEEAFRHDHVVLVEQGV 234 Query: 225 KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRA 284 GRE+EC VLG P+AS GE+ + ++ Y KY D ++VPA + E+ ++IR Sbjct: 235 TGRELECGVLGGWQPEASAVGEVRVAGGWFDYRQKYFG-DADPMIVPAPLPDEVTERIRE 293 Query: 285 IAVQAYQTLGCAGMARVDVFLTPE--NEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 ++V+A+ +G G+ARVD FL E +++ +NE+NTLPGFT SMYPK+W SG+ Y ++ Sbjct: 294 LSVRAFTAIGGWGLARVD-FLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEV 352 Query: 343 ITRLIELALERHAA 356 + RL+ LA RHAA Sbjct: 353 VDRLVALAFTRHAA 366 >UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWG2_9CLOT Length = 342 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 144/346 (41%), Positives = 210/346 (60%), Gaps = 27/346 (7%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL--------RPSAT 74 SA ++ AIDKSR++V +GI K G W + P I L P Sbjct: 2 SATTVLRAIDKSRYEVTPVGIKKDGSWWLY-----------PGDIGLILDGRWESCPDNL 50 Query: 75 SLAQVPGKHEHQLI--DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDV 132 VP L+ D+ + + +D + P +HG GEDG++QG+L++A +PFVG D+ Sbjct: 51 PAFLVPDASVGGLLIRDSDHSDTVKKIDCVIPALHGKNGEDGTIQGLLQLAGIPFVGCDM 110 Query: 133 LASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI---SFAEVESKLG-LPLFVKPAN 188 +SAACMDK +T +L AG+ A F L + + ++E LG P+FVKPAN Sbjct: 111 TSSAACMDKVITNVMLEQAGIPQARFTWLYAYEFQSAPDEAVLKIEKDLGSYPVFVKPAN 170 Query: 189 QGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQASTCGEI 247 GSSVGVSK + E+ A+ A + D K+++E+ I G+E+ECAVLGN D+ AST GEI Sbjct: 171 AGSSVGVSKAENREELRAAIAKAAKEDGKILIEENIVGQEVECAVLGNEDDLLASTVGEI 230 Query: 248 VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP 307 +++FY Y+ KY+ + + +PA + + + IR+ A +AYQ LGC+G+ARVD F+ Sbjct: 231 APSNEFYDYEAKYLS-GTSGLYIPAHLESGVIETIRSTAQKAYQVLGCSGLARVDFFVRN 289 Query: 308 ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +EV++NE+NTLPGFT+ISMYPKL + GL +LI RLI+LA++R Sbjct: 290 GSEVLLNELNTLPGFTSISMYPKLMEHEGLSNQELIHRLIQLAVKR 335 >UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiaceae RepID=A8MKQ7_ALKOO Length = 349 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 123/356 (34%), Positives = 223/356 (62%), Gaps = 10/356 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K+ V ++FGG+S+E+EVSL+SA +++ +D ++DV+ +GI + G+W + + L+ Sbjct: 1 MGKIVVAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGT---LD 57 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT-VDVIFPIVHGTLGEDGSLQGM 119 L S + P K + ++I+ + + T +D++FP++HG GEDG+LQG+ Sbjct: 58 KIKENTWFLDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGL 117 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL-TRANRHNIS-FAEVESK 177 + +P+VG DV AS+ C+DKD ++++ AG ++ I + R I+ FAE Sbjct: 118 FEITGIPYVGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAIDNRTKEDEINKFAE---N 174 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 +G P++VKP+ +GSS+G++K + ++ A + D KV++E+ I+G E+ CA+LGND Sbjct: 175 VGYPIYVKPSREGSSIGITKAENHSDLMGGIEAALKLDGKVVLEENIEGFEVGCAILGND 234 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + T EI + + F+ + KY ++ +K+ +PA I +++++I+ I Y+ LGC+G Sbjct: 235 DLIVGTVDEIEVPNGFFDFTEKYTLQN-SKIHLPARIDQDLSERIKEIGKGIYKALGCSG 293 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 ++RVD+F+ + +V NE+NTLPGFT S +P + +G+ Y D++ +LI+L ++R Sbjct: 294 LSRVDLFVDKNHRIVFNEVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLIDLGMQR 349 >UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FAD8 Length = 371 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/361 (40%), Positives = 210/361 (58%), Gaps = 13/361 (3%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWH-VSDASNYLLNADDP 64 V ++FGG+S+EH VS +A ++ AI + V+ +GI K G W V D S + D+ Sbjct: 10 VAVLFGGRSSEHAVSCVTAAGVIRAIADDAYRVLPIGITKAGVWRIVEDWSTMAFDPDNM 69 Query: 65 AHIALRPSATSLAQVPGKHEHQLI--DAQ-NGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + T + L+ DA+ N L +VDV FP++HG GEDG+LQG+ Sbjct: 70 PEVV--DNGTEIIPPISAQGSPLLQRDAEGNYSELGSVDVYFPLLHGQYGEDGTLQGLFE 127 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF--ITLTRANRHNISFAEVESKLG 179 +++ FVGS V ASAA MDK TK L+ AG+ P+ +T T + + LG Sbjct: 128 LSDTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWELVTETMWEADQAEAQDRITGLG 187 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG---N 236 LP+FVKPA GSS+GVS+V S E A+ AFE D KVIVE + GREIECAVLG + Sbjct: 188 LPVFVKPARAGSSMGVSRVESAEGLDQALRSAFEHDSKVIVEPQVVGREIECAVLGSVHD 247 Query: 237 DNPQASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + S GEI ++ + FY ++ KY++ A++ PA + +I+ ++ Q ++ Sbjct: 248 REVRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLTCPARVDETTTARIQELSAQVFRLFD 307 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 C G++RVD F+T EV+INEINTLPGFT S YP +W SG+ Y LI+ LI +AL H Sbjct: 308 CTGLSRVDTFVTDAGEVLINEINTLPGFTPTSAYPFMWSKSGIEYPALISELITIALVDH 367 Query: 355 A 355 A Sbjct: 368 A 368 >UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0K0_9FIRM Length = 359 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 139/369 (37%), Positives = 208/369 (56%), Gaps = 26/369 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK V ++FGG+S EHE+S SA I + + VV + IDK G WH Sbjct: 7 EKKSVAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWH---------RV 57 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 DD ++ K+E + + Q L VD+++ ++HG GEDG +QG+ Sbjct: 58 DD--------GIIDFTKLDVKNEAESCTIE--QCLTDVDIVWSVLHGPYGEDGKIQGLFE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE--SKLG 179 + ++P+VG +V ASA MDK + K + AGL + L + E+E KLG Sbjct: 108 MYDVPYVGCNVTASAIAMDKVIAKNVFEHAGLKTVKYELLLEKEYRDDEERELERIEKLG 167 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T E++ A++ AF++D+++I+E+ I G+E+E AV GN Sbjct: 168 FPMFVKPANMGSSVGISKATDEKKLKKAIEDAFQYDYRLIIEENIIGKEVEVAVFGNGPY 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GEI ++FY D KY +++PA I+ E ++ A A + + C G+ Sbjct: 228 EASVAGEIRPRAEFYDVDAKYHSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGIC 287 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE----RH 354 RVD F+ + NE+ INE+NT+PGFT ISMYPKLW+ SG+ +L+ R+I E + Sbjct: 288 RVDSFIKADSNEIFINEVNTMPGFTEISMYPKLWEVSGISNKELLERIINYGYETYKGKS 347 Query: 355 AADNALKTT 363 + D AL+ T Sbjct: 348 SRDAALRGT 356 >UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D443_PAESJ Length = 359 Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 221/369 (59%), Gaps = 20/369 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + ++ +++GGKS EHEVSL++A ++ +I++SR++ + + ++G W A Sbjct: 2 RTKLYVLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGPI----AK 57 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D I R AT P + +++ P P V+ P++HG GEDG++QG+L + Sbjct: 58 DELTIE-RLIATPTFPDPARSIGEILSGIMALPGP--KVVLPLLHGPNGEDGTVQGLLEL 114 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG--- 179 N+P+VG+ VL++A +DK ++K++L AG+N + R R+ + ES L Sbjct: 115 VNVPYVGNGVLSAALTLDKAMSKQVLAQAGINQTEY----RVYRYEEWITDEESVLRKAE 170 Query: 180 ----LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 P +VKPA+ GSS+G+S+ T+ + + AF +D K+++E+ + GREI+ AV+G Sbjct: 171 DSIEYPCYVKPASLGSSIGISRCTNRGELLAGIREAFSYDKKLVIEREVSGREIQVAVIG 230 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N+ P AS GE + F+ Y++KY+D+ + +PA +A + +IR +AV+AYQ GC Sbjct: 231 NERPLASLPGEFIHDHIFFDYESKYMDKR-LTMQIPANLADGLTPRIRELAVRAYQAHGC 289 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQ-ASGLGYTDLITRLIELALERH 354 G+ARVD FL E ++ +NEIN LPGFTN SMYP +W+ +G Y++LI +LI A+ RH Sbjct: 290 EGLARVDFFLDGEGQLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLIGHAIARH 349 Query: 355 AADNALKTT 363 ++ T Sbjct: 350 QNKQTIQYT 358 >UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae RepID=B7A6N0_THEAQ Length = 321 Score = 246 bits (629), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 138/350 (39%), Positives = 202/350 (57%), Gaps = 32/350 (9%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV ++ GGKS EHEVSL SA+ ++ + F L I K G W + + + L A Sbjct: 2 EIRVLLIAGGKSPEHEVSLASAEGVLKHMP---FPTELAVIAKDGAWLLGEEALRALEA- 57 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 +V K EH + V+FP++HG +GEDG++QG L + Sbjct: 58 ---------------KVAPKGEHPFPPPLDWD---RYGVVFPLLHGPMGEDGTIQGFLEM 99 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 P+VG+ V SA CMDKD +KR+L AG+ + P++ L R + F P Sbjct: 100 LGKPYVGAGVAGSALCMDKDFSKRVLAQAGIPVVPWVALYRGETPLVPFEP-------PF 152 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQA 241 FVKPAN GSS+G+S+V A++ AF D K +VE+ + G RE+E VLGN +A Sbjct: 153 FVKPANTGSSIGISRVERYADLEEALEEAFRHDRKAVVEKALSGVRELEVGVLGNVFGEA 212 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 S GE+ + FY Y+TKY A++++PA + P + ++ +A++AY+ LG GMARV Sbjct: 213 SPVGEVRYEAPFYDYETKYTP-GRAELLIPAPLDPGTEETVQEMALKAYKVLGLRGMARV 271 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 D FL E E+ +NE+NT+PGFT SM+P+L+ A GL Y +L+ RL+ELAL Sbjct: 272 DFFLA-EGELYLNEVNTIPGFTPTSMFPRLFLAKGLTYPELLRRLVELAL 320 >UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=DDL_BIFA0 Length = 378 Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 150/385 (38%), Positives = 210/385 (54%), Gaps = 42/385 (10%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K RV +++GGK+ EH +S SA + + A+D F+ V +GI K G W V + Sbjct: 1 MAKTRVAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFV--------D 52 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ------------PLPTVDVIFPIVHG 108 DP L + P E L G L +DV+ P +HG Sbjct: 53 GQDPLGWNLAEGLPEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHG 112 Query: 109 TLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL-TRANRH 167 GEDG++QG+ + +P+VG VLASAACMDK TK LLR AG+ +AP ITL TR Sbjct: 113 PFGEDGTIQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDA 172 Query: 168 NISFAE---------VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE---FD 215 + FA E+ L PLFVKP+ GSS GV+KV A FE D Sbjct: 173 SDEFATDGEEFLRQVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHD 232 Query: 216 HKVIVEQGIKGREIECAVLG---NDNPQASTCGEIVLT------SDFYAYDTKYIDEDGA 266 +V+VEQGI REIECAV+ D +A+ GE+VL FY +D+KY+D + Sbjct: 233 WRVLVEQGIDAREIECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQAS 292 Query: 267 KVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNIS 326 +PA I ++ ++R AV+A+ + G++RVD F+T + +V++NEINTLPG T+IS Sbjct: 293 HTEIPAKIGDDLIARVRETAVRAFDAVDGMGLSRVDTFVTADGDVLVNEINTLPGCTSIS 352 Query: 327 MYPKLWQASGLGYTDLITRLIELAL 351 M+P+ W+A G+ + ++T LIE AL Sbjct: 353 MFPQAWEAMGIPFRTVVTDLIEGAL 377 >UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacillales RepID=DDL_LACLM Length = 349 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 217/363 (59%), Gaps = 35/363 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ SRF V I K G++ + Sbjct: 1 MSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFT---- 56 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVD---------VIFPIVHGTLG 111 D PA E +L+ + P + V+FP++HG +G Sbjct: 57 -DRPA-----------------EEEKLLTNDLAESYPKISPAAIYEKDAVVFPVLHGPMG 98 Query: 112 EDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF 171 EDGS+QG L + L +VG ++L++++ MDK + K + G+ P++ A+ + + Sbjct: 99 EDGSIQGFLEILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVPYVA-AFADENQVEI 157 Query: 172 A-EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 A EV KL P+FVKPAN GSSVG+SKV A+ A+++D++V++EQG+ REIE Sbjct: 158 AQEVVEKLDFPVFVKPANMGSSVGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIE 217 Query: 231 CAVLGNDNPQASTC-GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 CAVLGN++ ++T GE+V FY Y++KYID + ++ +PA ++ ++ KI+ A +A Sbjct: 218 CAVLGNNSDVSATLPGEVVKDVGFYDYNSKYID-NKIQMDIPAKVSADLAQKIQEYAKKA 276 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 Y+ + AG++R D F+T + V +NE+N +PGFT SMYP LW+ GL Y+DLI +L++L Sbjct: 277 YKAVNGAGLSRCDFFVTKDGNVYLNEVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDL 336 Query: 350 ALE 352 A E Sbjct: 337 AKE 339 >UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified Erysipelotrichaceae RepID=Q6JH79_CLOIN Length = 355 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 213/361 (59%), Gaps = 14/361 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEK+++ I+ GGKS E+ VSL SA +++ I+K ++++ +GI K G+W+ Y + Sbjct: 1 MEKIKLAIILGGKSDEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYA-----YSGD 55 Query: 61 ADDPAHIALRPSATS----LAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D H A L+ G + A VD IFPI+HG GEDG++ Sbjct: 56 VDGIEHDTWLCEAHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTI 115 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR--HNISFAEV 174 Q + ++ +P+VG + A CMDK++ ++ AG++ APF+ + A+ + + Sbjct: 116 QTLFELSGIPYVGCGHMRFAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHA 175 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHK--VIVEQGIKGREIECA 232 + LGLP+F+KPAN GSS G+ ++ S + + A+ AF D K VI+E I+G EI A Sbjct: 176 KETLGLPIFIKPANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVA 235 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 V+GN A + EI + F+ Y+ KY D + + PA I+P++ ++ R IA +AY+ Sbjct: 236 VMGNKELFAGSVDEIETAAPFFDYEGKYEMVD-SHIYCPARISPKLFEEAREIAKKAYRA 294 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + C GM RVD+F+TPE+ +++NE+NT+PGFT+ S YP + + +G+ + +LI +L+ LA+E Sbjct: 295 MNCKGMTRVDMFVTPEDTIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALAME 354 Query: 353 R 353 Sbjct: 355 E 355 >UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pallidum RepID=DDL_TREPS Length = 396 Score = 243 bits (621), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 143/374 (38%), Positives = 221/374 (59%), Gaps = 25/374 (6%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNY------ 57 + V +++GG+SAEH+VS++SA+ + + + V+L+GI ++G W+ A Sbjct: 2 VHVTLLYGGRSAEHDVSVRSARFVARTL-CLQHTVMLIGITRRGVWYAQPACALEQLCTG 60 Query: 58 ----LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGED 113 + D+ + L P G + A G P T DV+FP++HG+ GED Sbjct: 61 TVALSIQEDEKRRVCLVPG--------GGTAGAFVIA--GMPCVT-DVVFPVLHGSYGED 109 Query: 114 GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR-ANRHNIS-- 170 G++QG+L + +P+VG V ASA MDK K L + AGL + PF+ + A R ++ Sbjct: 110 GTVQGLLEMLQVPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEF 169 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 A++E++LG PLFVKPA GSSVG S V + A++ AF++D V+VE+ ++ REIE Sbjct: 170 VAQLETRLGYPLFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIE 229 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 CA+ GN GE++ FY Y+ KY D A+V+V A + ++I +A++AY Sbjct: 230 CALSGNGPYTVHGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAY 289 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + LG G+ARVD FL EV +NE+NT+PGFT+IS++P++ QA+G+ DL+ +L+ A Sbjct: 290 EALGLTGLARVDFFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLLSCA 349 Query: 351 LERHAADNALKTTM 364 ER AA AL T + Sbjct: 350 RERFAARAALSTDL 363 >UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FYV0_9DELT Length = 360 Score = 243 bits (621), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 217/381 (56%), Gaps = 40/381 (10%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M R+ +V+GG+S+EH+VS++SA ++ A+D+SRF+ V + + ++G + Sbjct: 1 MSPQRLALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPID----- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDA-QNGQP-------LPTVDVIFPIVHGTLGE 112 A +PG E L ++G+P L + FP++HG GE Sbjct: 56 ----------------ASLPGPTEAPLRAVLESGEPIADLGAFLRSCACTFPLLHGPYGE 99 Query: 113 DGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDA--GLNIAPFIT--LTRANRHN 168 DG++QG+ V ++P+VGS VLAS+ CMDK KR + A + + P I+ L R Sbjct: 100 DGTIQGLFEVFDVPYVGSGVLASSLCMDKVAFKRYVAAAPNDIPVTPGISVDLVLEGRER 159 Query: 169 I--SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG 226 + G PLFVKPANQGSSVGVS+ A+DLA +D +V++E+G+ Sbjct: 160 VFERAHAAAEAHGFPLFVKPANQGSSVGVSRADDLASLDAALDLALRYDAQVVIEKGLDA 219 Query: 227 REIECAVLGNDNPQA--STCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 REIE AV G+ P S GEI+L ++Y Y+TKY+D D A +P + +++ Sbjct: 220 REIELAVFGDGGPDTVVSPPGEIILPKGEWYTYETKYVD-DVASYAIPVELPAATTARLQ 278 Query: 284 AIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 +A++A++ C+G+ARVD + ++ E +NE+NTLPGFT+ISMYPKL +G+ YT+L Sbjct: 279 ELALRAFRATRCSGLARVDFLVERDSLEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTEL 338 Query: 343 ITRLIELALERHAADNALKTT 363 I++L++L L + L TT Sbjct: 339 ISKLVDLGLAAYEQRRGLSTT 359 >UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y930_9FIRM Length = 350 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 212/361 (58%), Gaps = 26/361 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EKL V ++FGG S E+ VSL SA ++ A+D R+ VV +GID QG W ++ AS + A Sbjct: 3 EKLNVAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEA 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D H A S L + +L D + G+ + VDV FP++HG GEDG+LQGM Sbjct: 63 DQ-WHTA---SDQRLRLTLARRNFELKD-ETGEAV-DVDVFFPVLHGRNGEDGTLQGMFE 116 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---- 177 + ++PFVG + AS MDK ++ +L R G+ ++PF+ +++E++ K Sbjct: 117 LFHIPFVGCGMDASLLGMDKALSHQLARQNGIEVSPFVVF--------AYSEIDQKRESL 168 Query: 178 --LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L LP FVKPA GSS+G++K+ + E+ A A + D ++++E+ + G EI C++L Sbjct: 169 KRLHLPCFVKPARGGSSIGITKINTWEELDAACACAAKHDRRILIEEAVSGEEIGCSIL- 227 Query: 236 NDNPQASTCG---EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + P G I L SDF+ Y+ KY+D A+V PA + +++++R +A + ++ Sbjct: 228 -ETPDGLVLGAVDRIHLNSDFFDYEEKYVDTH-AEVECPAQLPDFVSEQMRRLARKLWEI 285 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 C G+ RVD FLTP+ ++ NEINTLPG T S YP++ +G+ + ++ LIE AL+ Sbjct: 286 HHCQGLVRVDCFLTPDQRILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEALQ 345 Query: 353 R 353 R Sbjct: 346 R 346 >UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacillales RepID=DDL_LEUMM Length = 377 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 216/371 (58%), Gaps = 13/371 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T A P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHALKSAGD------FDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLTSD-----FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKTTM 364 A + L + Sbjct: 355 FAQNKKLSYSF 365 >UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostocaceae RepID=DDL_OENOB Length = 377 Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 135/359 (37%), Positives = 215/359 (59%), Gaps = 19/359 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK+RVG+ FGG S+EH+VS +SAKN DA+D ++ + + I K+G S+ S +L Sbjct: 3 EKIRVGLFFGGNSSEHDVSKRSAKNYYDALDPEKYQIFPVLISKKGIMIDSETSKRVLFG 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQL--IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D + LA +P K+ ID+ L DV+FP VHG LGEDG+L G+ Sbjct: 63 EDEDEL--------LAGLPNKNADIFGPIDSIRNLKL---DVLFPSVHGNLGEDGTLAGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 R+ N+P+VGS + A A DK +TK L+ G+ +I + + +++ + V +LG Sbjct: 112 FRLMNIPYVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKPDWDSVSKQLG 171 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVGVS+VT+ E+Y A+ +F++D K++VE+ ++ E+E +LGND Sbjct: 172 EVVFVKAANQGSSVGVSRVTNAEEYENALRDSFQYDEKLLVEKAVESPTELEIGLLGNDR 231 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 S G S ++ Y K++D K +PA I+P + ++ +AV+AY+ L Sbjct: 232 VITSPIGAHWAPGQDHGSGWFDYKNKFVDNSKMKYQIPAKISPAKSKELENMAVKAYKVL 291 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G G AR+D ++ + E+ ++E NTLPG TN+S++P L++A+G+ + +LI+LA E Sbjct: 292 GIKGFARIDFLMSKDGEIFLSEPNTLPGNTNMSLFPILFEAAGMNRSQQAEKLIQLAFE 350 >UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomonas putida RepID=DDLA_PSEPK Length = 352 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 143/357 (40%), Positives = 208/357 (58%), Gaps = 19/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M++ + +VFGG+S+EH V+L+SA I A+ V +GID++G W Sbjct: 1 MKQNVIALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPG 60 Query: 61 ADDPAH--IALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 A D + I++RP SL+ ++G +D++FP +HG GEDG++QG Sbjct: 61 AVDRSAPLISIRPGHRSLSYT---------TQESGTVEIGIDLLFPALHGRWGEDGTIQG 111 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + + LP VGS VL SA MDKDVTKR+++ AGL + P++ + + E+ L Sbjct: 112 LAAMCGLPCVGSGVLGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMR----PWEELVECL 167 Query: 179 GLP-LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-N 236 G LFVKPA GSS+GVS+V++ +YA A +A D KV+VE + GREIEC VL Sbjct: 168 GSSTLFVKPATSGSSIGVSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELE 227 Query: 237 DNPQASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + AS GEI+ +Y Y KY + VP+ + P+I +I+A++VQA++ L Sbjct: 228 EGLMASVVGEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLE 287 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G ARVD FLT E E+++NEINTLPGFT+ SMYPK+++ SG L+ L+E L Sbjct: 288 LKGYARVDFFLTEEGEIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGL 344 >UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococcus RepID=DDL_PROMP Length = 355 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 213/360 (59%), Gaps = 23/360 (6%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNY 57 EK +GI+FGG+S EH+VS+ SAK + A+ + +RF V I+K G W +D S Sbjct: 5 EKKCIGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDNDQSLV 64 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 LL + QV K E I+ N +D+ FP++HG GEDG++ Sbjct: 65 LLKE------KRKNETIDKNQVFPKRE---INFLNTIEFQGIDIWFPLLHGVNGEDGAIH 115 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN------RHNISF 171 G+L+ P VG +L SA MDK + K++ + ++ + + ++N+S Sbjct: 116 GLLKFTQKPIVGGGILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLS- 174 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 E+ KL LP+FVKPAN GSS+G+SK + + A+ A+E D ++++E+G+ RE+EC Sbjct: 175 VEIIEKLKLPVFVKPANSGSSLGISKAKTRSEIIKALQKAWEIDSRIVIEEGLDVRELEC 234 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 ++GN AS GE+ ++D+Y YD+KY ++ ++++PA I +I+++I+ IA+++ + Sbjct: 235 GIIGNLKLTASEIGEVSYSTDWYDYDSKYSMDN--QIIIPADIDSQISEQIKDIAIRSCR 292 Query: 292 TLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L G ARVD FL N++ +NEINT+PGFT+ SM+P LW ASGL L+ +L++++ Sbjct: 293 ALNIYGFARVDFFLEKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDIS 352 >UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPX6_9FIRM Length = 370 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 220/369 (59%), Gaps = 23/369 (6%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS----RFDVVLLGIDKQGQWHVSDASNY 57 +KLRV + FGG S+EHEVS SA + A++++ R++V +GI K G+W + Sbjct: 5 KKLRVALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPE 64 Query: 58 LLNADDPAHIALRPSATSLAQV--PGKHEHQLIDAQNGQP-LPTVDVIFPIVHGTLGEDG 114 + A + A + + P + +H + ++GQ L +D+ P++HG GEDG Sbjct: 65 AM-----ADGSWEQGADCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDG 119 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA-- 172 ++QG+ +A +P+VG VLASA CMDK + ++ AG+ + + RA A Sbjct: 120 TIQGLFEMARIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVL 179 Query: 173 -EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 E+ LG P+FVKPAN GSSVG+SK A+D+A D KV++E+ I G+E+EC Sbjct: 180 DRAEAALGYPIFVKPANAGSSVGISKAADRAALDAALDVALREDDKVVLEEFIDGQEVEC 239 Query: 232 AVLGN-DNPQASTC---GEIVLTSDFYAYDTKYIDEDG-AKVVVPAAIAPEINDKIRAIA 286 A +GN D+P T GEI+ ++FY YD KY ++G ++ V+PA ++ E D+++A A Sbjct: 240 AAIGNPDDPANITTTRPGEILAGAEFYTYDDKY--KNGVSQTVIPAHLSEEKLDEVKAEA 297 Query: 287 VQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 +AY LGCAG++R D F+ V+ NE+NTLPGFT ISMYPKL + G+ + L+ R Sbjct: 298 RKAYLALGCAGLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLVDR 357 Query: 346 LIELALERH 354 L++LA+ R Sbjct: 358 LLQLAVRRR 366 >UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B158 Length = 342 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 202/363 (55%), Gaps = 34/363 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +V GG+S EH VS S NI DKS++D+ + GI K+G+W Y L + D Sbjct: 1 MKLLLVCGGQSTEHAVSRMSCVNIYKNADKSKYDIKIAGITKEGEW-------YDLVSTD 53 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + AT + +H L + DV+FP++HG GEDG++QG+L +A Sbjct: 54 FSSDSWLEGATKIT------DHFTF-------LKSFDVVFPVLHGQFGEDGTIQGLLEMA 100 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI---------SF--- 171 +P+VG V+AS MDK K+L A + P + + + + SF Sbjct: 101 QVPYVGCRVMASCTAMDKIYAKKLFDQAHIPQVPSLYVKKRYDDKLVVVDDEGRESFNVE 160 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 E+ + LG P FVK + GSSVG KV S + + A +D V+VE+ I E+EC Sbjct: 161 MEIYTHLGFPCFVKASRSGSSVGCYKVNSLTELLPRLHEAATYDRHVVVEKAINATELEC 220 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 AV+GND+ AS G+I+ +FY Y++KY DE A +PA + I D IR AV+A++ Sbjct: 221 AVIGNDDISASRVGQILPHGEFYTYESKYEDEQSA-TCIPARVDQSIQDYIRQAAVKAFK 279 Query: 292 TLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + G+AR D F + V +NEINT+PGFTNISMYP+L + +GL LI LI+LA Sbjct: 280 AVDGTGLARCDFFYDNDTGNVYLNEINTMPGFTNISMYPQLMKDAGLDTPALIDELIKLA 339 Query: 351 LER 353 L+R Sbjct: 340 LQR 342 >UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein vanA n=122 Tax=Bacteria RepID=VANA_ENTFC Length = 343 Score = 234 bits (596), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 133/359 (37%), Positives = 205/359 (57%), Gaps = 24/359 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ L P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 61 NDNCYSAVLSPD---------KKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDR------PVAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNS-- 223 Query: 240 QASTCGE---IVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTL 293 A GE I L + + E G++ + VPA ++ E +I+ A + Y+ L Sbjct: 224 AALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKAL 283 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 GC G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 284 GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLALK 342 >UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUG2_ALKMQ Length = 358 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 215/362 (59%), Gaps = 26/362 (7%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K V ++ GGKS EH VSL SA I++++DK ++ V + I +G W SN + D Sbjct: 2 KTNVYVLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIW-----SNLGIVED 56 Query: 63 DPAHIA---LRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + I+ + S T ++ + E L + N + +++FP +HGT GEDG++QG+ Sbjct: 57 EIKEISELMYQSSNTVISSI----ETFLRSSFNEREQ---NIVFPALHGTNGEDGTIQGL 109 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN------ISFAE 173 L + ++P+VG+ V++SA +DK VTK L A NI P TR +H S Sbjct: 110 LEILDIPYVGNGVMSSAIGIDKVVTKDLF--AKHNI-PQGKYTRLLQHQWKKDKLFSIER 166 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 +E +G P +VKPA+ GSSVG+++ + E+ A+ AF F+ K+++E+ I GRE++ +V Sbjct: 167 IEETIGYPAYVKPASLGSSVGINRCANREELEAAIHEAFSFEDKLVIEEEIIGREMQISV 226 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 +GN+ P+AS GE + F Y KY D + V+PA + ++++ +R +A++++ L Sbjct: 227 VGNEFPKASVVGEFIQERQFMDYAAKYTDGKLIQ-VIPAKLTEKVSELMREVAIKSFDVL 285 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASG-LGYTDLITRLIELALE 352 C+G+ RVD F+T + +NE+NT+PGFT +SM P LW+ + Y +LI +LI LA E Sbjct: 286 NCSGLVRVDYFVTDDERFYVNEVNTMPGFTKLSMTPALWEKTDQTTYPELIEKLINLAFE 345 Query: 353 RH 354 R+ Sbjct: 346 RY 347 >UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes RepID=D2LR31_BACS4 Length = 404 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 223/374 (59%), Gaps = 30/374 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV ++FGG S EHEVS+ SA + +D+SR++++ + I K+G W+ D LL+ + Sbjct: 9 RTRVAVIFGGMSVEHEVSVISALQAIQNMDESRYEIIPVYISKEGAWYTGDT---LLDIE 65 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP------LPTVDVIFPIVHGTLGEDGSL 116 + ++ + + Q+ + ++++I + +P + +DV FPIVHGT EDG L Sbjct: 66 EYKNLKGLLAKSQRIQLLREGDNRVIINKEPKPKFGKAYINEIDVAFPIVHGTFAEDGVL 125 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL--TRANRHNISFA-E 173 QG L + LP+VG DV++S+ MDK + K + RD+GL I ++ T+ N + Sbjct: 126 QGYLELLGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYVWFYSTKWNEDQDELVKK 185 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECA 232 VE KL P+ VKPAN GSSVG+SK + ++ AV+LA +F +K+++E+ ++ EI C+ Sbjct: 186 VEGKLQYPVIVKPANLGSSVGISKAANVDELEEAVELASQFANKIVIEKMVQNMTEINCS 245 Query: 233 VLGN-DNPQASTCGEIVLTSDFYAYDTKYIDE-----------DGAKVVVPAAIAPEIND 280 VLG+ + +AS C +++ + +Y+ KY + ++PA I+ E Sbjct: 246 VLGDYEAAEASVCEQVLGNDEILSYEDKYAGGGSKGGGASKGMESTNRIIPADISEEKTK 305 Query: 281 KIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGY 339 +I+ +AV A+Q LGC+G++R+D + + N V INEINT+PG ++S Y LW+ +G Y Sbjct: 306 EIQELAVAAFQVLGCSGVSRIDFLIDNDTNNVFINEINTIPG--SLSFY--LWEPTGKPY 361 Query: 340 TDLITRLIELALER 353 +L LI+LAL+R Sbjct: 362 KELTNDLIQLALKR 375 >UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaerobacteraceae RepID=DDL_THETN Length = 389 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 212/376 (56%), Gaps = 38/376 (10%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS----DASNY-- 57 L+V ++FGGKS EHEVS+ + +++ ++K +++ + + + + G+W+ D SNY Sbjct: 2 LKVAVMFGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKGLLDISNYKD 61 Query: 58 ---LLNADDPAHIALRPSATSLAQVPGKH-----EHQLIDAQNGQPLPTVDVIFPIVHGT 109 LL + + P L P + E+ ID VDVIFP HGT Sbjct: 62 IPSLLKKCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYID---------VDVIFPAFHGT 112 Query: 110 LGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI 169 GEDG++QG+ ++AN+P+VGS V+ SA MDK + K + + L I ++ R Sbjct: 113 HGEDGTMQGLFQLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKN 172 Query: 170 SFAE---VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG 226 A +ESKL P+FVKPAN GSS+G+SK + ++ A+++A +D K+IVE+ +K Sbjct: 173 KEAMLDLIESKLKYPMFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDRKIIVEEAVKD 232 Query: 227 -REIECAVLGND-NPQASTCGEIVLTSDFYAYDTKYI-DEDGAK----VVVPAAIAPEIN 279 E+ C+V+G D + + S C V +F +Y KY+ E G K +PA I E Sbjct: 233 PMEVNCSVMGIDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKT 292 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLG 338 +I+ +A + +Q L C+G+AR+D L E +V +NEINT+PG + + Y LW+ G+ Sbjct: 293 KEIQELAKKVFQILDCSGLARIDFLLEKETMKVYVNEINTIPG--SFAFY--LWKPLGIS 348 Query: 339 YTDLITRLIELALERH 354 + LI RLIE A+ERH Sbjct: 349 FEKLIDRLIEYAVERH 364 >UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria RepID=C3RJR8_9MOLU Length = 346 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 211/364 (57%), Gaps = 32/364 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ ++ GG+S+EH VS S ++++ +D +++++ L+GID G WH DA Sbjct: 2 KQKLLVLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQ-----T 56 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D A +++ + V G ++Q DV FP++HG GEDG++QG+ + Sbjct: 57 DLAKNTWLDNSSMVEDVYGLLKNQ-------------DVAFPVLHGMYGEDGTIQGLFEL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI-----SFAEVES- 176 A LP+VG V+ S+ MDK TK++L G+ + + + + +F E+E Sbjct: 104 AKLPYVGCRVMGSSVAMDKIYTKKILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEI 163 Query: 177 ------KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 +LG+P F+K + GSSVG + ++ + + A ++D V+VE+ I E+E Sbjct: 164 EDYIVRELGMPCFIKASRSGSSVGCYRCDNQTELIGKLSEAAKYDRHVVVEECIDCIELE 223 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 AVLGND+ S G+I+ +FY +++KY DE+ +K +PA + +I ++IR A++ + Sbjct: 224 TAVLGNDDVIVSRVGQIMPHGEFYTFESKYEDEE-SKTCIPALVDEQIQEQIRQYAIKVF 282 Query: 291 QTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + + G++RVD FL + N++ +NEINT+PGFT ISMYP+L G+ Y +L+ RLI L Sbjct: 283 KAVDGHGLSRVDFFLDKKTNKIYLNEINTMPGFTKISMYPQLMNDFGITYPELLDRLIVL 342 Query: 350 ALER 353 AL++ Sbjct: 343 ALQK 346 >UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AC0 Length = 357 Score = 223 bits (568), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 208/371 (56%), Gaps = 24/371 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW-----HVSDAS 55 M K++ ++FGG S EH++SL SA ++ I + +++V+ +GI ++G+W V D Sbjct: 1 MAKIKAAVIFGGTSREHKLSLASAAEVIRNIPEDKYEVICIGITRKGRWLYFPGDVEDIP 60 Query: 56 NYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPL-PTVDVIFPIVHGTLGEDG 114 D P TS P +I +NG+ + +DV+FP+V G G DG Sbjct: 61 TGEWEQD--------PDCTSAIISPDPLHRGIILIENGEAVVRKIDVVFPVVMGKHGADG 112 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS--FA 172 ++QG+L ++ +P+VG VLA+A+CMDK ++ D + A + +T+ I Sbjct: 113 TIQGLLDLSGIPYVGCGVLAAASCMDKSHIHMVMDDYDIATADWRIITQREISEIDKRCH 172 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 E+ +LG PL VKPA G+S G K Q AV +AF D+KV+VE+ + GR++E A Sbjct: 173 EIAGELGFPLIVKPAKSGTSAGTGKADDLAQLIAAVKVAFSNDNKVVVEKYVSGRKMEAA 232 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDED-GAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V G D P ++ GEI L D YD +++ G + +PA I+ E+ IR AV+AY+ Sbjct: 233 VFGYDTPFSTYIGEI-LDPD-RVYDPTEVNQSTGDGLKIPADISDELQASIRETAVKAYK 290 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 +GC G+AR+D FLT + +++N+I T PG S++PKL + G+ + D + L+E A+ Sbjct: 291 AMGCKGLARLDFFLTDDGRLLLNKIGTSPGLRKNSVFPKLMEHMGISHEDFVDMLLEQAI 350 Query: 352 ERHAADNALKT 362 DNA +T Sbjct: 351 -----DNAERT 356 >UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=C1YHT6_NOCDA Length = 374 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 215/368 (58%), Gaps = 22/368 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS--DASNYLLN 60 K+RV +VFGG+S+EHE+S +A +++ +D R+++V +GI + G W ++ D + ++ Sbjct: 7 KIRVAVVFGGRSSEHEISCVTAGSVLSVVDHDRYEIVPVGITRTGNWVLTSGDPESLRID 66 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQL--IDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQ 117 A A ++ LA +P QL +D G + L VDV+ P++HG GEDG++Q Sbjct: 67 AGTRALPSVSEDGVDLA-LPFDSAGQLMVVDPVKGPERLAGVDVVLPLLHGPFGEDGTIQ 125 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT----RANRHNISFAE 173 G+ + + + G+ V +S+A MDK K +LR G+ + F+ +T R R + + Sbjct: 126 GLFEMMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFVAITDRQWRTERKRV--LD 183 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAF---EFDHKVIVEQGIKGREIE 230 ++LG +FVKPA GSSVG+SKV V E D KV+VE + GRE+E Sbjct: 184 DVAELGATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREHDPKVLVEAQVVGREVE 243 Query: 231 CAVLGNDN---PQASTCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 C VL +++ P S E+ + DFY ++ KY+ + + +PA + E ++RA+ Sbjct: 244 CGVLESEDGGTPDVSLPAEVHVADGFDFYDFEAKYLST--SSLTIPAELPEEATARLRAL 301 Query: 286 AVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 A + ++ +GC G+ARVD F T + ++++NE+NT+PGFT S +P++W A+G+ Y L+ R Sbjct: 302 AAEVFEAMGCEGLARVDFFYTEDGDILVNELNTMPGFTPASAFPQMWAATGVDYAALVER 361 Query: 346 LIELALER 353 +I AL R Sbjct: 362 MISTALRR 369 >UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho africanus TCF52B RepID=DDL_THEAB Length = 367 Score = 223 bits (568), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 121/352 (34%), Positives = 198/352 (56%), Gaps = 12/352 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + VG++FG KS EHE+S+ +A ++ +DK++++++ + I K G+W L N + Sbjct: 2 INVGLLFGSKSVEHEISIITAHQVLSFVDKNKYNIIPIYITKDGKWLTGKILEDLENFKN 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L + ++ + K + +LI N + + T+DV HG+ GEDGS+QGML Sbjct: 62 LER--LEKKSKQISSISAK-DGKLILHSNIKKI-TIDVCLLTFHGSNGEDGSIQGMLEFL 117 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 N+P+ G + +S MDK +TK +L++ + + F+ + N N + L P+ Sbjct: 118 NVPYTGCGMYSSMYTMDKVITKLILKEKNIPVVDFLYTNKKNYTNDFLNHCKEVLEYPMI 177 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKPA GSS+GV KV + + A++ AF FD KVIVE+ I RE+ CAV+G N S Sbjct: 178 VKPARLGSSIGVKKVNDKCELEEAIETAFSFDDKVIVEKWIDSRELNCAVMGYKNIVVSE 237 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKV---VVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI DF+ Y+ KY+ + G K ++PA I + + I++IA + L C G R Sbjct: 238 IEEIKKQKDFFDYNEKYV-QKGKKFSNHIIPAPIDENLKNTIKSIARDTFNALECHGNIR 296 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +D L+ +N++ +NE+N++PG +S Y LWQ SG ++ +I +I +A E Sbjct: 297 IDFLLSKDNKIYVNEVNSIPG--ALSYY--LWQMSGFTFSQVIDNMISIAFE 344 >UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho melanesiensis BI429 RepID=DDL_THEM4 Length = 361 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 193/353 (54%), Gaps = 16/353 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L +GI FG KS EHE+S+ +A+ ++ +ID+ +++V+ + I K G+W L D Sbjct: 2 LNIGIFFGSKSVEHEISIITAQQVLSSIDRKKYNVIPIYISKSGEWFTGKVLEDLETFKD 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + V ++ + + G T+D F + HGT GEDG+ QGM + Sbjct: 62 FDKLEKKAKKIDSFSV----KNNKLLLKYGLKKQTIDFCFLVFHGTNGEDGTFQGMCEIF 117 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ G + +SA MDK VTK LL++ +++ F T N F E LG P+ Sbjct: 118 GIPYSGCNHFSSAFTMDKVVTKLLLKEKEISVVDFEYTTEINEE--FFKRCEKNLGYPMI 175 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKPA GSS+GVSKV + + AV FD+KV+VE+ I REI CAV+G N S Sbjct: 176 VKPARLGSSIGVSKVVDRKNFEEAVKNVLLFDNKVLVEKWINAREINCAVMGYKNIFVSE 235 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKV---VVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI +DF+ ++ KY + G K ++PA I + +KI+ IA ++ L C+G R Sbjct: 236 LEEINKKNDFFNFEEKYF-KKGKKFSNHIIPARIDENLKNKIKEIAKDTFKILECSGNVR 294 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +D + +++ +NEINT+PG +S Y +WQ SG ++ +I +I + LER Sbjct: 295 IDFLIA--DKIYVNEINTIPG--ALSFY--IWQKSGFTFSQIIDNMINMGLER 341 >UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AVY8_9BACE Length = 398 Score = 217 bits (553), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 135/385 (35%), Positives = 215/385 (55%), Gaps = 34/385 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDA----SNY- 57 K RV ++FGGKS EHEVS+ S ++D ++DV+ + + K + ++ D+ +Y Sbjct: 7 KTRVAMMFGGKSVEHEVSVISGIQAYMSMDTDKYDVIPVYMTKNNEMYIGDSIGDIESYK 66 Query: 58 ----LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGED 113 LL + L Q P K + ++ +DV FP+VHGT ED Sbjct: 67 NIDELLKKSQRVIMINEDGRVKLVQYPVKKLGKNVEV-------GIDVAFPVVHGTNVED 119 Query: 114 GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNI--APFITLTRANRHNISF 171 G QG L+ +PFVG DV ASA MDK +TK +L+++ + + A TL+ Sbjct: 120 GGFQGYLKTMGIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDARLYTLSDYADMESMM 179 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIE 230 ++E+ G P+ VKP N GSSVG+S S + A +VD AF + KV+VE I REI Sbjct: 180 NDIENVFGYPVIVKPVNLGSSVGISVAKSRVELANSVDDAFRYATKVLVEHAITNLREIN 239 Query: 231 CAVLGNDNPQ-ASTCGEIVLTSDFYAYDTKYIDE---DGAKVV------VPAAIAPEIND 280 C+VLG++N AS C E + T D +Y+ KY+ G+K + +PA + PE + Sbjct: 240 CSVLGDENDAIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMASVSRRIPAELTPEKRE 299 Query: 281 KIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGY 339 ++R +AV++++ LGC G++R+D + + +++ NEINT+PG +++ Y LW+ G+ Y Sbjct: 300 EVRELAVRSFKALGCNGVSRIDFMIDADTDKLYFNEINTIPG--SLAFY--LWEPVGVPY 355 Query: 340 TDLITRLIELALERHAADNALKTTM 364 +L+ R+I+LAL+R + +L T Sbjct: 356 KELLDRMIQLALKRERTEESLTFTF 380 >UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BAK0_9FIRM Length = 320 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 193/338 (57%), Gaps = 38/338 (11%) Query: 31 IDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD---DPAHIALRPSATSLAQVPGKHEHQL 87 +DK ++++ L+GI K G+W++ + L+ D D A + V G L Sbjct: 4 LDKDKYEITLVGIAKDGKWYILKQEDNDLSKDTWLDGAEV-----------VEGVF--NL 50 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + +Q DV FP++HG GEDG++QG+ +A LP+VG V AS+ACMDK K++ Sbjct: 51 LRSQ--------DVAFPVLHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKV 102 Query: 148 LRDAGLNIAPFITLTRANRHNISFAE------------VESKLGLPLFVKPANQGSSVGV 195 AG+ + + + N + E + +LG+P F+K + GSSVG Sbjct: 103 FESAGIPQVKSVYVKKRNDGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGC 162 Query: 196 SKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + EE ++ A ++D ++VE+ + E+E AVLGND+ S G+I+ +FY Sbjct: 163 YRCDKEEDLMAKLEEAAKYDTHIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYT 222 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVIN 314 +++KY D + +K +PA + EI ++IR AV+A++ + G++RVD FL + N V +N Sbjct: 223 FESKYEDAE-SKTCIPAKVDEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLN 281 Query: 315 EINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 EINTLPGFT+ISMYP+L + G Y++L+ +LIE+A E Sbjct: 282 EINTLPGFTSISMYPQLMEDYGYSYSELLDKLIEIADE 319 >UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia RepID=DDL_BORHD Length = 365 Score = 214 bits (545), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 133/365 (36%), Positives = 208/365 (56%), Gaps = 23/365 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-SRFDVVLLGIDK-QGQWHVSDASNYL 58 M K + ++FGG S EHE+SL+SA I A+ K ++++ IDK G W++ D+ Sbjct: 1 MMKKNLMLIFGGVSFEHEISLRSAYGIYSALMKLDKYNLYPSFIDKITGIWYLLDS---- 56 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D + R S+ ++ +PG N + L +DV+FPIVHG GEDG++QG Sbjct: 57 --VPDAPELIKRDSSAIISLIPGCGIFV-----NDEDL-EIDVVFPIVHGRTGEDGAIQG 108 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN----RHNISFAEV 174 L++ ++P VG+ +L SA ++K K LL+ + + PFI + + + I ++ Sbjct: 109 FLKMMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIK-KDI 167 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 + L P+ VKPA GSS+G+S ++ Q ++ AFE+D V+VE+ +K REIEC+V+ Sbjct: 168 KQSLNYPVIVKPAMLGSSIGISIAYNDTQIEKCIEEAFEYDLTVVVEKFMKVREIECSVI 227 Query: 235 GNDNPQASTCGEIVLTSD-FYAYDTKYIDEDGAKVV--VPAAIAPEINDKIRAIAVQAYQ 291 GN+ + T GEIV+ FY YD KY G VV +PA + + I+ A Y+ Sbjct: 228 GNEQIKIFTPGEIVVQDFVFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYK 287 Query: 292 TLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L GMAR+D + + N + +NEINT+PGFT+ISM+ K+ + GL Y L+ L+ LA Sbjct: 288 CLELRGMARIDFLIEKDTNLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLVDNLVSLA 347 Query: 351 LERHA 355 + +A Sbjct: 348 FQSYA 352 >UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 Tax=Enterococcus RepID=VANC_ENTGA Length = 343 Score = 214 bits (545), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 122/352 (34%), Positives = 187/352 (53%), Gaps = 18/352 (5%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++FGG S E+ VSL SA +++ AID +++V+ +GI W+ + L N + Sbjct: 3 KIAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGN--LANVRND 60 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP----TVDVIFPIVHGTLGEDGSLQGML 120 + K+ HQL + G L DV+FP++HG GEDG +QG+L Sbjct: 61 TWLEDH-----------KNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLL 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + NLP+VG V ASA CM+K + +L G+ AP + L+R + G Sbjct: 110 ELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGF 169 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KP GSS G++KVT + A+ AF + V++++ I G EI C +LGN+ Sbjct: 170 PIFIKPNEAGSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQLT 229 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 C I L F+ ++ KY A + VPA + + +I+ A Y+ LG G+AR Sbjct: 230 IGACDAISLVDGFFDFEEKY-QLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLAR 288 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +D F+T + + +NEINT+PGFT S YP + GL Y L+ +LI LA E Sbjct: 289 IDFFVTNQGAIYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAEE 340 >UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia magna RepID=DDL_FINM2 Length = 350 Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 119/358 (33%), Positives = 209/358 (58%), Gaps = 17/358 (4%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 + +++GG S EHEVS+ SA+ +++ + K +++V + + + ++ + + + +D+ Sbjct: 5 IYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDE-- 62 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 + L + + V + I N P VIFP +HG+ GEDG++QG ++V +L Sbjct: 63 ELILDTDLSVIESV-----SECIRKIN----PENTVIFPAIHGSYGEDGTIQGFIKVLDL 113 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 PFVG +VL SA CMDK T + + A ++ L + + +N+ E+ K ++VK Sbjct: 114 PFVGCNVLGSALCMDKGYTNDIFELNKIPQAKYVVLCKNDDYNLK--EIFEKTSKAVYVK 171 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 P N GSSVGV + +EE+ A+ AF++D +++VE+ I G E++ AV+GNDNP AS G Sbjct: 172 PCNAGSSVGVMRAETEEELEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPG 231 Query: 246 EIVLTS-DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + +F+ YD KY D +++ P + ++ K R +A + Y+ + +G +RVD+F Sbjct: 232 VYQIHDVEFFDYDAKYND-SKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMF 290 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASG-LGYTDLITRLIELALERHAADNALK 361 + +NE+ +NEINT+PG T SM+P LW+ + + +++ LI LA+E + + A K Sbjct: 291 VK-DNELWVNEINTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLAVEEYKKNKAYK 347 >UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0A6_ERYRH Length = 338 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/351 (35%), Positives = 201/351 (57%), Gaps = 19/351 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL+V +VFG ++EH++S+ SA ++++ K +FD V L I K G+W+ + + ++ Sbjct: 1 MNKLQVALVFGSINSEHDISVASAASVLEHFPKEKFDCVPLYIGKDGKWYTGNYTLDMMQ 60 Query: 61 ADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ H L PG I A + LP VDV F ++HG +GE G +QG+ Sbjct: 61 SNKLEGHRELYLQFN--YDRPG-----FIYADDQSLLP-VDVAFLMLHGRMGEGGQVQGL 112 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L+ AN+PF G DVL+SA CMDK T + AG+++A + +T N +I F +VE Sbjct: 113 LKCANIPFTGCDVLSSALCMDKGFTHIICEAAGIDMAAYQLITHIN--DIDFEKVE---- 166 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P VKP+ +GSS GVS V + ++ A AFEFD +V++E IKG E+ +L D Sbjct: 167 YPCIVKPSREGSSFGVSYVRNYDELLNACLFAFEFDSRVLIEAYIKGTEVGLGILKTDQE 226 Query: 240 Q-ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE-INDKIRAIAVQAYQTLGCAG 297 S ++ ++ + + + KY A +P + PE + +++ + A+ L CA Sbjct: 227 LIVSEVDQVNVSGEVFDFQEKY--HPHATETLPVSTFPESVRKEVQRLGELAFNVLDCAQ 284 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 +R+D F+T ++ + +NE+NT+PGFT+ S YP + +G+ Y +LIT++IE Sbjct: 285 FSRLDFFVTEDHRIFLNEVNTIPGFTSSSRYPGMLDRAGVSYPELITKMIE 335 >UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLF9_9FIRM Length = 357 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 115/364 (31%), Positives = 207/364 (56%), Gaps = 24/364 (6%) Query: 8 IVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL----LNADD 63 +++GGKS EHE+S+ +AK++++ +D+ ++ + + +DK G+W NYL N ++ Sbjct: 6 LLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRW------NYLGKNTKNIEN 59 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + + ++ +N + FP +HGT EDG++QG + Sbjct: 60 EKELVVEGFGNVADSISNFFAKDFVN-ENA-------IFFPAMHGTFSEDGTIQGFFDIM 111 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGL 180 +L +VG++VL+SA CMDK + G+ + +T+ ++ + K+G Sbjct: 112 DLTYVGNNVLSSAVCMDKGTANDVFAGNGILQPEYYLVTKYEFNKNKDLQIKNILEKIGE 171 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 F+KP N GSSVGV+KVT +E+ A+ AF++D++V+VE+ + G E++ V+GN+ + Sbjct: 172 VSFIKPCNAGSSVGVTKVTKKEEIEPALIEAFKYDNRVLVEEAVIGDELQVLVMGNNILK 231 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS G + +T +F+ Y+ KY DE ++P + E +I+++A +AY C G AR Sbjct: 232 ASLPGGVKVTREFFDYEAKYFDE-TTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFAR 290 Query: 301 VDVFLT-PENEVVINEINTLPGFTNISMYPKLWQAS-GLGYTDLITRLIELALERHAADN 358 VD+F+ + ++++NEINT+PG T +SM P ++ + Y+D + LIELA+E + Sbjct: 291 VDIFVRDSDRKMLVNEINTIPGMTAVSMAPAMYMKTFKKTYSDFLDELIELAVENKKEKD 350 Query: 359 ALKT 362 +L T Sbjct: 351 SLTT 354 >UniRef50_B0MP08 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MP08_9FIRM Length = 397 Score = 210 bits (534), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 209/375 (55%), Gaps = 21/375 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+RVG+ FGGKS EHEVS+ SA ++I+K +++V+ + I K + +V + + + Sbjct: 2 KIRVGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASYR 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQN--GQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + L GK + L + T+DV FPIVHGT EDG QG L Sbjct: 62 NLKSLLKESRRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGYL 121 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESK 177 + +P+VG DV++SA MDK V K + +D G+ + + A + A++++K Sbjct: 122 QTIGVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAK 181 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 + PL VKP N GSSVG+ ++EQ A+D AF + K++VE I +EI C+V G+ Sbjct: 182 IAYPLIVKPINLGSSVGIMIAHNDEQLDEALDNAFTYASKLLVEPAITNLKEINCSVCGD 241 Query: 237 -DNPQASTCGEIVLTSDFYAYDTKYIDEDGA---------KVVVPAAIAPEINDKIRAIA 286 AS C E V T + +Y KYI D K +PA I+ E ++IR +A Sbjct: 242 YATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTLA 301 Query: 287 VQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 V+A+++LG +G +R+D + +N V +NEINT+PG +++ Y LW+ G+ Y++L+ Sbjct: 302 VKAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG--SLAFY--LWEPVGVKYSELLDE 357 Query: 346 LIELALERHAADNAL 360 +I LAL+R + AL Sbjct: 358 MISLALKRERENKAL 372 >UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R862_9FIRM Length = 392 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 214/372 (57%), Gaps = 27/372 (7%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQ--WH-VSDASNYLL 59 +++V + FGG+S EHE+S+ SA ++ A++ +++V+ L I K G+ +H ++ Sbjct: 14 RIKVVVAFGGESVEHEISILSAHQVMQAMNPMKYEVIPLYIAKDGRLLYHPLNTELERFE 73 Query: 60 NAD----DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGS 115 N D + ++L+ P K+ + + D++FPI+HGT GEDG+ Sbjct: 74 NLDKVEREGYEVSLQRRGNRFYMCPNKYSFLRKEI-------SFDMVFPILHGTHGEDGT 126 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 QG L ++P++G VL A DK + K++L D+GL +AP+ T + +F Sbjct: 127 FQGYLSTLHIPYIGCSVLGGAIGQDKIIMKQILEDSGLPVAPWFYWTLLKPLDDTFFRKA 186 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVL 234 +LG PL VKPAN GSS+GV+KV +E + A+ A+++D +V++E+ I+ +EI CAVL Sbjct: 187 ERLGYPLIVKPANLGSSIGVAKVENEVELHRAMIEAYQYDGRVVIEKAIEHVQEINCAVL 246 Query: 235 GNDNP-QASTCGEIVLTSDFYAYDTKYIDEDGAKVVV------PAAIAPEINDKIRAIAV 287 G++ +AS E++ + D +Y KY+ +G K +V PA I E+ +I+ +A Sbjct: 247 GDEQTCEASVLEEVLSSKDILSYADKYVCGEGVKGIVNTRRCIPARIDEELALEIQTLAK 306 Query: 288 QAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + ++ L +G R+D E ++ INEINT+PG +++ Y LW+ S L + LI RL Sbjct: 307 ECFRCLCASGTGRIDFLYNRETKDLYINEINTIPG--SLAFY--LWEKSNLPFPKLIDRL 362 Query: 347 IELALERHAADN 358 +++A +R+A + Sbjct: 363 VQIAKKRYAQEQ 374 >UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT22_9FIRM Length = 390 Score = 207 bits (526), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 206/372 (55%), Gaps = 31/372 (8%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 V +VFGG S EHEVS+ + +++ +DK +F+ + + I K+G+++ S +L Sbjct: 2 FNVAVVFGGISVEHEVSVITGLQVIENLDKEQFNPIPIYISKEGRFY----SGEMLKDFK 57 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQ-----------NGQPLPTVDVIFPIVHGTLGE 112 AT + +P K + L + +D IFP +HGT GE Sbjct: 58 TYKEGKYREATEVFIIPQKGDRFLYSTKVVGGIFKKTHTENYIYARIDAIFPALHGTFGE 117 Query: 113 DGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI-SF 171 DG++QG+ N+P+VG VLA A MDK + K + + + + + R+ ++ S Sbjct: 118 DGAIQGLFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPVVDYTYFYRSELKDLQSV 177 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIE 230 + KLG PL VKPAN GSS+G+SKV + A+++A +D K+IVE+ + REI Sbjct: 178 LKKCEKLGYPLIVKPANLGSSIGISKVKDTLELTKALEVASNYDKKIIVEKCLTDHREIN 237 Query: 231 CAVLGN-DNPQASTCGEIVLTSDFYAYDTKYI--------DEDGAKVVVPAAIAPEINDK 281 AVLG+ D+ + S C E + D Y KY+ ++ K +PA ++ E+++K Sbjct: 238 VAVLGDQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMASQENQKKKLPADLSKEVHNK 297 Query: 282 IRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTD 341 I +A ++++ + G++R+D FL +EV +NEINTLPG +I+ Y L++ GL + D Sbjct: 298 ICQLAKESFKAIDATGVSRID-FLLKNDEVYVNEINTLPG--SIAFY--LFEVEGLSFKD 352 Query: 342 LITRLIELALER 353 L+T+L+E+A++R Sbjct: 353 LLTKLLEIAIKR 364 >UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteobacteria RepID=DDL_SYNFM Length = 311 Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 126/353 (35%), Positives = 194/353 (54%), Gaps = 48/353 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EKL V ++ GG SAE EVSL+S + + +A+DK R YL+ Sbjct: 4 EKLTVALLSGGASAEREVSLKSGEQVFNALDKQR---------------------YLVLR 42 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 DPAH R +A DA+ +DV I+HG +GEDG++QG+L Sbjct: 43 YDPAHDLTRLAA---------------DAEK------IDVALIILHGRMGEDGTIQGLLE 81 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 +P+ GS VL SA M+K ++K+L AGL +AP + R R V +LGLP Sbjct: 82 SLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADR--REPPDLDTVADRLGLP 139 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP ++GSS+G+S V + +Q A AV+ +++D + ++E+ + G EI VLGND+ QA Sbjct: 140 VVVKPEHEGSSIGLSIVRNRDQLAAAVETGWQYDRRCLIEKYVHGIEITGGVLGNDHLQA 199 Query: 242 STCGEIV--LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EI+ +F+ Y KY ++ + PA ++ I K + A +A+Q L C G + Sbjct: 200 LPLIEIIPGEAYEFFDYKAKYT-PGASREICPARLSDTITAKAQEYARKAHQALCCKGYS 258 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R D+ ++ N++ I E NT+PG T S++P+ +G+ ++ L+ RLIELALE Sbjct: 259 RTDMIVS-GNDIFILETNTIPGMTATSLFPQAAAVAGISFSALLDRLIELALE 310 >UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS09_SYNAS Length = 355 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/361 (33%), Positives = 192/361 (53%), Gaps = 19/361 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KLRVGI+ G S+E EVSL+S +NI ID+ ++ + + +D SDA+ + + Sbjct: 8 KLRVGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMD-------SDAALWEIPLK 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 R LA+ + ++ + + VD++F +HG GEDG +QG+L + Sbjct: 61 LLMRNCTRDVEEDLAEEAVRVPYEELKTR-------VDLVFLALHGKYGEDGCMQGLLEL 113 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA----NRHNISFAEVESKL 178 +P+ GS VLASA MDK ++R+L G+++ + + R N F +E ++ Sbjct: 114 LKIPYTGSGVLASALGMDKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQEI 173 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P VKP+ +G S GV KV S + A++ AF +D +VE+ I G E+ C +LG + Sbjct: 174 GFPCVVKPSREGCSTGVKKVMSRAGLSDALNGAFLWDCTALVEEFIDGMEVTCGILGGNP 233 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P A T E + TSD + + K++ G PA + E KI+ +AV+A++ L G Sbjct: 234 PTALTPSETIATSDVLSLEDKFLYGQGEN-KTPARLPGETLMKIQEVAVKAFEALDLKGY 292 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 AR+D+F+T V++ E NT PG T ++ ASG+ T L+ R++E AL HA Sbjct: 293 ARIDMFVTSAGRVLVLEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAALSVHAGKK 352 Query: 359 A 359 Sbjct: 353 G 353 >UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus RepID=C7RG73_ANAPD Length = 345 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/352 (33%), Positives = 198/352 (56%), Gaps = 13/352 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + V I+ GG S+EH++SL+SA NI +++ ++ + L+ I+K+G + S+A + ++ D+ Sbjct: 2 INVYILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAY--SEAFD-KIDTDN 58 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + + K + + + ++ P VHGT GEDG++Q +L V Sbjct: 59 EFDLV-----KEVKENKTKSIADFLTCLSKEDYSKT-IVIPAVHGTYGEDGTIQALLDVI 112 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE-VESKLGLPL 182 + ++G+ +L+SA CMDK + + L+ A ++ T + + FA+ ++GLPL Sbjct: 113 GIAYIGNGLLSSAICMDKVTSNDIFEKNKLSQAKYL-YTNKDGFDSDFADRCIEEIGLPL 171 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 VKP+ GSSVGVSKVT++ + A D A ++D KV+VE+ I+G+EIE AV+G NP S Sbjct: 172 IVKPSANGSSVGVSKVTNKNELLAAGDEALKYDKKVLVEELIEGQEIEFAVVGYMNPDVS 231 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 + F YD KY + K +P + E ++ + +AY+ GC G ARVD Sbjct: 232 EPAAYISDHTFLDYDAKYFSK-STKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVD 290 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQ-ASGLGYTDLITRLIELALER 353 +FL +N +NEINT PGFT S + +L + +++++ RLI+ ER Sbjct: 291 IFLGKDNNFYVNEINTFPGFTPSSFFARLCELMYNESFSEVLDRLIKDGFER 342 >UniRef50_C0VTV5 D-alanyl-alanine synthetase A n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VTV5_9CORY Length = 315 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 128/321 (39%), Positives = 186/321 (57%), Gaps = 24/321 (7%) Query: 37 DVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPL 96 DV +GI + G W DP H+ ++ + H++++ + + L Sbjct: 8 DVFPVGITRDGTW----------TTGDPRHMTETLPEVTVEREVFLHKNEIRLLETSEVL 57 Query: 97 PTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIA 156 TVDVIFP++HG GEDG++QG+ ++ +P+VG+ VLASA MDK TK+L + AGL I Sbjct: 58 ATVDVIFPVLHGLNGEDGTIQGLFELSGVPYVGNGVLASACGMDKQYTKKLCKLAGLPIG 117 Query: 157 PFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH 216 + L + L P++VKPA GSS+G+S+V A+ LA E D Sbjct: 118 KDLVLEGGEEF------IPGTLNFPVYVKPARGGSSIGISRVEDVSGIDEAIRLARESDP 171 Query: 217 KVIVEQGIKGREIECAVLGNDNPQ--ASTCGEIVLTSD----FYAYDTKYIDEDGAKVVV 270 KVI+E+ IKG E+EC VL + + A+ E++ T D FY + KY+D + Sbjct: 172 KVIIEEEIKGIEVECGVLEYPDGRVVAAAPAELIGTEDGEAGFYDFSAKYLDGQ-VSAHI 230 Query: 271 PAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPK 330 PA ++ E +++ IAVQ ++ L C G+ARVD F+T E+ VINEINTLPGFT ISMYP+ Sbjct: 231 PARLSEEETARVKEIAVQTFKALNCNGLARVDFFVT-EHGPVINEINTLPGFTPISMYPQ 289 Query: 331 LWQASGLGYTDLITRLIELAL 351 ++QA G+ Y DL+ LIE AL Sbjct: 290 VFQAEGISYGDLLHILIEQAL 310 >UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria RepID=DDL_PELTS Length = 318 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 117/353 (33%), Positives = 187/353 (52%), Gaps = 48/353 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L+VG++ GG+S+E EVSL++ + + +A+ NYL D Sbjct: 3 LKVGVLMGGRSSEREVSLKTGEAVYNALK---------------------VKNYLAVKID 41 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L V E + +D+ F +HG GEDG++QG+L + Sbjct: 42 ----------VGLDVVERIKEER------------IDLAFIALHGRYGEDGTIQGLLEML 79 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK----LG 179 ++P+ GS VLASA MDK TK++++ GL PF+ + + S + +G Sbjct: 80 DIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKKEALKESLQACSERICREMG 139 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 LPL VK QGS++G+S V EE A A++LA+++D +VEQ I+G E+ ++LGN+ P Sbjct: 140 LPLVVKAPTQGSTIGMSFVHKEEDMAGALELAYDYDPVALVEQFIRGTEVTASILGNEEP 199 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A EIV + Y Y KY + ++P I + + I+ +AV +++LGC G+A Sbjct: 200 VALPLIEIVSATGVYDYKAKY-TAGMSDHIIPPRIPEKQQNAIKKLAVSTFKSLGCRGLA 258 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVD + + I E+NT+PG T S++P +A+G+ + DLI +L+ELA+E Sbjct: 259 RVDFIVDKQGNPFILEVNTIPGMTATSLFPDAARAAGIEFPDLIEKLVELAME 311 >UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW8_CRYCD Length = 313 Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/353 (33%), Positives = 183/353 (51%), Gaps = 46/353 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++++V ++ GG S E E+SL S + DA+ ++ F V +L K+ Sbjct: 6 QQMKVALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAKK--------------- 50 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 DD A + +P DV F +HG GEDG++QG L Sbjct: 51 DDLAQLVSQP---------------------------FDVAFLCLHGRGGEDGAIQGFLE 83 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 LP++G + +SA MDK K R+ G+ ITL R ++ A V ++LG Sbjct: 84 TIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHR--NESVDAATVIAQLGNH 141 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKPA +GS++GVS + A+ AF+ D+ V++E + G E+ AV+GN+N A Sbjct: 142 LVVKPATEGSALGVSIIEGPSALDRALTEAFKLDNAVLIETFMAGTELTVAVIGNENASA 201 Query: 242 STCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EIV +FY +++KY DG++ + PA + E ++ +AVQA++ LGC G++R Sbjct: 202 LPVIEIVPQLGEFYDFESKYA-ADGSQHICPARLTDEQTTAVQQVAVQAHKALGCCGVSR 260 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 DV L + + E NT+PG T S+ P +A+G+ + L TRLIELALER Sbjct: 261 SDVILAADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQLCTRLIELALER 313 >UniRef50_A4Y6E2 D-alanine--D-alanine ligase n=18 Tax=Shewanella RepID=DDL_SHEPC Length = 337 Score = 186 bits (473), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 189/355 (53%), Gaps = 26/355 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M ++ + ++ GG SAEH++SL SA ++ KS +F V+ + +DK GQ+ Sbjct: 1 MSRINLLLLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQY---------- 50 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 R +A ++ E + D + P P VD + P +HG GE G +Q Sbjct: 51 ----------RTAAGDDCELTNNREIRFRD-ETKAPWP-VDYVIPCIHGYPGETGDIQSY 98 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 + LP+ G + AS+ C +K K G+ P+I L + + IS A+ Sbjct: 99 FNLIQLPYFGCESEASSNCFNKITAKMWFSALGIPNTPYIFLHQYDDEAISQAQTALANW 158 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 +F+K A+QGSSVG KV + A + AF + V+VE+ IK RE+E AV N Sbjct: 159 GSIFIKAASQGSSVGCYKVDDSSKVAQVLKDAFGYAPYVVVEKTIKARELEVAVYEYNGE 218 Query: 239 PQASTCGEIVL-TSDFYAYDTKYIDEDGAKV-VVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A+ GEI+ T+ FY +D KY A+ VV ++ E++++IRA A++A++ + Sbjct: 219 IVATLPGEIICDTNTFYTFDEKYAKSSKARTDVVAKDVSVELSEQIRAYAIKAFKGMKLR 278 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 ++R+D FLT ENE+++NEINT PG T ISM+PK+ Q G +T+ ++ +I L Sbjct: 279 HLSRIDFFLTAENEILLNEINTFPGSTPISMFPKMLQNHGHDFTEYLSLVINSQL 333 >UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermaceae RepID=Q2S0H9_SALRD Length = 434 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 131/390 (33%), Positives = 202/390 (51%), Gaps = 49/390 (12%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 E L+VGIV GG + EHEVS+ +A A+D+ R+ V + + K G W+ DA LL Sbjct: 20 EPLQVGIVLGGVAPEHEVSVITALQAAAALDRDRYTPVPIYVAKDGTWYTGDA---LLEV 76 Query: 62 DDPAHI-ALRPSA--TSLAQVPGKHEHQLIDAQNG------QPL--PTVDVIFPIVHGTL 110 + + ALR A +LA P H L D G +P +DV+ +HG Sbjct: 77 EAYRDLDALREDALPVALAPTPYGHLELLEDRAPGILKRLQRPALRRRIDVMLLGLHGGP 136 Query: 111 GEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRH 167 GE+G +QG+ N+P+ + V SA MDK ++KR+ R AG+ + F+ L A R Sbjct: 137 GENGGVQGLCETFNVPYTSAGVFGSALGMDKVMSKRVCRQAGIPVVDFVALREGEWAGRE 196 Query: 168 NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG- 226 + E E+ L PL VKPA GSS+G+++V + + A++ A +D KV+VE+ ++ Sbjct: 197 AAALDECEATLDYPLVVKPARCGSSIGIAQVNTRAELDAAIEDALRYDDKVVVEKAVEAL 256 Query: 227 REIECAVLGNDNPQASTCGEIVLTSD---FYAYDTKYIDEDGAKV--------------- 268 REI C+VLG+ + + E + SD + KY+ EDG Sbjct: 257 REINCSVLGDGHEATPSVLEEPVPSDDDAVLTFQDKYMREDGEAAKAEGGTKSAESSPEG 316 Query: 269 ------VVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN--EVVINEINTLP 320 +VPA ++ E + I+ +AV+ + CAG+ R+D F+ E+ V NEINT+P Sbjct: 317 MAAQDRIVPANLSDERTETIQDLAVRIFHQFECAGVVRID-FMIDESTGRVYFNEINTIP 375 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 G + S Y LW+ SG+ + L+ RL+ +A Sbjct: 376 G--SFSFY--LWEPSGVSFDALVDRLVTIA 401 >UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium RepID=C8W8J3_ATOPD Length = 319 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 117/353 (33%), Positives = 189/353 (53%), Gaps = 43/353 (12%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 ++KL V +V GG S EHE++++S K A+ ++ F + +D LL+ Sbjct: 6 LKKLHVAVVSGGWSDEHEIAMESGKQCAAALKEAGF----INVD-------------LLD 48 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +A + +LAQ G + DV++ +HG GEDG +QG+L Sbjct: 49 ------VAEKDFVVALAQ--GDY----------------DVVYVAMHGRFGEDGCIQGLL 84 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH-NISFAEVESKLG 179 + ++P+ S VLASA +K+++K + R AG+ I + + ++ LG Sbjct: 85 EILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPSGTVFTDEQVDKLIEDLG 144 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKP+ GSS GV++VTS E+ A+ LA E ++++E+ + G EI V+GNDNP Sbjct: 145 FPMFVKPSGNGSSYGVTRVTSREELPAALKLAGEQGERILIEECVVGTEITVPVIGNDNP 204 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A EIV +FY+ TKY + V+PA + P + + + +A++A+ LGC G++ Sbjct: 205 TALPIVEIVTGDEFYSIKTKY-EPASLHHVIPARLEPAVYARAQELAIKAHNALGCRGVS 263 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R D +T + E V+ E NT+PG T S+ P + G+ + +L TR IE ALE Sbjct: 264 RSDFIVTEDGEPVVLETNTIPGMTARSLLPDSARTGGIDFPELCTRFIEFALE 316 >UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SQZ6_PSYIN Length = 380 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/370 (31%), Positives = 195/370 (52%), Gaps = 16/370 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW----HVSDASNYL 58 +++V +VFGGKS EH+VS+ SA +I+ ID ++ V + K G + ++ L Sbjct: 5 RMKVAVVFGGKSTEHDVSIISAGHILANIDMEKYFVEPFYVKKDGTFADHQELTLCLENL 64 Query: 59 LNAD-DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 LN D A++ L + K D G D++FP++HG GEDG++Q Sbjct: 65 LNEHRDKIFPAMKEGEIELKKWIAKGTSS--DFLGGIAGKKFDIVFPVLHGLNGEDGTIQ 122 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEV 174 GML +P+VG V ASA C+DK+ TK + + + + + + + N + ++ Sbjct: 123 GMLEFMGVPYVGCGVSASAFCIDKEATKVICQVNDIPVMDYTAVKKYEWENSTENIINDI 182 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAV 233 + K+ P +VKPA GSS+G+S+ + + ++ AF++D KV+VEQG++ RE+ V Sbjct: 183 QKKMNYPFYVKPARLGSSIGISRAENTVELKTSLKDAFKYDCKVVVEQGVESPRELTVGV 242 Query: 234 LG-NDNPQASTCGEIVLTSDFY-AYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +G +D S GE S+ Y +D+KY + G K +VPA + I + I + ++ Sbjct: 243 MGIDDQVSLSAIGEFSRGSNLYFNFDSKY-GKTGHKGLVPAPLEENIQEIIEKYSHLIFK 301 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA- 350 +G AR+D FL ++V +NEINT+PGF + ++WQ G+ I + IE Sbjct: 302 KFELSGFARIDYFLCG-DKVYLNEINTMPGFETGDTFMRIWQNKGVDMQKFIDKAIEYGV 360 Query: 351 LERHAADNAL 360 L H+ L Sbjct: 361 LSFHSKSTRL 370 >UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=A9WQG6_RENSM Length = 365 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 182/363 (50%), Gaps = 50/363 (13%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 + ++ GG S+EH+VSL S++ A V ID G+W V Sbjct: 36 IAVIGGGVSSEHDVSLASSEGTRAAAAALGHRVHFFLIDSDGEWSVDG------------ 83 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 VPG + L + D+ P+VHG GEDG LQG L + Sbjct: 84 -------------VPGT-------TAAWEKLRSCDLAIPMVHGAGGEDGVLQGFLETVGV 123 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES-------KL 178 + GS VL+SA +DK VTK + G+ AP +T+ R ++ ++ K+ Sbjct: 124 SYFGSGVLSSAVGLDKQVTKLVAHTVGVRTAPGLTIDATLRDQLAETPDQAENLLKSAKI 183 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE--FDHKVIVEQGIKGREIECAVLGN 236 LP+FVKP GSS G+SKVT + A AV LA + V++E ++G+E++ VL Sbjct: 184 ELPVFVKPLRGGSSFGISKVTEQLNLADAVKLAAHGPVEQDVLIEPEVRGKEVDVGVL-- 241 Query: 237 DNPQAST----CGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 + P S C +++ S +F++ + KY + + +VPA I E + IRA A + Sbjct: 242 ELPDCSVIVGPCLQVLADSKEEFFSTEAKYSSTE-TRFLVPAPIGDEASAAIRAQAKAVF 300 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 LGC G+ARVD F+ + +NEINTLPGFT+ S P++W A+G+ Y L+ +IE A Sbjct: 301 TALGCRGLARVDFFVDDDGTATLNEINTLPGFTSHSQVPRIWAAAGVNYEGLVAIIIETA 360 Query: 351 LER 353 L R Sbjct: 361 LAR 363 >UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YDR1_DICT6 Length = 311 Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 102/353 (28%), Positives = 185/353 (52%), Gaps = 48/353 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++G++ G KS+E E++ ++A+NIV+A+ +D + + ID+ ++ A+ Sbjct: 1 MKIGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDENVVENIKKAN-------- 52 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 ++V HG GEDG++QG+L + Sbjct: 53 -----------------------------------INVAIISAHGKYGEDGTIQGLLELL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE---SKLGL 180 +P+VGS VLASA +DK + K++ + +I L++ + SKL Sbjct: 78 GIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELETKDLNNIVKNVSKLKK 137 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P +KPA QGS++G+S ++EE+ ++LAF++D +I+E+ IKG+EI + +NP Sbjct: 138 PWIIKPATQGSTIGLSLASTEEELLKGIELAFKYDENIIIEEYIKGKEITAGIYDINNPV 197 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI+ + FY Y+TKY + ++PA + E+ +K + + + A+Q LGC ++R Sbjct: 198 CLPLIEIIPKTGFYDYETKY-TPGLSDHIIPARLPKEVYEKAQGLGILAHQALGCRHLSR 256 Query: 301 VDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 VD+ + N + + E+NT+PG T S+YP+ +A G+ + +LI I+ L+ Sbjct: 257 VDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFPELIDSFIKATLK 309 >UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=5 Tax=Aquificales RepID=C0QUP4_PERMH Length = 303 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 119/351 (33%), Positives = 185/351 (52%), Gaps = 52/351 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL++ +++GG S+E E+S++S K + +A+ K F Q+ V D Sbjct: 1 MNKLKIALLYGGSSSEREISIKSGKAVENALKKLGF-----------QYSVFD------- 42 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 PA GK + I N P D+ F +HG +GEDG++QG+L Sbjct: 43 ---PAE--------------GKDFIKKITDYN----P--DLAFIALHGKIGEDGTIQGVL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + GSD+ SA CMDK +TK +L+ G+ + T+ ++ N + +LG Sbjct: 80 EFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVPEGYTIQNLDQIN------DLRLGY 133 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP ++GSS+GV V +E+Q AV + D KVI+E+ IKGREI +L N + Sbjct: 134 PVVVKPNSEGSSIGVKIVENEDQLGKAVGEILKIDSKVIIERFIKGREITVGIL---NGE 190 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI + FY Y KYI ++ + + PA I + KI+ A++ Y LGC G+AR Sbjct: 191 PLDIIEIKVKEGFYDYYNKYISQE-TEYICPAEIESSLYRKIQNTALKIYNILGCKGVAR 249 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 VD F+ +++ E+NT+PG T+ S+ PK G+ + LI ++IE AL Sbjct: 250 VD-FILDKDKPYFLEVNTIPGLTDHSLIPKAAAVKGINFESLILKIIEGAL 299 >UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE55_9FIRM Length = 312 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 120/352 (34%), Positives = 174/352 (49%), Gaps = 46/352 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ R+G+V GG S E EVSL + IV+A+ + +D V + +D Sbjct: 2 MKTKRIGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLDP--------------- 46 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +L PS Q+ DA V V+F VHG GEDG LQ +L Sbjct: 47 -------SLFPS-------------QIEDAG-------VKVVFNAVHGLYGEDGRLQAVL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS VL+SA M+K TKR+ G+ A + LT +R ++ KLG+ Sbjct: 80 EMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLTDKDRQTAK-QDIIRKLGI 138 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDN 238 P VKPA QGSS+GV+ V EE A++ AF + V+ E G+E+ V+ + N Sbjct: 139 PCVVKPAEQGSSIGVTIVKKEEDLDKALEEAFSYGKLVLAEAFFTGKEVAAGVMMDSSGN 198 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P A I DFY Y KY + PA + ++ AV+AY+ LGC+G+ Sbjct: 199 PIAMPLVLIEPHVDFYDYHNKYT-KGATTYTCPAPFDECLTKALQEEAVKAYKALGCSGV 257 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ARVD + E + E+NT+PG T S+ PK +A GL + DL +++E A Sbjct: 258 ARVDEMVDAEGNFICLEVNTIPGMTATSLVPKAAKAMGLSFPDLCEKILETA 309 >UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria RepID=DDL_GEOLS Length = 313 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 183/363 (50%), Gaps = 60/363 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ R+G++ GG SAE +VSL+S + A+ +D L + Sbjct: 6 LKQKRIGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDV----------------- 48 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +H LI + +D+ F +HG GEDG +QG+L Sbjct: 49 ---------------------RHNVALILREE-----KIDLAFIALHGRYGEDGCIQGLL 82 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS VLASA M K +K+ AGL I P+ T+ + +R N + GL Sbjct: 83 ELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQGDRCNAE----QLPFGL 138 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP +GSSVGV+ V E A+D AF +D V+VE+ IKG+E++ +L N Q Sbjct: 139 PVVVKPVQEGSSVGVTIVKKPEDLQAALDEAFRYDTLVLVEKYIKGQEVQVGILAN---Q 195 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EIV ++FY ++ KY D A+ + PA +A + K++ +QA+Q LGC G R Sbjct: 196 PIGAIEIVPKNEFYDFEAKYSD-GMAEHIFPARLAEPLYQKVQQQGLQAHQALGCDGYCR 254 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQ-ASGLGYTDLITRLIELALERHAADNA 359 VD +T + + E+NTLPG T +S+ P++ Q +GL + L+ E+ A A Sbjct: 255 VDFLVTENGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEALV--------EQIACSAA 306 Query: 360 LKT 362 LKT Sbjct: 307 LKT 309 >UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria RepID=DDLA_PSEAE Length = 346 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 192/360 (53%), Gaps = 34/360 (9%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL+V ++FGG S E +VS+ S ++ A+ + V+ + D ++ LL A Sbjct: 4 DKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAV-----------DTASGLLGA 52 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT------VDVIFPIVHGTLGEDGS 115 ++ + A+ + +VP + I Q L + VDV F +HG GEDG+ Sbjct: 53 EEERRLL----ASKVKEVPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGT 108 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 LQ +L + GS LASA MDKDV KRL AG+ A ++ + EV Sbjct: 109 LQALLDAGGFAYTGSGHLASAMAMDKDVAKRLFLAAGVETASWLMAPASEE------EVR 162 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 +LG PL VKP +QGS+VG+S V S+ + A++LA + +V++E+ + GRE+ VL Sbjct: 163 EQLGFPLVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVL- 221 Query: 236 NDNPQASTCGEIVLTS-DFYAYDTKYIDEDGA-KVVVPAAIAPEINDKIRAIAVQAYQTL 293 + QA GEI+L + + Y+ KY + GA + V PA + P I + + +A++ ++ L Sbjct: 222 --DDQALPVGEILLGGQEVFDYEHKY--QAGAVREVFPADLPPAIAAEAQRLALKVHRAL 277 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +G +R D L + + E+NTLPG T S+ P+ A+G+G+ +L R+ L +ER Sbjct: 278 KLSGYSRTDFRLDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIER 337 >UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MT57_9BACT Length = 331 Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 114/357 (31%), Positives = 184/357 (51%), Gaps = 33/357 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQ-WHVS--DASNY 57 M++L + ++ GG S+E E++LQSA I A+D +++D+ L ID G+ WH + D + Sbjct: 1 MKRLNIALMAGGDSSEREIALQSAAQIASALDPAKYDITL--IDLHGRDWHYTSPDGRQW 58 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 ++ +D + + G+H+ D ++HGT GE+G LQ Sbjct: 59 QVDKNDFS-----------ITIDGEHK-------------AFDYALILIHGTPGENGRLQ 94 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G L + +P+ + +S DK TKR + + G+ +A R +R I E+ Sbjct: 95 GYLDMMGIPYSSCSMTSSVVTFDKITTKRTVAEFGIPLARGFFFGRDSR--IDPKEIVRT 152 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GN 236 LGLP+FVKP GSS GV+KV SE AV AF ++++E+ I+GRE+ C +L Sbjct: 153 LGLPVFVKPNASGSSFGVTKVKSEADILPAVAEAFTESDEILIEECIQGREMGCGMLIAK 212 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 EIV +F+ Y+ KY + + PA IAPEI ++ + AY+ C Sbjct: 213 GREYIFPITEIVSKKEFFDYEAKYT-AGCSDEITPADIAPEIKAELNRLTALAYKACRCR 271 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ RVD +TPE + + EIN++PG + S+ PK + +G+ +L +IE +R Sbjct: 272 GVVRVDFIVTPEGKPYLIEINSIPGMSGGSIVPKQVREAGMTLGELYDLIIEDTYDR 328 >UniRef50_D2MND8 D-ala D-ala ligase N-terminal domain protein n=2 Tax=Erysipelotrichaceae RepID=D2MND8_9FIRM Length = 394 Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 123/395 (31%), Positives = 198/395 (50%), Gaps = 53/395 (13%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQ--------WHVSDA 54 KLRVG+ FGG+S EHEVS+ SA+ + A+DK +++V+ L + K + + V + Sbjct: 2 KLRVGVFFGGESVEHEVSIISAQQAIHALDKDKYEVIPLYVAKDRKIYYNPEKFFSVENF 61 Query: 55 SNY-----------LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIF 103 +N L+N + A+RP L Q + L T+D+ Sbjct: 62 TNLPALLKESIQVTLVNLGNEC--AIRPVHIGLFQ--------------KKTLGTIDLAI 105 Query: 104 PIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR 163 P++HGT GEDG++QG+ + +PF G D+ + DK K +L D L I P+ + Sbjct: 106 PVMHGTNGEDGTIQGLFEMLKIPFAGCDIYGAVIGQDKVFQKHILHDNHLPITPWFWVYG 165 Query: 164 AN--RHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVE 221 + + E + LG P+ +KPA GSS+G+S E+Y A +D K+I E Sbjct: 166 QDIETYQTQILEKVNSLGYPVILKPARTGSSIGISIAHDNEEYLDCFKDAMRYDEKIITE 225 Query: 222 QGIKG-REIECAVLGNDN-PQASTCGEIVLT-SDFYAYDTKYIDEDGAKVV--------V 270 + IK REI C+V+G+ +AS E+ + +D KY V Sbjct: 226 KVIKPMREINCSVIGDHTGSRASVLEEVTQQEKELLDFDKKYGSGGSKGKSGMAATSRQV 285 Query: 271 PAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYP 329 PA ++ E I+ +A ++ LG AG+ R+D + E ++ INEINT+PG +++ Y Sbjct: 286 PAPLSHEETKYIQQLAKDTFRVLGSAGVCRIDFIMDAETKKIYINEINTIPG--SLAFY- 342 Query: 330 KLWQASGLGYTDLITRLIELALERHAADNALKTTM 364 LW+ G+ ++ L+ +LI LAL+R N + T+ Sbjct: 343 -LWKEEGVDFSKLMNQLITLALDRERRRNQITTSF 376 >UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma whipplei RepID=DDL_TROWT Length = 347 Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 115/356 (32%), Positives = 189/356 (53%), Gaps = 27/356 (7%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW-HVSDASNY-LLNAD 62 R+ ++FGG+S EH VS SA+ +++ I + V+ +GI K G + + S S Sbjct: 3 RLLLLFGGRSQEHSVSYASARALLEHI-CDEWTVIPVGITKHGDFVYCSTVSEQDYGEVI 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + + PS ++ +++ A+ D++FP++HG GEDG++QGML + Sbjct: 62 DNGNRVVWPSRAGCKKI------EVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDL 115 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT----RANRHNISFAEVESKL 178 ++P+VGS V ASAA MDK TK L AG+ + P+ + NR + ++ + Sbjct: 116 LDIPYVGSGVFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDSF-LKQISDRF 174 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 PLFVKP + GSS G + V EQ +A++ A + IVE + E+ C+++ N+ Sbjct: 175 TFPLFVKPVDAGSSFGCTFVDFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSLIENNG 234 Query: 239 PQASTCGEIVLT----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 C E+V S FY Y KY++ + V+PA + D IA + + LG Sbjct: 235 --VLQCSELVFVKHSGSKFYDYSAKYLNP--VEFVIPAQF--DNTDGYAEIASKVFFELG 288 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 C AR+D F+T E+ +V+NEINT PG T S++P +++ + Y+ +I ++ A Sbjct: 289 CRHYARIDFFVT-ESGLVLNEINTSPGLTQKSIFPSSFKS--MQYSQVIETILASA 341 >UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacterales RepID=DDL_DESPS Length = 322 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 48/355 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 E+LR+ ++ GG S E EVSL A + +DK + YL++ Sbjct: 7 ERLRIALIAGGTSGEREVSLTGADGVERILDKEK---------------------YLVSR 45 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D SAT L ++ DA ++D F ++HG GEDG++QG L Sbjct: 46 YD--------SATDLPRLAA-------DA------ASIDFAFILLHGLHGEDGTIQGFLD 84 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P+ GS VL SA MDKD+ K +A L +A + T+ + E+ LGLP Sbjct: 85 LLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAAGD--FFYSEELIEDLGLP 142 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH-KVIVEQGIKGREIECAVLGNDNPQ 240 L VKPA GSS+G+S +EE+ ++ A + ++VEQ IKGRE+ CAVLGND+ Q Sbjct: 143 LVVKPACAGSSIGISLAHTEEELLAGINHARDCSAGAIMVEQFIKGRELTCAVLGNDDLQ 202 Query: 241 ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A EIV F+ Y+ KY ++ + PA IA + ++++ A++A+Q L G Sbjct: 203 ALPVLEIVPGDKYAFFDYEAKY-QPGASEEICPALIADALREQVQDHAIRAHQALRLRGY 261 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +R D + ++ + E NT+PG T S+ P+ A+G+ + L+ LIEL LE+ Sbjct: 262 SRTDFIYGEDGKLYLLETNTIPGMTETSILPQEAAATGMDFPSLLDTLIELGLEK 316 >UniRef50_B0MM64 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM64_9FIRM Length = 354 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 102/358 (28%), Positives = 184/358 (51%), Gaps = 22/358 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW--------HVS 52 M K R+ ++FGG SA+H SL +A +++ ++ K + + +GI + G+W ++ Sbjct: 1 MAKKRIAVLFGGASADHAASLHTAYSVLSSLPK-EIEPLAIGITRAGRWLFYPGSYENIK 59 Query: 53 DASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGE 112 D S D + P T+ + I + + +D +FP++HG GE Sbjct: 60 DGS--WEQDSDCCSCVISPDMTNKGVIK-------IISDGESTIHRIDAVFPVLHGKYGE 110 Query: 113 DGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA 172 DG +QG+ ++A LP +G+D A+A C D+ + +L D+ + + +TL R+ ++++ A Sbjct: 111 DGRVQGLCKLAGLPVIGNDFAAAALCNDRRIMDLVLSDSNIKVIENVTLHRSEMNDMTAA 170 Query: 173 --EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 ++ KL P++ P + +SVG + +E++ A+ +F +I E +KGRE+ Sbjct: 171 IKKITGKLSFPIYTAPTSCSTSVGACRAENEKELEEAIKASFSHHPYIIAESAVKGRELT 230 Query: 231 CAVLG-NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 CAVLG + + GE+V T D ++YI +++ VPA + +KI+ A A Sbjct: 231 CAVLGAKHHDERVAIGELVRTDDSIDKLSEYI-ASTSELKVPAKLDGLTQNKIKQTARAA 289 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 Y L C ARVD+ L + EV + + +PG S++ +L S Y +++ LI Sbjct: 290 YDALSCKCFARVDMVLDNDGEVYVRRVRGIPGLDRQSIFTRLVTESTYSYEEMLRMLI 347 >UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJ24_FIBSS Length = 344 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 117/357 (32%), Positives = 189/357 (52%), Gaps = 21/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS--DASNYL 58 M +LRV ++ GG S EH+VS+ S +V A+D ++++ + IDK G WH S + S Y Sbjct: 1 MSRLRVLVLMGGPSTEHDVSVVSGTGVVRAMDPEKYNIHPVLIDKDGTWHWSSRELSPYQ 60 Query: 59 -LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 N + +L +A + + P E LP+ D+ F +HG GEDG +Q Sbjct: 61 KANFSENYFHSLEGTAANKKKSPALSE-----------LPSADIAFLALHGKWGEDGHIQ 109 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 ML N+P+ G +LASA MDK +K + R G+ P+ + + + + V + Sbjct: 110 AMLENWNIPYTGCGLLASALAMDKIKSKEIYRANGIPTPPYRVIWKHDFTGDTLVSVADE 169 Query: 178 LGLPLFVKPANQGSSVGVSKVTS-EEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 LG PL +K GSS+G+ + +E IA DL F+ ++++ E+ I G E C + Sbjct: 170 LGYPLVIKDPLGGSSIGIGIAKNLDEAGKIAQDL-FKDSNRLLCEKFIAGGEASCGYIEG 228 Query: 237 DNPQASTCGEIVLTS-DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + P T E+ +T+ +++ ++ KY E + V PA APE+ +I+ + A+ LG Sbjct: 229 EKPLPPT--EMRMTTREYFDFEAKYNGE--CQEVTPAEFAPELTARIQELVKNAHYALGG 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 AG +R DV +T + E+ E NTLPG T S+ P+ G+ Y+ LI +I+ +LE Sbjct: 285 AGYSRTDVRITKDGELFAIETNTLPGMTPTSLLPQQAACVGITYSQLIDLIIDKSLE 341 >UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS02_SYNAS Length = 352 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 116/371 (31%), Positives = 185/371 (49%), Gaps = 34/371 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQG-----QWHVSDAS 55 M +L+VGI+ GG S+E EVSL S +N+ D +D ++ V + +D QG WH+ Sbjct: 2 MGRLKVGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQ- 60 Query: 56 NYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGS 115 N L+ A +A K E +D F +HG G+DG Sbjct: 61 ----NTTRDITERLKGEARRIAYEDLKKE--------------IDFAFISLHGKYGDDGC 102 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 +QG+L + +P+ G V+ASA MDK + +++LR AG+ + P L R V+ Sbjct: 103 IQGLLELLRIPYTGPGVMASALGMDKHLQQKILRAAGVAV-PESLLVREEEWRQDSQIVK 161 Query: 176 SKL----GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 ++ G P F KP +GSSVGV+ V E ++ A ++D V+VE+ ++GRE C Sbjct: 162 DRVKEFPGYPCFTKPIREGSSVGVTVVRDEADLERGMEDALKWDRAVLVEEYLEGREFSC 221 Query: 232 AVL---GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQ 288 VL G +P T EI S+F+ YD KY+ K P I P++ ++I+A ++ Sbjct: 222 IVLEEEGQFHPLELT--EIHPQSEFFTYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIR 279 Query: 289 AYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 A++ LG R+D F+ + ++I + N+ G S + + +G+ + +IT LIE Sbjct: 280 AFKALGFRSYGRIDGFILNDGRILITDPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIE 339 Query: 349 LALERHAADNA 359 A+ H A Sbjct: 340 NAIRIHEAKQG 350 >UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2RKQ9_ACIFE Length = 310 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 111/351 (31%), Positives = 172/351 (49%), Gaps = 46/351 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K RV +V GG S E EVSL + I++A+ + +D V + +D Sbjct: 3 KKDRVAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLD----------------- 45 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 P HI + A+ V+F VHG GEDG LQG+L Sbjct: 46 --PEHIVDQLKASG-----------------------ARVVFNAVHGLYGEDGRLQGILE 80 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P+ GS VLASA MDK TK L ++ + A I L + R A + ++G+P Sbjct: 81 MLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDK-KRDQDPKARILEEIGIP 139 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 VKPA QGSS+GV V E+Q A+ AF++ V+ E G+E+ V+ ++ +A Sbjct: 140 CVVKPATQGSSIGVVIVKDEKQLDDALQEAFQYGDHVLCEAFFTGKEVAAGVMMGEDGRA 199 Query: 242 STCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +++ +FY + KY + PA E +++ IAV AY+ LGC+G+A Sbjct: 200 VPMPLVLIEPHVNFYDFHNKYT-KGATTYTCPAPFDAETTRRLQKIAVAAYEALGCSGVA 258 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 R D+ L + + E+NT+PG T S+ PK A G+ + DL ++++ A Sbjct: 259 RTDLMLADNGDCIALEVNTIPGMTATSLIPKAAAAMGISFPDLCEKILKTA 309 >UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteria RepID=DDL_SYNJB Length = 325 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 159/279 (56%), Gaps = 14/279 (5%) Query: 83 HEHQLIDAQNGQPL-------PTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLAS 135 H ++ID PL D ++ +HG GEDG +QGML LP+ GS LAS Sbjct: 33 HRVKVIDPDEDLPLRLWQERQAGCDFVWIALHGPGGEDGVVQGMLDWLGLPYQGSGPLAS 92 Query: 136 AACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGV 195 A MDK V+K++ R AG+ + +++ +++A+ ++LG PL +KP+N GS+VG+ Sbjct: 93 ALAMDKLVSKQIFRAAGIPTPDWQVWD--DQNPLTWADCAAELGSPLVIKPSNNGSTVGI 150 Query: 196 SKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIV-LTSDFY 254 S V E +A ++LA ++ +E+ + G+EI ++L Q EI+ DFY Sbjct: 151 SIVRDERSFAQGLELARSVSSRIFLERYVPGKEITLSILSG---QVLPAIEIIPAQGDFY 207 Query: 255 AYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVIN 314 Y+ KY G++ ++P +++P + A ++AYQ LGC G+ARVD+ + PE + Sbjct: 208 DYEAKYA-PGGSRHLIPCSLSPAGLARCEAAGLKAYQALGCEGLARVDLRVDPEENPWVL 266 Query: 315 EINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 E+NTLPG T S+ P A G +T+L+ R+++ AL++ Sbjct: 267 EVNTLPGMTPTSLCPDAAAALGWTFTELVERMLQDALQK 305 >UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium RepID=DDL_CLOK1 Length = 297 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 103/348 (29%), Positives = 173/348 (49%), Gaps = 51/348 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++VGI+ GG S+E EVSL S K+I++ +DK+++++V + IDK+ Sbjct: 1 MKVGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVF------------- 47 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + +D F +HG GEDG +Q + + Sbjct: 48 ------------------------------EKVKDIDFAFIALHGKFGEDGIIQSVFQTM 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+ G L S CMDKD++K+LL A +N A +I + NI + +E K+G P+ Sbjct: 78 DIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICIKSI--ENIDYDYLE-KMGYPVV 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP + GSSV + + E A LAF +D +V++E+ I+G EI C +L D Sbjct: 135 VKPNSGGSSVATTIIEKSEDIEEAARLAFNYDEEVMIEKYIEGDEITCCIL--DGTALPI 192 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 F+ Y +KY D ++VV + KI I+++ ++ C G RVD+ Sbjct: 193 LAIKPNKGSFFDYTSKYADGGSEEIVV--EFEKPLQSKIEEISLKCWELFKCKGYVRVDM 250 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L + V+ E+NTLPG T S++PK + +T+L+ ++I+ ++ Sbjct: 251 ILKDKVPYVL-ELNTLPGLTKNSLFPKSANGVNISFTELLDKIIQCSM 297 >UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales RepID=DDL_ANASK Length = 308 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 121/349 (34%), Positives = 174/349 (49%), Gaps = 55/349 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV +++GG+S+E EVSL++ DA+ + DVVLL +D + Sbjct: 8 RVAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLE------------------ 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +A R A V+V F +HG GEDGS+QG+L Sbjct: 50 --VAARLRAER-----------------------VEVAFVALHGRFGEDGSIQGLLESMA 84 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK V+K + R GL +A + RA+ +I ++ GLP V Sbjct: 85 IPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGSIGVGDL--PFGLPCVV 142 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSSVGV V + A A VIVE+ +KG E++ AVL + +A Sbjct: 143 KPAGEGSSVGVHLVNEAAELGPACRDAASHAGDVIVERYVKGTEVDVAVL---DGKALGA 199 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI---AVQAYQTLGCAGMARV 301 EIV + FY Y KY K PA + PE + +RA+ A A++ +GC+G+ RV Sbjct: 200 IEIVPANAFYDYAAKYT-AGTTKYFYPARL-PEAH--VRAVMEAAEAAHRGIGCSGVTRV 255 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 D + + I E+NTLPG T S+ PK+ GL + DL R+++ A Sbjct: 256 DFIVAGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304 >UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular organisms RepID=DDL_BACAA Length = 304 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 187/349 (53%), Gaps = 54/349 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+G++ GG S+E +VS+ + ++ +DK+++++V + ++++ + + A D Sbjct: 1 MRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEK--------MDLIEKAKD 52 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 +D +HG GEDG++QG L Sbjct: 53 -----------------------------------IDFALLALHGKYGEDGTVQGTLESL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS++L+S CMDK+++K++LR G+ +I LT+ +++F E++ KLG PL Sbjct: 78 GIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKM--EDLNFDELD-KLGFPLV 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDNPQAS 242 VKP + GSSVGV V +++ ++ FE+D +V++E+ IKG EI C++ G P S Sbjct: 135 VKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIKGEEITCSIFDGKQLPIIS 194 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 I ++F+ Y+ KY D + V+ + E+ +++ ++ Y+ L C+ ARVD Sbjct: 195 ----IRHAAEFFDYNAKYDDASTIEEVI--ELPAELKERVNKASLACYKALKCSVYARVD 248 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + + V+ E+NTLPG T S+ PK A+G+ Y+ L+ +IE +L Sbjct: 249 MMVKDGIPYVM-EVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 >UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXB8_DESAC Length = 305 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 114/345 (33%), Positives = 177/345 (51%), Gaps = 53/345 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R+G++ GG SAE EVSL++ IV A+++ + VV + DK Sbjct: 7 RIGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADKT------------------ 48 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +P QLI+ Q +DV+F VHG GEDG++QGML + Sbjct: 49 --------------LPA----QLIEKQ-------IDVVFLAVHGRFGEDGTIQGMLELMQ 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG-LPLF 183 +P+ GS VLASA +DK VTKR++ G+ P TL N ++ ++ G P Sbjct: 84 IPYTGSGVLASALAIDKAVTKRMVAQDGVT-TPAATLVDVNS---DVDDIVAQCGHFPQV 139 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP +GS++G++ + ++ A+ A ++D +V+VE I GRE+ +V+ N +A + Sbjct: 140 VKPVREGSTLGIAIANNADELKQAIAQARDYDRRVLVEDYIDGREVTVSVM---NGRALS 196 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 EIV S FY Y KY + +VPA + I+ AV +Y +LGC G ARVD Sbjct: 197 IIEIVPESGFYDYTAKYT-VGKTRYLVPAPLPESQYKAIQQAAVASYASLGCRGAARVDF 255 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 +T +N + E+NT+PG T S+ PK G+ + L+ +++ Sbjct: 256 MVTDDNFYFL-EVNTIPGMTETSLLPKAAADCGMDFAKLVEGILD 299 >UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9PTP4_9BACT Length = 392 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 180/355 (50%), Gaps = 38/355 (10%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHV--SDASNYLLN 60 K + IV GG S+EHEVSL+SA+ + DK +++V ++ I++ W V + +++ Sbjct: 64 KRNIAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERM-NWKVDLGNGERAIID 122 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D + + HE + + D + +HGT GE+G +QG Sbjct: 123 KNDFSFV---------------HEGEQV---------FFDYAYITIHGTPGENGIMQGYF 158 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + ++P+ S VL A DK V LR G+N+A I + R I VE++LG+ Sbjct: 159 ELIDMPYSTSGVLVEALTFDKYVLNNYLRGFGVNVANSILVRRGEEFGIDERAVEAQLGM 218 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA---VLGND 237 P FVKPA GSS GVSKV + +Q A A+ A D ++E + G EI V G Sbjct: 219 PCFVKPAADGSSFGVSKVKNIDQLAPALRKALMEDDSAVIESFLDGTEISVGCYRVKGET 278 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +T E+V ++F+ YD KY + + + PA IA E ++ + Y+ L C G Sbjct: 279 KVLPAT--EVVSHNEFFDYDAKYNGQ--VEEITPARIADETARRVAEETARIYEILNCNG 334 Query: 298 MARVDVFLTPE----NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + R+D LT E +++ + E+NT PG T S P+ +A+G+ D+++ ++E Sbjct: 335 IIRIDYILTKEPDGTDKINLIEVNTTPGMTPTSFIPQQVRAAGMEMKDVLSEIVE 389 >UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteriaceae RepID=C7N496_SLAHD Length = 317 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 109/353 (30%), Positives = 176/353 (49%), Gaps = 47/353 (13%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + V ++ GGKS E EVSL S K +A++ S F+V LL ++ Sbjct: 9 EYNVAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLDTAEKADLK------------ 56 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 +LID +P DV F +HG GEDG++QG L Sbjct: 57 -----------------------RLID----EPF---DVAFLALHGRGGEDGTIQGFLET 86 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFAEVESKLGL 180 +P+ GS + AS+ ++K K AGL +A +T++ + N+ +++ G+ Sbjct: 87 VGIPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTISEDDILDENL-ISDIVETCGI 145 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P VKP +GSS+G++ V A A+ A D + +VEQ I G E+ V+GND+ + Sbjct: 146 PCVVKPTTEGSSLGMTIVRDAADIAEAIKTALAVDVEAMVEQFISGTELTVGVIGNDDAE 205 Query: 241 ASTCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A +IV T D FY Y KY G++ + PA ++ ++ + + +AV A+ LGC G++ Sbjct: 206 ALPVIQIVPTEDEFYNYHAKYA-AGGSRHLCPAPVSRDVTENAQEMAVAAHMVLGCRGVS 264 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R D+ + ++ + E NT+PG T S+ P + +G+ + L +LI LALE Sbjct: 265 RTDIIVDADDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQLCEKLIALALE 317 >UniRef50_Q821S4 D-alanine--D-alanine ligase n=15 Tax=Chlamydiaceae RepID=MUDD_CHLCV Length = 811 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 114/377 (30%), Positives = 186/377 (49%), Gaps = 39/377 (10%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL VG+V GG+S EH+VSL SA+N+V + +DV I++QG W S +N + Sbjct: 450 KKLSVGVVCGGQSCEHDVSLLSARNVVQYLSPQHYDVQYFVINRQGLW--SQVANLDAGS 507 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D + + ++ ++ + L +D + PI+HG GEDG+LQG L Sbjct: 508 DYNSK-----------------NYHVLSSKIAEALANLDFVLPILHGPFGEDGTLQGFLE 550 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF--ITLTRANRH-NISFAEVESKL 178 +AN P+ G +L SA MDK +TKRL G+ + P+ +TL R + + Sbjct: 551 IANKPYGGPSLLFSAISMDKIMTKRLAASVGVPVVPYQPLTLPTWKRTPELCMRRILETF 610 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK A+ GSS+GV +V +E + + AF +D V +E+ G REIE + LG+ Sbjct: 611 TFPMFVKTAHLGSSIGVFEVHNETELKAKISEAFLYDTDVFIEESRLGSREIEVSCLGD- 669 Query: 238 NPQASTCGEIVL------TSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 A +C I + F Y+ KY + A + ++ E +++ + + Sbjct: 670 ---ACSCYYISEPHERRGSKGFIGYEEKYGFNGKSSATIQYDLNLSEESKTRVKELTERV 726 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYT--DLITRLI 347 Y+ + G R+D FL E ++E+N +PG T S P L + LG+T ++ +LI Sbjct: 727 YRVIQGKGSCRIDFFLDREGNFWLSEMNPIPGMTKSS--PFLHDFARLGWTFEQIVHQLI 784 Query: 348 ELALERHAADNALKTTM 364 L + + +T Sbjct: 785 IAGLHKFDQKKKVSSTF 801 >UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FB14_9ACTN Length = 325 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 120/356 (33%), Positives = 185/356 (51%), Gaps = 48/356 (13%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 +++V ++ GG S E E+SL S KN A+ ++ + V + +D Sbjct: 14 EMKVAVLAGGISDEREISLASGKNAAAALTEAGYGTVEM-VD------------------ 54 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 PG+ L +NG DV F +HG GEDG Q +L Sbjct: 55 -----------------PGERGF-LSRLENGN----YDVAFIALHGFGGEDGMTQHILEF 92 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ GS+ LAS MDKD++K L R AGL +AP +T TRA+ +I E+ +G Sbjct: 93 LGIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRADMPSID--EIVEIVGPQS 150 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQA 241 FVKP GSS G+S V + A++LAFE KV+VE + G E A LG+ + +A Sbjct: 151 FVKPVVNGSSYGISLVKDPSELTAAIELAFEHGDKVMVEHRVFGVECSVAALGDGETLRA 210 Query: 242 STCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EI++ S+FY + KY D + +PA + ++ +++ IA +A++ LG G++ Sbjct: 211 LPVVEIMMPQQSEFYDLEVKYADPNDIH-RIPAQLPEDVYAQVQDIACRAHEALGLFGIS 269 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 R DV +T E+ +I E N +PG T+ S+ P + +G+ ++DL L+ELALER A Sbjct: 270 RTDVIVT-EDGPIILETNNIPGMTSESLVPDEARHAGIAFSDLCAELVELALERAA 324 >UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEL0_GEMAT Length = 344 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 116/355 (32%), Positives = 181/355 (50%), Gaps = 15/355 (4%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 + LR+ ++ GG SAE +VSL S I A+ + +V+ L D + LL + Sbjct: 3 KSLRITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICL--DPAEGVLTRETERSLLAS 60 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP-LPTVDVIFPIVHGTLGEDGSLQGML 120 + + SL + G L P L D +F +HG GEDG++Q +L Sbjct: 61 ------GVGSAPPSLEALAGLESRALSPVLGTLPELTEADCLFLALHGGQGEDGTIQALL 114 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR-HNISFAEVESKLG 179 + +P+ GS LASA MDK ++K +LR AG+ A +I + + +V L Sbjct: 115 DMVGVPYTGSGHLASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLDADDVGRHLD 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+ VKP+ QGS+VG+S V + E+ A AV AF +D +V++E+ + GRE+ +LG+ Sbjct: 175 WPVVVKPSKQGSTVGLSIVRAPEELAAAVREAFRYDDEVMIERFVPGRELTVGILGD--- 231 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EI + Y Y+ KY + V A ++PE K+ A +A+Q L G A Sbjct: 232 AVLPTIEIQPVKELYDYECKYTPGMAKEFV--AELSPEEASKLADQAKRAFQALKLRGYA 289 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 R+D L P+ + E NTLPG T S+ P+ A+G+ + DL R+++LAL + Sbjct: 290 RIDFRLDPQGQPWCLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLALAKR 344 >UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira RepID=DDL_LEPBJ Length = 351 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 111/356 (31%), Positives = 179/356 (50%), Gaps = 19/356 (5%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ + FGG S EH +S+++ I + V + + + G W V Y ++ Sbjct: 3 KIAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVV--PLQYRISIPYE 60 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 A + + G + I + D++F +HG GEDGS+QG LRV Sbjct: 61 AVNSSDLFEEEFQKTNGVSKMDFISNLD------ADIVFLGLHGGKGEDGSIQGFLRVLG 114 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 +P+ GS V ASA MDK ++ +G +APF + + N S E K LG P Sbjct: 115 VPYTGSGVAASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTN-SPEETVIKLMSLGFP 173 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-----GN 236 F+KP GSSV K+T++EQ + + L FE D KV+ + + G E+ C VL G Sbjct: 174 QFLKPVEGGSSVSTYKITNQEQLSRQLALIFESDSKVMSQSFLAGTEVSCGVLERYRNGK 233 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A EIV +F+ +++KY + G++ + PA I+ + +++ +A+ A+ +LGC Sbjct: 234 LERIALPATEIVPGGEFFDFESKY-KQGGSREITPARISKQEMTRVQELAIDAHTSLGCR 292 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G +R D F+ E I E NTLPG T S+ P+ +A+G+ ++ LIE+ L+ Sbjct: 293 GYSRSD-FIIVGGEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIEIGLK 347 >UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQQ8_9FIRM Length = 312 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/252 (35%), Positives = 149/252 (59%), Gaps = 4/252 (1%) Query: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT 160 ++F +HG GEDG LQG L + +P+ GS VLA+A MDK +KR+ G++ T Sbjct: 59 IVFNALHGKFGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHT 118 Query: 161 LTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIV 220 R AE++ LP+ VK A+QGSS+GV V +++ A+ AF ++ +V+V Sbjct: 119 YYRYEMKRDLAAEIKQGFSLPVVVKAASQGSSIGVYIVETKDALEDALKEAFSYNDEVLV 178 Query: 221 EQGIKGREIECAVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKV-VVPAAIAPEI 278 E+ I+G+E+ AV GN + +A EI TS Y Y++KY GA ++PA ++ E Sbjct: 179 EEFIRGKELTVAVWGNEEKKEAFPIIEITTTSGRYDYESKYT--KGASTHIIPARVSAEK 236 Query: 279 NDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLG 338 +I+ +A++ + GC G+ARVD+ L+ + + E+N++PG T +S+ P +A G+ Sbjct: 237 TKEIQDLAIKTFTACGCKGVARVDMMLSEDGTPYVIEVNSVPGMTELSLVPDAGRAMGVE 296 Query: 339 YTDLITRLIELA 350 + +L R++E+A Sbjct: 297 FPELCERILEMA 308 >UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteobacteria RepID=DDL_VIBC3 Length = 329 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 113/359 (31%), Positives = 185/359 (51%), Gaps = 45/359 (12%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYL- 58 M K + ++ GG S+EHE+SL SA I ++ + F V+ + + K+G + A YL Sbjct: 1 MTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLD 60 Query: 59 -----LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGED 113 LN+D ++ +D + P +HG GE Sbjct: 61 TNSATLNSDKASY-------------------------------PIDFVVPCIHGFPGET 89 Query: 114 GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNI--APFITLTRANRHNISF 171 G +Q ML +A +P++G ASA +K +T +L DA L+I P++ LT+ +I Sbjct: 90 GDIQSMLELAGIPYLGCGPEASANSFNK-ITSKLWYDA-LDIPNTPYLFLTQNTPSSIDK 147 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 A+ +FVK A QGSSVG KVT+E+Q A A++ AF F +V+VEQ +K RE+E Sbjct: 148 AKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAAFGFSEQVLVEQAVKPRELEV 207 Query: 232 AVLG-NDNPQASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDK-IRAIAVQ 288 + N S GE++ FY+Y+ KY A+ V+ A E + + I+ A + Sbjct: 208 SAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHARTVLEAENLTEKHKELIQTYAER 267 Query: 289 AYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 + + ++R+D FLT E ++ +NE+NT PG T ISM+PK+ + +G +++ + + + Sbjct: 268 VFIHMKLRHLSRIDFFLTQEGQIYLNEVNTFPGMTPISMFPKMLEHNGHRFSEFLAQCV 326 >UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacteria RepID=DDL_MARAV Length = 325 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 118/349 (33%), Positives = 173/349 (49%), Gaps = 61/349 (17%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV + GG SAE EVSL+S K ++ A+ + D V G D QG LL D Sbjct: 24 RVAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAV--GRDIQG---------CLLRTVDE 72 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P D +F +HG GEDG+LQ +L A Sbjct: 73 --------------------------------PDFDRVFIALHGRGGEDGTLQAILGQAG 100 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE---SKLGLP 181 +P+ GS+VLASA MDK TK + GL F +T S E E + LG P Sbjct: 101 IPYTGSEVLASALAMDKLRTKYVFEGCGLPTPAFRAMT-------SVGEAEGIVAALGTP 153 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKPA++GSS+G+ KV S + A A + A D V+VEQ I+G E ++L Q Sbjct: 154 LSVKPAHEGSSIGIRKVNSAAELAEAYEAAARLDDLVLVEQWIEGPEFTVSLL-----QD 208 Query: 242 STCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 I L++D FY YD KY+ +D + +P +AP+ +++ +A+ A++ LGC Sbjct: 209 KALPAIGLSTDHAFYDYDAKYLADD-TRYRIPCGLAPDDELRLQHLALDAFRVLGCRTWG 267 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 RVD+ E + E+NT+PG T+ S+ P +A+G+ + +L+ R++ Sbjct: 268 RVDIMQDRAGEFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILR 316 >UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C25 Length = 302 Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 106/346 (30%), Positives = 171/346 (49%), Gaps = 53/346 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG+S E E+SLQS + ++ ++ +S+ +NA Sbjct: 8 KVAVLLGGESNEREISLQSGQAVLTSLLQSK-----------------------VNA--- 41 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 L P L++ L +F +HG GEDG +Q L Sbjct: 42 --FGLDPKFEPLSK-----------------LAECSRVFICLHGKDGEDGKIQSYLDDIK 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS AS MDK ++K + + +N F+ L +++ EV LG F+ Sbjct: 83 IPYTGSGFHASKLGMDKLLSKNIWKKLKINTPNFVRL----EEGMTYDEVCKNLGSSFFI 138 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 K AN GSS+G+SKVT +QY A + A++ D+ VI E I G E +L + +P + Sbjct: 139 KAANSGSSIGISKVTKPQQYQAAFESAYKVDNTVIAEMMIFGEEFTLPIL-DSSPLSIV- 196 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EI +DFY Y+ KY D + + PA + + DKI + ++A+ LGC+G RVD Sbjct: 197 -EIRPKTDFYDYEAKY-HRDDTEFICPAKLDKVLVDKINQLGMKAFNALGCSGWGRVDFM 254 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + +NEV I E+NT+PG T+ S+ P + SGL + L+ ++++ A Sbjct: 255 INNQNEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLDTA 300 >UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria RepID=DDL_HAMD5 Length = 320 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 108/363 (29%), Positives = 178/363 (49%), Gaps = 64/363 (17%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S+E ++SLQS +V + ++ GID + D N+L+ Sbjct: 4 KVAVLLGGTSSERQISLQSGHAVVAGLREA-------GIDAR----PIDTKNFLVTE--- 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 L+ + A F +HG GEDG LQ +L Sbjct: 50 ----LKEKGFTKA-------------------------FIALHGRDGEDGHLQAVLEFLK 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA-----------------NRH 167 +P+ GS V+ASA MDK +K + + AGL ++P++ L R NR Sbjct: 81 IPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNREQIWPNVTQNTSNDLLLNNRI 140 Query: 168 NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGR 227 + + ++LGLPL VKP+ +GSS G++KV +Q A+ A+ +D +++VE+ G Sbjct: 141 SNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQLDDALKKAWHYDEEILVEKWHFGT 200 Query: 228 EIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAV 287 E+ A+LG D S I ++ FY Y KY+ D + P+ + E ++ +++ Sbjct: 201 ELTVAILG-DTVLPSI--RIQVSDIFYDYQAKYVS-DKTQYFCPSGLKQEQEKQLATLSM 256 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 AY+ LGC G RVDV L E + EINT PG T+ S++P + +G +++L+ +++ Sbjct: 257 NAYRALGCDGWGRVDVMLDDEGHFYLMEINTAPGMTDHSLFPMAARQAGFSFSELVCKIL 316 Query: 348 ELA 350 LA Sbjct: 317 SLA 319 >UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HX62_9BACT Length = 323 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 117/350 (33%), Positives = 162/350 (46%), Gaps = 57/350 (16%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG S E E+S S K + +A+ K+ F+V D+ ++D S Sbjct: 13 RVAVLAGGDSDEAEISRVSGKAVAEALRKAGFEVGEFEADRSLAKTLTDFSP-------- 64 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 DV F HG GE+G+LQG L Sbjct: 65 -----------------------------------DVAFLATHGGGGENGTLQGFLETMK 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA M K ++ L R+ GL + LT A+R SF P V Sbjct: 90 IPYTGSGVLASAIGMSKMRSRALFRERGLAVP----LTYAHRTEESFNPGYISFDPPYMV 145 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP GSS+GV +V E A AV A + H V+VEQ I GREI+ A+L Sbjct: 146 KPEAAGSSIGVKRVLRREDLADAVSEAGRYSHWVLVEQLIPGREIQSAIL-----SGRYL 200 Query: 245 GEIVLTSD----FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 G I + D FY Y +KY+ G++ + PA + P+ + ++ I ++A + L G R Sbjct: 201 GAIEIIPDKAEPFYTYASKYVP-GGSRHISPAPLTPDESSELSRITIEACRVLDVRGACR 259 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +D L E VI EINTLPG T S+ P++ GL +TDLI LI A Sbjct: 260 LDTILNDEGVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLIIELIATA 309 >UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=DDL_BACFN Length = 324 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/352 (30%), Positives = 178/352 (50%), Gaps = 38/352 (10%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS--DASNYLLN 60 K + IV GG ++E VSL+SA+ I IDK ++++ ++ ++ + +W V D S ++ Sbjct: 2 KRNIAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGR-RWEVQLQDGSKTPVD 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D + + NG D + +HGT GEDG LQG Sbjct: 61 RNDFSFM------------------------NGAEKVVFDFAYITIHGTPGEDGRLQGYF 96 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ VLA+A DK V + L+ G+ I+ + L + +S +V K+GL Sbjct: 97 DMIRIPYSCCGVLAAAITYDKFVCNQYLKAFGVRISESLLLRQG--QAVSDEDVVEKIGL 154 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNP 239 P F+KP GSS GV+KV + EQ A+ AF +V++E + G E+ C + Sbjct: 155 PCFIKPNLGGSSFGVTKVKTREQIQPAIAKAFSEAEEVMIEAFMGGTELTCGCYKTKEKS 214 Query: 240 QASTCGEIVLTSDFYAYDTKY---IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 E+V ++F+ YD KY +DE + PA I+ E+ +++ + Y LGC+ Sbjct: 215 VVFPLTEVVTHNEFFDYDAKYNGQVDE-----ITPARISEELTRRVQTLTSAIYDILGCS 269 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 G+ RVD +T ++ + E+NT PG T S P+ +A+GL D++T +IE Sbjct: 270 GIIRVDYIITEGEKINLLEVNTTPGMTATSFIPQQVRAAGLDIKDVMTDIIE 321 >UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYM6_UNCTG Length = 306 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/347 (28%), Positives = 178/347 (51%), Gaps = 54/347 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++G+++GG S+E E+S++S K +++ K + +V + +++ Sbjct: 14 KIGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNR------------------- 54 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 S+A+ K + +DV + +HG +GEDG++QGML + Sbjct: 55 ----------SIAEEIKKEK--------------IDVAYIALHGPMGEDGTIQGMLEILG 90 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS + ASAA +DKDV+K++ + A + LT + F V P+ V Sbjct: 91 IPYTGSGIFASAASIDKDVSKKIFKYADI-------LTPEWKMLKKFGTVPEIKKYPVVV 143 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP +QGS++GV+ V ++A AV F++ + ++EQ I+G+E+ VL N +A Sbjct: 144 KPVSQGSTIGVAIVKRPSEFAAAVKEVFKYGDEALIEQFIEGKEVTVGVL---NGKALPV 200 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EIV FY + KY + G++ ++PA I+ E + ++ A + Y+ C + RVD+ Sbjct: 201 VEIVPKGKFYDFKAKY-QKGGSQHIIPAGISEEAYETVQNYAEKVYEIFKCRAICRVDMI 259 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + ++ V + E NT+PG T S+ P +A G + L+ ++ E AL Sbjct: 260 VDRKDRVWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKITESAL 306 >UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4ECT1_9ACTN Length = 321 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 118/356 (33%), Positives = 176/356 (49%), Gaps = 48/356 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +E + V ++ GG SAE E+SL S KN+V A+ ++ + V L ID + A ++++ Sbjct: 6 LENMHVAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVEL-ID-------TAADDFMVT 57 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 A G DV F +HG GEDG++QG + Sbjct: 58 M----------------------------ATGG-----FDVAFIAMHGAGGEDGAMQGAM 84 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA DK+V+K L AG+ IAP + L + +I + G Sbjct: 85 ETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLALEVGDEVDID--HIVEVCGE 142 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 FVKPA GSS G+S V + A+ AF + KV+VE+ I+G EI V G D+ + Sbjct: 143 RCFVKPAVNGSSYGISLVHEPSELPAAIAKAFAYGDKVLVEKCIEGTEITVGVYGEDDVR 202 Query: 241 ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A EI D FY D KY+D +PA I+PE + + +A A++ LGC G+ Sbjct: 203 ALPIVEIRKPEDCEFYDLDVKYVDPTDIH-RIPAQISPENYARAQELACAAHKALGCLGI 261 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYP-KLWQASGLGYTDLITRLIELALER 353 +R D F+ E+ VI E NT+PG T+ S+YP ++ + + + LI + L R Sbjct: 262 SRSD-FIVSEDGPVILETNTIPGMTDTSLYPDEIRHTDDMTFPQVCDSLIRMGLRR 316 >UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIX2_HALO1 Length = 330 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 112/344 (32%), Positives = 173/344 (50%), Gaps = 48/344 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RVG+++GG S+E EVSL+S ++ A+ + ++ V G+D W + LL Sbjct: 25 RVGVLYGGPSSEREVSLESGAGVLAALQERGYECV--GVD----WTPGSSLPALLV---- 74 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 EH+ V+V++ +HGT GEDG++QG+ Sbjct: 75 -------------------EHR------------VEVVWNALHGTYGEDGAVQGLCACMG 103 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP G+ + ASA MDK ++KRL G+ P + R + + A V ++ LPL + Sbjct: 104 LPCTGASIAASAVAMDKILSKRLFESVGVPT-PQWRVLRPDEGDT--AAVFAEWALPLVI 160 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSSVG+S V ++ A+ A V+VE+ I+G E+ +L + A Sbjct: 161 KPAYEGSSVGLSLVRERDEIGPALKRARAGQGPVLVERYIEGVELSVGILADRVLGAV-- 218 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EI TS Y Y+ KY+ +D A +V P I D A+ ++AY LGC G AR D+ Sbjct: 219 -EIRPTSGLYDYEAKYVRDDTAFLVPPELERGHI-DTCEALGLRAYHALGCTGYARADLR 276 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + + I E+NTLPG T+ S+ PK+ +G+ Y L R++E Sbjct: 277 VQADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCERILE 320 >UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacteria RepID=DDL_YERP3 Length = 306 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 115/349 (32%), Positives = 176/349 (50%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ + ++ D G+D + D P Sbjct: 4 KVAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAY--GVDTK---------------DFP 46 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 T L + D +F +HG GEDG+LQG+L Sbjct: 47 V--------TQLKE------------------QGFDKVFIALHGRGGEDGTLQGVLEFLQ 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV---ESKLGLP 181 LP+ GS V+ASA MDK TK + + GL I+P++ L R +S E+ +KLGLP Sbjct: 81 LPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFETLSPEELVACVAKLGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+++GSSVG+SKV + A+ AF+ D V++E+ + G E A+LG+ + Sbjct: 141 LIVKPSHEGSSVGMSKVDHASELQKALVEAFQHDSDVLIEKWLSGPEFTVAILGD---EV 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY YD KY+ D + P+ ++ E ++ A+A+QAY L C+G RV Sbjct: 198 LPSIRIQPPGVFYDYDAKYL-SDKTQYFCPSGLSDESEQQLAALALQAYHALDCSGWGRV 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV + + E+NT PG T+ S+ P + GL ++ L+ R++ LA Sbjct: 257 DVMQDRDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILMLA 305 >UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATM1_RUBXD Length = 318 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 107/359 (29%), Positives = 172/359 (47%), Gaps = 51/359 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+ ++ GG S E +VSL + + + A+++ +V + +++ + Sbjct: 2 VRLAVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVEETTTERL------------ 49 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 I L P+A +F +HG GEDG++Q +L Sbjct: 50 ---IELEPAA----------------------------VFVCLHGPGGEDGTVQALLETL 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES----KLG 179 +P+ GS L+S CMDKD KR L AGL F T R + + A + LG Sbjct: 79 GIPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMNEMGAAAALNVAADSLG 138 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GND 237 PL VKPA +GSS G+S+V E+ AV AF +D K+++E+ ++GRE+ +L + Sbjct: 139 YPLVVKPAREGSSFGLSRVERPEELLDAVYEAFGYDAKILLERWVEGREVSVPILEPAGE 198 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+A EI Y + KY +PA + P ++ A+ Y+TLGC+G Sbjct: 199 APRALGLVEIRPREGAYNFQAKYTP-GMTDFAIPAELPPGTASRLEETALAVYRTLGCSG 257 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 ARVD + E V++ + T+PGFT S +P +A+GL + L+ +++ AL AA Sbjct: 258 FARVDTIVEGETPQVLD-VKTIPGFTETSTFPLAAEAAGLSFERLVEIILDSALRTEAA 315 >UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9D0_9PORP Length = 329 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 116/360 (32%), Positives = 174/360 (48%), Gaps = 41/360 (11%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + I+ GG S E EVS +SA+ I+ ID+S F L+ I W V+DA+ Sbjct: 1 MDKPNIAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITADA-WSVTDATGR--- 56 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 G + L+ A+ G T V + +HGT GE+G LQG L Sbjct: 57 -------------------EGTIDRALV-ARFGAEEVTFAVAYITIHGTPGENGLLQGYL 96 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR-HNISF-------A 172 + +P+ VL A +K+ L GL IA R+ R HN + Sbjct: 97 DMLGIPYTTGGVLCEALTFNKEACNAYLAHHGLRIA------RSQRLHNQTKELSPEEQQ 150 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC- 231 ++ES L LPLFVKP GSS+ +++ +Q A AV A+ V+VE+ I G E+ C Sbjct: 151 QIESTLRLPLFVKPNTGGSSIATTRIEQWDQLATAVVDAYTAAPDVLVEECIVGTEVTCG 210 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ D A E+V F+ YD KY + + + PA I+PE+ +++ ++ Sbjct: 211 CVILPDEAFALPVTEVVAHDTFFDYDAKYYGK--SDEITPARISPELTQRVQETSLTIAH 268 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L C G R+D + + + E+NT PG T S P+ +A+GL +DLITR+I+ L Sbjct: 269 LLDCYGFVRIDFIIEADGIPTLLEVNTTPGMTEASFIPQQVRAAGLQLSDLITRIIKSKL 328 >UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9U3_BLASP Length = 331 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/360 (28%), Positives = 178/360 (49%), Gaps = 36/360 (10%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDV--VLLGIDKQGQWHVSDASNYLLNAD 62 ++ IV GG + E +SL+S + + + K F+V + L I+K W + D +N Sbjct: 3 KIAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIEK---WILKDKNN------ 53 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + P + + N Q L D +F +HGT GEDG LQ + Sbjct: 54 --------------KEYPVNKQDFTVRITNDQIL-KFDCVFNAIHGTPGEDGVLQAYFHL 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE--VESKLGL 180 +P+ G ++ +K L++ G+ AP L + N SF E + K+GL Sbjct: 99 LKIPYTGCHFHHASVTFNKKYCLTFLKEFGIKTAPSFFLNK----NQSFCEKKILKKVGL 154 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNP 239 P FVKP GSS+G+SKV E + A A++ AF D ++IVE +KG E+ V+ N + Sbjct: 155 PCFVKPNRSGSSLGISKVYQERELAKAIEHAFRKDQEIIVESFLKGTEVSVGVISWNQDI 214 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + EI+ +DF+ +++KY ++ + PA + P + KI+ +A Y+ L +G++ Sbjct: 215 KVLPITEIISRNDFFDFESKY--SGKSQEITPARLLPSLEKKIKKLAKNVYEILNLSGIS 272 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 R + L + + EINT+PG + S+ PK + +G+ ++L + I ++E N+ Sbjct: 273 RSEYILVNGDPFFL-EINTIPGLSEESILPKQLKIAGISLSELFKKNIYDSIEIFKKKNS 331 >UniRef50_A1SMF1 D-alanine--D-alanine ligase n=1 Tax=Nocardioides sp. JS614 RepID=A1SMF1_NOCSJ Length = 311 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 170/346 (49%), Gaps = 42/346 (12%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV +V GG+S EH+VSL SA + +D R+DVV L I + G W D Sbjct: 2 RTRVAVVGGGRSCEHDVSLASAAAVAAGLDPHRYDVVRLTIGRDGAWRDGD--------- 52 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 RP + A + L DV+FP+ HG GEDG+L + + Sbjct: 53 -------RPVGLAAAV---------------EVLRRCDVVFPVAHGPHGEDGTLAALCEL 90 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A +P+VGS V A A MDK TK + G+ A +T A A E+ G P+ Sbjct: 91 AGVPYVGSGVRAGALAMDKWATKLVAAALGIATAAGRLVTAAT------ATQETWTG-PV 143 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 VKP GSS+GV+ V+ A+ A D + +VE+ + GREI+ AVL + Sbjct: 144 VVKPVAAGSSIGVAFVSEPASLPPALATALALDDRALVEELVTGREIDVAVLRRADGAVV 203 Query: 243 TCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + + +D + +D KY A VPA + + AV Y LGC+G+ARV Sbjct: 204 ASPPLEIVADGLFDFDAKYGGR--ADFRVPAVLDEVDAKALEGAAVATYDALGCSGVARV 261 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 D FLT + V+NE+NT+PG T S P+++ A+GL Y DL+ L+ Sbjct: 262 DFFLT-DTGPVLNEVNTVPGMTEHSQVPRMFAAAGLPYPDLLDELV 306 >UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira biflexa serovar Patoc RepID=DDL_LEPBA Length = 349 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 109/374 (29%), Positives = 178/374 (47%), Gaps = 49/374 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K+++ ++FGG S EH +S++S+ I ID+ ++DV + I+ G++ + S + Sbjct: 1 MSKIKIALLFGGISGEHIISVRSSAFIFATIDREKYDVCPVYINPNGKFWIPTVSEPIY- 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-----QPLPTVDV-------IFPIVHG 108 DP+ GK E + + N P D+ F +HG Sbjct: 60 -PDPS---------------GKTEIEFLQEFNKANAIVSPSEPADISQMGFLSAFLGLHG 103 Query: 109 TLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL------T 162 GEDG +QG L +P GS VLAS+ MDK L G+ +APF+ L Sbjct: 104 GAGEDGRIQGFLDTLGIPHTGSGVLASSLAMDKYRANILFEAMGIPVAPFLELEKGKTDP 163 Query: 163 RANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ 222 R N+SF+ P+F+KP GSSV + E+ VD F D +V+V++ Sbjct: 164 RKTLLNLSFS-------YPVFIKPTLGGSSVNTGMAKTAEEAMTLVDKIFVTDDRVLVQK 216 Query: 223 GIKGREIECAVL-----GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 + G E+ VL NP EI S+F+ ++ KY + ++ + PA + E Sbjct: 217 LVSGTEVSIGVLEKPEGKKRNPFPLVPTEIRPKSEFFDFEAKYT-KGASEEITPAPVGDE 275 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 + ++ ++ ++ LGC G +R D F+ + + E NTLPG T S+ P+ +A G+ Sbjct: 276 VTKTLQEYTLRCHEILGCKGYSRTD-FIISDGVPYVLETNTLPGMTGTSLIPQQAKALGI 334 Query: 338 GYTDLITRLIELAL 351 D+ T L+E++L Sbjct: 335 NMKDVFTWLLEISL 348 >UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales RepID=DDL_BACHD Length = 305 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 110/357 (30%), Positives = 177/357 (49%), Gaps = 59/357 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG SAE EVSL S K I++A+ + +V+ GID +H + + D Sbjct: 1 MKIAVLYGGTSAEREVSLSSGKGIMEALKANGHEVI--GID----FHPDQVRDLVDLDVD 54 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 I L HG LGEDG +Q +L + Sbjct: 55 LVFIGL-------------------------------------HGRLGEDGKVQALLDLL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR----ANRHNISFAEVESKLG 179 N+P+VG+ V SA MDK K AG+ +A + L AN N + Sbjct: 78 NIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYDANAFNFTGT------- 130 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+ VKP +GS++G++ +EE+ ++ AF D +++E+ I G E+ AVLGN Sbjct: 131 YPVVVKPNQEGSTIGLTVAETEEELLQGIEEAFRHDDTILIEEFIAGTEVTVAVLGNKGE 190 Query: 240 QAST-CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + S EIV + Y Y++KY ++ +VPA I+ E ++ AV+A+Q LGC Sbjct: 191 ERSLPVVEIVPKNKLYDYESKYAP-GMSEHIVPARISEEHTAYVQQAAVRAHQALGCDVY 249 Query: 299 ARVDVFLTPEN--EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +RVD F+ P + + VI ++NTLPG T S+YP + G+ Y ++I + L+L++ Sbjct: 250 SRVD-FIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQTFVNLSLKK 305 >UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteobacteria RepID=DDL_XANAC Length = 318 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 118/351 (33%), Positives = 177/351 (50%), Gaps = 54/351 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG S+E EVSL S N++DA+ ++R G+D Q Sbjct: 18 RVAVLLGGTSSEREVSLNSGGNVLDAL-RAR------GVDAQ------------------ 52 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHG--TLGEDGSLQGMLRV 122 P L A Q D +F ++HG GEDG +QG++ Sbjct: 53 ---------------PVDGIPALAKALVAQQF---DRVFNVLHGHNGGGEDGIVQGLMEA 94 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR-ANRHNISFAEVESKLGLP 181 +P+ GSDVL SA MDK TK++ GL+ + L A+ +I A ++GLP Sbjct: 95 FGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGASAEDIHAAA--RQIGLP 152 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKPAN+GSSVGVS+V + Q AV LA +D +++EQ I+G E+ AVLG+ A Sbjct: 153 IIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGALLMEQLIEGDELTVAVLGD---TA 209 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 IV +Y Y+ KYI +D + + P + E +IR +A+ A++ GC G RV Sbjct: 210 LPSIRIVPKGQWYDYNAKYIADD-TQYLCP-GLEGEAEAQIRQLALDAFRAAGCRGWGRV 267 Query: 302 DVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 DV ++ + E+NT PG T+ S+ PK + G+ + L+ R++E L Sbjct: 268 DVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWRVLEQTL 318 >UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobacillus RepID=B5ELC0_ACIF5 Length = 308 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/349 (29%), Positives = 170/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R+ +++GG S E EVSL S ++ + D V G+D Q Sbjct: 6 RIAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAV--GVDIQ------------------ 45 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P + Q+ A++G + F + HG +GEDG LQ L + Sbjct: 46 ---------------PAILQQQM--AESG-----AQIAFNVCHGAVGEDGLLQACLETLD 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK K+L R AGL + I L R + ++ ++ G PL++ Sbjct: 84 MPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILLHRGSH----TPDLGARFGWPLYI 139 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP + GSS+GVSKV + A+ AF + +V+ E + G E+ +L + QA Sbjct: 140 KPNHGGSSLGVSKVGGPAELDAALQCAFAIEDEVLCEGAVIGHEVTVGIL---DGQALPP 196 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I FY Y KY+ +D + ++P+ + + +++A+A++A+ LGC RVD Sbjct: 197 IVIETPRAFYDYTAKYLADD-TRYLLPSGLGAPLEQQLQALALRAFAELGCRDWGRVDFM 255 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + E+N++PG T+ S+ P +A+G+G+ +L ++ A R Sbjct: 256 IGGDGRPHLLEVNSVPGMTSHSLIPMAAKATGMGFPELCATILRTAQRR 304 >UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae RepID=DDL_VIBVY Length = 331 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/358 (32%), Positives = 181/358 (50%), Gaps = 43/358 (12%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDK-SRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V ++ GG S+EHE+SL S++ + + +V+ + I +G W D L+ D Sbjct: 5 VLLLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEG-WF--DQKERLVYLD-- 59 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 V ++ ID +D I P +HG GE G +Q + +A Sbjct: 60 ---------IHTKSVKSDEFNESID---------IDFIVPCIHGFPGETGDIQSLFELAG 101 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDA-GLNIAPFITLTRANR--HNISFAEVESKLGLP 181 +P++G AS+ +K +T +L DA G+ P++ LT N H +S E K G Sbjct: 102 IPYLGCGPEASSNSFNK-ITSKLWYDAIGIPNTPYLFLTENNEESHQLS-REAFDKWG-K 158 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQ 240 LFVK A QGSSVG VT+ EQ + A+D AF F H+V+VE+ +K RE+E + N Sbjct: 159 LFVKAARQGSSVGCYSVTNIEQLSDAIDKAFGFSHQVLVEKAVKPRELEVSAYEMNGQLH 218 Query: 241 ASTCGEIVLTSD-FYAYDTKY------IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 S GEI+ FY+YD KY I E AK + +A I+ + + ++ + Sbjct: 219 ISKPGEIIAPDGAFYSYDEKYSAGSHSITEVEAKNLTEQQLAT-----IQLCSEKVFRQM 273 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 ++R+D FLT E E+ +NE+NT PG T ISM+PK+ Q +G + + + IE +L Sbjct: 274 NLRHLSRIDFFLTSEGEIYLNEVNTFPGMTKISMFPKMLQHNGHKFHEFLADCIERSL 331 >UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteobacteria RepID=DDL_BURPP Length = 313 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 114/350 (32%), Positives = 170/350 (48%), Gaps = 50/350 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + +VL G+ G DA + DP Sbjct: 11 KVAVLLGGNSAEREVSLNSGR------------LVLQGLRDAG----VDAHPF-----DP 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 A RP A E + A N +HG GE+G +QG L Sbjct: 50 AE---RPLAAL-------KEEGFVRAFNA------------LHGGYGENGQIQGALDFYG 87 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 + + GS VL SA +DK TK + + G+ PF + R + + E+ +KLGLPLFV Sbjct: 88 IKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYEARSKEIVAKLGLPLFV 147 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGN-DNPQAS 242 KPA++GSSV V KV S + A+ A ++D V+VE+ ++ G E + GN D P Sbjct: 148 KPASEGSSVAVIKVKSADALPAALIEAVKYDKIVVVEKSVEGGGEYTACIAGNLDLPVI- 206 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 IV +FY Y KYI D + ++P +A + +++ +A +A+ LGC R D Sbjct: 207 ---RIVPAGEFYDYHAKYIAND-TQYLIPCGLAADEEARLKVLARRAFDVLGCTDWGRAD 262 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L + E+NT PG T+ S+ PK +A G+ Y +L+ ++ L L+ Sbjct: 263 FMLDADGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVGVLALTLQ 312 >UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH51_9BACT Length = 1029 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 103/355 (29%), Positives = 173/355 (48%), Gaps = 56/355 (15%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 ++ L++ ++ GG S+E +SLQSA+ + A+ +V + I +D S ++ Sbjct: 727 VKALKIAVLKGGPSSERPISLQSAEAVAKALRDGGHEVTEIDI--------TDFSLPAIS 778 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D +D++FP++HG GEDG +Q ++ Sbjct: 779 KD------------------------------------IDLVFPVLHGEFGEDGQVQKLI 802 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 P+VG D+ +S C+DKD LR++GL + + L + E+ + L Sbjct: 803 EGQGFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRSKDE------EISQNITL 856 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P VKP QGSS+ +S V E A+DLAFE D V+VE KG IEC V G + + Sbjct: 857 PCVVKPNRQGSSISLSLVEKEGDLRKAIDLAFENDDTVLVESFFKG--IECTV-GLIDGK 913 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKV--VVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A + EI+ F+ YD KY G P I +++++++ ++++ L + Sbjct: 914 ALSVVEIIPPEGFFDYDAKYTYSKGKTQYNCPPKEIPEDVSERLKKCGEESFKVLKGRHL 973 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVD+ P+ ++ +I E NT+PGFT+ S+ PK + G+ +T+L L + A+E Sbjct: 974 MRVDMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFTELCCGLAKKAIE 1028 >UniRef50_Q5G7J6 Vancomycin resistance protein C1 (Fragment) n=1 Tax=Enterococcus gallinarum RepID=Q5G7J6_ENTGA Length = 235 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 120/216 (55%), Gaps = 1/216 (0%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 DV+FP++HG GEDG +QG+L + NLP+VG V ASA CM+K + +L G+ AP + Sbjct: 21 DVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTL 80 Query: 160 TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVI 219 L+R + G P+F+KP GSS G++KVT + A+ AF + V+ Sbjct: 81 LLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKGITKVTDKTALHSALTTAFAYGSTVL 140 Query: 220 VEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 +++ I G EI C +LGN+ C I L F+ ++ KY A + VPA + + Sbjct: 141 IQKAIAGIEIGCGILGNEQLTIGACDAISLVDGFFDFEEKY-QLISATITVPAPLPLALE 199 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 +I+ A Y+ LG G+AR+D F+T + + +NE Sbjct: 200 SQIKEQAQLLYRNLGLTGLARIDFFVTNQGAIYLNE 235 >UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=DDL_ACIB3 Length = 308 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/351 (29%), Positives = 170/351 (48%), Gaps = 51/351 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GGKSAE VSL S + ++DA+ +S G+ + Sbjct: 9 KVAVLLGGKSAERAVSLDSGQAVLDALLRS-------GVQAE------------------ 43 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 A P S+ + L D F ++HG GEDG +QG+L N Sbjct: 44 ---AFDPQNRSVTE-----------------LVNYDRAFIVLHGRGGEDGQIQGVLEWLN 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G+ V SA MDK TK++ + + L AP+ +T+ + AE LGLP+ + Sbjct: 84 IPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLDSVIAE----LGLPVII 139 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP ++GSSVG+SKV E +A A++ A + D V+ E+ I GRE + L N P Sbjct: 140 KPVHEGSSVGMSKVEKAEDFAAAIEKATQHDAVVMAEKWITGREFTISFL-NGQPLPVIR 198 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + FY Y+ KY D + +P ++ K++A+ ++A+Q +G G R+D Sbjct: 199 LQPPADVAFYDYEAKYQRND-VEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDAM 257 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + + E+NT+PG T+ S+ PK +A G + +L +++ LE A Sbjct: 258 QDEQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILDQTLEGTA 308 >UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteobacteria RepID=DDL_THICR Length = 313 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 104/347 (29%), Positives = 169/347 (48%), Gaps = 51/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG +AE +VSL+S ++ A+ D V G D Sbjct: 17 KVAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAV--GCDVT------------------ 56 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 S L ++ K+ D F +HG GEDG +Q +L Sbjct: 57 -------SVAQLVEIAQKY----------------DRAFIALHGRWGEDGGVQAVLDSLA 93 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP+ GS + ASA MDK TK L + GL FI ++ + ++ + L P+ V Sbjct: 94 LPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSPSRPLDVETFD----LTFPVIV 149 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP+++GSS+G+ KV + + AVD A ++D ++++EQ I GRE CAVL + +A Sbjct: 150 KPSHEGSSIGMRKVDTLDALQEAVDFAQQYDSEILIEQWITGREFTCAVL---DGEALPM 206 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 ++ DFY +D KY + + + P + +I+A+ +QA+ +G RVD+ Sbjct: 207 IQLKTDHDFYDFDAKY-QSNTTEYLCPCGLEIAEEKRIQALVLQAFDAVGARHWGRVDLM 265 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L +N+ + EINT+PG T+ S+ P +A L ++ L+ +LI L L Sbjct: 266 LDDQNQPWLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVLKLISLTL 312 >UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcus sp. MC-1 RepID=DDL_MAGSM Length = 310 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 109/351 (31%), Positives = 169/351 (48%), Gaps = 59/351 (16%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++G+++GG S E EVSL+S + + A+ + VV + +D+ Sbjct: 7 KIGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDR------------------- 47 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 HI T + + G ++V +HG +GEDG++QG+L Sbjct: 48 -HI------TKVLEREG-----------------IEVAVLALHGPMGEDGTIQGLLEFMG 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG---LP 181 +P+ G +V ASA CMDK ++KRL GL +I L A H + V+ LG Sbjct: 84 IPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIEL--AGDHEEADELVDHFLGDFHGA 141 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 FVKP + GSSVG+S+ +++ V A H+ +VE+ I+GRE+ ++L + +A Sbjct: 142 AFVKPLDSGSSVGISRAVGKDELIRGVAKALSVSHRCMVERAIEGRELTLSIL---DGEA 198 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDK----IRAIAVQAYQTLGCAG 297 EIV FY YD KY +VP AP ++DK + I + AY GC G Sbjct: 199 FPLIEIVPIDGFYDYDHKYT-AGRTNYLVP---APNLDDKSLEAVVKIGLAAYHITGCRG 254 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + R D L E + E+NT+PG T +S+ PK A G+ L R+++ Sbjct: 255 LVRADFILDGEGTPWLLELNTIPGMTELSLAPKAAHAVGIEMPQLAERILQ 305 >UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacteriales RepID=C7PEF5_CHIPD Length = 329 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/354 (28%), Positives = 178/354 (50%), Gaps = 29/354 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +V GG S E+ +S+QSA I +D S+++V + + + G W+ + + L+ D Sbjct: 2 KKNIALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDG-WNYTGSDGQLIAVD 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + NG + D +F +HGT GEDG LQG + Sbjct: 61 ---------------------RNDFTLTINGNKV-IFDAVFIGIHGTPGEDGRLQGYFEM 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGL-NIAPFITLTRANRHNISFAEVESKLGLP 181 +PF ++ SA +K +++ G+ N++ + + + +I + +L LP Sbjct: 99 LGIPFTSCGMVTSALTFNKSYCNKVVASLGVVNVSKSVHIFKDQPFDIQ--AILQELKLP 156 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDNPQ 240 +FVKPA GSS+G+SKV + E+ A A++ AF D ++++E+ +KGREI C + N Sbjct: 157 VFVKPAEGGSSIGMSKVNTAEELAPAIEKAFNEDVQILIEEFVKGREITCGLYRSNGAFT 216 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI+ + +F+ Y+ KY ++ V PA EI ++I+ A + Y L C G+ R Sbjct: 217 VLPVTEIISSKEFFDYEAKYTP-GVSREVTPAEAPNEIVNQIQETAKKLYNKLNCRGIVR 275 Query: 301 VD-VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +D ++ N + E+NT+PG + S+ P+ +A+G + LIE L + Sbjct: 276 MDFIWEEASNRLFFLEVNTMPGQSENSIVPQQVRAAGKTLQEFYGTLIEECLRK 329 >UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P076_9BACE Length = 350 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 111/356 (31%), Positives = 174/356 (48%), Gaps = 21/356 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVL----LGIDKQGQWHVSDASNYLL 59 +++ ++ GG S E VSL + + +A+ +V L G+ ++G ++ S Sbjct: 1 MKIVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKG----AELSGLFG 56 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG----QPLPTVDVIFPIVHGTLGEDGS 115 H + A LA V D+ G + D++F +HG+ GEDG Sbjct: 57 APISEEHKRVSRQAPDLAAVKASRTEG-GDSMFGPGVLELCGMADLVFLALHGSCGEDGR 115 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 +Q + +P+ GS L SA MDKD+TKR++ D ++ + T++ E Sbjct: 116 VQAAFDLMGIPYTGSGYLGSAIAMDKDLTKRMVADV-VSTPGWKTVSYTADDIDGLVETA 174 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 LPL VKP GSS+GVS + E+ A+ + ++EQ +KGRE++ A+L Sbjct: 175 R---LPLVVKPVASGSSIGVSIAHTAEELRTALTEGLALGGRTVLEQYVKGRELQVAILE 231 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + +A EI+ FY Y+ KY A+ V PA I+PE K+R AV+ Y+TLG Sbjct: 232 D---KALPSIEIIPKQGFYDYENKY-QPGAAEEVCPADISPEAEQKLRDAAVRVYETLGL 287 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 A +R D L + E EINTLPG T S+ P+ A G+ Y L R+++ +L Sbjct: 288 AVYSRADFILDADGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVDASL 343 >UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W8_9ZZZZ Length = 301 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 108/350 (30%), Positives = 170/350 (48%), Gaps = 55/350 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL + K + A+ K+ ++VV D Q + + + L + P Sbjct: 4 KVLVLMGGFSAEREVSLTTGKCVCAALKKAGYEVV--SHDLQNGFELVET----LKKEKP 57 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 DV+F +HG GEDG +QG L V Sbjct: 58 -----------------------------------DVVFNALHGNWGEDGEIQGFLDVLQ 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT-RANRHNISFAEVESKLGLPLF 183 +P+ S + AS MDK +TK L + G+ + +T R + +F L +P Sbjct: 83 VPYTHSGLKASVLGMDKSLTKELASENGIKVPQGEKMTFRKFKAEGTF------LKMPYV 136 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP + GSSVGV + +E A + +E D ++++E+ I G+E+ C VLG+ QA Sbjct: 137 VKPVSDGSSVGVYIIRKKED---AEAVRYEDDREILIEEFIDGKELTCMVLGS---QAHV 190 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 E+ + +FY Y KY + ++PA I E ++ + A + LGC ++R D Sbjct: 191 VTELRASDEFYDYHAKYT-AGATQHILPAEIPEEAANRCKLYAEHMHNILGCRSVSRCDF 249 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 PE+ VV+ EINT PG T++S+ P+ + G+GY L + L+E A R Sbjct: 250 RYNPEDGVVLLEINTAPGMTDLSLVPEQAKYIGIGYERLCSYLVENASCR 299 >UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Tax=Photobacterium RepID=Q6LQQ8_PHOPR Length = 308 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 170/350 (48%), Gaps = 55/350 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+G++ GG+S+E VSL+S + +V AI+ + + + D Sbjct: 5 MRIGVLLGGESSERSVSLKSGECVVKAIESLGHEAISI---------------------D 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P HI + +D +F +HG +GE G +Q +L + Sbjct: 44 PKHIDVTLMG----------------------FFKLDKVFIALHGGIGESGHVQALLDLL 81 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG---L 180 +P+ GS LASA ++K +K + + L A ++TL + + +++++L Sbjct: 82 KIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHK----HAPIEDIKAQLSSVVC 137 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP +QG S+GVSKV + AV AFE+D +++E I GRE CAVL N P Sbjct: 138 PVVVKPISQGCSIGVSKVDNNADLLEAVITAFEYDDDILIESFIAGREYTCAVL-NGKPL 196 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + + F+ YD K+ A P+ + E ++A+A+ AY LGC G R Sbjct: 197 PIV---QIRSEQFFDYDAKF-GSQSATYHCPSDLTSEQERDMQALALNAYNALGCRGWGR 252 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 VD L +V + E+NT+PG T S++P + +GL + +I+ L++ A Sbjct: 253 VDTILDESGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSLLDSA 302 >UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacteria RepID=DDL_PSEA6 Length = 318 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 104/338 (30%), Positives = 174/338 (51%), Gaps = 47/338 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++FGG+SAE EVSL+S + ++ A+ + G++ G DP Sbjct: 19 KVAVMFGGRSAEREVSLRSGQAVLSAL-------ISAGVNAHG--------------FDP 57 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 A L HQL++ + D + ++HG GEDGSLQG L+ N Sbjct: 58 AESEL---------------HQLVEQK-------FDRVLIMLHGRGGEDGSLQGALQQMN 95 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G+ VL SA CMDK +K++ + GL A + + + + + +++ S+LG + V Sbjct: 96 MPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNAANCSDIMSRLGDLVMV 155 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSS+G++KV++ +Q A A+ AFE+D KV++EQ I+G E ++L N +A Sbjct: 156 KPAQEGSSIGMAKVSNAQQLAAAIQQAFEYDDKVLLEQFIQGSEYTVSLL---NGEAMPS 212 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + DFY Y+ KY + + P+ + E + +A+ A+ + +G RVD Sbjct: 213 ISMSTPRDFYDYEAKY-QSNTTEYFCPSGLPAEQEGLLARLALDAFDAVAGSGWGRVDFM 271 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 + + E NT+PG T S+ P + +GL + L Sbjct: 272 QDMLGQFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQL 309 >UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteobacteria RepID=B3PCL8_CELJU Length = 328 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 113/356 (31%), Positives = 173/356 (48%), Gaps = 63/356 (17%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RVG+++GG SAE E+SLQS ++ A++ + GID Sbjct: 18 RVGVLYGGLSAEREISLQSGAAVIAALEDA-------GID-------------------- 50 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 H+A+ +A I A N +D F ++HG GEDG +Q +L + Sbjct: 51 -HVAIDVGDNVIAD---------IQAAN------IDRAFLMLHGPGGEDGRIQALLEFLH 94 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIA------PFITLTRANRHNISFAEVESKL 178 +P+ GSDV +SA MDK TK L + A F LTR + F +L Sbjct: 95 IPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVLTRES----DFVAELKRL 150 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GND 237 G + VKPAN+GSS+G+S+V + E A A ++ V+ E+ I G E A+L G Sbjct: 151 GGEVMVKPANEGSSIGMSRVKTAEDLQAAFVKATDYQGSVLAERLIVGAEYTVAILDGEA 210 Query: 238 NPQASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 P I L +D FY ++ KYI ED + + P ++ E +++ +A+ A+ LGC Sbjct: 211 LP------PIRLETDHSFYDFNAKYIAED-TRYICPCGLSAEKEQELKQLALTAFNVLGC 263 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G RVDV + + E+NT PG T+ S+ P +A GL +T+L+ ++ +L Sbjct: 264 RGWGRVDVMADAQQNFYLLEVNTAPGMTSHSLVPMAAKAVGLSFTELVVTILRASL 319 >UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W7_9ZZZZ Length = 348 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 109/365 (29%), Positives = 184/365 (50%), Gaps = 29/365 (7%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLG------IDKQGQWHVSDA--- 54 +++ ++ GG+S+E +VSL + + A+ ++ DVVL+ +D + + A Sbjct: 1 MKIAVLCGGRSSERDVSLSTGIQVARALRETGHDVVLVDACVDFPLDCRPEEVFEKALPI 60 Query: 55 SNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDG 114 N+ + A P A+ GK+ ++ + D++F +HG GE+G Sbjct: 61 ENHAIGAAAPCVERFFDRASGFF---GKNVLEICK--------SADIVFNALHGDEGENG 109 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 LQ + + N+ + GS M+K ++K+L R G+ + L+ +++ AE+ Sbjct: 110 KLQAVFDLLNICYTGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSESDKCRA--AEL 167 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 KLGLP VKPA+ GSSVGVS V + +++ A+D AF +H VIVE+ IKGRE ++ Sbjct: 168 CEKLGLPCVVKPASLGSSVGVSIVRTIDEFFTALDSAFSLEHTVIVEKYIKGREFAVGIV 227 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKV-VVPAAIAPEINDKIRAIAVQAYQTL 293 G+ A EI+ FY Y KY + G V + PA I + +++ + ++ L Sbjct: 228 GSRVLPAI---EIIPKHGFYDYKNKY--QPGCTVEICPADIDSDTAERMAEATRKVFRVL 282 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR D F+ EN + E NTLPG T +S+ P+ A L + L+ +I+ +L Sbjct: 283 GLGAYARAD-FMVDENGIYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIKESLLL 341 Query: 354 HAADN 358 A + Sbjct: 342 RATER 346 >UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYH7_9PROT Length = 307 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 159/346 (45%), Gaps = 61/346 (17%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R G++ GG SAE EVSL+S ++DA+ + D V GID Q W AD Sbjct: 13 RTGVLMGGTSAEREVSLRSGAAVLDALRAAGVDAV--GIDLQQNW-----------ADQI 59 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 A A +D F +HGTLGEDG +QG+L + Sbjct: 60 AKAA------------------------------IDTAFIALHGTLGEDGCVQGLLEIMG 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS V+ASA CM+K + K++L AGL+ I + EV P+FV Sbjct: 90 IPYTGSHVMASALCMNKRLCKQVLGQAGLSTPMDIRI-----------EVTGPERYPVFV 138 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP +GSSVG+ +++S++++ L + + E + G EI +VL A Sbjct: 139 KPVAEGSSVGLHRISSQQEWQ---ALNIQSPAAWMAEMPVNGVEIAVSVLAG---VALMP 192 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E+ S Y Y +KY + PA + E A +A GC G RVD+ Sbjct: 193 VEVAPKSGVYDYASKY-TVGATEYFCPARLPMETVRYCMDCAEKAVAACGCTGAPRVDMI 251 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + E VI EINTLPG T S+ PK +G+ + L R++E A Sbjct: 252 VGSGGEAVILEINTLPGMTATSLLPKAAAVAGIDFQTLCLRILETA 297 >UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsieae RepID=DDL_RICCK Length = 354 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 109/350 (31%), Positives = 174/350 (49%), Gaps = 56/350 (16%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +V GG SAE EVSL S+K + A+ + V + D Sbjct: 55 KKHIALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFI--------------------D 94 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 A IA + Q +P D++F +HGT GEDG L G+L + Sbjct: 95 MGADIAFK-------------------LQEIKP----DIVFNCLHGTYGEDGCLSGLLNI 131 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ S VL+SA DK ++ +N+A I + +++ I + P Sbjct: 132 MRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSDNIKI------EPMKRPY 185 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP QGSS+G+ + E+ + A + F + +VI+E+ IKGRE++ AVL N +A Sbjct: 186 VIKPITQGSSIGIEVIFEEDDFNFA-NYDFPYGDQVIIEKYIKGRELQVAVL---NGKAL 241 Query: 243 TCGEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI +L + FY Y+TKY E A+ + PA I + DK+ + + Y+T+ C G ARV Sbjct: 242 GVLEIKLLKNRFYDYETKY-TEGFAEHLCPAPIPTNLYDKLLIESEKIYKTMNCKGPARV 300 Query: 302 DVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + L + N++ EINT PG T +S+ P++ +G+ +T+LI +I+ A Sbjct: 301 EFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKAA 350 >UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4Z4D3_EUBE2 Length = 382 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 107/362 (29%), Positives = 182/362 (50%), Gaps = 27/362 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDV----VLLGIDKQGQWHVSDASNY 57 E +R+ ++ GG S E +VSL + + +++ ++ + + LG+D S+ + Sbjct: 38 EIMRIVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDD------SEVKTF 91 Query: 58 LLNADDPAHIA---LRPSATSLAQVPGKHE-HQLIDAQNGQPL-PTVDVIFPIVHGTLGE 112 +D ++ + +A A+V + E + +N L D++F +HG+ GE Sbjct: 92 FTEKNDLGELSDNLKKKTADIPAEVKRRTEARESFFGRNVLELCKEADMVFMGLHGSNGE 151 Query: 113 DGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA 172 DG +Q + + + G+D L+SA M K++ K++L G+ + +TL + H I + Sbjct: 152 DGKVQATFDLLGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGVTLHKG--HKIEY- 208 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 + P VKP GSSVGVS +E+++ A+D AF ++ V+VE+ + GRE A Sbjct: 209 -----VPFPCVVKPCCGGSSVGVSIAHNEKEFEDALDEAFSYEDTVLVEEFVDGREFSVA 263 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 VL + +A EI FY Y KY K PA I +I +++ A + Q Sbjct: 264 VL---DGKALPVIEIEPLEGFYDYKNKY-KAGSTKETCPANIPEDIASQMQFWAEKCCQA 319 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G ARVD L N + EINTLPG T+ S+ P+ A G+ Y +L ++IE++L Sbjct: 320 AGVTTYARVDELLDKNNNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIEISLA 379 Query: 353 RH 354 ++ Sbjct: 380 KY 381 >UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKY4_9GAMM Length = 313 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 108/351 (30%), Positives = 159/351 (45%), Gaps = 50/351 (14%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 E RV ++ GG S E ++SL+S ++ A+ + D H D + Sbjct: 8 EYGRVAVLMGGWSGERDISLKSGNAVLAALRRQGVDA-----------HAVDLT------ 50 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 R +A +A L D +F +HG GEDG+LQG L Sbjct: 51 --------RETARCMA------------------LEGYDRVFIALHGECGEDGTLQGCLD 84 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P+ G+ VL SA MDK KRL L AP+ LT V LGLP Sbjct: 85 MGGMPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLT----PGFDPEAVADALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKPA GSS+G+++V A + A +V EQ I GRE AVLGN+ P Sbjct: 141 LIVKPARGGSSLGITRVDRVADLPAAFEAARVQPGQVFAEQWITGREFTVAVLGNE-PLP 199 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI S FY Y KY +D + P ++ +++++A+ A+ L G RV Sbjct: 200 VI--EIRAASGFYDYHAKYEADDTGYLCPPPDLSRSAQLELQSLAIAAFAALEGCGWGRV 257 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 D+ E + E+NT+PG T S+ PK +G+ + +L R+++ + E Sbjct: 258 DILQDEHGENFLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRILDSSFE 308 >UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT Length = 332 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 108/351 (30%), Positives = 178/351 (50%), Gaps = 32/351 (9%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + IV GG S+EH+VS++S + + DK R+++ ++ + K W+V Sbjct: 5 KRTIAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDV-KGIDWNVE---------- 53 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 P SLA + K++ + NG+ + D + +HG GE+G +QG + Sbjct: 54 -------LPDG-SLAPID-KNDFSFV--MNGERVE-FDYAYITIHGQPGENGVMQGYFDL 101 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ VL A DK V LR G+ +A I L R ++ AE+E +LG+P Sbjct: 102 IQIPYSTGGVLVEALTFDKYVLNNYLRGFGIKVADSILLRRGEEYDE--AEIEKRLGMPC 159 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQA 241 FVKPA GSS GVSKV + +Q A A+ +AF +V++E + G EI V D Sbjct: 160 FVKPAADGSSFGVSKVKNIDQLAPALRVAFMQSDEVMIEAFMDGMEISQGVYKTKDKAVV 219 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 E+V +++F+ Y+ KY + + + PA ++ E ++ A Y L G+ R+ Sbjct: 220 FPATEVVTSNEFFDYNAKYNGQ--VEEITPARMSDETAKRVAAETSCIYDILHANGIIRI 277 Query: 302 DVFLTPENEV--VIN--EINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 D ++ + + VIN EINT PG T S P+ +A+GL ++++ ++E Sbjct: 278 DYIISKDKDGKDVINMLEINTTPGMTVTSFIPQQVRAAGLDIKNVLSDIVE 328 >UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6C5_9BACT Length = 334 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 27/276 (9%) Query: 99 VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF 158 +DV F +HG GEDG +Q +L V +P+ GS V AS MDK +KR DAGL + Sbjct: 56 IDVAFIALHGYFGEDGRVQQLLEVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEY 115 Query: 159 ITLTRANRHNISFAEVESKL---GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD 215 L + ++ A++E ++ GLP+ +KP N GSS+GVS + + V A + Sbjct: 116 FLLKKP----VNLADIEQEIQEFGLPVVIKPTNGGSSIGVSIIKEGNNFHYHVGEALKCG 171 Query: 216 HKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIA 275 + VE+ + GRE +L + ++ EI + DF+ Y+ KY V+ Sbjct: 172 DEAFVERYVSGREFTIGIL---DSRSLPIIEICVADDFFDYNAKYNSGKTRYFVINKTFE 228 Query: 276 PEIN-----------------DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 + N DK + +A++A+ +GC G +RVD+ L +N+ I E+NT Sbjct: 229 NKTNILNTPCCDVGFLDAALYDKAQELAIEAHNAIGCRGFSRVDILLDNKNDFYILEVNT 288 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +PGFT S+ P +A+ + +T L ++++LA +++ Sbjct: 289 IPGFTEKSLLPMAARAADISFTSLCEKIVDLASQKN 324 >UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes RepID=A9KQG5_CLOPH Length = 340 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 110/352 (31%), Positives = 171/352 (48%), Gaps = 32/352 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++V ++ GG S E EVSL S I +A+ + ++V+LL + + D +N D Sbjct: 1 MKVVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDL----YLGIKDVTNI-----D 51 Query: 64 PAHIALRPSATSLAQVPGKHEHQLI----DAQNGQPL---------PTVDVIFPIVHGTL 110 + QVP K E L D+ NG L D +F +HG++ Sbjct: 52 SLFRKMEDQNPYQYQVP-KEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSI 110 Query: 111 GEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS 170 GE+G LQ M + + + GS + S MDK ++K +++ G+ +I Sbjct: 111 GENGQLQAMFDIYGISYTGSGYIGSLLAMDKGLSKVIMQKHGIETPDYIVADLTEEQ--- 167 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 E+E L LP +KP + GSSVGVS V S+E+ A+D A ++++KV++E+ I GRE Sbjct: 168 --ELEKTLMLPCVIKPLSCGSSVGVSIVRSQEELGKALDYAKKYENKVLIEELIVGREFS 225 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +L N A EI+ + FY Y KY A V PA + EI+ K++ A++ + Sbjct: 226 VGIL---NHHALPLIEIIPKTGFYDYTNKY-QAGMATEVCPAQLEDEISIKMQEAALKVH 281 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 + L +RVD L + E NTLPG T S+ P+ A G+ Y+ L Sbjct: 282 EVLQLGFYSRVDFLLKEDGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKL 333 >UniRef50_C0BG03 D-alanine--D-alanine ligase n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BG03_9BACT Length = 328 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 177/355 (49%), Gaps = 29/355 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K ++G+V GG ++E ++SL S K + D +D+S ++V L+ I+ ++ ++ N Sbjct: 2 MGKKKLGVVCGGFTSEFQISLLSGKTVFDNLDRSLWEVFLITIN---------SNEWVAN 52 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D+ H ++ +L Q G + +DVIF +HG GE+G L + Sbjct: 53 DDNGNHYSVSKGDFTL--------------QIGNDIVFLDVIFNSIHGAPGENGQLAALW 98 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + N+PF D SA +K +LR+ + A ++ R ++ I ++E +G Sbjct: 99 ELLNIPFSSCDSYTSALTYNKRDCLSVLREINIPTAKHFSIDRNDK--IDLEKIEKAVGF 156 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNP 239 P FVK GSS GV KV + A+ AF+ D +VI+E ++GRE+ V + Sbjct: 157 PCFVKANRAGSSFGVFKVKKKSNLEQALQKAFQEDSQVIIESALEGREVSVGVAKLRGDI 216 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + EI+ ++F+ Y KY E ++ + PA I E +++ + + Y LG G+ Sbjct: 217 KVLPVTEIITENEFFDYAAKY--EGKSQEITPAQIPIEWKEEVEKRSKEIYHKLGLKGVV 274 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 R + F+ + + EINT+PGFT S+ P+ A G+ ++ L+ L+++ Sbjct: 275 RSE-FIFVDGVPHLLEINTVPGFTQKSIIPQQALAMGIELSEFFNLLLLEVLDKN 328 >UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriaceae RepID=C7NBV7_LEPBD Length = 308 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 100/354 (28%), Positives = 168/354 (47%), Gaps = 51/354 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVG++ GG S E EVSL++ IV +++ +++V + ID + Sbjct: 1 MSKLRVGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSE-------------- 46 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 K + + N +D ++ +HG GEDG +Q +L Sbjct: 47 ---------------------KEVFEKVKELN------LDFVYIALHGVFGEDGRIQAIL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + + G V++SA CMDK+ +KR++ G+ IA + ++ + F ++ +LG Sbjct: 80 QSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVG--ETVDFETIKKELGN 137 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 + VKP + GSS+GVS V ++E+ ++L F D + ++E+ + G EI V+ D Sbjct: 138 RVVVKPNSGGSSIGVSFVENQEELEKGLELVFGMDKEALIEEVLHGVEISVPVI--DGKV 195 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVV--VPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 T L D++ Y++KY + V P + EIN A +Y L C G Sbjct: 196 FPTIRIEALAGDYFDYESKYAKGGANEYVFEFPEEVQAEIN----KFAKDSYYGLKCEGF 251 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 AR+D + E E+NT PG T+ S+ PK + G Y + LIE +++ Sbjct: 252 ARIDFMVVNEETPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTLDLLIESSIK 305 >UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteobacterium KB13 RepID=B6BWF0_9PROT Length = 299 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 146/269 (54%), Gaps = 9/269 (3%) Query: 83 HEHQLIDAQNGQ--PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 +E LID N L D F +HG GEDG +Q +L + +PF GS AS M+ Sbjct: 36 YEVSLIDPINTDLCSLVNYDAAFICLHGKNGEDGKIQSLLELLKVPFTGSASTASMLAMN 95 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K +K + + L F+ L N+ N+ + ++ + L P VKP++ GSS G++ V + Sbjct: 96 KYYSKLVWNNHALITPKFLIL---NKTNLDYKKIITHLSDPFIVKPSSSGSSFGINLVKN 152 Query: 201 EEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 ++ +A A ++D VI E+ I+GRE ++LGN ++ EI ++FY Y+ KY Sbjct: 153 KDDLILAFTDASKYDPTVIAEEFIEGREFTVSILGN---KSLGVLEITTKNEFYDYNAKY 209 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 + + P + PE+ +K+ IA+ A+ ++GC+G RVD + + + E+NT+P Sbjct: 210 VSNETI-FSKPTDLNPEVLEKMENIALSAFISIGCSGWGRVDFMMDKKFNFYLIEVNTVP 268 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIEL 349 G T+ S++P + +GL + + +++L Sbjct: 269 GMTDHSLFPLAARNAGLNFEQTVQHIVDL 297 >UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_HALHL Length = 304 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 106/347 (30%), Positives = 164/347 (47%), Gaps = 55/347 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG SAE ++SL+S I+ A+ + +D A DP Sbjct: 12 RVAVLMGGTSAERDISLRSGGAILAALQRCGYDA---------------------EAYDP 50 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 AL + L DV+F +HG GEDG++QG+L + Sbjct: 51 RDRAL------------------------EGLRGYDVVFIALHGRGGEDGTVQGLLDLLG 86 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VL SA MDK KRL + +GL P L +R + + +G P+ V Sbjct: 87 IPYTGSGVLGSALGMDKWRCKRLWQGSGLPT-PAGQLLTGDRPVL-----DEGVGYPVIV 140 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSS+G+S+V E+ A A +A +D V+ E ++G E A+LG+ QA Sbjct: 141 KPAREGSSLGMSRVEGPEELAEAYRVAAAYDDTVLAEAWVEGEEYTVALLGD---QALPS 197 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + F+ Y KY ED P+ + PE ++ A+ +A+ G G RVDV Sbjct: 198 IRLETPHAFFDYAAKYQAEDTGH-HCPSGLGPEEEAELGALCREAFIASGGNGWGRVDVM 256 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + E+NT+PG T+ S+ P +G+G+ +L+ R++ AL Sbjct: 257 RDTGGRWWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARILGEAL 303 >UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomonadales RepID=DDL_ERYLH Length = 323 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 170/361 (47%), Gaps = 60/361 (16%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KL V ++ GG + E EVSL S + + A++K V + +D+Q +++A+ Sbjct: 6 KLHVVVLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAP------ 59 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 DV+F +HG GEDG++QGML + Sbjct: 60 -------------------------------------DVVFNALHGVPGEDGTVQGMLDL 82 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ S + S +DK++TK+ L G+ + + + + + L P Sbjct: 83 MGVPYTHSGLATSVIAIDKELTKQQLVPRGIPMPGGRIVQSEDLYQ------QDPLARPY 136 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDL----AFEFDHKVIVEQGIKGREIECAVLGNDN 238 +KP N+GSSVGV+ VT E Y + ++ +++ E I+GRE+ AV+G Sbjct: 137 VLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFRELLAEPFIRGRELTTAVVGG-- 194 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 QA E+ S FY +D KY D + V PA I PEI + A++A++ LGC G Sbjct: 195 -QALAVTELKPKSGFYDFDAKYTD-GMTEHVCPADIPPEIEALCKKYALEAHRILGCRGT 252 Query: 299 ARVDVFLTPE---NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +R D E + + + E NT PG T +S+ P+ +G+ Y DL+ ++E ALE A Sbjct: 253 SRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSYEDLVEAIVEAALEHFA 312 Query: 356 A 356 A Sbjct: 313 A 313 >UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular organisms RepID=DDL_RHOFD Length = 346 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 113/354 (31%), Positives = 168/354 (47%), Gaps = 50/354 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ A+ + G+D Sbjct: 28 KVAVLMGGASAEREVSLMSGQGVLQAL-------ISQGVD-------------------- 60 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 AH A P+ LA++ + F +HG GEDG++QG L + Sbjct: 61 AH-AFDPAERDLAELK---------------VEGFSHCFIALHGRFGEDGTVQGALELLG 104 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS V+AS+ +DK +TKR+ R GL + R + +E + LG P+ V Sbjct: 105 IPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEW----RQVDSAAATSEAFAALGSPMIV 160 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NPQAST 243 KP +GS++G++KVT EQ A LA D V+ EQ +KG E+ +LG+ A Sbjct: 161 KPDREGSTIGLTKVTQIEQCGAAYALAARHDAMVLCEQFVKGDEVTIPLLGSGAGAHALP 220 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 IV Y Y KY D + +VPA + I+ +A++AYQ LGC G ARVDV Sbjct: 221 VIRIVAPDGNYDYQNKYFT-DTTQYLVPANLPAGEEAHIQQLALKAYQVLGCRGWARVDV 279 Query: 304 FLTPENEV-VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + + EINT PG T S+ P +A+G+ Y L ++ A +AA Sbjct: 280 MIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALCLEVLRHATLDYAA 333 >UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacteria RepID=DDL_XYLFT Length = 304 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 109/354 (30%), Positives = 174/354 (49%), Gaps = 60/354 (16%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG SAE EVSL S +N+++ + + G+D Q Sbjct: 4 RVAVLLGGTSAEREVSLLSGRNVLEVLR-------MRGVDAQ------------------ 38 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHG--TLGEDGSLQGMLRV 122 S+ VP + L++ + D +F ++HG GEDG +QG+++ Sbjct: 39 ----------SVDGVPALAQ-ALVERR-------FDRVFNVLHGHNGGGEDGVVQGLMQA 80 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ GSDVL SA MDK TK++ GL + +L+ + + LG P+ Sbjct: 81 FGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLS-VCATAVEVRKAVEMLGFPV 139 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KPA +GSSVGVS+V + E AV LA ++ ++++EQ I+G E+ ++L + A Sbjct: 140 IIKPAKEGSSVGVSRVFALEHLEEAVALAARYEGELLMEQLIEGDELTVSIL---DEMAL 196 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIND----KIRAIAVQAYQTLGCAGM 298 IV +Y Y+ KY+ ED V P ++D +I +A+ A+ ++GC G Sbjct: 197 PSIRIVPQGQWYDYNAKYLAEDTQYV------CPGLDDVAEAEIAQLALAAFHSVGCRGW 250 Query: 299 ARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 RVDV + E+NT PG T S+ PK G+G+ DL+ R++E L Sbjct: 251 GRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRILEQTL 304 >UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aphidicola RepID=DDL_BUCBP Length = 309 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 58/353 (16%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG S E +SL S NI++++ KS V ID + D P Sbjct: 7 KIAVLLGGTSQERNISLISGYNILNSLLKSGIHAV--AIDTK---------------DFP 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + Q+P HQ F +HG GEDG++Q +L+ N Sbjct: 50 -----------ITQLP----HQKFTKA-----------FIALHGRDGEDGTIQSVLKYLN 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS------FAEVESKL 178 +PF GS L SA ++K TK L + L + P++ + N+H + F + S L Sbjct: 84 IPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHI---NKHEFNKKFLQKFKKNISLL 140 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 GLP+ VKP +GSS+G++ V S E A AF FD+ +++E+ I G E ++LG Sbjct: 141 GLPIIVKPNQEGSSIGITIVYSYETLYKACKTAFIFDNSILIEKFIYGEEYTISILGKKI 200 Query: 239 -PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P C E + FY Y++KY+ + P+ + +++ I + A+ + G Sbjct: 201 LPIIRICPE----NTFYNYNSKYLS-NRTTYFCPSGLNKLKELELKKITLTAWNIIDGTG 255 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 RVDV + +N+ + E NT PG T+ S++P + +G+ Y L+ +++ELA Sbjct: 256 WGRVDVIMDYKNKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQKILELA 308 >UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aphidicola RepID=B6CM19_9ENTR Length = 310 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 145/251 (57%), Gaps = 7/251 (2%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 D + +HG GEDGS+QG+L +P+ GS ++AS+ +DK TK L + AGL + P + Sbjct: 56 DTAYIALHGKGGEDGSIQGVLEYLKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDV 115 Query: 160 TLTRAN-RHNIS--FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH 216 + + + N+S + KL PL VKP NQGSS+G++ V + Q A+++AF + + Sbjct: 116 YIQKKDILKNLSSLLKKRFFKLDFPLLVKPNNQGSSIGITLVYLKNQLKNAIEVAFNYSN 175 Query: 217 KVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP 276 ++VEQ IKG E ++L + + +I+ ++FY + +KY + + P+ + Sbjct: 176 TILVEQFIKGTEYTVSIL---DEKILPSIQIITKNNFYDFASKY-QLSSTQYLCPSGLNL 231 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASG 336 + K++ IA +A+ TLGC G R+DV L N+ + EINT+PG TN S+ P A G Sbjct: 232 KQEKKLKKIAKKAWDTLGCNGCGRIDVILDSNNKFWLLEINTIPGMTNRSLLPISANAIG 291 Query: 337 LGYTDLITRLI 347 + + +L+ ++ Sbjct: 292 MSFDELVLNIL 302 >UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFZ2_9BACT Length = 298 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/350 (27%), Positives = 163/350 (46%), Gaps = 63/350 (18%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ +V +++GG SAE EVSL+S + D++ + + VL+ +D+ +S+A Sbjct: 1 MKDKKVAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISEAG----- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F +HGT GEDG +QGML Sbjct: 56 --------------------------------------ADVCFIALHGTYGEDGRVQGML 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS A+ DK ++K G+ +I L + G+ Sbjct: 78 DIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELNAPKK------------GM 125 Query: 181 PL---FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 P +KPA QGSSVG+ V +EE+Y ++ AF++D KVIVE+ IKG E+ ++L + Sbjct: 126 PFECCVIKPARQGSSVGIHIVQNEEEYFSKLEDAFKYDSKVIVEECIKGVELTVSILDGE 185 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 C I Y Y++KY + + V ++ + + A++A+ LGC+G Sbjct: 186 TLPV-IC--IRPKKGVYDYESKYT-KGMTEYVFDTGLSASETECVENAAMKAFDVLGCSG 241 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 R D+ V+ E+NTLPG T S+ PK +G+ + +++ +++ Sbjct: 242 YGRADIMYDGRTPYVL-EVNTLPGMTETSLLPKAANKAGMSFDNMVEKML 290 >UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacteria RepID=DDL_PSYWF Length = 332 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 102/347 (29%), Positives = 159/347 (45%), Gaps = 51/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V +VFGG S E VSL S ++ A+ D Q V++ NY Sbjct: 37 KVAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFDPKDQ---DVTELKNY------- 86 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 D +F ++HG GEDG LQG+L Sbjct: 87 -----------------------------------DRVFNVLHGRGGEDGQLQGLLDWLG 111 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP GS VLASA MDK TK+L GL+ APF L + + ++ + LGLPL V Sbjct: 112 LPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVLGA----DTDWQQIVNTLGLPLIV 167 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP ++GSS+G+SKV + ++ A ++A V+ E+ I GRE ++ +D Sbjct: 168 KPVHEGSSIGMSKVNTLDELPKAYEVAAGCGDVVMAEKWITGREFTIVII-DDEAYPVIR 226 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + S+FY Y+ KY D + +P ++ E ++A+++ A++ + G R+D Sbjct: 227 LQPADISNFYDYEAKYNRND-TQYHIPCGLSAEEEAHLQALSLAAFKAVDAKGWGRIDAM 285 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 E + EINT+PG T+ S+ P +A G+ + L ++ L Sbjct: 286 QDEEGNFWLLEINTVPGMTSHSLVPMAAKARGMNFEQLCWHILAQTL 332 >UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFD6_KOSOT Length = 305 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 101/349 (28%), Positives = 175/349 (50%), Gaps = 53/349 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R+ +++GG S E +SL+S N+++A++K LG ++ DA + L AD+ Sbjct: 7 RITVLYGGLSKERPISLKSGSNVINALEK-------LG-------YIVDAFD--LRADNI 50 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +A L D++F +HG GEDG +Q +L + Sbjct: 51 TELA--------------------------KLRDTDLVFIALHGKFGEDGKIQSLLELFG 84 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 + ++GSD L SA C +K++T +LL + IT+ R + S E+E P + Sbjct: 85 IEYIGSDSLVSAICFNKNLTYKLLSNT-------ITMPRW-KTITSEEELEGWKHFPAVI 136 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDNPQAST 243 KPAN+GSS+GV + E+ + +I+E+ IKGRE+ +++ P Sbjct: 137 KPANEGSSIGVYICDTFEELQNKTTKVLKEYKTLILEEYIKGRELTISIIEKGGQPVVLP 196 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 E+ FY Y+ KY + +VPA I ++ ++I+ ++ + + LGC AR+D Sbjct: 197 ILELKPKRRFYDYEAKYT-AGLTEFIVPAPIDDKLKEEIKKLSKRIFTALGCRHFARIDG 255 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L EN+ E+NT+PG T++S P +A+G+G+ +LI +++ AL+ Sbjct: 256 ILK-ENQFYFLEVNTIPGLTDLSDLPVSARAAGMGFEELIDLIVKEALK 303 >UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp enzyme n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7C3_9GAMM Length = 309 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 104/357 (29%), Positives = 167/357 (46%), Gaps = 54/357 (15%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 + +R ++ GG +AE E+SLQS +N+ ++ + V + Sbjct: 6 LSGVRFAVLMGGAAAEREISLQSGENVASVLEAAGCPVTRI------------------- 46 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DPA Q L +D +F ++HG GEDG LQG+ Sbjct: 47 --DPAV-----------------------EQWADQLSDIDFVFNLLHGPGGEDGVLQGLF 81 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 V NLP+ GS VL SA MDK TK+L GL F LT + ++++ + G Sbjct: 82 DVMNLPYSGSGVLGSALTMDKARTKQLWSGMGLPTPDFTLLT----ADTDWSDLIERHG- 136 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 LFVKPA +GSS+G+SK ++ EQ A A + +I E + G E ++LG+ + Sbjct: 137 TLFVKPALEGSSIGMSKASTPEQLEAAWKRARAYKGGIIAECFVAGEEYTVSILGD---R 193 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A I S+FY +D KY+ D P+ + ++ A+A++A+ + A R Sbjct: 194 ALPAIRIEPASEFYDFDAKYV-SDNTGFFCPSGLTASDEAELSALALRAFYAVDAAVWGR 252 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE-RHAA 356 VDV + E+NT+PG T+ S+ P +A + D ++ + L++E R+A+ Sbjct: 253 VDVMRDISGAWQLLEVNTIPGMTSHSLVPMAARADSMTLIDFLSEIYRLSMEARYAS 309 >UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira RepID=C0QV33_BRAHW Length = 328 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/348 (27%), Positives = 173/348 (49%), Gaps = 43/348 (12%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG S+E EVSL+S +N+ A+ + FD + D+ Sbjct: 19 KIAVLHGGLSSEREVSLRSGQNVYKAL--TSFDEI---------------------KDNC 55 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 I ++ S + ++ + ++ + I+HGT GEDG++QG+L N Sbjct: 56 ILIDVKDSYELVKKLKENN---------------IEYCYNILHGTSGEDGTVQGLLESLN 100 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES-KLGLPLF 183 + + G ++L SA CM+K TKR+ + + ++ A F+ L N S + + PL Sbjct: 101 IKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFMLLKDVKEINDSGIKGSALTFNFPLI 160 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP + GSSVGV + ++ ++ V + + +E IKG+EI ++ D+ Sbjct: 161 LKPISDGSSVGVHLIKTKTEFESVVS-SIKDSENYFLEPYIKGKEITVGLVKQDDENIYV 219 Query: 244 CGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + + S + Y Y+ KY ++ +PA ++ EI +K+ +AY+ LGC+G++R+ Sbjct: 220 FPILGINSKNEIYDYEAKYT-PGKTEMEMPAKLSKEIENKVIETCKKAYKVLGCSGLSRI 278 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 D + +NEV + E+NT G TN S P + + L + DL+ ++ L Sbjct: 279 DAIVGNDNEVYLMEVNTQGGMTNTSDIPAMAKHINLDFNDLVLYILGL 326 >UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RepID=B5FI74_SALDC Length = 285 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 129 GSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLPLFVK 185 G V+ASA MDK +K L + AGL +AP++ LTRA E +++ LGLPL VK Sbjct: 64 GRGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLPLIVK 123 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 P+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + + Sbjct: 124 PSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEEILPSI--- 180 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+DV L Sbjct: 181 RIQPAGTFYDYEAKYLS-DETQYFCPAGLDASQEAALQSLVLQAWKALGCTGWGRIDVML 239 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 240 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 284 >UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteriaceae RepID=C6X2F8_FLAB3 Length = 339 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 105/355 (29%), Positives = 171/355 (48%), Gaps = 30/355 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K V +V GG S E+ VSL+S + I D++D+ ++V + + K +W+ D Sbjct: 12 MNKKNVAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKD-EWYFLDDRE---- 66 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +VP ++ +G + DV F I+HG GE+G LQ Sbjct: 67 ----------------QKVPVNKADFSVNLDSGFDV-KFDVCFNIIHGKPGENGELQAYW 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + G SA +K T +L G+ A + + + I + L L Sbjct: 110 DTIGQKYTGCGFYQSALTFNKKDTLAVLSKYGIPAAKSVYIRKG--EAIDEDGIIEDLKL 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKP GSS+G+SKV + ++ A+D AFE D +V++E + G E+ V+ + N + Sbjct: 168 PLFVKPNQSGSSLGISKVKDKSEFQKAIDFAFEQDDEVLIESFLDGMEVSVGVV-DFNGE 226 Query: 241 ASTCG--EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + G EIV +F+ Y+ KY E ++ + PA I E K+ IA +AY +LG +G Sbjct: 227 SIVLGITEIVSHKEFFDYEAKY--EGASEEITPARIDDETRQKVEEIAKKAYNSLGMSGF 284 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +R + + ++ E+NT PGF+ S+ P+ + G+ DL +E AL + Sbjct: 285 SRSEFIIMGGTPYML-EMNTNPGFSPASILPQQAKIYGISIKDLCGNEVEKALAK 338 >UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriaceae RepID=D1AUY0_STRM9 Length = 299 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 107/361 (29%), Positives = 178/361 (49%), Gaps = 74/361 (20%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQ-WHVSDASNYLLNAD 62 +R+G+++GG S E EVS+ + K I+ +DKS+++VV + I K+ + V D LN D Sbjct: 1 MRIGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISKKEDIFKVVD-----LNLD 55 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 A+IAL HG GE G +Q +L Sbjct: 56 -FAYIAL-------------------------------------HGEFGESGDVQAILET 77 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A + + GS +L+SA CMDKD+TK L +++G+ I + + NI F+++ LG + Sbjct: 78 AGIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKG--ENIKFSDL--NLGEKI 133 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF-DHKVIVEQGIKGREIECAVLGNDNPQA 241 +KP GSS+GV T++E+ ++ F+ +++V++E+ G EI ++ Sbjct: 134 ILKPNRGGSSIGVYFATNDEELEYGLNEIFKLGENEVLIEEMKSGIEISVPII------- 186 Query: 242 STCGEIV-------LTSDFYAYDTKYIDEDGAKVVV---PAAIAPEINDKIRAIAVQAYQ 291 G++ L F+ Y +KY + GAK V ++ EIND ++AY Sbjct: 187 --AGKVFPTLLIEPLKDTFFDYTSKY-ENGGAKEYVYFFEESLQNEIND----FTIKAYN 239 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + C G AR+D L +N+ E+NTLPG T S+ PK G Y++ + LI+ ++ Sbjct: 240 AVKCKGFARIDYILV-DNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSETLDLLIKESI 298 Query: 352 E 352 + Sbjct: 299 K 299 >UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W6_9ZZZZ Length = 343 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 111/357 (31%), Positives = 175/357 (49%), Gaps = 33/357 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDAS-------N 56 +++ ++ GG S E +VSL S I +++ +S V L + + +SD + Sbjct: 5 MKITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDAFTSDGNFM 64 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 Y + + P ALR A+VPG LI + D++F +HG +GEDGS+ Sbjct: 65 YTVPKEPPDLKALR------AEVPGS---ALIGDGVLELCRLSDIVFLALHGGMGEDGSI 115 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 Q L +P+ GSD A MDK ++K L R G+ A F L + + + Sbjct: 116 QAALSSMGIPYTGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKKGDSTD-------- 167 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV-LG 235 + LP VKP + GSSVGVS V ++E A A++ A++++ KV+ E I GRE V LG Sbjct: 168 GIPLPCVVKPCSCGSSVGVSIVDTKEALAGALETAYQYEEKVLAEDKICGREFSVGVLLG 227 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 P EI FY Y+ KY + + PA + + A+A++ ++ LG Sbjct: 228 RALPAI----EIRPKDGFYDYERKY-QSGMTEEICPADLPEAEAASLGALALKVHRALGL 282 Query: 296 AGMARVDVFLTPEN--EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +R+D F+ E + + E NTLPG T +S+ P+ A+G+GY L + + A Sbjct: 283 GSYSRID-FIREEKTGKFICLEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338 >UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXY6_HALNC Length = 324 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 166/339 (48%), Gaps = 50/339 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG S+E +SL+S + ++ A+ ++ DV + + + ++L Sbjct: 9 RVLLLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRR----------DFL------ 52 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +L+ A +P D F I+HG GEDG +Q +L + Sbjct: 53 --------------------PELLAAHQAKPF---DRAFIILHGRGGEDGQIQAVLELLG 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-ITLTRANRHNISFAEVESKLGLPLF 183 +P+ G+ + SA MDK KR+ R GL P+ + T H LGLP+ Sbjct: 90 IPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVVATEIEAHR-----ALDSLGLPVM 144 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP +GSSVGV+KV +Q A A A + +V++E+ I+G E ++LG +A Sbjct: 145 VKPVAEGSSVGVAKVDQPDQLAAAFREAARYG-QVMMERYIRGGEYTVSLLGG---RALP 200 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 + DFY +D KY+ D + +P+ ++ E ++AIA++A++ +G +G RVD Sbjct: 201 VIRLSTPHDFYDFDAKYLAND-TEYTIPSGLSAEEESAMQAIALKAFEQIGGSGWGRVDF 259 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 + + E+NT+PG T+ S+ P +A G+ +L Sbjct: 260 MRDEHGQNWLIEVNTVPGMTDHSLVPMAARAVGIEIEEL 298 >UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=DDL_DICNV Length = 310 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 107/353 (30%), Positives = 169/353 (47%), Gaps = 51/353 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +E +V +++GG S+E E+SL + + A+ + GID +LL+ Sbjct: 5 IELGKVAVLYGGNSSEREISLIGGRAVHAALCAA-------GIDA-----------HLLD 46 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DP I K EH F ++HG GEDG +Q +L Sbjct: 47 TGDPNRIWTL-----------KDEH-------------FSRAFVMLHGRGGEDGEIQAIL 82 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS VLA A MDK V K++ + AGL + + +T +R ++ + Sbjct: 83 QWLGIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPESRFETLVEQLHCQ--- 139 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 +KPA +GSSVGVS+V ++EQ A A+ A K++ E I GRE+ ++ ND Sbjct: 140 DFVIKPALEGSSVGVSRVKNQEQLAAAIPFAGGARAKIMAEPWIVGRELTYGIV-NDTVL 198 Query: 241 ASTCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + EIV + DFY YD KY + + PA I ++ + R IA A+Q +G G Sbjct: 199 PAI--EIVAGNDHDFYDYDAKY-HAANTQYLCPAPIDAALDARCREIAFAAFQAIGARGW 255 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 RVD+ + +N + EIN +PG T S+ P Q G+ ++ L+ ++ L Sbjct: 256 GRVDMIVDAQNRPYLLEINLVPGMTTHSLVPMAAQQIGMDFSALVQSILAQTL 308 >UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B634_THEAS Length = 316 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 106/350 (30%), Positives = 173/350 (49%), Gaps = 46/350 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++V + +GG S E EVSL+S + + +A+ LG +G L+AD Sbjct: 1 MKVLVAYGGDSPEREVSLRSGEAVKEALSS-------LGWTVEG-----------LDADS 42 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P + R A +G D++F +HG GEDG+LQ +L Sbjct: 43 PLRVVER-------------------ALSG----AFDLVFVALHGGWGEDGTLQCLLDTH 79 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ G A ACMDK++T+ +L G+ + I + + E+ + G L Sbjct: 80 RIPYTGPRWGACMACMDKEITRGVLLARGVRVPEGIPFDGSMDQGV-LLELLRRWGR-LV 137 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQAS 242 VKP GS+VG+ V + A+D AF +D +++VE+ I+GRE+ AV + P+A Sbjct: 138 VKPCRCGSTVGIGIVDHPSRLDRALDEAFRYDRRLVVERFIEGRELTVAVFDTPEGPKAL 197 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI S FY Y +KY + + + PA ++ + + + AV+AY+ +GC+ +RVD Sbjct: 198 PTVEIRPRSGFYDYSSKYT-KGMTEYLCPAPLSEQEAEAVARAAVEAYRAMGCSVYSRVD 256 Query: 303 VFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 V L E + E+NT PG T+ S+ PK A G + +++ R+ E +L Sbjct: 257 VRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDFPEMLRRICEASL 306 >UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteobacteria RepID=DDL_RHOP5 Length = 308 Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 172/353 (48%), Gaps = 59/353 (16%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++ V ++ GG S+E EVSL+S DA+++ F+V + + + D + L Sbjct: 3 KRKHVAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVAR-------DIATVLDQ- 54 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 LRP D ++HG GEDGS+QG+L Sbjct: 55 -------LRP----------------------------DSALMMLHGHPGEDGSIQGVLE 79 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 +P+ S VLASA M KD+ K +++ AG+ +A +TL+ R I+ V + P Sbjct: 80 TLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLS---RDEIARGHV---MEPP 133 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGIKGREIECAVLGNDNP 239 +KP GSSVGV +T + Q+ + + K++VE+ + G+E+ CAV+ Sbjct: 134 YVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDKLLVEKYVAGKELTCAVVKG--- 190 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + + EIV FY Y+ KY +K V+PA++ P + ++R + + A+ LGC G++ Sbjct: 191 EPTDVIEIVPMVRFYDYEAKY-SPGASKHVLPASLLPFVYQEVRRLTLAAHVALGCRGVS 249 Query: 300 RVDVFLTPENE----VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 R D E +V E+NT PG T S+ P+L +G+ + +L+ ++E Sbjct: 250 RADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGITFDELVQWMVE 302 >UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMF6_9DELT Length = 300 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 166/349 (47%), Gaps = 56/349 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG S E +VSL A I +A+ +V+ L + Q V+ A Sbjct: 1 MRVLLIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELVNKARE------- 53 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 D +HG GEDGS+QG+L Sbjct: 54 -----------------------------------ADAAIINLHGAPGEDGSIQGVLEDV 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE-SKLGLPL 182 LP+ GS V S ++K ++K+ + GL R + + F + + P+ Sbjct: 79 GLPYQGSGVRGSFLALNKALSKQFYANHGL---------RTPKGGLYFPQGRLHHVPPPV 129 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 KP GSS+ + ++E+ ++ + +H+++VE+ I G E+ CAVL N+ P Sbjct: 130 ICKPNQGGSSLDMQIFYNQEEMYSFLN-QVDSEHEILVEELINGHEVSCAVLDNE-PLPP 187 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 + V DF+ Y++KY D DGA + PA I+ E + I+ +++QA++ LG +R D Sbjct: 188 ILIQPV-KGDFFDYNSKY-DPDGAVEICPAPISQEASRSIQEMSLQAHRILGLRHYSRSD 245 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L ++ + I E NTLPG T S+ PK Q +G+G+T+LI RL+ LAL Sbjct: 246 FMLDQQDNIYILETNTLPGMTRTSLVPKAAQQAGIGFTELIARLLSLAL 294 >UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes RepID=C7G8P6_9FIRM Length = 351 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 105/363 (28%), Positives = 182/363 (50%), Gaps = 26/363 (7%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG S E +VS ++ + A+ ++ V+LL + D + D Sbjct: 1 MKIVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIF---DR 57 Query: 64 PAHIALRPS-----ATSLAQVPGKHEHQ---LIDAQNGQPLPTVDVIFPIVHGTLGEDGS 115 ++++ S A LA+V + Q + D++F +HG GE+G Sbjct: 58 SEEVSVKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGK 117 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 +Q + + + G+ L+SA MDK+++K+L AG+ ++ +A+ ++ Sbjct: 118 IQAAFDLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKAD-----CSDDI 172 Query: 176 SKLG--LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 +KLG P VKP GSS+GVS + E+Y A+D AF ++ +IVE+ +KGRE V Sbjct: 173 TKLGVQFPCVVKPCCGGSSIGVSIAHNAEEYKAALDEAFRWEENLIVEEYVKGREFSVGV 232 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKV-VVPAAIAPEINDKIRAIAVQAYQT 292 + +A EI FY Y KY + G+ V PA ++ + +K++ A Q Q Sbjct: 233 I---EGKALPIIEIAPVQGFYDYKNKY--KAGSAVETCPAELSEAVTEKMQHYAEQVAQV 287 Query: 293 LGCAGMARVDVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 LG +R D FL ENE + E NTLPG T S+ P+ Q G+ + +L +LI+++L Sbjct: 288 LGLDTYSRTD-FLLDENENIYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQISL 346 Query: 352 ERH 354 +++ Sbjct: 347 DKY 349 >UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N436_9BACT Length = 702 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 107/357 (29%), Positives = 164/357 (45%), Gaps = 57/357 (15%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +E ++ ++ GG S E E+SL+S + A+ FDV V+D + L Sbjct: 312 VEAPKINLLLGGASNEREISLKSGSAVAQALRNGGFDVT-----------VTDVTECRL- 359 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +P E DV++P++HG GEDG +Q ++ Sbjct: 360 ------------------LPEMRE--------------ADVVYPVLHGGFGEDGRIQKVM 387 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 A L FVGS AS MDK TKRLL G+ A + +TR R E+ L L Sbjct: 388 EEAGLRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTRDRR------ELPQNLKL 441 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PL +K +GS+ G+ KV E++ A++ F +++VE+ I G EI ++ N + Sbjct: 442 PLILKVPMEGSTFGIVKVERAEEWDAALEKEFAMAGELLVEEYIDGIEITVPIV---NGE 498 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDG-AKVVVPAA--IAPEINDKIRAIAVQAYQTLGCAG 297 EI FY YD KY+ +DG + PA A ++ D R AV+ Y GC Sbjct: 499 VLPAIEIKSPHGFYDYDAKYVYKDGHTEYFCPARSLSAEQVADASRQ-AVKFYLGAGCRD 557 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + RVD + + + E N++PG T S+ PK + SG+ + + L+ A+ RH Sbjct: 558 ILRVDFIVGKDGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEKMTATLVYAAMRRH 614 >UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidetes RepID=DDL_FLAPJ Length = 328 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 105/352 (29%), Positives = 172/352 (48%), Gaps = 32/352 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + V +V GG S E +SL+S + I++ +DKS++++ + I + V + Y +N D Sbjct: 1 MNVAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEVHILLKDWSVVIEGEKYPINKAD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + +NG + DV VHGT GEDG LQ + Sbjct: 61 FSF-----------------------TKNGV-ITKFDVAINTVHGTPGEDGHLQSYWELI 96 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+ G + SA +K T +L + A I L + + I E++ LGLP F Sbjct: 97 DIPYTGCNFYQSALTFNKRDTLSVLTKFNIPKAKSIYLRKGDV--IDGNEIKKALGLPFF 154 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP GSS+GVSKV + +Q A++ AF D+++++E + G E+ VL N Q Sbjct: 155 VKPNQSGSSLGVSKVDALDQLEKALEFAFAEDNEILIESYLNGTEVSVGVL-NYKGQTKV 213 Query: 244 CG--EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 G EI+ +DF+ Y+ KY+ + ++ + PA I+ E + A + Y +LG +G +R Sbjct: 214 LGITEILSQNDFFDYEAKYLGK--SEEITPARISKEEEILVAESAKKIYNSLGMSGFSRT 271 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 D + I EINT PG + S++P+ + + ++ I LAL R Sbjct: 272 DFIIMNGIPHFI-EINTNPGLSPQSIFPQQAMFAKMDMPQMLDNEITLALSR 322 >UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C4ZI29_EUBR3 Length = 369 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 179/358 (50%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+ + ++ GG S E +VS ++ + A+ ++ V+LL + D + AD Sbjct: 18 KMNIVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRAD 77 Query: 63 D-PAHIALRPS-ATSLAQVPGKHEHQ---LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 + ++ P+ A LA+V + Q + D++F +HG GE+G +Q Sbjct: 78 EISVQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQ 137 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 + + + GSD L+SA M+K+ +K+ G+ I++TRA R + +++ Sbjct: 138 AAFDLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQD-DITKLD-- 194 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L LP VKP GSS+GV+ V ++ A+D AF++++++++E+ ++GRE V+ Sbjct: 195 LTLPCVVKPCCGGSSIGVTIVRDAAEFKAALDDAFKWENELVIEEFVQGREFSVGVIEG- 253 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKV-VVPAAIAPEINDKIRAIAVQAYQTLGCA 296 +A EI FY Y KY + G+ V PA + ++ ++ A + + +G Sbjct: 254 --KALPIIEIAPKEGFYDYKNKY--KAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLD 309 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +R D L +NE+ E NTLPG T S+ P+ G+ + L LI+++L+++ Sbjct: 310 TYSRSDFLLNDKNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLIDISLKKY 367 >UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=DDL_COPPD Length = 304 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 106/351 (30%), Positives = 175/351 (49%), Gaps = 50/351 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + + ++FGG S E E+SL+S +NI + A + + D Sbjct: 1 MNIVVLFGGTSPEREISLKSGENIAATLR---------------------ARGHQVETLD 39 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 A VP E QL+ + D +FP +HG GEDG +QG+L + Sbjct: 40 TA-------------VPNFVE-QLMQLKP-------DCVFPALHGADGEDGKIQGLLSIL 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI-SFAEVESKLGLPL 182 ++P+VGSDV AS MDK +TK + +G+ FI + + H + + +VE KLG P Sbjct: 79 HIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVY--DPHLVPDYWDVERKLGSPF 136 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV--LGNDNPQ 240 VKP + GS++G+S V S +Y +A++ AF F ++++E+ I G E+ + LG D Sbjct: 137 IVKPCDVGSTIGLSLVRSASEYEVALEEAFRFSDRLLLEEFIDGFEVTVGLFRLGGDFLV 196 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 +V + YDTKY GAK V I+ E +++ + + + + +G G+AR Sbjct: 197 LPPI-YVVKPDRIFDYDTKY-KPGGAKHVYDLPISVEARERLTSYSKRICKIVGIGGVAR 254 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 +D + E ++ EIN++PG T S+ P + +G + + + LI+ AL Sbjct: 255 LDYIVKDETPYLL-EINSIPGMTAESLVPDEVRHAGRDFGEFLEDLIKDAL 304 >UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M663_9BACT Length = 321 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 108/353 (30%), Positives = 161/353 (45%), Gaps = 48/353 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ +++GG S E EVSL S + + A+ + ++ L ID G V +A Sbjct: 6 KIVVLYGGNSPEREVSLVSGQAVEKALKSAGYETEL--IDLTGPEKVFEA---------- 53 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + P D+ FP++HG+ GEDG LQ L ++ Sbjct: 54 ------------LKTP------------------CDLFFPVLHGSWGEDGRLQAALDLSG 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL--PL 182 P+VGS LAS CMDK +K L AGL+ P L R + L L Sbjct: 84 RPYVGSGPLASGLCMDKWASKALFDRAGLHT-PKGVLVRQKDGTGDLPGLLRALERYGKL 142 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH-KVIVEQGIKGREIECAVL-GNDNPQ 240 VKP GS+V S V+ E+ A++ A+E +VE+ I GRE+ A+ P+ Sbjct: 143 IVKPNCGGSTVATSVVSCSEELLPALNAAWEQKSGGALVEEFIPGRELTVAMWDSGSGPE 202 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EI+ S FY Y KY D ++ PA ++ E + AV A++ +G R Sbjct: 203 ALPAVEILPASGFYDYQAKYTD-GASRYESPARLSGEEARALSEAAVAAWRAVGLRDYGR 261 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 D L P+ E V+ EINT PG T+ S+ P +++G+ D ++RL A R Sbjct: 262 ADFRLPPDGEPVLLEINTAPGMTSHSLVPMAAKSAGMELPDFLSRLARRAWSR 314 >UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirillum sp. Group II RepID=A3ERR6_9BACT Length = 303 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 133/258 (51%), Gaps = 20/258 (7%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 DV F HG GE+G+LQG L V +P+ GS VL SA M K ++ L R GL++ + Sbjct: 48 DVCFLATHGGHGENGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETV 107 Query: 160 TLTRANR---HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH 216 + R I F LP VKP + GSS+GV++V A+ A + Sbjct: 108 AIESGERLTPDKIPFP-------LPFMVKPESAGSSIGVTRVDHFPDLPQALLEAEKHSS 160 Query: 217 KVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSD----FYAYDTKYIDEDGAKVVVPA 272 +++VE + GRE++ A+L G I + D FY Y +KY + ++ + PA Sbjct: 161 RILVEPFLPGREVQSAIL-----DGRYLGAIEIVPDSSEPFYTYASKY-QKGKSRHIFPA 214 Query: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLW 332 + ++ ++ ++A+ L G+AR+D + P+ VV+ E+NTLPG T S+ P++ Sbjct: 215 PLTSDVASRLEEATLRAFGLLELRGVARMDTLVLPDGRVVVLEMNTLPGLTETSLVPEIA 274 Query: 333 QASGLGYTDLITRLIELA 350 + GL + DL+ ++ A Sbjct: 275 RGCGLSFEDLVETILSSA 292 >UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ellin514 RepID=B9XIG4_9BACT Length = 304 Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 100/351 (28%), Positives = 165/351 (47%), Gaps = 57/351 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L++ ++ GG SAE EVSL++ + A+ V L K+ +W + Sbjct: 10 LKITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELD-PKEKKWSL------------ 56 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P+ T +V+F +HGT GEDG++Q L Sbjct: 57 -------PAGT-------------------------EVVFLALHGTYGEDGTVQRELDKL 84 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKLGLPL 182 +P+ G D AS DK +TK+ +AG+ A F+ +R+ + + P+ Sbjct: 85 GIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVWPMGWQP-------PV 137 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP QGSSVG+ V ++ + A +D +V++E+ I GRE +LGN + Sbjct: 138 VLKPVRQGSSVGLQFVDRVGDWSKKLAEALRYDTQVLMEERILGRETTVGILGN---RPL 194 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 E+ + Y Y KY + + PA + +I+ A+ A++ +G +RVD Sbjct: 195 PIVEVRPKAGNYDYQNKYT-AGATEYLCPAPFDEAVTARIQEAALGAFKAIGGRDYSRVD 253 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 V + P E V+ E+NTLPG T S+ PK A+G+GY +L ++++LAL+R Sbjct: 254 VMVRPNGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVDLALKR 304 >UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=DDL_PORG3 Length = 330 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 105/356 (29%), Positives = 171/356 (48%), Gaps = 35/356 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW--HVSDASNYL 58 M+K V ++ GG S EH VSL+SA I+ + F L+ I++ +W VS+ Sbjct: 1 MKKPIVAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERD-RWSVRVSEQREVP 59 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 L+ +D L D + D + +HGT GE+G LQG Sbjct: 60 LDKND-------------------FSFDLDDER-----IRFDYAYITIHGTPGENGLLQG 95 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT-RANRHNISFAEVESK 177 L + +P+ D L + +K V R L G+ IA + LT R + ++ A++ ++ Sbjct: 96 YLDMIGIPYNTGDTLVESLTFNKYVCNRFLSGFGIRIADSMRLTGRDTQPDV--ADLTAR 153 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC-AVLGN 236 +GLPLFVKP GSS+ +KV Q A+ AF +V++E+ I G E+ C A L Sbjct: 154 MGLPLFVKPNVGGSSIATTKVVEAAQLLPAIGQAFSEGEEVMIERLICGTEVTCGAFLRK 213 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGA-KVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A E+V ++F+ +D KY +GA + + PA I+ E I+ + + Y+ L Sbjct: 214 KEVVALPVTEVVAHNEFFDFDAKY---NGAVEEITPARISDEATRLIQTMTARIYELLNA 270 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ RVD + + + E+NT PG T S P+ +A+ + +++ +I L Sbjct: 271 RGIIRVDYIIEADGIPTLLEVNTTPGMTPTSFIPQQVRAAEMDMKEVLCTIIRDGL 326 >UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteobacteria RepID=C6XGZ9_LIBAP Length = 300 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 + ++ GG S+E EVSL S K A++ + F V + +D+ + +L A Sbjct: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 H L+P D+ F ++HG GEDG +Q +L + + Sbjct: 48 H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182 P+ S +LASA MDK +K+++ G+ + P I + R ++H IS P Sbjct: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240 +KP GSS+G+ + ++ + + + ++H ++++EQ + G E+ C V+G+ + Sbjct: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R Sbjct: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 Query: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 D P +V EIN PG T +S++P++ +G + +L+ ++E Sbjct: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 >UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas RepID=DDL_MARMS Length = 317 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/348 (26%), Positives = 167/348 (47%), Gaps = 44/348 (12%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 + +++GG+SAE EVSLQS + + + + VV L + Y NA Sbjct: 10 IAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDL-------------YGSNA---- 52 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 AL P ++ Q+ + D+ F +HG GEDG +Q +L + Sbjct: 53 --ALDP---------------IVQLQSIE----FDLAFIALHGGEGEDGRVQALLEMFGK 91 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 P+ GS LA MDK +TKR G+ +++ ++ +E ++ P+ VK Sbjct: 92 PYTGSSPLACGLAMDKVLTKRFWNGIGIPTPAYLSFVDHANADL----IEEQMSYPVIVK 147 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 P+ +GS++G++K + + A+ A E+D ++VE+ I G E V+ +D Sbjct: 148 PSREGSTIGINKAMNRAELDDALIKALEYDSDILVEEFIDGPEFTVTVI-DDVAYPPIGL 206 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 + Y Y+ KYI +D + ++P + + ++++ +A+ AY++LGC G RVDV Sbjct: 207 KPAPDHKLYDYEAKYIADD-TEYLLPCGLDEDDENELQMLALDAYRSLGCFGWGRVDVMR 265 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + E+NT PG T+ S+ P + G+ Y L+ ++ + A ++ Sbjct: 266 DQAGVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASLVEKIAQNAWDK 313 >UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VIQ4_9BACT Length = 314 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 105/354 (29%), Positives = 167/354 (47%), Gaps = 49/354 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEK+ V + GG S E EVSL S I A+ Y++ Sbjct: 1 MEKIVV--LKGGTSPEREVSLVSGAEIASALRNM---------------------GYIVQ 37 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DPA P + L L QN QPL ++F +HG GE+G LQ L Sbjct: 38 EIDPADY---PKLSDL----------LTAVQNEQPL----LVFNGLHGGSGENGELQAAL 80 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS----FAEVES 176 +A + F GS AS MDK ++K + G+ + +I + + ++ + Sbjct: 81 SLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILMREDLLEDYQDVEDYSGFSN 140 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 +LGLP+ VKP + GSSVG+S+V E AV A ++ H V++E+ I GRE+ ++ Sbjct: 141 QLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSHSVLLEEYIPGRELTVTII-- 198 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 + +A EI +Y Y KY K PA I + ++ A++ ++ G + Sbjct: 199 -DSEAYPVVEIKPLEGWYDYTNKYT-HGKTKYEAPAQIDDTVAKLLQLYALRLWKAFGLS 256 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 G AR+D F + E+NTLPG T++S+ P +A+G+ + +L+ ++I +A Sbjct: 257 GYARID-FRYDGLKPYFLEVNTLPGMTSLSLTPMAAKAAGMSFQELLQKIIYIA 309 >UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibrionales RepID=DDL_DESDG Length = 308 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 103/355 (29%), Positives = 161/355 (45%), Gaps = 56/355 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+ ++ GG S E +VSL A+ I A+++ V L D Sbjct: 1 MRILLIAGGWSEERDVSLSGARGIHAALERLGHQVTLF---------------------D 39 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P +LA L++A D F +HG GEDG +Q +L A Sbjct: 40 PCR--------TLAG--------LLEAAQAH-----DFAFLNLHGQPGEDGLVQALLETA 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS S ++K K + GL ++ L A+ E P F Sbjct: 79 GVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHPG-----ADWEPPFAFPAF 133 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +K N GSS+ + +V+ + A A+D F + I+E ++G E+ C VLG++ Sbjct: 134 IKSNNGGSSLALHRVSCPGELARALDELFTRGGEAIIEPAVEGVEVTCGVLGDE-----A 188 Query: 244 CGEIV---LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 I+ L + F+ Y +KY A+ + PA + E+ K+R A++A++ LG G +R Sbjct: 189 LPPILIRPLGAGFFDYASKYTPGQ-AEELCPAPLPGEVTAKVREYALRAHRALGLRGYSR 247 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D LTP + + E+NTLPG T S+ P+ A G+ + LI RLIEL L H Sbjct: 248 SDFILTPAGALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLIGRLIELGLAAHG 302 >UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B4D1Z2_9BACT Length = 315 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 131/260 (50%), Gaps = 17/260 (6%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 DV F ++HGT GEDG +Q +L + + G V S +DK TK+ + + A F Sbjct: 66 DVAFNVIHGTFGEDGQIQRILESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFE 125 Query: 160 TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVI 219 L L LP VK +GSSVGV V E + A + A+ + +++ Sbjct: 126 ILRDG---------ANPTLPLPYVVKAPKEGSSVGVFIVREEAKVADTMREAWSYGKELL 176 Query: 220 VEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDED-----GAKVVVPAAI 274 VE I GRE+ VLG+ QA EI DFY +D KY + A+ PA I Sbjct: 177 VEDFINGRELTVGVLGD---QALPIIEIKPAKDFYNFDNKYPFLNPKAGGAAEHTCPAMI 233 Query: 275 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA 334 + E+ +++ +A+ A + + RVDV LT E + EINT+PG T +S+ P+ A Sbjct: 234 SDELTRRVQEVALAAARAIHLETYCRVDVLLTGAGEPYVLEINTIPGMTQVSLLPEAAAA 293 Query: 335 SGLGYTDLITRLIELALERH 354 +G+ Y +L R+IEL+L R Sbjct: 294 AGISYAELCARVIELSLARR 313 >UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae RepID=DDL_AQUAE Length = 291 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 93/346 (26%), Positives = 171/346 (49%), Gaps = 58/346 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG+S+E E+SL++ K + A+ + +V L +DK+ + Sbjct: 1 MRVVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKL------------ 48 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + ++P D +F +HG GEDG++QG+L + Sbjct: 49 ---LEIKP----------------------------DKVFIALHGRYGEDGTVQGLLEIL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT-LTRANRHNISFAEVESKLGLPL 182 ++P+ GSD +ASA +DKD TKR+++ G+N + T ++ + N + + P Sbjct: 78 DIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVLNTEWNK------FPA 131 Query: 183 FVKPANQGSSVGVSKVTS-EEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 VKP +GSSVG+ V S EE A+DL + +V+VE+ ++GR++ +L +A Sbjct: 132 VVKPVREGSSVGLKIVESLEELKEYALDL-LKKTERVMVEEFVEGRDMTVGILKG---EA 187 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI+ Y Y+ KY ++ +++ K++ I+++ + L AR+ Sbjct: 188 LPVVEIIPKKGVYDYECKYTKGMSEYRILKDE---KLSKKLQEISLKISKFLSLKDFARI 244 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 D +T E ++ E+NT+PG T +S+ P + G+ + LI+ +I Sbjct: 245 DFRVTKEGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290 >UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FWP4_9CLOT Length = 293 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 90/343 (26%), Positives = 159/343 (46%), Gaps = 52/343 (15%) Query: 11 GGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALR 70 GG S+E E+SL+S + +++D+ +++ P + + Sbjct: 2 GGISSEREISLKSGAGVFESLDREKYE--------------------------PIKVVID 35 Query: 71 PSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGS 130 + ++P VD F +HG GEDG +Q +L ++P+ G Sbjct: 36 EKTDIITKIPDD----------------VDFAFLALHGKFGEDGCVQSVLETRDIPYSGC 79 Query: 131 DVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQG 190 L+SA CMDK+++K++ + +G+ A +IT+ I + +E ++G P+FVKP + G Sbjct: 80 GPLSSAMCMDKNISKKICKASGIPTADWITVKSI--EEIDYDRIE-EMGYPVFVKPNSGG 136 Query: 191 SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDNPQASTCGEIVL 249 SSV + + AV E D +V++EQ + G E +L G P S E Sbjct: 137 SSVATFMIKEKAGIEDAVRQGLEVDTEVMIEQYLPGEECTSFILDGEVFPTVSIKSE--- 193 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 +F+ ++ KY ++GA V + + +K+ + + C RVD F+ Sbjct: 194 -QEFFDFEAKYSSDNGAVEEV-VYLEESLQNKLNGYSRMCWDAFNCRAYVRVD-FIISNG 250 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + E+NTLPG T S+ P+ A G+ Y+ L+ +LI +L+ Sbjct: 251 VPYVLELNTLPGLTATSLIPRSAAARGISYSQLLDKLISCSLK 293 >UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C8F Length = 358 Score = 133 bits (335), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 101/352 (28%), Positives = 169/352 (48%), Gaps = 27/352 (7%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLL----GIDKQGQ--WHVSDASNY 57 +++ ++ GG S E EVSL S I +A+ + +V L GI ++G+ + + Y Sbjct: 18 MKIIVLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWPGI-REGEEVRYRTREEGY 76 Query: 58 LLNADDPAHIALRPSATSLAQVPGKH--EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGS 115 +++ + A L ++ H + LI + D++F +HG GEDG Sbjct: 77 HFSSE------IGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQ 130 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 +Q +L +P GS MDK+++K +R AG+ + + F Sbjct: 131 IQAVLEAYGIPHTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLAEKGKTSRPDF---- 186 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 LP VKP + GSSVGV+ V EE+++ A++ AF +V+VE+ I GRE VLG Sbjct: 187 ----LPCVVKPLDCGSSVGVTIVEREEEWSAALEAAFSHGGRVLVEKKITGREFSVGVLG 242 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + +A EI+ S FY Y KY + + PA I K++ A+ ++ L Sbjct: 243 D---RALPAIEIIPESGFYDYQNKY-QPGMTREICPAWIDGMQEVKMKETALTVHRILEL 298 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 +RVD + + + E NTLPG T +S+ P+ +A+G+ Y +L ++ Sbjct: 299 GYYSRVDFMMDEDGAIYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIV 350 >UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=DDL_GRAFK Length = 326 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 102/352 (28%), Positives = 166/352 (47%), Gaps = 29/352 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ I GG S+E+ +S+ S + +D ++ + I K G+W V AD Sbjct: 2 KKKIAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILK-GEWFVV--------AD 52 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + S ++ K ++I D +F +HGT GE+G LQ L + Sbjct: 53 DDTPYPINKSNFTV-----KINDKVIQ---------FDCVFNTIHGTPGENGLLQAYLEL 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P D SA +K +LR G+ A L + I+ E+ K+GLP Sbjct: 99 IGIPQTSCDYYQSALTFNKRDLISVLRPYGIKAATNYFLNK--DQEINTKEIVDKVGLPC 156 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP-QA 241 FVK GSS GV+KV +E++ A AF D + I+E + G E+ V+ A Sbjct: 157 FVKANRAGSSFGVTKVKTEDEIISAAKTAFTEDDEAIIESFLDGTEVSVGVITYKGKVLA 216 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI+ +F+ Y+ KY+ + ++ + PA I+ E K++ IA+ Y+ L G++R Sbjct: 217 LPVTEIIPDGEFFDYEAKYLGK--SQEITPARISEEDTKKVQDIAIMIYKKLKMKGLSRS 274 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + F+ E E E+NT PG + S+ P+ + +G+ DL IE AL + Sbjct: 275 E-FIFHEGEPHFIEMNTNPGISQASILPQQAEKAGISLKDLFGSTIEAALNQ 325 >UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrobiaceae RepID=B2UPW3_AKKM8 Length = 311 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 107/353 (30%), Positives = 160/353 (45%), Gaps = 59/353 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L++ ++ GG AE EVSL S ++ DA+ ++ F V +D G ++ L Sbjct: 8 LKIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVT-KVDVHG-------PDFRL---- 55 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P T LA + I+HGT GEDG+LQ +L Sbjct: 56 -------PEGTELA-------------------------YNIIHGTFGEDGTLQAILEER 83 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ G+ +SA C +K +K++ +AG + A + S V L LP Sbjct: 84 GVPYTGAGSRSSALCFNKSESKKVFLEAG------VPTPHAEILDCSNGIVMPSLPLPFV 137 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDNPQAS 242 +KP +GSSVGV V +E A++ A V+VE+ I+G+E+ +L G P Sbjct: 138 IKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEEFIQGKELTVGILDGKALPVIH 197 Query: 243 TCGEIVLTSDFYAYDTKYIDED---GAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 C S FY KY + G + PA + E ++ A++AY+ G Sbjct: 198 ICPR----SGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAYKAAGVEVYG 253 Query: 300 RVDVFLTPENEV-VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 RVDV L E+ + EINT+PG T S+ PK ASG Y DL ++ EL+L Sbjct: 254 RVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAELSL 306 >UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia muciniphila RepID=D2N2G7_9BACT Length = 316 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 107/353 (30%), Positives = 160/353 (45%), Gaps = 59/353 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L++ ++ GG AE EVSL S ++ DA+ ++ F V +D G ++ L Sbjct: 13 LKIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVT-KVDVHG-------PDFRL---- 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P T LA + I+HGT GEDG+LQ +L Sbjct: 61 -------PEGTELA-------------------------YNIIHGTFGEDGTLQAILEER 88 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ G+ +SA C +K +K++ +AG + A + S V L LP Sbjct: 89 GVPYTGAGSRSSALCFNKSESKKVFLEAG------VPTPHAEILDCSNGIVMPSLPLPFV 142 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDNPQAS 242 +KP +GSSVGV V +E A++ A V+VE+ I+G+E+ +L G P Sbjct: 143 IKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEEFIQGKELTVGILDGKALPVIH 202 Query: 243 TCGEIVLTSDFYAYDTKYIDED---GAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 C S FY KY + G + PA + E ++ A++AY+ G Sbjct: 203 ICPR----SGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAYKAAGVEVYG 258 Query: 300 RVDVFLTPENEV-VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 RVDV L E+ + EINT+PG T S+ PK ASG Y DL ++ EL+L Sbjct: 259 RVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAELSL 311 >UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TN08_9BACT Length = 308 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 162/349 (46%), Gaps = 47/349 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+ ++ GG S E VSL S K + + + V L+ + +A L D Sbjct: 1 MRISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLSSP------EALFSFLAGDR 54 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P ++ F +HG GEDG LQ +L +A Sbjct: 55 P-----------------------------------ELCFVALHGGWGEDGRLQAVLDMA 79 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS A MDK ++K AGL++ P+ + S + SK G L Sbjct: 80 GVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDV-PWGVAVHPGEGS-SPMKALSKWGT-LV 136 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-PQAS 242 VKP GS+V V+ E++ A+ A+E +++ +VE + GRE+ V+ + P+A Sbjct: 137 VKPCCGGSTVATYIVSEEDELRKALSSAWELENRALVEAYVAGRELTVTVVEDRGIPRAF 196 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ +FY Y KY G++ V PA + P + + + A A++ GC+ +RVD Sbjct: 197 PIVEILPDGEFYDYRAKY--GGGSRYVSPADLEPSVVEVVSRSAEIAHRVSGCSIYSRVD 254 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + L +N + EINT+PG T+ S+ PK A G + DL+ ++E ++ Sbjct: 255 IRLDGKNRPFVLEINTVPGMTSNSLVPKAAMAGGFSFPDLLDHIVEESM 303 >UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogaceae RepID=DDL_FERNB Length = 316 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/359 (27%), Positives = 161/359 (44%), Gaps = 53/359 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + +G++ GG S E E+S++S K I A+ + HV D ++ DD Sbjct: 1 MYLGVLLGGISREREISIRSGKRIAQAL--------------RNMGHVVDE----IDVDD 42 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L L D +F I+HGT GEDG +Q +L Sbjct: 43 NFIYKL------------------------SELKKYDALFNILHGTFGEDGKMQAILDSI 78 Query: 124 NLPFVGSDVLASAACMDK--------DVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 +P+ GS V S DK + +R + + I F+ ++ +E Sbjct: 79 GIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFLLISSEEFEESKIYMIE 138 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 K+GLP VKP +GSS+G S+E+ A+ F+ ++IV++ IKG+EI +V+ Sbjct: 139 EKIGLPCVVKPRKEGSSIGTHICFSKEELLDALKNEFKNYDEMIVQEYIKGKEITVSVID 198 Query: 236 -NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 N P E+ FY Y+ KY D + ++PA + E +KI ++ Y++LG Sbjct: 199 INGTPTVLPILELRPKKLFYDYEAKYTD-GMTEFIIPAELDGETTEKINHAVLKIYKSLG 257 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C +R+D + + E+NTLPG T +S P A G+ + +L+ +I+ A + Sbjct: 258 CKHFSRIDG-IVKDGVFYFLEVNTLPGMTELSDLPMSANAFGISFDELVDLIIKEACRK 315 >UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q872P6_NEUCR Length = 346 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 105/363 (28%), Positives = 174/363 (47%), Gaps = 41/363 (11%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGID---KQGQWHVSDASNYLL 59 K + IV GG S E++VS+ + I +D++R+++ + I K G +H++D Sbjct: 6 KKNIAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAGWYHLTDNDK--- 62 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 Q+P + G+ + D+ + +HG GE+G LQG Sbjct: 63 ------------------QIPVDRNDFSVTLSTGEKI-QFDLAYISIHGNPGENGVLQGY 103 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL-NIAPFITLTRANRHNISFAEVES-- 176 + LP+ SA +K ++R G+ +A L +R+ IS + E+ Sbjct: 104 FDMLGLPYTSCGFYTSALTANKGHCNPVVRSFGVVEVAKSRLL---HRNQISALDPEALL 160 Query: 177 -KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD--HKVIVEQGIKGREIECAV 233 + LP+FVKPA+ GSSV +KV S EQ AV+ A D +V+VE+ I+GRE C V Sbjct: 161 FEFDLPVFVKPASGGSSVATTKVKSIEQVVQAVEDAMREDGNGQVLVEEFIEGREFNCGV 220 Query: 234 LGNDNP--QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 + + E++ S+++ Y+ KY + V PA + +++D+I+ + Sbjct: 221 IRDAEGWLHVFPITEVIPHGDSEYFDYNAKY--NGSSSKVTPAEVETQVSDRIKDTSTML 278 Query: 290 YQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 Y L C G+ R D PE + E+NT+PG T S+ P+ +A+G+ DL +IE Sbjct: 279 YDLLDCRGVVRFDYRYNPELYALYFLEVNTIPGQTPESIVPQQARAAGISTADLYHMVIE 338 Query: 349 LAL 351 AL Sbjct: 339 CAL 341 >UniRef50_B8DLD4 D-alanine--D-alanine ligase n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLD4_DESVM Length = 408 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 120/399 (30%), Positives = 194/399 (48%), Gaps = 56/399 (14%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS----DASNYL 58 K+RV + FGG+S EH+VS+ + ++ A+D ++++ V + +D+ G W D + Y+ Sbjct: 5 KIRVAVFFGGRSPEHDVSIVTGLQVIQALDAAQYEPVPVYVDRCGVWRTGEKLLDRATYI 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQN---GQP--LPTVDVIFPIVHGTLGED 113 PA A A SL PGK L++ + G+P +P DV P HG GED Sbjct: 65 -----PARDADGLPAVSLEIAPGKG-GMLVEQTSKLFGKPRRIP-FDVAIPAFHGPYGED 117 Query: 114 GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI-SFA 172 G +QG+ +P+ G VLASA MDK TK+ L G+ + P L + + A Sbjct: 118 GDMQGLFEAVGIPYTGMRVLASAIFMDKAATKQALAGTGIPMLPCAVLRKPVGGLLPPRA 177 Query: 173 EVESKLG---LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-RE 228 ++E+ L LP +KPA+ GSS+GV+KV S E + F D IVE + G E Sbjct: 178 DIEAALAGITLPGCLKPAHLGSSIGVAKVDSIEDIEAVLPGLFRNDTVAIVEPYLDGCVE 237 Query: 229 IECAVLGNDNPQASTCGE-IVLTSDFYAYDTKYI--------------------DEDGAK 267 +V + A++ E S+ + KY+ D A Sbjct: 238 YNISVRRDGEGHATSAIERPKRDSELLDFRQKYLSSGGKTGSKTGGMGGTKSAGDSGSAG 297 Query: 268 VV-VPAAIAPEIND----KIRAIAVQAYQTLGCAGMARVD-VFLTPENEVVINEINTLPG 321 ++ + I P++ + +IR AV+ Y G G R+D ++ +EV +NE+N +PG Sbjct: 298 MLSLTREINPDLPESLEGRIRDFAVRTYAAFGGTGAPRMDFMYDATRDEVWLNEVNPIPG 357 Query: 322 FTNISMYPKLWQA--SGLGYTDLITRLIE--LALERHAA 356 + + + LW+A S + +T L++ +I+ A+ RH A Sbjct: 358 --SFAFF--LWEAAESPIRFTRLLSLMIDEARAMARHTA 392 >UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidiphilum infernorum V4 RepID=DDL_METI4 Length = 303 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 91/351 (25%), Positives = 156/351 (44%), Gaps = 58/351 (16%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 + ++ GG S E E+SL++AK + DA+ +++ + + Sbjct: 9 IAVLKGGPSEEREISLRTAKAVEDALSSLGYEISSIDV---------------------- 46 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 T ++P E + F +HG+ GEDG +Q +L + Sbjct: 47 -------TTEKFEIPRDAE----------------ICFLCIHGSFGEDGQIQRLLMRRGI 83 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 PF GSD +S DK +K L G+ PF + + I F P +K Sbjct: 84 PFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPFCVVGDGKK--IPFDP-------PYVIK 134 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 P+ QGSS+G+ V ++ A+ + ++DH V+ E I G+E+ +L + +A Sbjct: 135 PSRQGSSIGIEFVYDIKELDQAIKKSTQYDHVVLAEALITGKELTVGIL---DGKALPVV 191 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 EI FY Y KY + + PA + + ++ A+ A+ LGC+ RVD+ L Sbjct: 192 EIKPKEGFYDYHHKYT-KGASTYFCPAPLTVDQTSAVQKTALDAFNVLGCSVYGRVDIIL 250 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + + EINT+PG T S++P +ASG+ + L +++E++ R A Sbjct: 251 SDNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKILEISYLRWKA 301 >UniRef50_B3G438 D-alanyl-D-alanine ligase-like protein n=2 Tax=Adineta vaga RepID=B3G438_ADIVA Length = 349 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 94/333 (28%), Positives = 167/333 (50%), Gaps = 31/333 (9%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAID-KSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 + ++ GG S E ++ SAK+I + L+ ++K G W+ D++N + Sbjct: 10 IALLAGGYSPEGVCAVWSAKHIEKLFQGDEEYQTYLIYVNKDG-WYYEDSNN----NEQK 64 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 HI + +L Q + F ++ G GEDG +QG L+++N Sbjct: 65 IHIDRNNFSLTLP---------------NQETIKFKLAFLLIGGAPGEDGQIQGYLQISN 109 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAG---LNIAPFITLTRANRHNISF---AEVESKL 178 +PF+G ++L+SA +K + R++R ++++P I + R+ + S A + Sbjct: 110 VPFIGCNLLSSAITFNKSIANRIVRSFNSSIIHVSPSIDVFRSVSVDDSLVLHALETNHF 169 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-ND 237 LPL VKPA+ GSS+GV+K+T Q A ++AF+ ++++VEQ I GRE+ + N Sbjct: 170 RLPLIVKPADSGSSLGVTKITEISQLNEAFNVAFKESNQILVEQFIDGRELTVGLFKING 229 Query: 238 NPQASTCGEIV--LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + Q EIV S F+ +TK+ +V+ PA + EI ++ + Y+ L Sbjct: 230 DIQVLPITEIVHQRASGFFDSETKFEGSPETQVITPANLNEEIKKRVEIGVRELYEKLNL 289 Query: 296 AGMARVDVFLT-PENEVVINEINTLPGFTNISM 327 +G+ R+D+ L P+ ++ E+NT P T S+ Sbjct: 290 SGLVRIDLMLRLPDEKIFFLEVNTAPSQTEYSI 322 >UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomycetales RepID=D1BRV4_XYLCX Length = 349 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 104/357 (29%), Positives = 173/357 (48%), Gaps = 50/357 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 LRV ++ GG S E +VSL+S + + +A+ DV + +D Q LL D Sbjct: 37 LRVVVLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQ-----------LLRYLD 85 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 EH+ DV++P++HG GEDGSL+ +L +A Sbjct: 86 --------------------EHR------------PDVVWPLLHGAGGEDGSLRDVLELA 113 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS----FAEVESKLG 179 +P+VG+ AS DK + K L+ AGL ++TL + ++ + V + G Sbjct: 114 GVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQELFRDLGAQGVLSIVAERFG 173 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDN 238 LP+ VKP GS++GV++VTS++ A A+ F + ++E+ + G EI +V+ G D Sbjct: 174 LPVVVKPTRGGSALGVTRVTSKDGLARAMVDCFAYGDSALIERAVDGVEIAVSVIDGMDG 233 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P A EI++ Y +D +Y + + PA ++P+ + +AV A+Q L + Sbjct: 234 PVALPAVEIIVDGP-YDFDARY-NPGRVEYFAPARLSPDQAAHVAGVAVAAHQALDLRHL 291 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +R D+ L + + E+N PG T S+ P+ A+G L +++E A R A Sbjct: 292 SRTDLILQTDGTAQVLEVNVAPGMTETSLLPQAAVAAGHDLGTLYRQVVEHAALRTA 348 >UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B1ZUU9_OPITP Length = 311 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 110/357 (30%), Positives = 168/357 (47%), Gaps = 53/357 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ + + GG S+E EVSL S + A++KS F V ID +DA L+ Sbjct: 1 MDSPVIAVFSGGTSSEREVSLGSGQACAAALEKS-FRVERFQID-------ADALPAGLD 52 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 P +H V+F +HGT GEDG +Q +L Sbjct: 53 -------------------PQRH-----------------VVFSTLHGTFGEDGGMQRLL 76 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 A + + G D ++SA MDK +TK G+ + P +T A + +V + G Sbjct: 77 DAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKKPRPE--QVIEQFGE 134 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 + VKP +GSSVG++ V S E+ +D+ + + I+E+ I GRE+ VL N + Sbjct: 135 RVVVKPNAEGSSVGLNLVGSREELTRVLDVIQ--NGRWIIERRIFGRELAVGVL---NGR 189 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EI S Y Y +KY + + PA + + KI+A A A+ GC AR Sbjct: 190 AMGVVEIRPKSGVYDYASKYT-KGMTNYLAPAPLDAALTQKIQAAAQTAFAACGCRDYAR 248 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER-HAA 356 VD L ++E+ + EINTLPG S+ P + G+ +T L+ ++ A++R HAA Sbjct: 249 VDFILGDDHELYLLEINTLPGMKETSLLPMSARCEGIDFTALVKAMVTPAVQRFHAA 305 >UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31F0A Length = 309 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 147/289 (50%), Gaps = 23/289 (7%) Query: 72 SATSLAQVPGKHEHQLIDA--------QNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 +A +L Q+ H +LID Q +P D +F +HG GEDG++Q +L + Sbjct: 24 AAKALRQL--GHAVELIDVGADFVDVVQRAEP----DFVFIALHGVGGEDGTVQDLLEIL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL- 182 +P+ GSD LASA C+DK K + G+ P+ + T+ + + L Sbjct: 78 QVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQAFADYGAGKTLDALWQQFD 137 Query: 183 ---FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 VKPA QGSS G+S V Q AV A +D +V++E+ + GRE+ VLG +D Sbjct: 138 GRAVVKPARQGSSFGLSVVQERAQLGGAVLGAMSYDDRVLLERYVPGRELAVTVLGRSDA 197 Query: 239 PQASTCGEIVLTS-DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+ EIV+ S ++Y++ Y E G V A + ++ +RAIA +AY GC Sbjct: 198 PEPLPVVEIVMASEEYYSFQAHY--EIGQSEVRLAGLPDAVDAHVRAIAAEAYSAAGCRD 255 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 ARVD+ L + V+ EINT+PG T P + +GL + LI R+ Sbjct: 256 FARVDIRLEGDEPWVL-EINTIPGLTETGPTPLAAEHAGLTFAQLIERI 303 >UniRef50_C1RMD8 D-alanine--D-alanine ligase n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RMD8_9CELL Length = 333 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 164/345 (47%), Gaps = 44/345 (12%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV +V GG +AEH+VSL SA + A+ S DVV L + + G W Sbjct: 19 RVAVVGGGANAEHDVSLASAAAVRAALTPSH-DVVELTVARDGSWWSGG----------- 66 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 A + AQ G L+ A DV+ P VHG GEDG+L + +A Sbjct: 67 -------DALTFAQAVG-----LVAA--------CDVLLPAVHGPRGEDGTLAALADLAG 106 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 + VGS V A A MDK VTK L A R AE + LP V Sbjct: 107 VACVGSGVRAGAVGMDKWVTK-------LVAAAVGVAVADGRLVRGVAEACADPRLPAVV 159 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNPQAS 242 KP + GSS GV +V + E A AV A E D +V+VE+ + GREI+ AVL + S Sbjct: 160 KPVSSGSSHGVRRVDTVEDLADAVAAALELDDRVLVEEVVTGREIDVAVLRRADGTTLVS 219 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI + TKY + A+ VVPA + P + + A A+ LGC G+AR D Sbjct: 220 PALEIGHAGAVFDTATKY--DGSARFVVPAPLEPADAEALAAAALSVVDALGCDGVARAD 277 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 FLT V+NE+NT+PG T S P + A+GL Y +L+ L+ Sbjct: 278 FFLTARGP-VLNEVNTMPGMTAHSQVPVMLAAAGLTYAELVAELV 321 >UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobacteria RepID=DDL_CAUSK Length = 322 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 143/283 (50%), Gaps = 21/283 (7%) Query: 80 PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACM 139 PGK Q++ A D++F +HG GEDG +QG+L L + S VLASA M Sbjct: 51 PGKDVAQVLTAL------APDLVFNGLHGRWGEDGCVQGVLETLGLAYTHSGVLASALAM 104 Query: 140 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV- 198 DK +K +L AG+ P +RH+++ V P VKP +GSSVGVS V Sbjct: 105 DKAKSKAVLAAAGI---PVPGGGLFDRHDVAQGHVMPP---PYVVKPNAEGSSVGVSLVF 158 Query: 199 ---TSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-PQASTCGEIVLTSDFY 254 + A D A F +V+VE I G E+ AV+G N P+A EI ++ FY Sbjct: 159 EGANGPPRQLAAPDWA--FGEQVMVEPYIPGLELAVAVVGESNGPRALAVTEIRSSTGFY 216 Query: 255 AYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE-VVI 313 YD KY + G+ V+PA I + D+ +A + LGC G+ R D N+ +V+ Sbjct: 217 DYDAKY-SQGGSIHVLPAPIPDAVRDRALHLAKLGHTALGCQGVTRSDFRYDDINDLLVL 275 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 E+NT PG T S+ P+ +G+ + L+ ++E A R A Sbjct: 276 LEVNTQPGMTPTSLVPEQADHAGVSFDRLVFWIVEDAYARRFA 318 >UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified Gammaproteobacteria RepID=A4A5G2_9GAMM Length = 315 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/334 (28%), Positives = 156/334 (46%), Gaps = 53/334 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 LR+ ++FGG S E +VSL SA ++ + ++ + L + W Sbjct: 10 LRIAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALDTGEPRWW-------------- 55 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + L D+ F I HG GEDG QG+L Sbjct: 56 ------------------------------ERLEDADIAFNIQHGVGGEDGVTQGLLASM 85 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + GSDVL SA MDK +K+L R GL A F + + H + A + S+ G F Sbjct: 86 GVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANFAMV---DAHTDA-AALLSEWG-AAF 140 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP+ +GSS+G+S+V S + + A + A + ++ E+ I G E A+LG+ +A Sbjct: 141 IKPSAEGSSLGMSRVDSVDGFKAACEAAAVYGEGILAEEFIDGPEYTVAILGD---RALP 197 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 I + +FY Y+ KY + + +P ++ + + +A++A+ LGC+ RVD+ Sbjct: 198 PIRIEASREFYDYEAKY-KGNSTRYHIPCGLSDGEEETLCRLALEAFAALGCSIWGRVDL 256 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 E + E+NT+PG T+ S+ P +A+G+ Sbjct: 257 MRNRRGEFQLLEVNTVPGMTDHSLVPMAAKAAGM 290 >UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=2 Tax=Streptococcus pneumoniae RepID=C1C760_STRP7 Length = 321 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 165/348 (47%), Gaps = 36/348 (10%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ +++GG S E EVS SAK I ++ +DV+ + + + + + + Sbjct: 6 KIVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGE----------- 54 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + S L + + +ID VD++F HG +GE+G LQ + V Sbjct: 55 ----IEKSERGLNKQKVEIGSGIIDV-----CRKVDIVFLATHGGIGENGKLQAIFDVEK 105 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 + + G+ L++A MDK ++K + G+ A + + R ++ P+ + Sbjct: 106 IDYTGNSFLSTAISMDKKLSKIVASSVGIKCASNLMVDRIQAND-----------FPIVI 154 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP GSS G+ + +++Q+ I E VE+ IKGRE +LG Sbjct: 155 KPIRSGSSKGIKILQNKKQFDIYYKEHPELGS-FFVEKYIKGREFSVGILGE---TVLPV 210 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EI + + FY Y+ KY A+ VVPA I+ ++ ++ A + ++ LG +R D Sbjct: 211 IEIKVKNGFYDYNNKYT-VGAAEEVVPAKISEKLTHTLQKSAYKIHKALGFNVYSRTDFI 269 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + + +V E N+LPG T S+ P+ +A+G+ + +L R+IEL+ E Sbjct: 270 VDEKGDVYFIESNSLPGMTKTSLLPQEAKAAGIDFPNLCERIIELSRE 317 >UniRef50_B9KHS3 D-alanine--D-alanine ligase n=5 Tax=Anaplasma marginale RepID=DDL_ANAMF Length = 334 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/351 (28%), Positives = 166/351 (47%), Gaps = 56/351 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L V ++ GG S E EVSL K + DA+ + ++ +L ++++ + Sbjct: 12 LSVAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQL------------ 59 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 LA P D+++ +HG GEDG + G+L + Sbjct: 60 ------------LAMAP-------------------DLVYNALHGVQGEDGCVSGLLDIL 88 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 L S V AS+ MDK +TK +L+ G++ F LT+ +S EV L P Sbjct: 89 GLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEEL--LSAKEV---LPYPFV 143 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV-LGNDNPQAS 242 +KP GS++GV + S+ +Y A + ++IVE+ + G+E++ AV LG +A Sbjct: 144 IKPVRGGSTIGVHAIFSKSEYLDLSAHADTLEDRMIVEEYVSGQEVQTAVFLG----RAI 199 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 E++ Y+YD KY+ E + + PA + +I + A++ +Q LGC ++RVD Sbjct: 200 GTMELLFEGRIYSYDAKYV-EGLCEHIFPANLPYDIYNLTLEWALKLHQCLGCKTLSRVD 258 Query: 303 VFLTPENEVV-INEINTLPGFTNISMYPK-LWQASGLGYTDLITRLIELAL 351 N+ + + EINT PG T S P+ LW GL + ++ +++ AL Sbjct: 259 FRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDAL 309 >UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus Pelagibacter RepID=DDL_PELUB Length = 304 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 132/252 (52%), Gaps = 12/252 (4%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 DVIF +HG GEDG +Q +L +P+ S V+AS+ MDK+++K++ + +I Sbjct: 56 DVIFNALHGQFGEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYI 115 Query: 160 TLT-RANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV 218 + N+ NI +E L P+ VKP N+GSSV V ++ + + +++ Sbjct: 116 KFNHKKNKLNI-IKLIEKNLKFPVVVKPINEGSSVHV--YICDKTNILKNLKVLKSYNEI 172 Query: 219 IVEQGIKGREIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAP 276 ++E+ I GREI+ A++ N + G I L FY Y+ KY K ++P ++ Sbjct: 173 LIEEFIPGREIQVAIMNN-----KSLGAIELEPRRKFYDYEAKYNSSAKTKHLIPVDLSK 227 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASG 336 KI IA A++ +GC G+ R D F + + EINT PG T +S+ P++ + G Sbjct: 228 NNLAKITGIARAAHKIIGCKGVTRSD-FKFFNGKFYLLEINTQPGMTKLSLVPEIAKHKG 286 Query: 337 LGYTDLITRLIE 348 + + LI +++ Sbjct: 287 ISFIKLIEWILK 298 >UniRef50_A8Z6L3 D-alanine--D-alanine ligase n=45 Tax=Epsilonproteobacteria RepID=DDL_CAMC1 Length = 346 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 102/328 (31%), Positives = 155/328 (47%), Gaps = 38/328 (11%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQG-QWHVSDASN--YLLN 60 + +G++FG KS EHE+S+ SA +VL + KQG ++ DA+ YL+ Sbjct: 1 MNLGVIFGAKSFEHEISIVSA-------------IVLKNVLKQGLKFIFCDANRDFYLIE 47 Query: 61 ADD------PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDG 114 D + SLA+ G + H L A + DVI ++HG GEDG Sbjct: 48 QKDMRANFFSSGKYKNSKKLSLAK-GGFYTHSLFGANKVE----CDVIINLIHGMDGEDG 102 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 + + + ++G + ASA +K++TK L + AG+ + LTR + Sbjct: 103 KIAALFEFYGVKYIGPRLEASALSYNKELTKFLAQKAGVKALDYEMLTR---------QS 153 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAV 233 E K P+ +KPA GSS+GVS V + + A A D+AFEFD V+VE IKG +E A Sbjct: 154 EPKFHYPIILKPARLGSSIGVSVVHDDSELAYAKDVAFEFDKDVLVEPFIKGVKEYNLAG 213 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 D + E +F Y+ KY+ V A I+ E+ K++ + Y Sbjct: 214 CRIDGKIKFSIVEEPKKKEFLDYEQKYLSFSNENKVKEAEISEELKQKLKFNFSKIYDCG 273 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPG 321 + R D F+ ++EV +NEIN PG Sbjct: 274 FDGAIIRCDFFVI-DDEVYLNEINPNPG 300 >UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacillaceae RepID=DDL_LACC3 Length = 357 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 99/367 (26%), Positives = 172/367 (46%), Gaps = 36/367 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQW--HVSDASNY 57 +++ ++ GG+S E VS+ S I +A+ ++ F + LG D +G+ V D +N Sbjct: 1 MKIVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANT 60 Query: 58 L--LNADDPAHI-----ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTL 110 LN D LRP ++ Q+ G + + A D++F +HG Sbjct: 61 SKDLNISDAILTDEDINKLRPDGST--QLFGPNVMAICKA--------ADIVFLALHGGD 110 Query: 111 GEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHN 168 GE+G +Q + + + + GS LAS M+K +K ++ G+ + F R + Sbjct: 111 GENGKVQAVFDINGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGFKEFKRDQGPKQT 170 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGRE 228 + F P+ VKP + GSSVG + ++E+ ++ F FD+ IVE+ GRE Sbjct: 171 VPFD-------FPVVVKPTSGGSSVGTHIIHNQEELESGLEDVFRFDNSAIVEEFTPGRE 223 Query: 229 IECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQ 288 V+ N A + EI + S +Y + K+ + P + +++ ++ +AVQ Sbjct: 224 FSLGVV---NGHAYSAIEIKVRSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQ 280 Query: 289 AYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 LG R+D F E V + E N LPG T +S+ P+ +A G+ Y DL+ ++ Sbjct: 281 TMDVLGLQNYGRID-FFANEKGVWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIVN 339 Query: 349 LALERHA 355 L+ +A Sbjct: 340 GKLKLYA 346 >UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteobacteria RepID=DDL_ROSDO Length = 319 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 109/348 (31%), Positives = 159/348 (45%), Gaps = 61/348 (17%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S E EVSL S + A+ +DVV + DA + L Sbjct: 23 KVAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEI-----------DAGHDL------ 65 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +LIDA D + +HG GEDG +QG+L Sbjct: 66 -------------------GARLIDAGP-------DAVLNCLHGRWGEDGCVQGLLEWMG 99 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ S VLASA MDK +K AGL + P + A ++ V + P V Sbjct: 100 VPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVI---AKAADVRMGHV---MQPPYVV 153 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP N+GSSVGV V E L+ + +V+VE GRE+ V+G+ +A T Sbjct: 154 KPNNEGSSVGVYLV--HEAANGPPQLSEDMPQEVMVEAFAPGRELTTTVVGD---RALTV 208 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 +IV T +Y YD KY G+ VVPA I +I D A++A+ LGC G++R D F Sbjct: 209 TDIV-TDGWYDYDAKY-KPGGSHHVVPADIPADIFDLCMDYALRAHHALGCRGVSRTD-F 265 Query: 305 LTPENE----VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 E + +++ E NT PG T S+ P+ +G+ + L ++E Sbjct: 266 RWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVE 313 >UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GNT9_STRCL Length = 312 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 142/280 (50%), Gaps = 12/280 (4%) Query: 83 HEHQLID---AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACM 139 HE +++D + LP + F HG EDG LQG+L V LP+ GS VLAS+ M Sbjct: 35 HETEVVDISVPDFWKRLPDFEAAFIAGHGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGM 94 Query: 140 DKDVTKRLLRDAGLNIAPFITLTR-ANRHNISFAEVESKLGLPLFVKPANQGSS--VGVS 196 K K L+ G+ P+ ++R A IS V + +GLPLF KPA+ G S G+ Sbjct: 95 HKPTFKSLMVAHGIETLPWEPVSRGATAAQIS--RVTAGIGLPLFAKPASNGESFEAGIV 152 Query: 197 KVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP-QASTCGEIVLTSDFYA 255 + + + +A + + D + I E + G VL D +A E V +FY Sbjct: 153 RSDKDLRELLAEEGEYSSD-EFIAEPFLTGNTFTVGVLDIDGKIEALPVLEAVSLREFYD 211 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 + K D + PA I + D+++ +AV+ + GC G+ARVD F+ E+ V+ E Sbjct: 212 SEAKQ-DPSLHEYRCPAPIPDSLRDRMQELAVRVFTVCGCRGVARVD-FMLSEDRPVVLE 269 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +NT+PG T + +ASGLGY ++ +++ A +R A Sbjct: 270 VNTVPGLTLQGNLAAMAKASGLGYRRVVEIMLQSAFDRPA 309 >UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_RUTMC Length = 293 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 18/252 (7%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 D F ++HG GEDG +Q L + + GSD AS +DK TK + + L +AP I Sbjct: 53 DQAFIVLHGRGGEDGYIQKQLENRCIRYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSI 112 Query: 160 TLTRANRHN----ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD 215 A+ H I F LP VKP +GSS+G+SKV S+ Q A+ LA++++ Sbjct: 113 V---ASIHKPIEPIDFP-------LPWMVKPTLEGSSIGISKVDSQIQLNNALMLAWQYN 162 Query: 216 HKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIA 275 ++EQ I+G E A+LG+ +A +I+ FY Y++KY + + + P ++ Sbjct: 163 SHALIEQWIEGDEYTVAILGD---KALPVVKIITDQGFYDYESKY-HSNKIQYLCPCGLS 218 Query: 276 PEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQAS 335 ++ IA++A+ + G RVD + N+ + EINT+PG T+ S+ P +A Sbjct: 219 SSQEQVLQVIALKAFFAINAKGWGRVDFIINQHNKPYLLEINTVPGMTSHSLVPMAAKAM 278 Query: 336 GLGYTDLITRLI 347 G+ + L+ +I Sbjct: 279 GMSFNKLVVAII 290 >UniRef50_Q30R95 D-alanine--D-alanine ligase n=5 Tax=Campylobacterales RepID=DDL_SULDN Length = 345 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 97/326 (29%), Positives = 158/326 (48%), Gaps = 32/326 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ I+FGG S EHE+S+ SA + + + S F++ + D+ D + YL+NA Sbjct: 1 MKLTILFGGASFEHEISIVSAITLKEKL--SNFELNFIFCDQ-------DHTFYLINAS- 50 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNG----QPLPTVDV---IFPIVHGTLGEDGSL 116 + AT+ ++ K +L + +VD+ + ++HG GEDG++ Sbjct: 51 ------KMRATTFSRGEYKKMPKLTLSHGSFVQKSLFGSVDISGTVLNLIHGGDGEDGTI 104 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 +L ++ ++G V AS DK TK L G+ L+ + NI Sbjct: 105 AAILDFFSIKYIGPRVDASVFSYDKRYTKWLCHARGVKCVESQELSSSEHSNI------- 157 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLG 235 K+ P+ VKP+ GSS+GVS V E + A+D AFEFD+ VIVE ++G +E A Sbjct: 158 KIAYPIIVKPSRLGSSIGVSIVKDESKLDYALDSAFEFDNTVIVEPFLEGVKEYNLAGFS 217 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + E +F ++ KY+D + V A I+ E+ K+RA + Y+ L Sbjct: 218 AGKKFYFSIIEEPQKEEFLDFEKKYMDFSRSGNVDSAEISKELESKLRASFEKVYKNLFE 277 Query: 296 AGMARVDVFLTPENEVVINEINTLPG 321 + R D F+ EV +NEIN +PG Sbjct: 278 GALIRCDFFVV-NGEVFLNEINPIPG 302 >UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Streptomyces roseosporus NRRL 15998 RepID=UPI0001AECDB6 Length = 320 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 98/352 (27%), Positives = 167/352 (47%), Gaps = 51/352 (14%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 VG+++GG S E SL S K DA+ F+ +L+ D A Sbjct: 11 VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLI---------------------DTA 49 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 E Q I++ + +DV +HG GEDG +QG+L + + Sbjct: 50 ------------------EPQAIES-----IQKIDVALIALHGPGGEDGKIQGLLEILGV 86 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 P+ GS VLASA M K K+L+ GL+ +ITL + + VES +G P+F+K Sbjct: 87 PYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITLDPSLTSDEMSKVVESHVGWPVFIK 146 Query: 186 PANQGSSVGVSKVTSEEQYA-IAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDNPQAST 243 P+ G S+G S +A + DL + + +VE+ + GR V+ + P+A Sbjct: 147 PSAGGGSLGAGIGRSPSDFAHMLADLNRQDYLEYLVEEYVPGRPCSVGVIETSGRPEALP 206 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVV--VPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 ++ +FY Y K+ D +K + P+ + ++ ++++ AV+ + G G++RV Sbjct: 207 VHDVETDREFYDYAAKH---DPSKRIENCPSILPKDVTERLQEEAVRIHMLTGAHGVSRV 263 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 D + VI EINT+PG +++ + +A+G+ Y L+T +++ A R Sbjct: 264 DFIVDDNGRSVILEINTVPGLSDMGNLATMAKAAGMSYPALVTAVLKTAFNR 315 >UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma centrale str. Israel RepID=D1ASV0_ANACI Length = 336 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 101/354 (28%), Positives = 163/354 (46%), Gaps = 62/354 (17%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L + ++ GG S E EVSL K I DA+ + ++ ++++ + Sbjct: 13 LSIAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQL------------ 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 LA P D+++ +HG GEDG G+L + Sbjct: 61 ------------LAMAP-------------------DLVYNALHGGQGEDGCASGLLDIL 89 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 L + S V AS+ MDK +TK +L+ G++ F LT+ +S EV + P Sbjct: 90 GLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTK--EEVLSAKEV---MPYPFV 144 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH---KVIVEQGIKGREIECAV-LGNDNP 239 +KP GS++GV + S +Y +DL+ D +++VE+ I G+E+ AV LG Sbjct: 145 IKPICGGSTIGVHAIFSRSEY---LDLSVHADALEGRMLVEEYIPGQEVHTAVFLG---- 197 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +A E + Y YD KY+ E + V PA ++ ++ AV+ YQ LGC ++ Sbjct: 198 RAIGTMEFLFEGRVYGYDAKYV-EGLCRHVFPANLSDDVYSLTMEWAVKLYQCLGCRTVS 256 Query: 300 RVDVFLTPENEVV-INEINTLPGFTNISMYPK-LWQASGLGYTDLITRLIELAL 351 RVD N+ + + EINT PG T S P+ LW GL + ++ +++ AL Sbjct: 257 RVDFRYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIVKDAL 310 >UniRef50_D0RN14 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=2 Tax=Bacteria RepID=D0RN14_9RICK Length = 305 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 132/256 (51%), Gaps = 17/256 (6%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 D++F +HG GEDG +Q +L +P+ S V AS MDK +K++ + F Sbjct: 58 DIVFNCLHGKYGEDGKIQKILEKLKIPYTHSGVKASEVAMDKIKSKKIFFKKKIITPNFK 117 Query: 160 TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVI 219 + + + ++ + +KP N+GSS+GV +Y + + Sbjct: 118 IIKKISDIKNKISKSK------FILKPINEGSSLGVQIFP---EYPTSKNFKKIKKLIKK 168 Query: 220 V-----EQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAI 274 E I+GREI+ AVLGN +A EI+ +FY Y KY K ++P I Sbjct: 169 YKILIQEPYIEGREIQTAVLGN---KAIGSVEIIPKRNFYDYKAKYSLSAKTKHIIPPKI 225 Query: 275 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA 334 +++KI+ IA+ A+++L C G+ R D + P N++ I EINT PG TN+S+ P++ Q Sbjct: 226 PKRLDNKIKRIALIAHKSLKCRGVTRSDFRVMPNNKIYILEINTQPGMTNLSLVPEIAQN 285 Query: 335 SGLGYTDLITRLIELA 350 GL +T+L+ +I+ A Sbjct: 286 FGLSFTELVDWMIKDA 301 >UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomycetales RepID=A0LWW5_ACIC1 Length = 333 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/352 (28%), Positives = 160/352 (45%), Gaps = 50/352 (14%) Query: 8 IVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHI 67 ++ GG S E EVSL SA+ +++A+ + LG+D + + L AD P Sbjct: 9 VLAGGVSFEREVSLASARRVIEALRR-------LGVDVDLVDVDASVLDRL-TADPP--- 57 Query: 68 ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPF 127 D +F +HG+ GEDG+L+ +L +A +P+ Sbjct: 58 --------------------------------DAVFIAMHGSEGEDGALRELLDLAGVPY 85 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS----FAEVESKLGLPLF 183 VG+ + DK V K +L+ AG+ I ++ ++ +LGLPL Sbjct: 86 VGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFSQTAIRDLGGHQLLDRCVRRLGLPLV 145 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN--PQA 241 VKPA GS++GV+ V +A A+ F +D +VEQ + G E+ +V+ +D+ P+A Sbjct: 146 VKPARGGSALGVTIVREATAFAHALVTCFAYDTVALVEQYVVGTELAISVVEDDDGTPRA 205 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI + Y +Y + VPA I D+ +A++A+Q LG ++R Sbjct: 206 LPPVEIRPVDGMFDYAARYT-AGMTEYHVPARITETARDRAVDVALRAHQALGLRDLSRT 264 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 DV +T ++EV+ E N PG T S+ P G+ L L+ A R Sbjct: 265 DVIVTADDEVLYLETNVAPGMTPTSLLPMAAAEVGIDLGTLCRDLLVRAATR 316 >UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root RepID=B0NI26_EUBSP Length = 356 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 136/263 (51%), Gaps = 13/263 (4%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 D+ F +HG++GE+G LQ + + + G + A MDK V K++ + +G+ Sbjct: 102 DITFMGLHGSVGENGKLQATFDILGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGT 161 Query: 160 TLTRANRHNISFAEVESKLG--LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH- 216 +L R N +E KLG LPL +KP + GSS+GV V +EE+Y A+ +F+ +H Sbjct: 162 SLNR----NTKDTPLE-KLGYYLPLVIKPCSGGSSIGVYIVHTEEEYREAIRCSFDVNHE 216 Query: 217 -KVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIA 275 +V++E IKGRE C+++ +A EI+ + Y+ KY D ++ P ++ Sbjct: 217 DEVVIEPYIKGREYACSIIAG---KALPLIEIIPKDGIFNYENKYQDGGAQELCPPVSLD 273 Query: 276 PEINDKIRAIAVQAYQTLGCAGMARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQA 334 + KI+ +A++ L AR D + + + E+N LPG T S+ PK +A Sbjct: 274 DKTQAKIQRAGEKAFRVLHMDVYARADFIVDETDGKFYCLEMNGLPGMTPASLIPKSARA 333 Query: 335 SGLGYTDLITRLIELALERHAAD 357 G+ Y DL +IE +++ D Sbjct: 334 IGVDYGDLCELIIEESMKTRYQD 356 >UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LL63_9FIRM Length = 311 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 126/248 (50%), Gaps = 4/248 (1%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 +V+F +HG GEDG++Q +L ++ +P+ GS V +SA MDK ++ R+ +DAG+ +A Sbjct: 60 EVVFIALHGKYGEDGTIQSILELSKIPYTGSGVSSSAITMDKIISSRVFKDAGVRMAFSK 119 Query: 160 TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVI 219 N + +E P+ +KPA +GS++G+ V +E+ A+ F + +++ Sbjct: 120 PYYLKNGIDTVAESIEKNFKFPVVLKPACEGSTIGLEIVYEKEKLKEALKRVFAIESRIL 179 Query: 220 VEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E + G+E AVL N +A +I S Y + +KY +VPA + Sbjct: 180 AEAYLDGKEFTIAVL---NGKALPIIQICPHSGQYDFHSKYTS-GATDYIVPAPLPGAAA 235 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGY 339 D++ +A+ Y+ C+G+ R D + E N++PG T S+ PK A G+ + Sbjct: 236 DEMTRMAILGYEAAECSGVVRFDFRTDKRGTPFLLEANSIPGMTETSLVPKAAAAIGMDF 295 Query: 340 TDLITRLI 347 L ++ Sbjct: 296 PSLCENIL 303 >UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteriales RepID=A4CP91_9FLAO Length = 329 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 162/355 (45%), Gaps = 35/355 (9%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG S+E+E+SL+S + + +D+ ++D + I + + D+ Sbjct: 6 KIAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGR-------- 57 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + P ++ ++G D +F +HGT GE+G +Q + Sbjct: 58 -------------EYPVSRHDFSVELEDGTL--RFDCVFNAIHGTPGENGLMQAYFELIG 102 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P +A +K +L+ AG+ A L R N + +GLP FV Sbjct: 103 MPQTSCGFYQAAVTFNKRDLLGILKSAGVPAARSYHLDRGQELNQQ--AILDAVGLPCFV 160 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST- 243 K GSS GVS V AV+ A + D ++++E ++G E+ V+ Q +T Sbjct: 161 KANRAGSSFGVSLVREASGLQAAVENALKEDDEILIEAALQGTEVSVGVI---RYQGATR 217 Query: 244 ---CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EIV +DF+ Y KY E ++ + PA I + +K+R +A + Y L G +R Sbjct: 218 VLPITEIVSENDFFDYQAKY--EGKSREITPARIPEDTAEKVRELAARIYDRLRMTGYSR 275 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + F+ + E + E+NT PG T S+ P+ +G+ T+L I AL+++ Sbjct: 276 SE-FILVDGEPHLLEVNTTPGLTEASILPQQAACAGISLTELFGSAIADALDKNG 329 >UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella RepID=DDL_FRAP2 Length = 297 Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 99/353 (28%), Positives = 162/353 (45%), Gaps = 61/353 (17%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K ++ +++GG S E EVSL+S K ++D++ +D V G+D + D LL Sbjct: 1 MQKEKIVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAV--GLDASSK----DLVVKLLE 54 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 L P D F +HG GE+G + +L Sbjct: 55 --------LNP----------------------------DKCFIALHGEDGENGRVAALL 78 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLN--IAPFITLTRANRHNISFAEVESKL 178 + + GS + + MDK ++K +L + +A F+T ISF Sbjct: 79 ELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLTDRLVEADEISF------- 131 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+ VKP++ GSS+ KV S E+ A A + +V++EQ + G+EI A++ ND Sbjct: 132 --PVAVKPSSGGSSIATFKVKSLEELENAYQQASKHG-EVMIEQWVTGKEITVAIVNND- 187 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVV-VPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + I ++FY Y++KY G + P+ + + ++R +A +AY LGC G Sbjct: 188 --VYSSVWIEPLNEFYDYESKY---SGKSIYHAPSGLCEQKELEVRQLAKKAYDLLGCKG 242 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ARVD + + I EIN+ PG T S+ PK A G+ + + ++E A Sbjct: 243 HARVDFIYDDKGDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQA 295 >UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia RepID=DDL_WOLTR Length = 339 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/370 (27%), Positives = 173/370 (46%), Gaps = 74/370 (20%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L + I+ GG S E ++SL S K + A+D ++ + + ++ Sbjct: 17 LTITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSN----------------- 59 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 +A L ++ P D+ F +HG GEDG +QG+L + Sbjct: 60 --------TAEKLKKI--------------NP----DLAFIALHGPYGEDGCIQGLLEIL 93 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFAEVESKLGLP 181 + + S V+ASA M+K ++K + R G++ ++R + ++NI K+ P Sbjct: 94 GIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRGDILKNNI-------KIDYP 146 Query: 182 LFVKPANQGSSVGVSKVTSEEQY--------AIAV-DLAFEFDHKV-------IVEQGIK 225 +KP N+GSS+GV S E Y I V D E + V I+E+ I Sbjct: 147 YVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGIEEEEPVWITRDLMIIEEYIP 206 Query: 226 GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 G E+ AVL + +A+ EI + FY Y KY + A+ + PA I I + Sbjct: 207 GIELHTAVLLD---EAAGTMEIRPKNKFYDYKAKYTN-GFAEHIFPAEIPDNIYEMTLEH 262 Query: 286 AVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQAS-GLGYTDLI 343 A++ ++ LGC ++R D P +N + + EINT PGFT +S+ P++ + + G+ + +L+ Sbjct: 263 ALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLVPEIAKLTKGIDFNELV 322 Query: 344 TRLIELALER 353 +IE +L+ Sbjct: 323 KIIIEDSLQH 332 >UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD72_PLALI Length = 338 Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 119/253 (47%), Gaps = 5/253 (1%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 D +F +HG GEDG +Q +L + +P+ GS AS DK + K+ + + Sbjct: 69 DAVFIALHGRFGEDGGVQTLLEESGIPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWC 128 Query: 160 TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVI 219 L+ + S +LG P+ +KPA+QGSS+GVS V EQ A + A +D +I Sbjct: 129 ELSPHESFD-SLLMKAKELGWPVVIKPASQGSSLGVSIVRQPEQLQSAYERARHYDEALI 187 Query: 220 VEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 +E I G E L +D C I +F+ + KY D D + + + Sbjct: 188 MEAAIVGSEWTVG-LHDDEILPPIC--IETDREFFDWVAKYED-DHTRYIFDKPLPATCR 243 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGY 339 K+ A LG G++RVD+ L E + EINT+PG T+ S+ PK Q +G Sbjct: 244 QKLETACRGAVHALGVTGISRVDLMLDSEGNPWVLEINTIPGLTDHSLVPKAAQQAGWSL 303 Query: 340 TDLITRLIELALE 352 +L I A++ Sbjct: 304 GELCEESIHRAIQ 316 >UniRef50_Q17XZ1 D-alanine--D-alanine ligase n=19 Tax=Campylobacterales RepID=DDL_HELAH Length = 350 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 156/319 (48%), Gaps = 20/319 (6%) Query: 8 IVFGGKSAEHEVSLQSAKNIVDAI-DKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAH 66 ++FGG S EHE+S+ SA + + + D+ ++ + L D+ +++ +ASN +++ A Sbjct: 6 VLFGGASFEHEISIVSAIALKEVLKDQIKYFIFL---DENHHFYLIEASN--MHSKYFAQ 60 Query: 67 IALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 I L + H L ++ G + ++ +VHG GEDG L +L + Sbjct: 61 I----KEKKLPPLMLTHNGLLKNSFLGAKTIELPLMINLVHGGDGEDGKLASLLEFYRIA 116 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKP 186 F+GS V AS +K +TK ++ G+ I L NR N + ++ P VKP Sbjct: 117 FIGSRVEASVLSYNKHLTKLYAKNLGVKTLDCILLNEKNRAN-ALDLIKPSFNFPFIVKP 175 Query: 187 ANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGE 246 N GSS+GVS V E++ A A+D AFE+ +V++E I + ++ L + C Sbjct: 176 NNAGSSLGVSVVKEEKELAYALDGAFEYSKEVLIEPFI--QRVKEYNLAGCKIKEDFCFS 233 Query: 247 IVL---TSDFYAYDTKYIDEDGAKVVVPAAIAPE-INDKIRAIAVQAYQTLGCAGMARVD 302 V +F + KY+D K P A P + +++R + Y L + R D Sbjct: 234 YVEEPNKQEFLDFKQKYLDFSRTK--APKANIPNALEEQLRENFKKLYNDLFDGAIIRCD 291 Query: 303 VFLTPENEVVINEINTLPG 321 F+ +NEV +NEIN +PG Sbjct: 292 FFVI-DNEVYLNEINPIPG 309 >UniRef50_UPI0001C31F0B D-alanine--D-alanine ligase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31F0B Length = 439 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 116/235 (49%), Gaps = 5/235 (2%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 VG+VFGG S EH+VS+ +A+ + A+ R VV L I K G+W + + Sbjct: 9 VGVVFGGPSVEHDVSIITAQQAM-AVLSERHTVVPLYIGKDGRWWTGEELRDVSAFTQAP 67 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 R L G G + V+ +HGT GEDG+L G L ++ + Sbjct: 68 PRGARAVELRLGAADGPFVEPSTSRLRGDRALAISVVLNAIHGTGGEDGALLGALELSGV 127 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES---KLGLPL 182 P G V A A MDK + K +LR+AG+++ P + R + A + S ++ LP Sbjct: 128 PHAGRGVAAFAVGMDKHLAKTVLREAGIDVLPHRRIERGEWEHDRAAVLRSVADEVPLPC 187 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 VKPA GSS+GV++ + A++LAFE D + +VE G E+ CAVLG Sbjct: 188 VVKPATLGSSIGVARCADPAEVEEALELAFELDRQAVVEPFATGATELNCAVLGR 242 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 9/88 (10%) Query: 269 VVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NEVVINEINTLPGFT 323 V+PA IAPE+ +++RA A +A++ L AG+ R D F+ P+ + +NE NT+PG Sbjct: 331 VIPADIAPELRERVRAEAAKAHRALRVAGVVRYDFFVLPDPDGGAERICVNEPNTVPG-- 388 Query: 324 NISMYPKLWQASGLGYTDLITRLIELAL 351 + + Y L++ GL + DL+ L+ + L Sbjct: 389 SFAFY--LFEPEGLAFPDLLDELLAIGL 414 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria R... 453 e-126 UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia ... 438 e-121 UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=... 437 e-121 UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria Re... 432 e-120 UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio... 426 e-118 UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobact... 424 e-117 UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia R... 423 e-117 UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular or... 421 e-116 UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia R... 418 e-115 UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria Rep... 413 e-114 UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria Rep... 412 e-113 UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizo... 411 e-113 UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepI... 408 e-112 UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillu... 405 e-111 UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi ... 404 e-111 UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermoth... 403 e-111 UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum... 403 e-111 UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteob... 401 e-110 UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonel... 400 e-110 UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerot... 397 e-109 UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizob... 396 e-109 UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales ... 394 e-108 UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerof... 394 e-108 UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli Re... 394 e-108 UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycet... 394 e-108 UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacill... 393 e-108 UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bron... 392 e-107 UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces ... 391 e-107 UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcale... 391 e-107 UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema Re... 391 e-107 UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=... 391 e-107 UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus S... 389 e-107 UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria Rep... 389 e-107 UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycet... 388 e-106 UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine syn... 387 e-106 UniRef50_A9N8L3 D-alanine--D-alanine ligase n=6 Tax=Coxiella bur... 387 e-106 UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacter... 386 e-106 UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecali... 386 e-106 UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora ... 386 e-106 UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 385 e-105 UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachl... 384 e-105 UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci R... 384 e-105 UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN 383 e-105 UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID... 383 e-105 UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevib... 381 e-104 UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cell... 379 e-103 UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria Re... 378 e-103 UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiale... 377 e-103 UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetal... 377 e-103 UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiace... 376 e-102 UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobiu... 374 e-102 UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacill... 372 e-102 UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aerom... 372 e-102 UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus... 372 e-101 UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdema... 371 e-101 UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella R... 371 e-101 UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium ... 370 e-101 UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacill... 369 e-100 UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaprot... 368 e-100 UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiace... 368 e-100 UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospor... 367 e-100 UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacte... 367 e-100 UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae Re... 366 e-100 UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas... 366 e-100 UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pa... 366 e-100 UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria Rep... 365 1e-99 UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranu... 361 2e-98 UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla ... 360 6e-98 UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax... 359 7e-98 UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacte... 359 8e-98 UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidami... 359 1e-97 UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein... 359 1e-97 UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteob... 358 1e-97 UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacill... 358 2e-97 UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacter... 358 3e-97 UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus... 357 4e-97 UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria Re... 356 5e-97 UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocyst... 356 6e-97 UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacil... 356 1e-96 UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 T... 355 1e-96 UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria Re... 355 1e-96 UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacter... 355 1e-96 UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified E... 354 2e-96 UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C... 354 2e-96 UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostri... 353 6e-96 UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium c... 352 1e-95 UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworth... 351 2e-95 UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2... 350 4e-95 UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 349 6e-95 UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 349 1e-94 UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomona... 348 1e-94 UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria ... 348 2e-94 UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes R... 348 2e-94 UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaero... 348 2e-94 UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales ... 347 2e-94 UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4... 346 7e-94 UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostoc... 345 1e-93 UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromon... 344 2e-93 UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobaci... 343 5e-93 UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteri... 343 5e-93 UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bactero... 343 6e-93 UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacte... 342 1e-92 UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria Re... 342 1e-92 UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine s... 341 2e-92 UniRef50_B0MP08 Putative uncharacterized protein n=1 Tax=Eubacte... 340 5e-92 UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter s... 340 5e-92 UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia Re... 339 7e-92 UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacte... 339 1e-91 UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteob... 339 1e-91 UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes R... 339 1e-91 UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacte... 339 1e-91 UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clost... 339 1e-91 UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes Re... 339 1e-91 UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia m... 338 1e-91 UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 338 2e-91 UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivib... 337 3e-91 UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella ... 336 5e-91 UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococ... 336 6e-91 UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium Rep... 336 7e-91 UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 336 8e-91 UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus... 336 8e-91 UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 336 9e-91 UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 336 1e-90 UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimo... 335 1e-90 UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 335 1e-90 UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales... 335 1e-90 UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira R... 335 2e-90 UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteri... 334 2e-90 UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 334 2e-90 UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacte... 334 4e-90 UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=... 333 5e-90 UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular or... 333 5e-90 UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bactero... 333 7e-90 UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothr... 332 2e-89 UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteo... 332 2e-89 UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira b... 331 3e-89 UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Rumin... 330 5e-89 UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteob... 330 5e-89 UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales R... 330 5e-89 UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilu... 327 3e-88 UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ell... 326 8e-88 UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coproco... 326 1e-87 UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas ... 325 1e-87 UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteri... 325 2e-87 UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus ... 325 2e-87 UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacil... 324 2e-87 UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistip... 323 5e-87 UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacte... 323 6e-87 UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteob... 323 6e-87 UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetell... 321 3e-86 UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteob... 320 4e-86 UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium oc... 320 4e-86 UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root Re... 320 5e-86 UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidip... 320 6e-86 UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermac... 319 7e-86 UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacter... 319 9e-86 UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomona... 319 1e-85 UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter ... 318 2e-85 UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacte... 317 3e-85 UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Te... 317 4e-85 UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n... 317 5e-85 UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidete... 316 9e-85 UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular o... 315 1e-84 UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine syn... 315 2e-84 UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Ta... 314 3e-84 UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium... 313 7e-84 UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacter... 313 7e-84 UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collins... 312 9e-84 UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methyl... 312 1e-83 UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibri... 311 2e-83 UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogace... 310 4e-83 UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9... 310 4e-83 UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera ... 310 4e-83 UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia ... 310 6e-83 UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacter... 310 6e-83 UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrob... 310 6e-83 UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabact... 310 6e-83 UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae... 309 8e-83 UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collins... 309 8e-83 UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 309 1e-82 UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibr... 309 1e-82 UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas... 309 2e-82 UniRef50_D2MND8 D-ala D-ala ligase N-terminal domain protein n=2... 308 2e-82 UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcu... 308 2e-82 UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma w... 308 2e-82 UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 308 3e-82 UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteria... 307 4e-82 UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces... 307 4e-82 UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis... 305 2e-81 UniRef50_Q821S4 D-alanine--D-alanine ligase n=15 Tax=Chlamydiace... 305 2e-81 UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrob... 305 2e-81 UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aph... 304 3e-81 UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfov... 304 3e-81 UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella... 304 4e-81 UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp... 304 5e-81 UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovi... 302 1e-80 UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobact... 302 2e-80 UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacill... 302 2e-80 UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteo... 301 2e-80 UniRef50_A6CDT2 D-alanine--D-alanine ligase n=1 Tax=Planctomyces... 301 2e-80 UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 301 2e-80 UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis v... 301 2e-80 UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga ole... 301 3e-80 UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aph... 301 3e-80 UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified... 300 6e-80 UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteo... 300 7e-80 UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=... 300 7e-80 UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=D... 299 1e-79 UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteo... 299 1e-79 UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundu... 298 2e-79 UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermob... 298 3e-79 UniRef50_C0BG03 D-alanine--D-alanine ligase n=1 Tax=Flavobacteri... 297 6e-79 UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriac... 295 2e-78 UniRef50_UPI0001AF4ABE D-alanine--D-alanine ligase n=1 Tax=Salmo... 293 5e-78 UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q87... 293 7e-78 UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostri... 293 8e-78 UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsiea... 292 1e-77 UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteob... 292 2e-77 UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine s... 291 2e-77 UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=... 290 7e-77 UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatron... 290 7e-77 UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirill... 289 8e-77 UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus P... 289 1e-76 UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister in... 288 2e-76 UniRef50_C0VTV5 D-alanyl-alanine synthetase A n=2 Tax=Corynebact... 287 3e-76 UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae... 287 3e-76 UniRef50_A4Y6E2 D-alanine--D-alanine ligase n=18 Tax=Shewanella ... 286 7e-76 UniRef50_Q60GK8 D-alanyl-D-alanine ligase n=2 Tax=Streptomyces R... 286 1e-75 UniRef50_C3WFS8 D-alanine-D-alanine ligase n=6 Tax=Fusobacterium... 284 3e-75 UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira ... 283 7e-75 UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT 281 2e-74 UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicro... 280 6e-74 UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella... 279 8e-74 UniRef50_A1SMF1 D-alanine--D-alanine ligase n=1 Tax=Nocardioides... 279 1e-73 UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomyceta... 279 1e-73 UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirill... 278 2e-73 UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia Re... 277 4e-73 UniRef50_B0MM64 Putative uncharacterized protein n=1 Tax=Eubacte... 275 1e-72 UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomyceta... 275 1e-72 UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Strep... 275 1e-72 UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexi... 275 2e-72 UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces ... 270 4e-71 UniRef50_B8DLD4 D-alanine--D-alanine ligase n=1 Tax=Desulfovibri... 270 5e-71 UniRef50_Q6A5C1 D-alanine--D-alanine ligase B n=4 Tax=Propioniba... 269 1e-70 UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriac... 268 2e-70 UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma ce... 268 3e-70 UniRef50_Q8RDQ4 D-alanine--D-alanine ligase n=10 Tax=Fusobacteri... 266 8e-70 UniRef50_B9KHS3 D-alanine--D-alanine ligase n=5 Tax=Anaplasma ma... 266 1e-69 UniRef50_Q6ME77 Putative D-alanine--D-alanine ligase n=1 Tax=Can... 263 6e-69 UniRef50_D0RN14 D-alanine--D-alanine ligase B (D-alanylalanine s... 261 3e-68 Sequences not found previously or not previously below threshold: >UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria RepID=DDL_BAUCH Length = 375 Score = 453 bits (1165), Expect = e-126, Method: Composition-based stats. Identities = 225/359 (62%), Positives = 282/359 (78%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVGI+FGG+SAEHEVSLQSAKNIV+ ID+++F+VVL GIDK+GQWH+++ NYL+ Sbjct: 1 MAKLRVGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIY 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ +IAL S +A +PG+ Q I + L +DVIFPIVHGTLGEDG+LQG+L Sbjct: 61 GENETYIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGEDGNLQGLL 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 R+ANLPFVGS VL SA MDKD+ KRLLRDA L + P ITLTR NR N S+ ++ + LG Sbjct: 121 RMANLPFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRENFSYDQIITYLGS 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 LFVKPANQGSSVGVSKV + + A+ LAF FD KV+VE I GRE+ECAVLGN +PQ Sbjct: 181 SLFVKPANQGSSVGVSKVINRISFDQALALAFCFDDKVLVESAINGRELECAVLGNHDPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS CGEIVL+ +FY+Y+ KY++E GA VVVPAAI+ E+++ I+ IAV+A+Q L C GMAR Sbjct: 241 ASLCGEIVLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 VDVFLT N+V++NE+NT PGFT+ISMYPKLWQASG+ Y LITRLIELA+ER+ A+ Sbjct: 301 VDVFLTTNNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIELAIERYYAEQK 359 >UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia RepID=DDL_THEP3 Length = 359 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 149/359 (41%), Positives = 236/359 (65%), Gaps = 6/359 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEK ++ ++FGG+S EHEVSL SAK+I++ +DK ++++ ++GI K+G+W++ + Sbjct: 1 MEKKKIAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + A A + D +NG +DV+FP++HG GEDG++QG+L Sbjct: 61 TGEWEKEGI--PAIMGASTKYRGIITFEDGENG--FYPIDVVFPVLHGPNGEDGTIQGLL 116 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI-SFAEVESKLG 179 + ++P+VG++VL+SA CMDK TKR+ ++AGL F+ + ++ + + LG Sbjct: 117 ELLDMPYVGANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIEDLEAIKKKIEHLG 176 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P FVKPAN GSSVG++KV +EE+ A+ LA ++D K+++E+GI REIEC+VLGN+NP Sbjct: 177 YPCFVKPANLGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENP 236 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GEIV +++FY Y+ KY D + +++PA + E +++R +A++AY+ L GMA Sbjct: 237 EASIAGEIVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMA 296 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 RVD + + +NE+NT+PGFT ISMYPKLW++SG Y+ L+ LI LA+E H Sbjct: 297 RVDFLMDRNTGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLLDELINLAVESHNEK 355 >UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=DDL_CLOCE Length = 376 Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 171/373 (45%), Positives = 233/373 (62%), Gaps = 10/373 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K RV I+FGG+S+EHEVS SA+++++ IDK ++DV ++GI K GQW D + Sbjct: 1 MSKKRVAIIFGGQSSEHEVSRVSAQSVIENIDKQKYDVEIIGITKSGQWLKYDGPVEKIG 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEH-----QLIDAQNGQPLPTVDVIFPIVHGTLGEDGS 115 D IA + SL+Q + G +DVIFP++HG GEDG+ Sbjct: 61 NGDWEAIAQKKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGT 120 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFA 172 +QG+ +A +P+VG VL SA MDK TK + GL ++ R NR A Sbjct: 121 IQGLFELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVA 180 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 ++E +L P FVKP+N GSSVGV+K + E A+++A + D +++VE+ I GREIECA Sbjct: 181 QIEGRLTYPCFVKPSNAGSSVGVNKASDRESLVKALNIAAKNDRRILVEEFINGREIECA 240 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAA-IAPEINDKIRAIAVQAYQ 291 VLGNDNP AST GE+V +DFY Y+ KY D +KVV+PA ++ E +KIR AV+A++ Sbjct: 241 VLGNDNPVASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSKETVEKIREYAVRAFK 300 Query: 292 TLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L CAG++RVD F+ E E+ INEINTLPGFT ISMYPKLW ASG+ Y++LI +LIELA Sbjct: 301 CLDCAGLSRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAASGIPYSELINKLIELA 360 Query: 351 LERHAADNALKTT 363 ER+ T Sbjct: 361 FERYEDTRREYTN 373 >UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria RepID=DDL_CLOTH Length = 376 Score = 432 bits (1112), Expect = e-120, Method: Composition-based stats. Identities = 156/366 (42%), Positives = 231/366 (63%), Gaps = 14/366 (3%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K RV ++FGG+S+EHEVS SA +I+ I+ +FDV ++GI K G+W D + + Sbjct: 3 DKKRVLVIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPS 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEH---------QLIDAQNGQPLPTVDVIFPIVHGTLGE 112 + IAL+ S+A ++ L A + +DV+FP++HG GE Sbjct: 63 GEWEEIALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGE 122 Query: 113 DGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NI 169 DG++QG+ +A +P+VG VLASA MDK K + AG+ A ++ TR + Sbjct: 123 DGTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEG 182 Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 ++E K P+FVKP+N GSSVGVSK + + A+ A +D KV++E+ I GRE+ Sbjct: 183 VVDKIEEKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAARYDRKVLIEEFINGREV 242 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 ECAVLGND+P AST GEI+ ++FY Y KYI E+ +K+ +PA + E ++IR AV+A Sbjct: 243 ECAVLGNDDPVASTVGEIIPGNEFYDYKAKYI-ENTSKIKIPADLPEETVEQIRNYAVKA 301 Query: 290 YQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 ++ L C+G+ARVD F+ E +V INEINT+PGFT+ISMYP LW+ SG+ Y +LI +LI+ Sbjct: 302 FKALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLID 361 Query: 349 LALERH 354 LA++R+ Sbjct: 362 LAVQRY 367 >UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio bacteriovorus RepID=DDL_BDEBA Length = 365 Score = 426 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 167/365 (45%), Positives = 247/365 (67%), Gaps = 5/365 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K+ V ++FGGKSAEHEVSL+SAKN+ DA+DK +F VL+GI K+G W+ Sbjct: 3 MKKI-VALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTE 61 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 A AL A +A + + + L ++ VDV FPI+HGT+GEDG++QG+ Sbjct: 62 ATKIVDSALPSKAEPVALMSLQGKPVLYSLKDHSKTA-VDVAFPILHGTMGEDGTIQGLF 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ LPFVG V +SAA MDK++ KRLL A + A ++ LT ++ + E+ +LG Sbjct: 121 KMVQLPFVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKN--DYNEIVKELGS 178 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-P 239 P F+KPAN GSSVGV K+ + E + + + AF+FD KV+ E+ I+GRE+EC+V+G+++ P Sbjct: 179 PFFIKPANAGSSVGVHKIKTAEDFVVKLKDAFQFDTKVLAEEFIQGREVECSVMGHNHAP 238 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GE++ +FY+Y+ KYID++GA + +PA ++PE ++ +A Q YQ +GC G+ Sbjct: 239 KASLPGEVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTYQAMGCDGLT 298 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 RVD F+ P E+ INEINT+PGFT ISMYPK+W+ASGL Y DLI++LI+L E+ + + Sbjct: 299 RVDFFIRPNGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQLGFEKFEGEQS 358 Query: 360 LKTTM 364 LKT+ Sbjct: 359 LKTSY 363 >UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobacterium hafniense RepID=B8FWD5_DESHD Length = 361 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 163/366 (44%), Positives = 228/366 (62%), Gaps = 9/366 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M + ++ I+FGG+S EHEVSL SA +++ AID+ ++++ +GI K GQWH Sbjct: 1 MTRQKIIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQ 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 AL LA P +D + +IFP++HG GEDG++QG+ Sbjct: 61 DP-----ALEGIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLF 115 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESK 177 +AN+P+ GS VL SA MDKD K + +AGL AP+IT+ R +E Sbjct: 116 EMANIPYAGSGVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHS 175 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 LG P FVKPAN GSSVG+SK + E+ A+ LA E+D K++VEQ I GREIE +VLGN+ Sbjct: 176 LGYPCFVKPANLGSSVGISKARNREELIQALQLAAEYDRKLVVEQNIVGREIELSVLGNE 235 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + QAS GEI+ DFY Y+ KYID G+++V+PA +APE+ ++ AV A++ + G Sbjct: 236 DAQASIPGEILPAKDFYDYEAKYID-TGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACG 294 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 ++RVD F+T ++ INEINT+PGFT ISMYPKLW+ASG+ YT+LITRLIEL +R Sbjct: 295 LSRVDFFVTEGGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIELGFQRFRDS 354 Query: 358 NALKTT 363 + K + Sbjct: 355 RSRKIS 360 >UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia RepID=DDL_NATTJ Length = 365 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 156/368 (42%), Positives = 235/368 (63%), Gaps = 10/368 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+KLRVG++FGG+S EHEVSL+SA +I++A+D+ F+V+ +GI K G+W +A L Sbjct: 1 MKKLRVGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAPLEELE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +++ +P + L + + +D+IFP++HGT GEDG++QG L Sbjct: 61 TG-----IKNQGNYAVSILPDPSKKVLWKLDPFEKISEIDLIFPVLHGTFGEDGTVQGFL 115 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESK 177 + +P+VGS VL S+ MDK + K++LR GL +A + + R+ + +E + Sbjct: 116 DLCGIPYVGSGVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFSIEKQ 175 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SKV + E+ +DLA ++D K + E+ I G+EIE ++LGND Sbjct: 176 LSYPIFVKPANLGSSVGISKVKNREELIQGIDLAVKYDMKCLAEEFIPGKEIELSILGND 235 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 NP+ S GEI+ ++FY Y+ KYI+ + +K+V+PA ++ + KI + V+A++ L C G Sbjct: 236 NPKTSVPGEIIPANEFYDYNAKYIN-NKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCYG 294 Query: 298 MARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 ++RVD F+ + EV INEINT+PGFT ISMYPKLW SGL Y+ L+T LI LAL R Sbjct: 295 LSRVDYFVLEDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLLTDLIYLALARQQE 354 Query: 357 DNALKTTM 364 + T Sbjct: 355 KDRNSTDF 362 >UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular organisms RepID=DDL_ANAVT Length = 367 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 163/365 (44%), Positives = 228/365 (62%), Gaps = 13/365 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASN 56 M KLRVG++FGG+S EHEVS+ SA+ I A+ + S+++++ I K G+W +A Sbjct: 1 MSKLRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQ 60 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 +L + P + S+ + + + L Q+ + VDV FPI+HG GEDG++ Sbjct: 61 QVLKSGAPL-LESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTI 119 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF----- 171 QG+L + PFVGS VL SA MDK K AGL + +TRA + Sbjct: 120 QGLLTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKL 179 Query: 172 -AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 E+E+ LG P FVKPAN GSSVG+SKV S ++ A+D A +D ++IVE G+ RE+E Sbjct: 180 CDEIEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIVEAGVVAREVE 239 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 CAVLGND PQAST GEI SDFY Y+TKY A +++PA I EI+ +I+ +A+QA+ Sbjct: 240 CAVLGNDQPQASTVGEITFNSDFYDYETKYT-AGKADLLIPAVIPDEISRQIQDMALQAF 298 Query: 291 QTLGCAGMARVDVF-LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + AG+ARVD F + EV+INEINTLPGFT SMYP+LW SG+ + +L+ +L++L Sbjct: 299 AAVDAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLVQL 358 Query: 350 ALERH 354 A+ERH Sbjct: 359 AIERH 363 >UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia RepID=DDL_CALS8 Length = 364 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 142/368 (38%), Positives = 234/368 (63%), Gaps = 12/368 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL+V ++FGG S EHEVS+ SAK+++ +DK +++++ +GI K+G+W + L+ Sbjct: 1 MTKLKVAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLD 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP-LPTVDVIFPIVHGTLGEDGSLQGM 119 + + P + + L+ ++ + +DV+FP++HG GEDG++QG+ Sbjct: 61 S------KWTMYSIECFISPDRTKKALVKIKDSEATFIDIDVVFPVLHGLNGEDGTVQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVES 176 L ++ +P+VG VL+SA CMDK K+L G+ F+ + + + +ES Sbjct: 115 LELSGIPYVGCGVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIES 174 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 + P+FVKPAN GSSVG+SK +++ +A+ AF +D K+++EQ I REIECAVLGN Sbjct: 175 EFSYPVFVKPANSGSSVGISKAKDKDELILAIHEAFLYDTKILIEQAINAREIECAVLGN 234 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEIV + +FY+Y+ KYID +++++PA + ++ D+I+ +AV+ Y+ C+ Sbjct: 235 SEILVSALGEIVPSREFYSYEAKYID-GSSELIIPAKLEKQVEDEIKELAVKIYKLFECS 293 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 GMAR+D F+ E N+V NE+NT+PGFT+ISMYPKL + SG+ Y L+ +LI+LA+E++ Sbjct: 294 GMARIDFFVDKETNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLAIEKNQ 353 Query: 356 ADNALKTT 363 ++K + Sbjct: 354 QKQSIKYS 361 >UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria RepID=DDL_HELMI Length = 366 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 157/364 (43%), Positives = 220/364 (60%), Gaps = 12/364 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + ++ GG+S EHEVSL SA++IVDA+D+ RF+V+ +GID+ G W + N Sbjct: 1 MMKQTIAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGS------N 54 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP-TVDVIFPIVHGTLGEDGSLQGM 119 D +P + +P LI+ P VDV FP++HG GEDG++QG+ Sbjct: 55 VIDNLRKGQQPYGQRVYFIPDPTCPGLIEENPVTRKPVPVDVFFPVLHGPNGEDGTIQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVES 176 AN+P+VG VLASA MDK + K L + L P++ + R EVE Sbjct: 115 FEAANVPYVGCGVLASACGMDKAIMKALFAQSDLPQLPYLVVLRNRWESAREQVIDEVED 174 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 +LG P FVKPAN GSSVG+SK T+ + A D A +D K+IVE+GI REIE +VLGN Sbjct: 175 RLGYPCFVKPANMGSSVGISKATNRAELVAAFDDAVRYDRKLIVEKGINVREIEVSVLGN 234 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D AS GEIV +FY YD KY D +++++PA IA + +A++A++ + + Sbjct: 235 DEVVASVPGEIVPAHEFYDYDAKYAAAD-SRLLIPAPIAAADVATFQEMAIRAFRAIDGS 293 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G++RVD L EV INEINTLPGFT+ISMYPKLW+A+G+ Y +L++RL++L L R+ Sbjct: 294 GLSRVDFLLDKNSGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVDLGLARYR 353 Query: 356 ADNA 359 Sbjct: 354 EKQR 357 >UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria RepID=C1F9Q0_ACIC5 Length = 400 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 170/401 (42%), Positives = 241/401 (60%), Gaps = 38/401 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL- 59 M+KLR+GI+FGG+S EHEVSL SA +I+ AID+ +++VV +GI KQG+W +DA+ LL Sbjct: 1 MKKLRIGILFGGRSGEHEVSLLSAASILKAIDRKKYEVVPIGITKQGRWVTADAAELLLA 60 Query: 60 --------------------------NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG 93 + + A+ A VP + + + A + Sbjct: 61 NGSAKAEPRPLRAGDPDTTPGAAVLAKGEAVIVPPVPQQASQGALVPFETQASTLTADSA 120 Query: 94 QPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL 153 + +D+IFP++HGT GEDG++QG+L +A + +VGS VL SA MDKD+ KRL A L Sbjct: 121 RQALQLDIIFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAKL 180 Query: 154 NIAPFITLTRANRHNIS---FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL 210 I +T R ++E+ L P+FVKPAN GSSVG+SK ++ A++L Sbjct: 181 PITKHVTFLRPEWEKNPRKITTQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAIEL 240 Query: 211 AFEFDHKVIVEQGIKG-----REIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDG 265 A FD K++VEQG+ G RE+E AVLGN+ P+AS GEIV +FY Y+ KY+ E Sbjct: 241 AAGFDRKIVVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSEGS 300 Query: 266 AKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP--ENEVVINEINTLPGFT 323 ++PA + + +IR +AV A++ CAG+ARVD + P + +NEINTLPGFT Sbjct: 301 V-PIIPAKLTKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPGFT 359 Query: 324 NISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTTM 364 +ISMYPKLW+ASGL Y+ LI RLIELA ER A + + ++ Sbjct: 360 SISMYPKLWEASGLPYSKLIDRLIELARERRAEQDRNRYSL 400 >UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizobium japonicum RepID=DDLA_BRAJA Length = 373 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 157/365 (43%), Positives = 231/365 (63%), Gaps = 6/365 (1%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K+RV +++GG+S EHEVSL+SA ++ +D++RF+V+ + IDK G+W +D + Sbjct: 3 DKIRVVVLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQAH 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 I LA+ P + Q +DV+FP++HG L EDG++QG+L Sbjct: 63 AAALPILPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGLLE 122 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKL 178 +A++ +VGS VLASA MDKDV KRL AG+ +AP+ LTR S A+ L Sbjct: 123 LADVAYVGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLAKAVEGL 182 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 LP+FVKP N GSSVG+ KV +++ A+D AF +D KV+V+QGI REIE AVL ++ Sbjct: 183 SLPVFVKPCNMGSSVGIHKVKTQDALEAALDDAFRYDVKVLVQQGIDAREIEVAVLEDET 242 Query: 239 PQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 AS E+ +FY+Y+ KY+D DGA+V +PA + +++R++A + + L C+ Sbjct: 243 LFASLASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVFAALECS 302 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G ARVD FL + E NEINTLPGFT+ISMYPK+ +ASG+ Y +L++RL++LAL+RH Sbjct: 303 GFARVDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVDLALDRHR 362 Query: 356 ADNAL 360 +L Sbjct: 363 QRQSL 367 >UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepID=B9YQN3_ANAAZ Length = 394 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 152/366 (41%), Positives = 217/366 (59%), Gaps = 27/366 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS----RFDVVLLGIDKQGQWHVSDASN 56 M KLRVG++FGG+S EHEVS+ SA+ I +A+ +++++ I K G W + + Sbjct: 44 MSKLRVGLLFGGRSGEHEVSIISARGIANALSAEENSHKYEIMPFYIQKDGFWQAGEVAQ 103 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 +L + + PG + Q +D+ FPI+HG GEDG++ Sbjct: 104 QVLTSG------------VAKEHPGNRANLW---QFPPQTAEIDLWFPILHGPNGEDGTI 148 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF----- 171 Q +L + +PFVGS VL SA MDK K AGL + LTRA + Sbjct: 149 QALLTLMQVPFVGSGVLGSATGMDKIAMKTAFAQAGLPQVKYKALTRAQIWSNPCVFPKL 208 Query: 172 -AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 E+E+ LG P FVKPAN GSSVG++KV S ++ A+D A +D ++IVE G+ RE+E Sbjct: 209 CDEIEATLGYPYFVKPANLGSSVGIAKVQSRQELEAALDNAATYDRRIIVEAGVVAREVE 268 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 CAVLGNDNP+AS GEI SDFY Y+TKY + A + +PA + +I+ A+QA+ Sbjct: 269 CAVLGNDNPKASVIGEITFDSDFYDYETKYT-QGKADLFIPAHLPESAVQQIQEKALQAF 327 Query: 291 QTLGCAGMARVDVF-LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + AG+ARVD F + E++INEINTLPGFT+ SMYP+LW +G+ + L+ +LI+L Sbjct: 328 TAVDAAGLARVDFFYVEATGEILINEINTLPGFTSTSMYPQLWANTGISFPKLVDQLIQL 387 Query: 350 ALERHA 355 A+ERH+ Sbjct: 388 AMERHS 393 >UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB62_BREBN Length = 375 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 142/363 (39%), Positives = 229/363 (63%), Gaps = 9/363 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K+R+GI++GGKS+EHEVSL++A +I+ A+D ++++V + + G W + L Sbjct: 4 QKIRLGIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGETLAGQL-P 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP---TVDVIFPIVHGTLGEDGSLQG 118 D + L + + + +++G +DV+FP+VHG GEDG++QG Sbjct: 63 DKIEALRLSAKTPVSNEATETGQELAVTSKSGSLFAMNEQMDVVFPVVHGPFGEDGTIQG 122 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVE 175 +L +AN+P+VG+ V+ASA MDK + K + AGL ++ L R+ + +E Sbjct: 123 LLELANIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDDVMDRIE 182 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 +LG P FVKPAN GSSVG++K + E+ A+D+A +FD ++IVE+ ++ RE+E VLG Sbjct: 183 RELGYPCFVKPANMGSSVGINKAKNREELKHALDVAAKFDRRLIVEEFVQVRELEIGVLG 242 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N+ S GE++ +FY Y+ KY G ++ +PA + ++++I IA QA+Q L Sbjct: 243 NEELMTSVVGEVIAAKEFYDYEAKY-KGAGTELSIPAIVPEHVSEQIAEIAKQAFQALDG 301 Query: 296 AGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +G++RVD F +N ++ INE+NT+PGFT SMYP L+QA+G+GY++LI RL++LA+ERH Sbjct: 302 SGLSRVDFFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVGYSELIDRLVQLAIERH 361 Query: 355 AAD 357 A Sbjct: 362 ADK 364 >UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi (class) RepID=DDL_HERA2 Length = 361 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 152/359 (42%), Positives = 225/359 (62%), Gaps = 8/359 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWH-VSDASNYLL 59 M K RVGIVFGGKS EHEVSL+SA+ +++A+D ++ V+ +GI + GQW D L Sbjct: 1 MTKRRVGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRNGQWLSGGDPLLALE 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D + P A +++ + Q + +DVI P++HG GEDG++QG+ Sbjct: 61 QQADQKMLGRTPQAGVVSETAIVQSAGSLPEQTN--VAALDVIIPVLHGPFGEDGTIQGV 118 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVES 176 ANLP+VG VLA++ MDK + K AGL P+ + R + + +E+ Sbjct: 119 FEFANLPYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEAVYERLEA 178 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L P+FVKPAN GSSVG+SKV++ + A + A +D +++VEQGI REIE A+LGN Sbjct: 179 TLHYPMFVKPANLGSSVGISKVSNRAELATGMAEAAGYDRRIVVEQGINAREIEVAILGN 238 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D+P+ S GE++ +DFY Y KY+ E + +PA + ++++R +AV A++ + A Sbjct: 239 DDPKPSVPGEVLPANDFYDYADKYL-EGQTQFAIPAELDAATSEQLREMAVTAFKAIDGA 297 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G+ARVD F+ E + INEINT PGFT +S YPKLW+A+GLGY++L+ RLI+LA+ER+ Sbjct: 298 GLARVDFFVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELLDRLIDLAIERY 356 >UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermothrix orenii H 168 RepID=DDL_HALOH Length = 343 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 148/357 (41%), Positives = 222/357 (62%), Gaps = 17/357 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLR+G++FGG+S EHEVS+ SA+++V K ++ V+ GI K+GQW + S +LN Sbjct: 1 MSKLRLGVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + +V + + ++ +D++FP++HG GEDG LQG L Sbjct: 61 -------------NGINEVKASKDRCITESVRVFLDHKLDIVFPVLHGPYGEDGKLQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESK 177 ++P++G+ VL+SAA MDK++ K L + A + + N + +E++ Sbjct: 108 DCLDIPYIGASVLSSAAGMDKEIMKNLFSYHKIPQARYRVYRQNHLENGLDGIISEIDRF 167 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 LG P FVKPAN GSS+GVSKV S + A++ F +D K+I E+ ++GREIEC+VLGND Sbjct: 168 LGWPCFVKPANMGSSIGVSKVHSPGEVKKALEKGFYYDRKLIFEEFVEGREIECSVLGND 227 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +AS GEI+ +FY Y+ KY D + ++V+PA++ + DK R +A++A++ + G Sbjct: 228 QVEASLPGEILPGKEFYDYEAKYKD-NKTRLVIPASLDESVIDKARNLAIKAFKAIDGNG 286 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 ARVD FL +++NEINT+PGFT SMYPKLW+A+GL Y DLI +LIELALE Sbjct: 287 FARVDFFLKNNGVLLVNEINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIELALEDR 343 >UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCJ4_THET1 Length = 362 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 155/361 (42%), Positives = 240/361 (66%), Gaps = 12/361 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M++ R+ ++FGG+SAEH+VS+ SA +++ A+ S D++ GI ++G W V + + +L Sbjct: 1 MKRYRLLLLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKMLA 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + VP + + + + L VDV+FP++HG GEDG++QG L Sbjct: 61 SS----ALFAGDSDVRDIVPVDSQPRSVP----EALSAVDVVFPLLHGPYGEDGTVQGFL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESK 177 + N+P+VGS VL S+ MDK K++ GL I ++ + R++ + +++ES+ Sbjct: 113 ELVNVPYVGSGVLGSSLSMDKIAMKKMFESEGLPITRYLGILRSDWLSDPEGIISKIESE 172 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSS+G++K A++LA ++D ++IVEQG++ RE+ECAVLGND Sbjct: 173 LEYPVFVKPANLGSSIGITKAKDRSSLLQALELASKYDRRLIVEQGVEARELECAVLGND 232 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+AS GEI+ +FY ++ KYI E +K ++PA I P ++D+IR AV+A++ + AG Sbjct: 233 YPRASVVGEILPGDEFYTFEAKYISES-SKTIIPADIPPSVSDEIRDYAVRAFKAVDAAG 291 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 +ARVD FLT EN+V++NEINT+PGFT ISMYPKLW+ASGL Y DL+ +L++LA+ERHA Sbjct: 292 LARVDFFLTSENKVLVNEINTIPGFTPISMYPKLWEASGLSYPDLVRKLLDLAMERHADK 351 Query: 358 N 358 Sbjct: 352 Q 352 >UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteobacteria RepID=DDL_BLOPB Length = 368 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 186/359 (51%), Positives = 254/359 (70%), Gaps = 10/359 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL +GI+ GG+S EHE+SL+SA I IDK RF+ ++L IDK+G WH+ D ++ Sbjct: 1 MSKLCIGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKD-----ID 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D ++ + L P + +N L DVIFP+VHGTLGEDG+LQG+L Sbjct: 56 FNDLSYHKDEKISILLQNCPYPFKFH---TKNINILLKFDVIFPVVHGTLGEDGALQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + NLPFVGS+VL+S+ MDKDV+K LLRDAGL++ PF T+ ++HNI F S GL Sbjct: 113 CMMNLPFVGSNVLSSSVGMDKDVSKCLLRDAGLSVVPFRTVLAQDQHNIDFDYFVSIFGL 172 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKP+NQGSS+GVSKVT + + +A+ AF F +K+++E I GRE+ECAVLGNDNP+ Sbjct: 173 PLFVKPSNQGSSIGVSKVTKCKDFNLALIKAFSFSNKILIEPAIIGRELECAVLGNDNPK 232 Query: 241 ASTCGEIVLT-SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 S CGE++L+ ++FY Y KY+ + A++++PA I I+D IR IA++A+Q L C+GMA Sbjct: 233 ISVCGEVILSDNNFYTYHDKYV-KRKAQIMIPALINDAISDDIRHIALRAFQVLNCSGMA 291 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 RVDVFL +N++ INE+NTLPGFT SMYPKLW+ SGL +LIT+L+ELAL+ H N Sbjct: 292 RVDVFLNLDNKIFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELALDLHDKKN 350 >UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUR2_9FIRM Length = 367 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 149/366 (40%), Positives = 222/366 (60%), Gaps = 8/366 (2%) Query: 1 MEK--LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 ME+ +++ +++GG+SAEH++SL SA NI+ +I + ++V + I KQG W + Sbjct: 1 MEELYMKIVLLYGGQSAEHDISLISAHNIMQSIMYNYYEVQPVYITKQGDWLKGAPLSGP 60 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 L+ + + P A G+ LI + + T+ +FP++HG GEDG++QG Sbjct: 61 LSHSNQLALTAGPQARWAEGPEGQSVGTLIQPGDIKEADTI--VFPVLHGPNGEDGTIQG 118 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVE 175 L V +P+VG+ V ASA MDK ++K+L AGL P++ E Sbjct: 119 FLEVLGMPYVGAGVTASACGMDKVISKQLFHQAGLPQVPYVAFDSREWAQSPEEWMNRCE 178 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L PLFVKPAN GSSVG+SK T+ E+ AV+ A +FD +++VEQGI +E E AVLG Sbjct: 179 GNLLYPLFVKPANMGSSVGISKATTTEELRAAVEKALQFDRRIVVEQGISAQECEVAVLG 238 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ND+ AS G +V T+DFY YD KY++ + ++ +PA + I+DKI+ A++AY+ L Sbjct: 239 NDDAHASVVGRLVKTADFYDYDEKYVN-NTVEMEIPAQLPDAISDKIQEYALRAYRALDG 297 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G++RVD F+T +++ INEINT+PGFT SMYP LW+A+GL DLI L++LAL+ Sbjct: 298 KGLSRVDFFVTASHDIYINEINTMPGFTPYSMYPCLWEATGLNTRDLIEELLQLALKSFE 357 Query: 356 ADNALK 361 A K Sbjct: 358 DKQAYK 363 >UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG04_9FIRM Length = 357 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 164/357 (45%), Positives = 221/357 (61%), Gaps = 6/357 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K V ++FG S+E+EVSL+SA +++ I + R+DVV+LGI K G+W S + Sbjct: 1 MGKKTVAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D P + L +G VD +FP++HG EDG++QG+L Sbjct: 61 SDRWLQNG--PVTPAFISPDRGAGGILRLLPDGPQPVAVDAVFPVLHGEHSEDGAIQGLL 118 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE--VESKL 178 +A L +VG VLASAACMDK VT +L AG+ + P+ LTR + E + +K Sbjct: 119 EMAGLAYVGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGALAHFDETERMLAAKH 178 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 G P+F+KPAN GSSVGV K A+ AF FD KVI E + G E+ECAVLGN D Sbjct: 179 GYPMFIKPANTGSSVGVGKAKDAGGLCAALSEAFRFDRKVIAETAVVGDELECAVLGNFD 238 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +AS GEIV +FY Y KY+D D + +PA I+ E +++IR AV+A+ +GC G Sbjct: 239 RAEASCVGEIVPRHEFYDYSGKYLD-DSTDLYIPARISGEASERIRQTAVRAFAAMGCTG 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 ++RVD FLT E VV+NEINTLPGFT+ISMYPKL++A GL Y +LI+RLIELA E+H Sbjct: 298 LSRVDFFLTREGRVVLNEINTLPGFTSISMYPKLFEAVGLPYPELISRLIELAFEKH 354 >UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizobium RepID=DDLA_RHILO Length = 357 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 160/360 (44%), Positives = 228/360 (63%), Gaps = 9/360 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK RV I++GG+SAEH+VS SA N++ AID++R++VV + I + G+W + +S Sbjct: 3 EKTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSE---AG 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A + +A +PG + +NG+ VDV+FP++HG GEDGS+QG Sbjct: 60 ADGAGAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAE 119 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 VA++ +VG +LASAA MDKDV KRLLR+AGL +A +T+ + + SF E+ LGLP Sbjct: 120 VADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGD--VGSFQEIAGALGLP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNP 239 F KPA QGSS GVSKV + + AV+ A +D K ++E+ + GREIEC+VL + + Sbjct: 178 FFAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSL 237 Query: 240 QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEI+ FY Y+ KY D +GA V VPA + ++ + +A +A++ LGC Sbjct: 238 TVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEA 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 MARVD FL + +++NE+NTLPGFT+ISMY K A+G+GY+ +I LIE AL RH A Sbjct: 298 MARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALARHRAR 357 >UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales RepID=DDL_STAA1 Length = 356 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 146/367 (39%), Positives = 217/367 (59%), Gaps = 15/367 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + IVFGGKSAEHEVS+ +A+N+++AIDK ++ V ++ I G W + + Sbjct: 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + D H+ G+ + D +FP++HG GEDG++QG+ Sbjct: 61 STDELHLEN-----------GEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLF 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESK 177 V ++P+VG+ VL++A+ MDK V K+L GL P+I+ R+ V K Sbjct: 110 EVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDK 169 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SK +E + + AF+FD K+++EQG+ REIE AVLGND Sbjct: 170 LNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGND 229 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+A+ GE+V FY Y +KY D ++ +PA + ++ +R +A++A++ C+G Sbjct: 230 YPEATWPGEVVKDVAFYDYKSKYKD-GKVQLQIPADLDEDVQLTLRNMALEAFKATDCSG 288 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 + R D F+T +N++ INE N +PGFT SMYPKLW+ GL Y +LIT+LIELA ERH Sbjct: 289 LVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERHQDK 348 Query: 358 NALKTTM 364 K + Sbjct: 349 QKNKYKI 355 >UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAT5_9FIRM Length = 358 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 146/366 (39%), Positives = 226/366 (61%), Gaps = 19/366 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK VG+VFGGKS E++VSL SA N+++ I+K +FD+ ++GI +G++++ + Sbjct: 3 EKKNVGVVFGGKSGEYDVSLLSAYNVINGINKEKFDITMIGITLEGKFYIYKGDVEKIKT 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++ + + + +G + VD+IFP++HG GEDG +QG+ Sbjct: 63 NEWINDSKNLISD-------------FSLFDGDIINNVDIIFPVLHGQNGEDGRIQGLFE 109 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH-----NISFAEVES 176 + + P+VG +VLAS+ CMDKD+ KR+ R G+ + + + + + E Sbjct: 110 MMDKPYVGCEVLASSVCMDKDIAKRIFRSVGIPVVDDVLVFNTDIETDKLLEATLDRCEE 169 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L P+FVKP N GSSVG+SK + A+ A +FD K++VE+GI REIE AVLGN Sbjct: 170 NLPYPMFVKPVNMGSSVGISKAKDRDSLKEALLKAVKFDTKILVEKGINAREIEVAVLGN 229 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 +P+AS GEIV +FY Y+ KY+ DG+++ +PA I +I +KIR AV+A++ +G + Sbjct: 230 SHPEASYPGEIVSCKEFYDYEAKYLSGDGSRIDIPAKIDDKIIEKIRTYAVKAFKAVGGS 289 Query: 297 GMARVDVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G++RVD FL +++ + +NE NTLPGFTNISMY K+W G+GY+DLI +LI+L ER+ Sbjct: 290 GLSRVDFFLDKDSKDIYLNEANTLPGFTNISMYAKMWDYMGIGYSDLIEKLIDLGFERYE 349 Query: 356 ADNALK 361 + L Sbjct: 350 IKHRLT 355 >UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli RepID=DDL_LISW6 Length = 370 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 153/368 (41%), Positives = 228/368 (61%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLTGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + A K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATNTVKLAATESEKSEGEAISPAVLEADDQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN---ISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + + N +E+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVSEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++++ A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKKELEDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLTS---DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY Y KY D + A +++P + PEI ++++ AVQA+ L + Sbjct: 242 VCSVPGEILPEGAVATFYDYKAKYQDNNTA-LIIPTEVDPEILEQMKEYAVQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y+ LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTDDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYSALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycetales RepID=DDL_MYCUA Length = 373 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 156/364 (42%), Positives = 230/364 (63%), Gaps = 16/364 (4%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 E+LRV +VFGG+S EH +S SA +I+ +D RF+V+ +GI QG W ++D + L Sbjct: 9 ERLRVAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAI 68 Query: 62 DDPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 D + + + +P + + G+ L +VDV+FP++HG GEDG++Q Sbjct: 69 TDRRLPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQ 128 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L +A +P+VG+ VLASAA MDK+ TK+L AGL I P L R +R ++ E+ + Sbjct: 129 GLLELAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVL-RPSRQSLDREEL-QR 186 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-- 235 LGLP +VKPA GSS+GVS+V+S ++ A+ A D KVIVE I GRE+EC VL Sbjct: 187 LGLPAYVKPARGGSSIGVSRVSSFDELPAAIAAARRHDPKVIVEAAINGRELECGVLEFP 246 Query: 236 NDNPQASTCGEIVL------TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 + +AST GEI + FY ++TKY+D D A++ VPA + ++ D +R +A++A Sbjct: 247 DGRLEASTLGEIRVAGVRGREDGFYDFETKYLD-DAAELDVPAKVEDDVADAVRQLAIRA 305 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 ++ + C G+ARVD FLT + VINE+NT+PGFT ISMYP++W ASG+ Y L+ ++E Sbjct: 306 FEAIDCQGLARVDFFLTDDG-PVINELNTMPGFTTISMYPRMWVASGVDYPTLLATMVET 364 Query: 350 ALER 353 AL R Sbjct: 365 ALSR 368 >UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacillales RepID=DDL_LACRD Length = 378 Score = 393 bits (1009), Expect = e-108, Method: Composition-based stats. Identities = 144/366 (39%), Positives = 225/366 (61%), Gaps = 9/366 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL + ++FGG S+EH+VS +SA NI DA+DK ++DV L K G ++ S + + Sbjct: 3 QKLHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDG 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + P L +D FP++HG LGEDG++QG+ + Sbjct: 63 EPEDQVVAEAYQKMDMSSP------LAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFK 116 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + N P+VGS++ ASA DKD+TK+++ AG+ P++ +T N+ + S+ +E KLG Sbjct: 117 LLNKPYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNL 176 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQ 240 FVKPA QGSSVG+ +VT+ E+Y A+D AF++D+K++VEQGI +EIE ++LGN++P Sbjct: 177 TFVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPI 236 Query: 241 ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 AS G + + D FY Y+ K++D G +P + + D+I +A++AY+ LG GM Sbjct: 237 ASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGM 296 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 AR+D + N + E NTLPGFTNIS+YP++W+ SG+ Y+DLI RLI+L L+ ++ Sbjct: 297 ARIDFLVDSNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQLGLQEFERNS 356 Query: 359 ALKTTM 364 +K Sbjct: 357 KIKYDF 362 >UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LDC1_GORB4 Length = 358 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 141/361 (39%), Positives = 212/361 (58%), Gaps = 12/361 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 LR+ ++FGG SAEH+VS +A +++ A D+ ++++V +GI K G W +D + L Sbjct: 6 LRLVVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIAALTDGT 65 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P AL + T + + H V+ P++HG GEDG++QGML + Sbjct: 66 PLPDALDVAGTVVDPLTELAAHAADTPT---------VVLPLLHGPHGEDGTIQGMLELF 116 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA-NRHNISFAEVESKLGLPL 182 LP+VG+ VL+SA CMDK + K + AG+ ++ + N A+ +LGLP+ Sbjct: 117 KLPYVGAGVLSSALCMDKAMAKVVAAQAGIPQCRWLEFRDGVDDPNTIVADAVGQLGLPI 176 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 FVKPAN GSSVG++K E + A+++A +D+ VI+E+ + GRE+E AVLG+ P+ S Sbjct: 177 FVKPANLGSSVGITKAHDEAELDTAINVALRYDNVVILEEAVTGREVEVAVLGDTAPETS 236 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GEI S+FY Y+ KYI AK+V+PA ++ E ++R +A + + + C GMARVD Sbjct: 237 VPGEIEPGSEFYDYEDKYI-TGAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVD 295 Query: 303 VFLTPENEVV-INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 F +NE+NT+PGFT SMYPKLW+A+G+ Y DLI +L+ AL H Sbjct: 296 FFYEESGRGWLLNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLVTFALGVHRRRVGFS 355 Query: 362 T 362 T Sbjct: 356 T 356 >UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces RepID=D1XE41_9ACTO Length = 401 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 143/367 (38%), Positives = 213/367 (58%), Gaps = 18/367 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV +VFGG+S+EH +S+ +A ++ A+D++++DV+ +GI + G+W ++ + Sbjct: 32 KPRVAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRWALTADDPARMAIS 91 Query: 63 DPAHIALR------PSATSLAQVPGKHEHQLIDA-QNGQPLPTVDVIFPIVHGTLGEDGS 115 D + A +L+ PG + + + L VDV+FP++HG GEDG+ Sbjct: 92 DRQVPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLHGPYGEDGT 151 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS----- 170 LQG L ++ +P+VG+ VLASA DK+ KR+ GL + P+ + + Sbjct: 152 LQGFLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWESDRPAARK 211 Query: 171 -FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 E ++ G PLFVKPA GSS+G++KV A++ A D K +VE ++GREI Sbjct: 212 RIMEFAAEHGWPLFVKPARGGSSMGITKVDDPSGLDEAIEEARRHDPKFLVESLLRGREI 271 Query: 230 ECAVLG-NDNPQASTCGEI--VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 EC VL D P+AS EI V DFY ++ KYID A +VPA + E ++R +A Sbjct: 272 ECGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYID--SAAGLVPAPLTEEQTAEVRRLA 329 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 V A++ C G+ R D FLT + VINEINT+PGFT ISMYP++WQ SG+ Y +L+ RL Sbjct: 330 VDAFEAASCEGLVRADFFLTEDGTFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRL 389 Query: 347 IELALER 353 I+ AL R Sbjct: 390 IQAALNR 396 >UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcales RepID=DDL_THEEB Length = 343 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 162/366 (44%), Positives = 230/366 (62%), Gaps = 34/366 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASN 56 M +LRVG++FGG+S EHEVS+ SA I A + R++V+ + I+K G+W ++ Sbjct: 1 MGRLRVGLLFGGRSREHEVSVVSAAAIAQAFAAGDNGDRYEVIPIYIEKDGRWRHTERVG 60 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 +P + Q + T+DV FPIVHG GEDG++ Sbjct: 61 ----------------------IPEGTAPESSLWQFPAVVDTIDVWFPIVHGPNGEDGTI 98 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN------RHNIS 170 QG+L + P+VGS V ASA MDK + K + GL P++ L R++ R+N Sbjct: 99 QGLLELMQRPYVGSGVAASAIGMDKILMKTVFGAIGLPQVPYVALQRSDLWSDPCRYNHL 158 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 +E++LG P FVKPAN GSSVG+SK + +Q A+++A E D ++IVE G+ RE+E Sbjct: 159 CDRIETELGYPCFVKPANLGSSVGISKAKNRQQLTTALEVAAELDRRIIVEAGVVARELE 218 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 CAVLGND PQAS GEI +S+FY Y+TKY D A++ +PA I P ++++IR++++QA+ Sbjct: 219 CAVLGNDKPQASVVGEITYSSEFYDYETKYTD-GRAQLHIPAEIPPAVSEQIRSLSLQAF 277 Query: 291 QTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 Q LG AG+AR D F P EV+INE+NTLPGFT +SMYP+LW ASGL + +L+ RL++L Sbjct: 278 QALGAAGLARFDFFYVPSTGEVLINEVNTLPGFTALSMYPQLWAASGLSFPELVHRLVQL 337 Query: 350 ALERHA 355 ALE HA Sbjct: 338 ALEWHA 343 >UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema RepID=DDL_TREDE Length = 368 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 217/368 (58%), Gaps = 11/368 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHV--SDASNYLLNA 61 + + I++GGKS+EHEVSLQSA +I+ IDK + + L+GI K G W++ + ++ Sbjct: 1 MNIAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKN 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + A + +PG + + A G D +F ++HG GEDG++QG+ Sbjct: 60 EKAVLKIKKDEAKRVTVIPGGGAKKGLKA--GDEFLPTDAVFAVLHGRFGEDGTIQGLFE 117 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS-----FAEVES 176 +A+LP+VG DV++++ MDK+ TK + +GL I P+I + R + + A E Sbjct: 118 MADLPYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKAILARAEK 177 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L PLF+KP GSSVG V + + + +F +D+K++VE I+ RE+EC+V GN Sbjct: 178 DLEYPLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWDNKILVEACIEAREVECSVTGN 237 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A GEI+ T FY Y+ KY D +GA++ +PA + IR A++AY+ L + Sbjct: 238 TKTVAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLS 297 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G++RVD F+ ++ +NE+NT+PGFT ISM+PK+ ASGL Y +LI LIELA++R Sbjct: 298 GLSRVDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMHLIELAIDRFK 357 Query: 356 ADNALKTT 363 D LKT Sbjct: 358 TDRKLKTC 365 >UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=D1BDJ8_SANKS Length = 400 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 152/362 (41%), Positives = 219/362 (60%), Gaps = 11/362 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV ++FGG+S EH +S +A ++ AID+ R+DVV +GI + GQW + + Sbjct: 34 RPRVVLLFGGRSGEHVISCATAAGVMRAIDRDRYDVVPVGITRTGQWVLVEDDPDRWAIT 93 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNG---QPLPTVDVIFPIVHGTLGEDGSLQGM 119 D + + T + + L + G + L VDV+FP++HG GEDG+LQGM Sbjct: 94 DGRLPEVDATGTEVLLPLAVGQTALRVLEAGALPRVLGDVDVVFPLLHGPFGEDGTLQGM 153 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA--NRHNISFAEVESK 177 L +A++ +VG+ VLASA MDK K +L GL + P+ + +R + + Sbjct: 154 LELADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVVPPGEWDRDAEAVTARVAG 213 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN- 236 LGLP+FVKPA GSS+G+SKV AV A D KVIVE GI GREIECAVLG Sbjct: 214 LGLPVFVKPARAGSSLGISKVDDLADLPAAVAEARRHDPKVIVEAGIVGREIECAVLGGR 273 Query: 237 --DNPQASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 + +AS GEI +T FY ++ KY+ E ++ PA ++PE+ +++ +AV+ ++ Sbjct: 274 RGERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELTCPADLSPELVAEVQDVAVRTFE 333 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + G++RVDVF+T EVV+NEINT+PGFT SMYP++W SGL Y +LIT L+ELAL Sbjct: 334 AVSGEGLSRVDVFVTEAGEVVVNEINTMPGFTPFSMYPRMWDRSGLPYAELITELVELAL 393 Query: 352 ER 353 ER Sbjct: 394 ER 395 >UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=DDL_SOLUE Length = 325 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 152/357 (42%), Positives = 225/357 (63%), Gaps = 40/357 (11%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KLRV +++GG++ EHEVS++SAK+I+ +D +++ + ID+ G+W Sbjct: 2 KLRVAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKW------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 S + PG H + +DV+FP++HGT GEDG++QG+L + Sbjct: 49 ---------SPGPILPEPGAHAN-------------IDVVFPVLHGTFGEDGTVQGLLEL 86 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A+LP+VG+ VL SA MDK++ KR+ ++ L I ++T+TR S + +L P+ Sbjct: 87 ADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIVDYVTVTR---QTPSIVDACRRLPFPM 143 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 FVKPAN GSSVG+SK E++ A LA ++D K+IVE+GI+GRE+EC+VLGN+ P AS Sbjct: 144 FVKPANLGSSVGISKAHDEQELEAAFSLAKQYDRKIIVERGIEGRELECSVLGNEAPMAS 203 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ + +FY Y+ KY+ D A+ VPA + E D+IR +AV+ Y+ + C GMARVD Sbjct: 204 LPCEILPSREFYDYEDKYL-LDMARTQVPADLPGERTDEIRRLAVECYRAVECEGMARVD 262 Query: 303 VFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 FL N + INEINT+PGFT+ISMYPK+W+ SG+ + L+ +LIE AL+RH Sbjct: 263 FFLEHGTNRLYINEINTIPGFTSISMYPKMWEHSGIPFCTLLDQLIEFALDRHRQKQ 319 >UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria RepID=DDL_CHLT3 Length = 366 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 153/366 (41%), Positives = 225/366 (61%), Gaps = 6/366 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K +V ++FGG+S+EHE+S+ SA++I +A+DK+++ + + I K G+W ++AS +L Sbjct: 1 MNKKKVALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILA 60 Query: 61 ADDPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D + I + L + Q + +DV FP++HG GEDG++QG+ Sbjct: 61 MDFESAIKSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGPYGEDGTVQGL 120 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN---ISFAEVES 176 L + ++ +VGS VLASA MDK V K AGL + ++ R A E Sbjct: 121 LEMFDVAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEENRGSVVARAEK 180 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 KL P+FVKPAN GSSVG+SK + + A++LA +D K ++E+ I RE+E AVLGN Sbjct: 181 KLRYPMFVKPANMGSSVGISKAHNRNELIEAIELALAYDRKFLIEKAINAREMEVAVLGN 240 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D P AS GE+V ++FY YD KY+ + ++V++PA I+ K++A A+ A+ C Sbjct: 241 DEPIASAVGEVVPCNEFYDYDAKYV-KGSSEVIIPAQISEAFAGKLKAAALNAFVAADCE 299 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 GMARVD + E NE+ INEIN++PGFT+ISMYPKL+ G+ YT+LI RLIELALER++ Sbjct: 300 GMARVDFLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELINRLIELALERYS 359 Query: 356 ADNALK 361 K Sbjct: 360 ERKLRK 365 >UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycetales RepID=DDL_STRGG Length = 391 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 147/367 (40%), Positives = 215/367 (58%), Gaps = 18/367 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV +VFGG+S+EH +S+ +A ++ AID++ +DV+ +GI G+W ++ + Sbjct: 22 KPRVAVVFGGRSSEHGISVVTAGAVMRAIDRTTYDVLPIGITTDGRWALTADEPERMAIT 81 Query: 63 DPAHIALR------PSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGS 115 D + + L+ PG E + + + L VDV+FP++HG GEDG+ Sbjct: 82 DRKVPDVDRLTESAEGSVVLSVDPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGT 141 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA--- 172 LQG+L ++ +P+VG+ VLASA DK+ KR+ GL + P+ + N A Sbjct: 142 LQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYEVVRPREWDNDPAAARE 201 Query: 173 ---EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 + + G PLF+KPA GSS+G++KV S E A++ A D K +VE ++GREI Sbjct: 202 RIVDFAGEHGWPLFIKPARGGSSMGITKVDSVEGLDAAIEEARRHDPKFLVESLLRGREI 261 Query: 230 ECAVLG-NDNPQASTCGEI--VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 EC VL D P+AS EI V + DFY ++ KYID A +VPA + E ++R +A Sbjct: 262 ECGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYID--SAAGLVPAPLTEEQTAEVRRLA 319 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 V A+ + C G+ R D FLT + VINEINTLPGFT ISMYP++WQ SG+ Y +L+ RL Sbjct: 320 VAAFDAVSCEGLVRADFFLTEDGTFVINEINTLPGFTPISMYPRMWQESGVDYPELVDRL 379 Query: 347 IELALER 353 I+ AL R Sbjct: 380 IQAALSR 386 >UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) n=1 Tax=Rickettsiella grylli RepID=A8PM76_9COXI Length = 365 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 226/370 (61%), Gaps = 20/370 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V +++GG SAEHE+SL SA ++ +D+ +F ++ +GIDKQG+ V+ + Sbjct: 8 KTKVAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQSLYSGDT 67 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 S + LA++ + DV+FP++HG LGEDG++QG+L + Sbjct: 68 ILLETENAQSFSGLAELMVDKKGH------------YDVVFPVLHGALGEDGTIQGLLDL 115 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLG 179 ++ ++G+DVL SA MDK V+KRL A + + PF+ + ++ ++ ++G Sbjct: 116 MDIAYIGADVLGSAVGMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQEIG 175 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-- 237 PLF+KP N GSS+G++K+ + A++L F + KV+VE+ ++ RE+E AVL N Sbjct: 176 YPLFIKPVNGGSSLGITKIKKDTDLENAIELVFTYSTKVLVEKALEVREVEIAVLENQKW 235 Query: 238 --NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 P S GEI+ +FY+Y+ KY+DE GA++++PA++ +I+ +A++ + L C Sbjct: 236 GAEPYVSQIGEIIPRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDC 295 Query: 296 AGMARVDVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +GMAR+D F+ ++ + NE+NT+PGFT ISMYP+LW+ SG+ YT L+T LIELAL RH Sbjct: 296 SGMARIDFFIEKRSQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELALTRH 355 Query: 355 AADNALKTTM 364 + LK + Sbjct: 356 QRLSLLKLSF 365 >UniRef50_A9N8L3 D-alanine--D-alanine ligase n=6 Tax=Coxiella burnetii RepID=DDL_COXBR Length = 372 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 153/360 (42%), Positives = 230/360 (63%), Gaps = 2/360 (0%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EKL + ++ GG+S EHE+S+QSAKNIV+ +D +++ + ++ I G+W++ D L A Sbjct: 3 EKLHISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIVHVGRWYLIDQPEMFL-A 61 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 P H+ SA + G + D +FP+VHGT GEDG+LQG+L Sbjct: 62 HSPDHLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLE 121 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL- 180 + NLP+VG++V +SA CM+KD+TK +LR G+ + + TL+ + + + + G Sbjct: 122 LLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTS 181 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 LFVK + GSSV V +E ++ AV F +D +++VE I+GREIECAVLGN P+ Sbjct: 182 ELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIRGREIECAVLGNGAPK 241 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS GEI+ D+Y+YD KY+D +GA ++ + +I+ IA+ A++ + C+GMAR Sbjct: 242 ASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMAR 301 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VD F+TP N+V++NEINT+PGFTNISMYPK+W+ASGL +L+ +LIELA++RH L Sbjct: 302 VDFFVTPNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELAIDRHQEQQKL 361 >UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacteria (class) RepID=DDL_KINRD Length = 376 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 146/366 (39%), Positives = 212/366 (57%), Gaps = 15/366 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHV-SDASNYLLNA 61 K RV +VFGG+S+EH +S +A ++ A+D +DVV +GI G+W + D + + L Sbjct: 6 KPRVAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTD 65 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP----LPTVDVIFPIVHGTLGEDGSLQ 117 + + L Q + G P L VDV+ P++HG GEDG+LQ Sbjct: 66 GALPEVPATGTPVGLPLDVDTKALQRLGGAPGAPALAELGEVDVVLPLLHGPFGEDGTLQ 125 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL--TRANRHNISFAEVE 175 G+L +++ +VGS VLASAA MDK V K LL GL + P+ + R + Sbjct: 126 GLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSFRARRWDTDRDGVVAEV 185 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 LG P+FVKPA GSS+G+++VTS E A AV A D KV+VE + GREIEC VL Sbjct: 186 EALGYPVFVKPARAGSSIGITRVTSREGLAAAVAEAVSHDPKVVVEAALVGREIECGVLE 245 Query: 236 N---DNPQASTCG--EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 + P S G E+V DFY ++ KY+D ++ PA + ++ +R AV+ + Sbjct: 246 DLDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCPADLPDDVVAAVRRTAVRVF 305 Query: 291 QTLGCAGMARVDVFLTP---ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 + +G G+ARVD+F+ P E+ +V+NEINT+PGFT SMYP++W A+G+ Y +L+ RLI Sbjct: 306 EAMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRLI 365 Query: 348 ELALER 353 +LAL R Sbjct: 366 QLALRR 371 >UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD66_9FIRM Length = 364 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 144/356 (40%), Positives = 206/356 (57%), Gaps = 6/356 (1%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 K+ V ++FGG S+EHEVS S N V ID+S+++V+ +GI K+G+W ++A+ + Sbjct: 5 NKMCVALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMAD 64 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + ++ H L +DV+ P++HG GEDG++QG+L Sbjct: 65 GSWEELPGNMPCV-ISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLE 123 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKL 178 +A + +VG VLAS+ CMDK V L G+ ++ R A VE KL Sbjct: 124 LAGIAYVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKL 183 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P+FVKPAN GSSVG+SKV+++E+ A+ LA E D KV+ E + G+E+ECAV+G+D Sbjct: 184 GWPVFVKPANAGSSVGISKVSNQEELKAAIALALENDRKVVFEAFVDGQEVECAVIGSDP 243 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A+ GEI+ ++FY YD KY ++ V+PA + D+++ A AY L C G+ Sbjct: 244 AVATRPGEILAGAEFYTYDDKY-KNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGL 302 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 AR D F+ V+INEINT PGFT ISMYPKL + GL LI RLI LA+ER Sbjct: 303 ARCDFFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALAVER 358 >UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M645_SALAI Length = 360 Score = 386 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 145/355 (40%), Positives = 213/355 (60%), Gaps = 13/355 (3%) Query: 7 GIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD--- 63 +VFGG+S EH +S SA +++ A+D ++VV +GI + GQW ++ + L D Sbjct: 2 AVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGGDSSQLAITDRRL 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 P A +A L P ++D G + L VDV+FP++HG GEDG++QGML + Sbjct: 62 PEVTAESGTAVVLNADPSSGGLLVLDPAEGSRALADVDVVFPVLHGAYGEDGTIQGMLEM 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A +P+VG++V ASAA MDK+ TK+L G+ + P+ L + + +LGLP+ Sbjct: 122 AGIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRSGMTLT---EQDKQRLGLPV 178 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL---GNDNP 239 FVKP+ GSS G+++VT AV A + D KV+VE + GREIEC VL P Sbjct: 179 FVKPSRAGSSFGITRVTDWADLDDAVANARKIDPKVLVESAVIGREIECGVLEAEAGGVP 238 Query: 240 QASTCGEIVLTSD--FYAYDTKYIDEDGA-KVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 +AS E+ + D FY ++ KYID D A + +PA + + +++ AV+A+ L CA Sbjct: 239 EASALAEVRVVGDYDFYDFEAKYIDADAACEYDIPADLPERVTRQVQEYAVRAFTALDCA 298 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+AR D F+TPE +V +NE+NT+PGFT SM+P++W ASGL Y L+ RLI AL Sbjct: 299 GLARADFFVTPELDVYLNEVNTMPGFTPTSMFPRMWAASGLEYQKLVNRLIRTAL 353 >UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0Y9_9ZZZZ Length = 356 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 141/357 (39%), Positives = 216/357 (60%), Gaps = 9/357 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++FGG S+EH++S SA +I+ ++K ++++ +GI + G+W + + + Sbjct: 1 MKLAVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWFYC--PDCDPDRVE 58 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + P + H ++ + G+ + +D +FP++HG GEDG++QG+L + Sbjct: 59 SGAWERMTGKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQGLLEL 118 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN---ISFAEVESKLG 179 A +P+VG V ASA MDK +TK+++ G+ A + R + A LG Sbjct: 119 AGIPYVGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAAETLG 178 Query: 180 -LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+FVKP +QGSSVGV+K + + A + A + D KV+VE+ I G E+ECAVLGN Sbjct: 179 AFPVFVKPCSQGSSVGVAKANNLLELAEGLTEALKLDTKVLVEEFIDGHEVECAVLGNLE 238 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 PQAST GEI T +FY +D KY DE +++ +PA I E +R AV+ Y LGC G+ Sbjct: 239 PQASTVGEIAPTQEFYTFDAKYKDES-SRLYIPAHITEEQLATVRQDAVRVYTALGCRGL 297 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +RVD F+T + EVV NE+N +PGFT+ISMYPKL+ G+GY +L+ RLI LALE H Sbjct: 298 SRVDFFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELLDRLISLALEEH 354 >UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R6P1_9CHLA Length = 788 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 135/360 (37%), Positives = 197/360 (54%), Gaps = 29/360 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KL +GI++GGKS EHEVSL S++ I ++D+ ++ I K+G+W + + Sbjct: 452 KLHIGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKN--------- 502 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 G E LI +Q Q L D++FPI+HGT GEDG++QG L + Sbjct: 503 -----------------EGDSEEFLISSQVLQQLQKCDLLFPILHGTFGEDGTIQGFLEI 545 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESKLG 179 P+VG D +SA CMDK + KRL++ AG+ + FI + + N + E+ KL Sbjct: 546 LGKPYVGCDHQSSAICMDKAIAKRLMQHAGIQTSSFIAFSETDWKNRAKDLLHEIREKLI 605 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKP + GSS+GV +VT+E + A+ AF FD ++VE I GREIE AVLGND Sbjct: 606 FPIFVKPVHLGSSIGVQRVTNETELDAAIRNAFAFDPVILVENEIAGREIEFAVLGNDQI 665 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 GE+ + Y KY ++ A + + ++ +AIA++AYQ C GMA Sbjct: 666 TVLPPGEVFSAGKIHDYRGKYSRDNATPSTPQADLPEKWMEEGKAIALKAYQAATCKGMA 725 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 R+D FL NEIN +PGFT S+YP++ +A+G +LI RL+ L L+R Sbjct: 726 RIDFFLDQSGSFWFNEINPIPGFTPFSLYPQMCEANGFSNEELIDRLLILGLQRSRQKEK 785 >UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci RepID=DDL_DEIGD Length = 339 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 147/357 (41%), Positives = 213/357 (59%), Gaps = 24/357 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K R+ ++ GG+S EHEVSL+SA++++ A+ + +FDV + I QG+W + L Sbjct: 2 KKRILLLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALETG 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + D +FP++HG +GEDG++QG+L + Sbjct: 62 EAVR------------------GGDLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN--ISFAEVESKLGL 180 A +PFVGS VL SA MDK +TK++L G+ + R +LG Sbjct: 104 AGIPFVGSGVLGSAVSMDKVMTKQVLASVGMPQVAWRLAVRREWQERPQEVRARAGELGY 163 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ--GIKGREIECAVLGNDN 238 PLFVKPAN GSSVG+SKV+ + A+DLAF +VI+E K RE+E +LGND Sbjct: 164 PLFVKPANLGSSVGISKVSGPGELERALDLAFSLGRRVILEAMTAHKPRELEVGILGNDA 223 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P AS GE+ +DFY Y+TKY E A + +PA + PEI +++R +A+ A++TL CAG+ Sbjct: 224 PIASPVGELRFEADFYDYETKYT-EGRATMHIPAPLPPEIAERVRMLALTAFRTLDCAGL 282 Query: 299 ARVDVF-LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 ARVD F + E+ +NE+NT+PGFT SMYPKL++A+GL Y++L+TRL+ELALER Sbjct: 283 ARVDFFYVEQTGELFLNEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALERR 339 >UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN Length = 350 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 137/353 (38%), Positives = 205/353 (58%), Gaps = 6/353 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+KL V I+FGG S+E+EVSL+S ++++++ +++V+LLGI ++GQW + + Sbjct: 1 MKKLTVAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITREGQWLRYTGNIESIR 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP-LPTVDVIFPIVHGTLGEDGSLQGM 119 D P + ++ +NG + VDV+FPI+HG GEDG++QG+ Sbjct: 61 NDSWHQ---SEKCVPAFLSPCRQVRGIVTQENGAMTVTKVDVVFPILHGKNGEDGTVQGL 117 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +A +PFVG L+SA CMDKD+ L +G+ + + N + LG Sbjct: 118 LELAGIPFVGCHTLSSAICMDKDIAHTLAEGSGIKTPRSVAVYP-NTDLATVQAATEPLG 176 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 PL+VKPA GSS+G++K S + ++ A + D KV++E+ I G E+ CAVLGN Sbjct: 177 FPLYVKPAKAGSSIGITKAYSLSELFFGIENALQHDDKVVIEENITGFEVGCAVLGNREV 236 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EI L F+ Y KY E A + VPA I E+ KI+ A YQ GC G A Sbjct: 237 IVGEVDEIELLQGFFDYTEKYSLE-TAHIHVPARIDEELAHKIKQTATHLYQVFGCRGFA 295 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVD+F+TP+ ++V NE+NT+PGFT+ S YP + +A+G+ Y +L+ LI LALE Sbjct: 296 RVDMFVTPDGDIVFNEVNTIPGFTSKSRYPSMLRAAGISYKELLDTLIMLALE 348 >UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID=C7H403_9FIRM Length = 365 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 147/358 (41%), Positives = 213/358 (59%), Gaps = 10/358 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL V ++FGG S+EHEVS SA VD +D++R++V+ +GI ++G+W ++A++ + Sbjct: 6 DKLCVVVLFGGMSSEHEVSRVSAGTFVDNLDRARYEVLTVGITREGRWLCTEATSAQMAD 65 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT--VDVIFPIVHGTLGEDGSLQGM 119 + P P + +H +I + VDV+ P +HG GEDG++QG+ Sbjct: 66 GSWEEL---PGNMPCVISPDRADHGMILFTPSGQVEKLHVDVVIPALHGLWGEDGTVQGL 122 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVES 176 L +A +P+VG VLASA CMDK V L AG+ +++ R + + Sbjct: 123 LELAGIPYVGCGVLASAVCMDKAVANALFDAAGIPHTKWLSACRWEIESDLDGVCDGAIA 182 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 KLG P+FVKPAN GSSVG++K ++ A+ LA E DHKV+ E + G E+ECAV+G+ Sbjct: 183 KLGWPIFVKPANAGSSVGITKAHDRDELKQAIALALENDHKVVFEAFVDGHEVECAVIGS 242 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D A+ GEI+ ++FY YD KY ++VV+PA ++ E D+++ A AY L C Sbjct: 243 DPAVATRPGEILAGAEFYTYDDKY-KNGVSQVVIPARLSEEKLDEVKTYAAMAYTALNCE 301 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR D F+ + V+INEINT PGFT ISMYPKL + G LI LIELALER Sbjct: 302 GLARCDFFVEHGTDRVMINEINTFPGFTPISMYPKLMEHEGTPVPALIDHLIELALER 359 >UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FAD8 Length = 371 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 141/360 (39%), Positives = 204/360 (56%), Gaps = 9/360 (2%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 V ++FGG+S+EH VS +A ++ AI + V+ +GI K G W + + + + D Sbjct: 10 VAVLFGGRSSEHAVSCVTAAGVIRAIADDAYRVLPIGITKAGVWRIVEDWSTMAFDPDNM 69 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQ--PLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + + + L G L +VDV FP++HG GEDG+LQG+ ++ Sbjct: 70 PEVVDNGTEIIPPISAQGSPLLQRDAEGNYSELGSVDVYFPLLHGQYGEDGTLQGLFELS 129 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR--ANRHNISFAEVESKLGLP 181 + FVGS V ASAA MDK TK L+ AG+ P+ +T + + LGLP Sbjct: 130 DTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWELVTETMWEADQAEAQDRITGLGLP 189 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG---NDN 238 +FVKPA GSS+GVS+V S E A+ AFE D KVIVE + GREIECAVLG + Sbjct: 190 VFVKPARAGSSMGVSRVESAEGLDQALRSAFEHDSKVIVEPQVVGREIECAVLGSVHDRE 249 Query: 239 PQASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 + S GEI ++ + FY ++ KY++ A++ PA + +I+ ++ Q ++ C Sbjct: 250 VRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLTCPARVDETTTARIQELSAQVFRLFDCT 309 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G++RVD F+T EV+INEINTLPGFT S YP +W SG+ Y LI+ LI +AL HA Sbjct: 310 GLSRVDTFVTDAGEVLINEINTLPGFTPTSAYPFMWSKSGIEYPALISELITIALVDHAR 369 >UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M114_BACS4 Length = 326 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 162/326 (49%), Positives = 232/326 (71%), Gaps = 1/326 (0%) Query: 39 VLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT 98 VL+GIDK G+W++ D +NYL N D+P I + PS + V G+H+ +G+ L Sbjct: 2 VLIGIDKNGKWYLLDPNNYLRNMDNPKLIEMIPSDQRVNIVLGEHD-CFFTTPDGRSLGN 60 Query: 99 VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF 158 +DVIFPI+HG+ GEDGS+QG+LR+ PF+G VL SA MDK+V+K+LL +AGL I + Sbjct: 61 IDVIFPILHGSYGEDGSIQGLLRLMGKPFIGPSVLGSAVSMDKEVSKKLLSEAGLFIGKY 120 Query: 159 ITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV 218 T+ + NI + +V+ LG P+FVKPANQGSSVG+SKV ++++ +AVD AF +D+K+ Sbjct: 121 FAYTKDRKGNIDYEKVKENLGTPVFVKPANQGSSVGISKVYEKKKFYMAVDEAFRYDNKI 180 Query: 219 IVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEI 278 ++E+ IKGREIECAVLGN++P AS GE++ T FY+YD KYI+ G ++ VPA + + Sbjct: 181 VIEEEIKGREIECAVLGNEDPIASLPGEVLFTDSFYSYDAKYINSGGVQLKVPAELDGDD 240 Query: 279 NDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLG 338 +K++ A++A++ L C G+ARVD FLT E + +NEINTLPGFT +SMYPKLW+ SGL Sbjct: 241 VEKVKKEAIKAFKALQCNGVARVDFFLTKEGNLFVNEINTLPGFTKLSMYPKLWEVSGLP 300 Query: 339 YTDLITRLIELALERHAADNALKTTM 364 Y DL+ ++I LA+E H + LK + Sbjct: 301 YKDLVNKMIALAIESHKQEQRLKKNL 326 >UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria RepID=DDL_BIFLI Length = 395 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 150/395 (37%), Positives = 220/395 (55%), Gaps = 43/395 (10%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS--DASNYL 58 M K RV +++GG++ EH +S S ++ A+D RF+ + +GI K G+W ++ D + Sbjct: 1 MAKKRVVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDPRGWN 60 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ------------------------ 94 L+ + + + P + + P + + + Sbjct: 61 LDGGELPTVKITPESRPVMLDPSRGQDGFFIGEPSHINSADSGFGTSFVSMPDPEMHHAL 120 Query: 95 -PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL 153 L VD + P++HG GEDG++QG+L + +P+VG V ASAACMDK TK +L AG+ Sbjct: 121 TSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLGAAGI 180 Query: 154 NIAPFITLTRANRHNIS--FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ-------Y 204 AP +T+ N ++ L PLF+KP+ GSS GV+KV + Sbjct: 181 PTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADDRETQQDRL 240 Query: 205 AIAVDLAFEFDHKVIVEQGIKGREIECAVL---GNDNPQASTCGEIVLT----SDFYAYD 257 A A+ A E D KV+VEQGI GREIECAVL D P+AS GEIVL FY +D Sbjct: 241 AAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFD 300 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 +KY+D + V VPA + + + +R +A +A++ + AG++RVD F+TP+ V++NEIN Sbjct: 301 SKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTPDGTVMVNEIN 360 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 T+PGFT ISMYPK W A+G+ YT+LITRLIE L Sbjct: 361 TMPGFTPISMYPKAWDATGVSYTELITRLIEGVLR 395 >UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiales RepID=A9KKE7_CLOPH Length = 353 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 133/356 (37%), Positives = 208/356 (58%), Gaps = 9/356 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + ++FGG+S+EHEVS SA +++ ID +D+VL+GI K+G+W ++ + + + Sbjct: 1 MDKKTIVVLFGGQSSEHEVSCVSAVTVINHIDLDHYDIVLVGITKEGKWLLTGSVEDITS 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + T++ LI N VDV+FP++HG GEDG++QG+L Sbjct: 61 G-----VWRDGKKTAILSPDRSKPSLLIMEDNKVEYQKVDVVFPVLHGLFGEDGTVQGLL 115 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF--ITLTRANRHNISFAEVESKL 178 +A +P+VG VLAS+ MDK TK ++ G+ A + + N +E+++ Sbjct: 116 ELAGVPYVGCGVLASSVSMDKLYTKIIVDSLGIRQAAYEPVYAKELEEMNKVVERIENRI 175 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F+KP+N GSS G++K + + + + A E D K++VE+ I GREIECAVLG Sbjct: 176 SYPVFIKPSNAGSSKGITKAHNRDDLIVGLKEAAEHDRKILVEETIVGREIECAVLGGME 235 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +AS GEI+ ++FY YD KY + D ++ P + +I AV+ ++ + + Sbjct: 236 AKASGVGEILAAAEFYDYDAKYNNADSKTIISP-ELPEGKAQEISDAAVKIFRAVDGYSL 294 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +RVD FL + NE+V NEINTLPGFT ISMYP LW+A G+ L+ +LI+ A R Sbjct: 295 SRVDFFLEKDTNEIVFNEINTLPGFTAISMYPMLWEAKGIAKPQLVEKLIQTAFTR 350 >UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetales RepID=C7QH14_CATAD Length = 394 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 149/385 (38%), Positives = 218/385 (56%), Gaps = 31/385 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAID----KSRFDVVLLGIDKQGQWHVSDAS-- 55 +++RV +VFGG+S+EH +S +A +++DA+ R+++V +GI G+W ++D Sbjct: 9 KRIRVAVVFGGRSSEHAISCVTAGSVLDALRNGPEPQRYEIVPIGIASDGRWVLADLPDG 68 Query: 56 ---NYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP------LPTVDVIFPIV 106 N + I L SA V + + +P L VDV+ P++ Sbjct: 69 GDLNLAITDGRLPEIGLPASAERANLVTMAGDPTARELTVHEPGAVPKSLGEVDVVLPLL 128 Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 HG GEDG+LQG+L +A +P+VGS VLASA MDK+ KRLL AG + P+ + + Sbjct: 129 HGPYGEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYEVVRPRDW 188 Query: 167 ----HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ 222 + +LG P+FVKPA GSS+G++KV + E+ A+D A D KV+VE Sbjct: 189 GTEEGRAAVRLAVEELGYPVFVKPARAGSSMGITKVDAPEELDQAIDAARRHDPKVLVEA 248 Query: 223 GIKGREIECAVLGNDNP----QASTCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAP 276 I+GREIEC VL P +AS E+ +T FY + KY+D +V +PA ++ Sbjct: 249 AIEGREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLD-GSTEVDIPARLSA 307 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NEVVINEINTLPGFTNISMYPKL 331 E + IR AV ++TLGC G+ARVD F ++NEINT+PGFT SM+P++ Sbjct: 308 EEIEDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFTPTSMFPQM 367 Query: 332 WQASGLGYTDLITRLIELALERHAA 356 WQA+GL Y +LI RLI+ AL R A Sbjct: 368 WQAAGLSYPELIARLIDTALLRPAG 392 >UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiaceae RepID=A8MKQ7_ALKOO Length = 349 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 117/354 (33%), Positives = 219/354 (61%), Gaps = 6/354 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K+ V ++FGG+S+E+EVSL+SA +++ +D ++DV+ +GI + G+W + + L+ Sbjct: 1 MGKIVVAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGT---LD 57 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPL-PTVDVIFPIVHGTLGEDGSLQGM 119 L S + P K + ++I+ + + +D++FP++HG GEDG+LQG+ Sbjct: 58 KIKENTWFLDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGL 117 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 + +P+VG DV AS+ C+DKD ++++ AG ++ I + + + + +G Sbjct: 118 FEITGIPYVGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAIDNRTKED-EINKFAENVG 176 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P++VKP+ +GSS+G++K + ++ A + D KV++E+ I+G E+ CA+LGND+ Sbjct: 177 YPIYVKPSREGSSIGITKAENHSDLMGGIEAALKLDGKVVLEENIEGFEVGCAILGNDDL 236 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 T EI + + F+ + KY ++ +K+ +PA I +++++I+ I Y+ LGC+G++ Sbjct: 237 IVGTVDEIEVPNGFFDFTEKYTLQN-SKIHLPARIDQDLSERIKEIGKGIYKALGCSGLS 295 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 RVD+F+ + +V NE+NTLPGFT S +P + +G+ Y D++ +LI+L ++R Sbjct: 296 RVDLFVDKNHRIVFNEVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLIDLGMQR 349 >UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDP6_ELUMP Length = 353 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 132/366 (36%), Positives = 213/366 (58%), Gaps = 18/366 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL + +V+GGKS EHEVS+ SA ++ + K +++V+ + I K+G W + Sbjct: 1 MGKLTIAVVYGGKSVEHEVSVHSAADVCGILSK-KYNVINIFISKEGLWFAQEKCGPAQP 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D + P + +G + + DV+FP++HGT GEDG +QG+ Sbjct: 60 SD-------------INVTPVFSNDCMFQTADGGTI-SADVLFPVLHGTKGEDGCIQGLF 105 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + P+VG V+ASA MDK+V+K L AG+ P+IT + + F +KLG Sbjct: 106 ELMETPYVGCGVMASAIGMDKEVSKVLAAYAGVPTLPYITFKKGDSVTKDFKAKTAKLGY 165 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECAVLG-NDN 238 P+FVKP N GSS+G++KV E A++ A +FD+ +++E+G+ +EI CAV G +N Sbjct: 166 PVFVKPVNLGSSIGITKVKEEAFLEKAIEFALKFDNDILIEKGVQSPKEIFCAVCGEGNN 225 Query: 239 PQASTCGEIVLTS-DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 ++S+CGE++ +F+ Y +KYID +G V VPA+++ E + ++ + ++ G Sbjct: 226 TESSSCGELIPNGHEFFDYHSKYIDPNGCTVKVPASVSEEEDKLMQKYSRMIFKVFKACG 285 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 ARVD L + ++ +EINTLPG +N S++P+LW+A+G Y D++ LI LAL+R Sbjct: 286 FARVDFLLGKDGQIYFSEINTLPGMSNASLFPQLWRAAGKKYEDVLDTLINLALKRREQI 345 Query: 358 NALKTT 363 LKT Sbjct: 346 KTLKTD 351 >UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacillus RepID=DDL_LACDA Length = 362 Score = 372 bits (956), Expect = e-102, Method: Composition-based stats. Identities = 162/367 (44%), Positives = 233/367 (63%), Gaps = 20/367 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K +VG++FGG S+E+EVS+ SA NI AIDK +FDV + I G +V+ ++ Sbjct: 3 KKTQVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSG--YVASEADSYKVL 60 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++P ++ + T+ L + P +DV+FPIVHG LGEDG LQG+ R Sbjct: 61 EEPGYMVEKNDKTA----------NLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFR 110 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN-----ISFAEVES 176 + + PFVG DVLA+A MDK+ TK L + AG+ +A ++++ R + +S+ V Sbjct: 111 LIDKPFVGVDVLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSG 170 Query: 177 KLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 +LG LFVKP+NQGSSVG++ VT + YA A+ AF++D KV+VE+GI G E+E AVLG Sbjct: 171 QLGTSNLFVKPSNQGSSVGITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLG 230 Query: 236 NDNPQASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 ND+P S G+I+ + +Y+Y+ KY E + +PA I E +K++ A++ YQ Sbjct: 231 NDHPVVSGVGQIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITE 290 Query: 295 CAGMARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C+GMARVD L + EV+ NE+N LPGFTNISMYPKL++ +G+ Y DLITRLI LA ER Sbjct: 291 CSGMARVDSMLRESDGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLAEER 350 Query: 354 HAADNAL 360 +A L Sbjct: 351 YAHKKTL 357 >UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCDC65 Length = 356 Score = 372 bits (956), Expect = e-102, Method: Composition-based stats. Identities = 149/360 (41%), Positives = 208/360 (57%), Gaps = 28/360 (7%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + R+ +VFGG+S+EH VS +A+ ++ A+D R+DV +GI G W A L Sbjct: 11 RPRLAVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAWVEETARWDDLAPG 70 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 +P + A + L D +FP++HG GEDG++QG+L + Sbjct: 71 T---------------LPAVRADGPVFA--WERLAEFDAVFPLLHGPWGEDGTVQGLLEM 113 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR--ANRHNISFAEVESKLGL 180 A++ +VG+ VLASA MDK TK + AGL P++T+ NR LGL Sbjct: 114 ADIRYVGAGVLASAVSMDKPFTKTVFSAAGLPQIPYVTIRPWEWNRERSRVEARIRALGL 173 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLG--ND 237 P+FVKPA GSS GV+ V S + AV A FD KVIVE +G RE+EC VL + Sbjct: 174 PVFVKPARAGSSSGVAMVESWDDLDAAVVAARAFDPKVIVEAFARGKRELECGVLQGPDG 233 Query: 238 NPQASTCGEIVL----TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P AS GEI + DFY ++ KY+D +V PA I ++++IR AVQA++ + Sbjct: 234 RPVASVVGEITVAAESDHDFYDFEAKYLDGTSVNLV-PADIPVTLSERIRTYAVQAFEAV 292 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 GC G+ARVD FLT + +V+NEINT+PGFT SM+P LW+ASG+ Y DL+ RL+ LAL+R Sbjct: 293 GCEGLARVDFFLTDDG-LVVNEINTMPGFTPFSMFPLLWEASGVRYEDLVDRLVRLALDR 351 >UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D443_PAESJ Length = 359 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 214/365 (58%), Gaps = 12/365 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + ++ +++GGKS EHEVSL++A ++ +I++SR++ + + ++G W Sbjct: 2 RTKLYVLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGP-----IA 56 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 R AT P + +++ P P V+ P++HG GEDG++QG+L + Sbjct: 57 KDELTIERLIATPTFPDPARSIGEILSGIMALPGPK--VVLPLLHGPNGEDGTVQGLLEL 114 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLG 179 N+P+VG+ VL++A +DK ++K++L AG+N + + E + Sbjct: 115 VNVPYVGNGVLSAALTLDKAMSKQVLAQAGINQTEYRVYRYEEWITDEESVLRKAEDSIE 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P +VKPA+ GSS+G+S+ T+ + + AF +D K+++E+ + GREI+ AV+GN+ P Sbjct: 175 YPCYVKPASLGSSIGISRCTNRGELLAGIREAFSYDKKLVIEREVSGREIQVAVIGNERP 234 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 AS GE + F+ Y++KY+D+ + +PA +A + +IR +AV+AYQ GC G+A Sbjct: 235 LASLPGEFIHDHIFFDYESKYMDKRLT-MQIPANLADGLTPRIRELAVRAYQAHGCEGLA 293 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA-SGLGYTDLITRLIELALERHAADN 358 RVD FL E ++ +NEIN LPGFTN SMYP +W+ +G Y++LI +LI A+ RH Sbjct: 294 RVDFFLDGEGQLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLIGHAIARHQNKQ 353 Query: 359 ALKTT 363 ++ T Sbjct: 354 TIQYT 358 >UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y930_9FIRM Length = 350 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 127/353 (35%), Positives = 200/353 (56%), Gaps = 10/353 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EKL V ++FGG S E+ VSL SA ++ A+D R+ VV +GID QG W ++ AS + A Sbjct: 3 EKLNVAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEA 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D + + +LA+ VDV FP++HG GEDG+LQGM Sbjct: 63 DQWHTASDQRLRLTLAR------RNFELKDETGEAVDVDVFFPVLHGRNGEDGTLQGMFE 116 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + ++PFVG + AS MDK ++ +L R G+ ++PF+ + E +L LP Sbjct: 117 LFHIPFVGCGMDASLLGMDKALSHQLARQNGIEVSPFVVFAYSEIDQK--RESLKRLHLP 174 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 FVKPA GSS+G++K+ + E+ A A + D ++++E+ + G EI C++L + Sbjct: 175 CFVKPARGGSSIGITKINTWEELDAACACAAKHDRRILIEEAVSGEEIGCSILETPDGLV 234 Query: 242 S-TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 I L SDF+ Y+ KY+D A+V PA + +++++R +A + ++ C G+ R Sbjct: 235 LGAVDRIHLNSDFFDYEEKYVD-THAEVECPAQLPDFVSEQMRRLARKLWEIHHCQGLVR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 VD FLTP+ ++ NEINTLPG T S YP++ +G+ + ++ LIE AL+R Sbjct: 294 VDCFLTPDQRILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEALQR 346 >UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella RepID=DDL_LEGPA Length = 364 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 141/375 (37%), Positives = 213/375 (56%), Gaps = 23/375 (6%) Query: 1 MEKL-RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M K + +++GGKS EHEVSL SA +++ +D ++ ++ + +DK G++H D ++ L Sbjct: 1 MSKPVNLVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLA 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D + + + + NG+ +++FP+VHG L EDG LQG+ Sbjct: 61 CSDKLPVVTEKSTPLEGLLI------------NGRLAVDAEIVFPVVHGPLYEDGCLQGL 108 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVES 176 L +A + +VG DVL+SA MDKD+ +RL GL A + L+ A+ EV S Sbjct: 109 LELAGVAYVGCDVLSSAIGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVAS 168 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 + G PLFVKP + GSSVG+ K + ++ AV A +D +++VE+ I GREIE AVL N Sbjct: 169 EFGWPLFVKPCSLGSSVGIHKANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLEN 228 Query: 237 ----DNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 P+ S GEI + +Y+Y KY++ +++PA + + ++++ A + Sbjct: 229 SIPCGKPRVSMVGEIKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIF 288 Query: 291 QTLGCAGMARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 L C GMARVD F+ E+ NEINTLPGFT+ISMYPKLWQA+G+ Y DL+ LI L Sbjct: 289 SYLKCKGMARVDFFVNDKTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLLDELINL 348 Query: 350 ALERHAADNALKTTM 364 A+ H L T Sbjct: 349 AMVHHNCRQHLVTNY 363 >UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0K0_9FIRM Length = 359 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 134/361 (37%), Positives = 203/361 (56%), Gaps = 22/361 (6%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK V ++FGG+S EHE+S SA I + + VV + IDK G WH D Sbjct: 7 EKKSVAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWHRVD-------- 58 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++ K+E + + Q L VD+++ ++HG GEDG +QG+ Sbjct: 59 ---------DGIIDFTKLDVKNEAESCTIE--QCLTDVDIVWSVLHGPYGEDGKIQGLFE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE--SKLG 179 + ++P+VG +V ASA MDK + K + AGL + L + E+E KLG Sbjct: 108 MYDVPYVGCNVTASAIAMDKVIAKNVFEHAGLKTVKYELLLEKEYRDDEERELERIEKLG 167 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T E++ A++ AF++D+++I+E+ I G+E+E AV GN Sbjct: 168 FPMFVKPANMGSSVGISKATDEKKLKKAIEDAFQYDYRLIIEENIIGKEVEVAVFGNGPY 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GEI ++FY D KY +++PA I+ E ++ A A + + C G+ Sbjct: 228 EASVAGEIRPRAEFYDVDAKYHSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGIC 287 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 RVD F+ + NE+ INE+NT+PGFT ISMYPKLW+ SG+ +L+ R+I E + + Sbjct: 288 RVDSFIKADSNEIFINEVNTMPGFTEISMYPKLWEVSGISNKELLERIINYGYETYKGKS 347 Query: 359 A 359 + Sbjct: 348 S 348 >UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacillus RepID=DDL_LACGA Length = 361 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 160/366 (43%), Positives = 233/366 (63%), Gaps = 19/366 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K++VG++FGG S+E+EVS+ SA NI + ID ++FDV + I G YL N Sbjct: 3 DKIKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDG---------YLAND 53 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D + P + +++ ++ P +DV FPIVHG LGEDG LQG+ R Sbjct: 54 ADSRKVLDNPKMEVANPHKVANISNIVELKD---RPEIDVFFPIVHGNLGEDGCLQGLFR 110 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN-----ISFAEVES 176 V + PFVG DVLA+A MDK++TK L + AG+ +A +I + R ++ + + V S Sbjct: 111 VLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVAS 170 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 +LG LFVKP+NQGSSVGVS VT+E++Y +A+ AF++D KV+VE+ + G E+E AVLGN Sbjct: 171 QLGSDLFVKPSNQGSSVGVSHVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVLGN 230 Query: 237 DNPQASTCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 D P + G+I+ D FY Y+ KY D + + +PA + I +K+R A++ +Q C Sbjct: 231 DKPIVAGVGQIINAKDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATEC 290 Query: 296 AGMARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +G+AR+D L T + EVV+ E+N LPGFTNISMYPKL++ G+ YTDLIT+LI+ A+ER+ Sbjct: 291 SGLARIDSMLRTEDKEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYAMERY 350 Query: 355 AADNAL 360 L Sbjct: 351 DHKKTL 356 >UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaproteobacteria RepID=DDLA_BRUME Length = 353 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 150/358 (41%), Positives = 226/358 (63%), Gaps = 16/358 (4%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 K+R+ ++FGG+SAEH+VS+ SA N+++A+D ++++ V + + + GQW +S N L Sbjct: 4 GKMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEK 63 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP--TVDVIFPIVHGTLGEDGSLQGM 119 S L VPG ++ G P +D+IFP++HG GEDG++QG+ Sbjct: 64 P--------SSGAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGL 115 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 +VA +P G + SA +DKD+ KRL+ +AGL+ A +T+TR +F+ +E LG Sbjct: 116 AQVARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVP--AFSALEQALG 173 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 LP+F+KPA QGSSVGV KV +E Y A+ F +D K++ E+ I+ RE+EC VL ++ Sbjct: 174 LPIFIKPARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGG 233 Query: 240 Q--ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 S GEIV FY+YD KYID DG ++ VPA + ++ ++IRAIA +A++ LGC Sbjct: 234 ALFVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGC 293 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 MARVD F+T + +V+NEINT+PGFT++SMY K+ SG+ Y ++I RL+ L R Sbjct: 294 DSMARVDFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 351 >UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiaceae RepID=DDL_CHLP8 Length = 364 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 149/360 (41%), Positives = 216/360 (60%), Gaps = 6/360 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K V + FGGKS EH +S+ SA+ + ID SR+D+ L ID+ G WH + +L Sbjct: 1 MPKQTVALFFGGKSVEHIISIISARAVASHIDHSRYDITPLYIDRGGHWHGGACAKRILA 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHE-HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D + ++ + ++DV F +HG+ GEDG +QG Sbjct: 61 LDVAVLLRNGGQDEVFERLDEITSFDEGKRFDLTAFFDSIDVAFLTLHGSYGEDGKIQGC 120 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA---EVES 176 L ++P+ G + +SA MDK +TK DAG+ +A F+++T A+ A V Sbjct: 121 LDTFDIPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFMSVTSADYAADPQAICNAVTE 180 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 + P+FVKPAN GSSVG+SKV + + A+D A D KV+VE+ I GRE+E AVLGN Sbjct: 181 RFAFPVFVKPANLGSSVGISKVHNAAELRPALDKACALDAKVLVEETITGREVEVAVLGN 240 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D+P AS GEI+ SDFY ++ KY+ D AK+V+PA + E++ +R A+ ++ LGC+ Sbjct: 241 DDPIASVPGEIIPGSDFYDFEDKYVKSD-AKLVIPADLPGEVSAAVRNAALTVFKALGCS 299 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 GMARVD F+ N +++NEINT+PGFT+ISMYP L ASG+ + +LI+RL+ LALE+ A Sbjct: 300 GMARVDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSASGVEFDELISRLLLLALEKRA 359 >UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S655_9ACTO Length = 377 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 138/366 (37%), Positives = 195/366 (53%), Gaps = 11/366 (3%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL-- 59 E +R+G+VFGG SAEHEVS SA + A+ + VV LGI + G + Sbjct: 3 ETVRIGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHL 62 Query: 60 ------NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGED 113 A D P+ +DV+FP++HG GED Sbjct: 63 GTVTAGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGED 122 Query: 114 GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 G +QG+L +P+VG +LASA MDK KR LR + P++ S E Sbjct: 123 GVVQGLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPE 182 Query: 174 -VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 + L PLFVKPA GSS+G+S+V + AV+ AF DH V+VEQG+ GRE+EC Sbjct: 183 KLVVGLRGPLFVKPARMGSSIGISRVADGDDLVAAVEEAFRHDHVVLVEQGVTGRELECG 242 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 VLG P+AS GE+ + ++ Y KY D ++VPA + E+ ++IR ++V+A+ Sbjct: 243 VLGGWQPEASAVGEVRVAGGWFDYRQKYF-GDADPMIVPAPLPDEVTERIRELSVRAFTA 301 Query: 293 LGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 +G G+ARVD ++ +NE+NTLPGFT SMYPK+W SG+ Y +++ RL+ LA Sbjct: 302 IGGWGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEVVDRLVALAF 361 Query: 352 ERHAAD 357 RHAA Sbjct: 362 TRHAAR 367 >UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W6_9FIRM Length = 358 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 131/355 (36%), Positives = 212/355 (59%), Gaps = 11/355 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLR+G+VFGG+S+E+ VSL S + + I +++ L+GI+K G +++ + + Sbjct: 8 MSKLRLGVVFGGQSSEYSVSLHSVTSFLRQIHADNYEMTLIGINKNGHFYLYNG-----D 62 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D H T ++ +D N + +D +FP++HG GEDG +QG+L Sbjct: 63 VDSIEHDTWENEETCVSCAWVNGGIMPLDGSN--KVIELDCVFPVLHGKNGEDGLIQGLL 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + N+ +VG DV++SA MDK++ L ++A + A +I L ANR N +F +++ K+ L Sbjct: 121 ELMNIHYVGCDVMSSAMSMDKEIMHILCKEAKIPCADYICLY-ANRENPTFEQIQEKIEL 179 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDN 238 P +KP N GSS GV V ++E++ A AF +D K++VE+ IKG EI CAV+GN+ Sbjct: 180 PWIIKPCNAGSSYGVHFVNNKEEFESACKDAFFYDGRGKILVEKVIKGFEIGCAVMGNEE 239 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + EI +T F+ ++ KY + A PA I + + + +A + Y + C GM Sbjct: 240 IFTGSIDEIEITGGFFDFEGKYEMKGAAIY-CPARIDEKTFKEAQELARKTYIAMNCCGM 298 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 ARVD+F+T + EV++NE+NT+PG T S YP + + +G+ + DLI +LIELA++R Sbjct: 299 ARVDMFVTEDKEVILNELNTIPGLTATSRYPSMMKVAGIEFADLIDKLIELAMQR 353 >UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae RepID=B7A6N0_THEAQ Length = 321 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 140/352 (39%), Positives = 203/352 (57%), Gaps = 33/352 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 ME +RV ++ GGKS EHEVSL SA+ ++ + F L I K G W + + + L Sbjct: 1 ME-IRVLLIAGGKSPEHEVSLASAEGVLKHMP---FPTELAVIAKDGAWLLGEEALRALE 56 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 A+V K EH + V+FP++HG +GEDG++QG L Sbjct: 57 ----------------AKVAPKGEHPFPPPLDWDRYG---VVFPLLHGPMGEDGTIQGFL 97 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + P+VG+ V SA CMDKD +KR+L AG+ + P++ L R + F Sbjct: 98 EMLGKPYVGAGVAGSALCMDKDFSKRVLAQAGIPVVPWVALYRGETPLVPFEP------- 150 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNP 239 P FVKPAN GSS+G+S+V A++ AF D K +VE+ + G RE+E VLGN Sbjct: 151 PFFVKPANTGSSIGISRVERYADLEEALEEAFRHDRKAVVEKALSGVRELEVGVLGNVFG 210 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GE+ + FY Y+TKY A++++PA + P + ++ +A++AY+ LG GMA Sbjct: 211 EASPVGEVRYEAPFYDYETKYT-PGRAELLIPAPLDPGTEETVQEMALKAYKVLGLRGMA 269 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 RVD FL E E+ +NE+NT+PGFT SM+P+L+ A GL Y +L+ RL+ELAL Sbjct: 270 RVDFFL-AEGELYLNEVNTIPGFTPTSMFPRLFLAKGLTYPELLRRLVELAL 320 >UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEL0_GEMAT Length = 344 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 115/356 (32%), Positives = 183/356 (51%), Gaps = 14/356 (3%) Query: 1 MEK-LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M K LR+ ++ GG SAE +VSL S I A+ + +V+ L + ++ S Sbjct: 1 MSKSLRITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEGVLTRETERSLLAS 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + PS +LA + + ++ L D +F +HG GEDG++Q + Sbjct: 61 GVG-----SAPPSLEALAGLESRALSPVLGTLP--ELTEADCLFLALHGGQGEDGTIQAL 113 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN-ISFAEVESKL 178 L + +P+ GS LASA MDK ++K +LR AG+ A +I + + +V L Sbjct: 114 LDMVGVPYTGSGHLASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLDADDVGRHL 173 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+ VKP+ QGS+VG+S V + E+ A AV AF +D +V++E+ + GRE+ +LG+ Sbjct: 174 DWPVVVKPSKQGSTVGLSIVRAPEELAAAVREAFRYDDEVMIERFVPGRELTVGILGD-- 231 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 EI + Y Y+ KY + V A ++PE K+ A +A+Q L G Sbjct: 232 -AVLPTIEIQPVKELYDYECKYTPGMAKEFV--AELSPEEASKLADQAKRAFQALKLRGY 288 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 AR+D L P+ + E NTLPG T S+ P+ A+G+ + DL R+++LAL + Sbjct: 289 ARIDFRLDPQGQPWCLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLALAKR 344 >UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pallidum RepID=DDL_TREPS Length = 396 Score = 366 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 136/363 (37%), Positives = 212/363 (58%), Gaps = 5/363 (1%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V +++GG+SAEH+VS++SA+ + + + V+L+GI ++G W+ A Sbjct: 3 HVTLLYGGRSAEHDVSVRSARFVARTLC-LQHTVMLIGITRRGVWYAQPACALEQLCTGT 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 ++++ + G P T DV+FP++HG+ GEDG++QG+L + Sbjct: 62 VALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVT-DVVFPVLHGSYGEDGTVQGLLEMLQ 120 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKLGLP 181 +P+VG V ASA MDK K L + AGL + PF+ + A++E++LG P Sbjct: 121 VPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYP 180 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 LFVKPA GSSVG S V + A++ AF++D V+VE+ ++ REIECA+ GN Sbjct: 181 LFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPYTV 240 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 GE++ FY Y+ KY D A+V+V A + ++I +A++AY+ LG G+ARV Sbjct: 241 HGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARV 300 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 D FL EV +NE+NT+PGFT+IS++P++ QA+G+ DL+ +L+ A ER AA AL Sbjct: 301 DFFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLLSCARERFAARAALS 360 Query: 362 TTM 364 T + Sbjct: 361 TDL 363 >UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria RepID=DDL_PELTS Length = 318 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 48/353 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L+VG++ GG+S+E EVSL++ + + +A+ + V + + + + Sbjct: 3 LKVGVLMGGRSSEREVSLKTGEAVYNALKVKNYLAVKIDVGLDVVERIKEE--------- 53 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 +D+ F +HG GEDG++QG+L + Sbjct: 54 ----------------------------------RIDLAFIALHGRYGEDGTIQGLLEML 79 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF----AEVESKLG 179 ++P+ GS VLASA MDK TK++++ GL PF+ + + S + ++G Sbjct: 80 DIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKKEALKESLQACSERICREMG 139 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 LPL VK QGS++G+S V EE A A++LA+++D +VEQ I+G E+ ++LGN+ P Sbjct: 140 LPLVVKAPTQGSTIGMSFVHKEEDMAGALELAYDYDPVALVEQFIRGTEVTASILGNEEP 199 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A EIV + Y Y KY + ++P I + + I+ +AV +++LGC G+A Sbjct: 200 VALPLIEIVSATGVYDYKAKYT-AGMSDHIIPPRIPEKQQNAIKKLAVSTFKSLGCRGLA 258 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVD + + I E+NT+PG T S++P +A+G+ + DLI +L+ELA+E Sbjct: 259 RVDFIVDKQGNPFILEVNTIPGMTATSLFPDAARAAGIEFPDLIEKLVELAME 311 >UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPX6_9FIRM Length = 370 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 211/368 (57%), Gaps = 17/368 (4%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS----RFDVVLLGIDKQGQWHVSDASNY 57 +KLRV + FGG S+EHEVS SA + A++++ R++V +GI K G+W + Sbjct: 5 KKLRVALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPE 64 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSL 116 + A P + +H + ++GQ L +D+ P++HG GEDG++ Sbjct: 65 AMADGSWEQGA---DCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDGTI 121 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA---E 173 QG+ +A +P+VG VLASA CMDK + ++ AG+ + + RA A Sbjct: 122 QGLFEMARIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVLDR 181 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 E+ LG P+FVKPAN GSSVG+SK A+D+A D KV++E+ I G+E+ECA Sbjct: 182 AEAALGYPIFVKPANAGSSVGISKAADRAALDAALDVALREDDKVVLEEFIDGQEVECAA 241 Query: 234 LGN----DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 +GN N + GEI+ ++FY YD KY ++ V+PA ++ E D+++A A +A Sbjct: 242 IGNPDDPANITTTRPGEILAGAEFYTYDDKY-KNGVSQTVIPAHLSEEKLDEVKAEARKA 300 Query: 290 YQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 Y LGCAG++R D F+ V+ NE+NTLPGFT ISMYPKL + G+ + L+ RL++ Sbjct: 301 YLALGCAGLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLVDRLLQ 360 Query: 349 LALERHAA 356 LA+ R Sbjct: 361 LAVRRRKG 368 >UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZZ06_9SPHI Length = 394 Score = 360 bits (924), Expect = 6e-98, Method: Composition-based stats. Identities = 140/379 (36%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +G+ FGG+S EHE+S+ SA + AID SR+DV + I K GQW+ + + N Sbjct: 2 KANIGVFFGGRSVEHEISVISALQAIQAIDHSRYDVTPIYISKAGQWYTGEQLLDVENYR 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT-----VDVIFPIVHGTLGEDGSLQ 117 L ++T + P ++ +++ +D+ FP++HG+ GEDG+LQ Sbjct: 62 KLDE--LLNNSTKIIMSPNFEDYSFVESGAKGLFKKPLKGKIDIAFPVLHGSFGEDGALQ 119 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEV 174 G+ + +P++G DVL+SA MDK + K +L+++GL + ++ N + +V Sbjct: 120 GLFELMGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVKYVWFYSKNWQQDTTSHIGKV 179 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAV 233 E LG P+ VKPAN GSSVG+ K + E+ A+D A F HK++VEQ I +EI C+V Sbjct: 180 EQTLGYPVIVKPANLGSSVGIKKAANREELEEAIDYAAGFSHKLLVEQTIVDLKEINCSV 239 Query: 234 LGN-DNPQASTCGEIVLTSDFYAYDTKYIDED------GAKVVVPAAIAPEINDKIRAIA 286 LGN +N QASTC E +++ + +Y KY+ + G K +PA I E++DKI+ +A Sbjct: 240 LGNYENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMSGTKRKLPAEIPTEMSDKIQQLA 299 Query: 287 VQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 V +Q LGCAG++R+D L NEV +NEINT+PG ++S Y LW+A+ + L+ Sbjct: 300 VDTFQVLGCAGVSRIDFLLDQATNEVYVNEINTIPG--SLSFY--LWEATDKNFGQLVND 355 Query: 346 LIELALERHAADNALKTTM 364 LI+ A + + N L + Sbjct: 356 LIDTAFKNYREKNNLTFSY 374 >UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B158 Length = 342 Score = 359 bits (923), Expect = 7e-98, Method: Composition-based stats. Identities = 134/363 (36%), Positives = 199/363 (54%), Gaps = 34/363 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +V GG+S EH VS S NI DKS++D+ + GI K+G+W+ L + D Sbjct: 1 MKLLLVCGGQSTEHAVSRMSCVNIYKNADKSKYDIKIAGITKEGEWY-------DLVSTD 53 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + AT + + L + DV+FP++HG GEDG++QG+L +A Sbjct: 54 FSSDSWLEGATKI-------------TDHFTFLKSFDVVFPVLHGQFGEDGTIQGLLEMA 100 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF------------ 171 +P+VG V+AS MDK K+L A + P + + + + Sbjct: 101 QVPYVGCRVMASCTAMDKIYAKKLFDQAHIPQVPSLYVKKRYDDKLVVVDDEGRESFNVE 160 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 E+ + LG P FVK + GSSVG KV S + + A +D V+VE+ I E+EC Sbjct: 161 MEIYTHLGFPCFVKASRSGSSVGCYKVNSLTELLPRLHEAATYDRHVVVEKAINATELEC 220 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 AV+GND+ AS G+I+ +FY Y++KY DE A +PA + I D IR AV+A++ Sbjct: 221 AVIGNDDISASRVGQILPHGEFYTYESKYEDEQSAT-CIPARVDQSIQDYIRQAAVKAFK 279 Query: 292 TLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + G+AR D F + V +NEINT+PGFTNISMYP+L + +GL LI LI+LA Sbjct: 280 AVDGTGLARCDFFYDNDTGNVYLNEINTMPGFTNISMYPQLMKDAGLDTPALIDELIKLA 339 Query: 351 LER 353 L+R Sbjct: 340 LQR 342 >UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacterium RepID=DDL_CORJK Length = 373 Score = 359 bits (922), Expect = 8e-98, Method: Composition-based stats. Identities = 143/370 (38%), Positives = 207/370 (55%), Gaps = 24/370 (6%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 + V +++GG+S EH VS SA ++D +D ++VV +GI + G W L A Sbjct: 9 ARTTVAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWVPGTTDTSRLRA 68 Query: 62 DDPAHIALRPSATSL-------------AQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHG 108 D + + + Q G+ VDV+FP++HG Sbjct: 69 DGRDMPRVEDGGVHVQLTFGGAGTAGSAGSGAAGEMRYVTGPQAGEVFAQVDVVFPVLHG 128 Query: 109 TLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN 168 GEDG++QG+L +A + +VG+ VLASAA MDKD TKRL R+AG+ + + L + Sbjct: 129 VNGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGEELILFQPRELT 188 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGRE 228 AE + +LGLP+FVKPA GSS+G+SKV S E++ A+DLAF D+KVIVE I G E Sbjct: 189 ---AEEKERLGLPVFVKPARGGSSIGISKVDSWEEFDAAIDLAFSNDNKVIVEAMIHGAE 245 Query: 229 IECAVLGNDNPQASTCGEIVLTS------DFYAYDTKYIDEDGAKVVVPAAIAPEINDKI 282 +EC VL + + + +L FY +D KY+D + +PA + E +I Sbjct: 246 VECGVLQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSA-TIPAPLPAETIKEI 304 Query: 283 RAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 R +A++ + LGC G+ARVD F T V+NEINT+PGFT ISMYPK++ A G+ + DL Sbjct: 305 RQLAIRTFNALGCDGIARVDFFATENG-PVLNEINTMPGFTPISMYPKMFAAEGVSFGDL 363 Query: 343 ITRLIELALE 352 ++ LI AL Sbjct: 364 VSALIARALA 373 >UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE55_9FIRM Length = 312 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 118/352 (33%), Positives = 171/352 (48%), Gaps = 46/352 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ R+G+V GG S E EVSL + IV+A+ + +D V + +D Sbjct: 2 MKTKRIGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLD---------------- 45 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 P Q+ DA V V+F VHG GEDG LQ +L Sbjct: 46 -------------------PSLFPSQIEDA-------GVKVVFNAVHGLYGEDGRLQAVL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS VL+SA M+K TKR+ G+ A + LT +R ++ KLG+ Sbjct: 80 EMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLTDKDRQTAK-QDIIRKLGI 138 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN--DN 238 P VKPA QGSS+GV+ V EE A++ AF + V+ E G+E+ V+ + N Sbjct: 139 PCVVKPAEQGSSIGVTIVKKEEDLDKALEEAFSYGKLVLAEAFFTGKEVAAGVMMDSSGN 198 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P A I DFY Y KY + PA + ++ AV+AY+ LGC+G+ Sbjct: 199 PIAMPLVLIEPHVDFYDYHNKYT-KGATTYTCPAPFDECLTKALQEEAVKAYKALGCSGV 257 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ARVD + E + E+NT+PG T S+ PK +A GL + DL +++E A Sbjct: 258 ARVDEMVDAEGNFICLEVNTIPGMTATSLVPKAAKAMGLSFPDLCEKILETA 309 >UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein vanA n=122 Tax=Bacteria RepID=VANA_ENTFC Length = 343 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 131/358 (36%), Positives = 202/358 (56%), Gaps = 22/358 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D+ L P K L+ + + VDV F +HG GEDGS+QG+ Sbjct: 61 NDNCYSAVLSPDK--------KMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLF 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 113 ELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 167 PVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNS--A 224 Query: 241 ASTCGE---IVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLG 294 A GE I L + + E G++ + VPA ++ E +I+ A + Y+ LG Sbjct: 225 ALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALG 284 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 C G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 285 CRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLALK 342 >UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteobacteria RepID=DDL_SYNFM Length = 311 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 119/353 (33%), Positives = 187/353 (52%), Gaps = 48/353 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EKL V ++ GG SAE EVSL+S + + +A+DK R+ V+ +DA Sbjct: 4 EKLTVALLSGGASAEREVSLKSGEQVFNALDKQRYLVLRYDPAHDLTRLAADAE------ 57 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 +DV I+HG +GEDG++QG+L Sbjct: 58 ------------------------------------KIDVALIILHGRMGEDGTIQGLLE 81 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 +P+ GS VL SA M+K ++K+L AGL +AP + R R V +LGLP Sbjct: 82 SLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADR--REPPDLDTVADRLGLP 139 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP ++GSS+G+S V + +Q A AV+ +++D + ++E+ + G EI VLGND+ QA Sbjct: 140 VVVKPEHEGSSIGLSIVRNRDQLAAAVETGWQYDRRCLIEKYVHGIEITGGVLGNDHLQA 199 Query: 242 STCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EI+ +F+ Y KY ++ + PA ++ I K + A +A+Q L C G + Sbjct: 200 LPLIEIIPGEAYEFFDYKAKYT-PGASREICPARLSDTITAKAQEYARKAHQALCCKGYS 258 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R D+ ++ N++ I E NT+PG T S++P+ +G+ ++ L+ RLIELALE Sbjct: 259 RTDMIVSG-NDIFILETNTIPGMTATSLFPQAAAVAGISFSALLDRLIELALE 310 >UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacillales RepID=DDL_LEUMM Length = 377 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 214/371 (57%), Gaps = 13/371 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T A P H L + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHAL------KSAGDFDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLTS-----DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKTTM 364 A + L + Sbjct: 355 FAQNKKLSYSF 365 >UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=DDL_BIFA0 Length = 378 Score = 358 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 145/378 (38%), Positives = 209/378 (55%), Gaps = 26/378 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K RV +++GGK+ EH +S SA + + A+D F+ V +GI K G W V N Sbjct: 1 MAKTRVAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP----LPTVDVIFPIVHGTLGEDGSL 116 + A+ + + A+N L +DV+ P +HG GEDG++ Sbjct: 61 LAEGLPEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTI 120 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT-----RANRHNISF 171 QG+ + +P+VG VLASAACMDK TK LLR AG+ +AP ITL ++ Sbjct: 121 QGLFEMMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDG 180 Query: 172 AEV-----ESKLGLPLFVKPANQGSSVGVSKVT---SEEQYAIAVDLAFEFDHKVIVEQG 223 E E+ L PLFVKP+ GSS GV+KV A AV A D +V+VEQG Sbjct: 181 EEFLRQVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQG 240 Query: 224 IKGREIECAVLG---NDNPQASTCGEIVLT------SDFYAYDTKYIDEDGAKVVVPAAI 274 I REIECAV+ D +A+ GE+VL FY +D+KY+D + +PA I Sbjct: 241 IDAREIECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKI 300 Query: 275 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA 334 ++ ++R AV+A+ + G++RVD F+T + +V++NEINTLPG T+ISM+P+ W+A Sbjct: 301 GDDLIARVRETAVRAFDAVDGMGLSRVDTFVTADGDVLVNEINTLPGCTSISMFPQAWEA 360 Query: 335 SGLGYTDLITRLIELALE 352 G+ + ++T LIE AL Sbjct: 361 MGIPFRTVVTDLIEGALA 378 >UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUG2_ALKMQ Length = 358 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 124/361 (34%), Positives = 205/361 (56%), Gaps = 14/361 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K V ++ GGKS EH VSL SA I++++DK ++ V + I +G W + L + Sbjct: 2 KTNVYVLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIW------SNLGIVE 55 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D S V E L + N + +++FP +HGT GEDG++QG+L + Sbjct: 56 DEIKEISELMYQSSNTVISSIETFLRSSFNEREQ---NIVFPALHGTNGEDGTIQGLLEI 112 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI---SFAEVESKLG 179 ++P+VG+ V++SA +DK VTK L + + L + S +E +G Sbjct: 113 LDIPYVGNGVMSSAIGIDKVVTKDLFAKHNIPQGKYTRLLQHQWKKDKLFSIERIEETIG 172 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P +VKPA+ GSSVG+++ + E+ A+ AF F+ K+++E+ I GRE++ +V+GN+ P Sbjct: 173 YPAYVKPASLGSSVGINRCANREELEAAIHEAFSFEDKLVIEEEIIGREMQISVVGNEFP 232 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GE + F Y KY D + V+PA + ++++ +R +A++++ L C+G+ Sbjct: 233 KASVVGEFIQERQFMDYAAKYTDGKLIQ-VIPAKLTEKVSELMREVAIKSFDVLNCSGLV 291 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASG-LGYTDLITRLIELALERHAADN 358 RVD F+T + +NE+NT+PGFT +SM P LW+ + Y +LI +LI LA ER+ Sbjct: 292 RVDYFVTDDERFYVNEVNTMPGFTKLSMTPALWEKTDQTTYPELIEKLINLAFERYNKRK 351 Query: 359 A 359 + Sbjct: 352 S 352 >UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria RepID=C3RJR8_9MOLU Length = 346 Score = 356 bits (915), Expect = 5e-97, Method: Composition-based stats. Identities = 121/364 (33%), Positives = 206/364 (56%), Gaps = 32/364 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ ++ GG+S+EH VS S ++++ +D +++++ L+GID G WH DA L + Sbjct: 2 KQKLLVLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQTDLAKN 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 ++ + L DV FP++HG GEDG++QG+ + Sbjct: 62 TWL------------------DNSSMVEDVYGLLKNQDVAFPVLHGMYGEDGTIQGLFEL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI-----SFAEVES- 176 A LP+VG V+ S+ MDK TK++L G+ + + + + +F E+E Sbjct: 104 AKLPYVGCRVMGSSVAMDKIYTKKILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEI 163 Query: 177 ------KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 +LG+P F+K + GSSVG + ++ + + A ++D V+VE+ I E+E Sbjct: 164 EDYIVRELGMPCFIKASRSGSSVGCYRCDNQTELIGKLSEAAKYDRHVVVEECIDCIELE 223 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 AVLGND+ S G+I+ +FY +++KY DE+ +K +PA + +I ++IR A++ + Sbjct: 224 TAVLGNDDVIVSRVGQIMPHGEFYTFESKYEDEE-SKTCIPALVDEQIQEQIRQYAIKVF 282 Query: 291 QTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + + G++RVD FL + N++ +NEINT+PGFT ISMYP+L G+ Y +L+ RLI L Sbjct: 283 KAVDGHGLSRVDFFLDKKTNKIYLNEINTMPGFTKISMYPQLMNDFGITYPELLDRLIVL 342 Query: 350 ALER 353 AL++ Sbjct: 343 ALQK 346 >UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FYV0_9DELT Length = 360 Score = 356 bits (915), Expect = 6e-97, Method: Composition-based stats. Identities = 137/373 (36%), Positives = 212/373 (56%), Gaps = 24/373 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M R+ +V+GG+S+EH+VS++SA ++ A+D+SRF+ V + + ++G + L Sbjct: 1 MSPQRLALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPIDASLPG 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + A+ S +A + G L + FP++HG GEDG++QG+ Sbjct: 61 PTEAPLRAVLESGEPIADL-------------GAFLRSCACTFPLLHGPYGEDGTIQGLF 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDA--GLNIAPFI----TLTRANRHNISFAEV 174 V ++P+VGS VLAS+ CMDK KR + A + + P I L R Sbjct: 108 EVFDVPYVGSGVLASSLCMDKVAFKRYVAAAPNDIPVTPGISVDLVLEGRERVFERAHAA 167 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 G PLFVKPANQGSSVGVS+ A+DLA +D +V++E+G+ REIE AV Sbjct: 168 AEAHGFPLFVKPANQGSSVGVSRADDLASLDAALDLALRYDAQVVIEKGLDAREIELAVF 227 Query: 235 GNDNP--QASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 G+ P S GEI+ ++Y Y+TKY+D D A +P + +++ +A++A++ Sbjct: 228 GDGGPDTVVSPPGEIILPKGEWYTYETKYVD-DVASYAIPVELPAATTARLQELALRAFR 286 Query: 292 TLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 C+G+ARVD + ++ E +NE+NTLPGFT+ISMYPKL +G+ YT+LI++L++L Sbjct: 287 ATRCSGLARVDFLVERDSLEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTELISKLVDLG 346 Query: 351 LERHAADNALKTT 363 L + L TT Sbjct: 347 LAAYEQRRGLSTT 359 >UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacillales RepID=DDL_LACLM Length = 349 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 131/358 (36%), Positives = 208/358 (58%), Gaps = 15/358 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ SRF V I K G++ + Sbjct: 1 MSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEF----- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D PA + P + + V+FP++HG +GEDGS+QG L Sbjct: 56 TDRPAEEEKLLTNDLAESYPKISPAAIYEKDA--------VVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + L +VG ++L++++ MDK + K + G+ P++ EV KL Sbjct: 108 EILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVPYVAAFADENQVEIAQEVVEKLDF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPAN GSSVG+SKV A+ A+++D++V++EQG+ REIECAVLGN+ + Sbjct: 168 PVFVKPANMGSSVGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNSDV 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A+ GE+V FY Y++KYID + ++ +PA ++ ++ KI+ A +AY+ + AG++ Sbjct: 228 SATLPGEVVKDVGFYDYNSKYID-NKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLS 286 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 R D F+T + V +NE+N +PGFT SMYP LW+ GL Y+DLI +L++LA E Sbjct: 287 RCDFFVTKDGNVYLNEVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLAKETFETR 344 >UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 Tax=Enterococcus RepID=VANC_ENTGA Length = 343 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 118/352 (33%), Positives = 183/352 (51%), Gaps = 12/352 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + ++FGG S E+ VSL SA +++ AID +++V+ +GI W+ + + Sbjct: 1 MKK--IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVR 58 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D + + G+ DV+FP++HG GEDG +QG+L Sbjct: 59 NDTWLEDHKNCHQLTFSS---------QGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLL 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + NLP+VG V ASA CM+K + +L G+ AP + L+R + G Sbjct: 110 ELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGF 169 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KP GSS G++KVT + A+ AF + V++++ I G EI C +LGN+ Sbjct: 170 PIFIKPNEAGSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQLT 229 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 C I L F+ ++ KY A + VPA + + +I+ A Y+ LG G+AR Sbjct: 230 IGACDAISLVDGFFDFEEKYQ-LISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLAR 288 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +D F+T + + +NEINT+PGFT S YP + GL Y L+ +LI LA E Sbjct: 289 IDFFVTNQGAIYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAEE 340 >UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria RepID=DDL_GEOLS Length = 313 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 180/363 (49%), Gaps = 60/363 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ R+G++ GG SAE +VSL+S + A+ +D L + + + Sbjct: 6 LKQKRIGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDVRHNVALILREE------ 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D+ F +HG GEDG +QG+L Sbjct: 60 -------------------------------------KIDLAFIALHGRYGEDGCIQGLL 82 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS VLASA M K +K+ AGL I P+ T+ + +R N + GL Sbjct: 83 ELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQGDRCNAE----QLPFGL 138 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP +GSSVGV+ V E A+D AF +D V+VE+ IKG+E++ +L N Sbjct: 139 PVVVKPVQEGSSVGVTIVKKPEDLQAALDEAFRYDTLVLVEKYIKGQEVQVGILANQPIG 198 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EIV ++FY ++ KY D A+ + PA +A + K++ +QA+Q LGC G R Sbjct: 199 A---IEIVPKNEFYDFEAKYSD-GMAEHIFPARLAEPLYQKVQQQGLQAHQALGCDGYCR 254 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQA-SGLGYTDLITRLIELALERHAADNA 359 VD +T + + E+NTLPG T +S+ P++ Q +GL + L+ ++ A A Sbjct: 255 VDFLVTENGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEALVEQI--------ACSAA 306 Query: 360 LKT 362 LKT Sbjct: 307 LKT 309 >UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW8_CRYCD Length = 313 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 119/353 (33%), Positives = 183/353 (51%), Gaps = 46/353 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++++V ++ GG S E E+SL S + DA+ ++ F V +L K+ Sbjct: 6 QQMKVALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAKK--------------- 50 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 DD A + +P DV F +HG GEDG++QG L Sbjct: 51 DDLAQLVSQP---------------------------FDVAFLCLHGRGGEDGAIQGFLE 83 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 LP++G + +SA MDK K R+ G+ ITL R ++ A V ++LG Sbjct: 84 TIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHR--NESVDAATVIAQLGNH 141 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKPA +GS++GVS + A+ AF+ D+ V++E + G E+ AV+GN+N A Sbjct: 142 LVVKPATEGSALGVSIIEGPSALDRALTEAFKLDNAVLIETFMAGTELTVAVIGNENASA 201 Query: 242 STCGEIVLT-SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EIV +FY +++KY DG++ + PA + E ++ +AVQA++ LGC G++R Sbjct: 202 LPVIEIVPQLGEFYDFESKY-AADGSQHICPARLTDEQTTAVQQVAVQAHKALGCCGVSR 260 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 DV L + + E NT+PG T S+ P +A+G+ + L TRLIELALER Sbjct: 261 SDVILAADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQLCTRLIELALER 313 >UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified Erysipelotrichaceae RepID=Q6JH79_CLOIN Length = 355 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 128/356 (35%), Positives = 212/356 (59%), Gaps = 6/356 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEK+++ I+ GGKS E+ VSL SA +++ I+K ++++ +GI K G+W+ + Sbjct: 1 MEKIKLAIILGGKSDEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYSGDVDGIE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D A + L+ G + A VD IFPI+HG GEDG++Q + Sbjct: 61 HDTWLCEA-HCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQTLF 119 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI--SFAEVESKL 178 ++ +P+VG + A CMDK++ ++ AG++ APF+ + A+ + + + L Sbjct: 120 ELSGIPYVGCGHMRFAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAKETL 179 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHK--VIVEQGIKGREIECAVLGN 236 GLP+F+KPAN GSS G+ ++ S + + A+ AF D K VI+E I+G EI AV+GN Sbjct: 180 GLPIFIKPANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGN 239 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A + EI + F+ Y+ KY D + + PA I+P++ ++ R IA +AY+ + C Sbjct: 240 KELFAGSVDEIETAAPFFDYEGKYEMVD-SHIYCPARISPKLFEEAREIAKKAYRAMNCK 298 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 GM RVD+F+TPE+ +++NE+NT+PGFT+ S YP + + +G+ + +LI +L+ LA+E Sbjct: 299 GMTRVDMFVTPEDTIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALAME 354 >UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C4ZI29_EUBR3 Length = 369 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 94/358 (26%), Positives = 171/358 (47%), Gaps = 12/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+ + ++ GG S E +VS ++ + A+ ++ V+LL + D + AD Sbjct: 18 KMNIVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRAD 77 Query: 63 DPAHIA--LRPSATSLAQVPGKHEHQ---LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 + + + A LA+V + Q + D++F +HG GE+G +Q Sbjct: 78 EISVQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQ 137 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 + + + GSD L+SA M+K+ +K+ G+ I++TRA R + + Sbjct: 138 AAFDLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQD---DITKLD 194 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L LP VKP GSS+GV+ V ++ A+D AF++++++++E+ ++GRE V+ Sbjct: 195 LTLPCVVKPCCGGSSIGVTIVRDAAEFKAALDDAFKWENELVIEEFVQGREFSVGVI--- 251 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +A EI FY Y KY PA + ++ ++ A + + +G Sbjct: 252 EGKALPIIEIAPKEGFYDYKNKY-KAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDT 310 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +R D L +NE+ E NTLPG T S+ P+ G+ + L LI+++L+++ Sbjct: 311 YSRSDFLLNDKNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLIDISLKKYE 368 >UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWG2_9CLOT Length = 342 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 140/337 (41%), Positives = 207/337 (61%), Gaps = 7/337 (2%) Query: 22 QSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG 81 SA ++ AIDKSR++V +GI K G W + L+ A L Sbjct: 1 MSATTVLRAIDKSRYEVTPVGIKKDGSWWLYPGDIGLILDGRWESCPDNLPAF-LVPDAS 59 Query: 82 KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDK 141 + D+ + + +D + P +HG GEDG++QG+L++A +PFVG D+ +SAACMDK Sbjct: 60 VGGLLIRDSDHSDTVKKIDCVIPALHGKNGEDGTIQGLLQLAGIPFVGCDMTSSAACMDK 119 Query: 142 DVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKLG-LPLFVKPANQGSSVGVSK 197 +T +L AG+ A F L + + ++E LG P+FVKPAN GSSVGVSK Sbjct: 120 VITNVMLEQAGIPQARFTWLYAYEFQSAPDEAVLKIEKDLGSYPVFVKPANAGSSVGVSK 179 Query: 198 VTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQASTCGEIVLTSDFYAY 256 + E+ A+ A + D K+++E+ I G+E+ECAVLGN D+ AST GEI +++FY Y Sbjct: 180 AENREELRAAIAKAAKEDGKILIEENIVGQEVECAVLGNEDDLLASTVGEIAPSNEFYDY 239 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 + KY+ + + +PA + + + IR+ A +AYQ LGC+G+ARVD F+ +EV++NE+ Sbjct: 240 EAKYLS-GTSGLYIPAHLESGVIETIRSTAQKAYQVLGCSGLARVDFFVRNGSEVLLNEL 298 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 NTLPGFT+ISMYPKL + GL +LI RLI+LA++R Sbjct: 299 NTLPGFTSISMYPKLMEHEGLSNQELIHRLIQLAVKR 335 >UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGF5_CLOCL Length = 341 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 134/357 (37%), Positives = 215/357 (60%), Gaps = 24/357 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + ++FGG+S+E+++SL SA +++ IDK+++ V +GI K+G W+ S + Sbjct: 1 MNK-NIAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKEGLWYEYTGSIDKIE 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +++ D + VDV+FP++HG GEDG++QG+ Sbjct: 60 DGSWI---------------NDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLC 104 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF---AEVESK 177 ++ LP VG+ VL+SA CMDK +K +L D +N+ P+ + N +V K Sbjct: 105 KLLRLPCVGASVLSSALCMDKAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKK 164 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 LG +FVKP+N GSSVGVSK+ +E+ + +A++ AF++D +V+VE+ I REI+ A++ + Sbjct: 165 LGEEVFVKPSNGGSSVGVSKLKAEDSFEVAIEKAFKYDKRVLVEKAIAAREIKVAIIEDG 224 Query: 238 NPQASTCGEIVLTS---DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + GE+V + +FY Y+ KY E +++VPA + E+ DKI A+A++AY+ L Sbjct: 225 IELKTKIGEVVYKNSNKEFYDYEVKYT-EGMNELIVPAKLETEVMDKIEALALKAYKVLD 283 Query: 295 CAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 C GMARVD F+ E+ +NEINT+PGFT S +PKLW+ +G+ T+LI LI+ A Sbjct: 284 CRGMARVDFFIDRYTSEIYLNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNA 340 >UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=DDL_WIGBR Length = 350 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 148/345 (42%), Positives = 227/345 (65%), Gaps = 3/345 (0%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K V ++FGG+S EHE+SLQS+ +I++AIDK +++++L+G++K G+ + +NY+L Sbjct: 2 KKTVAVLFGGESKEHEISLQSSISIINAIDKKKYNIILIGVEKNGKIGIRSINNYILFKY 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + +I L P+ + L +PGK+ +Q +N + L +DVIF I+HG+ GE+G+ QG+ Sbjct: 62 NINYIKLAPAVSYLYIIPGKNNYQFYSLKNKKML-KIDVIFSILHGSNGENGAFQGLFNT 120 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 PFVGS+VL+S+ CMDKD++KR+L G+++ P ITL + ++ + + P Sbjct: 121 IYTPFVGSNVLSSSICMDKDISKRILSTFGISVVPSITLY-YENYKKKINKIINNIKFPC 179 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP+NQGSS GV+ ++D+AF + K+++E I+GREIE VLGN N +S Sbjct: 180 CIKPSNQGSSFGVNVANDFISLKESIDVAFLYSKKILIEPFIQGREIEVGVLGNRNVISS 239 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 CGEI FY Y KYI + K+++PA I+ EI++KI+ IA A+ +L C+ MARVD Sbjct: 240 VCGEIKFKKIFYDYKEKYISK-KTKIIIPAKISNEISNKIKKIAKLAFISLECSIMARVD 298 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 FLT ++ +NEINT+PGFT S+YPKLW SGL + LI +LI Sbjct: 299 FFLTKNKKIFLNEINTIPGFTKNSIYPKLWSKSGLDFKSLINKLI 343 >UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2RKQ9_ACIFE Length = 310 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 112/353 (31%), Positives = 171/353 (48%), Gaps = 47/353 (13%) Query: 1 MEKL-RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M+K RV +V GG S E EVSL + I++A+ + +D V + +D Sbjct: 1 MDKKDRVAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLD--------------- 45 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 P HI + A+ V+F VHG GEDG LQG+ Sbjct: 46 ----PEHIVDQLKASGAR-----------------------VVFNAVHGLYGEDGRLQGI 78 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L + +P+ GS VLASA MDK TK L ++ + A I L + + A + ++G Sbjct: 79 LEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDKKRDQDPK-ARILEEIG 137 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 +P VKPA QGSS+GV V E+Q A+ AF++ V+ E G+E+ V+ ++ Sbjct: 138 IPCVVKPATQGSSIGVVIVKDEKQLDDALQEAFQYGDHVLCEAFFTGKEVAAGVMMGEDG 197 Query: 240 QAST--CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +A I +FY + KY + PA E +++ IAV AY+ LGC+G Sbjct: 198 RAVPMPLVLIEPHVNFYDFHNKYT-KGATTYTCPAPFDAETTRRLQKIAVAAYEALGCSG 256 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +AR D+ L + + E+NT+PG T S+ PK A G+ + DL ++++ A Sbjct: 257 VARTDLMLADNGDCIALEVNTIPGMTATSLIPKAAAAMGISFPDLCEKILKTA 309 >UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W7_9ZZZZ Length = 348 Score = 349 bits (897), Expect = 6e-95, Method: Composition-based stats. Identities = 98/356 (27%), Positives = 170/356 (47%), Gaps = 9/356 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG+S+E +VSL + + A+ ++ DVVL +D + + + Sbjct: 1 MKIAVLCGGRSSERDVSLSTGIQVARALRETGHDVVL--VDACVDFPLDCRPEEVFEKAL 58 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P +A + + + D++F +HG GE+G LQ + + Sbjct: 59 PIENHAIGAAAPCVERFFDRASGFFGKNVLEICKSADIVFNALHGDEGENGKLQAVFDLL 118 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 N+ + GS M+K ++K+L R G+ + L+ +++ AE+ KLGLP Sbjct: 119 NICYTGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSESDKCR--AAELCEKLGLPCV 176 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKPA+ GSSVGVS V + +++ A+D AF +H VIVE+ IKGRE ++G+ + Sbjct: 177 VKPASLGSSVGVSIVRTIDEFFTALDSAFSLEHTVIVEKYIKGREFAVGIVGS---RVLP 233 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 EI+ FY Y KY + PA I + +++ + ++ LG AR D Sbjct: 234 AIEIIPKHGFYDYKNKYQ-PGCTVEICPADIDSDTAERMAEATRKVFRVLGLGAYARADF 292 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + + E NTLPG T +S+ P+ A L + L+ +I+ +L A + Sbjct: 293 MVDENG-IYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIKESLLLRATERR 347 >UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho africanus TCF52B RepID=DDL_THEAB Length = 367 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 116/358 (32%), Positives = 195/358 (54%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + VG++FG KS EHE+S+ +A ++ +DK++++++ + I K G+W L N + Sbjct: 2 INVGLLFGSKSVEHEISIITAHQVLSFVDKNKYNIIPIYITKDGKWLTGKILEDLENFKN 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L + ++ + K ++ + + T+DV HG+ GEDGS+QGML Sbjct: 62 LER--LEKKSKQISSISAKDGKLILHSNIKKI--TIDVCLLTFHGSNGEDGSIQGMLEFL 117 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 N+P+ G + +S MDK +TK +L++ + + F+ + N N + L P+ Sbjct: 118 NVPYTGCGMYSSMYTMDKVITKLILKEKNIPVVDFLYTNKKNYTNDFLNHCKEVLEYPMI 177 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKPA GSS+GV KV + + A++ AF FD KVIVE+ I RE+ CAV+G N S Sbjct: 178 VKPARLGSSIGVKKVNDKCELEEAIETAFSFDDKVIVEKWIDSRELNCAVMGYKNIVVSE 237 Query: 244 CGEIVLTSDFYAYDTKYIDEDG--AKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI DF+ Y+ KY+ + + ++PA I + + I++IA + L C G R+ Sbjct: 238 IEEIKKQKDFFDYNEKYVQKGKKFSNHIIPAPIDENLKNTIKSIARDTFNALECHGNIRI 297 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 D L+ +N++ +NE+N++PG +S Y LWQ SG ++ +I +I +A E + Sbjct: 298 DFLLSKDNKIYVNEVNSIPG--ALSYY--LWQMSGFTFSQVIDNMISIAFEAFKDKKS 351 >UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomonas putida RepID=DDLA_PSEPK Length = 352 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 142/362 (39%), Positives = 207/362 (57%), Gaps = 15/362 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M++ + +VFGG+S+EH V+L+SA I A+ V +GID++G W Sbjct: 1 MKQNVIALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPG 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 A D SA ++ PG ++G +D++FP +HG GEDG++QG+ Sbjct: 61 AVD-------RSAPLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLA 113 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + LP VGS VL SA MDKDVTKR+++ AGL + P++ + + E+ LG Sbjct: 114 AMCGLPCVGSGVLGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMR----PWEELVECLGS 169 Query: 181 P-LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 LFVKPA GSS+GVS+V++ +YA A +A D KV+VE + GREIEC VL + Sbjct: 170 STLFVKPATSGSSIGVSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEG 229 Query: 239 PQASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 AS GEI+ +Y Y KY + VP+ + P+I +I+A++VQA++ L Sbjct: 230 LMASVVGEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELK 289 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G ARVD FLT E E+++NEINTLPGFT+ SMYPK+++ SG L+ L+E L + Sbjct: 290 GYARVDFFLTEEGEIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLSSASK 349 Query: 357 DN 358 + Sbjct: 350 ER 351 >UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria RepID=DDLA_PSEAE Length = 346 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 115/353 (32%), Positives = 184/353 (52%), Gaps = 20/353 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL+V ++FGG S E +VS+ S ++ A+ + V+ + G + L + Sbjct: 4 DKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVD-TASGLLGAEEERRLLASK 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + P + SLA + + L + L VDV F +HG GEDG+LQ +L Sbjct: 63 ----VKEVPPDSDSLAIIRSGKQSLL----SAGELAGVDVFFLALHGGTGEDGTLQALLD 114 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + GS LASA MDKDV KRL AG+ A ++ + EV +LG P Sbjct: 115 AGGFAYTGSGHLASAMAMDKDVAKRLFLAAGVETASWLMAPASEE------EVREQLGFP 168 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP +QGS+VG+S V S+ + A++LA + +V++E+ + GRE+ VL + QA Sbjct: 169 LVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLDD---QA 225 Query: 242 STCGEIVLTS-DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 GEI+L + + Y+ KY + V PA + P I + + +A++ ++ L +G +R Sbjct: 226 LPVGEILLGGQEVFDYEHKYQ-AGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSR 284 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 D L + + E+NTLPG T S+ P+ A+G+G+ +L R+ L +ER Sbjct: 285 TDFRLDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIER 337 >UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes RepID=C7G8P6_9FIRM Length = 351 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 165/358 (46%), Gaps = 12/358 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG S E +VS ++ + A+ ++ V+LL + D + +++ Sbjct: 1 MKIVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEE 60 Query: 64 -----PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + P + + D++F +HG GE+G +Q Sbjct: 61 VSVKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQA 120 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + + + G+ L+SA MDK+++K+L AG+ ++ +A+ S + + Sbjct: 121 AFDLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKAD---CSDDITKLGV 177 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP GSS+GVS + E+Y A+D AF ++ +IVE+ +KGRE V+ Sbjct: 178 QFPCVVKPCCGGSSIGVSIAHNAEEYKAALDEAFRWEENLIVEEYVKGREFSVGVI---E 234 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +A EI FY Y KY A PA ++ + +K++ A Q Q LG Sbjct: 235 GKALPIIEIAPVQGFYDYKNKY-KAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTY 293 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 +R D L + E NTLPG T S+ P+ Q G+ + +L +LI+++L+++ Sbjct: 294 SRTDFLLDENENIYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQISLDKYEK 351 >UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaerobacteraceae RepID=DDL_THETN Length = 389 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 126/377 (33%), Positives = 204/377 (54%), Gaps = 20/377 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L+V ++FGGKS EHEVS+ + +++ ++K +++ + + + + G+W+ + N D Sbjct: 2 LKVAVMFGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKGLLDISNYKD 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT-----VDVIFPIVHGTLGEDGSLQG 118 + + L VPG ++ + VDVIFP HGT GEDG++QG Sbjct: 62 IPSLLKKCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQG 121 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVE 175 + ++AN+P+VGS V+ SA MDK + K + + L I ++ R +E Sbjct: 122 LFQLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIE 181 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVL 234 SKL P+FVKPAN GSS+G+SK + ++ A+++A +D K+IVE+ +K E+ C+V+ Sbjct: 182 SKLKYPMFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDRKIIVEEAVKDPMEVNCSVM 241 Query: 235 G-NDNPQASTCGEIVLTSDFYAYDTKYI-----DEDGAKVVVPAAIAPEINDKIRAIAVQ 288 G + + + S C V +F +Y KY+ + +PA I E +I+ +A + Sbjct: 242 GIDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKK 301 Query: 289 AYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 +Q L C+G+AR+D L E +V +NEINT+PG S LW+ G+ + LI RLI Sbjct: 302 VFQILDCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLI 357 Query: 348 ELALERHAADNALKTTM 364 E A+ERH T Sbjct: 358 EYAVERHKEYARNMYTF 374 >UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales RepID=DDL_METS4 Length = 382 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 152/354 (42%), Positives = 217/354 (61%), Gaps = 17/354 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNA 61 + V ++FGG+SAEHEVS+ SA N+ A+D R+ V + IDK+ G W + L Sbjct: 2 RRNVALLFGGRSAEHEVSIVSAGNVARALDPDRYAVTPIAIDKETGAWRLCPP---LAPG 58 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + PA + P +A +PG + + DV+ P++HG GEDG++QG L Sbjct: 59 EAPAMVREGP---RVAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALD 115 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL-GL 180 +A +P+VGS V+ SAA MDKDV KRL+RDAGL I P++ R +++ E L Sbjct: 116 LAGVPYVGSGVIGSAAAMDKDVAKRLMRDAGLPIVPYLV--AGPRRGVAYTEAVEALESR 173 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVL--GND 237 LFVKPAN GSSVGVS+V Q+ A+ AF +D K+++E+ + REIE AVL Sbjct: 174 TLFVKPANMGSSVGVSRVADAGQFDQALAHAFAYDEKILIERAVPRAREIEFAVLETAEG 233 Query: 238 NPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + S GEI FY YD KY+D DGA +++PA++AP + +++ +A +A++ L C Sbjct: 234 EVRVSPPGEIAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALAC 293 Query: 296 AGMARVDVFLTPENE--VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 AG+ARVD+FL P++ + +NE+NTLPGFT ISMYPKLW A+GL L+ LI Sbjct: 294 AGLARVDLFLDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 347 >UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4Z4D3_EUBE2 Length = 382 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 98/357 (27%), Positives = 173/357 (48%), Gaps = 19/357 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGI-----DKQGQWHVSDASNYL 58 +R+ ++ GG S E +VSL + + +++ ++ + +L I D + + ++ ++ Sbjct: 40 MRIVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDDSEVKTFFTEKNDLG 99 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 +D+ A + + + D++F +HG+ GEDG +Q Sbjct: 100 ELSDNLKKKTADIPAEVKRRTEAR--ESFFGRNVLELCKEADMVFMGLHGSNGEDGKVQA 157 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + + + G+D L+SA M K++ K++L G+ + +TL + ++ + Sbjct: 158 TFDLLGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGVTLHKGHK--------IEYV 209 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP GSSVGVS +E+++ A+D AF ++ V+VE+ + GRE AVL + Sbjct: 210 PFPCVVKPCCGGSSVGVSIAHNEKEFEDALDEAFSYEDTVLVEEFVDGREFSVAVL---D 266 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +A EI FY Y KY K PA I +I +++ A + Q G Sbjct: 267 GKALPVIEIEPLEGFYDYKNKY-KAGSTKETCPANIPEDIASQMQFWAEKCCQAAGVTTY 325 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 ARVD L N + EINTLPG T+ S+ P+ A G+ Y +L ++IE++L ++ Sbjct: 326 ARVDELLDKNNNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIEISLAKYE 382 >UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostocaceae RepID=DDL_OENOB Length = 377 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 133/369 (36%), Positives = 218/369 (59%), Gaps = 15/369 (4%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK+RVG+ FGG S+EH+VS +SAKN DA+D ++ + + I K+G S+ S +L Sbjct: 3 EKIRVGLFFGGNSSEHDVSKRSAKNYYDALDPEKYQIFPVLISKKGIMIDSETSKRVLFG 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 +D + LA +P K+ + + L +DV+FP VHG LGEDG+L G+ R Sbjct: 63 EDEDEL--------LAGLPNKNADIFGPIDSIRNL-KLDVLFPSVHGNLGEDGTLAGLFR 113 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + N+P+VGS + A A DK +TK L+ G+ +I + + +++ + V +LG Sbjct: 114 LMNIPYVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKPDWDSVSKQLGEV 173 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQ 240 +FVK ANQGSSVGVS+VT+ E+Y A+ +F++D K++VE+ ++ E+E +LGND Sbjct: 174 VFVKAANQGSSVGVSRVTNAEEYENALRDSFQYDEKLLVEKAVESPTELEIGLLGNDRVI 233 Query: 241 ASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 S G S ++ Y K++D K +PA I+P + ++ +AV+AY+ LG Sbjct: 234 TSPIGAHWAPGQDHGSGWFDYKNKFVDNSKMKYQIPAKISPAKSKELENMAVKAYKVLGI 293 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G AR+D ++ + E+ ++E NTLPG TN+S++P L++A+G+ + +LI+LA E Sbjct: 294 KGFARIDFLMSKDGEIFLSEPNTLPGNTNMSLFPILFEAAGMNRSQQAEKLIQLAFEEFK 353 Query: 356 ADNALKTTM 364 + + + Sbjct: 354 REQNISYSF 362 >UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXB8_DESAC Length = 305 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 109/354 (30%), Positives = 175/354 (49%), Gaps = 54/354 (15%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++ R+G++ GG SAE EVSL++ IV A+++ + VV + DK + + Sbjct: 4 KQQRIGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADKTLPAQLIE-------- 55 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 +DV+F VHG GEDG++QGML Sbjct: 56 -----------------------------------KQIDVVFLAVHGRFGEDGTIQGMLE 80 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG-L 180 + +P+ GS VLASA +DK VTKR++ G+ + N ++ ++ G Sbjct: 81 LMQIPYTGSGVLASALAIDKAVTKRMVAQDGVTTPAATLV----DVNSDVDDIVAQCGHF 136 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P VKP +GS++G++ + ++ A+ A ++D +V+VE I GRE+ +V+ N + Sbjct: 137 PQVVKPVREGSTLGIAIANNADELKQAIAQARDYDRRVLVEDYIDGREVTVSVM---NGR 193 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A + EIV S FY Y KY + +VPA + I+ AV +Y +LGC G AR Sbjct: 194 ALSIIEIVPESGFYDYTAKYTV-GKTRYLVPAPLPESQYKAIQQAAVASYASLGCRGAAR 252 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA-LER 353 VD +T +N E+NT+PG T S+ PK G+ + L+ +++ A L+R Sbjct: 253 VDFMVTDDN-FYFLEVNTIPGMTETSLLPKAAADCGMDFAKLVEGILDDASLDR 305 >UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobacillus RepID=B5ELC0_ACIF5 Length = 308 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 97/349 (27%), Positives = 165/349 (47%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R+ +++GG S E EVSL S ++ + D V + I Sbjct: 6 RIAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAVGVDI--------------------- 44 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + ++ Q + + F + HG +GEDG LQ L + Sbjct: 45 -------------------QPAILQQQMAESGAQI--AFNVCHGAVGEDGLLQACLETLD 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK K+L R AGL + I L R + ++ ++ G PL++ Sbjct: 84 MPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILLHRGSHTP----DLGARFGWPLYI 139 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP + GSS+GVSKV + A+ AF + +V+ E + G E+ +L + QA Sbjct: 140 KPNHGGSSLGVSKVGGPAELDAALQCAFAIEDEVLCEGAVIGHEVTVGIL---DGQALPP 196 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I FY Y KY+ +D + ++P+ + + +++A+A++A+ LGC RVD Sbjct: 197 IVIETPRAFYDYTAKYLADD-TRYLLPSGLGAPLEQQLQALALRAFAELGCRDWGRVDFM 255 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + E+N++PG T+ S+ P +A+G+G+ +L ++ A R Sbjct: 256 IGGDGRPHLLEVNSVPGMTSHSLIPMAAKATGMGFPELCATILRTAQRR 304 >UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteria RepID=DDL_SYNJB Length = 325 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 177/351 (50%), Gaps = 47/351 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + + ++ GG+SAE +VS + K A++ V ++ D+ + Sbjct: 1 MNIVVLAGGRSAERQVSWVTGKACKRALEDLGHRVKVIDPDEDLPLRL------------ 48 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + D ++ +HG GEDG +QGML Sbjct: 49 ----------------------------WQERQAGCDFVWIALHGPGGEDGVVQGMLDWL 80 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 LP+ GS LASA MDK V+K++ R AG+ + +++ +++A+ ++LG PL Sbjct: 81 GLPYQGSGPLASALAMDKLVSKQIFRAAGIPTPDWQVWD--DQNPLTWADCAAELGSPLV 138 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP+N GS+VG+S V E +A ++LA ++ +E+ + G+EI ++L Q Sbjct: 139 IKPSNNGSTVGISIVRDERSFAQGLELARSVSSRIFLERYVPGKEITLSILSG---QVLP 195 Query: 244 CGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ DFY Y+ KY G++ ++P +++P + A ++AYQ LGC G+ARVD Sbjct: 196 AIEIIPAQGDFYDYEAKY-APGGSRHLIPCSLSPAGLARCEAAGLKAYQALGCEGLARVD 254 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + PE + E+NTLPG T S+ P A G +T+L+ R+++ AL++ Sbjct: 255 LRVDPEENPWVLEVNTLPGMTPTSLCPDAAAALGWTFTELVERMLQDALQK 305 >UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P076_9BACE Length = 350 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 107/358 (29%), Positives = 170/358 (47%), Gaps = 11/358 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG S E VSL + + +A+ +V L+ + + ++ S Sbjct: 1 MKIVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKGAELSGLFGAPIS 60 Query: 64 PAHIALRPSATSLAQVPGKH---EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 H + A LA V + + D++F +HG+ GEDG +Q Sbjct: 61 EEHKRVSRQAPDLAAVKASRTEGGDSMFGPGVLELCGMADLVFLALHGSCGEDGRVQAAF 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS L SA MDKD+TKR++ D ++ + T++ E L Sbjct: 121 DLMGIPYTGSGYLGSAIAMDKDLTKRMVADV-VSTPGWKTVSYTADDIDGLVETAR---L 176 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PL VKP GSS+GVS + E+ A+ + ++EQ +KGRE++ A+L + + Sbjct: 177 PLVVKPVASGSSIGVSIAHTAEELRTALTEGLALGGRTVLEQYVKGRELQVAILED---K 233 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EI+ FY Y+ KY A+ V PA I+PE K+R AV+ Y+TLG A +R Sbjct: 234 ALPSIEIIPKQGFYDYENKYQP-GAAEEVCPADISPEAEQKLRDAAVRVYETLGLAVYSR 292 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D L + E EINTLPG T S+ P+ A G+ Y L R+++ +L Sbjct: 293 ADFILDADGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVDASLAARKQGR 350 >UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacteria RepID=DDL_YERP3 Length = 306 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 111/349 (31%), Positives = 171/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ + ++ D + D Sbjct: 4 KVAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVD------------------TKDF 45 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 L+ D +F +HG GEDG+LQG+L Sbjct: 46 PVTQLKEQG-------------------------FDKVFIALHGRGGEDGTLQGVLEFLQ 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES---KLGLP 181 LP+ GS V+ASA MDK TK + + GL I+P++ L R +S E+ + KLGLP Sbjct: 81 LPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFETLSPEELVACVAKLGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+++GSSVG+SKV + A+ AF+ D V++E+ + G E A+LG++ Sbjct: 141 LIVKPSHEGSSVGMSKVDHASELQKALVEAFQHDSDVLIEKWLSGPEFTVAILGDE---V 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY YD KY+ D + P+ ++ E ++ A+A+QAY L C+G RV Sbjct: 198 LPSIRIQPPGVFYDYDAKYLS-DKTQYFCPSGLSDESEQQLAALALQAYHALDCSGWGRV 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV + + E+NT PG T+ S+ P + GL ++ L+ R++ LA Sbjct: 257 DVMQDRDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILMLA 305 >UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria RepID=DDL_HAMD5 Length = 320 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 100/363 (27%), Positives = 170/363 (46%), Gaps = 64/363 (17%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S+E ++SLQS +V + ++ D + + V++ Sbjct: 4 KVAVLLGGTSSERQISLQSGHAVVAGLREAGIDARPID---TKNFLVTELKEKGFTK--- 57 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 F +HG GEDG LQ +L Sbjct: 58 -------------------------------------AFIALHGRDGEDGHLQAVLEFLK 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA-----------------NRH 167 +P+ GS V+ASA MDK +K + + AGL ++P++ L R NR Sbjct: 81 IPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNREQIWPNVTQNTSNDLLLNNRI 140 Query: 168 NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGR 227 + + ++LGLPL VKP+ +GSS G++KV +Q A+ A+ +D +++VE+ G Sbjct: 141 SNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQLDDALKKAWHYDEEILVEKWHFGT 200 Query: 228 EIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAV 287 E+ A+LG+ I ++ FY Y KY+ D + P+ + E ++ +++ Sbjct: 201 ELTVAILGD---TVLPSIRIQVSDIFYDYQAKYVS-DKTQYFCPSGLKQEQEKQLATLSM 256 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 AY+ LGC G RVDV L E + EINT PG T+ S++P + +G +++L+ +++ Sbjct: 257 NAYRALGCDGWGRVDVMLDDEGHFYLMEINTAPGMTDHSLFPMAARQAGFSFSELVCKIL 316 Query: 348 ELA 350 LA Sbjct: 317 SLA 319 >UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=5 Tax=Aquificales RepID=C0QUP4_PERMH Length = 303 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 111/351 (31%), Positives = 178/351 (50%), Gaps = 52/351 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL++ +++GG S+E E+S++S K + +A+ K F + Sbjct: 1 MNKLKIALLYGGSSSEREISIKSGKAVENALKKLGFQYSVFD------------------ 42 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 P + + + + P D+ F +HG +GEDG++QG+L Sbjct: 43 -------------------PAEGKDFIKKITDYNP----DLAFIALHGKIGEDGTIQGVL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + GSD+ SA CMDK +TK +L+ G+ + T+ ++ N + +LG Sbjct: 80 EFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVPEGYTIQNLDQIN------DLRLGY 133 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP ++GSS+GV V +E+Q AV + D KVI+E+ IKGREI +L N + Sbjct: 134 PVVVKPNSEGSSIGVKIVENEDQLGKAVGEILKIDSKVIIERFIKGREITVGIL---NGE 190 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI + FY Y KYI ++ + + PA I + KI+ A++ Y LGC G+AR Sbjct: 191 PLDIIEIKVKEGFYDYYNKYISQE-TEYICPAEIESSLYRKIQNTALKIYNILGCKGVAR 249 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 VD L + + E+NT+PG T+ S+ PK G+ + LI ++IE AL Sbjct: 250 VDFILDKD-KPYFLEVNTIPGLTDHSLIPKAAAVKGINFESLILKIIEGAL 299 >UniRef50_B0MP08 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MP08_9FIRM Length = 397 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 131/379 (34%), Positives = 207/379 (54%), Gaps = 21/379 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+RVG+ FGGKS EHEVS+ SA ++I+K +++V+ + I K + +V + + + Sbjct: 2 KIRVGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASYR 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQN--GQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + L GK + L + T+DV FPIVHGT EDG QG L Sbjct: 62 NLKSLLKESRRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGYL 121 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESK 177 + +P+VG DV++SA MDK V K + +D G+ + + ++ + A++++K Sbjct: 122 QTIGVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAK 181 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 + PL VKP N GSSVG+ ++EQ A+D AF + K++VE I +EI C+V G+ Sbjct: 182 IAYPLIVKPINLGSSVGIMIAHNDEQLDEALDNAFTYASKLLVEPAITNLKEINCSVCGD 241 Query: 237 -DNPQASTCGEIVLTSDFYAYDTKYIDEDG---------AKVVVPAAIAPEINDKIRAIA 286 AS C E V T + +Y KYI D K +PA I+ E ++IR +A Sbjct: 242 YATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTLA 301 Query: 287 VQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 V+A+++LG +G +R+D + V +NEINT+PG S+ LW+ G+ Y++L+ Sbjct: 302 VKAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDE 357 Query: 346 LIELALERHAADNALKTTM 364 +I LAL+R + AL + Sbjct: 358 MISLALKRERENKALTFSF 376 >UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJ24_FIBSS Length = 344 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 108/356 (30%), Positives = 179/356 (50%), Gaps = 19/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSD---ASNY 57 M +LRV ++ GG S EH+VS+ S +V A+D ++++ + IDK G WH S + Sbjct: 1 MSRLRVLVLMGGPSTEHDVSVVSGTGVVRAMDPEKYNIHPVLIDKDGTWHWSSRELSPYQ 60 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 N + +L +A + + P E LP+ D+ F +HG GEDG +Q Sbjct: 61 KANFSENYFHSLEGTAANKKKSPALSE-----------LPSADIAFLALHGKWGEDGHIQ 109 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 ML N+P+ G +LASA MDK +K + R G+ P+ + + + + V + Sbjct: 110 AMLENWNIPYTGCGLLASALAMDKIKSKEIYRANGIPTPPYRVIWKHDFTGDTLVSVADE 169 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 LG PL +K GSS+G+ + ++ F+ ++++ E+ I G E C + + Sbjct: 170 LGYPLVIKDPLGGSSIGIGIAKNLDEAGKIAQDLFKDSNRLLCEKFIAGGEASCGYIEGE 229 Query: 238 NPQASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 P E+ T +++ ++ KY + V PA APE+ +I+ + A+ LG A Sbjct: 230 KP--LPPTEMRMTTREYFDFEAKY--NGECQEVTPAEFAPELTARIQELVKNAHYALGGA 285 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G +R DV +T + E+ E NTLPG T S+ P+ G+ Y+ LI +I+ +LE Sbjct: 286 GYSRTDVRITKDGELFAIETNTLPGMTPTSLLPQQAACVGITYSQLIDLIIDKSLE 341 >UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia RepID=DDL_BORHD Length = 365 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 201/367 (54%), Gaps = 21/367 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-SRFDVVLLGIDK-QGQWHVSDASNYL 58 M K + ++FGG S EHE+SL+SA I A+ K ++++ IDK G W++ D+ Sbjct: 1 MMKKNLMLIFGGVSFEHEISLRSAYGIYSALMKLDKYNLYPSFIDKITGIWYLLDS---- 56 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D + R S+ ++ +PG +DV+FPIVHG GEDG++QG Sbjct: 57 --VPDAPELIKRDSSAIISLIPGCG------IFVNDEDLEIDVVFPIVHGRTGEDGAIQG 108 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVE 175 L++ ++P VG+ +L SA ++K K LL+ + + PFI + + +++ Sbjct: 109 FLKMMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIK 168 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+ VKPA GSS+G+S ++ Q ++ AFE+D V+VE+ +K REIEC+V+G Sbjct: 169 QSLNYPVIVKPAMLGSSIGISIAYNDTQIEKCIEEAFEYDLTVVVEKFMKVREIECSVIG 228 Query: 236 NDNPQASTCGEIVLTSD-FYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 N+ + T GEIV+ FY YD KY I + +PA + + I+ A Y+ Sbjct: 229 NEQIKIFTPGEIVVQDFVFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYKC 288 Query: 293 LGCAGMARVDVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L GMAR+D + + + +NEINT+PGFT+ISM+ K+ + GL Y L+ L+ LA Sbjct: 289 LELRGMARIDFLIEKDTNLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLVDNLVSLAF 348 Query: 352 ERHAADN 358 + +A Sbjct: 349 QSYAKRK 355 >UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacterales RepID=DDL_DESPS Length = 322 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 116/361 (32%), Positives = 179/361 (49%), Gaps = 48/361 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 E+LR+ ++ GG S E EVSL A + +DK ++ V Sbjct: 7 ERLRIALIAGGTSGEREVSLTGADGVERILDKEKYLVSRYD------------------- 47 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 SAT L ++ ++D F ++HG GEDG++QG L Sbjct: 48 ----------SATDLPRLAADAA-------------SIDFAFILLHGLHGEDGTIQGFLD 84 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P+ GS VL SA MDKD+ K +A L +A + T+ + E+ LGLP Sbjct: 85 LLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAAGDF--FYSEELIEDLGLP 142 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD-HKVIVEQGIKGREIECAVLGNDNPQ 240 L VKPA GSS+G+S +EE+ ++ A + ++VEQ IKGRE+ CAVLGND+ Q Sbjct: 143 LVVKPACAGSSIGISLAHTEEELLAGINHARDCSAGAIMVEQFIKGRELTCAVLGNDDLQ 202 Query: 241 ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A EIV F+ Y+ KY ++ + PA IA + ++++ A++A+Q L G Sbjct: 203 ALPVLEIVPGDKYAFFDYEAKYQP-GASEEICPALIADALREQVQDHAIRAHQALRLRGY 261 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 +R D + ++ + E NT+PG T S+ P+ A+G+ + L+ LIEL LE+ Sbjct: 262 SRTDFIYGEDGKLYLLETNTIPGMTETSILPQEAAATGMDFPSLLDTLIELGLEKSKGKK 321 Query: 359 A 359 Sbjct: 322 G 322 >UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteobacteria RepID=DDL_THICR Length = 313 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG +AE +VSL+S ++ A+ D V + Sbjct: 17 KVAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAVGCDVTS------------------- 57 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 AQ + D F +HG GEDG +Q +L Sbjct: 58 ------------------------VAQLVEIAQKYDRAFIALHGRWGEDGGVQAVLDSLA 93 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP+ GS + ASA MDK TK L + GL FI ++ + ++ + L P+ V Sbjct: 94 LPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSPSRPLDVETFD----LTFPVIV 149 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP+++GSS+G+ KV + + AVD A ++D ++++EQ I GRE CAVL + +A Sbjct: 150 KPSHEGSSIGMRKVDTLDALQEAVDFAQQYDSEILIEQWITGREFTCAVL---DGEALPM 206 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 ++ DFY +D KY + + + P + +I+A+ +QA+ +G RVD+ Sbjct: 207 IQLKTDHDFYDFDAKYQS-NTTEYLCPCGLEIAEEKRIQALVLQAFDAVGARHWGRVDLM 265 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L +N+ + EINT+PG T+ S+ P +A L ++ L+ +LI L L Sbjct: 266 LDDQNQPWLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVLKLISLTL 312 >UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes RepID=A9KQG5_CLOPH Length = 340 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 102/347 (29%), Positives = 171/347 (49%), Gaps = 12/347 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS-DASNYLLNAD 62 ++V ++ GG S E EVSL S I +A+ + ++V+LL + + + D+ + Sbjct: 1 MKVVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDLYLGIKDVTNIDSLFRKMEDQ 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQ--LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +P + +L ++ + LI D +F +HG++GE+G LQ M Sbjct: 61 NPYQYQVPKEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSIGENGQLQAMF 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + + GS + S MDK ++K +++ G+ +I E+E L L Sbjct: 121 DIYGISYTGSGYIGSLLAMDKGLSKVIMQKHGIETPDYIVADLTEEQ-----ELEKTLML 175 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P +KP + GSSVGVS V S+E+ A+D A ++++KV++E+ I GRE +L N Sbjct: 176 PCVIKPLSCGSSVGVSIVRSQEELGKALDYAKKYENKVLIEELIVGREFSVGIL---NHH 232 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EI+ + FY Y KY A V PA + EI+ K++ A++ ++ L +R Sbjct: 233 ALPLIEIIPKTGFYDYTNKYQ-AGMATEVCPAQLEDEISIKMQEAALKVHEVLQLGFYSR 291 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 VD L + E NTLPG T S+ P+ A G+ Y+ L ++ Sbjct: 292 VDFLLKEDGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKLCELIL 338 >UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R862_9FIRM Length = 392 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 119/371 (32%), Positives = 207/371 (55%), Gaps = 13/371 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 +++V + FGG+S EHE+S+ SA ++ A++ +++V+ L I K G+ + L + Sbjct: 14 RIKVVVAFGGESVEHEISILSAHQVMQAMNPMKYEVIPLYIAKDGRLLYHPLNTELERFE 73 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + SL + + + + D++FPI+HGT GEDG+ QG L Sbjct: 74 NLDKVEREGYEVSLQRRGNRFYMCPNKYSFLRKEISFDMVFPILHGTHGEDGTFQGYLST 133 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 ++P++G VL A DK + K++L D+GL +AP+ T + +F +LG PL Sbjct: 134 LHIPYIGCSVLGGAIGQDKIIMKQILEDSGLPVAPWFYWTLLKPLDDTFFRKAERLGYPL 193 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNP-Q 240 VKPAN GSS+GV+KV +E + A+ A+++D +V++E+ I+ +EI CAVLG++ + Sbjct: 194 IVKPANLGSSIGVAKVENEVELHRAMIEAYQYDGRVVIEKAIEHVQEINCAVLGDEQTCE 253 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDG------AKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 AS E++ + D +Y KY+ +G + +PA I E+ +I+ +A + ++ L Sbjct: 254 ASVLEEVLSSKDILSYADKYVCGEGVKGIVNTRRCIPARIDEELALEIQTLAKECFRCLC 313 Query: 295 CAGMARVDVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +G R+D E + + INEINT+PG S+ LW+ S L + LI RL+++A +R Sbjct: 314 ASGTGRIDFLYNRETKDLYINEINTIPG----SLAFYLWEKSNLPFPKLIDRLVQIAKKR 369 Query: 354 HAADNALKTTM 364 +A + + Sbjct: 370 YAQEQKRVYSY 380 >UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C8F Length = 358 Score = 339 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 98/349 (28%), Positives = 159/349 (45%), Gaps = 15/349 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG S E EVSL S I +A+ + +V L G + Sbjct: 18 MKIIVLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWP-GIREGEEVRYRTREEGY 76 Query: 64 PAHIALRPSATSLAQVPGKHEHQ--LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + A L ++ H + LI + D++F +HG GEDG +Q +L Sbjct: 77 HFSSEIGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQIQAVLE 136 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 +P GS MDK+++K +R AG+ + + F LP Sbjct: 137 AYGIPHTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLAEKGKTSRPDF--------LP 188 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 VKP + GSSVGV+ V EE+++ A++ AF +V+VE+ I GRE VLG+ +A Sbjct: 189 CVVKPLDCGSSVGVTIVEREEEWSAALEAAFSHGGRVLVEKKITGREFSVGVLGD---RA 245 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI+ S FY Y KY + + PA I K++ A+ ++ L +RV Sbjct: 246 LPAIEIIPESGFYDYQNKYQP-GMTREICPAWIDGMQEVKMKETALTVHRILELGYYSRV 304 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 D + + + E NTLPG T +S+ P+ +A+G+ Y +L ++ Sbjct: 305 DFMMDEDGAIYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIVNNG 353 >UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes RepID=D2LR31_BACS4 Length = 404 Score = 339 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 128/382 (33%), Positives = 210/382 (54%), Gaps = 24/382 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV ++FGG S EHEVS+ SA + +D+SR++++ + I K+G W+ D + Sbjct: 9 RTRVAVIFGGMSVEHEVSVISALQAIQNMDESRYEIIPVYISKEGAWYTGDTLLDIEEYK 68 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP---LPTVDVIFPIVHGTLGEDGSLQGM 119 + + + L + + + + +DV FPIVHGT EDG LQG Sbjct: 69 NLKGLLAKSQRIQLLREGDNRVIINKEPKPKFGKAYINEIDVAFPIVHGTFAEDGVLQGY 128 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVES 176 L + LP+VG DV++S+ MDK + K + RD+GL I ++ + +VE Sbjct: 129 LELLGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYVWFYSTKWNEDQDELVKKVEG 188 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLG 235 KL P+ VKPAN GSSVG+SK + ++ AV+LA +F +K+++E+ ++ EI C+VLG Sbjct: 189 KLQYPVIVKPANLGSSVGISKAANVDELEEAVELASQFANKIVIEKMVQNMTEINCSVLG 248 Query: 236 N-DNPQASTCGEIVLTSDFYAYDTKYIDE-----------DGAKVVVPAAIAPEINDKIR 283 + + +AS C +++ + +Y+ KY + ++PA I+ E +I+ Sbjct: 249 DYEAAEASVCEQVLGNDEILSYEDKYAGGGSKGGGASKGMESTNRIIPADISEEKTKEIQ 308 Query: 284 AIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 +AV A+Q LGC+G++R+D + + N V INEINT+PG S+ LW+ +G Y +L Sbjct: 309 ELAVAAFQVLGCSGVSRIDFLIDNDTNNVFINEINTIPG----SLSFYLWEPTGKPYKEL 364 Query: 343 ITRLIELALERHAADNALKTTM 364 LI+LAL+R L ++ Sbjct: 365 TNDLIQLALKRTREREQLMFSI 386 >UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia magna RepID=DDL_FINM2 Length = 350 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 118/363 (32%), Positives = 208/363 (57%), Gaps = 18/363 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + +++GG S EHEVS+ SA+ +++ + K +++V + + + ++ + + + Sbjct: 1 MQK-NIYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIK 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D+ L + + + P VIFP +HG+ GEDG++QG + Sbjct: 60 SDEE-----------LILDTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFI 108 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +V +LPFVG +VL SA CMDK T + + A ++ L + + +N+ E+ K Sbjct: 109 KVLDLPFVGCNVLGSALCMDKGYTNDIFELNKIPQAKYVVLCKNDDYNL--KEIFEKTSK 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 ++VKP N GSSVGV + +EE+ A+ AF++D +++VE+ I G E++ AV+GNDNP Sbjct: 167 AVYVKPCNAGSSVGVMRAETEEELEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPV 226 Query: 241 ASTCGEIVLTS-DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 AS G + +F+ YD KY D +++ P + ++ K R +A + Y+ + +G + Sbjct: 227 ASRPGVYQIHDVEFFDYDAKYND-SKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFS 285 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASG-LGYTDLITRLIELALERHAADN 358 RVD+F+ +NE+ +NEINT+PG T SM+P LW+ + + +++ LI LA+E + + Sbjct: 286 RVDMFV-KDNELWVNEINTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLAVEEYKKNK 344 Query: 359 ALK 361 A K Sbjct: 345 AYK 347 >UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=C1YHT6_NOCDA Length = 374 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 206/365 (56%), Gaps = 16/365 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHV--SDASNYLLN 60 K+RV +VFGG+S+EHE+S +A +++ +D R+++V +GI + G W + D + ++ Sbjct: 7 KIRVAVVFGGRSSEHEISCVTAGSVLSVVDHDRYEIVPVGITRTGNWVLTSGDPESLRID 66 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLI--DAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 A A ++ LA ++ + + L VDV+ P++HG GEDG++QG Sbjct: 67 AGTRALPSVSEDGVDLALPFDSAGQLMVVDPVKGPERLAGVDVVLPLLHGPFGEDGTIQG 126 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR--HNISFAEVES 176 + + + + G+ V +S+A MDK K +LR G+ + F+ +T + + Sbjct: 127 LFEMMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFVAITDRQWRTERKRVLDDVA 186 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGIKGREIECAV 233 +LG +FVKPA GSSVG+SKV V E D KV+VE + GRE+EC V Sbjct: 187 ELGATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREHDPKVLVEAQVVGREVECGV 246 Query: 234 LGNDN---PQASTCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQ 288 L +++ P S E+ + DFY ++ KY+ + +PA + E ++RA+A + Sbjct: 247 LESEDGGTPDVSLPAEVHVADGFDFYDFEAKYLSTSS--LTIPAELPEEATARLRALAAE 304 Query: 289 AYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 ++ +GC G+ARVD F T + ++++NE+NT+PGFT S +P++W A+G+ Y L+ R+I Sbjct: 305 VFEAMGCEGLARVDFFYTEDGDILVNELNTMPGFTPASAFPQMWAATGVDYAALVERMIS 364 Query: 349 LALER 353 AL R Sbjct: 365 TALRR 369 >UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKY4_9GAMM Length = 313 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 101/348 (29%), Positives = 153/348 (43%), Gaps = 50/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG S E ++SL+S ++ A+ + D + + ++ Sbjct: 11 RVAVLMGGWSGERDISLKSGNAVLAALRRQGVDAHAVDLTRE------------------ 52 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 L D +F +HG GEDG+LQG L + Sbjct: 53 -------------------------TARCMALEGYDRVFIALHGECGEDGTLQGCLDMGG 87 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G+ VL SA MDK KRL L AP+ LT V LGLPL V Sbjct: 88 MPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLTPG----FDPEAVADALGLPLIV 143 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA GSS+G+++V A + A +V EQ I GRE AVLGN+ Sbjct: 144 KPARGGSSLGITRVDRVADLPAAFEAARVQPGQVFAEQWITGREFTVAVLGNE---PLPV 200 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EI S FY Y KY +D + P ++ +++++A+ A+ L G RVD+ Sbjct: 201 IEIRAASGFYDYHAKYEADDTGYLCPPPDLSRSAQLELQSLAIAAFAALEGCGWGRVDIL 260 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 E + E+NT+PG T S+ PK +G+ + +L R+++ + E Sbjct: 261 QDEHGENFLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRILDSSFE 308 >UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQQ8_9FIRM Length = 312 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 175/351 (49%), Gaps = 44/351 (12%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M + ++ +V GG S E E+S Q+ I+ A+ ++ A LN Sbjct: 1 MNQDKIVVVMGGPSTEAEISRQTGSAILKALQSKGYN----------------AEGMELN 44 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 A + ++F +HG GEDG LQG L Sbjct: 45 PPTFAEDIKKSGCA--------------------------IVFNALHGKFGEDGVLQGTL 78 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS VLA+A MDK +KR+ G++ T R AE++ L Sbjct: 79 DMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHTYYRYEMKRDLAAEIKQGFSL 138 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-P 239 P+ VK A+QGSS+GV V +++ A+ AF ++ +V+VE+ I+G+E+ AV GN+ Sbjct: 139 PVVVKAASQGSSIGVYIVETKDALEDALKEAFSYNDEVLVEEFIRGKELTVAVWGNEEKK 198 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +A EI TS Y Y++KY + + ++PA ++ E +I+ +A++ + GC G+A Sbjct: 199 EAFPIIEITTTSGRYDYESKYT-KGASTHIIPARVSAEKTKEIQDLAIKTFTACGCKGVA 257 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 RVD+ L+ + + E+N++PG T +S+ P +A G+ + +L R++E+A Sbjct: 258 RVDMMLSEDGTPYVIEVNSVPGMTELSLVPDAGRAMGVEFPELCERILEMA 308 >UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococcus RepID=DDL_PROMP Length = 355 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 128/359 (35%), Positives = 208/359 (57%), Gaps = 21/359 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNY 57 EK +GI+FGG+S EH+VS+ SAK + A+ + +RF V I+K G W +D S Sbjct: 5 EKKCIGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDNDQSLV 64 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 LL + QV K E + N +D+ FP++HG GEDG++ Sbjct: 65 LLKEKR------KNETIDKNQVFPKREINFL---NTIEFQGIDIWFPLLHGVNGEDGAIH 115 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA----- 172 G+L+ P VG +L SA MDK + K++ + ++ + + + Sbjct: 116 GLLKFTQKPIVGGGILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLSV 175 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 E+ KL LP+FVKPAN GSS+G+SK + + A+ A+E D ++++E+G+ RE+EC Sbjct: 176 EIIEKLKLPVFVKPANSGSSLGISKAKTRSEIIKALQKAWEIDSRIVIEEGLDVRELECG 235 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 ++GN AS GE+ ++D+Y YD+KY ++ ++++PA I +I+++I+ IA+++ + Sbjct: 236 IIGNLKLTASEIGEVSYSTDWYDYDSKYSMDN--QIIIPADIDSQISEQIKDIAIRSCRA 293 Query: 293 LGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L G ARVD FL N++ +NEINT+PGFT+ SM+P LW ASGL L+ +L++++ Sbjct: 294 LNIYGFARVDFFLEKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDIS 352 >UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium RepID=C8W8J3_ATOPD Length = 319 Score = 336 bits (862), Expect = 7e-91, Method: Composition-based stats. Identities = 113/357 (31%), Positives = 181/357 (50%), Gaps = 45/357 (12%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRF-DVVLLGIDKQGQWHVSDASNYLL 59 ++KL V +V GG S EHE++++S K A+ ++ F +V LL + ++ Sbjct: 6 LKKLHVAVVSGGWSDEHEIAMESGKQCAAALKEAGFINVDLLDVAEK------------- 52 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D DV++ +HG GEDG +QG+ Sbjct: 53 -----------------------------DFVVALAQGDYDVVYVAMHGRFGEDGCIQGL 83 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN-RHNISFAEVESKL 178 L + ++P+ S VLASA +K+++K + R AG+ I + + ++ L Sbjct: 84 LEILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPSGTVFTDEQVDKLIEDL 143 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P+FVKP+ GSS GV++VTS E+ A+ LA E ++++E+ + G EI V+GNDN Sbjct: 144 GFPMFVKPSGNGSSYGVTRVTSREELPAALKLAGEQGERILIEECVVGTEITVPVIGNDN 203 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P A EIV +FY+ TKY V+PA + P + + + +A++A+ LGC G+ Sbjct: 204 PTALPIVEIVTGDEFYSIKTKYEPAS-LHHVIPARLEPAVYARAQELAIKAHNALGCRGV 262 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +R D +T + E V+ E NT+PG T S+ P + G+ + +L TR IE ALE Sbjct: 263 SRSDFIVTEDGEPVVLETNTIPGMTARSLLPDSARTGGIDFPELCTRFIEFALEDRQ 319 >UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS02_SYNAS Length = 352 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 109/363 (30%), Positives = 178/363 (49%), Gaps = 18/363 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L+VGI+ GG S+E EVSL S +N+ D +D ++ V + +D QG + N Sbjct: 2 MGRLKVGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQN 61 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 L+ A +A K E +D F +HG G+DG +QG+L Sbjct: 62 TTRDITERLKGEARRIAYEDLKKE--------------IDFAFISLHGKYGDDGCIQGLL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF---AEVESK 177 + +P+ G V+ASA MDK + +++LR AG+ + + + S V+ Sbjct: 108 ELLRIPYTGPGVMASALGMDKHLQQKILRAAGVAVPESLLVREEEWRQDSQIVKDRVKEF 167 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 G P F KP +GSSVGV+ V E ++ A ++D V+VE+ ++GRE C VL + Sbjct: 168 PGYPCFTKPIREGSSVGVTVVRDEADLERGMEDALKWDRAVLVEEYLEGREFSCIVLEEE 227 Query: 238 -NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 EI S+F+ YD KY+ K P I P++ ++I+A ++A++ LG Sbjct: 228 GQFHPLELTEIHPQSEFFTYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIRAFKALGFR 287 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 R+D F+ + ++I + N+ G S + + +G+ + +IT LIE A+ H A Sbjct: 288 SYGRIDGFILNDGRILITDPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIENAIRIHEA 347 Query: 357 DNA 359 Sbjct: 348 KQG 350 >UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YDR1_DICT6 Length = 311 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 184/353 (52%), Gaps = 48/353 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++G++ G KS+E E++ ++A+NIV+A+ +D + + ID+ ++ A+ Sbjct: 1 MKIGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDENVVENIKKAN-------- 52 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 ++V HG GEDG++QG+L + Sbjct: 53 -----------------------------------INVAIISAHGKYGEDGTIQGLLELL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES---KLGL 180 +P+VGS VLASA +DK + K++ + +I L++ + KL Sbjct: 78 GIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELETKDLNNIVKNVSKLKK 137 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P +KPA QGS++G+S ++EE+ ++LAF++D +I+E+ IKG+EI + +NP Sbjct: 138 PWIIKPATQGSTIGLSLASTEEELLKGIELAFKYDENIIIEEYIKGKEITAGIYDINNPV 197 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI+ + FY Y+TKY + ++PA + E+ +K + + + A+Q LGC ++R Sbjct: 198 CLPLIEIIPKTGFYDYETKYT-PGLSDHIIPARLPKEVYEKAQGLGILAHQALGCRHLSR 256 Query: 301 VDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 VD+ + N + + E+NT+PG T S+YP+ +A G+ + +LI I+ L+ Sbjct: 257 VDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFPELIDSFIKATLK 309 >UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS09_SYNAS Length = 355 Score = 336 bits (861), Expect = 9e-91, Method: Composition-based stats. Identities = 121/361 (33%), Positives = 193/361 (53%), Gaps = 19/361 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KLRVGI+ G S+E EVSL+S +NI ID+ ++ + + +D SDA+ + + Sbjct: 8 KLRVGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMD-------SDAALWEIPLK 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 R LA+ + ++ + + VD++F +HG GEDG +QG+L + Sbjct: 61 LLMRNCTRDVEEDLAEEAVRVPYEELKTR-------VDLVFLALHGKYGEDGCMQGLLEL 113 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA----NRHNISFAEVESKL 178 +P+ GS VLASA MDK ++R+L G+++ + + R N F +E ++ Sbjct: 114 LKIPYTGSGVLASALGMDKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQEI 173 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P VKP+ +G S GV KV S + A++ AF +D +VE+ I G E+ C +LG + Sbjct: 174 GFPCVVKPSREGCSTGVKKVMSRAGLSDALNGAFLWDCTALVEEFIDGMEVTCGILGGNP 233 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P A T E + TSD + + K++ G + PA + E KI+ +AV+A++ L G Sbjct: 234 PTALTPSETIATSDVLSLEDKFLYGQG-ENKTPARLPGETLMKIQEVAVKAFEALDLKGY 292 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 AR+D+F+T V++ E NT PG T ++ ASG+ T L+ R++E AL HA Sbjct: 293 ARIDMFVTSAGRVLVLEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAALSVHAGKK 352 Query: 359 A 359 Sbjct: 353 G 353 >UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W6_9ZZZZ Length = 343 Score = 336 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 166/348 (47%), Gaps = 15/348 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG S E +VSL S I +++ +S V L + + +SD + + + Sbjct: 5 MKITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDA--FTSDGN 62 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + A LI + D++F +HG +GEDGS+Q L Sbjct: 63 FMYTVPKEPPDLKALRAEVPGSALIGDGVLELCRLSDIVFLALHGGMGEDGSIQAALSSM 122 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GSD A MDK ++K L R G+ A F L + + + + LP Sbjct: 123 GIPYTGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKKGDSTD--------GIPLPCV 174 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP + GSSVGVS V ++E A A++ A++++ KV+ E I GRE VL +A Sbjct: 175 VKPCSCGSSVGVSIVDTKEALAGALETAYQYEEKVLAEDKICGREFSVGVL---LGRALP 231 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 EI FY Y+ KY + + PA + + A+A++ ++ LG +R+D Sbjct: 232 AIEIRPKDGFYDYERKYQS-GMTEEICPADLPEAEAASLGALALKVHRALGLGSYSRIDF 290 Query: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + + E NTLPG T +S+ P+ A+G+GY L + + A Sbjct: 291 IREEKTGKFICLEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338 >UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLF9_9FIRM Length = 357 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 111/365 (30%), Positives = 205/365 (56%), Gaps = 16/365 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + +++GGKS EHE+S+ +AK++++ +D+ ++ + + +DK G+W+ + N ++ Sbjct: 2 KNLYLLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRWNYLGKNTK--NIEN 59 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + + ++ + FP +HGT EDG++QG + Sbjct: 60 EKELVVEGFGNVADSISNFFAKDFVNENA--------IFFPAMHGTFSEDGTIQGFFDIM 111 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLGL 180 +L +VG++VL+SA CMDK + G+ + +T+ ++ + K+G Sbjct: 112 DLTYVGNNVLSSAVCMDKGTANDVFAGNGILQPEYYLVTKYEFNKNKDLQIKNILEKIGE 171 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 F+KP N GSSVGV+KVT +E+ A+ AF++D++V+VE+ + G E++ V+GN+ + Sbjct: 172 VSFIKPCNAGSSVGVTKVTKKEEIEPALIEAFKYDNRVLVEEAVIGDELQVLVMGNNILK 231 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS G + +T +F+ Y+ KY DE ++P + E +I+++A +AY C G AR Sbjct: 232 ASLPGGVKVTREFFDYEAKYFDE-TTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFAR 290 Query: 301 VDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASG-LGYTDLITRLIELALERHAADN 358 VD+F+ + ++++NEINT+PG T +SM P ++ + Y+D + LIELA+E + Sbjct: 291 VDIFVRDSDRKMLVNEINTIPGMTAVSMAPAMYMKTFKKTYSDFLDELIELAVENKKEKD 350 Query: 359 ALKTT 363 +L T Sbjct: 351 SLTTN 355 >UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho melanesiensis BI429 RepID=DDL_THEM4 Length = 361 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 122/360 (33%), Positives = 190/360 (52%), Gaps = 14/360 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L +GI FG KS EHE+S+ +A+ ++ +ID+ +++V+ + I K G+W L D Sbjct: 2 LNIGIFFGSKSVEHEISIITAQQVLSSIDRKKYNVIPIYISKSGEWFTGKVLEDLETFKD 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + V + G T+D F + HGT GEDG+ QGM + Sbjct: 62 FDKLEKKAKKIDSFSVKNNKLLL----KYGLKKQTIDFCFLVFHGTNGEDGTFQGMCEIF 117 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ G + +SA MDK VTK LL++ +++ F T N F E LG P+ Sbjct: 118 GIPYSGCNHFSSAFTMDKVVTKLLLKEKEISVVDFEYTTEINEE--FFKRCEKNLGYPMI 175 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKPA GSS+GVSKV + + AV FD+KV+VE+ I REI CAV+G N S Sbjct: 176 VKPARLGSSIGVSKVVDRKNFEEAVKNVLLFDNKVLVEKWINAREINCAVMGYKNIFVSE 235 Query: 244 CGEIVLTSDFYAYDTKYIDEDG--AKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI +DF+ ++ KY + + ++PA I + +KI+ IA ++ L C+G R+ Sbjct: 236 LEEINKKNDFFNFEEKYFKKGKKFSNHIIPARIDENLKNKIKEIAKDTFKILECSGNVRI 295 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 D + +++ +NEINT+PG +S Y +WQ SG ++ +I +I + LER + Sbjct: 296 DFLI--ADKIYVNEINTIPG--ALSFY--IWQKSGFTFSQIIDNMINMGLERFKDKKIVS 349 >UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales RepID=DDL_ANASK Length = 308 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 114/347 (32%), Positives = 165/347 (47%), Gaps = 49/347 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 RV +++GG+S+E EVSL++ DA+ + DVVLL +D + + Sbjct: 7 KRVAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLEVAARL------------ 54 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 V+V F +HG GEDGS+QG+L Sbjct: 55 -------------------------------RAERVEVAFVALHGRFGEDGSIQGLLESM 83 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS VLASA MDK V+K + R GL +A + RA+ +I ++ GLP Sbjct: 84 AIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGSIGVGDLP--FGLPCV 141 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKPA +GSSVGV V + A A VIVE+ +KG E++ AVL + +A Sbjct: 142 VKPAGEGSSVGVHLVNEAAELGPACRDAASHAGDVIVERYVKGTEVDVAVL---DGKALG 198 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 EIV + FY Y KY K PA + + A A++ +GC+G+ RVD Sbjct: 199 AIEIVPANAFYDYAAKYT-AGTTKYFYPARLPEAHVRAVMEAAEAAHRGIGCSGVTRVDF 257 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + I E+NTLPG T S+ PK+ GL + DL R+++ A Sbjct: 258 IVAGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304 >UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira RepID=DDL_LEPBJ Length = 351 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 108/355 (30%), Positives = 176/355 (49%), Gaps = 17/355 (4%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ + FGG S EH +S+++ I + V + + + G W V Y ++ Sbjct: 3 KIAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVVP--LQYRISIPYE 60 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 A + + G + I + D++F +HG GEDGS+QG LRV Sbjct: 61 AVNSSDLFEEEFQKTNGVSKMDFISNLDA------DIVFLGLHGGKGEDGSIQGFLRVLG 114 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES--KLGLPL 182 +P+ GS V ASA MDK ++ +G +APF + + N V LG P Sbjct: 115 VPYTGSGVAASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTNSPEETVIKLMSLGFPQ 174 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-----GND 237 F+KP GSSV K+T++EQ + + L FE D KV+ + + G E+ C VL G Sbjct: 175 FLKPVEGGSSVSTYKITNQEQLSRQLALIFESDSKVMSQSFLAGTEVSCGVLERYRNGKL 234 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 A EIV +F+ +++KY + G++ + PA I+ + +++ +A+ A+ +LGC G Sbjct: 235 ERIALPATEIVPGGEFFDFESKY-KQGGSREITPARISKQEMTRVQELAIDAHTSLGCRG 293 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +R D + E I E NTLPG T S+ P+ +A+G+ ++ LIE+ L+ Sbjct: 294 YSRSDFIIVG-GEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIEIGLK 347 >UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteriaceae RepID=C7N496_SLAHD Length = 317 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 105/350 (30%), Positives = 170/350 (48%), Gaps = 45/350 (12%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V ++ GGKS E EVSL S K +A++ S F+V LL D Sbjct: 11 NVAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLD---------------TAEKADL 55 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + P DV F +HG GEDG++QG L Sbjct: 56 KRLIDEP---------------------------FDVAFLALHGRGGEDGTIQGFLETVG 88 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS-FAEVESKLGLPLF 183 +P+ GS + AS+ ++K K AGL +A +T++ + + + +++ G+P Sbjct: 89 IPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTISEDDILDENLISDIVETCGIPCV 148 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP +GSS+G++ V A A+ A D + +VEQ I G E+ V+GND+ +A Sbjct: 149 VKPTTEGSSLGMTIVRDAADIAEAIKTALAVDVEAMVEQFISGTELTVGVIGNDDAEALP 208 Query: 244 CGEIVLT-SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 +IV T +FY Y KY G++ + PA ++ ++ + + +AV A+ LGC G++R D Sbjct: 209 VIQIVPTEDEFYNYHAKY-AAGGSRHLCPAPVSRDVTENAQEMAVAAHMVLGCRGVSRTD 267 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + + ++ + E NT+PG T S+ P + +G+ + L +LI LALE Sbjct: 268 IIVDADDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQLCEKLIALALE 317 >UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_HALHL Length = 304 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 163/348 (46%), Gaps = 55/348 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG SAE ++SL+S I+ A+ + +D A DP Sbjct: 12 RVAVLMGGTSAERDISLRSGGAILAALQRCGYDA---------------------EAYDP 50 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 AL + L DV+F +HG GEDG++QG+L + Sbjct: 51 RDRAL------------------------EGLRGYDVVFIALHGRGGEDGTVQGLLDLLG 86 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VL SA MDK KRL + +GL LT +R + +G P+ V Sbjct: 87 IPYTGSGVLGSALGMDKWRCKRLWQGSGLPTPAGQLLT-GDRPVLD-----EGVGYPVIV 140 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSS+G+S+V E+ A A +A +D V+ E ++G E A+LG+ QA Sbjct: 141 KPAREGSSLGMSRVEGPEELAEAYRVAAAYDDTVLAEAWVEGEEYTVALLGD---QALPS 197 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + F+ Y KY ED P+ + PE ++ A+ +A+ G G RVDV Sbjct: 198 IRLETPHAFFDYAAKYQAED-TGHHCPSGLGPEEEAELGALCREAFIASGGNGWGRVDVM 256 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + E+NT+PG T+ S+ P +G+G+ +L+ R++ AL Sbjct: 257 RDTGGRWWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARILGEALR 304 >UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacteria RepID=DDL_PSYWF Length = 332 Score = 334 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 157/349 (44%), Gaps = 55/349 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V +VFGG S E VSL S ++ A+ D Sbjct: 37 KVAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFD---------------------- 74 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 Q+ L D +F ++HG GEDG LQG+L Sbjct: 75 -----------------------PKDQDVTELKNYDRVFNVLHGRGGEDGQLQGLLDWLG 111 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP GS VLASA MDK TK+L GL+ APF L + + ++ + LGLPL V Sbjct: 112 LPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVL----GADTDWQQIVNTLGLPLIV 167 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP ++GSS+G+SKV + ++ A ++A V+ E+ I GRE ++ ++ A Sbjct: 168 KPVHEGSSIGMSKVNTLDELPKAYEVAAGCGDVVMAEKWITGREFTIVIIDDE---AYPV 224 Query: 245 GEIVLT--SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 + S+FY Y+ KY D + +P ++ E ++A+++ A++ + G R+D Sbjct: 225 IRLQPADISNFYDYEAKYNRND-TQYHIPCGLSAEEEAHLQALSLAAFKAVDAKGWGRID 283 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 E + EINT+PG T+ S+ P +A G+ + L ++ L Sbjct: 284 AMQDEEGNFWLLEINTVPGMTSHSLVPMAAKARGMNFEQLCWHILAQTL 332 >UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=DDL_ACIB3 Length = 308 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 165/350 (47%), Gaps = 55/350 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GGKSAE VSL S + ++DA+ +S Sbjct: 9 KVAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFD---------------------- 46 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 ++ L D F ++HG GEDG +QG+L N Sbjct: 47 -----------------------PQNRSVTELVNYDRAFIVLHGRGGEDGQIQGVLEWLN 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G+ V SA MDK TK++ + + L AP+ +T+ V ++LGLP+ + Sbjct: 84 IPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITK----ETDLDSVIAELGLPVII 139 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP ++GSSVG+SKV E +A A++ A + D V+ E+ I GRE + L N Q Sbjct: 140 KPVHEGSSVGMSKVEKAEDFAAAIEKATQHDAVVMAEKWITGREFTISFL---NGQPLPV 196 Query: 245 GEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 + +D FY Y+ KY D + +P ++ K++A+ ++A+Q +G G R+D Sbjct: 197 IRLQPPADVAFYDYEAKYQRND-VEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRID 255 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + + E+NT+PG T+ S+ PK +A G + +L +++ LE Sbjct: 256 AMQDEQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILDQTLE 305 >UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular organisms RepID=DDL_RHOFD Length = 346 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 109/354 (30%), Positives = 162/354 (45%), Gaps = 50/354 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ A+ D Sbjct: 28 KVAVLMGGASAEREVSLMSGQGVLQALISQGVDAHAFD---------------------- 65 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P+ LA++ + F +HG GEDG++QG L + Sbjct: 66 ------PAERDLAELKVEGFSH---------------CFIALHGRFGEDGTVQGALELLG 104 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS V+AS+ +DK +TKR+ R GL + R + +E + LG P+ V Sbjct: 105 IPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEW----RQVDSAAATSEAFAALGSPMIV 160 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NPQAST 243 KP +GS++G++KVT EQ A LA D V+ EQ +KG E+ +LG+ A Sbjct: 161 KPDREGSTIGLTKVTQIEQCGAAYALAARHDAMVLCEQFVKGDEVTIPLLGSGAGAHALP 220 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 IV Y Y KY D + +VPA + I+ +A++AYQ LGC G ARVDV Sbjct: 221 VIRIVAPDGNYDYQNKYF-TDTTQYLVPANLPAGEEAHIQQLALKAYQVLGCRGWARVDV 279 Query: 304 FLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + + EINT PG T S+ P +A+G+ Y L ++ A +AA Sbjct: 280 MIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALCLEVLRHATLDYAA 333 >UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AVY8_9BACE Length = 398 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 128/378 (33%), Positives = 206/378 (54%), Gaps = 20/378 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV ++FGGKS EHEVS+ S ++D ++DV+ + + K + ++ D+ + + Sbjct: 7 KTRVAMMFGGKSVEHEVSVISGIQAYMSMDTDKYDVIPVYMTKNNEMYIGDSIGDIESYK 66 Query: 63 DPAHIALRPSATSLAQVPG--KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + + + G K + +DV FP+VHGT EDG QG L Sbjct: 67 NIDELLKKSQRVIMINEDGRVKLVQYPVKKLGKNVEVGIDVAFPVVHGTNVEDGGFQGYL 126 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNI--APFITLTRANRHNISFAEVESKL 178 + +PFVG DV ASA MDK +TK +L+++ + + A TL+ ++E+ Sbjct: 127 KTMGIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDARLYTLSDYADMESMMNDIENVF 186 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 G P+ VKP N GSSVG+S S + A +VD AF + KV+VE I REI C+VLG++ Sbjct: 187 GYPVIVKPVNLGSSVGISVAKSRVELANSVDDAFRYATKVLVEHAITNLREINCSVLGDE 246 Query: 238 N-PQASTCGEIVLTSDFYAYDTKYIDEDG---------AKVVVPAAIAPEINDKIRAIAV 287 N AS C E + T D +Y+ KY+ +PA + PE +++R +AV Sbjct: 247 NDAIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMASVSRRIPAELTPEKREEVRELAV 306 Query: 288 QAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 ++++ LGC G++R+D + + +++ NEINT+PG S+ LW+ G+ Y +L+ R+ Sbjct: 307 RSFKALGCNGVSRIDFMIDADTDKLYFNEINTIPG----SLAFYLWEPVGVPYKELLDRM 362 Query: 347 IELALERHAADNALKTTM 364 I+LAL+R + +L T Sbjct: 363 IQLALKRERTEESLTFTF 380 >UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0A6_ERYRH Length = 338 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 116/349 (33%), Positives = 195/349 (55%), Gaps = 15/349 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL+V +VFG ++EH++S+ SA ++++ K +FD V L I K G+W+ + + ++ Sbjct: 1 MNKLQVALVFGSINSEHDISVASAASVLEHFPKEKFDCVPLYIGKDGKWYTGNYTLDMMQ 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ L I A + LP VDV F ++HG +GE G +QG+L Sbjct: 61 SNKLE------GHRELYLQFNYDRPGFIYADDQSLLP-VDVAFLMLHGRMGEGGQVQGLL 113 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + AN+PF G DVL+SA CMDK T + AG+++A + +T N +I F +VE Sbjct: 114 KCANIPFTGCDVLSSALCMDKGFTHIICEAAGIDMAAYQLITHIN--DIDFEKVE----Y 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-P 239 P VKP+ +GSS GVS V + ++ A AFEFD +V++E IKG E+ +L D Sbjct: 168 PCIVKPSREGSSFGVSYVRNYDELLNACLFAFEFDSRVLIEAYIKGTEVGLGILKTDQEL 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 S ++ ++ + + + KY + + + + +++ + A+ L CA + Sbjct: 228 IVSEVDQVNVSGEVFDFQEKYHPH-ATETLPVSTFPESVRKEVQRLGELAFNVLDCAQFS 286 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 R+D F+T ++ + +NE+NT+PGFT+ S YP + +G+ Y +LIT++IE Sbjct: 287 RLDFFVTEDHRIFLNEVNTIPGFTSSSRYPGMLDRAGVSYPELITKMIE 335 >UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteobacteria RepID=DDL_XANAC Length = 318 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 108/350 (30%), Positives = 164/350 (46%), Gaps = 52/350 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG S+E EVSL S N++DA+ D + Sbjct: 18 RVAVLLGGTSSEREVSLNSGGNVLDALRARGVDAQPVD---------------------- 55 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHG--TLGEDGSLQGMLRV 122 + D +F ++HG GEDG +QG++ Sbjct: 56 ---------------------GIPALAKALVAQQFDRVFNVLHGHNGGGEDGIVQGLMEA 94 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ GSDVL SA MDK TK++ GL+ + L ++GLP+ Sbjct: 95 FGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGASAE-DIHAAARQIGLPI 153 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 VKPAN+GSSVGVS+V + Q AV LA +D +++EQ I+G E+ AVLG+ A Sbjct: 154 IVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGALLMEQLIEGDELTVAVLGD---TAL 210 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 IV +Y Y+ KYI +D + + P + E +IR +A+ A++ GC G RVD Sbjct: 211 PSIRIVPKGQWYDYNAKYIADD-TQYLCP-GLEGEAEAQIRQLALDAFRAAGCRGWGRVD 268 Query: 303 VFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 V ++ + E+NT PG T+ S+ PK + G+ + L+ R++E L Sbjct: 269 VMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWRVLEQTL 318 >UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira biflexa serovar Patoc RepID=DDL_LEPBA Length = 349 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 99/356 (27%), Positives = 166/356 (46%), Gaps = 13/356 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K+++ ++FGG S EH +S++S+ I ID+ ++DV + I+ G++ + S + Sbjct: 1 MSKIKIALLFGGISGEHIISVRSSAFIFATIDREKYDVCPVYINPNGKFWIPTVSEPIYP 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + A +Q G F +HG GEDG +QG L Sbjct: 61 DPSGKTEIEFLQEFNKANAIVSPSEPADISQMGFLS-----AFLGLHGGAGEDGRIQGFL 115 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P GS VLAS+ MDK L G+ +APF+ L + + Sbjct: 116 DTLGIPHTGSGVLASSLAMDKYRANILFEAMGIPVAPFLELEKGKTDPRK-TLLNLSFSY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG----- 235 P+F+KP GSSV + E+ VD F D +V+V++ + G E+ VL Sbjct: 175 PVFIKPTLGGSSVNTGMAKTAEEAMTLVDKIFVTDDRVLVQKLVSGTEVSIGVLEKPEGK 234 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 NP EI S+F+ ++ KY + ++ + PA + E+ ++ ++ ++ LGC Sbjct: 235 KRNPFPLVPTEIRPKSEFFDFEAKYT-KGASEEITPAPVGDEVTKTLQEYTLRCHEILGC 293 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G +R D + + + E NTLPG T S+ P+ +A G+ D+ T L+E++L Sbjct: 294 KGYSRTDFII-SDGVPYVLETNTLPGMTGTSLIPQQAKALGINMKDVFTWLLEISL 348 >UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AC0 Length = 357 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 123/356 (34%), Positives = 200/356 (56%), Gaps = 9/356 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++ ++FGG S EH++SL SA ++ I + +++V+ +GI ++G+W + Sbjct: 1 MAKIKAAVIFGGTSREHKLSLASAAEVIRNIPEDKYEVICIGITRKGRWLYFPGDVEDIP 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPL-PTVDVIFPIVHGTLGEDGSLQGM 119 + P TS P +I +NG+ + +DV+FP+V G G DG++QG+ Sbjct: 61 TGEWEQ---DPDCTSAIISPDPLHRGIILIENGEAVVRKIDVVFPVVMGKHGADGTIQGL 117 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS--FAEVESK 177 L ++ +P+VG VLA+A+CMDK ++ D + A + +T+ I E+ + Sbjct: 118 LDLSGIPYVGCGVLAAASCMDKSHIHMVMDDYDIATADWRIITQREISEIDKRCHEIAGE 177 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 LG PL VKPA G+S G K Q AV +AF D+KV+VE+ + GR++E AV G D Sbjct: 178 LGFPLIVKPAKSGTSAGTGKADDLAQLIAAVKVAFSNDNKVVVEKYVSGRKMEAAVFGYD 237 Query: 238 NPQASTCGEIVLTSDFYA-YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 P ++ GEI+ Y + DG K +PA I+ E+ IR AV+AY+ +GC Sbjct: 238 TPFSTYIGEILDPDRVYDPTEVNQSTGDGLK--IPADISDELQASIRETAVKAYKAMGCK 295 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+AR+D FLT + +++N+I T PG S++PKL + G+ + D + L+E A++ Sbjct: 296 GLARLDFFLTDDGRLLLNKIGTSPGLRKNSVFPKLMEHMGISHEDFVDMLLEQAID 351 >UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteobacteria RepID=DDL_BURPP Length = 313 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 102/349 (29%), Positives = 163/349 (46%), Gaps = 48/349 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ + + D Sbjct: 11 KVAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFD---------------------- 48 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P+ LA + + + F +HG GE+G +QG L Sbjct: 49 ------PAERPLAALKEEGFVR---------------AFNALHGGYGENGQIQGALDFYG 87 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 + + GS VL SA +DK TK + + G+ PF + R + + E+ +KLGLPLFV Sbjct: 88 IKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYEARSKEIVAKLGLPLFV 147 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQAST 243 KPA++GSSV V KV S + A+ A ++D V+VE+ ++ G E + GN + Sbjct: 148 KPASEGSSVAVIKVKSADALPAALIEAVKYDKIVVVEKSVEGGGEYTACIAGNLD---LP 204 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 IV +FY Y KYI D + ++P +A + +++ +A +A+ LGC R D Sbjct: 205 VIRIVPAGEFYDYHAKYIAND-TQYLIPCGLAADEEARLKVLARRAFDVLGCTDWGRADF 263 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L + E+NT PG T+ S+ PK +A G+ Y +L+ ++ L L+ Sbjct: 264 MLDADGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVGVLALTLQ 312 >UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales RepID=DDL_BACHD Length = 305 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 171/352 (48%), Gaps = 49/352 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG SAE EVSL S K I++A+ + +V+ + Sbjct: 1 MKIAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPD----------------- 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 VD++F +HG LGEDG +Q +L + Sbjct: 44 --------------------------QVRDLVDLDVDLVFIGLHGRLGEDGKVQALLDLL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 N+P+VG+ V SA MDK K AG+ +A + L +F + P+ Sbjct: 78 NIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYDANAFNFTGT---YPVV 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQAS 242 VKP +GS++G++ +EE+ ++ AF D +++E+ I G E+ AVLGN ++ Sbjct: 135 VKPNQEGSTIGLTVAETEEELLQGIEEAFRHDDTILIEEFIAGTEVTVAVLGNKGEERSL 194 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EIV + Y Y++KY ++ +VPA I+ E ++ AV+A+Q LGC +RVD Sbjct: 195 PVVEIVPKNKLYDYESKY-APGMSEHIVPARISEEHTAYVQQAAVRAHQALGCDVYSRVD 253 Query: 303 VFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + VI ++NTLPG T S+YP + G+ Y ++I + L+L++ Sbjct: 254 FIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQTFVNLSLKK 305 >UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT22_9FIRM Length = 390 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 121/375 (32%), Positives = 201/375 (53%), Gaps = 31/375 (8%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V +VFGG S EHEVS+ + +++ +DK +F+ + + I K+G+++ + +L Sbjct: 3 NVAVVFGGISVEHEVSVITGLQVIENLDKEQFNPIPIYISKEGRFYSGE----MLKDFKT 58 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQ-----------NGQPLPTVDVIFPIVHGTLGED 113 AT + +P K + L + +D IFP +HGT GED Sbjct: 59 YKEGKYREATEVFIIPQKGDRFLYSTKVVGGIFKKTHTENYIYARIDAIFPALHGTFGED 118 Query: 114 GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI-SFA 172 G++QG+ N+P+VG VLA A MDK + K + + + + + R+ ++ S Sbjct: 119 GAIQGLFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPVVDYTYFYRSELKDLQSVL 178 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIEC 231 + KLG PL VKPAN GSS+G+SKV + A+++A +D K+IVE+ + REI Sbjct: 179 KKCEKLGYPLIVKPANLGSSIGISKVKDTLELTKALEVASNYDKKIIVEKCLTDHREINV 238 Query: 232 AVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDGA--------KVVVPAAIAPEINDKI 282 AVLG+ D+ + S C E + D Y KY+ K +PA ++ E+++KI Sbjct: 239 AVLGDQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMASQENQKKKLPADLSKEVHNKI 298 Query: 283 RAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 +A ++++ + G++R+D L +EV +NEINTLPG S+ L++ GL + DL Sbjct: 299 CQLAKESFKAIDATGVSRIDFLL-KNDEVYVNEINTLPG----SIAFYLFEVEGLSFKDL 353 Query: 343 ITRLIELALERHAAD 357 +T+L+E+A++R Sbjct: 354 LTKLLEIAIKRFKEK 368 >UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ellin514 RepID=B9XIG4_9BACT Length = 304 Score = 326 bits (836), Expect = 8e-88, Method: Composition-based stats. Identities = 100/354 (28%), Positives = 161/354 (45%), Gaps = 56/354 (15%) Query: 1 MEK-LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M K L++ ++ GG SAE EVSL++ + A+ V L K+ +W + + Sbjct: 6 MSKILKITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELDP-KEKKWSLPAGTE--- 61 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 V+F +HGT GEDG++Q Sbjct: 62 -----------------------------------------VVFLALHGTYGEDGTVQRE 80 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +P+ G D AS DK +TK+ +AG+ A F+ + A Sbjct: 81 LDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRS------AVWPMGWQ 134 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+ +KP QGSSVG+ V ++ + A +D +V++E+ I GRE +LGN Sbjct: 135 PPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEALRYDTQVLMEERILGRETTVGILGN--- 191 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + E+ + Y Y KY + + PA + +I+ A+ A++ +G + Sbjct: 192 RPLPIVEVRPKAGNYDYQNKYT-AGATEYLCPAPFDEAVTARIQEAALGAFKAIGGRDYS 250 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 RVDV + P E V+ E+NTLPG T S+ PK A+G+GY +L ++++LAL+R Sbjct: 251 RVDVMVRPNGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVDLALKR 304 >UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BAK0_9FIRM Length = 320 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 115/336 (34%), Positives = 187/336 (55%), Gaps = 32/336 (9%) Query: 28 VDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQL 87 + +DK ++++ L+GI K G+W++ + L+ D A Sbjct: 1 MKHLDKDKYEITLVGIAKDGKWYILKQEDNDLSKDTWLDGAEVVEGV------------- 47 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 L + DV FP++HG GEDG++QG+ +A LP+VG V AS+ACMDK K++ Sbjct: 48 -----FNLLRSQDVAFPVLHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKV 102 Query: 148 LRDAGLNIAPFITLTRANRHNISFAE------------VESKLGLPLFVKPANQGSSVGV 195 AG+ + + + N + E + +LG+P F+K + GSSVG Sbjct: 103 FESAGIPQVKSVYVKKRNDGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGC 162 Query: 196 SKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + EE ++ A ++D ++VE+ + E+E AVLGND+ S G+I+ +FY Sbjct: 163 YRCDKEEDLMAKLEEAAKYDTHIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYT 222 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVIN 314 +++KY D + +K +PA + EI ++IR AV+A++ + G++RVD FL + N V +N Sbjct: 223 FESKYEDAE-SKTCIPAKVDEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLN 281 Query: 315 EINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 EINTLPGFT+ISMYP+L + G Y++L+ +LIE+A Sbjct: 282 EINTLPGFTSISMYPQLMEDYGYSYSELLDKLIEIA 317 >UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas RepID=DDL_MARMS Length = 317 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 162/363 (44%), Gaps = 52/363 (14%) Query: 1 MEKL----RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 M K + +++GG+SAE EVSLQS + + + + VV L + Sbjct: 1 MSKTLKESVIAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDL------------- 47 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 + +D D+ F +HG GEDG + Sbjct: 48 -------------------------YGSNAALDPIVQLQSIEFDLAFIALHGGEGEDGRV 82 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 Q +L + P+ GS LA MDK +TKR G+ +++ ++ +E Sbjct: 83 QALLEMFGKPYTGSSPLACGLAMDKVLTKRFWNGIGIPTPAYLSFVDHANADL----IEE 138 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 ++ P+ VKP+ +GS++G++K + + A+ A E+D ++VE+ I G E V+ + Sbjct: 139 QMSYPVIVKPSREGSTIGINKAMNRAELDDALIKALEYDSDILVEEFIDGPEFTVTVIDD 198 Query: 237 DNPQASTCG--EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 A + Y Y+ KYI +D + ++P + + ++++ +A+ AY++LG Sbjct: 199 ---VAYPPIGLKPAPDHKLYDYEAKYIADD-TEYLLPCGLDEDDENELQMLALDAYRSLG 254 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 C G RVDV + E+NT PG T+ S+ P + G+ Y L+ ++ + A ++ Sbjct: 255 CFGWGRVDVMRDQAGVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASLVEKIAQNAWDKV 314 Query: 355 AAD 357 + Sbjct: 315 GRN 317 >UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteriaceae RepID=C6X2F8_FLAB3 Length = 339 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 103/354 (29%), Positives = 165/354 (46%), Gaps = 28/354 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K V +V GG S E+ VSL+S + I D++D+ ++V + + K + + D Sbjct: 12 MNKKNVAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKDEWYFLDDREQ---- 67 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +VP ++ +G + DV F I+HG GE+G LQ Sbjct: 68 -----------------KVPVNKADFSVNLDSGFDV-KFDVCFNIIHGKPGENGELQAYW 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + G SA +K T +L G+ A + + + I + L L Sbjct: 110 DTIGQKYTGCGFYQSALTFNKKDTLAVLSKYGIPAAKSVYIRKGEA--IDEDGIIEDLKL 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNP 239 PLFVKP GSS+G+SKV + ++ A+D AFE D +V++E + G E+ V+ N Sbjct: 168 PLFVKPNQSGSSLGISKVKDKSEFQKAIDFAFEQDDEVLIESFLDGMEVSVGVVDFNGES 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EIV +F+ Y+ KY E ++ + PA I E K+ IA +AY +LG +G + Sbjct: 228 IVLGITEIVSHKEFFDYEAKY--EGASEEITPARIDDETRQKVEEIAKKAYNSLGMSGFS 285 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 R + + + E+NT PGF+ S+ P+ + G+ DL +E AL + Sbjct: 286 RSEFIIMG-GTPYMLEMNTNPGFSPASILPQQAKIYGISIKDLCGNEVEKALAK 338 >UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus RepID=C7RG73_ANAPD Length = 345 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 113/354 (31%), Positives = 190/354 (53%), Gaps = 11/354 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + V I+ GG S+EH++SL+SA NI +++ ++ + L+ I+K+G + ++ D+ Sbjct: 2 INVYILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGA---YSEAFDKIDTDN 58 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + + K + + + ++ P VHGT GEDG++Q +L V Sbjct: 59 EFDLVKE-----VKENKTKSIADFLTCLSKEDYSKT-IVIPAVHGTYGEDGTIQALLDVI 112 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + ++G+ +L+SA CMDK + + L+ A ++ + + ++GLPL Sbjct: 113 GIAYIGNGLLSSAICMDKVTSNDIFEKNKLSQAKYLYTNKDGFDSDFADRCIEEIGLPLI 172 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP+ GSSVGVSKVT++ + A D A ++D KV+VE+ I+G+EIE AV+G NP S Sbjct: 173 VKPSANGSSVGVSKVTNKNELLAAGDEALKYDKKVLVEELIEGQEIEFAVVGYMNPDVSE 232 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 + F YD KY + K +P + E ++ + +AY+ GC G ARVD+ Sbjct: 233 PAAYISDHTFLDYDAKYFSKS-TKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVDI 291 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQAS-GLGYTDLITRLIELALERHAA 356 FL +N +NEINT PGFT S + +L + +++++ RLI+ ER Sbjct: 292 FLGKDNNFYVNEINTFPGFTPSSFFARLCELMYNESFSEVLDRLIKDGFERWQR 345 >UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXY6_HALNC Length = 324 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 95/347 (27%), Positives = 160/347 (46%), Gaps = 48/347 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG S+E +SL+S + ++ A+ ++ DV + + + Sbjct: 9 RVLLLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRRD------------------ 50 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 L + D F I+HG GEDG +Q +L + Sbjct: 51 ---------------------FLPELLAAHQAKPFDRAFIILHGRGGEDGQIQAVLELLG 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G+ + SA MDK KR+ R GL P+ + I LGLP+ V Sbjct: 90 IPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVV----ATEIEAHRALDSLGLPVMV 145 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP +GSSVGV+KV +Q A A A + V++E+ I+G E ++LG +A Sbjct: 146 KPVAEGSSVGVAKVDQPDQLAAAFREAARYGQ-VMMERYIRGGEYTVSLLGG---RALPV 201 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + DFY +D KY+ D + +P+ ++ E ++AIA++A++ +G +G RVD Sbjct: 202 IRLSTPHDFYDFDAKYLAND-TEYTIPSGLSAEEESAMQAIALKAFEQIGGSGWGRVDFM 260 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + + E+NT+PG T+ S+ P +A G+ +L ++ L Sbjct: 261 RDEHGQNWLIEVNTVPGMTDHSLVPMAARAVGIEIEELCLGILAQTL 307 >UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MT57_9BACT Length = 331 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 111/355 (31%), Positives = 173/355 (48%), Gaps = 29/355 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQ-WHVSDASNYLL 59 M++L + ++ GG S+E E++LQSA I A+D +++D+ L ID G+ WH + Sbjct: 1 MKRLNIALMAGGDSSEREIALQSAAQIASALDPAKYDITL--IDLHGRDWHYTSPDGRQW 58 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D D ++HGT GE+G LQG Sbjct: 59 QVDKNDFSITIDGEH----------------------KAFDYALILIHGTPGENGRLQGY 96 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L + +P+ + +S DK TKR + + G+ +A R +R I E+ LG Sbjct: 97 LDMMGIPYSSCSMTSSVVTFDKITTKRTVAEFGIPLARGFFFGRDSR--IDPKEIVRTLG 154 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDN 238 LP+FVKP GSS GV+KV SE AV AF ++++E+ I+GRE+ C +L Sbjct: 155 LPVFVKPNASGSSFGVTKVKSEADILPAVAEAFTESDEILIEECIQGREMGCGMLIAKGR 214 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 EIV +F+ Y+ KY + + PA IAPEI ++ + AY+ C G+ Sbjct: 215 EYIFPITEIVSKKEFFDYEAKYT-AGCSDEITPADIAPEIKAELNRLTALAYKACRCRGV 273 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 RVD +TPE + + EIN++PG + S+ PK + +G+ +L +IE +R Sbjct: 274 VRVDFIVTPEGKPYLIEINSIPGMSGGSIVPKQVREAGMTLGELYDLIIEDTYDR 328 >UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacteria RepID=DDL_MARAV Length = 325 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 167/348 (47%), Gaps = 51/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV + GG SAE EVSL+S K ++ A+ + D V I LL D Sbjct: 24 RVAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAVGRDI-----------QGCLLRTVDE 72 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P D +F +HG GEDG+LQ +L A Sbjct: 73 --------------------------------PDFDRVFIALHGRGGEDGTLQAILGQAG 100 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS+VLASA MDK TK + GL F +T + + LG PL V Sbjct: 101 IPYTGSEVLASALAMDKLRTKYVFEGCGLPTPAFRAMTSVGEAEG----IVAALGTPLSV 156 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA++GSS+G+ KV S + A A + A D V+VEQ I+G E ++L + +A Sbjct: 157 KPAHEGSSIGIRKVNSAAELAEAYEAAARLDDLVLVEQWIEGPEFTVSLLQD---KALPA 213 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + FY YD KY+ +D + +P +AP+ +++ +A+ A++ LGC RVD+ Sbjct: 214 IGLSTDHAFYDYDAKYLADD-TRYRIPCGLAPDDELRLQHLALDAFRVLGCRTWGRVDIM 272 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 E + E+NT+PG T+ S+ P +A+G+ + +L+ R++ L Sbjct: 273 QDRAGEFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILRDTLA 320 >UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteobacteria RepID=B3PCL8_CELJU Length = 328 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 165/353 (46%), Gaps = 57/353 (16%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RVG+++GG SAE E+SLQS ++ A++ + D V + + G ++D Sbjct: 18 RVGVLYGGLSAEREISLQSGAAVIAALEDAGIDHVAIDV---GDNVIADI---------- 64 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +D F ++HG GEDG +Q +L + Sbjct: 65 ------------------------------QAANIDRAFLMLHGPGGEDGRIQALLEFLH 94 Query: 125 LPFVGSDVLASAACMDKDVTKRLL------RDAGLNIAPFITLTRANRHNISFAEVESKL 178 +P+ GSDV +SA MDK TK L L F LTR F +L Sbjct: 95 IPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVLTR----ESDFVAELKRL 150 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G + VKPAN+GSS+G+S+V + E A A ++ V+ E+ I G E A+L + Sbjct: 151 GGEVMVKPANEGSSIGMSRVKTAEDLQAAFVKATDYQGSVLAERLIVGAEYTVAIL---D 207 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +A + FY ++ KYI ED + + P ++ E +++ +A+ A+ LGC G Sbjct: 208 GEALPPIRLETDHSFYDFNAKYIAED-TRYICPCGLSAEKEQELKQLALTAFNVLGCRGW 266 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 RVDV + + E+NT PG T+ S+ P +A GL +T+L+ ++ +L Sbjct: 267 GRVDVMADAQQNFYLLEVNTAPGMTSHSLVPMAAKAVGLSFTELVVTILRASL 319 >UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M663_9BACT Length = 321 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 105/357 (29%), Positives = 164/357 (45%), Gaps = 47/357 (13%) Query: 1 MEKL-RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M +L ++ +++GG S E EVSL S + + A+ + ++ L ID G V +A Sbjct: 1 MSELQKIVVLYGGNSPEREVSLVSGQAVEKALKSAGYETEL--IDLTGPEKVFEALK--- 55 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ FP++HG+ GEDG LQ Sbjct: 56 -------------------------------------TPCDLFFPVLHGSWGEDGRLQAA 78 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ P+VGS LAS CMDK +K L AGL+ + + + + + + Sbjct: 79 LDLSGRPYVGSGPLASGLCMDKWASKALFDRAGLHTPKGVLVRQKDGTGDLPGLLRALER 138 Query: 180 L-PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE-FDHKVIVEQGIKGREIECAVLGND 237 L VKP GS+V S V+ E+ A++ A+E +VE+ I GRE+ A+ + Sbjct: 139 YGKLIVKPNCGGSTVATSVVSCSEELLPALNAAWEQKSGGALVEEFIPGRELTVAMWDSG 198 Query: 238 -NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 P+A EI+ S FY Y KY D ++ PA ++ E + AV A++ +G Sbjct: 199 SGPEALPAVEILPASGFYDYQAKYTD-GASRYESPARLSGEEARALSEAAVAAWRAVGLR 257 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 R D L P+ E V+ EINT PG T+ S+ P +++G+ D ++RL A R Sbjct: 258 DYGRADFRLPPDGEPVLLEINTAPGMTSHSLVPMAAKSAGMELPDFLSRLARRAWSR 314 >UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteobacterium KB13 RepID=B6BWF0_9PROT Length = 299 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 166/349 (47%), Gaps = 52/349 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M ++ ++ GG S E ++S++S + A+ ++V L+ Sbjct: 1 MLIKKIALLSGGDSEERDISIKSGLAVYQALKNLNYEVSLID------------------ 42 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 P T L L D F +HG GEDG +Q +L Sbjct: 43 ----------PINTDLCS-----------------LVNYDAAFICLHGKNGEDGKIQSLL 75 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +PF GS AS M+K +K + + L F+ L N+ N+ + ++ + L Sbjct: 76 ELLKVPFTGSASTASMLAMNKYYSKLVWNNHALITPKFLIL---NKTNLDYKKIITHLSD 132 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P VKP++ GSS G++ V +++ +A A ++D VI E+ I+GRE ++LGN + Sbjct: 133 PFIVKPSSSGSSFGINLVKNKDDLILAFTDASKYDPTVIAEEFIEGREFTVSILGN---K 189 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + EI ++FY Y+ KY+ + P + PE+ +K+ IA+ A+ ++GC+G R Sbjct: 190 SLGVLEITTKNEFYDYNAKYVS-NETIFSKPTDLNPEVLEKMENIALSAFISIGCSGWGR 248 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 VD + + + E+NT+PG T+ S++P + +GL + + +++L Sbjct: 249 VDFMMDKKFNFYLIEVNTVPGMTDHSLFPLAARNAGLNFEQTVQHIVDL 297 >UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIX2_HALO1 Length = 330 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 165/344 (47%), Gaps = 48/344 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RVG+++GG S+E EVSL+S ++ A+ + ++ V + W + LL Sbjct: 25 RVGVLYGGPSSEREVSLESGAGVLAALQERGYECVGVD------WTPGSSLPALLVEH-- 76 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 V+V++ +HGT GEDG++QG+ Sbjct: 77 ---------------------------------RVEVVWNALHGTYGEDGAVQGLCACMG 103 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP G+ + ASA MDK ++KRL G+ + L A V ++ LPL + Sbjct: 104 LPCTGASIAASAVAMDKILSKRLFESVGVPTPQWRVLRP---DEGDTAAVFAEWALPLVI 160 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSSVG+S V ++ A+ A V+VE+ I+G E+ +L + + Sbjct: 161 KPAYEGSSVGLSLVRERDEIGPALKRARAGQGPVLVERYIEGVELSVGILAD---RVLGA 217 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EI TS Y Y+ KY+ +D A +VP + D A+ ++AY LGC G AR D+ Sbjct: 218 VEIRPTSGLYDYEAKYVRDDTA-FLVPPELERGHIDTCEALGLRAYHALGCTGYARADLR 276 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + + I E+NTLPG T+ S+ PK+ +G+ Y L R++E Sbjct: 277 VQADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCERILE 320 >UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root RepID=B0NI26_EUBSP Length = 356 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 94/365 (25%), Positives = 161/365 (44%), Gaps = 20/365 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGI------DKQGQWHVSDASNY 57 +++ ++ GG S E +VSL S I + + LL + D V D Sbjct: 1 MKIIVLAGGLSPERDVSLISGAGICRTLREKGHKAYLLDVFFGLPYDPDKLEEVFDLPGG 60 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 L + P +L + D+ F +HG++GE+G LQ Sbjct: 61 GLEIAEGIKTT-TPDLEALRASRPDQSDCYLGPNVIDLCRIADITFMGLHGSVGENGKLQ 119 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 + + + G + A MDK V K++ + +G+ +L R + K Sbjct: 120 ATFDILGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGTSLNRNTKDTP-----LEK 174 Query: 178 LGL--PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE--FDHKVIVEQGIKGREIECAV 233 LG PL +KP + GSS+GV V +EE+Y A+ +F+ + +V++E IKGRE C++ Sbjct: 175 LGYYLPLVIKPCSGGSSIGVYIVHTEEEYREAIRCSFDVNHEDEVVIEPYIKGREYACSI 234 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + +A EI+ + Y+ KY D ++ P ++ + KI+ +A++ L Sbjct: 235 IAG---KALPLIEIIPKDGIFNYENKYQDGGAQELCPPVSLDDKTQAKIQRAGEKAFRVL 291 Query: 294 GCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 AR D + + + E+N LPG T S+ PK +A G+ Y DL +IE +++ Sbjct: 292 HMDVYARADFIVDETDGKFYCLEMNGLPGMTPASLIPKSARAIGVDYGDLCELIIEESMK 351 Query: 353 RHAAD 357 D Sbjct: 352 TRYQD 356 >UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidiphilum infernorum V4 RepID=DDL_METI4 Length = 303 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 154/353 (43%), Gaps = 58/353 (16%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 + ++ GG S E E+SL++AK + DA+ +++ + + Sbjct: 8 HIAVLKGGPSEEREISLRTAKAVEDALSSLGYEISSIDVT-------------------- 47 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 T ++P E + F +HG+ GEDG +Q +L Sbjct: 48 ---------TEKFEIPRDAE----------------ICFLCIHGSFGEDGQIQRLLMRRG 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +PF GSD +S DK +K L G+ PF + + P + Sbjct: 83 IPFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPFCVVGDGKKIPFD---------PPYVI 133 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP+ QGSS+G+ V ++ A+ + ++DH V+ E I G+E+ +L + +A Sbjct: 134 KPSRQGSSIGIEFVYDIKELDQAIKKSTQYDHVVLAEALITGKELTVGIL---DGKALPV 190 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EI FY Y KY + + PA + + ++ A+ A+ LGC+ RVD+ Sbjct: 191 VEIKPKEGFYDYHHKYT-KGASTYFCPAPLTVDQTSAVQKTALDAFNVLGCSVYGRVDII 249 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 L+ + EINT+PG T S++P +ASG+ + L +++E++ R A Sbjct: 250 LSDNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKILEISYLRWKAH 302 >UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermaceae RepID=Q2S0H9_SALRD Length = 434 Score = 319 bits (819), Expect = 7e-86, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 191/386 (49%), Gaps = 41/386 (10%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 E L+VGIV GG + EHEVS+ +A A+D+ R+ V + + K G W+ DA + Sbjct: 20 EPLQVGIVLGGVAPEHEVSVITALQAAAALDRDRYTPVPIYVAKDGTWYTGDALLEVEAY 79 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLID--------AQNGQPLPTVDVIFPIVHGTLGED 113 D + +LA P H L D Q +DV+ +HG GE+ Sbjct: 80 RDLDALREDALPVALAPTPYGHLELLEDRAPGILKRLQRPALRRRIDVMLLGLHGGPGEN 139 Query: 114 GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNIS 170 G +QG+ N+P+ + V SA MDK ++KR+ R AG+ + F+ L R + Sbjct: 140 GGVQGLCETFNVPYTSAGVFGSALGMDKVMSKRVCRQAGIPVVDFVALREGEWAGREAAA 199 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REI 229 E E+ L PL VKPA GSS+G+++V + + A++ A +D KV+VE+ ++ REI Sbjct: 200 LDECEATLDYPLVVKPARCGSSIGIAQVNTRAELDAAIEDALRYDDKVVVEKAVEALREI 259 Query: 230 ECAVLGNDN-PQASTCGEIVLTSD--FYAYDTKYIDEDGA-------------------- 266 C+VLG+ + S E V + D + KY+ EDG Sbjct: 260 NCSVLGDGHEATPSVLEEPVPSDDDAVLTFQDKYMREDGEAAKAEGGTKSAESSPEGMAA 319 Query: 267 -KVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTN 324 +VPA ++ E + I+ +AV+ + CAG+ R+D + V NEINT+PG + Sbjct: 320 QDRIVPANLSDERTETIQDLAVRIFHQFECAGVVRIDFMIDESTGRVYFNEINTIPG--S 377 Query: 325 ISMYPKLWQASGLGYTDLITRLIELA 350 S Y LW+ SG+ + L+ RL+ +A Sbjct: 378 FSFY--LWEPSGVSFDALVDRLVTIA 401 >UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacteriales RepID=C7PEF5_CHIPD Length = 329 Score = 319 bits (819), Expect = 9e-86, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 171/354 (48%), Gaps = 29/354 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +V GG S E+ +S+QSA I +D S+++V + + + G W+ + + L+ D Sbjct: 2 KKNIALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDG-WNYTGSDGQLIAVD 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + D +F +HGT GEDG LQG + Sbjct: 61 RNDFTLTINGNKVI----------------------FDAVFIGIHGTPGEDGRLQGYFEM 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGL-NIAPFITLTRANRHNISFAEVESKLGLP 181 +PF ++ SA +K +++ G+ N++ + + + + +L LP Sbjct: 99 LGIPFTSCGMVTSALTFNKSYCNKVVASLGVVNVSKSVHIFK--DQPFDIQAILQELKLP 156 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDNPQ 240 +FVKPA GSS+G+SKV + E+ A A++ AF D ++++E+ +KGREI C + N Sbjct: 157 VFVKPAEGGSSIGMSKVNTAEELAPAIEKAFNEDVQILIEEFVKGREITCGLYRSNGAFT 216 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI+ + +F+ Y+ KY ++ V PA EI ++I+ A + Y L C G+ R Sbjct: 217 VLPVTEIISSKEFFDYEAKYTP-GVSREVTPAEAPNEIVNQIQETAKKLYNKLNCRGIVR 275 Query: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +D N + E+NT+PG + S+ P+ +A+G + LIE L + Sbjct: 276 MDFIWEEASNRLFFLEVNTMPGQSENSIVPQQVRAAGKTLQEFYGTLIEECLRK 329 >UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomonadales RepID=DDL_ERYLH Length = 323 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 105/364 (28%), Positives = 169/364 (46%), Gaps = 60/364 (16%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KL V ++ GG + E EVSL S + + A++K V + +D+Q +++A+ Sbjct: 6 KLHVVVLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAP------ 59 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 DV+F +HG GEDG++QGML + Sbjct: 60 -------------------------------------DVVFNALHGVPGEDGTVQGMLDL 82 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ S + S +DK++TK+ L G+ + + + + L P Sbjct: 83 MGVPYTHSGLATSVIAIDKELTKQQLVPRGIPMPGGRIVQSEDLYQQD------PLARPY 136 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLA----FEFDHKVIVEQGIKGREIECAVLGNDN 238 +KP N+GSSVGV+ VT E Y + ++ +++ E I+GRE+ AV+G Sbjct: 137 VLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFRELLAEPFIRGRELTTAVVGG-- 194 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 QA E+ S FY +D KY D + V PA I PEI + A++A++ LGC G Sbjct: 195 -QALAVTELKPKSGFYDFDAKYTD-GMTEHVCPADIPPEIEALCKKYALEAHRILGCRGT 252 Query: 299 ARVDVFLTP---ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +R D ++ + + E NT PG T +S+ P+ +G+ Y DL+ ++E ALE A Sbjct: 253 SRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSYEDLVEAIVEAALEHFA 312 Query: 356 ADNA 359 A Sbjct: 313 AKTG 316 >UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATM1_RUBXD Length = 318 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 166/360 (46%), Gaps = 51/360 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R+ ++ GG S E +VSL + + + A+++ +V + ++ Sbjct: 3 RLAVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVE---------------ETTTE 47 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 I L P+A +F +HG GEDG++Q +L Sbjct: 48 RLIELEPAA----------------------------VFVCLHGPGGEDGTVQALLETLG 79 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS----FAEVESKLGL 180 +P+ GS L+S CMDKD KR L AGL F T R + + LG Sbjct: 80 IPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMNEMGAAAALNVAADSLGY 139 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDN 238 PL VKPA +GSS G+S+V E+ AV AF +D K+++E+ ++GRE+ +L + Sbjct: 140 PLVVKPAREGSSFGLSRVERPEELLDAVYEAFGYDAKILLERWVEGREVSVPILEPAGEA 199 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P+A EI Y + KY +PA + P ++ A+ Y+TLGC+G Sbjct: 200 PRALGLVEIRPREGAYNFQAKYT-PGMTDFAIPAELPPGTASRLEETALAVYRTLGCSGF 258 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 ARVD + E + ++ T+PGFT S +P +A+GL + L+ +++ AL AA Sbjct: 259 ARVDTIVEGE-TPQVLDVKTIPGFTETSTFPLAAEAAGLSFERLVEIILDSALRTEAAPK 317 >UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=DDL_DICNV Length = 310 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 159/350 (45%), Gaps = 53/350 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGI-DKQGQWHVSDASNYLLNADD 63 +V +++GG S+E E+SL + + A+ + D LL D W + D Sbjct: 9 KVAVLYGGNSSEREISLIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDE--------- 59 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 F ++HG GEDG +Q +L+ Sbjct: 60 ----------------------------------HFSRAFVMLHGRGGEDGEIQAILQWL 85 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS VLA A MDK V K++ + AGL + + +T +R ++ + Sbjct: 86 GIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPESRFETLVEQLHCQ---DFV 142 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KPA +GSSVGVS+V ++EQ A A+ A K++ E I GRE+ ++ N Sbjct: 143 IKPALEGSSVGVSRVKNQEQLAAAIPFAGGARAKIMAEPWIVGRELTYGIV---NDTVLP 199 Query: 244 CGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EIV DFY YD KY + + + PA I ++ + R IA A+Q +G G RV Sbjct: 200 AIEIVAGNDHDFYDYDAKYHAAN-TQYLCPAPIDAALDARCREIAFAAFQAIGARGWGRV 258 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 D+ + +N + EIN +PG T S+ P Q G+ ++ L+ ++ L Sbjct: 259 DMIVDAQNRPYLLEINLVPGMTTHSLVPMAAQQIGMDFSALVQSILAQTL 308 >UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYM6_UNCTG Length = 306 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 173/351 (49%), Gaps = 54/351 (15%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 + ++G+++GG S+E E+S++S K +++ K + +V + +++ Sbjct: 10 LSNKKIGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNR--------------- 54 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +DV + +HG +GEDG++QGML Sbjct: 55 ----------------------------SIAEEIKKEKIDVAYIALHGPMGEDGTIQGML 86 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS + ASAA +DKDV+K++ + A + + L + F V Sbjct: 87 EILGIPYTGSGIFASAASIDKDVSKKIFKYADILTPEWKMLKK-------FGTVPEIKKY 139 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP +QGS++GV+ V ++A AV F++ + ++EQ I+G+E+ VL N + Sbjct: 140 PVVVKPVSQGSTIGVAIVKRPSEFAAAVKEVFKYGDEALIEQFIEGKEVTVGVL---NGK 196 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EIV FY + KY + G++ ++PA I+ E + ++ A + Y+ C + R Sbjct: 197 ALPVVEIVPKGKFYDFKAKYQ-KGGSQHIIPAGISEEAYETVQNYAEKVYEIFKCRAICR 255 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 VD+ + ++ V + E NT+PG T S+ P +A G + L+ ++ E AL Sbjct: 256 VDMIVDRKDRVWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKITESAL 306 >UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6C5_9BACT Length = 334 Score = 317 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 164/370 (44%), Gaps = 64/370 (17%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M + ++ GG S E E+SL+S + A+ + +V+ + + Sbjct: 1 MRTRNIAVLMGGVSPEREISLRSGNAVAKALKDAGNNVICIDV----------------K 44 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D + + +DV F +HG GEDG +Q +L Sbjct: 45 DEDIKELDHK---------------------------EIDVAFIALHGYFGEDGRVQQLL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 V +P+ GS V AS MDK +KR DAGL + L + + + + GL Sbjct: 78 EVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEYFLLKKP-VNLADIEQEIQEFGL 136 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ +KP N GSS+GVS + + V A + + VE+ + GRE +L + + Sbjct: 137 PVVIKPTNGGSSIGVSIIKEGNNFHYHVGEALKCGDEAFVERYVSGREFTIGIL---DSR 193 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAA-----------------IAPEINDKIR 283 + EI + DF+ Y+ KY V+ + + DK + Sbjct: 194 SLPIIEICVADDFFDYNAKYNSGKTRYFVINKTFENKTNILNTPCCDVGFLDAALYDKAQ 253 Query: 284 AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 +A++A+ +GC G +RVD+ L +N+ I E+NT+PGFT S+ P +A+ + +T L Sbjct: 254 ELAIEAHNAIGCRGFSRVDILLDNKNDFYILEVNTIPGFTEKSLLPMAARAADISFTSLC 313 Query: 344 TRLIELALER 353 ++++LA ++ Sbjct: 314 EKIVDLASQK 323 >UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidetes RepID=DDL_FLAPJ Length = 328 Score = 316 bits (810), Expect = 9e-85, Method: Composition-based stats. Identities = 99/351 (28%), Positives = 165/351 (47%), Gaps = 30/351 (8%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + V +V GG S E +SL+S + I++ +DKS++++ + I + V + Y +N D Sbjct: 1 MNVAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEVHILLKDWSVVIEGEKYPINKAD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + DV VHGT GEDG LQ + Sbjct: 61 FSFTK------------------------NGVITKFDVAINTVHGTPGEDGHLQSYWELI 96 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+ G + SA +K T +L + A I L + + I E++ LGLP F Sbjct: 97 DIPYTGCNFYQSALTFNKRDTLSVLTKFNIPKAKSIYLRKGD--VIDGNEIKKALGLPFF 154 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQAS 242 VKP GSS+GVSKV + +Q A++ AF D+++++E + G E+ VL + Sbjct: 155 VKPNQSGSSLGVSKVDALDQLEKALEFAFAEDNEILIESYLNGTEVSVGVLNYKGQTKVL 214 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ +DF+ Y+ KY+ ++ + PA I+ E + A + Y +LG +G +R D Sbjct: 215 GITEILSQNDFFDYEAKYL--GKSEEITPARISKEEEILVAESAKKIYNSLGMSGFSRTD 272 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + EINT PG + S++P+ + + ++ I LAL R Sbjct: 273 FIIM-NGIPHFIEINTNPGLSPQSIFPQQAMFAKMDMPQMLDNEITLALSR 322 >UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular organisms RepID=DDL_BACAA Length = 304 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 176/354 (49%), Gaps = 52/354 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+G++ GG S+E +VS+ + ++ +DK+++++V + ++++ Sbjct: 1 MRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKM---------------- 44 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + +D +HG GEDG++QG L Sbjct: 45 ---------------------------DLIEKAKDIDFALLALHGKYGEDGTVQGTLESL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS++L+S CMDK+++K++LR G+ +I LT+ N KLG PL Sbjct: 78 GIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNFD---ELDKLGFPLV 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP + GSSVGV V +++ ++ FE+D +V++E+ IKG EI C++ Sbjct: 135 VKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIKGEEITCSIFDGKQ---LP 191 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 I ++F+ Y+ KY D + V+ + E+ +++ ++ Y+ L C+ ARVD+ Sbjct: 192 IISIRHAAEFFDYNAKYDDASTIEEVI--ELPAELKERVNKASLACYKALKCSVYARVDM 249 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 + + + E+NTLPG T S+ PK A+G+ Y+ L+ +IE +L + Sbjct: 250 MV-KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRVRKEE 302 >UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VIQ4_9BACT Length = 314 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 99/356 (27%), Positives = 162/356 (45%), Gaps = 49/356 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEK + ++ GG S E EVSL S I A+ + V + Sbjct: 1 MEK--IVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEID------------------ 40 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 K L QN QPL ++F +HG GE+G LQ L Sbjct: 41 ----------------PADYPKLSDLLTAVQNEQPL----LVFNGLHGGSGENGELQAAL 80 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN----ISFAEVES 176 +A + F GS AS MDK ++K + G+ + +I + + ++ + Sbjct: 81 SLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILMREDLLEDYQDVEDYSGFSN 140 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 +LGLP+ VKP + GSSVG+S+V E AV A ++ H V++E+ I GRE+ ++ + Sbjct: 141 QLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSHSVLLEEYIPGRELTVTIIDS 200 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 + A EI +Y Y KY K PA I + ++ A++ ++ G + Sbjct: 201 E---AYPVVEIKPLEGWYDYTNKYT-HGKTKYEAPAQIDDTVAKLLQLYALRLWKAFGLS 256 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G AR+D + E+NTLPG T++S+ P +A+G+ + +L+ ++I +A + Sbjct: 257 GYARIDFRYDGL-KPYFLEVNTLPGMTSLSLTPMAAKAAGMSFQELLQKIIYIAAK 311 >UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Tax=Photobacterium RepID=Q6LQQ8_PHOPR Length = 308 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 171/350 (48%), Gaps = 55/350 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+G++ GG+S+E VSL+S + +V AI+ + + + D Sbjct: 5 MRIGVLLGGESSERSVSLKSGECVVKAIESLGHEAISI---------------------D 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P HI + +D +F +HG +GE G +Q +L + Sbjct: 44 PKHIDVTLMG----------------------FFKLDKVFIALHGGIGESGHVQALLDLL 81 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL--- 180 +P+ GS LASA ++K +K + + L A ++TL + + +++++L Sbjct: 82 KIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHK----HAPIEDIKAQLSSVVC 137 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP +QG S+GVSKV + AV AFE+D +++E I GRE CAVL N + Sbjct: 138 PVVVKPISQGCSIGVSKVDNNADLLEAVITAFEYDDDILIESFIAGREYTCAVL---NGK 194 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 +I + F+ YD K+ + P+ + E ++A+A+ AY LGC G R Sbjct: 195 PLPIVQIR-SEQFFDYDAKFGSQSAT-YHCPSDLTSEQERDMQALALNAYNALGCRGWGR 252 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 VD L +V + E+NT+PG T S++P + +GL + +I+ L++ A Sbjct: 253 VDTILDESGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSLLDSA 302 >UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium RepID=DDL_CLOK1 Length = 297 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 101/349 (28%), Positives = 172/349 (49%), Gaps = 53/349 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++VGI+ GG S+E EVSL S K+I++ +DK+++++V + IDK+ Sbjct: 1 MKVGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVF------------- 47 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + +D F +HG GEDG +Q + + Sbjct: 48 ------------------------------EKVKDIDFAFIALHGKFGEDGIIQSVFQTM 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+ G L S CMDKD++K+LL A +N A +I + + + E K+G P+ Sbjct: 78 DIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICIKSIENIDYDYLE---KMGYPVV 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP + GSSV + + E A LAF +D +V++E+ I+G EI C +L + A Sbjct: 135 VKPNSGGSSVATTIIEKSEDIEEAARLAFNYDEEVMIEKYIEGDEITCCIL---DGTALP 191 Query: 244 CGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 I F+ Y +KY D ++VV + KI I+++ ++ C G RVD Sbjct: 192 ILAIKPNKGSFFDYTSKYADGGSEEIVV--EFEKPLQSKIEEISLKCWELFKCKGYVRVD 249 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + L + + E+NTLPG T S++PK + +T+L+ ++I+ ++ Sbjct: 250 MIL-KDKVPYVLELNTLPGLTKNSLFPKSANGVNISFTELLDKIIQCSM 297 >UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacteria RepID=DDL_PSEA6 Length = 318 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 99/346 (28%), Positives = 169/346 (48%), Gaps = 47/346 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++FGG+SAE EVSL+S + ++ A+ + + Sbjct: 19 KVAVMFGGRSAEREVSLRSGQAVLSALISAGVNAHGFD---------------------- 56 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P + E + Q D + ++HG GEDGSLQG L+ N Sbjct: 57 ---------------PAESELHQLVEQ------KFDRVLIMLHGRGGEDGSLQGALQQMN 95 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G+ VL SA CMDK +K++ + GL A + + + + + +++ S+LG + V Sbjct: 96 MPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNAANCSDIMSRLGDLVMV 155 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSS+G++KV++ +Q A A+ AFE+D KV++EQ I+G E ++L N +A Sbjct: 156 KPAQEGSSIGMAKVSNAQQLAAAIQQAFEYDDKVLLEQFIQGSEYTVSLL---NGEAMPS 212 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + DFY Y+ KY + + P+ + E + +A+ A+ + +G RVD Sbjct: 213 ISMSTPRDFYDYEAKYQS-NTTEYFCPSGLPAEQEGLLARLALDAFDAVAGSGWGRVDFM 271 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + E NT+PG T S+ P + +GL + L ++ A Sbjct: 272 QDMLGQFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQLSLAVLATA 317 >UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FB14_9ACTN Length = 325 Score = 312 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 116/356 (32%), Positives = 179/356 (50%), Gaps = 48/356 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++V ++ GG S E E+SL S KN A+ ++ + Sbjct: 15 MKVAVLAGGISDEREISLASGKNAAAALTEAGY--------------------------- 47 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 ++ V L +NG DV F +HG GEDG Q +L Sbjct: 48 ----------GTVEMVDPGERGFLSRLENGN----YDVAFIALHGFGGEDGMTQHILEFL 93 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS+ LAS MDKD++K L R AGL +AP +T TRA+ +I E+ +G F Sbjct: 94 GIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRADMPSID--EIVEIVGPQSF 151 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQAS 242 VKP GSS G+S V + A++LAFE KV+VE + G E A LG+ + +A Sbjct: 152 VKPVVNGSSYGISLVKDPSELTAAIELAFEHGDKVMVEHRVFGVECSVAALGDGETLRAL 211 Query: 243 TCGEIVLT--SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI++ S+FY + KY D + +PA + ++ +++ IA +A++ LG G++R Sbjct: 212 PVVEIMMPQQSEFYDLEVKYADPNDI-HRIPAQLPEDVYAQVQDIACRAHEALGLFGISR 270 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 DV +T + + I E N +PG T+ S+ P + +G+ ++DL L+ELALER A Sbjct: 271 TDVIVTEDGPI-ILETNNIPGMTSESLVPDEARHAGIAFSDLCAELVELALERAAR 325 >UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C25 Length = 302 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 164/346 (47%), Gaps = 53/346 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG+S E E+SLQS + ++ ++ +S+ + L Sbjct: 8 KVAVLLGGESNEREISLQSGQAVLTSLLQSKVNAFGLD---------------------- 45 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + L +F +HG GEDG +Q L Sbjct: 46 -----------------------PKFEPLSKLAECSRVFICLHGKDGEDGKIQSYLDDIK 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS AS MDK ++K + + +N F+ L +++ EV LG F+ Sbjct: 83 IPYTGSGFHASKLGMDKLLSKNIWKKLKINTPNFVRLEEG----MTYDEVCKNLGSSFFI 138 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 K AN GSS+G+SKVT +QY A + A++ D+ VI E I G E +L + + Sbjct: 139 KAANSGSSIGISKVTKPQQYQAAFESAYKVDNTVIAEMMIFGEEFTLPIL---DSSPLSI 195 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EI +DFY Y+ KY D + + PA + + DKI + ++A+ LGC+G RVD Sbjct: 196 VEIRPKTDFYDYEAKY-HRDDTEFICPAKLDKVLVDKINQLGMKAFNALGCSGWGRVDFM 254 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + +NEV I E+NT+PG T+ S+ P + SGL + L+ ++++ A Sbjct: 255 INNQNEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLDTA 300 >UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFZ2_9BACT Length = 298 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 96/355 (27%), Positives = 164/355 (46%), Gaps = 63/355 (17%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ +V +++GG SAE EVSL+S + D++ + + VL+ +D+ +S+A Sbjct: 1 MKDKKVAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISEA------ 54 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F +HGT GEDG +QGML Sbjct: 55 -------------------------------------GADVCFIALHGTYGEDGRVQGML 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS A+ DK ++K G+ +I L + G+ Sbjct: 78 DIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELNAPKK------------GM 125 Query: 181 P---LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 P +KPA QGSSVG+ V +EE+Y ++ AF++D KVIVE+ IKG E+ ++L Sbjct: 126 PFECCVIKPARQGSSVGIHIVQNEEEYFSKLEDAFKYDSKVIVEECIKGVELTVSIL--- 182 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + + I Y Y++KY + + V ++ + + A++A+ LGC+G Sbjct: 183 DGETLPVICIRPKKGVYDYESKYT-KGMTEYVFDTGLSASETECVENAAMKAFDVLGCSG 241 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R D+ + E+NTLPG T S+ PK +G+ + +++ +++ A + Sbjct: 242 YGRADIMYDGR-TPYVLEVNTLPGMTETSLLPKAANKAGMSFDNMVEKMLLGAFK 295 >UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogaceae RepID=DDL_FERNB Length = 316 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 94/359 (26%), Positives = 160/359 (44%), Gaps = 53/359 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + +G++ GG S E E+S++S K I A+ V + +D + +S+ Sbjct: 1 MYLGVLLGGISREREISIRSGKRIAQALRNMGHVVDEIDVDDNFIYKLSE---------- 50 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L D +F I+HGT GEDG +Q +L Sbjct: 51 --------------------------------LKKYDALFNILHGTFGEDGKMQAILDSI 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRD--------AGLNIAPFITLTRANRHNISFAEVE 175 +P+ GS V S DK + + + + + I F+ ++ +E Sbjct: 79 GIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFLLISSEEFEESKIYMIE 138 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 K+GLP VKP +GSS+G S+E+ A+ F+ ++IV++ IKG+EI +V+ Sbjct: 139 EKIGLPCVVKPRKEGSSIGTHICFSKEELLDALKNEFKNYDEMIVQEYIKGKEITVSVID 198 Query: 236 -NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 N P E+ FY Y+ KY D + ++PA + E +KI ++ Y++LG Sbjct: 199 INGTPTVLPILELRPKKLFYDYEAKYTD-GMTEFIIPAELDGETTEKINHAVLKIYKSLG 257 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C +R+D + + E+NTLPG T +S P A G+ + +L+ +I+ A + Sbjct: 258 CKHFSRIDGIV-KDGVFYFLEVNTLPGMTELSDLPMSANAFGISFDELVDLIIKEACRK 315 >UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9PTP4_9BACT Length = 392 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 104/352 (29%), Positives = 171/352 (48%), Gaps = 32/352 (9%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWH-VSDASNYLLNA 61 K + IV GG S+EHEVSL+SA+ + DK +++V ++ I++ + + +++ Sbjct: 64 KRNIAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERMNWKVDLGNGERAIIDK 123 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 +D + + D + +HGT GE+G +QG Sbjct: 124 NDFSFVHEGEQ------------------------VFFDYAYITIHGTPGENGIMQGYFE 159 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + ++P+ S VL A DK V LR G+N+A I + R I VE++LG+P Sbjct: 160 LIDMPYSTSGVLVEALTFDKYVLNNYLRGFGVNVANSILVRRGEEFGIDERAVEAQLGMP 219 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQ 240 FVKPA GSS GVSKV + +Q A A+ A D ++E + G EI + Sbjct: 220 CFVKPAADGSSFGVSKVKNIDQLAPALRKALMEDDSAVIESFLDGTEISVGCYRVKGETK 279 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 E+V ++F+ YD KY + + PA IA E ++ + Y+ L C G+ R Sbjct: 280 VLPATEVVSHNEFFDYDAKY--NGQVEEITPARIADETARRVAEETARIYEILNCNGIIR 337 Query: 301 VDVFLTPE----NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 +D LT E +++ + E+NT PG T S P+ +A+G+ D+++ ++E Sbjct: 338 IDYILTKEPDGTDKINLIEVNTTPGMTPTSFIPQQVRAAGMEMKDVLSEIVE 389 >UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH51_9BACT Length = 1029 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 166/354 (46%), Gaps = 56/354 (15%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 + L++ ++ GG S+E +SLQSA+ + A+ +V + I Sbjct: 728 KALKIAVLKGGPSSERPISLQSAEAVAKALRDGGHEVTEIDIT----------------- 770 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +D++FP++HG GEDG +Q ++ Sbjct: 771 ---------------------------DFSLPAISKDIDLVFPVLHGEFGEDGQVQKLIE 803 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 P+VG D+ +S C+DKD LR++GL + + L + E+ + LP Sbjct: 804 GQGFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRSKDE------EISQNITLP 857 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 VKP QGSS+ +S V E A+DLAFE D V+VE KG E ++ + +A Sbjct: 858 CVVKPNRQGSSISLSLVEKEGDLRKAIDLAFENDDTVLVESFFKGIECTVGLI---DGKA 914 Query: 242 STCGEIVLTSDFYAYDTKYI-DEDGAKVVV-PAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + EI+ F+ YD KY + + P I +++++++ ++++ L + Sbjct: 915 LSVVEIIPPEGFFDYDAKYTYSKGKTQYNCPPKEIPEDVSERLKKCGEESFKVLKGRHLM 974 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVD+ P+ ++ +I E NT+PGFT+ S+ PK + G+ +T+L L + A+E Sbjct: 975 RVDMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFTELCCGLAKKAIE 1028 >UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia muciniphila RepID=D2N2G7_9BACT Length = 316 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 157/354 (44%), Gaps = 59/354 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRF-DVVLLGIDKQGQWHVSDASNYLLNAD 62 L++ ++ GG AE EVSL S ++ DA+ ++ F DV + + + + + + Sbjct: 13 LKIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDV-HGPDFRLPEGTE------ 65 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + I+HGT GEDG+LQ +L Sbjct: 66 --------------------------------------LAYNIIHGTFGEDGTLQAILEE 87 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ G+ +SA C +K +K++ +AG+ A + S V L LP Sbjct: 88 RGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTP------HAEILDCSNGIVMPSLPLPF 141 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP +GSSVGV V +E A++ A V+VE+ I+G+E+ +L + +A Sbjct: 142 VIKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEEFIQGKELTVGIL---DGKAL 198 Query: 243 TCGEIVLTSDFYAYDTKYID---EDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 I S FY KY G + PA + E ++ A++AY+ G Sbjct: 199 PVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAYKAAGVEVYG 258 Query: 300 RVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVDV L + + EINT+PG T S+ PK ASG Y DL ++ EL+L Sbjct: 259 RVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAELSLA 312 >UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacteria RepID=DDL_XYLFT Length = 304 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 162/350 (46%), Gaps = 52/350 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG SAE EVSL S +N+++ + D + Sbjct: 4 RVAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVD---------------------- 41 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHG--TLGEDGSLQGMLRV 122 + D +F ++HG GEDG +QG+++ Sbjct: 42 ---------------------GVPALAQALVERRFDRVFNVLHGHNGGGEDGVVQGLMQA 80 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ GSDVL SA MDK TK++ GL + +L+ + + LG P+ Sbjct: 81 FGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVC-ATAVEVRKAVEMLGFPV 139 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KPA +GSSVGVS+V + E AV LA ++ ++++EQ I+G E+ ++L + A Sbjct: 140 IIKPAKEGSSVGVSRVFALEHLEEAVALAARYEGELLMEQLIEGDELTVSIL---DEMAL 196 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 IV +Y Y+ KY+ ED + V P + +I +A+ A+ ++GC G RVD Sbjct: 197 PSIRIVPQGQWYDYNAKYLAED-TQYVCP-GLDDVAEAEIAQLALAAFHSVGCRGWGRVD 254 Query: 303 VFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 V + E+NT PG T S+ PK G+G+ DL+ R++E L Sbjct: 255 VMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRILEQTL 304 >UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrobiaceae RepID=B2UPW3_AKKM8 Length = 311 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 157/354 (44%), Gaps = 59/354 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRF-DVVLLGIDKQGQWHVSDASNYLLNAD 62 L++ ++ GG AE EVSL S ++ DA+ ++ F DV + + + + + + Sbjct: 8 LKIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDV-HGPDFRLPEGTE------ 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + I+HGT GEDG+LQ +L Sbjct: 61 --------------------------------------LAYNIIHGTFGEDGTLQAILEE 82 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ G+ +SA C +K +K++ +AG+ A + S V L LP Sbjct: 83 RGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTP------HAEILDCSNGIVMPSLPLPF 136 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP +GSSVGV V +E A++ A V+VE+ I+G+E+ +L + +A Sbjct: 137 VIKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEEFIQGKELTVGIL---DGKAL 193 Query: 243 TCGEIVLTSDFYAYDTKYID---EDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 I S FY KY G + PA + E ++ A++AY+ G Sbjct: 194 PVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAYKAAGVEVYG 253 Query: 300 RVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVDV L + + EINT+PG T S+ PK ASG Y DL ++ EL+L Sbjct: 254 RVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAELSLA 307 >UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9U3_BLASP Length = 331 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 99/360 (27%), Positives = 176/360 (48%), Gaps = 30/360 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + IV GG + E +SL+S + + + K F+V + + + +W + D +N Sbjct: 1 MKK--IAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIE-KWILKDKNN---- 53 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + P + + N Q L D +F +HGT GEDG LQ Sbjct: 54 ----------------KEYPVNKQDFTVRITNDQIL-KFDCVFNAIHGTPGEDGVLQAYF 96 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ G ++ +K L++ G+ AP L + + ++ K+GL Sbjct: 97 HLLKIPYTGCHFHHASVTFNKKYCLTFLKEFGIKTAPSFFLNK--NQSFCEKKILKKVGL 154 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNP 239 P FVKP GSS+G+SKV E + A A++ AF D ++IVE +KG E+ V+ N + Sbjct: 155 PCFVKPNRSGSSLGISKVYQERELAKAIEHAFRKDQEIIVESFLKGTEVSVGVISWNQDI 214 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + EI+ +DF+ +++KY ++ + PA + P + KI+ +A Y+ L +G++ Sbjct: 215 KVLPITEIISRNDFFDFESKY--SGKSQEITPARLLPSLEKKIKKLAKNVYEILNLSGIS 272 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 R + L + EINT+PG + S+ PK + +G+ ++L + I ++E N+ Sbjct: 273 RSEYILV-NGDPFFLEINTIPGLSEESILPKQLKIAGISLSELFKKNIYDSIEIFKKKNS 331 >UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae RepID=DDL_AQUAE Length = 291 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 164/345 (47%), Gaps = 56/345 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG+S+E E+SL++ K + A+ + +V L +DK+ + + Sbjct: 1 MRVVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLEIKP------- 53 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 D +F +HG GEDG++QG+L + Sbjct: 54 ------------------------------------DKVFIALHGRYGEDGTVQGLLEIL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT-LTRANRHNISFAEVESKLGLPL 182 ++P+ GSD +ASA +DKD TKR+++ G+N + T ++ + N + + P Sbjct: 78 DIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVLNTEWNK------FPA 131 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 VKP +GSSVG+ V S E+ + +V+VE+ ++GR++ +L + A Sbjct: 132 VVKPVREGSSVGLKIVESLEELKEYALDLLKKTERVMVEEFVEGRDMTVGILKGE---AL 188 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ Y Y+ KY ++ +++ K++ I+++ + L AR+D Sbjct: 189 PVVEIIPKKGVYDYECKYTKGMSEYRILK---DEKLSKKLQEISLKISKFLSLKDFARID 245 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 +T E ++ E+NT+PG T +S+ P + G+ + LI+ +I Sbjct: 246 FRVTKEGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290 >UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4ECT1_9ACTN Length = 321 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 111/356 (31%), Positives = 166/356 (46%), Gaps = 48/356 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +E + V ++ GG SAE E+SL S KN+V A+ ++ + V L Sbjct: 6 LENMHVAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVEL------------------- 46 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + D DV F +HG GEDG++QG + Sbjct: 47 ----------------------IDTAADDFMVTMATGGFDVAFIAMHGAGGEDGAMQGAM 84 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA DK+V+K L AG+ IAP + L + + + G Sbjct: 85 ETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLALEVGD--EVDIDHIVEVCGE 142 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 FVKPA GSS G+S V + A+ AF + KV+VE+ I+G EI V G D+ + Sbjct: 143 RCFVKPAVNGSSYGISLVHEPSELPAAIAKAFAYGDKVLVEKCIEGTEITVGVYGEDDVR 202 Query: 241 ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A EI D FY D KY+D +PA I+PE + + +A A++ LGC G+ Sbjct: 203 ALPIVEIRKPEDCEFYDLDVKYVDPTDI-HRIPAQISPENYARAQELACAAHKALGCLGI 261 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQAS-GLGYTDLITRLIELALER 353 +R D ++ + VI E NT+PG T+ S+YP + + + + + LI + L R Sbjct: 262 SRSDFIVSEDG-PVILETNTIPGMTDTSLYPDEIRHTDDMTFPQVCDSLIRMGLRR 316 >UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W8_9ZZZZ Length = 301 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 167/353 (47%), Gaps = 54/353 (15%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K +V ++ GG SAE EVSL + K + A+ K+ ++VV D Q + + + Sbjct: 1 MAK-KVLVLMGGFSAEREVSLTTGKCVCAALKKAGYEVVSH--DLQNGFELVETL----- 52 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV+F +HG GEDG +QG L Sbjct: 53 ----------------------------------KKEKPDVVFNALHGNWGEDGEIQGFL 78 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 V +P+ S + AS MDK +TK L + G+ + +T F + L + Sbjct: 79 DVLQVPYTHSGLKASVLGMDKSLTKELASENGIKVPQGEKMT-----FRKFKAEGTFLKM 133 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P VKP + GSSVGV + +E A + +E D ++++E+ I G+E+ C VLG+ Q Sbjct: 134 PYVVKPVSDGSSVGVYIIRKKED---AEAVRYEDDREILIEEFIDGKELTCMVLGS---Q 187 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A E+ + +FY Y KY + ++PA I E ++ + A + LGC ++R Sbjct: 188 AHVVTELRASDEFYDYHAKYT-AGATQHILPAEIPEEAANRCKLYAEHMHNILGCRSVSR 246 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 D PE+ VV+ EINT PG T++S+ P+ + G+GY L + L+E A R Sbjct: 247 CDFRYNPEDGVVLLEINTAPGMTDLSLVPEQAKYIGIGYERLCSYLVENASCR 299 >UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibrionales RepID=DDL_DESDG Length = 308 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 157/356 (44%), Gaps = 52/356 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+ ++ GG S E +VSL A+ I A+++ V L Sbjct: 1 MRILLIAGGWSEERDVSLSGARGIHAALERLGHQVTLFD--------------------- 39 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P + L++A D F +HG GEDG +Q +L A Sbjct: 40 ----------------PCRTLAGLLEAAQAH-----DFAFLNLHGQPGEDGLVQALLETA 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS S ++K K + GL ++ L A+ E P F Sbjct: 79 GVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHPG-----ADWEPPFAFPAF 133 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +K N GSS+ + +V+ + A A+D F + I+E ++G E+ C VLG++ A Sbjct: 134 IKSNNGGSSLALHRVSCPGELARALDELFTRGGEAIIEPAVEGVEVTCGVLGDE---ALP 190 Query: 244 CGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 I + F+ Y +KY A+ + PA + E+ K+R A++A++ LG G +R D Sbjct: 191 PILIRPLGAGFFDYASKYTP-GQAEELCPAPLPGEVTAKVREYALRAHRALGLRGYSRSD 249 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 LTP + + E+NTLPG T S+ P+ A G+ + LI RLIEL L H Sbjct: 250 FILTPAGALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLIGRLIELGLAAHGKQQ 305 >UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SQZ6_PSYIN Length = 380 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 114/369 (30%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +++V +VFGGKS EH+VS+ SA +I+ ID ++ V + K G + L Sbjct: 4 SRMKVAVVFGGKSTEHDVSIISAGHILANIDMEKYFVEPFYVKKDGTFADHQELTLCLEN 63 Query: 62 DDPAHIALRPSATSLAQVPGKH---EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 H A ++ K + D G D++FP++HG GEDG++QG Sbjct: 64 LLNEHRDKIFPAMKEGEIELKKWIAKGTSSDFLGGIAGKKFDIVFPVLHGLNGEDGTIQG 123 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVE 175 ML +P+VG V ASA C+DK+ TK + + + + + + + N + +++ Sbjct: 124 MLEFMGVPYVGCGVSASAFCIDKEATKVICQVNDIPVMDYTAVKKYEWENSTENIINDIQ 183 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVL 234 K+ P +VKPA GSS+G+S+ + + ++ AF++D KV+VEQG++ RE+ V+ Sbjct: 184 KKMNYPFYVKPARLGSSIGISRAENTVELKTSLKDAFKYDCKVVVEQGVESPRELTVGVM 243 Query: 235 G-NDNPQASTCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 G +D S GE S+ ++ +D+KY + G K +VPA + I + I + ++ Sbjct: 244 GIDDQVSLSAIGEFSRGSNLYFNFDSKY-GKTGHKGLVPAPLEENIQEIIEKYSHLIFKK 302 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA-L 351 +G AR+D FL + +V +NEINT+PGF + ++WQ G+ I + IE L Sbjct: 303 FELSGFARIDYFLCGD-KVYLNEINTMPGFETGDTFMRIWQNKGVDMQKFIDKAIEYGVL 361 Query: 352 ERHAADNAL 360 H+ L Sbjct: 362 SFHSKSTRL 370 >UniRef50_D2MND8 D-ala D-ala ligase N-terminal domain protein n=2 Tax=Erysipelotrichaceae RepID=D2MND8_9FIRM Length = 394 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 118/380 (31%), Positives = 193/380 (50%), Gaps = 23/380 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KLRVG+ FGG+S EHEVS+ SA+ + A+DK +++V+ L + K + + + + + Sbjct: 2 KLRVGVFFGGESVEHEVSIISAQQAIHALDKDKYEVIPLYVAKDRKIY-YNPEKFFSVEN 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQL----IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 AL + + V +E + I + L T+D+ P++HGT GEDG++QG Sbjct: 61 FTNLPALLKESIQVTLVNLGNECAIRPVHIGLFQKKTLGTIDLAIPVMHGTNGEDGTIQG 120 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFAEVES 176 + + +PF G D+ + DK K +L D L I P+ + + + E + Sbjct: 121 LFEMLKIPFAGCDIYGAVIGQDKVFQKHILHDNHLPITPWFWVYGQDIETYQTQILEKVN 180 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLG 235 LG P+ +KPA GSS+G+S E+Y A +D K+I E+ IK REI C+V+G Sbjct: 181 SLGYPVILKPARTGSSIGISIAHDNEEYLDCFKDAMRYDEKIITEKVIKPMREINCSVIG 240 Query: 236 NDNPQASTCGEIVLT--SDFYAYDTKYIDED--------GAKVVVPAAIAPEINDKIRAI 285 + ++ E V + +D KY VPA ++ E I+ + Sbjct: 241 DHTGSRASVLEEVTQQEKELLDFDKKYGSGGSKGKSGMAATSRQVPAPLSHEETKYIQQL 300 Query: 286 AVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 A ++ LG AG+ R+D + E ++ INEINT+PG S+ LW+ G+ ++ L+ Sbjct: 301 AKDTFRVLGSAGVCRIDFIMDAETKKIYINEINTIPG----SLAFYLWKEEGVDFSKLMN 356 Query: 345 RLIELALERHAADNALKTTM 364 +LI LAL+R N + T+ Sbjct: 357 QLITLALDRERRRNQITTSF 376 >UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcus sp. MC-1 RepID=DDL_MAGSM Length = 310 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 156/350 (44%), Gaps = 47/350 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++ ++G+++GG S E EVSL+S + + A+ + VV + +D+ Sbjct: 4 KQKKIGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDRH--------------- 48 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++V +HG +GEDG++QG+L Sbjct: 49 ----------------------------ITKVLEREGIEVAVLALHGPMGEDGTIQGLLE 80 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKLGL 180 +P+ G +V ASA CMDK ++KRL GL +I L + Sbjct: 81 FMGIPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIELAGDHEEADELVDHFLGDFHG 140 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 FVKP + GSSVG+S+ +++ V A H+ +VE+ I+GRE+ ++L + + Sbjct: 141 AAFVKPLDSGSSVGISRAVGKDELIRGVAKALSVSHRCMVERAIEGRELTLSIL---DGE 197 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EIV FY YD KY +V + + + + I + AY GC G+ R Sbjct: 198 AFPLIEIVPIDGFYDYDHKYTAGRTNYLVPAPNLDDKSLEAVVKIGLAAYHITGCRGLVR 257 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 D L E + E+NT+PG T +S+ PK A G+ L R+++ A Sbjct: 258 ADFILDGEGTPWLLELNTIPGMTELSLAPKAAHAVGIEMPQLAERILQGA 307 >UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma whipplei RepID=DDL_TROWT Length = 347 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 110/353 (31%), Positives = 182/353 (51%), Gaps = 21/353 (5%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R+ ++FGG+S EH VS SA+ +++ I + V+ +GI K G + ++ D Sbjct: 3 RLLLLFGGRSQEHSVSYASARALLEHICDE-WTVIPVGITKHGDFVYCST----VSEQDY 57 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + + G + +++ A+ D++FP++HG GEDG++QGML + + Sbjct: 58 GEVIDNGNRVVWPSRAGCKKIEVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDLLD 117 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKLGLP 181 +P+VGS V ASAA MDK TK L AG+ + P+ + H + ++ + P Sbjct: 118 IPYVGSGVFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDSFLKQISDRFTFP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 LFVKP + GSS G + V EQ +A++ A + IVE + E+ C+++ N+ Sbjct: 178 LFVKPVDAGSSFGCTFVDFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSLIENNG--V 235 Query: 242 STCGEIVL----TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 C E+V S FY Y KY++ + V+PA D IA + + LGC Sbjct: 236 LQCSELVFVKHSGSKFYDYSAKYLNP--VEFVIPAQFDN--TDGYAEIASKVFFELGCRH 291 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 AR+D F+T +V+NEINT PG T S++P +++ + Y+ +I ++ A Sbjct: 292 YARIDFFVTESG-LVLNEINTSPGLTQKSIFPSSFKS--MQYSQVIETILASA 341 >UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_RUTMC Length = 293 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 91/344 (26%), Positives = 151/344 (43%), Gaps = 53/344 (15%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 + ++ GG SAE VSL+S + + A+ + WH + S Sbjct: 2 IAVLMGGNSAERAVSLKSGEAVYQALINQNINCFEFD------WHGYNLSELW------- 48 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 D F ++HG GEDG +Q L + Sbjct: 49 ------------------------------QQEFDQAFIVLHGRGGEDGYIQKQLENRCI 78 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 + GSD AS +DK TK + + L +AP I + I LP VK Sbjct: 79 RYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSIVAS------IHKPIEPIDFPLPWMVK 132 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 P +GSS+G+SKV S+ Q A+ LA++++ ++EQ I+G E A+LG+ +A Sbjct: 133 PTLEGSSIGISKVDSQIQLNNALMLAWQYNSHALIEQWIEGDEYTVAILGD---KALPVV 189 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 +I+ FY Y++KY + + + P ++ ++ IA++A+ + G RVD + Sbjct: 190 KIITDQGFYDYESKY-HSNKIQYLCPCGLSSSQEQVLQVIALKAFFAINAKGWGRVDFII 248 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 N+ + EINT+PG T+ S+ P +A G+ + L+ +I Sbjct: 249 NQHNKPYLLEINTVPGMTSHSLVPMAAKAMGMSFNKLVVAIINE 292 >UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteriales RepID=A4CP91_9FLAO Length = 329 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 89/355 (25%), Positives = 159/355 (44%), Gaps = 29/355 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++ ++ GG S+E+E+SL+S + + +D+ ++D + I + + D+ Sbjct: 3 STKKIAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGR----- 57 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + P ++ ++G D +F +HGT GE+G +Q Sbjct: 58 ----------------EYPVSRHDFSVELEDGTL--RFDCVFNAIHGTPGENGLMQAYFE 99 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P +A +K +L+ AG+ A L R N + +GLP Sbjct: 100 LIGMPQTSCGFYQAAVTFNKRDLLGILKSAGVPAARSYHLDRGQELNQQA--ILDAVGLP 157 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP-Q 240 FVK GSS GVS V AV+ A + D ++++E ++G E+ V+ + Sbjct: 158 CFVKANRAGSSFGVSLVREASGLQAAVENALKEDDEILIEAALQGTEVSVGVIRYQGATR 217 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EIV +DF+ Y KY E ++ + PA I + +K+R +A + Y L G +R Sbjct: 218 VLPITEIVSENDFFDYQAKY--EGKSREITPARIPEDTAEKVRELAARIYDRLRMTGYSR 275 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + L + E + E+NT PG T S+ P+ +G+ T+L I AL+++ Sbjct: 276 SEFILV-DGEPHLLEVNTTPGLTEASILPQQAACAGISLTELFGSAIADALDKNG 329 >UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD72_PLALI Length = 338 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 141/348 (40%), Gaps = 48/348 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 + ++ GG S E +SL+S + + A+ + ++ + Sbjct: 17 NIALLAGGDSDERSISLRSGQAVCQALQERGHFILPID---------------------- 54 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 I + G D +F +HG GEDG +Q +L + Sbjct: 55 ---------------------PAIVSLKGMDWNGFDAVFIALHGRFGEDGGVQTLLEESG 93 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS AS DK + K+ + + L+ + S +LG P+ + Sbjct: 94 IPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWCELSPHESFD-SLLMKAKELGWPVVI 152 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA+QGSS+GVS V EQ A + A +D +I+E I G E + + + Sbjct: 153 KPASQGSSLGVSIVRQPEQLQSAYERARHYDEALIMEAAIVGSEWTVGL---HDDEILPP 209 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I +F+ + KY D D + + + K+ A LG G++RVD+ Sbjct: 210 ICIETDREFFDWVAKYED-DHTRYIFDKPLPATCRQKLETACRGAVHALGVTGISRVDLM 268 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L E + EINT+PG T+ S+ PK Q +G +L I A++ Sbjct: 269 LDSEGNPWVLEINTIPGLTDHSLVPKAAQQAGWSLGELCEESIHRAIQ 316 >UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9D0_9PORP Length = 329 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 112/354 (31%), Positives = 168/354 (47%), Gaps = 29/354 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + I+ GG S E EVS +SA+ I+ ID+S F L+ I W V+DA+ Sbjct: 1 MDKPNIAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITAD-AWSVTDATGREGT 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D + + A+ G T V + +HGT GE+G LQG L Sbjct: 60 ID-----------------------RALVARFGAEEVTFAVAYITIHGTPGENGLLQGYL 96 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH--NISFAEVESKL 178 + +P+ VL A +K+ L GL IA L + ++ES L Sbjct: 97 DMLGIPYTTGGVLCEALTFNKEACNAYLAHHGLRIARSQRLHNQTKELSPEEQQQIESTL 156 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA-VLGND 237 LPLFVKP GSS+ +++ +Q A AV A+ V+VE+ I G E+ C V+ D Sbjct: 157 RLPLFVKPNTGGSSIATTRIEQWDQLATAVVDAYTAAPDVLVEECIVGTEVTCGCVILPD 216 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 A E+V F+ YD KY + + PA I+PE+ +++ ++ L C G Sbjct: 217 EAFALPVTEVVAHDTFFDYDAKYY--GKSDEITPARISPELTQRVQETSLTIAHLLDCYG 274 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 R+D + + + E+NT PG T S P+ +A+GL +DLITR+I+ L Sbjct: 275 FVRIDFIIEADGIPTLLEVNTTPGMTEASFIPQQVRAAGLQLSDLITRIIKSKL 328 >UniRef50_Q821S4 D-alanine--D-alanine ligase n=15 Tax=Chlamydiaceae RepID=MUDD_CHLCV Length = 811 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 105/371 (28%), Positives = 175/371 (47%), Gaps = 27/371 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL VG+V GG+S EH+VSL SA+N+V + +DV I++QG W Sbjct: 450 KKLSVGVVCGGQSCEHDVSLLSARNVVQYLSPQHYDVQYFVINRQGLWS----------- 498 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + + ++ ++ + L +D + PI+HG GEDG+LQG L Sbjct: 499 --------QVANLDAGSDYNSKNYHVLSSKIAEALANLDFVLPILHGPFGEDGTLQGFLE 550 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKL 178 +AN P+ G +L SA MDK +TKRL G+ + P+ LT + + Sbjct: 551 IANKPYGGPSLLFSAISMDKIMTKRLAASVGVPVVPYQPLTLPTWKRTPELCMRRILETF 610 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN- 236 P+FVK A+ GSS+GV +V +E + + AF +D V +E+ G REIE + LG+ Sbjct: 611 TFPMFVKTAHLGSSIGVFEVHNETELKAKISEAFLYDTDVFIEESRLGSREIEVSCLGDA 670 Query: 237 -DNPQASTCGEIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 S E + F Y+ KY + A + ++ E +++ + + Y+ + Sbjct: 671 CSCYYISEPHERRGSKGFIGYEEKYGFNGKSSATIQYDLNLSEESKTRVKELTERVYRVI 730 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D FL E ++E+N +PG T S + + G + ++ +LI L + Sbjct: 731 QGKGSCRIDFFLDREGNFWLSEMNPIPGMTKSSPFLHDFARLGWTFEQIVHQLIIAGLHK 790 Query: 354 HAADNALKTTM 364 + +T Sbjct: 791 FDQKKKVSSTF 801 >UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B4D1Z2_9BACT Length = 315 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 102/359 (28%), Positives = 157/359 (43%), Gaps = 62/359 (17%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 ++ ++ ++ GG +E +VSL S + +A+ DV + ++ Sbjct: 12 LKNKKIAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVN---------------- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 S VP DV F ++HGT GEDG +Q +L Sbjct: 56 -------------GSDFIVPAGT----------------DVAFNVIHGTFGEDGQIQRIL 86 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + G V S +DK TK+ + + A F L L L Sbjct: 87 ESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFEILRDG---------ANPTLPL 137 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P VK +GSSVGV V E + A + A+ + +++VE I GRE+ VLG+ Q Sbjct: 138 PYVVKAPKEGSSVGVFIVREEAKVADTMREAWSYGKELLVEDFINGRELTVGVLGD---Q 194 Query: 241 ASTCGEIVLTSDFYAYDTKY-----IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A EI DFY +D KY A+ PA I+ E+ +++ +A+ A + + Sbjct: 195 ALPIIEIKPAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALAAARAIHL 254 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 RVDV LT E + EINT+PG T +S+ P+ A+G+ Y +L R+IEL+L R Sbjct: 255 ETYCRVDVLLTGAGEPYVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVIELSLARR 313 >UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aphidicola RepID=B6CM19_9ENTR Length = 310 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 168/349 (48%), Gaps = 50/349 (14%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V ++ GG S E ++S+ S ++ ++ +S Sbjct: 2 KKKVAVLLGGNSTERKISISSGHAVLKSLMRSGIKAYPFD------------------TR 43 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + L+ D + +HG GEDGS+QG+L Sbjct: 44 DFPIMQLKKQ-------------------------KFDTAYIALHGKGGEDGSIQGVLEY 78 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES---KLG 179 +P+ GS ++AS+ +DK TK L + AGL + P + + + + + ++ KL Sbjct: 79 LKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDVYIQKKDILKNLSSLLKKRFFKLD 138 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 PL VKP NQGSS+G++ V + Q A+++AF + + ++VEQ IKG E ++L + Sbjct: 139 FPLLVKPNNQGSSIGITLVYLKNQLKNAIEVAFNYSNTILVEQFIKGTEYTVSIL---DE 195 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + +I+ ++FY + +KY + + P+ + + K++ IA +A+ TLGC G Sbjct: 196 KILPSIQIITKNNFYDFASKYQ-LSSTQYLCPSGLNLKQEKKLKKIAKKAWDTLGCNGCG 254 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 R+DV L N+ + EINT+PG TN S+ P A G+ + +L+ ++ Sbjct: 255 RIDVILDSNNKFWLLEINTIPGMTNRSLLPISANAIGMSFDELVLNILN 303 >UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TN08_9BACT Length = 308 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 160/350 (45%), Gaps = 47/350 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+ ++ GG S E VSL S K + + + V L+ + +A L D Sbjct: 1 MRISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLSS------PEALFSFLAGDR 54 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P + F +HG GEDG LQ +L +A Sbjct: 55 PE-----------------------------------LCFVALHGGWGEDGRLQAVLDMA 79 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS A MDK ++K AGL++ + + S + SK G L Sbjct: 80 GVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDVPWGVAVHPGEGS--SPMKALSKWGT-LV 136 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-PQAS 242 VKP GS+V V+ E++ A+ A+E +++ +VE + GRE+ V+ + P+A Sbjct: 137 VKPCCGGSTVATYIVSEEDELRKALSSAWELENRALVEAYVAGRELTVTVVEDRGIPRAF 196 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ +FY Y KY G++ V PA + P + + + A A++ GC+ +RVD Sbjct: 197 PIVEILPDGEFYDYRAKY--GGGSRYVSPADLEPSVVEVVSRSAEIAHRVSGCSIYSRVD 254 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + L +N + EINT+PG T+ S+ PK A G + DL+ ++E ++ Sbjct: 255 IRLDGKNRPFVLEINTVPGMTSNSLVPKAAMAGGFSFPDLLDHIVEESMA 304 >UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RepID=B5FI74_SALDC Length = 285 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 94/349 (26%), Positives = 158/349 (45%), Gaps = 71/349 (20%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVD---------------------- 41 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P +AQ+ + +F +HG Sbjct: 42 ------PQEVDVAQLKAMGFQK---------------VFIALHGR--------------- 65 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 V+ASA MDK +K L + AGL +AP++ LTRA E +++ LGLP Sbjct: 66 ------GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 119 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 120 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 176 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 177 LPSIRIQPAGTFYDYEAKYLS-DETQYFCPAGLDASQEAALQSLVLQAWKALGCTGWGRI 235 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 236 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 284 >UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp enzyme n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7C3_9GAMM Length = 309 Score = 304 bits (778), Expect = 5e-81, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 163/353 (46%), Gaps = 54/353 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R ++ GG +AE E+SLQS +N+ ++ + V + + Sbjct: 10 RFAVLMGGAAAEREISLQSGENVASVLEAAGCPVTRIDPAVE------------------ 51 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 Q L +D +F ++HG GEDG LQG+ V N Sbjct: 52 --------------------------QWADQLSDIDFVFNLLHGPGGEDGVLQGLFDVMN 85 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP+ GS VL SA MDK TK+L GL F LT + ++++ + G LFV Sbjct: 86 LPYSGSGVLGSALTMDKARTKQLWSGMGLPTPDFTLLT----ADTDWSDLIERHGT-LFV 140 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSS+G+SK ++ EQ A A + +I E + G E ++LG+ +A Sbjct: 141 KPALEGSSIGMSKASTPEQLEAAWKRARAYKGGIIAECFVAGEEYTVSILGD---RALPA 197 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I S+FY +D KY+ D P+ + ++ A+A++A+ + A RVDV Sbjct: 198 IRIEPASEFYDFDAKYVS-DNTGFFCPSGLTASDEAELSALALRAFYAVDAAVWGRVDVM 256 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE-RHAA 356 + E+NT+PG T+ S+ P +A + D ++ + L++E R+A+ Sbjct: 257 RDISGAWQLLEVNTIPGMTSHSLVPMAARADSMTLIDFLSEIYRLSMEARYAS 309 >UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B634_THEAS Length = 316 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 167/351 (47%), Gaps = 46/351 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++V + +GG S E EVSL+S + + +A+ + V L+AD Sbjct: 1 MKVLVAYGGDSPEREVSLRSGEAVKEALSSLGWTV------------------EGLDADS 42 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P + R D++F +HG GEDG+LQ +L Sbjct: 43 PLRVVER-----------------------ALSGAFDLVFVALHGGWGEDGTLQCLLDTH 79 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ G A ACMDK++T+ +L G+ + I + E+ + G L Sbjct: 80 RIPYTGPRWGACMACMDKEITRGVLLARGVRVPEGIPFD-GSMDQGVLLELLRRWGR-LV 137 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQAS 242 VKP GS+VG+ V + A+D AF +D +++VE+ I+GRE+ AV + P+A Sbjct: 138 VKPCRCGSTVGIGIVDHPSRLDRALDEAFRYDRRLVVERFIEGRELTVAVFDTPEGPKAL 197 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI S FY Y +KY + + + PA ++ + + + AV+AY+ +GC+ +RVD Sbjct: 198 PTVEIRPRSGFYDYSSKYT-KGMTEYLCPAPLSEQEAEAVARAAVEAYRAMGCSVYSRVD 256 Query: 303 VFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 V L E + E+NT PG T+ S+ PK A G + +++ R+ E +L Sbjct: 257 VRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDFPEMLRRICEASLA 307 >UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobacteria RepID=DDL_CAUSK Length = 322 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 104/356 (29%), Positives = 155/356 (43%), Gaps = 54/356 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 + ++ GG SAE EVSL + A+++ V + Sbjct: 13 HIAVLLGGPSAEREVSLVTGAAYAAALERLGARVSRVD---------------------- 50 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 PGK Q++ A D++F +HG GEDG +QG+L Sbjct: 51 ---------------PGKDVAQVLTALAP------DLVFNGLHGRWGEDGCVQGVLETLG 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 L + S VLASA MDK +K +L AG+ + R + + P V Sbjct: 90 LAYTHSGVLASALAMDKAKSKAVLAAAGIPVPGGGLFDRHDVAQ------GHVMPPPYVV 143 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGIKGREIECAVLGNDN-PQA 241 KP +GSSVGVS V A + F +V+VE I G E+ AV+G N P+A Sbjct: 144 KPNAEGSSVGVSLVFEGANGPPRQLAAPDWAFGEQVMVEPYIPGLELAVAVVGESNGPRA 203 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI ++ FY YD KY + G+ V+PA I + D+ +A + LGC G+ R Sbjct: 204 LAVTEIRSSTGFYDYDAKY-SQGGSIHVLPAPIPDAVRDRALHLAKLGHTALGCQGVTRS 262 Query: 302 DVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 D + +V+ E+NT PG T S+ P+ +G+ + L+ ++E A R A Sbjct: 263 DFRYDDINDLLVLLEVNTQPGMTPTSLVPEQADHAGVSFDRLVFWIVEDAYARRFA 318 >UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacillaceae RepID=DDL_LACC3 Length = 357 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 83/355 (23%), Positives = 156/355 (43%), Gaps = 12/355 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG+S E VS+ S I +A+ + + + +A+ Sbjct: 1 MKIVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANT 60 Query: 64 PAHIALRPS---ATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + + + ++ QL D++F +HG GE+G +Q + Sbjct: 61 SKDLNISDAILTDEDINKLRPDGSTQLFGPNVMAICKAADIVFLALHGGDGENGKVQAVF 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + + GS LAS M+K +K ++ G+ + F R + Sbjct: 121 DINGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGFKEFKRDQGPKQTVP-----FDF 175 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP + GSSVG + ++E+ ++ F FD+ IVE+ GRE V+ N Sbjct: 176 PVVVKPTSGGSSVGTHIIHNQEELESGLEDVFRFDNSAIVEEFTPGREFSLGVV---NGH 232 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A + EI + S +Y + K+ + P + +++ ++ +AVQ LG R Sbjct: 233 AYSAIEIKVRSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQTMDVLGLQNYGR 292 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +D F + V + E N LPG T +S+ P+ +A G+ Y DL+ ++ L+ +A Sbjct: 293 IDFFANEKG-VWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIVNGKLKLYA 346 >UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteobacteria RepID=DDL_RHOP5 Length = 308 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 99/359 (27%), Positives = 167/359 (46%), Gaps = 60/359 (16%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++ V ++ GG S+E EVSL+S DA+++ F+V + + + + Sbjct: 3 KRKHVAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVARDIATVLDQLRP----- 57 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D ++HG GEDGS+QG+L Sbjct: 58 --------------------------------------DSALMMLHGHPGEDGSIQGVLE 79 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 +P+ S VLASA M KD+ K +++ AG+ +A +TL+R E P Sbjct: 80 TLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLSRDEIARGHVME------PP 133 Query: 182 LFVKPANQGSSVGVSKVTSEEQY--AIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 +KP GSSVGV +T + Q+ + + K++VE+ + G+E+ CAV+ Sbjct: 134 YVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDKLLVEKYVAGKELTCAVV---KG 190 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + + EIV FY Y+ KY +K V+PA++ P + ++R + + A+ LGC G++ Sbjct: 191 EPTDVIEIVPMVRFYDYEAKY-SPGASKHVLPASLLPFVYQEVRRLTLAAHVALGCRGVS 249 Query: 300 RVDVFLTPE----NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA-LER 353 R D +V E+NT PG T S+ P+L +G+ + +L+ ++E A L+R Sbjct: 250 RADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGITFDELVQWMVEDASLDR 308 >UniRef50_A6CDT2 D-alanine--D-alanine ligase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CDT2_9PLAN Length = 320 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 148/349 (42%), Gaps = 48/349 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 + ++ GG+SAE E+SL+S + + A+ V + D S L+ D Sbjct: 13 NIVVLSGGESAESEISLKSGETVARALSSRGHQV-----------KIVDPSLVDLDRFDW 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 DV+F +HGT GEDG++Q L Sbjct: 62 T--------------------------------GCDVVFLALHGTYGEDGTIQSTLDRLG 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G D S K +K +N ++ + ++ + +G PL V Sbjct: 90 IPYSGCDAATSKLAFSKSASKERFIQHNVNTPSYVLIHESDDAGR-IEQHARSMGYPLVV 148 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP QGSS+GV+ V S E+ A+ F +D I+E IKG E V+ + Q Sbjct: 149 KPDAQGSSLGVTIVKSPEELPQALARCFHYDSFGILESAIKGTEWTVTVVDD---QVLPL 205 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 +I +F+ Y+ KY ED + + + + I V A LG G+ RVD+ Sbjct: 206 IQIQTPHEFFDYEAKYT-EDSTQYLFEFDLPTNVIQAIIKTGVNACTALGTTGIVRVDLL 264 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + E+NT+PGFT+ S+ PK +G+ + +L + + L++ Sbjct: 265 VDRFQQPWVLEVNTIPGFTDHSLVPKAAAKAGIDFGELCEQALTNCLKK 313 >UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=A9WQG6_RENSM Length = 365 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 116/363 (31%), Positives = 176/363 (48%), Gaps = 46/363 (12%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + ++ GG S+EH+VSL S++ A V ID G+W V Sbjct: 34 KTIAVIGGGVSSEHDVSLASSEGTRAAAAALGHRVHFFLIDSDGEWSVDGVPG------- 86 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + L + D+ P+VHG GEDG LQG L Sbjct: 87 -------------------------TTAAWEKLRSCDLAIPMVHGAGGEDGVLQGFLETV 121 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE-------VES 176 + + GS VL+SA +DK VTK + G+ AP +T+ R ++ + Sbjct: 122 GVSYFGSGVLSSAVGLDKQVTKLVAHTVGVRTAPGLTIDATLRDQLAETPDQAENLLKSA 181 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE--FDHKVIVEQGIKGREIECAVL 234 K+ LP+FVKP GSS G+SKVT + A AV LA + V++E ++G+E++ VL Sbjct: 182 KIELPVFVKPLRGGSSFGISKVTEQLNLADAVKLAAHGPVEQDVLIEPEVRGKEVDVGVL 241 Query: 235 G--NDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 + + C +++ +F++ + KY + + +VPA I E + IRA A + Sbjct: 242 ELPDCSVIVGPCLQVLADSKEEFFSTEAKYSSTE-TRFLVPAPIGDEASAAIRAQAKAVF 300 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 LGC G+ARVD F+ + +NEINTLPGFT+ S P++W A+G+ Y L+ +IE A Sbjct: 301 TALGCRGLARVDFFVDDDGTATLNEINTLPGFTSHSQVPRIWAAAGVNYEGLVAIIIETA 360 Query: 351 LER 353 L R Sbjct: 361 LAR 363 >UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N436_9BACT Length = 702 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 158/356 (44%), Gaps = 55/356 (15%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 E ++ ++ GG S E E+SL+S + A+ FDV + + Sbjct: 313 EAPKINLLLGGASNEREISLKSGSAVAQALRNGGFDVTVTDVT----------------- 355 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + + DV++P++HG GEDG +Q ++ Sbjct: 356 ---------------------------ECRLLPEMREADVVYPVLHGGFGEDGRIQKVME 388 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 A L FVGS AS MDK TKRLL G+ A + +TR R E+ L LP Sbjct: 389 EAGLRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTRDRR------ELPQNLKLP 442 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L +K +GS+ G+ KV E++ A++ F +++VE+ I G EI ++ N + Sbjct: 443 LILKVPMEGSTFGIVKVERAEEWDAALEKEFAMAGELLVEEYIDGIEITVPIV---NGEV 499 Query: 242 STCGEIVLTSDFYAYDTKYIDEDG-AKVVVPAA-IAPEINDKIRAIAVQAYQTLGCAGMA 299 EI FY YD KY+ +DG + PA ++ E AV+ Y GC + Sbjct: 500 LPAIEIKSPHGFYDYDAKYVYKDGHTEYFCPARSLSAEQVADASRQAVKFYLGAGCRDIL 559 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 RVD + + + E N++PG T S+ PK + SG+ + + L+ A+ RH Sbjct: 560 RVDFIVGKDGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEKMTATLVYAAMRRHE 615 >UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFD6_KOSOT Length = 305 Score = 301 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 92/351 (26%), Positives = 167/351 (47%), Gaps = 53/351 (15%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + R+ +++GG S E +SL+S N+++A++K + V + Sbjct: 5 RRRITVLYGGLSKERPISLKSGSNVINALEKLGYIVDAFDLRAD---------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + L D++F +HG GEDG +Q +L + Sbjct: 49 --------------------------NITELAKLRDTDLVFIALHGKFGEDGKIQSLLEL 82 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 + ++GSD L SA C +K++T +LL + + + + T+T E+E P Sbjct: 83 FGIEYIGSDSLVSAICFNKNLTYKLLSNT-ITMPRWKTITSEE-------ELEGWKHFPA 134 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQA 241 +KPAN+GSS+GV + E+ + +I+E+ IKGRE+ +++ P Sbjct: 135 VIKPANEGSSIGVYICDTFEELQNKTTKVLKEYKTLILEEYIKGRELTISIIEKGGQPVV 194 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 E+ FY Y+ KY + +VPA I ++ ++I+ ++ + + LGC AR+ Sbjct: 195 LPILELKPKRRFYDYEAKYT-AGLTEFIVPAPIDDKLKEEIKKLSKRIFTALGCRHFARI 253 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 D L EN+ E+NT+PG T++S P +A+G+G+ +LI +++ AL+ Sbjct: 254 DGIL-KENQFYFLEVNTIPGLTDLSDLPVSARAAGMGFEELIDLIVKEALK 303 >UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aphidicola RepID=DDL_BUCBP Length = 309 Score = 301 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 91/349 (26%), Positives = 158/349 (45%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG S E +SL S NI++++ KS V + K Sbjct: 7 KIAVLLGGTSQERNISLISGYNILNSLLKSGIHAVAID-TKD------------------ 47 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P F +HG GEDG++Q +L+ N Sbjct: 48 ------------------------FPITQLPHQKFTKAFIALHGRDGEDGTIQSVLKYLN 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 +PF GS L SA ++K TK L + L + P++ + + + + + LGLP Sbjct: 84 IPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHINKHEFNKKFLQKFKKNISLLGLP 143 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP +GSS+G++ V S E A AF FD+ +++E+ I G E ++LG + Sbjct: 144 IIVKPNQEGSSIGITIVYSYETLYKACKTAFIFDNSILIEKFIYGEEYTISILGK---KI 200 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y++KY+ + P+ + +++ I + A+ + G RV Sbjct: 201 LPIIRICPENTFYNYNSKYLS-NRTTYFCPSGLNKLKELELKKITLTAWNIIDGTGWGRV 259 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV + +N+ + E NT PG T+ S++P + +G+ Y L+ +++ELA Sbjct: 260 DVIMDYKNKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQKILELA 308 >UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified Gammaproteobacteria RepID=A4A5G2_9GAMM Length = 315 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 91/335 (27%), Positives = 151/335 (45%), Gaps = 53/335 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 LR+ ++FGG S E +VSL SA ++ + ++ + L + W Sbjct: 10 LRIAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALDTGEPRWW-------------- 55 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + L D+ F I HG GEDG QG+L Sbjct: 56 ------------------------------ERLEDADIAFNIQHGVGGEDGVTQGLLASM 85 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + GSDVL SA MDK +K+L R GL A F + +E + F Sbjct: 86 GVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANFAMVDAHTDAAALLSEWGAA-----F 140 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP+ +GSS+G+S+V S + + A + A + ++ E+ I G E A+LG+ +A Sbjct: 141 IKPSAEGSSLGMSRVDSVDGFKAACEAAAVYGEGILAEEFIDGPEYTVAILGD---RALP 197 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 I + +FY Y+ KY + + +P ++ + + +A++A+ LGC+ RVD+ Sbjct: 198 PIRIEASREFYDYEAKY-KGNSTRYHIPCGLSDGEEETLCRLALEAFAALGCSIWGRVDL 256 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLG 338 E + E+NT+PG T+ S+ P +A+G+ Sbjct: 257 MRNRRGEFQLLEVNTVPGMTDHSLVPMAAKAAGMS 291 >UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteobacteria RepID=DDL_VIBC3 Length = 329 Score = 300 bits (768), Expect = 7e-80, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 176/351 (50%), Gaps = 29/351 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K + ++ GG S+EHE+SL SA I ++ + F V+ + + K+G + A YL Sbjct: 1 MTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYL- 59 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + + + +D + P +HG GE G +Q M Sbjct: 60 ------------------------DTNSATLNSDKASYPIDFVVPCIHGFPGETGDIQSM 95 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +A +P++G ASA +K +K + P++ LT+ +I A+ Sbjct: 96 LELAGIPYLGCGPEASANSFNKITSKLWYDALDIPNTPYLFLTQNTPSSIDKAKQAFGHW 155 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 +FVK A QGSSVG KVT+E+Q A A++ AF F +V+VEQ +K RE+E + N Sbjct: 156 GSIFVKAARQGSSVGCYKVTTEDQIAPAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGK 215 Query: 239 PQASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAA-IAPEINDKIRAIAVQAYQTLGCA 296 S GE++ FY+Y+ KY A+ V+ A + + + I+ A + + + Sbjct: 216 LYISKPGEVIAPEGTFYSYEEKYSANSHARTVLEAENLTEKHKELIQTYAERVFIHMKLR 275 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 ++R+D FLT E ++ +NE+NT PG T ISM+PK+ + +G +++ + + + Sbjct: 276 HLSRIDFFLTQEGQIYLNEVNTFPGMTPISMFPKMLEHNGHRFSEFLAQCV 326 >UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=DDL_BACFN Length = 324 Score = 300 bits (768), Expect = 7e-80, Method: Composition-based stats. Identities = 104/348 (29%), Positives = 175/348 (50%), Gaps = 30/348 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGID-KQGQWHVSDASNYLLNA 61 K + IV GG ++E VSL+SA+ I IDK ++++ ++ ++ ++ + + D S ++ Sbjct: 2 KRNIAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLQDGSKTPVDR 61 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 +D + + NG D + +HGT GEDG LQG Sbjct: 62 NDFSFM------------------------NGAEKVVFDFAYITIHGTPGEDGRLQGYFD 97 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P+ VLA+A DK V + L+ G+ I+ + L + +S +V K+GLP Sbjct: 98 MIRIPYSCCGVLAAAITYDKFVCNQYLKAFGVRISESLLLRQGQA--VSDEDVVEKIGLP 155 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDNPQ 240 F+KP GSS GV+KV + EQ A+ AF +V++E + G E+ C + Sbjct: 156 CFIKPNLGGSSFGVTKVKTREQIQPAIAKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSV 215 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 E+V ++F+ YD KY + PA I+ E+ +++ + Y LGC+G+ R Sbjct: 216 VFPLTEVVTHNEFFDYDAKY--NGQVDEITPARISEELTRRVQTLTSAIYDILGCSGIIR 273 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 VD +T ++ + E+NT PG T S P+ +A+GL D++T +IE Sbjct: 274 VDYIITEGEKINLLEVNTTPGMTATSFIPQQVRAAGLDIKDVMTDIIE 321 >UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=DDL_GRAFK Length = 326 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 154/350 (44%), Gaps = 29/350 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ I GG S+E+ +S+ S + +D ++ + I K + V+D Sbjct: 2 KKKIAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILKGEWFVVADDDT------ 55 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 P + + D +F +HGT GE+G LQ L + Sbjct: 56 -----------------PYPINKSNFTVKINDKVIQFDCVFNTIHGTPGENGLLQAYLEL 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P D SA +K +LR G+ A L + I+ E+ K+GLP Sbjct: 99 IGIPQTSCDYYQSALTFNKRDLISVLRPYGIKAATNYFLNK--DQEINTKEIVDKVGLPC 156 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQA 241 FVK GSS GV+KV +E++ A AF D + I+E + G E+ V+ A Sbjct: 157 FVKANRAGSSFGVTKVKTEDEIISAAKTAFTEDDEAIIESFLDGTEVSVGVITYKGKVLA 216 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI+ +F+ Y+ KY+ ++ + PA I+ E K++ IA+ Y+ L G++R Sbjct: 217 LPVTEIIPDGEFFDYEAKYL--GKSQEITPARISEEDTKKVQDIAIMIYKKLKMKGLSRS 274 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + E E E+NT PG + S+ P+ + +G+ DL IE AL Sbjct: 275 EFIF-HEGEPHFIEMNTNPGISQASILPQQAEKAGISLKDLFGSTIEAAL 323 >UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteobacteria RepID=DDL_ROSDO Length = 319 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 148/349 (42%), Gaps = 59/349 (16%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S E EVSL S + A+ +DVV + + DA Sbjct: 23 KVAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGP-------- 74 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 D + +HG GEDG +QG+L Sbjct: 75 -----------------------------------DAVLNCLHGRWGEDGCVQGLLEWMG 99 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ S VLASA MDK +K AGL + P + A+ + + P V Sbjct: 100 VPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAAD------VRMGHVMQPPYVV 153 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP N+GSSVGV V + + +V+VE GRE+ V+G+ +A T Sbjct: 154 KPNNEGSSVGVYLVHEAANGPPQLSE--DMPQEVMVEAFAPGRELTTTVVGD---RALTV 208 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 +IV T +Y YD KY G+ VVPA I +I D A++A+ LGC G++R D Sbjct: 209 TDIV-TDGWYDYDAKY-KPGGSHHVVPADIPADIFDLCMDYALRAHHALGCRGVSRTDFR 266 Query: 305 LTPEN---EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +++ E NT PG T S+ P+ +G+ + L ++E A Sbjct: 267 WDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDA 315 >UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYH7_9PROT Length = 307 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 108/357 (30%), Positives = 160/357 (44%), Gaps = 62/357 (17%) Query: 1 MEKL-RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M++ R G++ GG SAE EVSL+S ++DA+ + D V GID Q W Sbjct: 8 MQRFGRTGVLMGGTSAEREVSLRSGAAVLDALRAAGVDAV--GIDLQQNW---------- 55 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + +D F +HGTLGEDG +QG+ Sbjct: 56 -------------------------------ADQIAKAAIDTAFIALHGTLGEDGCVQGL 84 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L + +P+ GS V+ASA CM+K + K++L AGL+ I + EV Sbjct: 85 LEIMGIPYTGSHVMASALCMNKRLCKQVLGQAGLSTPMDIRI-----------EVTGPER 133 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKP +GSSVG+ +++S++++ L + + E + G EI +VL Sbjct: 134 YPVFVKPVAEGSSVGLHRISSQQEWQA---LNIQSPAAWMAEMPVNGVEIAVSVLAG--- 187 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A E+ S Y Y +KY + PA + E A +A GC G Sbjct: 188 VALMPVEVAPKSGVYDYASKYTV-GATEYFCPARLPMETVRYCMDCAEKAVAACGCTGAP 246 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 RVD+ + E VI EINTLPG T S+ PK +G+ + L R++E A + Sbjct: 247 RVDMIVGSGGEAVILEINTLPGMTATSLLPKAAAVAGIDFQTLCLRILETASLEYGQ 303 >UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=DDL_COPPD Length = 304 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 98/349 (28%), Positives = 164/349 (46%), Gaps = 46/349 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + + ++FGG S E E+SL+S +NI + V L Sbjct: 1 MNIVVLFGGTSPEREISLKSGENIAATLRARGHQVETLD--------------------- 39 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 VP E + D +FP +HG GEDG +QG+L + Sbjct: 40 -------------TAVPNFVEQLMQ--------LKPDCVFPALHGADGEDGKIQGLLSIL 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+VGSDV AS MDK +TK + +G+ FI + + + +VE KLG P Sbjct: 79 HIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVYDPH-LVPDYWDVERKLGSPFI 137 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQAS 242 VKP + GS++G+S V S +Y +A++ AF F ++++E+ I G E+ + + Sbjct: 138 VKPCDVGSTIGLSLVRSASEYEVALEEAFRFSDRLLLEEFIDGFEVTVGLFRLGGDFLVL 197 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 +V + YDTKY GAK V I+ E +++ + + + + +G G+AR+D Sbjct: 198 PPIYVVKPDRIFDYDTKY-KPGGAKHVYDLPISVEARERLTSYSKRICKIVGIGGVARLD 256 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + + + EIN++PG T S+ P + +G + + + LI+ AL Sbjct: 257 YIV-KDETPYLLEINSIPGMTAESLVPDEVRHAGRDFGEFLEDLIKDAL 304 >UniRef50_C0BG03 D-alanine--D-alanine ligase n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BG03_9BACT Length = 328 Score = 297 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 172/354 (48%), Gaps = 29/354 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K ++G+V GG ++E ++SL S K + D +D+S ++V L+ I+ ++ ++ N Sbjct: 2 MGKKKLGVVCGGFTSEFQISLLSGKTVFDNLDRSLWEVFLITIN---------SNEWVAN 52 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D+ H ++ Q G + +DVIF +HG GE+G L + Sbjct: 53 DDNGNHYSVSKGD--------------FTLQIGNDIVFLDVIFNSIHGAPGENGQLAALW 98 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + N+PF D SA +K +LR+ + A ++ R ++ I ++E +G Sbjct: 99 ELLNIPFSSCDSYTSALTYNKRDCLSVLREINIPTAKHFSIDRNDK--IDLEKIEKAVGF 156 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNP 239 P FVK GSS GV KV + A+ AF+ D +VI+E ++GRE+ V + Sbjct: 157 PCFVKANRAGSSFGVFKVKKKSNLEQALQKAFQEDSQVIIESALEGREVSVGVAKLRGDI 216 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + EI+ ++F+ Y KY E ++ + PA I E +++ + + Y LG G+ Sbjct: 217 KVLPVTEIITENEFFDYAAKY--EGKSQEITPAQIPIEWKEEVEKRSKEIYHKLGLKGVV 274 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 R + + + EINT+PGFT S+ P+ A G+ ++ L+ L++ Sbjct: 275 RSEFIFV-DGVPHLLEINTVPGFTQKSIIPQQALAMGIELSEFFNLLLLEVLDK 327 >UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriaceae RepID=C7NBV7_LEPBD Length = 308 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 165/353 (46%), Gaps = 49/353 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVG++ GG S E EVSL++ IV +++ +++V + ID + Sbjct: 1 MSKLRVGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSE-------------- 46 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + +D ++ +HG GEDG +Q +L Sbjct: 47 ---------------------------KEVFEKVKELNLDFVYIALHGVFGEDGRIQAIL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + + G V++SA CMDK+ +KR++ G+ IA + ++ + F ++ +LG Sbjct: 80 QSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGE--TVDFETIKKELGN 137 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 + VKP + GSS+GVS V ++E+ ++L F D + ++E+ + G EI V+ + + Sbjct: 138 RVVVKPNSGGSSIGVSFVENQEELEKGLELVFGMDKEALIEEVLHGVEISVPVI---DGK 194 Query: 241 ASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 I L D++ Y++KY + V E+ +I A +Y L C G A Sbjct: 195 VFPTIRIEALAGDYFDYESKYAKGGANEYVF--EFPEEVQAEINKFAKDSYYGLKCEGFA 252 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R+D + E E+NT PG T+ S+ PK + G Y + LIE +++ Sbjct: 253 RIDFMVVNEETPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTLDLLIESSIK 305 >UniRef50_UPI0001AF4ABE D-alanine--D-alanine ligase n=1 Tax=Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191 RepID=UPI0001AF4ABE Length = 301 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 156/353 (44%), Gaps = 60/353 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K V ++ GG S E ++S+ + + A+ + +D ++ +D+ + + Sbjct: 1 MKK--VLVLCGGFSKERDISMVTGRACAAALKDAGYDAYIIDVDRTLPEKLRQINP---- 54 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F +HG GEDGS+QG+L Sbjct: 55 ---------------------------------------DVCFNALHGPYGEDGSVQGLL 75 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ S V AS+ MDK TK + G++IA + A ++ ++ Sbjct: 76 NIMGIPYTHSGVGASSIAMDKIKTKAIACQHGIHIAEDQLIDYATYKSM-------EIPF 128 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P +KP N GSS+ + + + A+ ++ ++E+ IKGRE+ V N + Sbjct: 129 PYVLKPVNDGSSIATYIFNTPDA-EKLSEQAWIYNTHAMMERYIKGRELTVTVFMN---K 184 Query: 241 ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 T EI+ ++D FY + KY D G+ +PA I + + A+ + LGC G+ Sbjct: 185 PVTVTEIIPSTDHQFYNFHAKY-DTGGSLHSLPADIPDKAFNICMENALAMHILLGCRGI 243 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +R D L + EINT PG T S+ P+ +G+ +T L++ L++ A Sbjct: 244 SRSDFILEENTGNIFFLEINTQPGMTPTSLVPEQLAWAGISFTQLVSLLVDEA 296 >UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q872P6_NEUCR Length = 346 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 101/361 (27%), Positives = 169/361 (46%), Gaps = 35/361 (9%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ---GQWHVSDASNYLL 59 K + IV GG S E++VS+ + I +D++R+++ + I + G +H++D Sbjct: 6 KKNIAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAGWYHLTDND---- 61 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 Q+P + G+ + D+ + +HG GE+G LQG Sbjct: 62 -----------------KQIPVDRNDFSVTLSTGEKI-QFDLAYISIHGNPGENGVLQGY 103 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAG-LNIAPFITLTRANRHNISFAEVESKL 178 + LP+ SA +K ++R G + +A L R + + + Sbjct: 104 FDMLGLPYTSCGFYTSALTANKGHCNPVVRSFGVVEVAKSRLLHRNQISALDPEALLFEF 163 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD--HKVIVEQGIKGREIECAVLGN 236 LP+FVKPA+ GSSV +KV S EQ AV+ A D +V+VE+ I+GRE C V+ + Sbjct: 164 DLPVFVKPASGGSSVATTKVKSIEQVVQAVEDAMREDGNGQVLVEEFIEGREFNCGVIRD 223 Query: 237 DNP--QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 E++ S+++ Y+ KY + V PA + +++D+I+ + Y Sbjct: 224 AEGWLHVFPITEVIPHGDSEYFDYNAKY--NGSSSKVTPAEVETQVSDRIKDTSTMLYDL 281 Query: 293 LGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L C G+ R D PE + E+NT+PG T S+ P+ +A+G+ DL +IE AL Sbjct: 282 LDCRGVVRFDYRYNPELYALYFLEVNTIPGQTPESIVPQQARAAGISTADLYHMVIECAL 341 Query: 352 E 352 Sbjct: 342 A 342 >UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FWP4_9CLOT Length = 293 Score = 293 bits (750), Expect = 8e-78, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 159/343 (46%), Gaps = 50/343 (14%) Query: 10 FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL 69 GG S+E E+SL+S + +++D+ +++ + + ID++ Sbjct: 1 MGGISSEREISLKSGAGVFESLDREKYEPIKVVIDEK----------------------- 37 Query: 70 RPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVG 129 + ++P VD F +HG GEDG +Q +L ++P+ G Sbjct: 38 ---TDIITKIPDD----------------VDFAFLALHGKFGEDGCVQSVLETRDIPYSG 78 Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQ 189 L+SA CMDK+++K++ + +G+ A +IT+ I + +E +G P+FVKP + Sbjct: 79 CGPLSSAMCMDKNISKKICKASGIPTADWITVKSIE--EIDYDRIEE-MGYPVFVKPNSG 135 Query: 190 GSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVL 249 GSSV + + AV E D +V++EQ + G E +L + + I Sbjct: 136 GSSVATFMIKEKAGIEDAVRQGLEVDTEVMIEQYLPGEECTSFIL---DGEVFPTVSIKS 192 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 +F+ ++ KY ++GA V + + +K+ + + C RVD + Sbjct: 193 EQEFFDFEAKYSSDNGAVEEV-VYLEESLQNKLNGYSRMCWDAFNCRAYVRVDFII-SNG 250 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + E+NTLPG T S+ P+ A G+ Y+ L+ +LI +L+ Sbjct: 251 VPYVLELNTLPGLTATSLIPRSAAARGISYSQLLDKLISCSLK 293 >UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsieae RepID=DDL_RICCK Length = 354 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 169/351 (48%), Gaps = 56/351 (15%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 K + +V GG SAE EVSL S+K + A+ + V + + + + + Sbjct: 54 GKKHIALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFKLQEIKP----- 108 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D++F +HGT GEDG L G+L Sbjct: 109 --------------------------------------DIVFNCLHGTYGEDGCLSGLLN 130 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P+ S VL+SA DK ++ +N+A I + +++ I + P Sbjct: 131 IMRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSDNIKI------EPMKRP 184 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +KP QGSS+G+ + E+ + A + F + +VI+E+ IKGRE++ AVL N +A Sbjct: 185 YVIKPITQGSSIGIEVIFEEDDFNFA-NYDFPYGDQVIIEKYIKGRELQVAVL---NGKA 240 Query: 242 STCGEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI +L + FY Y+TKY E A+ + PA I + DK+ + + Y+T+ C G AR Sbjct: 241 LGVLEIKLLKNRFYDYETKYT-EGFAEHLCPAPIPTNLYDKLLIESEKIYKTMNCKGPAR 299 Query: 301 VDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 V+ L N++ EINT PG T +S+ P++ +G+ +T+LI +I+ A Sbjct: 300 VEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKAA 350 >UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteobacteria RepID=C6XGZ9_LIBAP Length = 300 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 162/348 (46%), Gaps = 57/348 (16%) Query: 7 GIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAH 66 ++ GG S+E EVSL S K A++ + F V + +D+ ++ Sbjct: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48 Query: 67 IALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 D+ F ++HG GEDG +Q +L + +P Sbjct: 49 ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKP 186 + S +LASA MDK +K+++ G+ + P I + R + + + P +KP Sbjct: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKP 132 Query: 187 ANQGSSVGVSKVTSEEQ--YAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 GSS+G+ + ++ + ++ ++++EQ + G E+ C V+G+ + Sbjct: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDV 189 Query: 245 GEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 EI V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 190 TEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Query: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 >UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=2 Tax=Streptococcus pneumoniae RepID=C1C760_STRP7 Length = 321 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 165/349 (47%), Gaps = 36/349 (10%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ +++GG S E EVS SAK I ++ +DV+ + + + + + + Sbjct: 5 KKIVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGE---------- 54 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + S L + + +ID VD++F HG +GE+G LQ + V Sbjct: 55 -----IEKSERGLNKQKVEIGSGIIDV-----CRKVDIVFLATHGGIGENGKLQAIFDVE 104 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + + G+ L++A MDK ++K + G+ A + + R ++ P+ Sbjct: 105 KIDYTGNSFLSTAISMDKKLSKIVASSVGIKCASNLMVDRIQAND-----------FPIV 153 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G+ + +++Q+ I E VE+ IKGRE +LG Sbjct: 154 IKPIRSGSSKGIKILQNKKQFDIYYKEHPELGSF-FVEKYIKGREFSVGILGE---TVLP 209 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 EI + + FY Y+ KY A+ VVPA I+ ++ ++ A + ++ LG +R D Sbjct: 210 VIEIKVKNGFYDYNNKYTV-GAAEEVVPAKISEKLTHTLQKSAYKIHKALGFNVYSRTDF 268 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + + +V E N+LPG T S+ P+ +A+G+ + +L R+IEL+ E Sbjct: 269 IVDEKGDVYFIESNSLPGMTKTSLLPQEAKAAGIDFPNLCERIIELSRE 317 >UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=DDL_PORG3 Length = 330 Score = 290 bits (742), Expect = 7e-77, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 161/354 (45%), Gaps = 31/354 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQ-WHVSDASNYLL 59 M+K V ++ GG S EH VSL+SA I+ + F L+ I++ VS+ L Sbjct: 1 MKKPIVAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERDRWSVRVSEQREVPL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + +D + D + +HGT GE+G LQG Sbjct: 61 DKNDFSF------------------------DLDDERIRFDYAYITIHGTPGENGLLQGY 96 Query: 120 LRVANLPF-VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L + +P+ G D L + +K V R L G+ IA + LT + A++ +++ Sbjct: 97 LDMIGIPYNTG-DTLVESLTFNKYVCNRFLSGFGIRIADSMRLTGRDTQP-DVADLTARM 154 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA-VLGND 237 GLPLFVKP GSS+ +KV Q A+ AF +V++E+ I G E+ C L Sbjct: 155 GLPLFVKPNVGGSSIATTKVVEAAQLLPAIGQAFSEGEEVMIERLICGTEVTCGAFLRKK 214 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 A E+V ++F+ +D KY + + PA I+ E I+ + + Y+ L G Sbjct: 215 EVVALPVTEVVAHNEFFDFDAKY--NGAVEEITPARISDEATRLIQTMTARIYELLNARG 272 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + RVD + + + E+NT PG T S P+ +A+ + +++ +I L Sbjct: 273 IIRVDYIIEADGIPTLLEVNTTPGMTPTSFIPQQVRAAEMDMKEVLCTIIRDGL 326 >UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMF6_9DELT Length = 300 Score = 290 bits (742), Expect = 7e-77, Method: Composition-based stats. Identities = 101/349 (28%), Positives = 160/349 (45%), Gaps = 56/349 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG S E +VSL A I +A+ +V+ L + Q V+ A Sbjct: 1 MRVLLIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELVNKARE------- 53 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 D +HG GEDGS+QG+L Sbjct: 54 -----------------------------------ADAAIINLHGAPGEDGSIQGVLEDV 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 LP+ GS V S ++K ++K+ + GL R + P+ Sbjct: 79 GLPYQGSGVRGSFLALNKALSKQFYANHGLRTPKGGLYFPQGR--------LHHVPPPVI 130 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 KP GSS+ + ++E+ ++ + +H+++VE+ I G E+ CAVL N+ Sbjct: 131 CKPNQGGSSLDMQIFYNQEEMYSFLNQV-DSEHEILVEELINGHEVSCAVLDNE---PLP 186 Query: 244 CGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 I DF+ Y++KY D DGA + PA I+ E + I+ +++QA++ LG +R D Sbjct: 187 PILIQPVKGDFFDYNSKY-DPDGAVEICPAPISQEASRSIQEMSLQAHRILGLRHYSRSD 245 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L ++ + I E NTLPG T S+ PK Q +G+G+T+LI RL+ LAL Sbjct: 246 FMLDQQDNIYILETNTLPGMTRTSLVPKAAQQAGIGFTELIARLLSLAL 294 >UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HX62_9BACT Length = 323 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 116/348 (33%), Positives = 161/348 (46%), Gaps = 53/348 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG S E E+S S K + +A+ K+ F+V D+ ++D S Sbjct: 13 RVAVLAGGDSDEAEISRVSGKAVAEALRKAGFEVGEFEADRSLAKTLTDFSP-------- 64 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 DV F HG GE+G+LQG L Sbjct: 65 -----------------------------------DVAFLATHGGGGENGTLQGFLETMK 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA M K ++ L R+ GL + LT A+R SF P V Sbjct: 90 IPYTGSGVLASAIGMSKMRSRALFRERGLAVP----LTYAHRTEESFNPGYISFDPPYMV 145 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP GSS+GV +V E A AV A + H V+VEQ I GREI+ A+L Sbjct: 146 KPEAAGSSIGVKRVLRREDLADAVSEAGRYSHWVLVEQLIPGREIQSAILSGRY---LGA 202 Query: 245 GEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ FY Y +KY+ G++ + PA + P+ + ++ I ++A + L G R+D Sbjct: 203 IEIIPDKAEPFYTYASKYVP-GGSRHISPAPLTPDESSELSRITIEACRVLDVRGACRLD 261 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L E VI EINTLPG T S+ P++ GL +TDLI LI A Sbjct: 262 TILNDEGVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLIIELIATA 309 >UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus Pelagibacter RepID=DDL_PELUB Length = 304 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 154/350 (44%), Gaps = 50/350 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K ++ I+ GG S E +SL + K + + K+ + V++ DK +++ Sbjct: 1 MTK-KILILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKP---- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DVIF +HG GEDG +Q +L Sbjct: 56 ---------------------------------------DVIFNALHGQFGEDGYIQAIL 76 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S V+AS+ MDK+++K++ + +I +E L Sbjct: 77 ETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYIKFNHKKNKLNIIKLIEKNLKF 136 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP N+GSSV V + + + +++++E+ I GREI+ A++ N + Sbjct: 137 PVVVKPINEGSSVHVYICDKTNILKN-LKVLKSY-NEILIEEFIPGREIQVAIMNN---K 191 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + E+ FY Y+ KY K ++P ++ KI IA A++ +GC G+ R Sbjct: 192 SLGAIELEPRRKFYDYEAKYNSSAKTKHLIPVDLSKNNLAKITGIARAAHKIIGCKGVTR 251 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 D + + EINT PG T +S+ P++ + G+ + LI +++ A Sbjct: 252 SDFKFF-NGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWILKDA 300 >UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LL63_9FIRM Length = 311 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 148/345 (42%), Gaps = 46/345 (13%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 V ++ GG S E ++S ++ I+ A+ + V + Sbjct: 8 VAVLMGGVSREADISRKTGTAILQALLSLGYHAVKV------------------------ 43 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 E+ +V+F +HG GEDG++Q +L ++ + Sbjct: 44 ------------------EYNPSCVLKQLKAVGAEVVFIALHGKYGEDGTIQSILELSKI 85 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 P+ GS V +SA MDK ++ R+ +DAG+ +A N + +E P+ +K Sbjct: 86 PYTGSGVSSSAITMDKIISSRVFKDAGVRMAFSKPYYLKNGIDTVAESIEKNFKFPVVLK 145 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 PA +GS++G+ V +E+ A+ F + +++ E + G+E AVL N +A Sbjct: 146 PACEGSTIGLEIVYEKEKLKEALKRVFAIESRILAEAYLDGKEFTIAVL---NGKALPII 202 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 +I S Y + +KY +VPA + D++ +A+ Y+ C+G+ R D Sbjct: 203 QICPHSGQYDFHSKYTS-GATDYIVPAPLPGAAADEMTRMAILGYEAAECSGVVRFDFRT 261 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + E N++PG T S+ PK A G+ + L ++ A Sbjct: 262 DKRGTPFLLEANSIPGMTETSLVPKAAAAIGMDFPSLCENILLKA 306 >UniRef50_C0VTV5 D-alanyl-alanine synthetase A n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VTV5_9CORY Length = 315 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 129/331 (38%), Positives = 188/331 (56%), Gaps = 26/331 (7%) Query: 28 VDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQL 87 +D +D DV +GI + G W D P H+ ++ + H++++ Sbjct: 1 MDHLDD--VDVFPVGITRDGTWTTGD----------PRHMTETLPEVTVEREVFLHKNEI 48 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + L TVDVIFP++HG GEDG++QG+ ++ +P+VG+ VLASA MDK TK+L Sbjct: 49 RLLETSEVLATVDVIFPVLHGLNGEDGTIQGLFELSGVPYVGNGVLASACGMDKQYTKKL 108 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AGL I + L + L P++VKPA GSS+G+S+V A Sbjct: 109 CKLAGLPIGKDLVLEGGEEF------IPGTLNFPVYVKPARGGSSIGISRVEDVSGIDEA 162 Query: 208 VDLAFEFDHKVIVEQGIKGREIECAVLG--NDNPQASTCGEIVLTSD----FYAYDTKYI 261 + LA E D KVI+E+ IKG E+EC VL + A+ E++ T D FY + KY+ Sbjct: 163 IRLARESDPKVIIEEEIKGIEVECGVLEYPDGRVVAAAPAELIGTEDGEAGFYDFSAKYL 222 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 D + +PA ++ E +++ IAVQ ++ L C G+ARVD F+T VINEINTLPG Sbjct: 223 DGQVSAH-IPARLSEEETARVKEIAVQTFKALNCNGLARVDFFVTEHG-PVINEINTLPG 280 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALE 352 FT ISMYP+++QA G+ Y DL+ LIE AL Sbjct: 281 FTPISMYPQVFQAEGISYGDLLHILIEQALA 311 >UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae RepID=DDL_VIBVY Length = 331 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 103/355 (29%), Positives = 170/355 (47%), Gaps = 28/355 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-SRFDVVLLGIDKQGQWHVSDASNYLL 59 M + V ++ GG S+EHE+SL S++ + + +V+ + I +G + + YL Sbjct: 1 MMR-NVLLLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYL- 58 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + + + +D I P +HG GE G +Q + Sbjct: 59 ----------------------DIHTKSVKSDEFNESIDIDFIVPCIHGFPGETGDIQSL 96 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 +A +P++G AS+ +K +K G+ P++ LT N + + Sbjct: 97 FELAGIPYLGCGPEASSNSFNKITSKLWYDAIGIPNTPYLFLTENNEESHQLSREAFDKW 156 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 LFVK A QGSSVG VT+ EQ + A+D AF F H+V+VE+ +K RE+E + N Sbjct: 157 GKLFVKAARQGSSVGCYSVTNIEQLSDAIDKAFGFSHQVLVEKAVKPRELEVSAYEMNGQ 216 Query: 239 PQASTCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAA-IAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY+YD KY + V A + + I+ + + ++ + Sbjct: 217 LHISKPGEIIAPDGAFYSYDEKYSAGSHSITEVEAKNLTEQQLATIQLCSEKVFRQMNLR 276 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 ++R+D FLT E E+ +NE+NT PG T ISM+PK+ Q +G + + + IE +L Sbjct: 277 HLSRIDFFLTSEGEIYLNEVNTFPGMTKISMFPKMLQHNGHKFHEFLADCIERSL 331 >UniRef50_A4Y6E2 D-alanine--D-alanine ligase n=18 Tax=Shewanella RepID=DDL_SHEPC Length = 337 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 113/355 (31%), Positives = 181/355 (50%), Gaps = 26/355 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAI-DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M ++ + ++ GG SAEH++SL SA ++ +F V+ + +DK GQ+ + + L Sbjct: 1 MSRINLLLLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCEL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + A VD + P +HG GE G +Q Sbjct: 61 TNNREIRFRDETKAP----------------------WPVDYVIPCIHGYPGETGDIQSY 98 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 + LP+ G + AS+ C +K K G+ P+I L + + IS A+ Sbjct: 99 FNLIQLPYFGCESEASSNCFNKITAKMWFSALGIPNTPYIFLHQYDDEAISQAQTALANW 158 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 +F+K A+QGSSVG KV + A + AF + V+VE+ IK RE+E AV N Sbjct: 159 GSIFIKAASQGSSVGCYKVDDSSKVAQVLKDAFGYAPYVVVEKTIKARELEVAVYEYNGE 218 Query: 239 PQASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPA-AIAPEINDKIRAIAVQAYQTLGCA 296 A+ GEI+ T+ FY +D KY A+ V A ++ E++++IRA A++A++ + Sbjct: 219 IVATLPGEIICDTNTFYTFDEKYAKSSKARTDVVAKDVSVELSEQIRAYAIKAFKGMKLR 278 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 ++R+D FLT ENE+++NEINT PG T ISM+PK+ Q G +T+ ++ +I L Sbjct: 279 HLSRIDFFLTAENEILLNEINTFPGSTPISMFPKMLQNHGHDFTEYLSLVINSQL 333 >UniRef50_Q60GK8 D-alanyl-D-alanine ligase n=2 Tax=Streptomyces RepID=Q60GK8_STRLA Length = 345 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 145/349 (41%), Gaps = 8/349 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+ I+ GG+S E +VSL S ++ A+ + +V+L+ G+ ++ + D Sbjct: 1 MRIVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPA-AGEPVLAGPLHPGDVVDG 59 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P+ + + L D++F +HG GEDG +Q L A Sbjct: 60 FEVGKEPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEAA 119 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + F G+ A AA +K+ + +L AG+ + A G P+ Sbjct: 120 GVRFTGAGSTACAAAWNKERAQAVLAAAGVPVTERALWPAAADEVPKEVRPLVAAG-PVV 178 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 KP GSSV V + S + ++VE + GRE V+G Q Sbjct: 179 AKPVADGSSVSVHRADSLAELERLAPQMRADGGDLLVEPFLSGREFTVGVVGG---QVLP 235 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC--AGMARV 301 EI L++ + Y KY V PA I E +++ +A++A++ LG +R Sbjct: 236 VIEIELSTPLFDYAAKYQ-PGAVSEVCPARIPEEFASRLQQLALRAHEALGFGPHTYSRA 294 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 D E + E+N LPG T S+ P +G Y DL R++ LA Sbjct: 295 DFRCDAAGEPMCLEVNALPGLTATSLLPLGASGAGWTYADLAERIVSLA 343 >UniRef50_C3WFS8 D-alanine-D-alanine ligase n=6 Tax=Fusobacterium RepID=C3WFS8_FUSMR Length = 288 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 86/346 (24%), Positives = 146/346 (42%), Gaps = 61/346 (17%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ + GG S+E EVSL+S I++++ +D + + ++ Sbjct: 1 MKIAVFMGGISSEREVSLRSGAAILESLQAQGYDAYGVDVTEK----------------- 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + D+ + HG GE+G+ QG+L + Sbjct: 44 -------------------------NLVSAFTENEYDLAYIAFHGGYGENGTFQGLLDML 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 P+ GS + SA MDK TK + G+ A ++ VE P+ Sbjct: 79 GKPYTGSGAMESAITMDKAYTKAVANSVGIKTAK------------TYNCVEEIKDFPVV 126 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP+ GSSVG+ ++E+ A+ K ++E+ I+G E+ VL N + Sbjct: 127 VKPSRDGSSVGIYFCNTQEEVREALRAL--EGRKPLIEEMIQGEELTVGVL---NGEGLG 181 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 I+ + FY Y++KY G+ PA I DK AV+ + +G G++R D Sbjct: 182 VLRIIPKNKFYDYESKY-AAGGSIHEYPAKIDKAAYDKAMENAVKIHNVIGLKGISRSDF 240 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 L + EV E+NT PG T S+ P L G + DL+ +++ Sbjct: 241 ML-KDGEVYFLEVNTCPGMTKTSLIPDLGTLKGYTFDDLVKIMVDT 285 >UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira RepID=C0QV33_BRAHW Length = 328 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 167/349 (47%), Gaps = 43/349 (12%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 + ++ ++ GG S+E EVSL+S +N+ A+ + + L++ Sbjct: 16 KNKKIAVLHGGLSSEREVSLRSGQNVYKALTS---------------FDEIKDNCILIDV 60 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D + + + ++ + I+HGT GEDG++QG+L Sbjct: 61 KDSYELVKKLKENN-----------------------IEYCYNILHGTSGEDGTVQGLLE 97 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS-FAEVESKLGL 180 N+ + G ++L SA CM+K TKR+ + + ++ A F+ L N S Sbjct: 98 SLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFMLLKDVKEINDSGIKGSALTFNF 157 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDN 238 PL +KP + GSSVGV + ++ ++ V + ++ + E IKG+EI ++ ++N Sbjct: 158 PLILKPISDGSSVGVHLIKTKTEFESVVSSIKDSENYFL-EPYIKGKEITVGLVKQDDEN 216 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 I ++ Y Y+ KY ++ +PA ++ EI +K+ +AY+ LGC+G+ Sbjct: 217 IYVFPILGINSKNEIYDYEAKYTP-GKTEMEMPAKLSKEIENKVIETCKKAYKVLGCSGL 275 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 +R+D + +NEV + E+NT G TN S P + + L + DL+ ++ Sbjct: 276 SRIDAIVGNDNEVYLMEVNTQGGMTNTSDIPAMAKHINLDFNDLVLYIL 324 >UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT Length = 332 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 103/354 (29%), Positives = 171/354 (48%), Gaps = 36/354 (10%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWH--VSDASNYLL 59 K + IV GG S+EH+VS++S + + DK R+++ ++ + K W+ + D S + Sbjct: 4 SKRTIAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDV-KGIDWNVELPDGSLAPI 62 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + +D + + D + +HG GE+G +QG Sbjct: 63 DKNDFSFV------------------------MNGERVEFDYAYITIHGQPGENGVMQGY 98 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 + +P+ VL A DK V LR G+ +A I L R ++ AE+E +LG Sbjct: 99 FDLIQIPYSTGGVLVEALTFDKYVLNNYLRGFGIKVADSILLRRGEEYDE--AEIEKRLG 156 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDN 238 +P FVKPA GSS GVSKV + +Q A A+ +AF +V++E + G EI V D Sbjct: 157 MPCFVKPAADGSSFGVSKVKNIDQLAPALRVAFMQSDEVMIEAFMDGMEISQGVYKTKDK 216 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 E+V +++F+ Y+ KY + + PA ++ E ++ A Y L G+ Sbjct: 217 AVVFPATEVVTSNEFFDYNAKY--NGQVEEITPARMSDETAKRVAAETSCIYDILHANGI 274 Query: 299 ARVDVFL--TPENEVVIN--EINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 R+D + + + VIN EINT PG T S P+ +A+GL ++++ ++E Sbjct: 275 IRIDYIISKDKDGKDVINMLEINTTPGMTVTSFIPQQVRAAGLDIKNVLSDIVE 328 >UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B1ZUU9_OPITP Length = 311 Score = 280 bits (717), Expect = 6e-74, Method: Composition-based stats. Identities = 107/361 (29%), Positives = 164/361 (45%), Gaps = 52/361 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ + + GG S+E EVSL S + A++KS F V ID Sbjct: 1 MDSPVIAVFSGGTSSEREVSLGSGQACAAALEKS-FRVERFQIDAD-------------- 45 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 A P +H V+F +HGT GEDG +Q +L Sbjct: 46 ------------ALPAGLDPQRH-----------------VVFSTLHGTFGEDGGMQRLL 76 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 A + + G D ++SA MDK +TK G+ + P +T A + +V + G Sbjct: 77 DAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKKPRP--EQVIEQFGE 134 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 + VKP +GSSVG++ V S E+ +D+ + + I+E+ I GRE+ VL N + Sbjct: 135 RVVVKPNAEGSSVGLNLVGSREELTRVLDVI--QNGRWIIERRIFGRELAVGVL---NGR 189 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EI S Y Y +KY + + PA + + KI+A A A+ GC AR Sbjct: 190 AMGVVEIRPKSGVYDYASKYT-KGMTNYLAPAPLDAALTQKIQAAAQTAFAACGCRDYAR 248 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VD L ++E+ + EINTLPG S+ P + G+ +T L+ ++ A++R A A Sbjct: 249 VDFILGDDHELYLLEINTLPGMKETSLLPMSARCEGIDFTALVKAMVTPAVQRFHAARAS 308 Query: 361 K 361 + Sbjct: 309 R 309 >UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella RepID=DDL_FRAP2 Length = 297 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 153/350 (43%), Gaps = 55/350 (15%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K ++ +++GG S E EVSL+S K ++D++ +D V L Sbjct: 1 MQKEKIVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLD------------------ 42 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + ++ P D F +HG GE+G + +L Sbjct: 43 --------------------ASSKDLVVKLLELNP----DKCFIALHGEDGENGRVAALL 78 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + GS + + MDK ++K +L + LT ++ Sbjct: 79 ELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLT-------DRLVEADEISF 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP++ GSS+ KV S E+ A A + +V++EQ + G+EI A++ ND Sbjct: 132 PVAVKPSSGGSSIATFKVKSLEELENAYQQASKHG-EVMIEQWVTGKEITVAIVNND--- 187 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + I ++FY Y++KY + P+ + + ++R +A +AY LGC G AR Sbjct: 188 VYSSVWIEPLNEFYDYESKY--SGKSIYHAPSGLCEQKELEVRQLAKKAYDLLGCKGHAR 245 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 VD + + I EIN+ PG T S+ PK A G+ + + ++E A Sbjct: 246 VDFIYDDKGDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQA 295 >UniRef50_A1SMF1 D-alanine--D-alanine ligase n=1 Tax=Nocardioides sp. JS614 RepID=A1SMF1_NOCSJ Length = 311 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 118/347 (34%), Positives = 163/347 (46%), Gaps = 44/347 (12%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV +V GG+S EH+VSL SA + +D R+DVV L I + G W D L Sbjct: 2 RTRVAVVGGGRSCEHDVSLASAAAVAAGLDPHRYDVVRLTIGRDGAWRDGDRPVGL---- 57 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 A + L DV+FP+ HG GEDG+L + + Sbjct: 58 ---------------------------AAAVEVLRRCDVVFPVAHGPHGEDGTLAALCEL 90 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A +P+VGS V A A MDK TK + T A R + + P+ Sbjct: 91 AGVPYVGSGVRAGALAMDKWATKLVAAAL-------GIATAAGRLVTAATATQETWTGPV 143 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNPQ 240 VKP GSS+GV+ V+ A+ A D + +VE+ + GREI+ AVL + Sbjct: 144 VVKPVAAGSSIGVAFVSEPASLPPALATALALDDRALVEELVTGREIDVAVLRRADGAVV 203 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS EIV + +D KY A VPA + + AV Y LGC+G+AR Sbjct: 204 ASPPLEIV-ADGLFDFDAKY--GGRADFRVPAVLDEVDAKALEGAAVATYDALGCSGVAR 260 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 VD FLT V+NE+NT+PG T S P+++ A+GL Y DL+ L+ Sbjct: 261 VDFFLTDTG-PVLNEVNTVPGMTEHSQVPRMFAAAGLPYPDLLDELV 306 >UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomycetales RepID=A0LWW5_ACIC1 Length = 333 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 95/355 (26%), Positives = 157/355 (44%), Gaps = 50/355 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V ++ GG S E EVSL SA+ +++A+ + Sbjct: 6 HVLVLAGGVSFEREVSLASARRVIEALRRLG----------------------------V 37 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + A+ L ++ D +F +HG+ GEDG+L+ +L +A Sbjct: 38 DVDLVDVDASVLDRLTADPP---------------DAVFIAMHGSEGEDGALRELLDLAG 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS----FAEVESKLGL 180 +P+VG+ + DK V K +L+ AG+ I ++ ++ +LGL Sbjct: 83 VPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFSQTAIRDLGGHQLLDRCVRRLGL 142 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-- 238 PL VKPA GS++GV+ V +A A+ F +D +VEQ + G E+ +V+ +D+ Sbjct: 143 PLVVKPARGGSALGVTIVREATAFAHALVTCFAYDTVALVEQYVVGTELAISVVEDDDGT 202 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P+A EI + Y +Y + VPA I D+ +A++A+Q LG + Sbjct: 203 PRALPPVEIRPVDGMFDYAARYT-AGMTEYHVPARITETARDRAVDVALRAHQALGLRDL 261 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +R DV +T ++EV+ E N PG T S+ P G+ L L+ A R Sbjct: 262 SRTDVIVTADDEVLYLETNVAPGMTPTSLLPMAAAEVGIDLGTLCRDLLVRAATR 316 >UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirillum sp. Group II RepID=A3ERR6_9BACT Length = 303 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 156/343 (45%), Gaps = 53/343 (15%) Query: 10 FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL 69 GG S E VS S K +++A+ ++ + + D H L Sbjct: 1 MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPV-----------------EAGPDLFHTLL 43 Query: 70 RPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVG 129 R S DV F HG GE+G+LQG L V +P+ G Sbjct: 44 RTSP--------------------------DVCFLATHGGHGENGALQGCLEVLGIPYTG 77 Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQ 189 S VL SA M K ++ L R GL++ + + R + LP VKP + Sbjct: 78 SGVLGSALGMSKSASRALFRQGGLDVPETVAIESGERLTPD----KIPFPLPFMVKPESA 133 Query: 190 GSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVL 249 GSS+GV++V A+ A + +++VE + GRE++ A+L + + EIV Sbjct: 134 GSSIGVTRVDHFPDLPQALLEAEKHSSRILVEPFLPGREVQSAIL---DGRYLGAIEIVP 190 Query: 250 TS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP 307 S FY Y +KY + ++ + PA + ++ ++ ++A+ L G+AR+D + P Sbjct: 191 DSSEPFYTYASKYQ-KGKSRHIFPAPLTSDVASRLEEATLRAFGLLELRGVARMDTLVLP 249 Query: 308 ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + VV+ E+NTLPG T S+ P++ + GL + DL+ ++ A Sbjct: 250 DGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSA 292 >UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia RepID=DDL_WOLTR Length = 339 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 91/367 (24%), Positives = 162/367 (44%), Gaps = 70/367 (19%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L + I+ GG S E ++SL S K + A+D ++ + + ++ + + Sbjct: 17 LTITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINP------- 69 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 D+ F +HG GEDG +QG+L + Sbjct: 70 ------------------------------------DLAFIALHGPYGEDGCIQGLLEIL 93 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + + S V+ASA M+K ++K + R G++ ++R + + K+ P Sbjct: 94 GIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRGDILKNNI-----KIDYPYV 148 Query: 184 VKPANQGSSVGVSKVTSEEQ---YAIAVDLAFEFD-------------HKVIVEQGIKGR 227 +KP N+GSS+GV S E + D +I+E+ I G Sbjct: 149 LKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGIEEEEPVWITRDLMIIEEYIPGI 208 Query: 228 EIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAV 287 E+ AVL ++ A+ EI + FY Y KY + A+ + PA I I + A+ Sbjct: 209 ELHTAVLLDE---AAGTMEIRPKNKFYDYKAKYTN-GFAEHIFPAEIPDNIYEMTLEHAL 264 Query: 288 QAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQAS-GLGYTDLITR 345 + ++ LGC ++R D P +N + + EINT PGFT +S+ P++ + + G+ + +L+ Sbjct: 265 KVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLVPEIAKLTKGIDFNELVKI 324 Query: 346 LIELALE 352 +IE +L+ Sbjct: 325 IIEDSLQ 331 >UniRef50_B0MM64 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM64_9FIRM Length = 354 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 182/350 (52%), Gaps = 6/350 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K R+ ++FGG SA+H SL +A +++ ++ K + + +GI + G+W S + Sbjct: 1 MAKKRIAVLFGGASADHAASLHTAYSVLSSLPKE-IEPLAIGITRAGRWLFYPGSYENIK 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + S + K ++I + + +D +FP++HG GEDG +QG+ Sbjct: 60 DGSWEQDSDCCSCVISPDMTNKGVIKII-SDGESTIHRIDAVFPVLHGKYGEDGRVQGLC 118 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA--EVESKL 178 ++A LP +G+D A+A C D+ + +L D+ + + +TL R+ ++++ A ++ KL Sbjct: 119 KLAGLPVIGNDFAAAALCNDRRIMDLVLSDSNIKVIENVTLHRSEMNDMTAAIKKITGKL 178 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-ND 237 P++ P + +SVG + +E++ A+ +F +I E +KGRE+ CAVLG Sbjct: 179 SFPIYTAPTSCSTSVGACRAENEKELEEAIKASFSHHPYIIAESAVKGRELTCAVLGAKH 238 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + + GE+V T D ++YI +++ VPA + +KI+ A AY L C Sbjct: 239 HDERVAIGELVRTDDSIDKLSEYI-ASTSELKVPAKLDGLTQNKIKQTARAAYDALSCKC 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 ARVD+ L + EV + + +PG S++ +L S Y +++ LI Sbjct: 298 FARVDMVLDNDGEVYVRRVRGIPGLDRQSIFTRLVTESTYSYEEMLRMLI 347 >UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomycetales RepID=D1BRV4_XYLCX Length = 349 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 99/357 (27%), Positives = 170/357 (47%), Gaps = 50/357 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 LRV ++ GG S E +VSL+S + + +A+ DV + +D Q ++ + Sbjct: 37 LRVVVLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQLLRYLDEHRP------- 89 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 DV++P++HG GEDGSL+ +L +A Sbjct: 90 ------------------------------------DVVWPLLHGAGGEDGSLRDVLELA 113 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF----AEVESKLG 179 +P+VG+ AS DK + K L+ AGL ++TL + ++ + V + G Sbjct: 114 GVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQELFRDLGAQGVLSIVAERFG 173 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDN 238 LP+ VKP GS++GV++VTS++ A A+ F + ++E+ + G EI +V+ G D Sbjct: 174 LPVVVKPTRGGSALGVTRVTSKDGLARAMVDCFAYGDSALIERAVDGVEIAVSVIDGMDG 233 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P A EI++ Y +D +Y + + PA ++P+ + +AV A+Q L + Sbjct: 234 PVALPAVEIIVDGP-YDFDARY-NPGRVEYFAPARLSPDQAAHVAGVAVAAHQALDLRHL 291 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +R D+ L + + E+N PG T S+ P+ A+G L +++E A R A Sbjct: 292 SRTDLILQTDGTAQVLEVNVAPGMTETSLLPQAAVAAGHDLGTLYRQVVEHAALRTA 348 >UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Streptomyces roseosporus NRRL 15998 RepID=UPI0001AECDB6 Length = 320 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 159/350 (45%), Gaps = 47/350 (13%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 VG+++GG S E SL S K DA+ F+ +L+ Sbjct: 11 VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLID----------------------- 47 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 + Q + + +DV +HG GEDG +QG+L + + Sbjct: 48 ---------------------TAEPQAIESIQKIDVALIALHGPGGEDGKIQGLLEILGV 86 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 P+ GS VLASA M K K+L+ GL+ +ITL + + VES +G P+F+K Sbjct: 87 PYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITLDPSLTSDEMSKVVESHVGWPVFIK 146 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH-KVIVEQGIKGREIECAVLG-NDNPQAST 243 P+ G S+G S +A + D+ + +VE+ + GR V+ + P+A Sbjct: 147 PSAGGGSLGAGIGRSPSDFAHMLADLNRQDYLEYLVEEYVPGRPCSVGVIETSGRPEALP 206 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 ++ +FY Y K+ + P+ + ++ ++++ AV+ + G G++RVD Sbjct: 207 VHDVETDREFYDYAAKHDPSKRIEN-CPSILPKDVTERLQEEAVRIHMLTGAHGVSRVDF 265 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + VI EINT+PG +++ + +A+G+ Y L+T +++ A R Sbjct: 266 IVDDNGRSVILEINTVPGLSDMGNLATMAKAAGMSYPALVTAVLKTAFNR 315 >UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31F0A Length = 309 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 155/349 (44%), Gaps = 52/349 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ + +GG+S E EVS +S + A+ + V L+ + Sbjct: 1 MKALVAYGGRSLEREVSARSGQQAAKALRQLGHAVELIDVGAD----------------- 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + D +F +HG GEDG++Q +L + Sbjct: 44 --------------------------FVDVVQRAEPDFVFIALHGVGGEDGTVQDLLEIL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL- 182 +P+ GSD LASA C+DK K + G+ P+ + T+ + + L Sbjct: 78 QVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQAFADYGAGKTLDALWQQFD 137 Query: 183 ---FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DN 238 VKPA QGSS G+S V Q AV A +D +V++E+ + GRE+ VLG D Sbjct: 138 GRAVVKPARQGSSFGLSVVQERAQLGGAVLGAMSYDDRVLLERYVPGRELAVTVLGRSDA 197 Query: 239 PQASTCGEIVLTS-DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+ EIV+ S ++Y++ Y E G V A + ++ +RAIA +AY GC Sbjct: 198 PEPLPVVEIVMASEEYYSFQAHY--EIGQSEVRLAGLPDAVDAHVRAIAAEAYSAAGCRD 255 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 ARVD+ L + E + EINT+PG T P + +GL + LI R+ Sbjct: 256 FARVDIRLEGD-EPWVLEINTIPGLTETGPTPLAAEHAGLTFAQLIERI 303 >UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GNT9_STRCL Length = 312 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 151/354 (42%), Gaps = 49/354 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV I+ GG S E + S SA A+ + + ++ I W Sbjct: 3 MRVAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFW-------------- 48 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + LP + F HG EDG LQG+L V Sbjct: 49 ------------------------------KRLPDFEAAFIAGHGWYAEDGKLQGLLEVM 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 LP+ GS VLAS+ M K K L+ G+ P+ ++R + V + +GLPLF Sbjct: 79 GLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRG-ATAAQISRVTAGIGLPLF 137 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEF-DHKVIVEQGIKGREIECAVLG-NDNPQA 241 KPA+ G S V S++ + E+ + I E + G VL + +A Sbjct: 138 AKPASNGESFEAGIVRSDKDLRELLAEEGEYSSDEFIAEPFLTGNTFTVGVLDIDGKIEA 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 E V +FY + K D + PA I + D+++ +AV+ + GC G+ARV Sbjct: 198 LPVLEAVSLREFYDSEAK-QDPSLHEYRCPAPIPDSLRDRMQELAVRVFTVCGCRGVARV 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D L+ + V+ E+NT+PG T + +ASGLGY ++ +++ A +R A Sbjct: 257 DFMLSED-RPVVLEVNTVPGLTLQGNLAAMAKASGLGYRRVVEIMLQSAFDRPA 309 >UniRef50_B8DLD4 D-alanine--D-alanine ligase n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLD4_DESVM Length = 408 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 110/394 (27%), Positives = 170/394 (43%), Gaps = 44/394 (11%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 K+RV + FGG+S EH+VS+ + ++ A+D ++++ V + +D+ G W + Sbjct: 4 GKIRVAVFFGGRSPEHDVSIVTGLQVIQALDAAQYEPVPVYVDRCGVWRTGEKLLDRATY 63 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT---VDVIFPIVHGTLGEDGSLQG 118 PA A A SL PGK + P DV P HG GEDG +QG Sbjct: 64 I-PARDADGLPAVSLEIAPGKGGMLVEQTSKLFGKPRRIPFDVAIPAFHGPYGEDGDMQG 122 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA----NRHNISFAEV 174 + +P+ G VLASA MDK TK+ L G+ + P L + Sbjct: 123 LFEAVGIPYTGMRVLASAIFMDKAATKQALAGTGIPMLPCAVLRKPVGGLLPPRADIEAA 182 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAV 233 + + LP +KPA+ GSS+GV+KV S E + F D IVE + G E +V Sbjct: 183 LAGITLPGCLKPAHLGSSIGVAKVDSIEDIEAVLPGLFRNDTVAIVEPYLDGCVEYNISV 242 Query: 234 LGNDNPQASTCGE-IVLTSDFYAYDTKYIDE-----------DGAK-------------- 267 + A++ E S+ + KY+ G K Sbjct: 243 RRDGEGHATSAIERPKRDSELLDFRQKYLSSGGKTGSKTGGMGGTKSAGDSGSAGMLSLT 302 Query: 268 VVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNIS 326 + + + +IR AV+ Y G G R+D +EV +NE+N +PG S Sbjct: 303 REINPDLPESLEGRIRDFAVRTYAAFGGTGAPRMDFMYDATRDEVWLNEVNPIPG----S 358 Query: 327 MYPKLWQAS--GLGYTDLITRLIEL--ALERHAA 356 LW+A+ + +T L++ +I+ A+ RH A Sbjct: 359 FAFFLWEAAESPIRFTRLLSLMIDEARAMARHTA 392 >UniRef50_Q6A5C1 D-alanine--D-alanine ligase B n=4 Tax=Propionibacterium acnes RepID=Q6A5C1_PROAC Length = 327 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 91/355 (25%), Positives = 150/355 (42%), Gaps = 49/355 (13%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 V ++ GG S + ++SL+S + + A+ + +VV ID A L A+D A Sbjct: 17 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADID--------SALIETLRANDGA 68 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 V+FP++HG LGE+G+L +L++ + Sbjct: 69 -----------------------------------VVFPMLHGGLGENGALLEVLQLMGI 93 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA----EVESKLGLP 181 P+VGS DK + R + AG+ + L + + K GLP Sbjct: 94 PYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRELGAQTVMRSIAEKFGLP 153 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQ 240 + VKPA GSS+GV+KV + AV A+ +D V+VE+ I G E+ ++ ++ + Sbjct: 154 VIVKPARGGSSLGVTKVDGVDDLPQAVANAYAYDDMVVVEEFIVGTELAIGMITTSEGTR 213 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI Y Y Y ++ PA I+ A+A + L +G++R Sbjct: 214 VLPAVEIRPVGGVYDYSAMYT-GGETRLTAPADISDTAAQTATAMARVVQKELDFSGISR 272 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 VD + V E PG T S+ P +A+GL ++ +RL++ H Sbjct: 273 VDAIVDESGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDDVARNHG 327 >UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriaceae RepID=D1AUY0_STRM9 Length = 299 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 167/351 (47%), Gaps = 54/351 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+G+++GG S E EVS+ + K I+ +DKS+++VV + I K+ +D Sbjct: 1 MRIGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISKK---------------ED 45 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + +D + +HG GE G +Q +L A Sbjct: 46 IFKVV---------------------------DLNLDFAYIALHGEFGESGDVQAILETA 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + + GS +L+SA CMDKD+TK L +++G+ I + + NI F+++ LG + Sbjct: 79 GIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKGE--NIKFSDL--NLGEKII 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD-HKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP GSS+GV T++E+ ++ F+ ++V++E+ G EI ++ + Sbjct: 135 LKPNRGGSSIGVYFATNDEELEYGLNEIFKLGENEVLIEEMKSGIEISVPIIAG---KVF 191 Query: 243 TCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I F+ Y +KY + + V + ++I ++AY + C G AR+ Sbjct: 192 PTLLIEPLKDTFFDYTSKYENGGAKEYV--YFFEESLQNEINDFTIKAYNAVKCKGFARI 249 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 D L +N+ E+NTLPG T S+ PK G Y++ + LI+ +++ Sbjct: 250 DYILV-DNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSETLDLLIKESIK 299 >UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma centrale str. Israel RepID=D1ASV0_ANACI Length = 336 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 158/350 (45%), Gaps = 54/350 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L + ++ GG S E EVSL K I DA+ + ++ ++++ + Sbjct: 13 LSIAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQL------------ 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 LA P D+++ +HG GEDG G+L + Sbjct: 61 ------------LAMAP-------------------DLVYNALHGGQGEDGCASGLLDIL 89 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 L + S V AS+ MDK +TK +L+ G++ F LT+ +S EV + P Sbjct: 90 GLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTK--EEVLSAKEV---MPYPFV 144 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GS++GV + S +Y A + +++VE+ I G+E+ AV +A Sbjct: 145 IKPICGGSTIGVHAIFSRSEYLDLSVHADALEGRMLVEEYIPGQEVHTAVF---LGRAIG 201 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 E + Y YD KY+ E + V PA ++ ++ AV+ YQ LGC ++RVD Sbjct: 202 TMEFLFEGRVYGYDAKYV-EGLCRHVFPANLSDDVYSLTMEWAVKLYQCLGCRTVSRVDF 260 Query: 304 FLTPENEVV-INEINTLPGFTNISMYPK-LWQASGLGYTDLITRLIELAL 351 N+ + + EINT PG T S P+ LW GL + ++ +++ AL Sbjct: 261 RYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIVKDAL 310 >UniRef50_Q8RDQ4 D-alanine--D-alanine ligase n=10 Tax=Fusobacterium RepID=DDL_FUSNN Length = 287 Score = 266 bits (681), Expect = 8e-70, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 154/350 (44%), Gaps = 64/350 (18%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+ + GG S+E E+SL+S + +++++ K +D + +D++ Q Sbjct: 1 MRIAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQ--------------- 45 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + D+ + ++HG GE+G +Q +L + Sbjct: 46 ---------------------------VSAFVDNDYDLAYLVLHGGNGENGKIQAVLDIL 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + GS VLASA MDKD TK++ + G+ S+ VE P+ Sbjct: 79 GKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPK------------SYRPVEEIERFPVI 126 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP ++GSS G+ ++E+ AV + I+E I G E+ VL N +A Sbjct: 127 IKPVDEGSSKGLFLCNNKEEAEEAVKKLAKP----IIEDYIIGEELTVGVL---NGEALG 179 Query: 244 CGEIVLTSDF-YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 +I+ +D Y YD+KY + G+ PA I + + IA + + G G++R D Sbjct: 180 VLKIIPQADVLYDYDSKY-AKGGSVHEFPAKIENKSYKEAMKIAEKIHSEFGMKGISRSD 238 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L E E+ E+N+ PG T S+ P L G + D++ +E LE Sbjct: 239 FIL-SEGELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVETFLE 287 >UniRef50_B9KHS3 D-alanine--D-alanine ligase n=5 Tax=Anaplasma marginale RepID=DDL_ANAMF Length = 334 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 163/350 (46%), Gaps = 54/350 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L V ++ GG S E EVSL K + DA+ + ++ +L ++++ Sbjct: 12 LSVAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRE----------------- 54 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 LA P D+++ +HG GEDG + G+L + Sbjct: 55 -------SVGQLLAMAP-------------------DLVYNALHGVQGEDGCVSGLLDIL 88 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 L S V AS+ MDK +TK +L+ G++ F LT+ +S EV L P Sbjct: 89 GLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEEL--LSAKEV---LPYPFV 143 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GS++GV + S+ +Y A + ++IVE+ + G+E++ AV +A Sbjct: 144 IKPVRGGSTIGVHAIFSKSEYLDLSAHADTLEDRMIVEEYVSGQEVQTAVF---LGRAIG 200 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 E++ Y+YD KY+ E + + PA + +I + A++ +Q LGC ++RVD Sbjct: 201 TMELLFEGRIYSYDAKYV-EGLCEHIFPANLPYDIYNLTLEWALKLHQCLGCKTLSRVDF 259 Query: 304 FLTPENEVV-INEINTLPGFTNISMYPK-LWQASGLGYTDLITRLIELAL 351 N+ + + EINT PG T S P+ LW GL + ++ +++ AL Sbjct: 260 RYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDAL 309 >UniRef50_Q6ME77 Putative D-alanine--D-alanine ligase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6ME77_PARUW Length = 798 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 80/359 (22%), Positives = 145/359 (40%), Gaps = 19/359 (5%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG S E +SL SA++++D + +++ + +D Q +++ + N Sbjct: 3 KIALICGGPSLERGISLNSARSVLDHLASEFIEIIPIYVDYQNFFYLISTAQLYSNTPAD 62 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 L+ SA ++ + K + L +D++FP++HG GEDG LQ +L + Sbjct: 63 FDFKLKKSAQAMNREEFK-----------KILRNIDLVFPVIHGIFGEDGELQKILEEID 111 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP-LF 183 +PFVG+ A A K ++L + + + L Sbjct: 112 VPFVGTGSQACAEMFCKYHASQILHQNRFPAFMKLEVCPETNDLAPIKSFFEQHQLKRAI 171 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD--HKVIVEQGIKGREIECAVLGNDN--P 239 VKP GSS+GV+ V + E + + + + ++E +G E VL N P Sbjct: 172 VKPTMGGSSIGVTSVQTPEDAFEKIKMLCQQGIAKRALIEPFCEGTEFTVVVLQNQQSKP 231 Query: 240 QASTCGEIVLT---SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A EI ++ + Y KY+ + PA I IR A + Sbjct: 232 VALIPTEIEMSYQNHQIFDYRKKYLPTNQTTYHTPARFDETIIQGIRQKAEAIFTLFHMR 291 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 AR+D +L + + ++N + G S + GL + D+ +I A R Sbjct: 292 DFARLDGWLLNDGTIYFTDLNPISGMEQNSFLFRQASLLGLTHRDVFRLIITSACLRWK 350 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 95/427 (22%), Positives = 152/427 (35%), Gaps = 75/427 (17%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNI-VDAIDKSRFDVVLLGIDK-QGQWHVSDASNYL 58 +EK +V ++FGGK+AE +VSL S N+ + + S++ + K W + A Sbjct: 362 LEKKKVHVLFGGKNAERQVSLMSGTNVWLKLLRSSKYHPIPFFYGKNDLIWQLPYAYTLD 421 Query: 59 LNADDPAH--IALRPSATSLAQVPGKHEHQLIDAQNGQPLPTV--------------DVI 102 ++ H +A S L QL N Q P+ + Sbjct: 422 HTVEEILHRCLAREASNKKLPNYFNSICEQLGIPYNFQETPSSMCLQDFYQLSASNQAFV 481 Query: 103 FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL---LRDAGLNIAPFI 159 F +HG GE+G LQ L L + GS S+ CMDK +T ++ L+ + P Sbjct: 482 FIAMHGGEGENGILQKELEKNQLYYNGSCAKTSSICMDKFLTGQVIEQLKHPNIFSLPKE 541 Query: 160 TLTRANRHNISFAEVESKL--------GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA 211 + AN S K L +KP G S G+ + S Sbjct: 542 CVEAANLFGQSTKYFLEKWNKICISLRSNRLIIKPRQDGCSAGIVLLESGADLEKYFAFI 601 Query: 212 -----------FEFDHKVI-----------VEQGIKGR------------------EIEC 231 F VI +E I+ E+ Sbjct: 602 QNNVSLIPKGSFSQQKDVIEMPSSTCVEYLLEPYIETDRIILDQGELIHEIKEGWVELTV 661 Query: 232 AVLGNDNPQASTCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAA--IAPEINDKIRAIAVQ 288 VL ++ S I L + + K+ G + P +A E +I+ + + Sbjct: 662 GVLEHNQIYRSLNPSITLAEGAVLSLEEKFQGGTGVNLTPPPEKILASEDVSQIKFLIEK 721 Query: 289 AYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPK--LWQASGLGYTDLITR 345 L AR+D+F E ++V+ E NTLPG T +++ + L + L L+ Sbjct: 722 TADALQIQNYARLDIFYHRETKKMVVIEANTLPGLTPSTVFYQQGLAEKKPLNPLSLLEI 781 Query: 346 LIELALE 352 +I LE Sbjct: 782 IISSKLE 788 >UniRef50_D0RN14 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=2 Tax=Bacteria RepID=D0RN14_9RICK Length = 305 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 97/356 (27%), Positives = 159/356 (44%), Gaps = 61/356 (17%) Query: 1 ME-KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M+ K ++ I+ GG+S E VS+ S K AI K ++V Sbjct: 1 MKNKKKILILMGGRSKERSVSIDSGKACYQAIKKIGYEVYKYD----------------- 43 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + + +N D++F +HG GEDG +Q + Sbjct: 44 --------------------------PIKNIKNNIKKINPDIVFNCLHGKYGEDGKIQKI 77 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +P+ S V AS MDK +K++ + F + + + ++ + Sbjct: 78 LEKLKIPYTHSGVKASEVAMDKIKSKKIFFKKKIITPNFKIIKKISDIKNKISKSK---- 133 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIV-----EQGIKGREIECAVL 234 +KP N+GSS+GV +Y + + E I+GREI+ AVL Sbjct: 134 --FILKPINEGSSLGVQI---FPEYPTSKNFKKIKKLIKKYKILIQEPYIEGREIQTAVL 188 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN +A EI+ +FY Y KY K ++P I +++KI+ IA+ A+++L Sbjct: 189 GN---KAIGSVEIIPKRNFYDYKAKYSLSAKTKHIIPPKIPKRLDNKIKRIALIAHKSLK 245 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 C G+ R D + P N++ I EINT PG TN+S+ P++ Q GL +T+L+ +I+ A Sbjct: 246 CRGVTRSDFRVMPNNKIYILEINTQPGMTNLSLVPEIAQNFGLSFTELVDWMIKDA 301 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia ... 429 e-119 UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria Re... 421 e-116 UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria R... 421 e-116 UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=... 420 e-116 UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia R... 415 e-114 UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia R... 413 e-114 UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobact... 409 e-113 UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio... 407 e-112 UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizo... 404 e-111 UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular or... 403 e-111 UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria Rep... 401 e-110 UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria Rep... 397 e-109 UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi ... 394 e-108 UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillu... 394 e-108 UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepI... 394 e-108 UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermoth... 394 e-108 UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales ... 392 e-107 UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonel... 388 e-106 UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum... 387 e-106 UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces ... 384 e-105 UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=... 384 e-105 UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerof... 384 e-105 UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema Re... 383 e-105 UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bron... 382 e-105 UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli Re... 381 e-104 UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycet... 381 e-104 UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria Rep... 380 e-104 UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerot... 380 e-104 UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine syn... 379 e-104 UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizob... 379 e-104 UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecali... 379 e-103 UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteob... 378 e-103 UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacill... 378 e-103 UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci R... 377 e-103 UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycet... 377 e-103 UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 375 e-102 UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachl... 375 e-102 UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID... 374 e-102 UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN 373 e-102 UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacter... 372 e-102 UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus S... 371 e-101 UniRef50_A9N8L3 D-alanine--D-alanine ligase n=6 Tax=Coxiella bur... 370 e-101 UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcale... 370 e-101 UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetal... 370 e-101 UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevib... 369 e-101 UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas... 369 e-101 UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora ... 369 e-100 UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus... 368 e-100 UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiale... 367 e-100 UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiace... 366 e-100 UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella R... 366 e-100 UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aerom... 366 1e-99 UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdema... 363 5e-99 UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria Re... 362 1e-98 UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospor... 361 2e-98 UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobiu... 361 3e-98 UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria Rep... 359 1e-97 UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacill... 358 2e-97 UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla ... 357 3e-97 UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 357 4e-97 UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pa... 356 9e-97 UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C... 356 9e-97 UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium ... 355 2e-96 UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cell... 355 2e-96 UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacill... 355 2e-96 UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4... 354 3e-96 UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes R... 354 3e-96 UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidami... 353 5e-96 UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiace... 353 5e-96 UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae Re... 353 6e-96 UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacte... 353 7e-96 UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus... 352 8e-96 UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein... 352 9e-96 UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacil... 351 2e-95 UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 351 3e-95 UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria Re... 351 3e-95 UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranu... 349 8e-95 UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 T... 349 9e-95 UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2... 349 1e-94 UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bactero... 348 2e-94 UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium c... 348 2e-94 UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaprot... 348 2e-94 UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteob... 348 2e-94 UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria Re... 348 2e-94 UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocyst... 347 3e-94 UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacte... 346 8e-94 UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteri... 346 8e-94 UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostri... 345 1e-93 UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacte... 345 1e-93 UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacill... 345 2e-93 UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaero... 345 2e-93 UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria ... 343 5e-93 UniRef50_B0MP08 Putative uncharacterized protein n=1 Tax=Eubacte... 343 7e-93 UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes R... 343 8e-93 UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified E... 342 9e-93 UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine s... 342 1e-92 UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax... 342 1e-92 UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromon... 342 2e-92 UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacter... 342 2e-92 UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacter... 342 2e-92 UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes Re... 340 6e-92 UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostoc... 339 9e-92 UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacte... 339 1e-91 UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clost... 338 2e-91 UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter s... 337 3e-91 UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bactero... 337 3e-91 UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 337 5e-91 UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobaci... 337 5e-91 UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria Re... 337 6e-91 UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworth... 336 6e-91 UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacte... 336 7e-91 UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira b... 336 9e-91 UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 335 2e-90 UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root Re... 334 3e-90 UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella ... 334 4e-90 UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomona... 334 4e-90 UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 333 6e-90 UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 333 7e-90 UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales R... 332 1e-89 UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilu... 330 4e-89 UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteob... 330 5e-89 UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteri... 330 5e-89 UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivib... 329 9e-89 UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales ... 329 1e-88 UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococ... 329 1e-88 UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia Re... 328 2e-88 UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 328 2e-88 UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium Rep... 327 3e-88 UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 327 3e-88 UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimo... 327 4e-88 UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteo... 327 5e-88 UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus ... 327 5e-88 UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=... 327 5e-88 UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas ... 326 7e-88 UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacte... 326 1e-87 UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales... 325 1e-87 UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ell... 325 1e-87 UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Rumin... 325 1e-87 UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus... 324 4e-87 UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteob... 323 8e-87 UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacil... 322 9e-87 UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteri... 322 1e-86 UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothr... 321 2e-86 UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia m... 321 3e-86 UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistip... 321 3e-86 UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidip... 321 3e-86 UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira R... 320 3e-86 UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetell... 320 4e-86 UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine syn... 319 8e-86 UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n... 319 1e-85 UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermac... 318 2e-85 UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacter... 318 2e-85 UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular or... 318 2e-85 UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteob... 316 7e-85 UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular o... 316 7e-85 UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coproco... 316 8e-85 UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium oc... 316 8e-85 UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteob... 314 3e-84 UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacte... 313 6e-84 UniRef50_D2MND8 D-ala D-ala ligase N-terminal domain protein n=2... 313 8e-84 UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidete... 312 1e-83 UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacill... 312 2e-83 UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Ta... 312 2e-83 UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomona... 311 2e-83 UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Te... 311 3e-83 UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogace... 310 3e-83 UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter ... 310 3e-83 UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae... 310 5e-83 UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium... 310 5e-83 UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces... 310 5e-83 UniRef50_Q821S4 D-alanine--D-alanine ligase n=15 Tax=Chlamydiace... 308 2e-82 UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibri... 308 2e-82 UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacte... 308 2e-82 UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacter... 307 4e-82 UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia ... 307 4e-82 UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrob... 307 5e-82 UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcu... 307 5e-82 UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrob... 307 6e-82 UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteria... 305 2e-81 UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacter... 305 2e-81 UniRef50_A6CDT2 D-alanine--D-alanine ligase n=1 Tax=Planctomyces... 304 3e-81 UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9... 304 3e-81 UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabact... 304 4e-81 UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella... 304 4e-81 UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga ole... 304 4e-81 UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 303 5e-81 UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aph... 302 9e-81 UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibr... 302 1e-80 UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collins... 302 2e-80 UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera ... 302 2e-80 UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methyl... 300 4e-80 UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified... 300 4e-80 UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas... 300 5e-80 UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aph... 300 7e-80 UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=D... 299 8e-80 UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collins... 299 1e-79 UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobact... 299 1e-79 UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis v... 298 2e-79 UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis... 298 2e-79 UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma w... 298 3e-79 UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 298 3e-79 UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermob... 297 4e-79 UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfov... 297 5e-79 UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteo... 297 6e-79 UniRef50_Q60GK8 D-alanyl-D-alanine ligase n=2 Tax=Streptomyces R... 296 7e-79 UniRef50_C0BG03 D-alanine--D-alanine ligase n=1 Tax=Flavobacteri... 296 7e-79 UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovi... 295 2e-78 UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteo... 294 3e-78 UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsiea... 294 4e-78 UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus P... 292 1e-77 UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteo... 291 2e-77 UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriac... 291 3e-77 UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister in... 291 3e-77 UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostri... 290 6e-77 UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q87... 289 9e-77 UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteob... 289 1e-76 UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundu... 289 1e-76 UniRef50_UPI0001AF4ABE D-alanine--D-alanine ligase n=1 Tax=Salmo... 289 1e-76 UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine s... 289 1e-76 UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=... 288 2e-76 UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira ... 288 2e-76 UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 287 3e-76 UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella... 287 4e-76 UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatron... 287 6e-76 UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp... 286 7e-76 UniRef50_C3WFS8 D-alanine-D-alanine ligase n=6 Tax=Fusobacterium... 285 2e-75 UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae... 283 4e-75 UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=... 283 8e-75 UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirill... 279 1e-73 UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirill... 278 2e-73 UniRef50_C0VTV5 D-alanyl-alanine synthetase A n=2 Tax=Corynebact... 277 6e-73 UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomyceta... 277 6e-73 UniRef50_A4Y6E2 D-alanine--D-alanine ligase n=18 Tax=Shewanella ... 276 9e-73 UniRef50_B8DLD4 D-alanine--D-alanine ligase n=1 Tax=Desulfovibri... 275 2e-72 UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT 273 7e-72 UniRef50_A1SMF1 D-alanine--D-alanine ligase n=1 Tax=Nocardioides... 273 7e-72 UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicro... 272 1e-71 UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces ... 272 1e-71 UniRef50_Q6A5C1 D-alanine--D-alanine ligase B n=4 Tax=Propioniba... 272 1e-71 UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia Re... 272 2e-71 UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexi... 269 9e-71 UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomyceta... 269 9e-71 UniRef50_Q96RQ3 Methylcrotonoyl-CoA carboxylase subunit alpha, m... 269 1e-70 UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Strep... 269 1e-70 UniRef50_Q6ME77 Putative D-alanine--D-alanine ligase n=1 Tax=Can... 267 3e-70 UniRef50_B0MM64 Putative uncharacterized protein n=1 Tax=Eubacte... 267 4e-70 UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriac... 267 5e-70 UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma ce... 266 8e-70 UniRef50_A9KRE2 D-alanine--D-alanine ligase domain protein n=1 T... 265 2e-69 UniRef50_Q8RDQ4 D-alanine--D-alanine ligase n=10 Tax=Fusobacteri... 262 1e-68 Sequences not found previously or not previously below threshold: >UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia RepID=DDL_THEP3 Length = 359 Score = 429 bits (1104), Expect = e-119, Method: Composition-based stats. Identities = 145/359 (40%), Positives = 232/359 (64%), Gaps = 6/359 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEK ++ ++FGG+S EHEVSL SAK+I++ +DK ++++ ++GI K+G+W++ + Sbjct: 1 MEKKKIAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + ++ K+ + +DV+FP++HG GEDG++QG+L Sbjct: 61 TGEWEK----EGIPAIMGASTKYRGIITFEDGENGFYPIDVVFPVLHGPNGEDGTIQGLL 116 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN-ISFAEVESKLG 179 + ++P+VG++VL+SA CMDK TKR+ ++AGL F+ + + + + LG Sbjct: 117 ELLDMPYVGANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIEDLEAIKKKIEHLG 176 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P FVKPAN GSSVG++KV +EE+ A+ LA ++D K+++E+GI REIEC+VLGN+NP Sbjct: 177 YPCFVKPANLGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENP 236 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GEIV +++FY Y+ KY D + +++PA + E +++R +A++AY+ L GMA Sbjct: 237 EASIAGEIVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMA 296 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 RVD + + +NE+NT+PGFT ISMYPKLW++SG Y+ L+ LI LA+E H Sbjct: 297 RVDFLMDRNTGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLLDELINLAVESHNEK 355 >UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria RepID=DDL_CLOTH Length = 376 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 156/366 (42%), Positives = 230/366 (62%), Gaps = 14/366 (3%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K RV ++FGG+S+EHEVS SA +I+ I+ +FDV ++GI K G+W D + + Sbjct: 3 DKKRVLVIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPS 62 Query: 62 DDPAHIALRPSATSLAQVPG---------KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGE 112 + IAL+ S+A + L A + +DV+FP++HG GE Sbjct: 63 GEWEEIALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGE 122 Query: 113 DGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NI 169 DG++QG+ +A +P+VG VLASA MDK K + AG+ A ++ TR + Sbjct: 123 DGTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEG 182 Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 ++E K P+FVKP+N GSSVGVSK + + A+ A +D KV++E+ I GRE+ Sbjct: 183 VVDKIEEKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAARYDRKVLIEEFINGREV 242 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 ECAVLGND+P AST GEI+ ++FY Y KYI E+ +K+ +PA + E ++IR AV+A Sbjct: 243 ECAVLGNDDPVASTVGEIIPGNEFYDYKAKYI-ENTSKIKIPADLPEETVEQIRNYAVKA 301 Query: 290 YQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 ++ L C+G+ARVD F+ E +V INEINT+PGFT+ISMYP LW+ SG+ Y +LI +LI+ Sbjct: 302 FKALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLID 361 Query: 349 LALERH 354 LA++R+ Sbjct: 362 LAVQRY 367 >UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria RepID=DDL_BAUCH Length = 375 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 225/359 (62%), Positives = 282/359 (78%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVGI+FGG+SAEHEVSLQSAKNIV+ ID+++F+VVL GIDK+GQWH+++ NYL+ Sbjct: 1 MAKLRVGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIY 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ +IAL S +A +PG+ Q I + L +DVIFPIVHGTLGEDG+LQG+L Sbjct: 61 GENETYIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGEDGNLQGLL 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 R+ANLPFVGS VL SA MDKD+ KRLLRDA L + P ITLTR NR N S+ ++ + LG Sbjct: 121 RMANLPFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRENFSYDQIITYLGS 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 LFVKPANQGSSVGVSKV + + A+ LAF FD KV+VE I GRE+ECAVLGN +PQ Sbjct: 181 SLFVKPANQGSSVGVSKVINRISFDQALALAFCFDDKVLVESAINGRELECAVLGNHDPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS CGEIVL+ +FY+Y+ KY++E GA VVVPAAI+ E+++ I+ IAV+A+Q L C GMAR Sbjct: 241 ASLCGEIVLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 VDVFLT N+V++NE+NT PGFT+ISMYPKLWQASG+ Y LITRLIELA+ER+ A+ Sbjct: 301 VDVFLTTNNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIELAIERYYAEQK 359 >UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=DDL_CLOCE Length = 376 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 171/373 (45%), Positives = 234/373 (62%), Gaps = 10/373 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K RV I+FGG+S+EHEVS SA+++++ IDK ++DV ++GI K GQW D + Sbjct: 1 MSKKRVAIIFGGQSSEHEVSRVSAQSVIENIDKQKYDVEIIGITKSGQWLKYDGPVEKIG 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHE-----HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGS 115 D IA + SL+Q + + G +DVIFP++HG GEDG+ Sbjct: 61 NGDWEAIAQKKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGT 120 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFA 172 +QG+ +A +P+VG VL SA MDK TK + GL ++ R NR A Sbjct: 121 IQGLFELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVA 180 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 ++E +L P FVKP+N GSSVGV+K + E A+++A + D +++VE+ I GREIECA Sbjct: 181 QIEGRLTYPCFVKPSNAGSSVGVNKASDRESLVKALNIAAKNDRRILVEEFINGREIECA 240 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAA-IAPEINDKIRAIAVQAYQ 291 VLGNDNP AST GE+V +DFY Y+ KY D +KVV+PA ++ E +KIR AV+A++ Sbjct: 241 VLGNDNPVASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSKETVEKIREYAVRAFK 300 Query: 292 TLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L CAG++RVD F+ E E+ INEINTLPGFT ISMYPKLW ASG+ Y++LI +LIELA Sbjct: 301 CLDCAGLSRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAASGIPYSELINKLIELA 360 Query: 351 LERHAADNALKTT 363 ER+ T Sbjct: 361 FERYEDTRREYTN 373 >UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia RepID=DDL_NATTJ Length = 365 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 156/368 (42%), Positives = 234/368 (63%), Gaps = 10/368 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+KLRVG++FGG+S EHEVSL+SA +I++A+D+ F+V+ +GI K G+W +A L Sbjct: 1 MKKLRVGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAPLEELE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +++ +P + L + + +D+IFP++HGT GEDG++QG L Sbjct: 61 TG-----IKNQGNYAVSILPDPSKKVLWKLDPFEKISEIDLIFPVLHGTFGEDGTVQGFL 115 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESK 177 + +P+VGS VL S+ MDK + K++LR GL +A + + R+ + +E + Sbjct: 116 DLCGIPYVGSGVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFSIEKQ 175 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SKV + E+ +DLA ++D K + E+ I G+EIE ++LGND Sbjct: 176 LSYPIFVKPANLGSSVGISKVKNREELIQGIDLAVKYDMKCLAEEFIPGKEIELSILGND 235 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 NP+ S GEI+ ++FY Y+ KYI + +K+V+PA ++ + KI + V+A++ L C G Sbjct: 236 NPKTSVPGEIIPANEFYDYNAKYI-NNKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCYG 294 Query: 298 MARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 ++RVD F+ + EV INEINT+PGFT ISMYPKLW SGL Y+ L+T LI LAL R Sbjct: 295 LSRVDYFVLEDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLLTDLIYLALARQQE 354 Query: 357 DNALKTTM 364 + T Sbjct: 355 KDRNSTDF 362 >UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia RepID=DDL_CALS8 Length = 364 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 141/367 (38%), Positives = 229/367 (62%), Gaps = 10/367 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL+V ++FGG S EHEVS+ SAK+++ +DK +++++ +GI K+G+W + L+ Sbjct: 1 MTKLKVAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLD 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + S + + + +DV+FP++HG GEDG++QG+L Sbjct: 61 SKWTMY-----SIECFISPDRTKKALVKIKDSEATFIDIDVVFPVLHGLNGEDGTVQGLL 115 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESK 177 ++ +P+VG VL+SA CMDK K+L G+ F+ + + +ES+ Sbjct: 116 ELSGIPYVGCGVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIESE 175 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 P+FVKPAN GSSVG+SK +++ +A+ AF +D K+++EQ I REIECAVLGN Sbjct: 176 FSYPVFVKPANSGSSVGISKAKDKDELILAIHEAFLYDTKILIEQAINAREIECAVLGNS 235 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEIV + +FY+Y+ KYID +++++PA + ++ D+I+ +AV+ Y+ C+G Sbjct: 236 EILVSALGEIVPSREFYSYEAKYID-GSSELIIPAKLEKQVEDEIKELAVKIYKLFECSG 294 Query: 298 MARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 MAR+D F+ E N+V NE+NT+PGFT+ISMYPKL + SG+ Y L+ +LI+LA+E++ Sbjct: 295 MARIDFFVDKETNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLAIEKNQQ 354 Query: 357 DNALKTT 363 ++K + Sbjct: 355 KQSIKYS 361 >UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobacterium hafniense RepID=B8FWD5_DESHD Length = 361 Score = 409 bits (1052), Expect = e-113, Method: Composition-based stats. Identities = 162/366 (44%), Positives = 227/366 (62%), Gaps = 9/366 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M + ++ I+FGG+S EHEVSL SA +++ AID+ ++++ +GI K GQWH Sbjct: 1 MTRQKIIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQ 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 AL LA P +D + +IFP++HG GEDG++QG+ Sbjct: 61 DP-----ALEGIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLF 115 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESK 177 +AN+P+ GS VL SA MDKD K + +AGL AP+IT+ R +E Sbjct: 116 EMANIPYAGSGVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHS 175 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 LG P FVKPAN GSSVG+SK + E+ A+ LA E+D K++VEQ I GREIE +VLGN+ Sbjct: 176 LGYPCFVKPANLGSSVGISKARNREELIQALQLAAEYDRKLVVEQNIVGREIELSVLGNE 235 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + QAS GEI+ DFY Y+ KYID +++V+PA +APE+ ++ AV A++ + G Sbjct: 236 DAQASIPGEILPAKDFYDYEAKYIDTG-SQLVIPAPLAPEVVRSLQEKAVAAFKAVEACG 294 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 ++RVD F+T ++ INEINT+PGFT ISMYPKLW+ASG+ YT+LITRLIEL +R Sbjct: 295 LSRVDFFVTEGGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIELGFQRFRDS 354 Query: 358 NALKTT 363 + K + Sbjct: 355 RSRKIS 360 >UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio bacteriovorus RepID=DDL_BDEBA Length = 365 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 167/365 (45%), Positives = 246/365 (67%), Gaps = 5/365 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K+ V ++FGGKSAEHEVSL+SAKN+ DA+DK +F VL+GI K+G W+ Sbjct: 3 MKKI-VALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTE 61 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 A AL A +A + + + L VDV FPI+HGT+GEDG++QG+ Sbjct: 62 ATKIVDSALPSKAEPVALMSLQGKPVLYSL-KDHSKTAVDVAFPILHGTMGEDGTIQGLF 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ LPFVG V +SAA MDK++ KRLL A + A ++ LT +++ + E+ +LG Sbjct: 121 KMVQLPFVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKND--YNEIVKELGS 178 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-P 239 P F+KPAN GSSVGV K+ + E + + + AF+FD KV+ E+ I+GRE+EC+V+G+++ P Sbjct: 179 PFFIKPANAGSSVGVHKIKTAEDFVVKLKDAFQFDTKVLAEEFIQGREVECSVMGHNHAP 238 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GE++ +FY+Y+ KYID++GA + +PA ++PE ++ +A Q YQ +GC G+ Sbjct: 239 KASLPGEVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTYQAMGCDGLT 298 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 RVD F+ P E+ INEINT+PGFT ISMYPK+W+ASGL Y DLI++LI+L E+ + + Sbjct: 299 RVDFFIRPNGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQLGFEKFEGEQS 358 Query: 360 LKTTM 364 LKT+ Sbjct: 359 LKTSY 363 >UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizobium japonicum RepID=DDLA_BRAJA Length = 373 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 157/365 (43%), Positives = 230/365 (63%), Gaps = 6/365 (1%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K+RV +++GG+S EHEVSL+SA ++ +D++RF+V+ + IDK G+W +D + Sbjct: 3 DKIRVVVLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQAH 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 I LA+ P + Q +DV+FP++HG L EDG++QG+L Sbjct: 63 AAALPILPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGLLE 122 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKL 178 +A++ +VGS VLASA MDKDV KRL AG+ +AP+ LTR S A+ L Sbjct: 123 LADVAYVGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLAKAVEGL 182 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 LP+FVKP N GSSVG+ KV +++ A+D AF +D KV+V+QGI REIE AVL ++ Sbjct: 183 SLPVFVKPCNMGSSVGIHKVKTQDALEAALDDAFRYDVKVLVQQGIDAREIEVAVLEDET 242 Query: 239 PQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 AS E+ +FY+Y+ KY+D DGA+V +PA + +++R++A + + L C+ Sbjct: 243 LFASLASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVFAALECS 302 Query: 297 GMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G ARVD FL E NEINTLPGFT+ISMYPK+ +ASG+ Y +L++RL++LAL+RH Sbjct: 303 GFARVDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVDLALDRHR 362 Query: 356 ADNAL 360 +L Sbjct: 363 QRQSL 367 >UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular organisms RepID=DDL_ANAVT Length = 367 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 163/365 (44%), Positives = 228/365 (62%), Gaps = 13/365 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASN 56 M KLRVG++FGG+S EHEVS+ SA+ I A+ + S+++++ I K G+W +A Sbjct: 1 MSKLRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQ 60 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 +L + P + S+ + + + L Q+ + VDV FPI+HG GEDG++ Sbjct: 61 QVLKSGAPL-LESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTI 119 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF----- 171 QG+L + PFVGS VL SA MDK K AGL + +TRA + Sbjct: 120 QGLLTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKL 179 Query: 172 -AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 E+E+ LG P FVKPAN GSSVG+SKV S ++ A+D A +D ++IVE G+ RE+E Sbjct: 180 CDEIEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIVEAGVVAREVE 239 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 CAVLGND PQAST GEI SDFY Y+TKY A +++PA I EI+ +I+ +A+QA+ Sbjct: 240 CAVLGNDQPQASTVGEITFNSDFYDYETKYT-AGKADLLIPAVIPDEISRQIQDMALQAF 298 Query: 291 QTLGCAGMARVDVF-LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + AG+ARVD F + EV+INEINTLPGFT SMYP+LW SG+ + +L+ +L++L Sbjct: 299 AAVDAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLVQL 358 Query: 350 ALERH 354 A+ERH Sbjct: 359 AIERH 363 >UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria RepID=C1F9Q0_ACIC5 Length = 400 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 170/401 (42%), Positives = 240/401 (59%), Gaps = 38/401 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+KLR+GI+FGG+S EHEVSL SA +I+ AID+ +++VV +GI KQG+W +DA+ LL Sbjct: 1 MKKLRIGILFGGRSGEHEVSLLSAASILKAIDRKKYEVVPIGITKQGRWVTADAAELLLA 60 Query: 61 ADDP-----------------AHIALRPSATSLAQVPGKHEHQLI----------DAQNG 93 A + + A + VP + + A + Sbjct: 61 NGSAKAEPRPLRAGDPDTTPGAAVLAKGEAVIVPPVPQQASQGALVPFETQASTLTADSA 120 Query: 94 QPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL 153 + +D+IFP++HGT GEDG++QG+L +A + +VGS VL SA MDKD+ KRL A L Sbjct: 121 RQALQLDIIFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAKL 180 Query: 154 NIAPFITLTRANRHNISFA---EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL 210 I +T R ++E+ L P+FVKPAN GSSVG+SK ++ A++L Sbjct: 181 PITKHVTFLRPEWEKNPRKITTQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAIEL 240 Query: 211 AFEFDHKVIVEQGIKG-----REIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDG 265 A FD K++VEQG+ G RE+E AVLGN+ P+AS GEIV +FY Y+ KY+ E Sbjct: 241 AAGFDRKIVVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSEGS 300 Query: 266 AKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP--ENEVVINEINTLPGFT 323 ++PA + + +IR +AV A++ CAG+ARVD + P + +NEINTLPGFT Sbjct: 301 VP-IIPAKLTKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPGFT 359 Query: 324 NISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTTM 364 +ISMYPKLW+ASGL Y+ LI RLIELA ER A + + ++ Sbjct: 360 SISMYPKLWEASGLPYSKLIDRLIELARERRAEQDRNRYSL 400 >UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria RepID=DDL_HELMI Length = 366 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 158/367 (43%), Positives = 221/367 (60%), Gaps = 12/367 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + ++ GG+S EHEVSL SA++IVDA+D+ RF+V+ +GID+ G W + N Sbjct: 1 MMKQTIAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGS------N 54 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP-TVDVIFPIVHGTLGEDGSLQGM 119 D +P + +P LI+ P VDV FP++HG GEDG++QG+ Sbjct: 55 VIDNLRKGQQPYGQRVYFIPDPTCPGLIEENPVTRKPVPVDVFFPVLHGPNGEDGTIQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVES 176 AN+P+VG VLASA MDK + K L + L P++ + R EVE Sbjct: 115 FEAANVPYVGCGVLASACGMDKAIMKALFAQSDLPQLPYLVVLRNRWESAREQVIDEVED 174 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 +LG P FVKPAN GSSVG+SK T+ + A D A +D K+IVE+GI REIE +VLGN Sbjct: 175 RLGYPCFVKPANMGSSVGISKATNRAELVAAFDDAVRYDRKLIVEKGINVREIEVSVLGN 234 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D AS GEIV +FY YD KY D +++++PA IA + +A++A++ + + Sbjct: 235 DEVVASVPGEIVPAHEFYDYDAKYAAAD-SRLLIPAPIAAADVATFQEMAIRAFRAIDGS 293 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G++RVD L EV INEINTLPGFT+ISMYPKLW+A+G+ Y +L++RL++L L R+ Sbjct: 294 GLSRVDFLLDKNSGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVDLGLARYR 353 Query: 356 ADNALKT 362 T Sbjct: 354 EKQRNAT 360 >UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi (class) RepID=DDL_HERA2 Length = 361 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 152/362 (41%), Positives = 225/362 (62%), Gaps = 8/362 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWH-VSDASNYLL 59 M K RVGIVFGGKS EHEVSL+SA+ +++A+D ++ V+ +GI + GQW D L Sbjct: 1 MTKRRVGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRNGQWLSGGDPLLALE 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D + P A +++ + Q + +DVI P++HG GEDG++QG+ Sbjct: 61 QQADQKMLGRTPQAGVVSETAIVQSAGSLPEQTN--VAALDVIIPVLHGPFGEDGTIQGV 118 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVES 176 ANLP+VG VLA++ MDK + K AGL P+ + R + + +E+ Sbjct: 119 FEFANLPYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEAVYERLEA 178 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L P+FVKPAN GSSVG+SKV++ + A + A +D +++VEQGI REIE A+LGN Sbjct: 179 TLHYPMFVKPANLGSSVGISKVSNRAELATGMAEAAGYDRRIVVEQGINAREIEVAILGN 238 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D+P+ S GE++ +DFY Y KY+ E + +PA + ++++R +AV A++ + A Sbjct: 239 DDPKPSVPGEVLPANDFYDYADKYL-EGQTQFAIPAELDAATSEQLREMAVTAFKAIDGA 297 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G+ARVD F+ E + INEINT PGFT +S YPKLW+A+GLGY++L+ RLI+LA+ER+ Sbjct: 298 GLARVDFFVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELLDRLIDLAIERYH 357 Query: 356 AD 357 Sbjct: 358 ER 359 >UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB62_BREBN Length = 375 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 141/362 (38%), Positives = 223/362 (61%), Gaps = 7/362 (1%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K+R+GI++GGKS+EHEVSL++A +I+ A+D ++++V + + G W + L Sbjct: 4 QKIRLGIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGETLAGQLPD 63 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNG--QPLPTVDVIFPIVHGTLGEDGSLQGM 119 A + S E + +DV+FP+VHG GEDG++QG+ Sbjct: 64 KIEALRLSAKTPVSNEATETGQELAVTSKSGSLFAMNEQMDVVFPVVHGPFGEDGTIQGL 123 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVES 176 L +AN+P+VG+ V+ASA MDK + K + AGL ++ L R+ + +E Sbjct: 124 LELANIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDDVMDRIER 183 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 +LG P FVKPAN GSSVG++K + E+ A+D+A +FD ++IVE+ ++ RE+E VLGN Sbjct: 184 ELGYPCFVKPANMGSSVGINKAKNREELKHALDVAAKFDRRLIVEEFVQVRELEIGVLGN 243 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 + S GE++ +FY Y+ KY G ++ +PA + ++++I IA QA+Q L + Sbjct: 244 EELMTSVVGEVIAAKEFYDYEAKY-KGAGTELSIPAIVPEHVSEQIAEIAKQAFQALDGS 302 Query: 297 GMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G++RVD F +++ INE+NT+PGFT SMYP L+QA+G+GY++LI RL++LA+ERHA Sbjct: 303 GLSRVDFFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVGYSELIDRLVQLAIERHA 362 Query: 356 AD 357 Sbjct: 363 DK 364 >UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepID=B9YQN3_ANAAZ Length = 394 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 152/365 (41%), Positives = 215/365 (58%), Gaps = 27/365 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS----RFDVVLLGIDKQGQWHVSDASN 56 M KLRVG++FGG+S EHEVS+ SA+ I +A+ +++++ I K G W + + Sbjct: 44 MSKLRVGLLFGGRSGEHEVSIISARGIANALSAEENSHKYEIMPFYIQKDGFWQAGEVAQ 103 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 +L + PG + Q +D+ FPI+HG GEDG++ Sbjct: 104 QVLTSGVAKEH------------PGNRANL---WQFPPQTAEIDLWFPILHGPNGEDGTI 148 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF----- 171 Q +L + +PFVGS VL SA MDK K AGL + LTRA + Sbjct: 149 QALLTLMQVPFVGSGVLGSATGMDKIAMKTAFAQAGLPQVKYKALTRAQIWSNPCVFPKL 208 Query: 172 -AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 E+E+ LG P FVKPAN GSSVG++KV S ++ A+D A +D ++IVE G+ RE+E Sbjct: 209 CDEIEATLGYPYFVKPANLGSSVGIAKVQSRQELEAALDNAATYDRRIIVEAGVVAREVE 268 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 CAVLGNDNP+AS GEI SDFY Y+TKY + A + +PA + +I+ A+QA+ Sbjct: 269 CAVLGNDNPKASVIGEITFDSDFYDYETKYT-QGKADLFIPAHLPESAVQQIQEKALQAF 327 Query: 291 QTLGCAGMARVDVF-LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + AG+ARVD F + E++INEINTLPGFT+ SMYP+LW +G+ + L+ +LI+L Sbjct: 328 TAVDAAGLARVDFFYVEATGEILINEINTLPGFTSTSMYPQLWANTGISFPKLVDQLIQL 387 Query: 350 ALERH 354 A+ERH Sbjct: 388 AMERH 392 >UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermothrix orenii H 168 RepID=DDL_HALOH Length = 343 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 148/357 (41%), Positives = 222/357 (62%), Gaps = 17/357 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLR+G++FGG+S EHEVS+ SA+++V K ++ V+ GI K+GQW + S +LN Sbjct: 1 MSKLRLGVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + +V + + ++ +D++FP++HG GEDG LQG L Sbjct: 61 NG-------------INEVKASKDRCITESVRVFLDHKLDIVFPVLHGPYGEDGKLQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESK 177 ++P++G+ VL+SAA MDK++ K L + A + + N + +E++ Sbjct: 108 DCLDIPYIGASVLSSAAGMDKEIMKNLFSYHKIPQARYRVYRQNHLENGLDGIISEIDRF 167 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 LG P FVKPAN GSS+GVSKV S + A++ F +D K+I E+ ++GREIEC+VLGND Sbjct: 168 LGWPCFVKPANMGSSIGVSKVHSPGEVKKALEKGFYYDRKLIFEEFVEGREIECSVLGND 227 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +AS GEI+ +FY Y+ KY D + ++V+PA++ + DK R +A++A++ + G Sbjct: 228 QVEASLPGEILPGKEFYDYEAKYKD-NKTRLVIPASLDESVIDKARNLAIKAFKAIDGNG 286 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 ARVD FL +++NEINT+PGFT SMYPKLW+A+GL Y DLI +LIELALE Sbjct: 287 FARVDFFLKNNGVLLVNEINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIELALEDR 343 >UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales RepID=DDL_STAA1 Length = 356 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 216/367 (58%), Gaps = 15/367 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + IVFGGKSAEHEVS+ +A+N+++AIDK ++ V ++ I G W + + Sbjct: 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + D H+ + + D +FP++HG GEDG++QG+ Sbjct: 61 STDELHLENGEALEISQLLKESSSG-----------QPYDAVFPLLHGPNGEDGTIQGLF 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESK 177 V ++P+VG+ VL++A+ MDK V K+L GL P+I+ R+ V K Sbjct: 110 EVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDK 169 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SK +E + + AF+FD K+++EQG+ REIE AVLGND Sbjct: 170 LNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGND 229 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+A+ GE+V FY Y +KY D ++ +PA + ++ +R +A++A++ C+G Sbjct: 230 YPEATWPGEVVKDVAFYDYKSKYKD-GKVQLQIPADLDEDVQLTLRNMALEAFKATDCSG 288 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 + R D F+T +N++ INE N +PGFT SMYPKLW+ GL Y +LIT+LIELA ERH Sbjct: 289 LVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERHQDK 348 Query: 358 NALKTTM 364 K + Sbjct: 349 QKNKYKI 355 >UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUR2_9FIRM Length = 367 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 147/361 (40%), Positives = 218/361 (60%), Gaps = 6/361 (1%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH++SL SA NI+ +I + ++V + I KQG W + L+ + Sbjct: 6 MKIVLLYGGQSAEHDISLISAHNIMQSIMYNYYEVQPVYITKQGDWLKGAPLSGPLSHSN 65 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + P A G+ LI + + T+ +FP++HG GEDG++QG L V Sbjct: 66 QLALTAGPQARWAEGPEGQSVGTLIQPGDIKEADTI--VFPVLHGPNGEDGTIQGFLEVL 123 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLGL 180 +P+VG+ V ASA MDK ++K+L AGL P++ E L Sbjct: 124 GMPYVGAGVTASACGMDKVISKQLFHQAGLPQVPYVAFDSREWAQSPEEWMNRCEGNLLY 183 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPAN GSSVG+SK T+ E+ AV+ A +FD +++VEQGI +E E AVLGND+ Sbjct: 184 PLFVKPANMGSSVGISKATTTEELRAAVEKALQFDRRIVVEQGISAQECEVAVLGNDDAH 243 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS G +V T+DFY YD KY+ + ++ +PA + I+DKI+ A++AY+ L G++R Sbjct: 244 ASVVGRLVKTADFYDYDEKYV-NNTVEMEIPAQLPDAISDKIQEYALRAYRALDGKGLSR 302 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VD F+T +++ INEINT+PGFT SMYP LW+A+GL DLI L++LAL+ A Sbjct: 303 VDFFVTASHDIYINEINTMPGFTPYSMYPCLWEATGLNTRDLIEELLQLALKSFEDKQAY 362 Query: 361 K 361 K Sbjct: 363 K 363 >UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCJ4_THET1 Length = 362 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 155/361 (42%), Positives = 239/361 (66%), Gaps = 12/361 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M++ R+ ++FGG+SAEH+VS+ SA +++ A+ S D++ GI ++G W V + + +L Sbjct: 1 MKRYRLLLLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKMLA 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + VP + + + + L VDV+FP++HG GEDG++QG L Sbjct: 61 SSALF----AGDSDVRDIVPVDSQPRSVP----EALSAVDVVFPLLHGPYGEDGTVQGFL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESK 177 + N+P+VGS VL S+ MDK K++ GL I ++ + R++ +++ES+ Sbjct: 113 ELVNVPYVGSGVLGSSLSMDKIAMKKMFESEGLPITRYLGILRSDWLSDPEGIISKIESE 172 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSS+G++K A++LA ++D ++IVEQG++ RE+ECAVLGND Sbjct: 173 LEYPVFVKPANLGSSIGITKAKDRSSLLQALELASKYDRRLIVEQGVEARELECAVLGND 232 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+AS GEI+ +FY ++ KYI E +K ++PA I P ++D+IR AV+A++ + AG Sbjct: 233 YPRASVVGEILPGDEFYTFEAKYISES-SKTIIPADIPPSVSDEIRDYAVRAFKAVDAAG 291 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 +ARVD FLT EN+V++NEINT+PGFT ISMYPKLW+ASGL Y DL+ +L++LA+ERHA Sbjct: 292 LARVDFFLTSENKVLVNEINTIPGFTPISMYPKLWEASGLSYPDLVRKLLDLAMERHADK 351 Query: 358 N 358 Sbjct: 352 Q 352 >UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces RepID=D1XE41_9ACTO Length = 401 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 141/367 (38%), Positives = 211/367 (57%), Gaps = 18/367 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV +VFGG+S+EH +S+ +A ++ A+D++++DV+ +GI + G+W ++ + Sbjct: 32 KPRVAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRWALTADDPARMAIS 91 Query: 63 DPAHIAL------RPSATSLAQVPGKHEHQLIDA-QNGQPLPTVDVIFPIVHGTLGEDGS 115 D + A +L+ PG + + + L VDV+FP++HG GEDG+ Sbjct: 92 DRQVPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLHGPYGEDGT 151 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS----- 170 LQG L ++ +P+VG+ VLASA DK+ KR+ GL + P+ + + Sbjct: 152 LQGFLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWESDRPAARK 211 Query: 171 -FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 E ++ G PLFVKPA GSS+G++KV A++ A D K +VE ++GREI Sbjct: 212 RIMEFAAEHGWPLFVKPARGGSSMGITKVDDPSGLDEAIEEARRHDPKFLVESLLRGREI 271 Query: 230 ECAVLG-NDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 EC VL D P+AS EI DFY ++ KYID +VPA + E ++R +A Sbjct: 272 ECGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYIDSAAG--LVPAPLTEEQTAEVRRLA 329 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 V A++ C G+ R D FLT + VINEINT+PGFT ISMYP++WQ SG+ Y +L+ RL Sbjct: 330 VDAFEAASCEGLVRADFFLTEDGTFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRL 389 Query: 347 IELALER 353 I+ AL R Sbjct: 390 IQAALNR 396 >UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=D1BDJ8_SANKS Length = 400 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 152/362 (41%), Positives = 217/362 (59%), Gaps = 11/362 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV ++FGG+S EH +S +A ++ AID+ R+DVV +GI + GQW + + Sbjct: 34 RPRVVLLFGGRSGEHVISCATAAGVMRAIDRDRYDVVPVGITRTGQWVLVEDDPDRWAIT 93 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ---PLPTVDVIFPIVHGTLGEDGSLQGM 119 D + + T + + L + G L VDV+FP++HG GEDG+LQGM Sbjct: 94 DGRLPEVDATGTEVLLPLAVGQTALRVLEAGALPRVLGDVDVVFPLLHGPFGEDGTLQGM 153 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA--NRHNISFAEVESK 177 L +A++ +VG+ VLASA MDK K +L GL + P+ + +R + + Sbjct: 154 LELADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVVPPGEWDRDAEAVTARVAG 213 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 LGLP+FVKPA GSS+G+SKV AV A D KVIVE GI GREIECAVLG Sbjct: 214 LGLPVFVKPARAGSSLGISKVDDLADLPAAVAEARRHDPKVIVEAGIVGREIECAVLGGR 273 Query: 238 NP---QASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +AS GEI +T FY ++ KY+ E ++ PA ++PE+ +++ +AV+ ++ Sbjct: 274 RGERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELTCPADLSPELVAEVQDVAVRTFE 333 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + G++RVDVF+T EVV+NEINT+PGFT SMYP++W SGL Y +LIT L+ELAL Sbjct: 334 AVSGEGLSRVDVFVTEAGEVVVNEINTMPGFTPFSMYPRMWDRSGLPYAELITELVELAL 393 Query: 352 ER 353 ER Sbjct: 394 ER 395 >UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAT5_9FIRM Length = 358 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 147/366 (40%), Positives = 225/366 (61%), Gaps = 19/366 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK VG+VFGGKS E++VSL SA N+++ I+K +FD+ ++GI +G++++ + Sbjct: 3 EKKNVGVVFGGKSGEYDVSLLSAYNVINGINKEKFDITMIGITLEGKFYIYKGDVEKIKT 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++ K+ +G + VD+IFP++HG GEDG +QG+ Sbjct: 63 NEWI-------------NDSKNLISDFSLFDGDIINNVDIIFPVLHGQNGEDGRIQGLFE 109 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH-----NISFAEVES 176 + + P+VG +VLAS+ CMDKD+ KR+ R G+ + + + + + E Sbjct: 110 MMDKPYVGCEVLASSVCMDKDIAKRIFRSVGIPVVDDVLVFNTDIETDKLLEATLDRCEE 169 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L P+FVKP N GSSVG+SK + A+ A +FD K++VE+GI REIE AVLGN Sbjct: 170 NLPYPMFVKPVNMGSSVGISKAKDRDSLKEALLKAVKFDTKILVEKGINAREIEVAVLGN 229 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 +P+AS GEIV +FY Y+ KY+ DG+++ +PA I +I +KIR AV+A++ +G + Sbjct: 230 SHPEASYPGEIVSCKEFYDYEAKYLSGDGSRIDIPAKIDDKIIEKIRTYAVKAFKAVGGS 289 Query: 297 GMARVDVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G++RVD FL +++ + +NE NTLPGFTNISMY K+W G+GY+DLI +LI+L ER+ Sbjct: 290 GLSRVDFFLDKDSKDIYLNEANTLPGFTNISMYAKMWDYMGIGYSDLIEKLIDLGFERYE 349 Query: 356 ADNALK 361 + L Sbjct: 350 IKHRLT 355 >UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema RepID=DDL_TREDE Length = 368 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 139/368 (37%), Positives = 216/368 (58%), Gaps = 11/368 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS--DASNYLLNA 61 + + I++GGKS+EHEVSLQSA +I+ IDK + + L+GI K G W++ + ++ Sbjct: 1 MNIAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKN 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + A + +PG + + G D +F ++HG GEDG++QG+ Sbjct: 60 EKAVLKIKKDEAKRVTVIPGGGAKK--GLKAGDEFLPTDAVFAVLHGRFGEDGTIQGLFE 117 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS-----FAEVES 176 +A+LP+VG DV++++ MDK+ TK + +GL I P+I + R + + A E Sbjct: 118 MADLPYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKAILARAEK 177 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L PLF+KP GSSVG V + + + +F +D+K++VE I+ RE+EC+V GN Sbjct: 178 DLEYPLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWDNKILVEACIEAREVECSVTGN 237 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A GEI+ T FY Y+ KY D +GA++ +PA + IR A++AY+ L + Sbjct: 238 TKTVAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLS 297 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G++RVD F+ ++ +NE+NT+PGFT ISM+PK+ ASGL Y +LI LIELA++R Sbjct: 298 GLSRVDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMHLIELAIDRFK 357 Query: 356 ADNALKTT 363 D LKT Sbjct: 358 TDRKLKTC 365 >UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LDC1_GORB4 Length = 358 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 140/361 (38%), Positives = 211/361 (58%), Gaps = 12/361 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 LR+ ++FGG SAEH+VS +A +++ A D+ ++++V +GI K G W +D + L Sbjct: 6 LRLVVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIAALTDGT 65 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P AL + T + + H V+ P++HG GEDG++QGML + Sbjct: 66 PLPDALDVAGTVVDPLTELAAHAADTPT---------VVLPLLHGPHGEDGTIQGMLELF 116 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA-NRHNISFAEVESKLGLPL 182 LP+VG+ VL+SA CMDK + K + AG+ ++ + N A+ +LGLP+ Sbjct: 117 KLPYVGAGVLSSALCMDKAMAKVVAAQAGIPQCRWLEFRDGVDDPNTIVADAVGQLGLPI 176 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 FVKPAN GSSVG++K E + A+++A +D+ VI+E+ + GRE+E AVLG+ P+ S Sbjct: 177 FVKPANLGSSVGITKAHDEAELDTAINVALRYDNVVILEEAVTGREVEVAVLGDTAPETS 236 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GEI S+FY Y+ KYI AK+V+PA ++ E ++R +A + + + C GMARVD Sbjct: 237 VPGEIEPGSEFYDYEDKYIT-GAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVD 295 Query: 303 VFLTPENEVVIN-EINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 F + E+NT+PGFT SMYPKLW+A+G+ Y DLI +L+ AL H Sbjct: 296 FFYEESGRGWLLNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLVTFALGVHRRRVGFS 355 Query: 362 T 362 T Sbjct: 356 T 356 >UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli RepID=DDL_LISW6 Length = 370 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 152/368 (41%), Positives = 227/368 (61%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLTGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + A K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATNTVKLAATESEKSEGEAISPAVLEADDQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN---ISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + + N +E+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVSEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++++ A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKKELEDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLTS---DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY Y KY D + +++P + PEI ++++ AVQA+ L + Sbjct: 242 VCSVPGEILPEGAVATFYDYKAKYQDNN-TALIIPTEVDPEILEQMKEYAVQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y+ LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTDDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYSALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycetales RepID=DDL_STRGG Length = 391 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 212/367 (57%), Gaps = 18/367 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV +VFGG+S+EH +S+ +A ++ AID++ +DV+ +GI G+W ++ + Sbjct: 22 KPRVAVVFGGRSSEHGISVVTAGAVMRAIDRTTYDVLPIGITTDGRWALTADEPERMAIT 81 Query: 63 DPAHIAL------RPSATSLAQVPGKHEHQLIDAQNGQP-LPTVDVIFPIVHGTLGEDGS 115 D + + L+ PG E + + L VDV+FP++HG GEDG+ Sbjct: 82 DRKVPDVDRLTESAEGSVVLSVDPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGT 141 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA--- 172 LQG+L ++ +P+VG+ VLASA DK+ KR+ GL + P+ + N A Sbjct: 142 LQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYEVVRPREWDNDPAAARE 201 Query: 173 ---EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 + + G PLF+KPA GSS+G++KV S E A++ A D K +VE ++GREI Sbjct: 202 RIVDFAGEHGWPLFIKPARGGSSMGITKVDSVEGLDAAIEEARRHDPKFLVESLLRGREI 261 Query: 230 ECAVLG-NDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 EC VL D P+AS EI + DFY ++ KYID +VPA + E ++R +A Sbjct: 262 ECGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYIDSAAG--LVPAPLTEEQTAEVRRLA 319 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 V A+ + C G+ R D FLT + VINEINTLPGFT ISMYP++WQ SG+ Y +L+ RL Sbjct: 320 VAAFDAVSCEGLVRADFFLTEDGTFVINEINTLPGFTPISMYPRMWQESGVDYPELVDRL 379 Query: 347 IELALER 353 I+ AL R Sbjct: 380 IQAALSR 386 >UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria RepID=DDL_CHLT3 Length = 366 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 153/366 (41%), Positives = 224/366 (61%), Gaps = 6/366 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K +V ++FGG+S+EHE+S+ SA++I +A+DK+++ + + I K G+W ++AS +L Sbjct: 1 MNKKKVALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILA 60 Query: 61 ADDPAHIA-LRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D + I L + Q + +DV FP++HG GEDG++QG+ Sbjct: 61 MDFESAIKSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGPYGEDGTVQGL 120 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI---SFAEVES 176 L + ++ +VGS VLASA MDK V K AGL + ++ R A E Sbjct: 121 LEMFDVAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEENRGSVVARAEK 180 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 KL P+FVKPAN GSSVG+SK + + A++LA +D K ++E+ I RE+E AVLGN Sbjct: 181 KLRYPMFVKPANMGSSVGISKAHNRNELIEAIELALAYDRKFLIEKAINAREMEVAVLGN 240 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D P AS GE+V ++FY YD KY+ + ++V++PA I+ K++A A+ A+ C Sbjct: 241 DEPIASAVGEVVPCNEFYDYDAKYV-KGSSEVIIPAQISEAFAGKLKAAALNAFVAADCE 299 Query: 297 GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 GMARVD + E NE+ INEIN++PGFT+ISMYPKL+ G+ YT+LI RLIELALER++ Sbjct: 300 GMARVDFLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELINRLIELALERYS 359 Query: 356 ADNALK 361 K Sbjct: 360 ERKLRK 365 >UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG04_9FIRM Length = 357 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 165/358 (46%), Positives = 223/358 (62%), Gaps = 8/358 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K V ++FG S+E+EVSL+SA +++ I + R+DVV+LGI K G+W S + Sbjct: 1 MGKKTVAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP-TVDVIFPIVHGTLGEDGSLQGM 119 +D A P + ++ P P VD +FP++HG EDG++QG+ Sbjct: 61 SDRWLQNGPVTPAFI---SPDRGAGGILRLLPDGPQPVAVDAVFPVLHGEHSEDGAIQGL 117 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE--VESK 177 L +A L +VG VLASAACMDK VT +L AG+ + P+ LTR + E + +K Sbjct: 118 LEMAGLAYVGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGALAHFDETERMLAAK 177 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN- 236 G P+F+KPAN GSSVGV K A+ AF FD KVI E + G E+ECAVLGN Sbjct: 178 HGYPMFIKPANTGSSVGVGKAKDAGGLCAALSEAFRFDRKVIAETAVVGDELECAVLGNF 237 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D +AS GEIV +FY Y KY+D D + +PA I+ E +++IR AV+A+ +GC Sbjct: 238 DRAEASCVGEIVPRHEFYDYSGKYLD-DSTDLYIPARISGEASERIRQTAVRAFAAMGCT 296 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G++RVD FLT E VV+NEINTLPGFT+ISMYPKL++A GL Y +LI+RLIELA E+H Sbjct: 297 GLSRVDFFLTREGRVVLNEINTLPGFTSISMYPKLFEAVGLPYPELISRLIELAFEKH 354 >UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) n=1 Tax=Rickettsiella grylli RepID=A8PM76_9COXI Length = 365 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 222/370 (60%), Gaps = 20/370 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V +++GG SAEHE+SL SA ++ +D+ +F ++ +GIDKQG+ V+ + Sbjct: 8 KTKVAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQSLYSGDT 67 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 S + LA++ DV+FP++HG LGEDG++QG+L + Sbjct: 68 ILLETENAQSFSGLAELMVD------------KKGHYDVVFPVLHGALGEDGTIQGLLDL 115 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESKLG 179 ++ ++G+DVL SA MDK V+KRL A + + PF+ + ++ ++G Sbjct: 116 MDIAYIGADVLGSAVGMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQEIG 175 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN--- 236 PLF+KP N GSS+G++K+ + A++L F + KV+VE+ ++ RE+E AVL N Sbjct: 176 YPLFIKPVNGGSSLGITKIKKDTDLENAIELVFTYSTKVLVEKALEVREVEIAVLENQKW 235 Query: 237 -DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 P S GEI+ +FY+Y+ KY+DE GA++++PA++ +I+ +A++ + L C Sbjct: 236 GAEPYVSQIGEIIPRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDC 295 Query: 296 AGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +GMAR+D F+ ++ NE+NT+PGFT ISMYP+LW+ SG+ YT L+T LIELAL RH Sbjct: 296 SGMARIDFFIEKRSQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELALTRH 355 Query: 355 AADNALKTTM 364 + LK + Sbjct: 356 QRLSLLKLSF 365 >UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizobium RepID=DDLA_RHILO Length = 357 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 160/360 (44%), Positives = 228/360 (63%), Gaps = 9/360 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK RV I++GG+SAEH+VS SA N++ AID++R++VV + I + G+W + +S Sbjct: 3 EKTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSE---AG 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A + +A +PG + +NG+ VDV+FP++HG GEDGS+QG Sbjct: 60 ADGAGAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAE 119 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 VA++ +VG +LASAA MDKDV KRLLR+AGL +A +T+ + + SF E+ LGLP Sbjct: 120 VADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDV--GSFQEIAGALGLP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNP 239 F KPA QGSS GVSKV + + AV+ A +D K ++E+ + GREIEC+VL + + Sbjct: 178 FFAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSL 237 Query: 240 QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEI+ FY Y+ KY D +GA V VPA + ++ + +A +A++ LGC Sbjct: 238 TVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEA 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 MARVD FL + +++NE+NTLPGFT+ISMY K A+G+GY+ +I LIE AL RH A Sbjct: 298 MARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALARHRAR 357 >UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD66_9FIRM Length = 364 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 144/356 (40%), Positives = 206/356 (57%), Gaps = 6/356 (1%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 K+ V ++FGG S+EHEVS S N V ID+S+++V+ +GI K+G+W ++A+ + Sbjct: 5 NKMCVALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMAD 64 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + ++ H L +DV+ P++HG GEDG++QG+L Sbjct: 65 GSWEEL-PGNMPCVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLE 123 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKL 178 +A + +VG VLAS+ CMDK V L G+ ++ R A VE KL Sbjct: 124 LAGIAYVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKL 183 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P+FVKPAN GSSVG+SKV+++E+ A+ LA E D KV+ E + G+E+ECAV+G+D Sbjct: 184 GWPVFVKPANAGSSVGISKVSNQEELKAAIALALENDRKVVFEAFVDGQEVECAVIGSDP 243 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A+ GEI+ ++FY YD KY ++ V+PA + D+++ A AY L C G+ Sbjct: 244 AVATRPGEILAGAEFYTYDDKY-KNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGL 302 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 AR D F+ V+INEINT PGFT ISMYPKL + GL LI RLI LA+ER Sbjct: 303 ARCDFFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALAVER 358 >UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteobacteria RepID=DDL_BLOPB Length = 368 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 186/359 (51%), Positives = 252/359 (70%), Gaps = 10/359 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL +GI+ GG+S EHE+SL+SA I IDK RF+ ++L IDK+G WH+ D ++ Sbjct: 1 MSKLCIGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKD-----ID 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D ++ + L P +N L DVIFP+VHGTLGEDG+LQG+L Sbjct: 56 FNDLSYHKDEKISILLQNCP---YPFKFHTKNINILLKFDVIFPVVHGTLGEDGALQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + NLPFVGS+VL+S+ MDKDV+K LLRDAGL++ PF T+ ++HNI F S GL Sbjct: 113 CMMNLPFVGSNVLSSSVGMDKDVSKCLLRDAGLSVVPFRTVLAQDQHNIDFDYFVSIFGL 172 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKP+NQGSS+GVSKVT + + +A+ AF F +K+++E I GRE+ECAVLGNDNP+ Sbjct: 173 PLFVKPSNQGSSIGVSKVTKCKDFNLALIKAFSFSNKILIEPAIIGRELECAVLGNDNPK 232 Query: 241 ASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 S CGE++L ++FY Y KY+ + A++++PA I I+D IR IA++A+Q L C+GMA Sbjct: 233 ISVCGEVILSDNNFYTYHDKYV-KRKAQIMIPALINDAISDDIRHIALRAFQVLNCSGMA 291 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 RVDVFL +N++ INE+NTLPGFT SMYPKLW+ SGL +LIT+L+ELAL+ H N Sbjct: 292 RVDVFLNLDNKIFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELALDLHDKKN 350 >UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacillales RepID=DDL_LACRD Length = 378 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 141/366 (38%), Positives = 221/366 (60%), Gaps = 9/366 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL + ++FGG S+EH+VS +SA NI DA+DK ++DV L K G ++ S + + Sbjct: 3 QKLHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDG 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + P L +D FP++HG LGEDG++QG+ + Sbjct: 63 EPEDQVVAEAYQKMDMSSP------LAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFK 116 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + N P+VGS++ ASA DKD+TK+++ AG+ P++ +T N+ + S+ +E KLG Sbjct: 117 LLNKPYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNL 176 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQ 240 FVKPA QGSSVG+ +VT+ E+Y A+D AF++D+K++VEQGI +EIE ++LGN++P Sbjct: 177 TFVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPI 236 Query: 241 A--STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A + FY Y+ K++D G +P + + D+I +A++AY+ LG GM Sbjct: 237 ASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGM 296 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 AR+D + N + E NTLPGFTNIS+YP++W+ SG+ Y+DLI RLI+L L+ ++ Sbjct: 297 ARIDFLVDSNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQLGLQEFERNS 356 Query: 359 ALKTTM 364 +K Sbjct: 357 KIKYDF 362 >UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci RepID=DDL_DEIGD Length = 339 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 147/357 (41%), Positives = 213/357 (59%), Gaps = 24/357 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K R+ ++ GG+S EHEVSL+SA++++ A+ + +FDV + I QG+W + L Sbjct: 2 KKRILLLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALETG 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + D +FP++HG +GEDG++QG+L + Sbjct: 62 EAVR------------------GGDLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN--ISFAEVESKLGL 180 A +PFVGS VL SA MDK +TK++L G+ + R +LG Sbjct: 104 AGIPFVGSGVLGSAVSMDKVMTKQVLASVGMPQVAWRLAVRREWQERPQEVRARAGELGY 163 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ--GIKGREIECAVLGNDN 238 PLFVKPAN GSSVG+SKV+ + A+DLAF +VI+E K RE+E +LGND Sbjct: 164 PLFVKPANLGSSVGISKVSGPGELERALDLAFSLGRRVILEAMTAHKPRELEVGILGNDA 223 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P AS GE+ +DFY Y+TKY E A + +PA + PEI +++R +A+ A++TL CAG+ Sbjct: 224 PIASPVGELRFEADFYDYETKYT-EGRATMHIPAPLPPEIAERVRMLALTAFRTLDCAGL 282 Query: 299 ARVDVF-LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 ARVD F + E+ +NE+NT+PGFT SMYPKL++A+GL Y++L+TRL+ELALER Sbjct: 283 ARVDFFYVEQTGELFLNEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALERR 339 >UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycetales RepID=DDL_MYCUA Length = 373 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 154/364 (42%), Positives = 226/364 (62%), Gaps = 16/364 (4%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 E+LRV +VFGG+S EH +S SA +I+ +D RF+V+ +GI QG W ++D + L Sbjct: 9 ERLRVAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAI 68 Query: 62 DDPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 D + + + +P + + G+ L +VDV+FP++HG GEDG++Q Sbjct: 69 TDRRLPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQ 128 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L +A +P+VG+ VLASAA MDK+ TK+L AGL I P L + + E + Sbjct: 129 GLLELAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSRQSLD--REELQR 186 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-- 235 LGLP +VKPA GSS+GVS+V+S ++ A+ A D KVIVE I GRE+EC VL Sbjct: 187 LGLPAYVKPARGGSSIGVSRVSSFDELPAAIAAARRHDPKVIVEAAINGRELECGVLEFP 246 Query: 236 NDNPQASTCGEIVL------TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 + +AST GEI + FY ++TKY+D D A++ VPA + ++ D +R +A++A Sbjct: 247 DGRLEASTLGEIRVAGVRGREDGFYDFETKYLD-DAAELDVPAKVEDDVADAVRQLAIRA 305 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 ++ + C G+ARVD FLT + VINE+NT+PGFT ISMYP++W ASG+ Y L+ ++E Sbjct: 306 FEAIDCQGLARVDFFLTDDG-PVINELNTMPGFTTISMYPRMWVASGVDYPTLLATMVET 364 Query: 350 ALER 353 AL R Sbjct: 365 ALSR 368 >UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0Y9_9ZZZZ Length = 356 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 142/358 (39%), Positives = 217/358 (60%), Gaps = 11/358 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHV-SDASNYLLNAD 62 +++ ++FGG S+EH++S SA +I+ ++K ++++ +GI + G+W D + + Sbjct: 1 MKLAVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWFYCPDCDPDRVESG 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + P + H ++ + G+ + +D +FP++HG GEDG++QG+L Sbjct: 61 AWERMT---GKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQGLLE 117 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN---ISFAEVESKL 178 +A +P+VG V ASA MDK +TK+++ G+ A + R + A L Sbjct: 118 LAGIPYVGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAAETL 177 Query: 179 G-LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 G P+FVKP +QGSSVGV+K + + A + A + D KV+VE+ I G E+ECAVLGN Sbjct: 178 GAFPVFVKPCSQGSSVGVAKANNLLELAEGLTEALKLDTKVLVEEFIDGHEVECAVLGNL 237 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 PQAST GEI T +FY +D KY DE +++ +PA I E +R AV+ Y LGC G Sbjct: 238 EPQASTVGEIAPTQEFYTFDAKYKDES-SRLYIPAHITEEQLATVRQDAVRVYTALGCRG 296 Query: 298 MARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 ++RVD F+T + EVV NE+N +PGFT+ISMYPKL+ G+GY +L+ RLI LALE H Sbjct: 297 LSRVDFFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELLDRLISLALEEH 354 >UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R6P1_9CHLA Length = 788 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 135/363 (37%), Positives = 197/363 (54%), Gaps = 29/363 (7%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KL +GI++GGKS EHEVSL S++ I ++D+ ++ I K+G+W + + Sbjct: 452 KLHIGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKNE-------- 503 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 G E LI +Q Q L D++FPI+HGT GEDG++QG L + Sbjct: 504 ------------------GDSEEFLISSQVLQQLQKCDLLFPILHGTFGEDGTIQGFLEI 545 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESKLG 179 P+VG D +SA CMDK + KRL++ AG+ + FI + + N + E+ KL Sbjct: 546 LGKPYVGCDHQSSAICMDKAIAKRLMQHAGIQTSSFIAFSETDWKNRAKDLLHEIREKLI 605 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKP + GSS+GV +VT+E + A+ AF FD ++VE I GREIE AVLGND Sbjct: 606 FPIFVKPVHLGSSIGVQRVTNETELDAAIRNAFAFDPVILVENEIAGREIEFAVLGNDQI 665 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 GE+ + Y KY ++ A + + ++ +AIA++AYQ C GMA Sbjct: 666 TVLPPGEVFSAGKIHDYRGKYSRDNATPSTPQADLPEKWMEEGKAIALKAYQAATCKGMA 725 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 R+D FL NEIN +PGFT S+YP++ +A+G +LI RL+ L L+R Sbjct: 726 RIDFFLDQSGSFWFNEINPIPGFTPFSLYPQMCEANGFSNEELIDRLLILGLQRSRQKEK 785 Query: 360 LKT 362 Sbjct: 786 KAY 788 >UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID=C7H403_9FIRM Length = 365 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 145/356 (40%), Positives = 209/356 (58%), Gaps = 6/356 (1%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL V ++FGG S+EHEVS SA VD +D++R++V+ +GI ++G+W ++A++ + Sbjct: 6 DKLCVVVLFGGMSSEHEVSRVSAGTFVDNLDRARYEVLTVGITREGRWLCTEATSAQMAD 65 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + ++ H L VDV+ P +HG GEDG++QG+L Sbjct: 66 GSWEEL-PGNMPCVISPDRADHGMILFTPSGQVEKLHVDVVIPALHGLWGEDGTVQGLLE 124 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKL 178 +A +P+VG VLASA CMDK V L AG+ +++ R + +KL Sbjct: 125 LAGIPYVGCGVLASAVCMDKAVANALFDAAGIPHTKWLSACRWEIESDLDGVCDGAIAKL 184 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P+FVKPAN GSSVG++K ++ A+ LA E DHKV+ E + G E+ECAV+G+D Sbjct: 185 GWPIFVKPANAGSSVGITKAHDRDELKQAIALALENDHKVVFEAFVDGHEVECAVIGSDP 244 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A+ GEI+ ++FY YD KY ++VV+PA ++ E D+++ A AY L C G+ Sbjct: 245 AVATRPGEILAGAEFYTYDDKY-KNGVSQVVIPARLSEEKLDEVKTYAAMAYTALNCEGL 303 Query: 299 ARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 AR D F+ + V+INEINT PGFT ISMYPKL + G LI LIELALER Sbjct: 304 ARCDFFVEHGTDRVMINEINTFPGFTPISMYPKLMEHEGTPVPALIDHLIELALER 359 >UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN Length = 350 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 136/353 (38%), Positives = 203/353 (57%), Gaps = 6/353 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+KL V I+FGG S+E+EVSL+S ++++++ +++V+LLGI ++GQW + + Sbjct: 1 MKKLTVAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITREGQWLRYTGNIESIR 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP-LPTVDVIFPIVHGTLGEDGSLQGM 119 D P + ++ +NG + VDV+FPI+HG GEDG++QG+ Sbjct: 61 NDSWHQ---SEKCVPAFLSPCRQVRGIVTQENGAMTVTKVDVVFPILHGKNGEDGTVQGL 117 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +A +PFVG L+SA CMDKD+ L +G+ + + N + LG Sbjct: 118 LELAGIPFVGCHTLSSAICMDKDIAHTLAEGSGIKTPRSVAVYP-NTDLATVQAATEPLG 176 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 PL+VKPA GSS+G++K S + ++ A + D KV++E+ I G E+ CAVLGN Sbjct: 177 FPLYVKPAKAGSSIGITKAYSLSELFFGIENALQHDDKVVIEENITGFEVGCAVLGNREV 236 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EI L F+ Y KY E V PA I E+ KI+ A YQ GC G A Sbjct: 237 IVGEVDEIELLQGFFDYTEKYSLETAHIHV-PARIDEELAHKIKQTATHLYQVFGCRGFA 295 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVD+F+TP+ ++V NE+NT+PGFT+ S YP + +A+G+ Y +L+ LI LALE Sbjct: 296 RVDMFVTPDGDIVFNEVNTIPGFTSKSRYPSMLRAAGISYKELLDTLIMLALE 348 >UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacteria (class) RepID=DDL_KINRD Length = 376 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 141/366 (38%), Positives = 206/366 (56%), Gaps = 15/366 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV +VFGG+S+EH +S +A ++ A+D +DVV +GI G+W + + D Sbjct: 6 KPRVAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTD 65 Query: 63 DPAHIALRPSATSLAQVPGKHEHQ-----LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 + + A L VDV+ P++HG GEDG+LQ Sbjct: 66 GALPEVPATGTPVGLPLDVDTKALQRLGGAPGAPALAELGEVDVVLPLLHGPFGEDGTLQ 125 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT--RANRHNISFAEVE 175 G+L +++ +VGS VLASAA MDK V K LL GL + P+ + R + Sbjct: 126 GLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSFRARRWDTDRDGVVAEV 185 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 LG P+FVKPA GSS+G+++VTS E A AV A D KV+VE + GREIEC VL Sbjct: 186 EALGYPVFVKPARAGSSIGITRVTSREGLAAAVAEAVSHDPKVVVEAALVGREIECGVLE 245 Query: 236 N---DNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 + P S GE+ + DFY ++ KY+D ++ PA + ++ +R AV+ + Sbjct: 246 DLDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCPADLPDDVVAAVRRTAVRVF 305 Query: 291 QTLGCAGMARVDVFLTP---ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 + +G G+ARVD+F+ P E+ +V+NEINT+PGFT SMYP++W A+G+ Y +L+ RLI Sbjct: 306 EAMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRLI 365 Query: 348 ELALER 353 +LAL R Sbjct: 366 QLALRR 371 >UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=DDL_SOLUE Length = 325 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 148/362 (40%), Positives = 221/362 (61%), Gaps = 40/362 (11%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KLRV +++GG++ EHEVS++SAK+I+ +D +++ + ID+ G+W Sbjct: 2 KLRVAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKWSPGPILPEPGAHA 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + +DV+FP++HGT GEDG++QG+L + Sbjct: 62 N-----------------------------------IDVVFPVLHGTFGEDGTVQGLLEL 86 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A+LP+VG+ VL SA MDK++ KR+ ++ L I ++T+TR S + +L P+ Sbjct: 87 ADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIVDYVTVTRQT---PSIVDACRRLPFPM 143 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 FVKPAN GSSVG+SK E++ A LA ++D K+IVE+GI+GRE+EC+VLGN+ P AS Sbjct: 144 FVKPANLGSSVGISKAHDEQELEAAFSLAKQYDRKIIVERGIEGRELECSVLGNEAPMAS 203 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ + +FY Y+ KY+ D A+ VPA + E D+IR +AV+ Y+ + C GMARVD Sbjct: 204 LPCEILPSREFYDYEDKYLL-DMARTQVPADLPGERTDEIRRLAVECYRAVECEGMARVD 262 Query: 303 VFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 FL N + INEINT+PGFT+ISMYPK+W+ SG+ + L+ +LIE AL+RH + Sbjct: 263 FFLEHGTNRLYINEINTIPGFTSISMYPKMWEHSGIPFCTLLDQLIEFALDRHRQKQVTR 322 Query: 362 TT 363 Sbjct: 323 FA 324 >UniRef50_A9N8L3 D-alanine--D-alanine ligase n=6 Tax=Coxiella burnetii RepID=DDL_COXBR Length = 372 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 152/360 (42%), Positives = 229/360 (63%), Gaps = 2/360 (0%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EKL + ++ GG+S EHE+S+QSAKNIV+ +D +++ + ++ I G+W++ D L Sbjct: 3 EKLHISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIVHVGRWYLIDQPEMFLAH 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 P H+ SA + G + D +FP+VHGT GEDG+LQG+L Sbjct: 63 -SPDHLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLE 121 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + NLP+VG++V +SA CM+KD+TK +LR G+ + + TL+ + + + + G Sbjct: 122 LLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTS 181 Query: 182 -LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 LFVK + GSSV V +E ++ AV F +D +++VE I+GREIECAVLGN P+ Sbjct: 182 ELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIRGREIECAVLGNGAPK 241 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS GEI+ D+Y+YD KY+D +GA ++ + +I+ IA+ A++ + C+GMAR Sbjct: 242 ASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMAR 301 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VD F+TP N+V++NEINT+PGFTNISMYPK+W+ASGL +L+ +LIELA++RH L Sbjct: 302 VDFFVTPNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELAIDRHQEQQKL 361 >UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcales RepID=DDL_THEEB Length = 343 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 162/366 (44%), Positives = 230/366 (62%), Gaps = 34/366 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASN 56 M +LRVG++FGG+S EHEVS+ SA I A + R++V+ + I+K G+W ++ Sbjct: 1 MGRLRVGLLFGGRSREHEVSVVSAAAIAQAFAAGDNGDRYEVIPIYIEKDGRWRHTE--- 57 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 +P + Q + T+DV FPIVHG GEDG++ Sbjct: 58 -------------------RVGIPEGTAPESSLWQFPAVVDTIDVWFPIVHGPNGEDGTI 98 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN------RHNIS 170 QG+L + P+VGS V ASA MDK + K + GL P++ L R++ R+N Sbjct: 99 QGLLELMQRPYVGSGVAASAIGMDKILMKTVFGAIGLPQVPYVALQRSDLWSDPCRYNHL 158 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 +E++LG P FVKPAN GSSVG+SK + +Q A+++A E D ++IVE G+ RE+E Sbjct: 159 CDRIETELGYPCFVKPANLGSSVGISKAKNRQQLTTALEVAAELDRRIIVEAGVVARELE 218 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 CAVLGND PQAS GEI +S+FY Y+TKY D A++ +PA I P ++++IR++++QA+ Sbjct: 219 CAVLGNDKPQASVVGEITYSSEFYDYETKYTD-GRAQLHIPAEIPPAVSEQIRSLSLQAF 277 Query: 291 QTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 Q LG AG+AR D F P EV+INE+NTLPGFT +SMYP+LW ASGL + +L+ RL++L Sbjct: 278 QALGAAGLARFDFFYVPSTGEVLINEVNTLPGFTALSMYPQLWAASGLSFPELVHRLVQL 337 Query: 350 ALERHA 355 ALE HA Sbjct: 338 ALEWHA 343 >UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetales RepID=C7QH14_CATAD Length = 394 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 147/387 (37%), Positives = 217/387 (56%), Gaps = 31/387 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAID----KSRFDVVLLGIDKQGQWHVSDASN- 56 +++RV +VFGG+S+EH +S +A +++DA+ R+++V +GI G+W ++D + Sbjct: 9 KRIRVAVVFGGRSSEHAISCVTAGSVLDALRNGPEPQRYEIVPIGIASDGRWVLADLPDG 68 Query: 57 ----YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP------LPTVDVIFPIV 106 + I L SA V + + +P L VDV+ P++ Sbjct: 69 GDLNLAITDGRLPEIGLPASAERANLVTMAGDPTARELTVHEPGAVPKSLGEVDVVLPLL 128 Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 HG GEDG+LQG+L +A +P+VGS VLASA MDK+ KRLL AG + P+ + + Sbjct: 129 HGPYGEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYEVVRPRDW 188 Query: 167 ----HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ 222 + +LG P+FVKPA GSS+G++KV + E+ A+D A D KV+VE Sbjct: 189 GTEEGRAAVRLAVEELGYPVFVKPARAGSSMGITKVDAPEELDQAIDAARRHDPKVLVEA 248 Query: 223 GIKGREIECAVLGNDNP----QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAP 276 I+GREIEC VL P +AS E+ + FY + KY+D +V +PA ++ Sbjct: 249 AIEGREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLD-GSTEVDIPARLSA 307 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NEVVINEINTLPGFTNISMYPKL 331 E + IR AV ++TLGC G+ARVD F ++NEINT+PGFT SM+P++ Sbjct: 308 EEIEDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFTPTSMFPQM 367 Query: 332 WQASGLGYTDLITRLIELALERHAADN 358 WQA+GL Y +LI RLI+ AL R A Sbjct: 368 WQAAGLSYPELIARLIDTALLRPAGLR 394 >UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FAD8 Length = 371 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 141/360 (39%), Positives = 204/360 (56%), Gaps = 9/360 (2%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 V ++FGG+S+EH VS +A ++ AI + V+ +GI K G W + + + + D Sbjct: 10 VAVLFGGRSSEHAVSCVTAAGVIRAIADDAYRVLPIGITKAGVWRIVEDWSTMAFDPDNM 69 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQ--PLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + + + L G L +VDV FP++HG GEDG+LQG+ ++ Sbjct: 70 PEVVDNGTEIIPPISAQGSPLLQRDAEGNYSELGSVDVYFPLLHGQYGEDGTLQGLFELS 129 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA--NRHNISFAEVESKLGLP 181 + FVGS V ASAA MDK TK L+ AG+ P+ +T + + LGLP Sbjct: 130 DTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWELVTETMWEADQAEAQDRITGLGLP 189 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG---NDN 238 +FVKPA GSS+GVS+V S E A+ AFE D KVIVE + GREIECAVLG + Sbjct: 190 VFVKPARAGSSMGVSRVESAEGLDQALRSAFEHDSKVIVEPQVVGREIECAVLGSVHDRE 249 Query: 239 PQASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 + S GEI ++ + FY ++ KY++ A++ PA + +I+ ++ Q ++ C Sbjct: 250 VRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLTCPARVDETTTARIQELSAQVFRLFDCT 309 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G++RVD F+T EV+INEINTLPGFT S YP +W SG+ Y LI+ LI +AL HA Sbjct: 310 GLSRVDTFVTDAGEVLINEINTLPGFTPTSAYPFMWSKSGIEYPALISELITIALVDHAR 369 >UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEL0_GEMAT Length = 344 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 111/356 (31%), Positives = 174/356 (48%), Gaps = 14/356 (3%) Query: 1 MEK-LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M K LR+ ++ GG SAE +VSL S I A+ + +V+ L + ++ S Sbjct: 1 MSKSLRITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEGVLTRETERSLLAS 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + L D +F +HG GEDG++Q + Sbjct: 61 GVGSAPPSLEALAGLE-------SRALSPVLGTLPELTEADCLFLALHGGQGEDGTIQAL 113 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN-ISFAEVESKL 178 L + +P+ GS LASA MDK ++K +LR AG+ A +I + + +V L Sbjct: 114 LDMVGVPYTGSGHLASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLDADDVGRHL 173 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+ VKP+ QGS+VG+S V + E+ A AV AF +D +V++E+ + GRE+ +LG+ Sbjct: 174 DWPVVVKPSKQGSTVGLSIVRAPEELAAAVREAFRYDDEVMIERFVPGRELTVGILGDA- 232 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 EI + Y Y+ KY + V A ++PE K+ A +A+Q L G Sbjct: 233 --VLPTIEIQPVKELYDYECKYTPGMAKEFV--AELSPEEASKLADQAKRAFQALKLRGY 288 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 AR+D L P+ + E NTLPG T S+ P+ A+G+ + DL R+++LAL + Sbjct: 289 ARIDFRLDPQGQPWCLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLALAKR 344 >UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M645_SALAI Length = 360 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 145/355 (40%), Positives = 212/355 (59%), Gaps = 13/355 (3%) Query: 7 GIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD--- 63 +VFGG+S EH +S SA +++ A+D ++VV +GI + GQW ++ + L D Sbjct: 2 AVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGGDSSQLAITDRRL 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 P A +A L P ++D G + L VDV+FP++HG GEDG++QGML + Sbjct: 62 PEVTAESGTAVVLNADPSSGGLLVLDPAEGSRALADVDVVFPVLHGAYGEDGTIQGMLEM 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A +P+VG++V ASAA MDK+ TK+L G+ + P+ L + +LGLP+ Sbjct: 122 AGIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRSGMTLTEQDKQ---RLGLPV 178 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL---GNDNP 239 FVKP+ GSS G+++VT AV A + D KV+VE + GREIEC VL P Sbjct: 179 FVKPSRAGSSFGITRVTDWADLDDAVANARKIDPKVLVESAVIGREIECGVLEAEAGGVP 238 Query: 240 QASTCGEIVL--TSDFYAYDTKYIDEDGA-KVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 +AS E+ + DFY ++ KYID D A + +PA + + +++ AV+A+ L CA Sbjct: 239 EASALAEVRVVGDYDFYDFEAKYIDADAACEYDIPADLPERVTRQVQEYAVRAFTALDCA 298 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+AR D F+TPE +V +NE+NT+PGFT SM+P++W ASGL Y L+ RLI AL Sbjct: 299 GLARADFFVTPELDVYLNEVNTMPGFTPTSMFPRMWAASGLEYQKLVNRLIRTAL 353 >UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D443_PAESJ Length = 359 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 214/365 (58%), Gaps = 12/365 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + ++ +++GGKS EHEVSL++A ++ +I++SR++ + + ++G W Sbjct: 2 RTKLYVLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGPI-----A 56 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 R AT P + +++ P P V+ P++HG GEDG++QG+L + Sbjct: 57 KDELTIERLIATPTFPDPARSIGEILSGIMALPGPK--VVLPLLHGPNGEDGTVQGLLEL 114 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLG 179 N+P+VG+ VL++A +DK ++K++L AG+N + + E + Sbjct: 115 VNVPYVGNGVLSAALTLDKAMSKQVLAQAGINQTEYRVYRYEEWITDEESVLRKAEDSIE 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P +VKPA+ GSS+G+S+ T+ + + AF +D K+++E+ + GREI+ AV+GN+ P Sbjct: 175 YPCYVKPASLGSSIGISRCTNRGELLAGIREAFSYDKKLVIEREVSGREIQVAVIGNERP 234 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 AS GE + F+ Y++KY+D+ + +PA +A + +IR +AV+AYQ GC G+A Sbjct: 235 LASLPGEFIHDHIFFDYESKYMDKRLT-MQIPANLADGLTPRIRELAVRAYQAHGCEGLA 293 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQAS-GLGYTDLITRLIELALERHAADN 358 RVD FL E ++ +NEIN LPGFTN SMYP +W+ + G Y++LI +LI A+ RH Sbjct: 294 RVDFFLDGEGQLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLIGHAIARHQNKQ 353 Query: 359 ALKTT 363 ++ T Sbjct: 354 TIQYT 358 >UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiales RepID=A9KKE7_CLOPH Length = 353 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 133/356 (37%), Positives = 209/356 (58%), Gaps = 9/356 (2%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + ++FGG+S+EHEVS SA +++ ID +D+VL+GI K+G+W ++ + + + Sbjct: 1 MDKKTIVVLFGGQSSEHEVSCVSAVTVINHIDLDHYDIVLVGITKEGKWLLTGSVEDITS 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + T++ LI N VDV+FP++HG GEDG++QG+L Sbjct: 61 G-----VWRDGKKTAILSPDRSKPSLLIMEDNKVEYQKVDVVFPVLHGLFGEDGTVQGLL 115 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF--ITLTRANRHNISFAEVESKL 178 +A +P+VG VLAS+ MDK TK ++ G+ A + + N +E+++ Sbjct: 116 ELAGVPYVGCGVLASSVSMDKLYTKIIVDSLGIRQAAYEPVYAKELEEMNKVVERIENRI 175 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F+KP+N GSS G++K + + + + A E D K++VE+ I GREIECAVLG Sbjct: 176 SYPVFIKPSNAGSSKGITKAHNRDDLIVGLKEAAEHDRKILVEETIVGREIECAVLGGME 235 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +AS GEI+ ++FY YD KY + D +K ++ + +I AV+ ++ + + Sbjct: 236 AKASGVGEILAAAEFYDYDAKYNNAD-SKTIISPELPEGKAQEISDAAVKIFRAVDGYSL 294 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +RVD FL + NE+V NEINTLPGFT ISMYP LW+A G+ L+ +LI+ A R Sbjct: 295 SRVDFFLEKDTNEIVFNEINTLPGFTAISMYPMLWEAKGIAKPQLVEKLIQTAFTR 350 >UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiaceae RepID=A8MKQ7_ALKOO Length = 349 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 116/354 (32%), Positives = 218/354 (61%), Gaps = 6/354 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K+ V ++FGG+S+E+EVSL+SA +++ +D ++DV+ +GI + G+W + + + Sbjct: 1 MGKIVVAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGTLDKIK 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 + L S + P K + ++I+ + +D++FP++HG GEDG+LQG+ Sbjct: 61 ENTWF---LDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGL 117 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 + +P+VG DV AS+ C+DKD ++++ AG ++ I + + + + +G Sbjct: 118 FEITGIPYVGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAIDNRTKEDE-INKFAENVG 176 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P++VKP+ +GSS+G++K + ++ A + D KV++E+ I+G E+ CA+LGND+ Sbjct: 177 YPIYVKPSREGSSIGITKAENHSDLMGGIEAALKLDGKVVLEENIEGFEVGCAILGNDDL 236 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 T EI + + F+ + KY ++ +K+ +PA I +++++I+ I Y+ LGC+G++ Sbjct: 237 IVGTVDEIEVPNGFFDFTEKYTLQN-SKIHLPARIDQDLSERIKEIGKGIYKALGCSGLS 295 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 RVD+F+ + +V NE+NTLPGFT S +P + +G+ Y D++ +LI+L ++R Sbjct: 296 RVDLFVDKNHRIVFNEVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLIDLGMQR 349 >UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella RepID=DDL_LEGPA Length = 364 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 142/375 (37%), Positives = 211/375 (56%), Gaps = 23/375 (6%) Query: 1 MEKL-RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M K + +++GGKS EHEVSL SA +++ +D ++ ++ + +DK G++H D ++ L Sbjct: 1 MSKPVNLVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLA 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D + K NG+ +++FP+VHG L EDG LQG+ Sbjct: 61 CSDKLPVVTE------------KSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGL 108 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVES 176 L +A + +VG DVL+SA MDKD+ +RL GL A + L+ A+ EV S Sbjct: 109 LELAGVAYVGCDVLSSAIGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVAS 168 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 + G PLFVKP + GSSVG+ K + ++ AV A +D +++VE+ I GREIE AVL N Sbjct: 169 EFGWPLFVKPCSLGSSVGIHKANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLEN 228 Query: 237 ----DNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 P+ S GEI + +Y+Y KY++ +++PA + + ++++ A + Sbjct: 229 SIPCGKPRVSMVGEIKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIF 288 Query: 291 QTLGCAGMARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 L C GMARVD F+ E+ NEINTLPGFT+ISMYPKLWQA+G+ Y DL+ LI L Sbjct: 289 SYLKCKGMARVDFFVNDKTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLLDELINL 348 Query: 350 ALERHAADNALKTTM 364 A+ H L T Sbjct: 349 AMVHHNCRQHLVTNY 363 >UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCDC65 Length = 356 Score = 366 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 146/360 (40%), Positives = 205/360 (56%), Gaps = 28/360 (7%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + R+ +VFGG+S+EH VS +A+ ++ A+D R+DV +GI G W A L Sbjct: 11 RPRLAVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAWVEETARWDDLAPG 70 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + V + L D +FP++HG GEDG++QG+L + Sbjct: 71 TLPAVRAD------GPVFA-----------WERLAEFDAVFPLLHGPWGEDGTVQGLLEM 113 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE--SKLGL 180 A++ +VG+ VLASA MDK TK + AGL P++T+ + LGL Sbjct: 114 ADIRYVGAGVLASAVSMDKPFTKTVFSAAGLPQIPYVTIRPWEWNRERSRVEARIRALGL 173 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLG--ND 237 P+FVKPA GSS GV+ V S + AV A FD KVIVE +G RE+EC VL + Sbjct: 174 PVFVKPARAGSSSGVAMVESWDDLDAAVVAARAFDPKVIVEAFARGKRELECGVLQGPDG 233 Query: 238 NPQASTCGEI----VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P AS GEI DFY ++ KY+D + +VPA I ++++IR AVQA++ + Sbjct: 234 RPVASVVGEITVAAESDHDFYDFEAKYLD-GTSVNLVPADIPVTLSERIRTYAVQAFEAV 292 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 GC G+ARVD FLT + +V+NEINT+PGFT SM+P LW+ASG+ Y DL+ RL+ LAL+R Sbjct: 293 GCEGLARVDFFLTDDG-LVVNEINTMPGFTPFSMFPLLWEASGVRYEDLVDRLVRLALDR 351 >UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y930_9FIRM Length = 350 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 127/353 (35%), Positives = 200/353 (56%), Gaps = 10/353 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EKL V ++FGG S E+ VSL SA ++ A+D R+ VV +GID QG W ++ AS + A Sbjct: 3 EKLNVAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEA 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D + + +LA+ VDV FP++HG GEDG+LQGM Sbjct: 63 DQWHTASDQRLRLTLAR------RNFELKDETGEAVDVDVFFPVLHGRNGEDGTLQGMFE 116 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + ++PFVG + AS MDK ++ +L R G+ ++PF+ + E +L LP Sbjct: 117 LFHIPFVGCGMDASLLGMDKALSHQLARQNGIEVSPFVVFAYSEIDQK--RESLKRLHLP 174 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 FVKPA GSS+G++K+ + E+ A A + D ++++E+ + G EI C++L + Sbjct: 175 CFVKPARGGSSIGITKINTWEELDAACACAAKHDRRILIEEAVSGEEIGCSILETPDGLV 234 Query: 242 STCG-EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 I L SDF+ Y+ KY+D A+V PA + +++++R +A + ++ C G+ R Sbjct: 235 LGAVDRIHLNSDFFDYEEKYVDT-HAEVECPAQLPDFVSEQMRRLARKLWEIHHCQGLVR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 VD FLTP+ ++ NEINTLPG T S YP++ +G+ + ++ LIE AL+R Sbjct: 294 VDCFLTPDQRILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEALQR 346 >UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria RepID=DDL_BIFLI Length = 395 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 150/395 (37%), Positives = 220/395 (55%), Gaps = 43/395 (10%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS--DASNYL 58 M K RV +++GG++ EH +S S ++ A+D RF+ + +GI K G+W ++ D + Sbjct: 1 MAKKRVVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDPRGWN 60 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP----------------------- 95 L+ + + + P + + P + + + Sbjct: 61 LDGGELPTVKITPESRPVMLDPSRGQDGFFIGEPSHINSADSGFGTSFVSMPDPEMHHAL 120 Query: 96 --LPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL 153 L VD + P++HG GEDG++QG+L + +P+VG V ASAACMDK TK +L AG+ Sbjct: 121 TSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLGAAGI 180 Query: 154 NIAPFITLTRANRHNIS--FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ-------Y 204 AP +T+ N ++ L PLF+KP+ GSS GV+KV + Sbjct: 181 PTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADDRETQQDRL 240 Query: 205 AIAVDLAFEFDHKVIVEQGIKGREIECAVL---GNDNPQASTCGEIVLTS----DFYAYD 257 A A+ A E D KV+VEQGI GREIECAVL D P+AS GEIVL FY +D Sbjct: 241 AAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFD 300 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 +KY+D + V VPA + + + +R +A +A++ + AG++RVD F+TP+ V++NEIN Sbjct: 301 SKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTPDGTVMVNEIN 360 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 T+PGFT ISMYPK W A+G+ YT+LITRLIE L Sbjct: 361 TMPGFTPISMYPKAWDATGVSYTELITRLIEGVLR 395 >UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S655_9ACTO Length = 377 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 192/363 (52%), Gaps = 11/363 (3%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R+G+VFGG SAEHEVS SA + A+ + VV LGI + G + + Sbjct: 6 RIGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTV 65 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDA--------QNGQPLPTVDVIFPIVHGTLGEDGSL 116 + + +DV+FP++HG GEDG + Sbjct: 66 TAGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVV 125 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI-SFAEVE 175 QG+L +P+VG +LASA MDK KR LR + P++ ++ Sbjct: 126 QGLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLV 185 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L PLFVKPA GSS+G+S+V + AV+ AF DH V+VEQG+ GRE+EC VLG Sbjct: 186 VGLRGPLFVKPARMGSSIGISRVADGDDLVAAVEEAFRHDHVVLVEQGVTGRELECGVLG 245 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 P+AS GE+ + ++ Y KY D ++VPA + E+ ++IR ++V+A+ +G Sbjct: 246 GWQPEASAVGEVRVAGGWFDYRQKYF-GDADPMIVPAPLPDEVTERIRELSVRAFTAIGG 304 Query: 296 AGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G+ARVD +++ +NE+NTLPGFT SMYPK+W SG+ Y +++ RL+ LA RH Sbjct: 305 WGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEVVDRLVALAFTRH 364 Query: 355 AAD 357 AA Sbjct: 365 AAR 367 >UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDP6_ELUMP Length = 353 Score = 361 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 132/366 (36%), Positives = 213/366 (58%), Gaps = 18/366 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL + +V+GGKS EHEVS+ SA ++ + K +++V+ + I K+G W + Sbjct: 1 MGKLTIAVVYGGKSVEHEVSVHSAADVCGILSK-KYNVINIFISKEGLWFAQEKCGPAQP 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D + P + +G + DV+FP++HGT GEDG +QG+ Sbjct: 60 SD-------------INVTPVFSNDCMFQTADGGTIS-ADVLFPVLHGTKGEDGCIQGLF 105 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + P+VG V+ASA MDK+V+K L AG+ P+IT + + F +KLG Sbjct: 106 ELMETPYVGCGVMASAIGMDKEVSKVLAAYAGVPTLPYITFKKGDSVTKDFKAKTAKLGY 165 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLG-NDN 238 P+FVKP N GSS+G++KV E A++ A +FD+ +++E+G++ +EI CAV G +N Sbjct: 166 PVFVKPVNLGSSIGITKVKEEAFLEKAIEFALKFDNDILIEKGVQSPKEIFCAVCGEGNN 225 Query: 239 PQASTCGEIVLT-SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 ++S+CGE++ +F+ Y +KYID +G V VPA+++ E + ++ + ++ G Sbjct: 226 TESSSCGELIPNGHEFFDYHSKYIDPNGCTVKVPASVSEEEDKLMQKYSRMIFKVFKACG 285 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 ARVD L + ++ +EINTLPG +N S++P+LW+A+G Y D++ LI LAL+R Sbjct: 286 FARVDFLLGKDGQIYFSEINTLPGMSNASLFPQLWRAAGKKYEDVLDTLINLALKRREQI 345 Query: 358 NALKTT 363 LKT Sbjct: 346 KTLKTD 351 >UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria RepID=DDL_PELTS Length = 318 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 48/353 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L+VG++ GG+S+E EVSL++ + + +A+ + V + + + + Sbjct: 3 LKVGVLMGGRSSEREVSLKTGEAVYNALKVKNYLAVKIDVGLDVVERIKE---------- 52 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 +D+ F +HG GEDG++QG+L + Sbjct: 53 ---------------------------------ERIDLAFIALHGRYGEDGTIQGLLEML 79 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF----AEVESKLG 179 ++P+ GS VLASA MDK TK++++ GL PF+ + + S + ++G Sbjct: 80 DIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKKEALKESLQACSERICREMG 139 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 LPL VK QGS++G+S V EE A A++LA+++D +VEQ I+G E+ ++LGN+ P Sbjct: 140 LPLVVKAPTQGSTIGMSFVHKEEDMAGALELAYDYDPVALVEQFIRGTEVTASILGNEEP 199 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A EIV + Y Y KY + ++P I + + I+ +AV +++LGC G+A Sbjct: 200 VALPLIEIVSATGVYDYKAKYT-AGMSDHIIPPRIPEKQQNAIKKLAVSTFKSLGCRGLA 258 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVD + + I E+NT+PG T S++P +A+G+ + DLI +L+ELA+E Sbjct: 259 RVDFIVDKQGNPFILEVNTIPGMTATSLFPDAARAAGIEFPDLIEKLVELAME 311 >UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacillus RepID=DDL_LACDA Length = 362 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 161/367 (43%), Positives = 224/367 (61%), Gaps = 20/367 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K +VG++FGG S+E+EVS+ SA NI AIDK +FDV + I G Y+ + Sbjct: 3 KKTQVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSG---------YVASE 53 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D + P L + P +DV+FPIVHG LGEDG LQG+ R Sbjct: 54 ADSYKVLEEPG---YMVEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFR 110 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE-----VES 176 + + PFVG DVLA+A MDK+ TK L + AG+ +A ++++ R + + V Sbjct: 111 LIDKPFVGVDVLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSG 170 Query: 177 KLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 +LG LFVKP+NQGSSVG++ VT + YA A+ AF++D KV+VE+GI G E+E AVLG Sbjct: 171 QLGTSNLFVKPSNQGSSVGITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLG 230 Query: 236 NDNPQASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 ND+P S G+I+ + +Y+Y+ KY E + +PA I E +K++ A++ YQ Sbjct: 231 NDHPVVSGVGQIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITE 290 Query: 295 CAGMARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C+GMARVD L + EV+ NE+N LPGFTNISMYPKL++ +G+ Y DLITRLI LA ER Sbjct: 291 CSGMARVDSMLRESDGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLAEER 350 Query: 354 HAADNAL 360 +A L Sbjct: 351 YAHKKTL 357 >UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZZ06_9SPHI Length = 394 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 138/379 (36%), Positives = 216/379 (56%), Gaps = 23/379 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +G+ FGG+S EHE+S+ SA + AID SR+DV + I K GQW+ + + N Sbjct: 2 KANIGVFFGGRSVEHEISVISALQAIQAIDHSRYDVTPIYISKAGQWYTGEQLLDVENYR 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLID-----AQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 + ++T + P ++ ++ +D+ FP++HG+ GEDG+LQ Sbjct: 62 KLDELL--NNSTKIIMSPNFEDYSFVESGAKGLFKKPLKGKIDIAFPVLHGSFGEDGALQ 119 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEV 174 G+ + +P++G DVL+SA MDK + K +L+++GL + ++ N + +V Sbjct: 120 GLFELMGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVKYVWFYSKNWQQDTTSHIGKV 179 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECAV 233 E LG P+ VKPAN GSSVG+ K + E+ A+D A F HK++VEQ I +EI C+V Sbjct: 180 EQTLGYPVIVKPANLGSSVGIKKAANREELEEAIDYAAGFSHKLLVEQTIVDLKEINCSV 239 Query: 234 LGN-DNPQASTCGEIVLTSDFYAYDTKYIDED------GAKVVVPAAIAPEINDKIRAIA 286 LGN +N QASTC E +++ + +Y KY+ + G K +PA I E++DKI+ +A Sbjct: 240 LGNYENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMSGTKRKLPAEIPTEMSDKIQQLA 299 Query: 287 VQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 V +Q LGCAG++R+D L NEV +NEINT+PG S+ LW+A+ + L+ Sbjct: 300 VDTFQVLGCAGVSRIDFLLDQATNEVYVNEINTIPG----SLSFYLWEATDKNFGQLVND 355 Query: 346 LIELALERHAADNALKTTM 364 LI+ A + + N L + Sbjct: 356 LIDTAFKNYREKNNLTFSY 374 >UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W7_9ZZZZ Length = 348 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 98/356 (27%), Positives = 170/356 (47%), Gaps = 9/356 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG+S+E +VSL + + A+ ++ DVVL+ D + + + Sbjct: 1 MKIAVLCGGRSSERDVSLSTGIQVARALRETGHDVVLV--DACVDFPLDCRPEEVFEKAL 58 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P +A + + + D++F +HG GE+G LQ + + Sbjct: 59 PIENHAIGAAAPCVERFFDRASGFFGKNVLEICKSADIVFNALHGDEGENGKLQAVFDLL 118 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 N+ + GS M+K ++K+L R G+ + L+ +++ AE+ KLGLP Sbjct: 119 NICYTGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSESDKCR--AAELCEKLGLPCV 176 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKPA+ GSSVGVS V + +++ A+D AF +H VIVE+ IKGRE ++G+ + Sbjct: 177 VKPASLGSSVGVSIVRTIDEFFTALDSAFSLEHTVIVEKYIKGREFAVGIVGS---RVLP 233 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 EI+ FY Y KY + PA I + +++ + ++ LG AR D Sbjct: 234 AIEIIPKHGFYDYKNKYQ-PGCTVEICPADIDSDTAERMAEATRKVFRVLGLGAYARADF 292 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + + E NTLPG T +S+ P+ A L + L+ +I+ +L A + Sbjct: 293 MVDENG-IYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIKESLLLRATERR 347 >UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pallidum RepID=DDL_TREPS Length = 396 Score = 356 bits (914), Expect = 9e-97, Method: Composition-based stats. Identities = 130/347 (37%), Positives = 203/347 (58%), Gaps = 7/347 (2%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDA-SNYLLNADD 63 V +++GG+SAEH+VS++SA+ + + + V+L+GI ++G W+ A + L Sbjct: 3 HVTLLYGGRSAEHDVSVRSARFVARTLC-LQHTVMLIGITRRGVWYAQPACALEQLCTGT 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 A + VPG + DV+FP++HG+ GEDG++QG+L + Sbjct: 62 VALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVT--DVVFPVLHGSYGEDGTVQGLLEML 119 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKLGL 180 +P+VG V ASA MDK K L + AGL + PF+ + A++E++LG Sbjct: 120 QVPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGY 179 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPA GSSVG S V + A++ AF++D V+VE+ ++ REIECA+ GN Sbjct: 180 PLFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPYT 239 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 GE++ FY Y+ KY D A+V+V A + ++I +A++AY+ LG G+AR Sbjct: 240 VHGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLAR 299 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 VD FL EV +NE+NT+PGFT+IS++P++ QA+G+ DL+ +L+ Sbjct: 300 VDFFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346 >UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C4ZI29_EUBR3 Length = 369 Score = 356 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 90/358 (25%), Positives = 165/358 (46%), Gaps = 12/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+ + ++ GG S E +VS ++ + A+ ++ V+LL + D + AD Sbjct: 18 KMNIVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRAD 77 Query: 63 DPAH-----IALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 + + P + + D++F +HG GE+G +Q Sbjct: 78 EISVQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQ 137 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 + + + GSD L+SA M+K+ +K+ G+ I++TRA R + + Sbjct: 138 AAFDLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQD---DITKLD 194 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L LP VKP GSS+GV+ V ++ A+D AF++++++++E+ ++GRE V+ Sbjct: 195 LTLPCVVKPCCGGSSIGVTIVRDAAEFKAALDDAFKWENELVIEEFVQGREFSVGVI--- 251 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +A EI FY Y KY PA + ++ ++ A + + +G Sbjct: 252 EGKALPIIEIAPKEGFYDYKNKY-KAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDT 310 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +R D L +NE+ E NTLPG T S+ P+ G+ + L LI+++L+++ Sbjct: 311 YSRSDFLLNDKNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLIDISLKKYE 368 >UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0K0_9FIRM Length = 359 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 131/361 (36%), Positives = 197/361 (54%), Gaps = 22/361 (6%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK V ++FGG+S EHE+S SA I + + VV + IDK G WH D Sbjct: 7 EKKSVAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWHRVDD------- 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + +++ Q L VD+++ ++HG GEDG +QG+ Sbjct: 60 ------------GIIDFTKLDVKNEAESCTIEQCLTDVDIVWSVLHGPYGEDGKIQGLFE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE--SKLG 179 + ++P+VG +V ASA MDK + K + AGL + L + E+E KLG Sbjct: 108 MYDVPYVGCNVTASAIAMDKVIAKNVFEHAGLKTVKYELLLEKEYRDDEERELERIEKLG 167 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T E++ A++ AF++D+++I+E+ I G+E+E AV GN Sbjct: 168 FPMFVKPANMGSSVGISKATDEKKLKKAIEDAFQYDYRLIIEENIIGKEVEVAVFGNGPY 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GEI ++FY D KY +++PA I+ E ++ A A + + C G+ Sbjct: 228 EASVAGEIRPRAEFYDVDAKYHSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGIC 287 Query: 300 RVD-VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 RVD NE+ INE+NT+PGFT ISMYPKLW+ SG+ +L+ R+I E + + Sbjct: 288 RVDSFIKADSNEIFINEVNTMPGFTEISMYPKLWEVSGISNKELLERIINYGYETYKGKS 347 Query: 359 A 359 + Sbjct: 348 S 348 >UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M114_BACS4 Length = 326 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 162/326 (49%), Positives = 231/326 (70%), Gaps = 1/326 (0%) Query: 39 VLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT 98 VL+GIDK G+W++ D +NYL N D+P I + PS + V G+H+ G+ L Sbjct: 2 VLIGIDKNGKWYLLDPNNYLRNMDNPKLIEMIPSDQRVNIVLGEHDCFFTTPD-GRSLGN 60 Query: 99 VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF 158 +DVIFPI+HG+ GEDGS+QG+LR+ PF+G VL SA MDK+V+K+LL +AGL I + Sbjct: 61 IDVIFPILHGSYGEDGSIQGLLRLMGKPFIGPSVLGSAVSMDKEVSKKLLSEAGLFIGKY 120 Query: 159 ITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV 218 T+ + NI + +V+ LG P+FVKPANQGSSVG+SKV ++++ +AVD AF +D+K+ Sbjct: 121 FAYTKDRKGNIDYEKVKENLGTPVFVKPANQGSSVGISKVYEKKKFYMAVDEAFRYDNKI 180 Query: 219 IVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEI 278 ++E+ IKGREIECAVLGN++P AS GE++ T FY+YD KYI+ G ++ VPA + + Sbjct: 181 VIEEEIKGREIECAVLGNEDPIASLPGEVLFTDSFYSYDAKYINSGGVQLKVPAELDGDD 240 Query: 279 NDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLG 338 +K++ A++A++ L C G+ARVD FLT E + +NEINTLPGFT +SMYPKLW+ SGL Sbjct: 241 VEKVKKEAIKAFKALQCNGVARVDFFLTKEGNLFVNEINTLPGFTKLSMYPKLWEVSGLP 300 Query: 339 YTDLITRLIELALERHAADNALKTTM 364 Y DL+ ++I LA+E H + LK + Sbjct: 301 YKDLVNKMIALAIESHKQEQRLKKNL 326 >UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacillus RepID=DDL_LACGA Length = 361 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 159/366 (43%), Positives = 232/366 (63%), Gaps = 19/366 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K++VG++FGG S+E+EVS+ SA NI + ID ++FDV + I G YL N Sbjct: 3 DKIKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDG---------YLAND 53 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D + P + +++ ++ P +DV FPIVHG LGEDG LQG+ R Sbjct: 54 ADSRKVLDNPKMEVANPHKVANISNIVELKD---RPEIDVFFPIVHGNLGEDGCLQGLFR 110 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR-----ANRHNISFAEVES 176 V + PFVG DVLA+A MDK++TK L + AG+ +A +I + R + + + + V S Sbjct: 111 VLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVAS 170 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 +LG LFVKP+NQGSSVGVS VT+E++Y +A+ AF++D KV+VE+ + G E+E AVLGN Sbjct: 171 QLGSDLFVKPSNQGSSVGVSHVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVLGN 230 Query: 237 DNPQASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 D P + G+I+ FY Y+ KY D + + +PA + I +K+R A++ +Q C Sbjct: 231 DKPIVAGVGQIINAKDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATEC 290 Query: 296 AGMARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +G+AR+D L T + EVV+ E+N LPGFTNISMYPKL++ G+ YTDLIT+LI+ A+ER+ Sbjct: 291 SGLARIDSMLRTEDKEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYAMERY 350 Query: 355 AADNAL 360 L Sbjct: 351 DHKKTL 356 >UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4Z4D3_EUBE2 Length = 382 Score = 354 bits (909), Expect = 3e-96, Method: Composition-based stats. Identities = 98/357 (27%), Positives = 171/357 (47%), Gaps = 19/357 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGI-----DKQGQWHVSDASNYL 58 +R+ ++ GG S E +VSL + + +++ ++ + +L I D + + ++ ++ Sbjct: 40 MRIVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDDSEVKTFFTEKNDLG 99 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 +D+ A + + + D++F +HG+ GEDG +Q Sbjct: 100 ELSDNLKKKTADIPAEVKRRTEARES--FFGRNVLELCKEADMVFMGLHGSNGEDGKVQA 157 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + + + G+D L+SA M K++ K++L G+ + +TL + + Sbjct: 158 TFDLLGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGVTLHKG--------HKIEYV 209 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP GSSVGVS +E+++ A+D AF ++ V+VE+ + GRE AVL + Sbjct: 210 PFPCVVKPCCGGSSVGVSIAHNEKEFEDALDEAFSYEDTVLVEEFVDGREFSVAVL---D 266 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +A EI FY Y KY K PA I +I +++ A + Q G Sbjct: 267 GKALPVIEIEPLEGFYDYKNKY-KAGSTKETCPANIPEDIASQMQFWAEKCCQAAGVTTY 325 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 ARVD L N + EINTLPG T+ S+ P+ A G+ Y +L ++IE++L ++ Sbjct: 326 ARVDELLDKNNNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIEISLAKYE 382 >UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes RepID=C7G8P6_9FIRM Length = 351 Score = 354 bits (909), Expect = 3e-96, Method: Composition-based stats. Identities = 90/358 (25%), Positives = 166/358 (46%), Gaps = 12/358 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG S E +VS ++ + A+ ++ V+LL + D + +++ Sbjct: 1 MKIVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEE 60 Query: 64 PAH-----IALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + + P + + D++F +HG GE+G +Q Sbjct: 61 VSVKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQA 120 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + + + G+ L+SA MDK+++K+L AG+ ++ +A+ + + + Sbjct: 121 AFDLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSD---DITKLGV 177 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP GSS+GVS + E+Y A+D AF ++ +IVE+ +KGRE V+ Sbjct: 178 QFPCVVKPCCGGSSIGVSIAHNAEEYKAALDEAFRWEENLIVEEYVKGREFSVGVI---E 234 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +A EI FY Y KY + PA ++ + +K++ A Q Q LG Sbjct: 235 GKALPIIEIAPVQGFYDYKNKYKAGSAVE-TCPAELSEAVTEKMQHYAEQVAQVLGLDTY 293 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 +R D L + E NTLPG T S+ P+ Q G+ + +L +LI+++L+++ Sbjct: 294 SRTDFLLDENENIYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQISLDKYEK 351 >UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE55_9FIRM Length = 312 Score = 353 bits (907), Expect = 5e-96, Method: Composition-based stats. Identities = 114/352 (32%), Positives = 167/352 (47%), Gaps = 46/352 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ R+G+V GG S E EVSL + IV+A+ + +D V + +D Sbjct: 2 MKTKRIGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLDP--------------- 46 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + V V+F VHG GEDG LQ +L Sbjct: 47 ---------------------------SLFPSQIEDAGVKVVFNAVHGLYGEDGRLQAVL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS VL+SA M+K TKR+ G+ A + LT +R ++ KLG+ Sbjct: 80 EMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLTDKDRQTAK-QDIIRKLGI 138 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN--DN 238 P VKPA QGSS+GV+ V EE A++ AF + V+ E G+E+ V+ + N Sbjct: 139 PCVVKPAEQGSSIGVTIVKKEEDLDKALEEAFSYGKLVLAEAFFTGKEVAAGVMMDSSGN 198 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P A I DFY Y KY + PA + ++ AV+AY+ LGC+G+ Sbjct: 199 PIAMPLVLIEPHVDFYDYHNKYT-KGATTYTCPAPFDECLTKALQEEAVKAYKALGCSGV 257 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ARVD + E + E+NT+PG T S+ PK +A GL + DL +++E A Sbjct: 258 ARVDEMVDAEGNFICLEVNTIPGMTATSLVPKAAKAMGLSFPDLCEKILETA 309 >UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiaceae RepID=DDL_CHLP8 Length = 364 Score = 353 bits (907), Expect = 5e-96, Method: Composition-based stats. Identities = 149/360 (41%), Positives = 216/360 (60%), Gaps = 6/360 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K V + FGGKS EH +S+ SA+ + ID SR+D+ L ID+ G WH + +L Sbjct: 1 MPKQTVALFFGGKSVEHIISIISARAVASHIDHSRYDITPLYIDRGGHWHGGACAKRILA 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHE-HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D + ++ + ++DV F +HG+ GEDG +QG Sbjct: 61 LDVAVLLRNGGQDEVFERLDEITSFDEGKRFDLTAFFDSIDVAFLTLHGSYGEDGKIQGC 120 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA---EVES 176 L ++P+ G + +SA MDK +TK DAG+ +A F+++T A+ A V Sbjct: 121 LDTFDIPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFMSVTSADYAADPQAICNAVTE 180 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 + P+FVKPAN GSSVG+SKV + + A+D A D KV+VE+ I GRE+E AVLGN Sbjct: 181 RFAFPVFVKPANLGSSVGISKVHNAAELRPALDKACALDAKVLVEETITGREVEVAVLGN 240 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D+P AS GEI+ SDFY ++ KY+ D AK+V+PA + E++ +R A+ ++ LGC+ Sbjct: 241 DDPIASVPGEIIPGSDFYDFEDKYVKSD-AKLVIPADLPGEVSAAVRNAALTVFKALGCS 299 Query: 297 GMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 GMARVD F+ N +++NEINT+PGFT+ISMYP L ASG+ + +LI+RL+ LALE+ A Sbjct: 300 GMARVDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSASGVEFDELISRLLLLALEKRA 359 >UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae RepID=B7A6N0_THEAQ Length = 321 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 138/352 (39%), Positives = 201/352 (57%), Gaps = 33/352 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 ME +RV ++ GGKS EHEVSL SA+ ++ + F L I K G W + + + L Sbjct: 1 ME-IRVLLIAGGKSPEHEVSLASAEGVLKHMP---FPTELAVIAKDGAWLLGEEALRALE 56 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 A + P P + V+FP++HG +GEDG++QG L Sbjct: 57 A------KVAPKGEHPFPPPLDWD-------------RYGVVFPLLHGPMGEDGTIQGFL 97 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + P+VG+ V SA CMDKD +KR+L AG+ + P++ L R + F Sbjct: 98 EMLGKPYVGAGVAGSALCMDKDFSKRVLAQAGIPVVPWVALYRGETPLVPFE-------P 150 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNP 239 P FVKPAN GSS+G+S+V A++ AF D K +VE+ + G RE+E VLGN Sbjct: 151 PFFVKPANTGSSIGISRVERYADLEEALEEAFRHDRKAVVEKALSGVRELEVGVLGNVFG 210 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GE+ + FY Y+TKY A++++PA + P + ++ +A++AY+ LG GMA Sbjct: 211 EASPVGEVRYEAPFYDYETKYT-PGRAELLIPAPLDPGTEETVQEMALKAYKVLGLRGMA 269 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 RVD FL E E+ +NE+NT+PGFT SM+P+L+ A GL Y +L+ RL+ELAL Sbjct: 270 RVDFFL-AEGELYLNEVNTIPGFTPTSMFPRLFLAKGLTYPELLRRLVELAL 320 >UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W6_9FIRM Length = 358 Score = 353 bits (906), Expect = 7e-96, Method: Composition-based stats. Identities = 128/355 (36%), Positives = 210/355 (59%), Gaps = 11/355 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLR+G+VFGG+S+E+ VSL S + + I +++ L+GI+K G +++ + + Sbjct: 8 MSKLRLGVVFGGQSSEYSVSLHSVTSFLRQIHADNYEMTLIGINKNGHFYLYNGDVDSIE 67 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D T ++ ++ + +D +FP++HG GEDG +QG+L Sbjct: 68 HDTW-----ENEETCVSCAWVNGG--IMPLDGSNKVIELDCVFPVLHGKNGEDGLIQGLL 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + N+ +VG DV++SA MDK++ L ++A + A +I L ANR N +F +++ K+ L Sbjct: 121 ELMNIHYVGCDVMSSAMSMDKEIMHILCKEAKIPCADYICLY-ANRENPTFEQIQEKIEL 179 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDN 238 P +KP N GSS GV V ++E++ A AF +D K++VE+ IKG EI CAV+GN+ Sbjct: 180 PWIIKPCNAGSSYGVHFVNNKEEFESACKDAFFYDGRGKILVEKVIKGFEIGCAVMGNEE 239 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + EI +T F+ ++ KY + A PA I + + + +A + Y + C GM Sbjct: 240 IFTGSIDEIEITGGFFDFEGKYEMKGAAIY-CPARIDEKTFKEAQELARKTYIAMNCCGM 298 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 ARVD+F+T + EV++NE+NT+PG T S YP + + +G+ + DLI +LIELA++R Sbjct: 299 ARVDMFVTEDKEVILNELNTIPGLTATSRYPSMMKVAGIEFADLIDKLIELAMQR 353 >UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUG2_ALKMQ Length = 358 Score = 352 bits (905), Expect = 8e-96, Method: Composition-based stats. Identities = 118/364 (32%), Positives = 200/364 (54%), Gaps = 14/364 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K V ++ GGKS EH VSL SA I++++DK ++ V + I +G W + Sbjct: 2 KTNVYVLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIWSNLGIVEDEIKEI 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + S + ++ +++FP +HGT GEDG++QG+L + Sbjct: 62 SELMYQSSNTVISSIETF---------LRSSFNEREQNIVFPALHGTNGEDGTIQGLLEI 112 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI---SFAEVESKLG 179 ++P+VG+ V++SA +DK VTK L + + L + S +E +G Sbjct: 113 LDIPYVGNGVMSSAIGIDKVVTKDLFAKHNIPQGKYTRLLQHQWKKDKLFSIERIEETIG 172 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P +VKPA+ GSSVG+++ + E+ A+ AF F+ K+++E+ I GRE++ +V+GN+ P Sbjct: 173 YPAYVKPASLGSSVGINRCANREELEAAIHEAFSFEDKLVIEEEIIGREMQISVVGNEFP 232 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +AS GE + F Y KY D + V+PA + ++++ +R +A++++ L C+G+ Sbjct: 233 KASVVGEFIQERQFMDYAAKYTDGKLIQ-VIPAKLTEKVSELMREVAIKSFDVLNCSGLV 291 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASG-LGYTDLITRLIELALERHAADN 358 RVD F+T + +NE+NT+PGFT +SM P LW+ + Y +LI +LI LA ER+ Sbjct: 292 RVDYFVTDDERFYVNEVNTMPGFTKLSMTPALWEKTDQTTYPELIEKLINLAFERYNKRK 351 Query: 359 ALKT 362 + Sbjct: 352 SFLY 355 >UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein vanA n=122 Tax=Bacteria RepID=VANA_ENTFC Length = 343 Score = 352 bits (905), Expect = 9e-96, Method: Composition-based stats. Identities = 127/356 (35%), Positives = 199/356 (55%), Gaps = 18/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D+ L P L+ + + VDV F +HG GEDGS+QG+ Sbjct: 61 NDNCYSAVLSPDKKMHG--------LLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLF 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 113 ELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 167 PVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAAL 226 Query: 241 AST-CGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 +I L + + E G++ + VPA ++ E +I+ A + Y+ LGC Sbjct: 227 VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 287 GLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLALK 342 >UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacillales RepID=DDL_LACLM Length = 349 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 129/360 (35%), Positives = 209/360 (58%), Gaps = 17/360 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWH-VSDASNYLL 59 M K + +++GG+SAE EVS+ SA++++ A++ SRF V I K G++ + ++ Sbjct: 1 MSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDRPA 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + L S ++ + V+FP++HG +GEDGS+QG Sbjct: 61 EEEKLLTNDLAESYPKISPAAIYEKD--------------AVVFPVLHGPMGEDGSIQGF 106 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L + L +VG ++L++++ MDK + K + G+ P++ EV KL Sbjct: 107 LEILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVPYVAAFADENQVEIAQEVVEKLD 166 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPAN GSSVG+SKV A+ A+++D++V++EQG+ REIECAVLGN+ + Sbjct: 167 FPVFVKPANMGSSVGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNSD 226 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A+ GE+V FY Y++KYID + ++ +PA ++ ++ KI+ A +AY+ + AG+ Sbjct: 227 VSATLPGEVVKDVGFYDYNSKYID-NKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGL 285 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 +R D F+T + V +NE+N +PGFT SMYP LW+ GL Y+DLI +L++LA E Sbjct: 286 SRCDFFVTKDGNVYLNEVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLAKETFETRE 345 >UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho africanus TCF52B RepID=DDL_THEAB Length = 367 Score = 351 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 191/363 (52%), Gaps = 10/363 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + VG++FG KS EHE+S+ +A ++ +DK++++++ + I K G+W L N + Sbjct: 2 INVGLLFGSKSVEHEISIITAHQVLSFVDKNKYNIIPIYITKDGKWLTGKILEDLENFKN 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + S + T+DV HG+ GEDGS+QGML Sbjct: 62 LERLEKKSKQISSISAKDGKLILHSNI----KKITIDVCLLTFHGSNGEDGSIQGMLEFL 117 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 N+P+ G + +S MDK +TK +L++ + + F+ + N N + L P+ Sbjct: 118 NVPYTGCGMYSSMYTMDKVITKLILKEKNIPVVDFLYTNKKNYTNDFLNHCKEVLEYPMI 177 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKPA GSS+GV KV + + A++ AF FD KVIVE+ I RE+ CAV+G N S Sbjct: 178 VKPARLGSSIGVKKVNDKCELEEAIETAFSFDDKVIVEKWIDSRELNCAVMGYKNIVVSE 237 Query: 244 CGEIVLTSDFYAYDTKYIDEDG--AKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI DF+ Y+ KY+ + + ++PA I + + I++IA + L C G R+ Sbjct: 238 IEEIKKQKDFFDYNEKYVQKGKKFSNHIIPAPIDENLKNTIKSIARDTFNALECHGNIRI 297 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 D L+ +N++ +NE+N++PG +S Y LWQ SG ++ +I +I +A E + Sbjct: 298 DFLLSKDNKIYVNEVNSIPG--ALSYY--LWQMSGFTFSQVIDNMISIAFEAFKDKKSKI 353 Query: 362 TTM 364 ++ Sbjct: 354 YSI 356 >UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria RepID=DDL_GEOLS Length = 313 Score = 351 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 111/351 (31%), Positives = 175/351 (49%), Gaps = 52/351 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ R+G++ GG SAE +VSL+S + A+ +D L + + + Sbjct: 6 LKQKRIGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDVRHNVALILRE------- 58 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D+ F +HG GEDG +QG+L Sbjct: 59 ------------------------------------EKIDLAFIALHGRYGEDGCIQGLL 82 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS VLASA M K +K+ AGL I P+ T+ + +R N GL Sbjct: 83 ELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQGDRCNAEQL----PFGL 138 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP +GSSVGV+ V E A+D AF +D V+VE+ IKG+E++ +L N Q Sbjct: 139 PVVVKPVQEGSSVGVTIVKKPEDLQAALDEAFRYDTLVLVEKYIKGQEVQVGILAN---Q 195 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EIV ++FY ++ KY D A+ + PA +A + K++ +QA+Q LGC G R Sbjct: 196 PIGAIEIVPKNEFYDFEAKYSD-GMAEHIFPARLAEPLYQKVQQQGLQAHQALGCDGYCR 254 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQA-SGLGYTDLITRLIELA 350 VD +T + + E+NTLPG T +S+ P++ Q +GL + L+ ++ A Sbjct: 255 VDFLVTENGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEALVEQIACSA 305 >UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPX6_9FIRM Length = 370 Score = 349 bits (897), Expect = 8e-95, Method: Composition-based stats. Identities = 135/367 (36%), Positives = 203/367 (55%), Gaps = 15/367 (4%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS----RFDVVLLGIDKQGQWHVSDASNY 57 +KLRV + FGG S+EHEVS SA + A++++ R++V +GI K G+W + Sbjct: 5 KKLRVALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPE 64 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 + + + L +D+ P++HG GEDG++Q Sbjct: 65 AMADGSWEQ--GADCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDGTIQ 122 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA---EV 174 G+ +A +P+VG VLASA CMDK + ++ AG+ + + RA A Sbjct: 123 GLFEMARIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVLDRA 182 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E+ LG P+FVKPAN GSSVG+SK A+D+A D KV++E+ I G+E+ECA + Sbjct: 183 EAALGYPIFVKPANAGSSVGISKAADRAALDAALDVALREDDKVVLEEFIDGQEVECAAI 242 Query: 235 GN----DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 GN N + GEI+ ++FY YD KY ++ V+PA ++ E D+++A A +AY Sbjct: 243 GNPDDPANITTTRPGEILAGAEFYTYDDKY-KNGVSQTVIPAHLSEEKLDEVKAEARKAY 301 Query: 291 QTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 LGCAG++R D F+ V+ NE+NTLPGFT ISMYPKL + G+ + L+ RL++L Sbjct: 302 LALGCAGLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLVDRLLQL 361 Query: 350 ALERHAA 356 A+ R Sbjct: 362 AVRRRKG 368 >UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 Tax=Enterococcus RepID=VANC_ENTGA Length = 343 Score = 349 bits (896), Expect = 9e-95, Method: Composition-based stats. Identities = 116/350 (33%), Positives = 181/350 (51%), Gaps = 12/350 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + ++FGG S E+ VSL SA +++ AID +++V+ +GI W+ + + Sbjct: 1 MKK--IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVR 58 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D + + G+ DV+FP++HG GEDG +QG+L Sbjct: 59 NDTWLEDHKNCHQLTFSS---------QGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLL 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + NLP+VG V ASA CM+K + +L G+ AP + L+R + G Sbjct: 110 ELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGF 169 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KP GSS G++KVT + A+ AF + V++++ I G EI C +LGN+ Sbjct: 170 PIFIKPNEAGSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQLT 229 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 C I L F+ ++ KY + VPA + + +I+ A Y+ LG G+AR Sbjct: 230 IGACDAISLVDGFFDFEEKYQLISAT-ITVPAPLPLALESQIKEQAQLLYRNLGLTGLAR 288 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +D F+T + + +NEINT+PGFT S YP + GL Y L+ +LI LA Sbjct: 289 IDFFVTNQGAIYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338 >UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2RKQ9_ACIFE Length = 310 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 166/353 (47%), Gaps = 47/353 (13%) Query: 1 MEKL-RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M+K RV +V GG S E EVSL + I++A+ + +D V + +D + Sbjct: 1 MDKKDRVAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLDPEH------------ 48 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + V+F VHG GEDG LQG+ Sbjct: 49 ------------------------------IVDQLKASGARVVFNAVHGLYGEDGRLQGI 78 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L + +P+ GS VLASA MDK TK L ++ + A I L + + + ++G Sbjct: 79 LEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDKKRDQDPKA-RILEEIG 137 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 +P VKPA QGSS+GV V E+Q A+ AF++ V+ E G+E+ V+ ++ Sbjct: 138 IPCVVKPATQGSSIGVVIVKDEKQLDDALQEAFQYGDHVLCEAFFTGKEVAAGVMMGEDG 197 Query: 240 QAST--CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +A I +FY + KY + PA E +++ IAV AY+ LGC+G Sbjct: 198 RAVPMPLVLIEPHVNFYDFHNKYT-KGATTYTCPAPFDAETTRRLQKIAVAAYEALGCSG 256 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +AR D+ L + + E+NT+PG T S+ PK A G+ + DL ++++ A Sbjct: 257 VARTDLMLADNGDCIALEVNTIPGMTATSLIPKAAAAMGISFPDLCEKILKTA 309 >UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P076_9BACE Length = 350 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 107/358 (29%), Positives = 170/358 (47%), Gaps = 11/358 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG S E VSL + + +A+ +V L+ + + ++ S Sbjct: 1 MKIVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKGAELSGLFGAPIS 60 Query: 64 PAHIALRPSATSLAQVPGKH---EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 H + A LA V + + D++F +HG+ GEDG +Q Sbjct: 61 EEHKRVSRQAPDLAAVKASRTEGGDSMFGPGVLELCGMADLVFLALHGSCGEDGRVQAAF 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS L SA MDKD+TKR++ D ++ + T++ E L Sbjct: 121 DLMGIPYTGSGYLGSAIAMDKDLTKRMVADV-VSTPGWKTVSYTADDIDGLVETAR---L 176 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PL VKP GSS+GVS + E+ A+ + ++EQ +KGRE++ A+L + + Sbjct: 177 PLVVKPVASGSSIGVSIAHTAEELRTALTEGLALGGRTVLEQYVKGRELQVAILED---K 233 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EI+ FY Y+ KY A+ V PA I+PE K+R AV+ Y+TLG A +R Sbjct: 234 ALPSIEIIPKQGFYDYENKYQ-PGAAEEVCPADISPEAEQKLRDAAVRVYETLGLAVYSR 292 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D L + E EINTLPG T S+ P+ A G+ Y L R+++ +L Sbjct: 293 ADFILDADGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVDASLAARKQGR 350 >UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGF5_CLOCL Length = 341 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 134/357 (37%), Positives = 216/357 (60%), Gaps = 24/357 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + ++FGG+S+E+++SL SA +++ IDK+++ V +GI K+G W+ S + Sbjct: 1 MNK-NIAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKEGLWYEYTGSIDKIE 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +++ D + VDV+FP++HG GEDG++QG+ Sbjct: 60 DGSWI---------------NDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLC 104 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF---AEVESK 177 ++ LP VG+ VL+SA CMDK +K +L D +N+ P+ + N +V K Sbjct: 105 KLLRLPCVGASVLSSALCMDKAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKK 164 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 LG +FVKP+N GSSVGVSK+ +E+ + +A++ AF++D +V+VE+ I REI+ A++ + Sbjct: 165 LGEEVFVKPSNGGSSVGVSKLKAEDSFEVAIEKAFKYDKRVLVEKAIAAREIKVAIIEDG 224 Query: 238 NPQASTCGEIVLTS---DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + GE+V + +FY Y+ KY E +++VPA + E+ DKI A+A++AY+ L Sbjct: 225 IELKTKIGEVVYKNSNKEFYDYEVKYT-EGMNELIVPAKLETEVMDKIEALALKAYKVLD 283 Query: 295 CAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 C GMARVD F+ +E+ +NEINT+PGFT S +PKLW+ +G+ T+LI LI+ A Sbjct: 284 CRGMARVDFFIDRYTSEIYLNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNA 340 >UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaproteobacteria RepID=DDLA_BRUME Length = 353 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 146/356 (41%), Positives = 219/356 (61%), Gaps = 12/356 (3%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 K+R+ ++FGG+SAEH+VS+ SA N+++A+D ++++ V + + + GQW +S N L Sbjct: 4 GKMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEK 63 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + L + DA +D+IFP++HG GEDG++QG+ + Sbjct: 64 PSS------GAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQ 117 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 VA +P G + SA +DKD+ KRL+ +AGL+ A +T+TR S E LGLP Sbjct: 118 VARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQA--LGLP 175 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP-- 239 +F+KPA QGSSVGV KV +E Y A+ F +D K++ E+ I+ RE+EC VL ++ Sbjct: 176 IFIKPARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGAL 235 Query: 240 QASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEIV FY+YD KYID DG ++ VPA + ++ ++IRAIA +A++ LGC Sbjct: 236 FVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDS 295 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 MARVD F+T + +V+NEINT+PGFT++SMY K+ SG+ Y ++I RL+ L R Sbjct: 296 MARVDFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 351 >UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteobacteria RepID=DDL_SYNFM Length = 311 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 115/353 (32%), Positives = 185/353 (52%), Gaps = 48/353 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EKL V ++ GG SAE EVSL+S + + +A+DK R+ V+ Sbjct: 4 EKLTVALLSGGASAEREVSLKSGEQVFNALDKQRYLVLRYDPAHD--------------- 48 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + +DV I+HG +GEDG++QG+L Sbjct: 49 ---------------------------LTRLAADAEKIDVALIILHGRMGEDGTIQGLLE 81 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 +P+ GS VL SA M+K ++K+L AGL +AP + R ++ V +LGLP Sbjct: 82 SLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADRREPPDLDT--VADRLGLP 139 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP ++GSS+G+S V + +Q A AV+ +++D + ++E+ + G EI VLGND+ QA Sbjct: 140 VVVKPEHEGSSIGLSIVRNRDQLAAAVETGWQYDRRCLIEKYVHGIEITGGVLGNDHLQA 199 Query: 242 STCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EI+ +F+ Y KY ++ + PA ++ I K + A +A+Q L C G + Sbjct: 200 LPLIEIIPGEAYEFFDYKAKYT-PGASREICPARLSDTITAKAQEYARKAHQALCCKGYS 258 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R D+ ++ + + I E NT+PG T S++P+ +G+ ++ L+ RLIELALE Sbjct: 259 RTDMIVSGND-IFILETNTIPGMTATSLFPQAAAVAGISFSALLDRLIELALE 310 >UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria RepID=C3RJR8_9MOLU Length = 346 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 118/364 (32%), Positives = 202/364 (55%), Gaps = 32/364 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ ++ GG+S+EH VS S ++++ +D +++++ L+GID G WH DA L + Sbjct: 2 KQKLLVLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQTDLAKN 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 ++ + L DV FP++HG GEDG++QG+ + Sbjct: 62 TWL------------------DNSSMVEDVYGLLKNQDVAFPVLHGMYGEDGTIQGLFEL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA------------NRHNIS 170 A LP+VG V+ S+ MDK TK++L G+ + + + + Sbjct: 104 AKLPYVGCRVMGSSVAMDKIYTKKILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEI 163 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 + +LG+P F+K + GSSVG + ++ + + A ++D V+VE+ I E+E Sbjct: 164 EDYIVRELGMPCFIKASRSGSSVGCYRCDNQTELIGKLSEAAKYDRHVVVEECIDCIELE 223 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 AVLGND+ S G+I+ +FY +++KY DE+ +K +PA + +I ++IR A++ + Sbjct: 224 TAVLGNDDVIVSRVGQIMPHGEFYTFESKYEDEE-SKTCIPALVDEQIQEQIRQYAIKVF 282 Query: 291 QTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + + G++RVD FL + N++ +NEINT+PGFT ISMYP+L G+ Y +L+ RLI L Sbjct: 283 KAVDGHGLSRVDFFLDKKTNKIYLNEINTMPGFTKISMYPQLMNDFGITYPELLDRLIVL 342 Query: 350 ALER 353 AL++ Sbjct: 343 ALQK 346 >UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FYV0_9DELT Length = 360 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 137/373 (36%), Positives = 211/373 (56%), Gaps = 24/373 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M R+ +V+GG+S+EH+VS++SA ++ A+D+SRF+ V + + ++G + L Sbjct: 1 MSPQRLALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPIDASLPG 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + A+ S +A G L + FP++HG GEDG++QG+ Sbjct: 61 PTEAPLRAVLESGEPIA-------------DLGAFLRSCACTFPLLHGPYGEDGTIQGLF 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDA--GLNIAPFI----TLTRANRHNISFAEV 174 V ++P+VGS VLAS+ CMDK KR + A + + P I L R Sbjct: 108 EVFDVPYVGSGVLASSLCMDKVAFKRYVAAAPNDIPVTPGISVDLVLEGRERVFERAHAA 167 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 G PLFVKPANQGSSVGVS+ A+DLA +D +V++E+G+ REIE AV Sbjct: 168 AEAHGFPLFVKPANQGSSVGVSRADDLASLDAALDLALRYDAQVVIEKGLDAREIELAVF 227 Query: 235 GNDNP--QASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 G+ P S GEI+ ++Y Y+TKY+D D A +P + +++ +A++A++ Sbjct: 228 GDGGPDTVVSPPGEIILPKGEWYTYETKYVD-DVASYAIPVELPAATTARLQELALRAFR 286 Query: 292 TLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 C+G+ARVD + ++ E +NE+NTLPGFT+ISMYPKL +G+ YT+LI++L++L Sbjct: 287 ATRCSGLARVDFLVERDSLEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTELISKLVDLG 346 Query: 351 LERHAADNALKTT 363 L + L TT Sbjct: 347 LAAYEQRRGLSTT 359 >UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R862_9FIRM Length = 392 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 119/371 (32%), Positives = 207/371 (55%), Gaps = 13/371 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 +++V + FGG+S EHE+S+ SA ++ A++ +++V+ L I K G+ + L + Sbjct: 14 RIKVVVAFGGESVEHEISILSAHQVMQAMNPMKYEVIPLYIAKDGRLLYHPLNTELERFE 73 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + SL + + + + D++FPI+HGT GEDG+ QG L Sbjct: 74 NLDKVEREGYEVSLQRRGNRFYMCPNKYSFLRKEISFDMVFPILHGTHGEDGTFQGYLST 133 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 ++P++G VL A DK + K++L D+GL +AP+ T + +F +LG PL Sbjct: 134 LHIPYIGCSVLGGAIGQDKIIMKQILEDSGLPVAPWFYWTLLKPLDDTFFRKAERLGYPL 193 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNP-Q 240 VKPAN GSS+GV+KV +E + A+ A+++D +V++E+ I+ +EI CAVLG++ + Sbjct: 194 IVKPANLGSSIGVAKVENEVELHRAMIEAYQYDGRVVIEKAIEHVQEINCAVLGDEQTCE 253 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDG------AKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 AS E++ + D +Y KY+ +G + +PA I E+ +I+ +A + ++ L Sbjct: 254 ASVLEEVLSSKDILSYADKYVCGEGVKGIVNTRRCIPARIDEELALEIQTLAKECFRCLC 313 Query: 295 CAGMARVDVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +G R+D E + + INEINT+PG S+ LW+ S L + LI RL+++A +R Sbjct: 314 ASGTGRIDFLYNRETKDLYINEINTIPG----SLAFYLWEKSNLPFPKLIDRLVQIAKKR 369 Query: 354 HAADNALKTTM 364 +A + + Sbjct: 370 YAQEQKRVYSY 380 >UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteria RepID=DDL_SYNJB Length = 325 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 177/351 (50%), Gaps = 47/351 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + + ++ GG+SAE +VS + K A++ V ++ D+ Sbjct: 1 MNIVVLAGGRSAERQVSWVTGKACKRALEDLGHRVKVIDPDED----------------- 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L + D ++ +HG GEDG +QGML Sbjct: 44 -----------------------LPLRLWQERQAGCDFVWIALHGPGGEDGVVQGMLDWL 80 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 LP+ GS LASA MDK V+K++ R AG+ + +++ +++A+ ++LG PL Sbjct: 81 GLPYQGSGPLASALAMDKLVSKQIFRAAGIPTPDWQVWD--DQNPLTWADCAAELGSPLV 138 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP+N GS+VG+S V E +A ++LA ++ +E+ + G+EI ++L Q Sbjct: 139 IKPSNNGSTVGISIVRDERSFAQGLELARSVSSRIFLERYVPGKEITLSILS---GQVLP 195 Query: 244 CGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ DFY Y+ KY G++ ++P +++P + A ++AYQ LGC G+ARVD Sbjct: 196 AIEIIPAQGDFYDYEAKY-APGGSRHLIPCSLSPAGLARCEAAGLKAYQALGCEGLARVD 254 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + PE + E+NTLPG T S+ P A G +T+L+ R+++ AL++ Sbjct: 255 LRVDPEENPWVLEVNTLPGMTPTSLCPDAAAALGWTFTELVERMLQDALQK 305 >UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWG2_9CLOT Length = 342 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 138/337 (40%), Positives = 206/337 (61%), Gaps = 7/337 (2%) Query: 22 QSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG 81 SA ++ AIDKSR++V +GI K G W + L+ L Sbjct: 1 MSATTVLRAIDKSRYEVTPVGIKKDGSWWLYPGDIGLILDGRWE-SCPDNLPAFLVPDAS 59 Query: 82 KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDK 141 + D+ + + +D + P +HG GEDG++QG+L++A +PFVG D+ +SAACMDK Sbjct: 60 VGGLLIRDSDHSDTVKKIDCVIPALHGKNGEDGTIQGLLQLAGIPFVGCDMTSSAACMDK 119 Query: 142 DVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLG-LPLFVKPANQGSSVGVSK 197 +T +L AG+ A F L + + ++E LG P+FVKPAN GSSVGVSK Sbjct: 120 VITNVMLEQAGIPQARFTWLYAYEFQSAPDEAVLKIEKDLGSYPVFVKPANAGSSVGVSK 179 Query: 198 VTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-PQASTCGEIVLTSDFYAY 256 + E+ A+ A + D K+++E+ I G+E+ECAVLGN++ AST GEI +++FY Y Sbjct: 180 AENREELRAAIAKAAKEDGKILIEENIVGQEVECAVLGNEDDLLASTVGEIAPSNEFYDY 239 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 + KY+ + + +PA + + + IR+ A +AYQ LGC+G+ARVD F+ +EV++NE+ Sbjct: 240 EAKYLS-GTSGLYIPAHLESGVIETIRSTAQKAYQVLGCSGLARVDFFVRNGSEVLLNEL 298 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 NTLPGFT+ISMYPKL + GL +LI RLI+LA++R Sbjct: 299 NTLPGFTSISMYPKLMEHEGLSNQELIHRLIQLAVKR 335 >UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacterium RepID=DDL_CORJK Length = 373 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 144/370 (38%), Positives = 208/370 (56%), Gaps = 24/370 (6%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 + V +++GG+S EH VS SA ++D +D ++VV +GI + G W L A Sbjct: 9 ARTTVAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWVPGTTDTSRLRA 68 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQ-------------LIDAQNGQPLPTVDVIFPIVHG 108 D + + G + Q G+ VDV+FP++HG Sbjct: 69 DGRDMPRVEDGGVHVQLTFGGAGTAGSAGSGAAGEMRYVTGPQAGEVFAQVDVVFPVLHG 128 Query: 109 TLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN 168 GEDG++QG+L +A + +VG+ VLASAA MDKD TKRL R+AG+ + + L + Sbjct: 129 VNGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGEELILF---QPR 185 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGRE 228 AE + +LGLP+FVKPA GSS+G+SKV S E++ A+DLAF D+KVIVE I G E Sbjct: 186 ELTAEEKERLGLPVFVKPARGGSSIGISKVDSWEEFDAAIDLAFSNDNKVIVEAMIHGAE 245 Query: 229 IECAVLGNDNPQASTCGEIVLTS------DFYAYDTKYIDEDGAKVVVPAAIAPEINDKI 282 +EC VL + + + +L FY +D KY+D + +PA + E +I Sbjct: 246 VECGVLQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSA-TIPAPLPAETIKEI 304 Query: 283 RAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 R +A++ + LGC G+ARVD F T V+NEINT+PGFT ISMYPK++ A G+ + DL Sbjct: 305 RQLAIRTFNALGCDGIARVDFFATENG-PVLNEINTMPGFTPISMYPKMFAAEGVSFGDL 363 Query: 343 ITRLIELALE 352 ++ LI AL Sbjct: 364 VSALIARALA 373 >UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacillales RepID=DDL_LEUMM Length = 377 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 214/371 (57%), Gaps = 13/371 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T A P H L A D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHALKSA------GDFDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLTS-----DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKTTM 364 A + L + Sbjct: 355 FAQNKKLSYSF 365 >UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaerobacteraceae RepID=DDL_THETN Length = 389 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 203/377 (53%), Gaps = 20/377 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L+V ++FGGKS EHEVS+ + +++ ++K +++ + + + + G+W+ + N D Sbjct: 2 LKVAVMFGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKGLLDISNYKD 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP-----TVDVIFPIVHGTLGEDGSLQG 118 + + L VPG ++ + VDVIFP HGT GEDG++QG Sbjct: 62 IPSLLKKCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQG 121 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVE 175 + ++AN+P+VGS V+ SA MDK + K + + L I ++ R +E Sbjct: 122 LFQLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIE 181 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECAVL 234 SKL P+FVKPAN GSS+G+SK + ++ A+++A +D K+IVE+ + E+ C+V+ Sbjct: 182 SKLKYPMFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDRKIIVEEAVKDPMEVNCSVM 241 Query: 235 G-NDNPQASTCGEIVLTSDFYAYDTKYID-----EDGAKVVVPAAIAPEINDKIRAIAVQ 288 G + + + S C V +F +Y KY+ + +PA I E +I+ +A + Sbjct: 242 GIDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKK 301 Query: 289 AYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 +Q L C+G+AR+D L E +V +NEINT+PG S LW+ G+ + LI RLI Sbjct: 302 VFQILDCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLI 357 Query: 348 ELALERHAADNALKTTM 364 E A+ERH T Sbjct: 358 EYAVERHKEYARNMYTF 374 >UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria RepID=DDLA_PSEAE Length = 346 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 111/359 (30%), Positives = 177/359 (49%), Gaps = 20/359 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL+V ++FGG S E +VS+ S ++ A+ + V+ + G + L + Sbjct: 4 DKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVD-TASGLLGAEEERRLLASK 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 A + + L VDV F +HG GEDG+LQ +L Sbjct: 63 VKEVPPDSDSLAIIRS--------GKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLD 114 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + GS LASA MDKDV KRL AG+ A ++ + EV +LG P Sbjct: 115 AGGFAYTGSGHLASAMAMDKDVAKRLFLAAGVETASWLMAPASEE------EVREQLGFP 168 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP +QGS+VG+S V S+ + A++LA + +V++E+ + GRE+ VL + QA Sbjct: 169 LVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLDD---QA 225 Query: 242 STCGEIVLTS-DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 GEI+L + + Y+ KY + V PA + P I + + +A++ ++ L +G +R Sbjct: 226 LPVGEILLGGQEVFDYEHKYQ-AGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSR 284 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 D L + + E+NTLPG T S+ P+ A+G+G+ +L R+ L +ER Sbjct: 285 TDFRLDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIERCKGARK 343 >UniRef50_B0MP08 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MP08_9FIRM Length = 397 Score = 343 bits (880), Expect = 7e-93, Method: Composition-based stats. Identities = 131/379 (34%), Positives = 207/379 (54%), Gaps = 21/379 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+RVG+ FGGKS EHEVS+ SA ++I+K +++V+ + I K + +V + + + Sbjct: 2 KIRVGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASYR 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQN--GQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + L GK + L + T+DV FPIVHGT EDG QG L Sbjct: 62 NLKSLLKESRRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGYL 121 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESK 177 + +P+VG DV++SA MDK V K + +D G+ + + ++ + A++++K Sbjct: 122 QTIGVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAK 181 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 + PL VKP N GSSVG+ ++EQ A+D AF + K++VE I +EI C+V G+ Sbjct: 182 IAYPLIVKPINLGSSVGIMIAHNDEQLDEALDNAFTYASKLLVEPAITNLKEINCSVCGD 241 Query: 237 -DNPQASTCGEIVLTSDFYAYDTKYIDEDG---------AKVVVPAAIAPEINDKIRAIA 286 AS C E V T + +Y KYI D K +PA I+ E ++IR +A Sbjct: 242 YATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTLA 301 Query: 287 VQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 V+A+++LG +G +R+D + V +NEINT+PG S+ LW+ G+ Y++L+ Sbjct: 302 VKAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDE 357 Query: 346 LIELALERHAADNALKTTM 364 +I LAL+R + AL + Sbjct: 358 MISLALKRERENKALTFSF 376 >UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes RepID=A9KQG5_CLOPH Length = 340 Score = 343 bits (880), Expect = 8e-93, Method: Composition-based stats. Identities = 102/347 (29%), Positives = 171/347 (49%), Gaps = 12/347 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS-DASNYLLNAD 62 ++V ++ GG S E EVSL S I +A+ + ++V+LL + + + D+ + Sbjct: 1 MKVVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDLYLGIKDVTNIDSLFRKMEDQ 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQ--LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +P + +L ++ + LI D +F +HG++GE+G LQ M Sbjct: 61 NPYQYQVPKEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSIGENGQLQAMF 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + + GS + S MDK ++K +++ G+ +I E+E L L Sbjct: 121 DIYGISYTGSGYIGSLLAMDKGLSKVIMQKHGIETPDYIVADLTEE-----QELEKTLML 175 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P +KP + GSSVGVS V S+E+ A+D A ++++KV++E+ I GRE +L N Sbjct: 176 PCVIKPLSCGSSVGVSIVRSQEELGKALDYAKKYENKVLIEELIVGREFSVGIL---NHH 232 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EI+ + FY Y KY A V PA + EI+ K++ A++ ++ L +R Sbjct: 233 ALPLIEIIPKTGFYDYTNKYQ-AGMATEVCPAQLEDEISIKMQEAALKVHEVLQLGFYSR 291 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 VD L + E NTLPG T S+ P+ A G+ Y+ L ++ Sbjct: 292 VDFLLKEDGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKLCELIL 338 >UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified Erysipelotrichaceae RepID=Q6JH79_CLOIN Length = 355 Score = 342 bits (879), Expect = 9e-93, Method: Composition-based stats. Identities = 127/356 (35%), Positives = 209/356 (58%), Gaps = 6/356 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEK+++ I+ GGKS E+ VSL SA +++ I+K ++++ +GI K G+W+ + Sbjct: 1 MEKIKLAIILGGKSDEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYSGDVDGIE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D + L+ G + A VD IFPI+HG GEDG++Q + Sbjct: 61 HDTWL-CEAHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQTLF 119 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN--ISFAEVESKL 178 ++ +P+VG + A CMDK++ ++ AG++ APF+ + A+ + + + L Sbjct: 120 ELSGIPYVGCGHMRFAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAKETL 179 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHK--VIVEQGIKGREIECAVLGN 236 GLP+F+KPAN GSS G+ ++ S + + A+ AF D K VI+E I+G EI AV+GN Sbjct: 180 GLPIFIKPANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGN 239 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A + EI + F+ Y+ KY D PA I+P++ ++ R IA +AY+ + C Sbjct: 240 KELFAGSVDEIETAAPFFDYEGKYEMVDSHIY-CPARISPKLFEEAREIAKKAYRAMNCK 298 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 GM RVD+F+TPE+ +++NE+NT+PGFT+ S YP + + +G+ + +LI +L+ LA+E Sbjct: 299 GMTRVDMFVTPEDTIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALAME 354 >UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=5 Tax=Aquificales RepID=C0QUP4_PERMH Length = 303 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 111/351 (31%), Positives = 178/351 (50%), Gaps = 52/351 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL++ +++GG S+E E+S++S K + +A+ K F + +G+ + ++Y Sbjct: 1 MNKLKIALLYGGSSSEREISIKSGKAVENALKKLGFQYSVFDP-AEGKDFIKKITDY--- 56 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D+ F +HG +GEDG++QG+L Sbjct: 57 -------------------------------------NPDLAFIALHGKIGEDGTIQGVL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + GSD+ SA CMDK +TK +L+ G+ + T+ ++ N +LG Sbjct: 80 EFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVPEGYTIQNLDQINDL------RLGY 133 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP ++GSS+GV V +E+Q AV + D KVI+E+ IKGREI +L N + Sbjct: 134 PVVVKPNSEGSSIGVKIVENEDQLGKAVGEILKIDSKVIIERFIKGREITVGIL---NGE 190 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI + FY Y KYI ++ + + PA I + KI+ A++ Y LGC G+AR Sbjct: 191 PLDIIEIKVKEGFYDYYNKYISQE-TEYICPAEIESSLYRKIQNTALKIYNILGCKGVAR 249 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 VD L + + E+NT+PG T+ S+ PK G+ + LI ++IE AL Sbjct: 250 VDFILDKD-KPYFLEVNTIPGLTDHSLIPKAAAVKGINFESLILKIIEGAL 299 >UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B158 Length = 342 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 198/363 (54%), Gaps = 34/363 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +V GG+S EH VS S NI DKS++D+ + GI K+G+W+ ++++ ++ Sbjct: 1 MKLLLVCGGQSTEHAVSRMSCVNIYKNADKSKYDIKIAGITKEGEWYDLVSTDFSSDSWL 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + T L + DV+FP++HG GEDG++QG+L +A Sbjct: 61 EGATKITDHFTFL--------------------KSFDVVFPVLHGQFGEDGTIQGLLEMA 100 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA----------- 172 +P+VG V+AS MDK K+L A + P + + + + Sbjct: 101 QVPYVGCRVMASCTAMDKIYAKKLFDQAHIPQVPSLYVKKRYDDKLVVVDDEGRESFNVE 160 Query: 173 -EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 E+ + LG P FVK + GSSVG KV S + + A +D V+VE+ I E+EC Sbjct: 161 MEIYTHLGFPCFVKASRSGSSVGCYKVNSLTELLPRLHEAATYDRHVVVEKAINATELEC 220 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 AV+GND+ AS G+I+ +FY Y++KY DE A +PA + I D IR AV+A++ Sbjct: 221 AVIGNDDISASRVGQILPHGEFYTYESKYEDEQSAT-CIPARVDQSIQDYIRQAAVKAFK 279 Query: 292 TLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + G+AR D F + V +NEINT+PGFTNISMYP+L + +GL LI LI+LA Sbjct: 280 AVDGTGLARCDFFYDNDTGNVYLNEINTMPGFTNISMYPQLMKDAGLDTPALIDELIKLA 339 Query: 351 LER 353 L+R Sbjct: 340 LQR 342 >UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXB8_DESAC Length = 305 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 171/353 (48%), Gaps = 52/353 (14%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++ R+G++ GG SAE EVSL++ IV A+++ + VV + DK Sbjct: 4 KQQRIGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADK---------------- 47 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 +DV+F VHG GEDG++QGML Sbjct: 48 ---------------------------TLPAQLIEKQIDVVFLAVHGRFGEDGTIQGMLE 80 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P+ GS VLASA +DK VTKR++ G+ + + + A+ P Sbjct: 81 LMQIPYTGSGVLASALAIDKAVTKRMVAQDGVTTPAATLVDVNSDVDDIVAQCGH---FP 137 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 VKP +GS++G++ + ++ A+ A ++D +V+VE I GRE+ +V+ N +A Sbjct: 138 QVVKPVREGSTLGIAIANNADELKQAIAQARDYDRRVLVEDYIDGREVTVSVM---NGRA 194 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + EIV S FY Y KY + +VPA + I+ AV +Y +LGC G ARV Sbjct: 195 LSIIEIVPESGFYDYTAKYTV-GKTRYLVPAPLPESQYKAIQQAAVASYASLGCRGAARV 253 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA-LER 353 D +T +N E+NT+PG T S+ PK G+ + L+ +++ A L+R Sbjct: 254 DFMVTDDN-FYFLEVNTIPGMTETSLLPKAAADCGMDFAKLVEGILDDASLDR 305 >UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW8_CRYCD Length = 313 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 116/353 (32%), Positives = 177/353 (50%), Gaps = 46/353 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++++V ++ GG S E E+SL S + DA+ ++ F V +L K Sbjct: 6 QQMKVALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAK---------------- 49 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D DV F +HG GEDG++QG L Sbjct: 50 --------------------------KDDLAQLVSQPFDVAFLCLHGRGGEDGAIQGFLE 83 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 LP++G + +SA MDK K R+ G+ ITL R ++ A V ++LG Sbjct: 84 TIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHRNE--SVDAATVIAQLGNH 141 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKPA +GS++GVS + A+ AF+ D+ V++E + G E+ AV+GN+N A Sbjct: 142 LVVKPATEGSALGVSIIEGPSALDRALTEAFKLDNAVLIETFMAGTELTVAVIGNENASA 201 Query: 242 STCGEIVLT-SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EIV +FY +++KY DG++ + PA + E ++ +AVQA++ LGC G++R Sbjct: 202 LPVIEIVPQLGEFYDFESKY-AADGSQHICPARLTDEQTTAVQQVAVQAHKALGCCGVSR 260 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 DV L + + E NT+PG T S+ P +A+G+ + L TRLIELALER Sbjct: 261 SDVILAADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQLCTRLIELALER 313 >UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=DDL_BIFA0 Length = 378 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 144/378 (38%), Positives = 207/378 (54%), Gaps = 26/378 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K RV +++GGK+ EH +S SA + + A+D F+ V +GI K G W V N Sbjct: 1 MAKTRVAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ----PLPTVDVIFPIVHGTLGEDGSL 116 + A+ + + A+N L +DV+ P +HG GEDG++ Sbjct: 61 LAEGLPEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTI 120 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV-- 174 QG+ + +P+VG VLASAACMDK TK LLR AG+ +AP ITL + Sbjct: 121 QGLFEMMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDG 180 Query: 175 --------ESKLGLPLFVKPANQGSSVGVSKVT---SEEQYAIAVDLAFEFDHKVIVEQG 223 E+ L PLFVKP+ GSS GV+KV A AV A D +V+VEQG Sbjct: 181 EEFLRQVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQG 240 Query: 224 IKGREIECAVLG---NDNPQASTCGEIVLT------SDFYAYDTKYIDEDGAKVVVPAAI 274 I REIECAV+ D +A+ GE+VL FY +D+KY+D + +PA I Sbjct: 241 IDAREIECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKI 300 Query: 275 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA 334 ++ ++R AV+A+ + G++RVD F+T + +V++NEINTLPG T+ISM+P+ W+A Sbjct: 301 GDDLIARVRETAVRAFDAVDGMGLSRVDTFVTADGDVLVNEINTLPGCTSISMFPQAWEA 360 Query: 335 SGLGYTDLITRLIELALE 352 G+ + ++T LIE AL Sbjct: 361 MGIPFRTVVTDLIEGALA 378 >UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes RepID=D2LR31_BACS4 Length = 404 Score = 340 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 128/382 (33%), Positives = 210/382 (54%), Gaps = 24/382 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV ++FGG S EHEVS+ SA + +D+SR++++ + I K+G W+ D + Sbjct: 9 RTRVAVIFGGMSVEHEVSVISALQAIQNMDESRYEIIPVYISKEGAWYTGDTLLDIEEYK 68 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNG---QPLPTVDVIFPIVHGTLGEDGSLQGM 119 + + + L + + + + +DV FPIVHGT EDG LQG Sbjct: 69 NLKGLLAKSQRIQLLREGDNRVIINKEPKPKFGKAYINEIDVAFPIVHGTFAEDGVLQGY 128 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVES 176 L + LP+VG DV++S+ MDK + K + RD+GL I ++ + +VE Sbjct: 129 LELLGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYVWFYSTKWNEDQDELVKKVEG 188 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLG 235 KL P+ VKPAN GSSVG+SK + ++ AV+LA +F +K+++E+ ++ EI C+VLG Sbjct: 189 KLQYPVIVKPANLGSSVGISKAANVDELEEAVELASQFANKIVIEKMVQNMTEINCSVLG 248 Query: 236 N-DNPQASTCGEIVLTSDFYAYDTKYIDE-----------DGAKVVVPAAIAPEINDKIR 283 + + +AS C +++ + +Y+ KY + ++PA I+ E +I+ Sbjct: 249 DYEAAEASVCEQVLGNDEILSYEDKYAGGGSKGGGASKGMESTNRIIPADISEEKTKEIQ 308 Query: 284 AIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 +AV A+Q LGC+G++R+D + + N V INEINT+PG S+ LW+ +G Y +L Sbjct: 309 ELAVAAFQVLGCSGVSRIDFLIDNDTNNVFINEINTIPG----SLSFYLWEPTGKPYKEL 364 Query: 343 ITRLIELALERHAADNALKTTM 364 LI+LAL+R L ++ Sbjct: 365 TNDLIQLALKRTREREQLMFSI 386 >UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostocaceae RepID=DDL_OENOB Length = 377 Score = 339 bits (870), Expect = 9e-92, Method: Composition-based stats. Identities = 124/369 (33%), Positives = 208/369 (56%), Gaps = 15/369 (4%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK+RVG+ FGG S+EH+VS +SAKN DA+D ++ + + I K+G +++ Sbjct: 3 EKIRVGLFFGGNSSEHDVSKRSAKNYYDALDPEKYQIFPVLISKKGIM---------IDS 53 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + L + + +DV+FP VHG LGEDG+L G+ R Sbjct: 54 ETSKRVLFGEDEDELLAGLPNKNADIFGPIDSIRNLKLDVLFPSVHGNLGEDGTLAGLFR 113 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + N+P+VGS + A A DK +TK L+ G+ +I + + +++ + V +LG Sbjct: 114 LMNIPYVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKPDWDSVSKQLGEV 173 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQ 240 +FVK ANQGSSVGVS+VT+ E+Y A+ +F++D K++VE+ ++ E+E +LGND Sbjct: 174 VFVKAANQGSSVGVSRVTNAEEYENALRDSFQYDEKLLVEKAVESPTELEIGLLGNDRVI 233 Query: 241 ASTCGEIVLTS-----DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 S G ++ Y K++D K +PA I+P + ++ +AV+AY+ LG Sbjct: 234 TSPIGAHWAPGQDHGSGWFDYKNKFVDNSKMKYQIPAKISPAKSKELENMAVKAYKVLGI 293 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 G AR+D ++ + E+ ++E NTLPG TN+S++P L++A+G+ + +LI+LA E Sbjct: 294 KGFARIDFLMSKDGEIFLSEPNTLPGNTNMSLFPILFEAAGMNRSQQAEKLIQLAFEEFK 353 Query: 356 ADNALKTTM 364 + + + Sbjct: 354 REQNISYSF 362 >UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacteria RepID=DDL_YERP3 Length = 306 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 110/349 (31%), Positives = 169/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ + ++ D + K Sbjct: 4 KVAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVD-TKD------------------ 44 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 D +F +HG GEDG+LQG+L Sbjct: 45 ------------------------FPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQ 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES---KLGLP 181 LP+ GS V+ASA MDK TK + + GL I+P++ L R +S E+ + KLGLP Sbjct: 81 LPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFETLSPEELVACVAKLGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+++GSSVG+SKV + A+ AF+ D V++E+ + G E A+LG++ Sbjct: 141 LIVKPSHEGSSVGMSKVDHASELQKALVEAFQHDSDVLIEKWLSGPEFTVAILGDE---V 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY YD KY+ D + P+ ++ E ++ A+A+QAY L C+G RV Sbjct: 198 LPSIRIQPPGVFYDYDAKYLS-DKTQYFCPSGLSDESEQQLAALALQAYHALDCSGWGRV 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV + + E+NT PG T+ S+ P + GL ++ L+ R++ LA Sbjct: 257 DVMQDRDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILMLA 305 >UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C8F Length = 358 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 98/349 (28%), Positives = 159/349 (45%), Gaps = 15/349 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG S E EVSL S I +A+ + +V L G + Sbjct: 18 MKIIVLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWP-GIREGEEVRYRTREEGY 76 Query: 64 PAHIALRPSATSLAQVPGKHEHQ--LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + A L ++ H + LI + D++F +HG GEDG +Q +L Sbjct: 77 HFSSEIGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQIQAVLE 136 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 +P GS MDK+++K +R AG+ + + F LP Sbjct: 137 AYGIPHTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLAEKGKTSRPDF--------LP 188 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 VKP + GSSVGV+ V EE+++ A++ AF +V+VE+ I GRE VLG+ +A Sbjct: 189 CVVKPLDCGSSVGVTIVEREEEWSAALEAAFSHGGRVLVEKKITGREFSVGVLGD---RA 245 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI+ S FY Y KY + + PA I K++ A+ ++ L +RV Sbjct: 246 LPAIEIIPESGFYDYQNKYQ-PGMTREICPAWIDGMQEVKMKETALTVHRILELGYYSRV 304 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 D + + + E NTLPG T +S+ P+ +A+G+ Y +L ++ Sbjct: 305 DFMMDEDGAIYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIVNNG 353 >UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJ24_FIBSS Length = 344 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 175/353 (49%), Gaps = 13/353 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +LRV ++ GG S EH+VS+ S +V A+D ++++ + IDK G WH + Sbjct: 1 MSRLRVLVLMGGPSTEHDVSVVSGTGVVRAMDPEKYNIHPVLIDKDGTWH--------WS 52 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + + + + + LP+ D+ F +HG GEDG +Q ML Sbjct: 53 SRELSPYQKANFSENYFHSLEGTAANKKKSPALSELPSADIAFLALHGKWGEDGHIQAML 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 N+P+ G +LASA MDK +K + R G+ P+ + + + + V +LG Sbjct: 113 ENWNIPYTGCGLLASALAMDKIKSKEIYRANGIPTPPYRVIWKHDFTGDTLVSVADELGY 172 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PL +K GSS+G+ + ++ F+ ++++ E+ I G E C + + P Sbjct: 173 PLVIKDPLGGSSIGIGIAKNLDEAGKIAQDLFKDSNRLLCEKFIAGGEASCGYIEGEKP- 231 Query: 241 ASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 E+ + T +++ ++ KY + V PA APE+ +I+ + A+ LG AG + Sbjct: 232 -LPPTEMRMTTREYFDFEAKY--NGECQEVTPAEFAPELTARIQELVKNAHYALGGAGYS 288 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R DV +T + E+ E NTLPG T S+ P+ G+ Y+ LI +I+ +LE Sbjct: 289 RTDVRITKDGELFAIETNTLPGMTPTSLLPQQAACVGITYSQLIDLIIDKSLE 341 >UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AVY8_9BACE Length = 398 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 207/378 (54%), Gaps = 20/378 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV ++FGGKS EHEVS+ S ++D ++DV+ + + K + ++ D+ + + Sbjct: 7 KTRVAMMFGGKSVEHEVSVISGIQAYMSMDTDKYDVIPVYMTKNNEMYIGDSIGDIESYK 66 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQP--LPTVDVIFPIVHGTLGEDGSLQGML 120 + + + + G+ + + +DV FP+VHGT EDG QG L Sbjct: 67 NIDELLKKSQRVIMINEDGRVKLVQYPVKKLGKNVEVGIDVAFPVVHGTNVEDGGFQGYL 126 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNI--APFITLTRANRHNISFAEVESKL 178 + +PFVG DV ASA MDK +TK +L+++ + + A TL+ ++E+ Sbjct: 127 KTMGIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDARLYTLSDYADMESMMNDIENVF 186 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 G P+ VKP N GSSVG+S S + A +VD AF + KV+VE I REI C+VLG++ Sbjct: 187 GYPVIVKPVNLGSSVGISVAKSRVELANSVDDAFRYATKVLVEHAITNLREINCSVLGDE 246 Query: 238 N-PQASTCGEIVLTSDFYAYDTKYIDEDG---------AKVVVPAAIAPEINDKIRAIAV 287 N AS C E + T D +Y+ KY+ +PA + PE +++R +AV Sbjct: 247 NDAIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMASVSRRIPAELTPEKREEVRELAV 306 Query: 288 QAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 ++++ LGC G++R+D + + +++ NEINT+PG S+ LW+ G+ Y +L+ R+ Sbjct: 307 RSFKALGCNGVSRIDFMIDADTDKLYFNEINTIPG----SLAFYLWEPVGVPYKELLDRM 362 Query: 347 IELALERHAADNALKTTM 364 I+LAL+R + +L T Sbjct: 363 IQLALKRERTEESLTFTF 380 >UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho melanesiensis BI429 RepID=DDL_THEM4 Length = 361 Score = 337 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 121/362 (33%), Positives = 190/362 (52%), Gaps = 14/362 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L +GI FG KS EHE+S+ +A+ ++ +ID+ +++V+ + I K G+W L D Sbjct: 2 LNIGIFFGSKSVEHEISIITAQQVLSSIDRKKYNVIPIYISKSGEWFTGKVLEDLETFKD 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + V + G T+D F + HGT GEDG+ QGM + Sbjct: 62 FDKLEKKAKKIDSFSVKNNKLLL----KYGLKKQTIDFCFLVFHGTNGEDGTFQGMCEIF 117 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ G + +SA MDK VTK LL++ +++ F T + F E LG P+ Sbjct: 118 GIPYSGCNHFSSAFTMDKVVTKLLLKEKEISVVDFEYTT--EINEEFFKRCEKNLGYPMI 175 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKPA GSS+GVSKV + + AV FD+KV+VE+ I REI CAV+G N S Sbjct: 176 VKPARLGSSIGVSKVVDRKNFEEAVKNVLLFDNKVLVEKWINAREINCAVMGYKNIFVSE 235 Query: 244 CGEIVLTSDFYAYDTKYIDEDG--AKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI +DF+ ++ KY + + ++PA I + +KI+ IA ++ L C+G R+ Sbjct: 236 LEEINKKNDFFNFEEKYFKKGKKFSNHIIPARIDENLKNKIKEIAKDTFKILECSGNVRI 295 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 D + +++ +NEINT+PG +S Y +WQ SG ++ +I +I + LER + Sbjct: 296 DFLI--ADKIYVNEINTIPG--ALSFY--IWQKSGFTFSQIIDNMINMGLERFKDKKIVS 349 Query: 362 TT 363 Sbjct: 350 ID 351 >UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobacillus RepID=B5ELC0_ACIF5 Length = 308 Score = 337 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 98/349 (28%), Positives = 162/349 (46%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R+ +++GG S E EVSL S ++ + D V + I Sbjct: 6 RIAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAVGVDI--------------------- 44 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 Q Q + F + HG +GEDG LQ L + Sbjct: 45 ---------------------QPAILQQQMAESGAQIAFNVCHGAVGEDGLLQACLETLD 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK K+L R AGL + I L R + ++ ++ G PL++ Sbjct: 84 MPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILLHRGSHTP----DLGARFGWPLYI 139 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP + GSS+GVSKV + A+ AF + +V+ E + G E+ +L + QA Sbjct: 140 KPNHGGSSLGVSKVGGPAELDAALQCAFAIEDEVLCEGAVIGHEVTVGIL---DGQALPP 196 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I FY Y KY+ +D + ++P+ + + +++A+A++A+ LGC RVD Sbjct: 197 IVIETPRAFYDYTAKYLADD-TRYLLPSGLGAPLEQQLQALALRAFAELGCRDWGRVDFM 255 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + E+N++PG T+ S+ P +A+G+G+ +L ++ A R Sbjct: 256 IGGDGRPHLLEVNSVPGMTSHSLIPMAAKATGMGFPELCATILRTAQRR 304 >UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria RepID=DDL_HAMD5 Length = 320 Score = 337 bits (864), Expect = 6e-91, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 166/363 (45%), Gaps = 64/363 (17%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S+E ++SLQS +V + ++ D + Sbjct: 4 KVAVLLGGTSSERQISLQSGHAVVAGLREAGIDARPID---------------------- 41 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 F +HG GEDG LQ +L Sbjct: 42 ---------------------TKNFLVTELKEKGFTKAFIALHGRDGEDGHLQAVLEFLK 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA-----------------NRH 167 +P+ GS V+ASA MDK +K + + AGL ++P++ L R NR Sbjct: 81 IPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNREQIWPNVTQNTSNDLLLNNRI 140 Query: 168 NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGR 227 + + ++LGLPL VKP+ +GSS G++KV +Q A+ A+ +D +++VE+ G Sbjct: 141 SNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQLDDALKKAWHYDEEILVEKWHFGT 200 Query: 228 EIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAV 287 E+ A+LG+ I ++ FY Y KY+ D + P+ + E ++ +++ Sbjct: 201 ELTVAILGD---TVLPSIRIQVSDIFYDYQAKYVS-DKTQYFCPSGLKQEQEKQLATLSM 256 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 AY+ LGC G RVDV L E + EINT PG T+ S++P + +G +++L+ +++ Sbjct: 257 NAYRALGCDGWGRVDVMLDDEGHFYLMEINTAPGMTDHSLFPMAARQAGFSFSELVCKIL 316 Query: 348 ELA 350 LA Sbjct: 317 SLA 319 >UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=DDL_WIGBR Length = 350 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 149/347 (42%), Positives = 229/347 (65%), Gaps = 4/347 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K V ++FGG+S EHE+SLQS+ +I++AIDK +++++L+G++K G+ + +NY+L Sbjct: 1 MKKT-VAVLFGGESKEHEISLQSSISIINAIDKKKYNIILIGVEKNGKIGIRSINNYILF 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + +I L P+ + L +PGK+ +Q +N + L +DVIF I+HG+ GE+G+ QG+ Sbjct: 60 KYNINYIKLAPAVSYLYIIPGKNNYQFYSLKNKKML-KIDVIFSILHGSNGENGAFQGLF 118 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 PFVGS+VL+S+ CMDKD++KR+L G+++ P ITL + ++ + + Sbjct: 119 NTIYTPFVGSNVLSSSICMDKDISKRILSTFGISVVPSITLY-YENYKKKINKIINNIKF 177 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P +KP+NQGSS GV+ ++D+AF + K+++E I+GREIE VLGN N Sbjct: 178 PCCIKPSNQGSSFGVNVANDFISLKESIDVAFLYSKKILIEPFIQGREIEVGVLGNRNVI 237 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 +S CGEI FY Y KYI + K+++PA I+ EI++KI+ IA A+ +L C+ MAR Sbjct: 238 SSVCGEIKFKKIFYDYKEKYISK-KTKIIIPAKISNEISNKIKKIAKLAFISLECSIMAR 296 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 VD FLT ++ +NEINT+PGFT S+YPKLW SGL + LI +LI Sbjct: 297 VDFFLTKNKKIFLNEINTIPGFTKNSIYPKLWSKSGLDFKSLINKLI 343 >UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacterales RepID=DDL_DESPS Length = 322 Score = 336 bits (863), Expect = 7e-91, Method: Composition-based stats. Identities = 112/361 (31%), Positives = 174/361 (48%), Gaps = 48/361 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 E+LR+ ++ GG S E EVSL A + +DK ++ V Sbjct: 7 ERLRIALIAGGTSGEREVSLTGADGVERILDKEKYLVSRYDSATD--------------- 51 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + ++D F ++HG GEDG++QG L Sbjct: 52 ---------------------------LPRLAADAASIDFAFILLHGLHGEDGTIQGFLD 84 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P+ GS VL SA MDKD+ K +A L +A + T+ + E+ LGLP Sbjct: 85 LLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAAGDF--FYSEELIEDLGLP 142 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD-HKVIVEQGIKGREIECAVLGNDNPQ 240 L VKPA GSS+G+S +EE+ ++ A + ++VEQ IKGRE+ CAVLGND+ Q Sbjct: 143 LVVKPACAGSSIGISLAHTEEELLAGINHARDCSAGAIMVEQFIKGRELTCAVLGNDDLQ 202 Query: 241 ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A EIV F+ Y+ KY ++ + PA IA + ++++ A++A+Q L G Sbjct: 203 ALPVLEIVPGDKYAFFDYEAKYQ-PGASEEICPALIADALREQVQDHAIRAHQALRLRGY 261 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 +R D + ++ + E NT+PG T S+ P+ A+G+ + L+ LIEL LE+ Sbjct: 262 SRTDFIYGEDGKLYLLETNTIPGMTETSILPQEAAATGMDFPSLLDTLIELGLEKSKGKK 321 Query: 359 A 359 Sbjct: 322 G 322 >UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira biflexa serovar Patoc RepID=DDL_LEPBA Length = 349 Score = 336 bits (862), Expect = 9e-91, Method: Composition-based stats. Identities = 99/356 (27%), Positives = 166/356 (46%), Gaps = 13/356 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K+++ ++FGG S EH +S++S+ I ID+ ++DV + I+ G++ + S + Sbjct: 1 MSKIKIALLFGGISGEHIISVRSSAFIFATIDREKYDVCPVYINPNGKFWIPTVSEPIYP 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + A +Q G F +HG GEDG +QG L Sbjct: 61 DPSGKTEIEFLQEFNKANAIVSPSEPADISQMGFLS-----AFLGLHGGAGEDGRIQGFL 115 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P GS VLAS+ MDK L G+ +APF+ L + + Sbjct: 116 DTLGIPHTGSGVLASSLAMDKYRANILFEAMGIPVAPFLELEKGKTDPRKTL-LNLSFSY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG----- 235 P+F+KP GSSV + E+ VD F D +V+V++ + G E+ VL Sbjct: 175 PVFIKPTLGGSSVNTGMAKTAEEAMTLVDKIFVTDDRVLVQKLVSGTEVSIGVLEKPEGK 234 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 NP EI S+F+ ++ KY + ++ + PA + E+ ++ ++ ++ LGC Sbjct: 235 KRNPFPLVPTEIRPKSEFFDFEAKYT-KGASEEITPAPVGDEVTKTLQEYTLRCHEILGC 293 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G +R D + + + E NTLPG T S+ P+ +A G+ D+ T L+E++L Sbjct: 294 KGYSRTDFII-SDGVPYVLETNTLPGMTGTSLIPQQAKALGINMKDVFTWLLEISL 348 >UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W6_9ZZZZ Length = 343 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 166/348 (47%), Gaps = 15/348 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG S E +VSL S I +++ +S V L + + +SD + + + Sbjct: 5 MKITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDA--FTSDGN 62 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + A LI + D++F +HG +GEDGS+Q L Sbjct: 63 FMYTVPKEPPDLKALRAEVPGSALIGDGVLELCRLSDIVFLALHGGMGEDGSIQAALSSM 122 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GSD A MDK ++K L R G+ A F L + + + + LP Sbjct: 123 GIPYTGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKKGDSTD--------GIPLPCV 174 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP + GSSVGVS V ++E A A++ A++++ KV+ E I GRE VL +A Sbjct: 175 VKPCSCGSSVGVSIVDTKEALAGALETAYQYEEKVLAEDKICGREFSVGVL---LGRALP 231 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 EI FY Y+ KY + + PA + + A+A++ ++ LG +R+D Sbjct: 232 AIEIRPKDGFYDYERKYQS-GMTEEICPADLPEAEAASLGALALKVHRALGLGSYSRIDF 290 Query: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + + E NTLPG T +S+ P+ A+G+GY L + + A Sbjct: 291 IREEKTGKFICLEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338 >UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root RepID=B0NI26_EUBSP Length = 356 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGI------DKQGQWHVSDASNY 57 +++ ++ GG S E +VSL S I + + LL + D V D Sbjct: 1 MKIIVLAGGLSPERDVSLISGAGICRTLREKGHKAYLLDVFFGLPYDPDKLEEVFDLPGG 60 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 L + A P + D+ F +HG++GE+G LQ Sbjct: 61 GLEIAEGIKTTTPDLEALRASRP-DQSDCYLGPNVIDLCRIADITFMGLHGSVGENGKLQ 119 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 + + + G + A MDK V K++ + +G+ +L R + K Sbjct: 120 ATFDILGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGTSLNRNTKDTP-----LEK 174 Query: 178 LGL--PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAF--EFDHKVIVEQGIKGREIECAV 233 LG PL +KP + GSS+GV V +EE+Y A+ +F + +V++E IKGRE C++ Sbjct: 175 LGYYLPLVIKPCSGGSSIGVYIVHTEEEYREAIRCSFDVNHEDEVVIEPYIKGREYACSI 234 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + +A EI+ + Y+ KY D ++ P ++ + KI+ +A++ L Sbjct: 235 IA---GKALPLIEIIPKDGIFNYENKYQDGGAQELCPPVSLDDKTQAKIQRAGEKAFRVL 291 Query: 294 GCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 AR D + + + E+N LPG T S+ PK +A G+ Y DL +IE +++ Sbjct: 292 HMDVYARADFIVDETDGKFYCLEMNGLPGMTPASLIPKSARAIGVDYGDLCELIIEESMK 351 Query: 353 -RHA 355 R+ Sbjct: 352 TRYQ 355 >UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQQ8_9FIRM Length = 312 Score = 334 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 100/351 (28%), Positives = 171/351 (48%), Gaps = 44/351 (12%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M + ++ +V GG S E E+S Q+ I+ A+ ++ Sbjct: 1 MNQDKIVVVMGGPSTEAEISRQTGSAILKALQSKGYN----------------------- 37 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 E ++F +HG GEDG LQG L Sbjct: 38 -------------------AEGMELNPPTFAEDIKKSGCAIVFNALHGKFGEDGVLQGTL 78 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS VLA+A MDK +KR+ G++ T R AE++ L Sbjct: 79 DMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHTYYRYEMKRDLAAEIKQGFSL 138 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-P 239 P+ VK A+QGSS+GV V +++ A+ AF ++ +V+VE+ I+G+E+ AV GN+ Sbjct: 139 PVVVKAASQGSSIGVYIVETKDALEDALKEAFSYNDEVLVEEFIRGKELTVAVWGNEEKK 198 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +A EI TS Y Y++KY + + ++PA ++ E +I+ +A++ + GC G+A Sbjct: 199 EAFPIIEITTTSGRYDYESKYT-KGASTHIIPARVSAEKTKEIQDLAIKTFTACGCKGVA 257 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 RVD+ L+ + + E+N++PG T +S+ P +A G+ + +L R++E+A Sbjct: 258 RVDMMLSEDGTPYVIEVNSVPGMTELSLVPDAGRAMGVEFPELCERILEMA 308 >UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomonas putida RepID=DDLA_PSEPK Length = 352 Score = 334 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 142/362 (39%), Positives = 207/362 (57%), Gaps = 15/362 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M++ + +VFGG+S+EH V+L+SA I A+ V +GID++G W Sbjct: 1 MKQNVIALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPG 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 A D SA ++ PG ++G +D++FP +HG GEDG++QG+ Sbjct: 61 AVDR-------SAPLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLA 113 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + LP VGS VL SA MDKDVTKR+++ AGL + P++ + + E+ LG Sbjct: 114 AMCGLPCVGSGVLGSAMAMDKDVTKRMVQSAGLVVVPWLAMN----SMRPWEELVECLGS 169 Query: 181 P-LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 LFVKPA GSS+GVS+V++ +YA A +A D KV+VE + GREIEC VL + Sbjct: 170 STLFVKPATSGSSIGVSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEG 229 Query: 240 -QASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 AS GEI+ +Y Y KY + VP+ + P+I +I+A++VQA++ L Sbjct: 230 LMASVVGEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELK 289 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G ARVD FLT E E+++NEINTLPGFT+ SMYPK+++ SG L+ L+E L + Sbjct: 290 GYARVDFFLTEEGEIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLSSASK 349 Query: 357 DN 358 + Sbjct: 350 ER 351 >UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS09_SYNAS Length = 355 Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats. Identities = 118/361 (32%), Positives = 184/361 (50%), Gaps = 19/361 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KLRVGI+ G S+E EVSL+S +NI ID+ ++ + + +D + N Sbjct: 8 KLRVGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMDSDAALWEIPLKLLMRNCT 67 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 L A + + VD++F +HG GEDG +QG+L + Sbjct: 68 RDVEEDLAEEAVRVP--------------YEELKTRVDLVFLALHGKYGEDGCMQGLLEL 113 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA----NRHNISFAEVESKL 178 +P+ GS VLASA MDK ++R+L G+++ + + R N F +E ++ Sbjct: 114 LKIPYTGSGVLASALGMDKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQEI 173 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P VKP+ +G S GV KV S + A++ AF +D +VE+ I G E+ C +LG + Sbjct: 174 GFPCVVKPSREGCSTGVKKVMSRAGLSDALNGAFLWDCTALVEEFIDGMEVTCGILGGNP 233 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P A T E + TSD + + K++ G + PA + E KI+ +AV+A++ L G Sbjct: 234 PTALTPSETIATSDVLSLEDKFLYGQG-ENKTPARLPGETLMKIQEVAVKAFEALDLKGY 292 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 AR+D+F+T V++ E NT PG T ++ ASG+ T L+ R++E AL HA Sbjct: 293 ARIDMFVTSAGRVLVLEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAALSVHAGKK 352 Query: 359 A 359 Sbjct: 353 G 353 >UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS02_SYNAS Length = 352 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 107/363 (29%), Positives = 175/363 (48%), Gaps = 18/363 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L+VGI+ GG S+E EVSL S +N+ D +D ++ V + +D QG + N Sbjct: 2 MGRLKVGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQN 61 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 L+ A +A +D F +HG G+DG +QG+L Sbjct: 62 TTRDITERLKGEARRIA--------------YEDLKKEIDFAFISLHGKYGDDGCIQGLL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF---AEVESK 177 + +P+ G V+ASA MDK + +++LR AG+ + + + S V+ Sbjct: 108 ELLRIPYTGPGVMASALGMDKHLQQKILRAAGVAVPESLLVREEEWRQDSQIVKDRVKEF 167 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN- 236 G P F KP +GSSVGV+ V E ++ A ++D V+VE+ ++GRE C VL Sbjct: 168 PGYPCFTKPIREGSSVGVTVVRDEADLERGMEDALKWDRAVLVEEYLEGREFSCIVLEEE 227 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 EI S+F+ YD KY+ K P I P++ ++I+A ++A++ LG Sbjct: 228 GQFHPLELTEIHPQSEFFTYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIRAFKALGFR 287 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 R+D F+ + ++I + N+ G S + + +G+ + +IT LIE A+ H A Sbjct: 288 SYGRIDGFILNDGRILITDPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIENAIRIHEA 347 Query: 357 DNA 359 Sbjct: 348 KQG 350 >UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales RepID=DDL_BACHD Length = 305 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 171/352 (48%), Gaps = 49/352 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG SAE EVSL S K I++A+ + +V+ + Sbjct: 1 MKIAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPD----------------- 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 VD++F +HG LGEDG +Q +L + Sbjct: 44 --------------------------QVRDLVDLDVDLVFIGLHGRLGEDGKVQALLDLL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 N+P+VG+ V SA MDK K AG+ +A + L +F + P+ Sbjct: 78 NIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYDANAFNFTGT---YPVV 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQAS 242 VKP +GS++G++ +EE+ ++ AF D +++E+ I G E+ AVLGN ++ Sbjct: 135 VKPNQEGSTIGLTVAETEEELLQGIEEAFRHDDTILIEEFIAGTEVTVAVLGNKGEERSL 194 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EIV + Y Y++KY ++ +VPA I+ E ++ AV+A+Q LGC +RVD Sbjct: 195 PVVEIVPKNKLYDYESKY-APGMSEHIVPARISEEHTAYVQQAAVRAHQALGCDVYSRVD 253 Query: 303 VFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + VI ++NTLPG T S+YP + G+ Y ++I + L+L++ Sbjct: 254 FIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQTFVNLSLKK 305 >UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT22_9FIRM Length = 390 Score = 330 bits (848), Expect = 4e-89, Method: Composition-based stats. Identities = 117/378 (30%), Positives = 194/378 (51%), Gaps = 23/378 (6%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL------ 58 V +VFGG S EHEVS+ + +++ +DK +F+ + + I K+G+++ + Sbjct: 3 NVAVVFGGISVEHEVSVITGLQVIENLDKEQFNPIPIYISKEGRFYSGEMLKDFKTYKEG 62 Query: 59 -LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 I + L +D IFP +HGT GEDG++Q Sbjct: 63 KYREATEVFIIPQKGDRFLYSTKVVGGIFKKTHTENYIYARIDAIFPALHGTFGEDGAIQ 122 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI-SFAEVES 176 G+ N+P+VG VLA A MDK + K + + + + + R+ ++ S + Sbjct: 123 GLFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPVVDYTYFYRSELKDLQSVLKKCE 182 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECAVLG 235 KLG PL VKPAN GSS+G+SKV + A+++A +D K+IVE+ + REI AVLG Sbjct: 183 KLGYPLIVKPANLGSSIGISKVKDTLELTKALEVASNYDKKIIVEKCLTDHREINVAVLG 242 Query: 236 N-DNPQASTCGEIVLTSDFYAYDTKYIDEDGA--------KVVVPAAIAPEINDKIRAIA 286 + D+ + S C E + D Y KY+ K +PA ++ E+++KI +A Sbjct: 243 DQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMASQENQKKKLPADLSKEVHNKICQLA 302 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 ++++ + G++R+D L +EV +NEINTLPG S+ L++ GL + DL+T+L Sbjct: 303 KESFKAIDATGVSRIDFLL-KNDEVYVNEINTLPG----SIAFYLFEVEGLSFKDLLTKL 357 Query: 347 IELALERHAADNALKTTM 364 +E+A++R + Sbjct: 358 LEIAIKRFKEKEENVYSY 375 >UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteobacteria RepID=DDL_THICR Length = 313 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 165/347 (47%), Gaps = 51/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG +AE +VSL+S ++ A+ D V + Sbjct: 17 KVAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAVGCDVT-------------------- 56 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 AQ + D F +HG GEDG +Q +L Sbjct: 57 -----------------------SVAQLVEIAQKYDRAFIALHGRWGEDGGVQAVLDSLA 93 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP+ GS + ASA MDK TK L + GL FI ++ + ++ + L P+ V Sbjct: 94 LPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSPSRPLDVETFD----LTFPVIV 149 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP+++GSS+G+ KV + + AVD A ++D ++++EQ I GRE CAVL + +A Sbjct: 150 KPSHEGSSIGMRKVDTLDALQEAVDFAQQYDSEILIEQWITGREFTCAVL---DGEALPM 206 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 ++ DFY +D KY + + + P + +I+A+ +QA+ +G RVD+ Sbjct: 207 IQLKTDHDFYDFDAKYQS-NTTEYLCPCGLEIAEEKRIQALVLQAFDAVGARHWGRVDLM 265 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L +N+ + EINT+PG T+ S+ P +A L ++ L+ +LI L L Sbjct: 266 LDDQNQPWLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVLKLISLTL 312 >UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteriaceae RepID=C7N496_SLAHD Length = 317 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 104/350 (29%), Positives = 169/350 (48%), Gaps = 45/350 (12%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V ++ GGKS E EVSL S K +A++ S F+V LL D Sbjct: 11 NVAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLD---------------TAEKADL 55 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + P DV F +HG GEDG++QG L Sbjct: 56 KRLIDEP---------------------------FDVAFLALHGRGGEDGTIQGFLETVG 88 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS-FAEVESKLGLPLF 183 +P+ GS + AS+ ++K K AGL +A +T++ + + + +++ G+P Sbjct: 89 IPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTISEDDILDENLISDIVETCGIPCV 148 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP +GSS+G++ V A A+ A D + +VEQ I G E+ V+GND+ +A Sbjct: 149 VKPTTEGSSLGMTIVRDAADIAEAIKTALAVDVEAMVEQFISGTELTVGVIGNDDAEALP 208 Query: 244 CGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 +IV +FY Y KY G++ + PA ++ ++ + + +AV A+ LGC G++R D Sbjct: 209 VIQIVPTEDEFYNYHAKY-AAGGSRHLCPAPVSRDVTENAQEMAVAAHMVLGCRGVSRTD 267 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + + ++ + E NT+PG T S+ P + +G+ + L +LI LALE Sbjct: 268 IIVDADDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQLCEKLIALALE 317 >UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKY4_9GAMM Length = 313 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 101/348 (29%), Positives = 153/348 (43%), Gaps = 50/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG S E ++SL+S ++ A+ + D + + ++ Sbjct: 11 RVAVLMGGWSGERDISLKSGNAVLAALRRQGVDAHAVDLTRE------------------ 52 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 L D +F +HG GEDG+LQG L + Sbjct: 53 -------------------------TARCMALEGYDRVFIALHGECGEDGTLQGCLDMGG 87 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G+ VL SA MDK KRL L AP+ LT V LGLPL V Sbjct: 88 MPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLTPG----FDPEAVADALGLPLIV 143 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA GSS+G+++V A + A +V EQ I GRE AVLGN+ Sbjct: 144 KPARGGSSLGITRVDRVADLPAAFEAARVQPGQVFAEQWITGREFTVAVLGNEP---LPV 200 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EI S FY Y KY +D + P ++ +++++A+ A+ L G RVD+ Sbjct: 201 IEIRAASGFYDYHAKYEADDTGYLCPPPDLSRSAQLELQSLAIAAFAALEGCGWGRVDIL 260 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 E + E+NT+PG T S+ PK +G+ + +L R+++ + E Sbjct: 261 QDEHGENFLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRILDSSFE 308 >UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales RepID=DDL_METS4 Length = 382 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 149/354 (42%), Positives = 213/354 (60%), Gaps = 17/354 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNA 61 + V ++FGG+SAEHEVS+ SA N+ A+D R+ V + IDK+ G W + Sbjct: 2 RRNVALLFGGRSAEHEVSIVSAGNVARALDPDRYAVTPIAIDKETGAWRLCPPL------ 55 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 A+ +A +PG + + DV+ P++HG GEDG++QG L Sbjct: 56 APGEAPAMVREGPRVAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALD 115 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL-GL 180 +A +P+VGS V+ SAA MDKDV KRL+RDAGL I P++ R +++ E L Sbjct: 116 LAGVPYVGSGVIGSAAAMDKDVAKRLMRDAGLPIVPYLVA--GPRRGVAYTEAVEALESR 173 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVL--GND 237 LFVKPAN GSSVGVS+V Q+ A+ AF +D K+++E+ + REIE AVL Sbjct: 174 TLFVKPANMGSSVGVSRVADAGQFDQALAHAFAYDEKILIERAVPRAREIEFAVLETAEG 233 Query: 238 NPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + S GEI FY YD KY+D DGA +++PA++AP + +++ +A +A++ L C Sbjct: 234 EVRVSPPGEIAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALAC 293 Query: 296 AGMARVDVFLTPENE--VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 AG+ARVD+FL P++ + +NE+NTLPGFT ISMYPKLW A+GL L+ LI Sbjct: 294 AGLARVDLFLDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 347 >UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococcus RepID=DDL_PROMP Length = 355 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 125/359 (34%), Positives = 205/359 (57%), Gaps = 21/359 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK----SRFDVVLLGIDKQGQWHVSDASNY 57 EK +GI+FGG+S EH+VS+ SAK + A+ +RF V I+K G W +D S Sbjct: 5 EKKCIGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDNDQSLV 64 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 LL + + I+ N +D+ FP++HG GEDG++ Sbjct: 65 LLKEKRKNETIDKNQVFPKRE---------INFLNTIEFQGIDIWFPLLHGVNGEDGAIH 115 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA----- 172 G+L+ P VG +L SA MDK + K++ + ++ + + + Sbjct: 116 GLLKFTQKPIVGGGILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLSV 175 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 E+ KL LP+FVKPAN GSS+G+SK + + A+ A+E D ++++E+G+ RE+EC Sbjct: 176 EIIEKLKLPVFVKPANSGSSLGISKAKTRSEIIKALQKAWEIDSRIVIEEGLDVRELECG 235 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 ++GN AS GE+ ++D+Y YD+KY ++ ++++PA I +I+++I+ IA+++ + Sbjct: 236 IIGNLKLTASEIGEVSYSTDWYDYDSKYSMDN--QIIIPADIDSQISEQIKDIAIRSCRA 293 Query: 293 LGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L G ARVD FL N++ +NEINT+PGFT+ SM+P LW ASGL L+ +L++++ Sbjct: 294 LNIYGFARVDFFLEKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDIS 352 >UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia RepID=DDL_BORHD Length = 365 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 200/367 (54%), Gaps = 21/367 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-SRFDVVLLGIDK-QGQWHVSDASNYL 58 M K + ++FGG S EHE+SL+SA I A+ K ++++ IDK G W++ D+ Sbjct: 1 MMKKNLMLIFGGVSFEHEISLRSAYGIYSALMKLDKYNLYPSFIDKITGIWYLLDSVP-- 58 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D + R S+ ++ +PG +DV+FPIVHG GEDG++QG Sbjct: 59 ----DAPELIKRDSSAIISLIPGCG------IFVNDEDLEIDVVFPIVHGRTGEDGAIQG 108 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVE 175 L++ ++P VG+ +L SA ++K K LL+ + + PFI + + +++ Sbjct: 109 FLKMMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIK 168 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+ VKPA GSS+G+S ++ Q ++ AFE+D V+VE+ +K REIEC+V+G Sbjct: 169 QSLNYPVIVKPAMLGSSIGISIAYNDTQIEKCIEEAFEYDLTVVVEKFMKVREIECSVIG 228 Query: 236 NDNPQASTCGEIVLTSD-FYAYDTKYI--DEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 N+ + T GEIV+ FY YD KY + +PA + + I+ A Y+ Sbjct: 229 NEQIKIFTPGEIVVQDFVFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYKC 288 Query: 293 LGCAGMARVDVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L GMAR+D + + + +NEINT+PGFT+ISM+ K+ + GL Y L+ L+ LA Sbjct: 289 LELRGMARIDFLIEKDTNLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLVDNLVSLAF 348 Query: 352 ERHAADN 358 + +A Sbjct: 349 QSYAKRK 355 >UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=C1YHT6_NOCDA Length = 374 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 198/365 (54%), Gaps = 16/365 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+RV +VFGG+S+EHE+S +A +++ +D R+++V +GI + G W ++ L D Sbjct: 7 KIRVAVVFGGRSSEHEISCVTAGSVLSVVDHDRYEIVPVGITRTGNWVLTSGDPESLRID 66 Query: 63 DPAHIALRPSATSLAQVPGKHEHQ----LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 S + + + + L VDV+ P++HG GEDG++QG Sbjct: 67 AGTRALPSVSEDGVDLALPFDSAGQLMVVDPVKGPERLAGVDVVLPLLHGPFGEDGTIQG 126 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR--HNISFAEVES 176 + + + + G+ V +S+A MDK K +LR G+ + F+ +T + + Sbjct: 127 LFEMMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFVAITDRQWRTERKRVLDDVA 186 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGIKGREIECAV 233 +LG +FVKPA GSSVG+SKV V E D KV+VE + GRE+EC V Sbjct: 187 ELGATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREHDPKVLVEAQVVGREVECGV 246 Query: 234 LG---NDNPQASTCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQ 288 L P S E+ + DFY ++ KY+ + + +PA + E ++RA+A + Sbjct: 247 LESEDGGTPDVSLPAEVHVADGFDFYDFEAKYL--STSSLTIPAELPEEATARLRALAAE 304 Query: 289 AYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 ++ +GC G+ARVD F T + ++++NE+NT+PGFT S +P++W A+G+ Y L+ R+I Sbjct: 305 VFEAMGCEGLARVDFFYTEDGDILVNELNTMPGFTPASAFPQMWAATGVDYAALVERMIS 364 Query: 349 LALER 353 AL R Sbjct: 365 TALRR 369 >UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium RepID=C8W8J3_ATOPD Length = 319 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 113/357 (31%), Positives = 180/357 (50%), Gaps = 45/357 (12%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRF-DVVLLGIDKQGQWHVSDASNYLL 59 ++KL V +V GG S EHE++++S K A+ ++ F +V LL + + Sbjct: 6 LKKLHVAVVSGGWSDEHEIAMESGKQCAAALKEAGFINVDLLDVAE-------------- 51 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D DV++ +HG GEDG +QG+ Sbjct: 52 ----------------------------KDFVVALAQGDYDVVYVAMHGRFGEDGCIQGL 83 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN-RHNISFAEVESKL 178 L + ++P+ S VLASA +K+++K + R AG+ I + + ++ L Sbjct: 84 LEILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPSGTVFTDEQVDKLIEDL 143 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P+FVKP+ GSS GV++VTS E+ A+ LA E ++++E+ + G EI V+GNDN Sbjct: 144 GFPMFVKPSGNGSSYGVTRVTSREELPAALKLAGEQGERILIEECVVGTEITVPVIGNDN 203 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P A EIV +FY+ TKY V+PA + P + + + +A++A+ LGC G+ Sbjct: 204 PTALPIVEIVTGDEFYSIKTKYEPASLH-HVIPARLEPAVYARAQELAIKAHNALGCRGV 262 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +R D +T + E V+ E NT+PG T S+ P + G+ + +L TR IE ALE Sbjct: 263 SRSDFIVTEDGEPVVLETNTIPGMTARSLLPDSARTGGIDFPELCTRFIEFALEDRQ 319 >UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_HALHL Length = 304 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 158/348 (45%), Gaps = 55/348 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG SAE ++SL+S I+ A+ + +D Sbjct: 12 RVAVLMGGTSAERDISLRSGGAILAALQRCGYDAEAYDPR-------------------- 51 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + + L DV+F +HG GEDG++QG+L + Sbjct: 52 -------------------------DRALEGLRGYDVVFIALHGRGGEDGTVQGLLDLLG 86 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VL SA MDK KRL + +GL LT ++ +G P+ V Sbjct: 87 IPYTGSGVLGSALGMDKWRCKRLWQGSGLPTPAGQLLTG------DRPVLDEGVGYPVIV 140 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSS+G+S+V E+ A A +A +D V+ E ++G E A+LG+ QA Sbjct: 141 KPAREGSSLGMSRVEGPEELAEAYRVAAAYDDTVLAEAWVEGEEYTVALLGD---QALPS 197 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + F+ Y KY ED P+ + PE ++ A+ +A+ G G RVDV Sbjct: 198 IRLETPHAFFDYAAKYQAED-TGHHCPSGLGPEEEAELGALCREAFIASGGNGWGRVDVM 256 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + E+NT+PG T+ S+ P +G+G+ +L+ R++ AL Sbjct: 257 RDTGGRWWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARILGEALR 304 >UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLF9_9FIRM Length = 357 Score = 327 bits (839), Expect = 4e-88, Method: Composition-based stats. Identities = 111/365 (30%), Positives = 206/365 (56%), Gaps = 16/365 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + +++GGKS EHE+S+ +AK++++ +D+ ++ + + +DK G+W+ + + + Sbjct: 2 KNLYLLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRWNYLGKNTKNIENEK 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + G + + + + FP +HGT EDG++QG + Sbjct: 62 ELVV----------EGFGNVADSISNFFAKDFVNENAIFFPAMHGTFSEDGTIQGFFDIM 111 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKLGL 180 +L +VG++VL+SA CMDK + G+ + +T+ + ++ + K+G Sbjct: 112 DLTYVGNNVLSSAVCMDKGTANDVFAGNGILQPEYYLVTKYEFNKNKDLQIKNILEKIGE 171 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 F+KP N GSSVGV+KVT +E+ A+ AF++D++V+VE+ + G E++ V+GN+ + Sbjct: 172 VSFIKPCNAGSSVGVTKVTKKEEIEPALIEAFKYDNRVLVEEAVIGDELQVLVMGNNILK 231 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS G + +T +F+ Y+ KY DE ++P + E +I+++A +AY C G AR Sbjct: 232 ASLPGGVKVTREFFDYEAKYFDE-TTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFAR 290 Query: 301 VDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASG-LGYTDLITRLIELALERHAADN 358 VD+F+ + ++++NEINT+PG T +SM P ++ + Y+D + LIELA+E + Sbjct: 291 VDIFVRDSDRKMLVNEINTIPGMTAVSMAPAMYMKTFKKTYSDFLDELIELAVENKKEKD 350 Query: 359 ALKTT 363 +L T Sbjct: 351 SLTTN 355 >UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteobacteria RepID=DDL_XANAC Length = 318 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 108/350 (30%), Positives = 164/350 (46%), Gaps = 52/350 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG S+E EVSL S N++DA+ D + Sbjct: 18 RVAVLLGGTSSEREVSLNSGGNVLDALRARGVDAQPVD---------------------- 55 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHG--TLGEDGSLQGMLRV 122 + D +F ++HG GEDG +QG++ Sbjct: 56 ---------------------GIPALAKALVAQQFDRVFNVLHGHNGGGEDGIVQGLMEA 94 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ GSDVL SA MDK TK++ GL+ + L ++GLP+ Sbjct: 95 FGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGASAE-DIHAAARQIGLPI 153 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 VKPAN+GSSVGVS+V + Q AV LA +D +++EQ I+G E+ AVLG+ A Sbjct: 154 IVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGALLMEQLIEGDELTVAVLGD---TAL 210 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 IV +Y Y+ KYI +D + + P + E +IR +A+ A++ GC G RVD Sbjct: 211 PSIRIVPKGQWYDYNAKYIADD-TQYLCP-GLEGEAEAQIRQLALDAFRAAGCRGWGRVD 268 Query: 303 VFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 V ++ + E+NT PG T+ S+ PK + G+ + L+ R++E L Sbjct: 269 VMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWRVLEQTL 318 >UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus RepID=C7RG73_ANAPD Length = 345 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 112/354 (31%), Positives = 186/354 (52%), Gaps = 11/354 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + V I+ GG S+EH++SL+SA NI +++ ++ + L+ I+K+G + ++ D+ Sbjct: 2 INVYILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGA---YSEAFDKIDTDN 58 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + + ++ P VHGT GEDG++Q +L V Sbjct: 59 EFDLVKEVKENK------TKSIADFLTCLSKEDYSKTIVIPAVHGTYGEDGTIQALLDVI 112 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + ++G+ +L+SA CMDK + + L+ A ++ + + ++GLPL Sbjct: 113 GIAYIGNGLLSSAICMDKVTSNDIFEKNKLSQAKYLYTNKDGFDSDFADRCIEEIGLPLI 172 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP+ GSSVGVSKVT++ + A D A ++D KV+VE+ I+G+EIE AV+G NP S Sbjct: 173 VKPSANGSSVGVSKVTNKNELLAAGDEALKYDKKVLVEELIEGQEIEFAVVGYMNPDVSE 232 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 + F YD KY + K +P + E ++ + +AY+ GC G ARVD+ Sbjct: 233 PAAYISDHTFLDYDAKYFSKS-TKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVDI 291 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQAS-GLGYTDLITRLIELALERHAA 356 FL +N +NEINT PGFT S + +L + +++++ RLI+ ER Sbjct: 292 FLGKDNNFYVNEINTFPGFTPSSFFARLCELMYNESFSEVLDRLIKDGFERWQR 345 >UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=DDL_ACIB3 Length = 308 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 165/350 (47%), Gaps = 55/350 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GGKSAE VSL S + ++DA+ +S Sbjct: 9 KVAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFD---------------------- 46 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 ++ L D F ++HG GEDG +QG+L N Sbjct: 47 -----------------------PQNRSVTELVNYDRAFIVLHGRGGEDGQIQGVLEWLN 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G+ V SA MDK TK++ + + L AP+ +T+ V ++LGLP+ + Sbjct: 84 IPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITK----ETDLDSVIAELGLPVII 139 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP ++GSSVG+SKV E +A A++ A + D V+ E+ I GRE + L N Q Sbjct: 140 KPVHEGSSVGMSKVEKAEDFAAAIEKATQHDAVVMAEKWITGREFTISFL---NGQPLPV 196 Query: 245 GEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 + +D FY Y+ KY D + +P ++ K++A+ ++A+Q +G G R+D Sbjct: 197 IRLQPPADVAFYDYEAKYQRND-VEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRID 255 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + + E+NT+PG T+ S+ PK +A G + +L +++ LE Sbjct: 256 AMQDEQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILDQTLE 305 >UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas RepID=DDL_MARMS Length = 317 Score = 326 bits (837), Expect = 7e-88, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 162/363 (44%), Gaps = 52/363 (14%) Query: 1 MEKL----RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 M K + +++GG+SAE EVSLQS + + + + VV L + Sbjct: 1 MSKTLKESVIAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDL------------- 47 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 + +D D+ F +HG GEDG + Sbjct: 48 -------------------------YGSNAALDPIVQLQSIEFDLAFIALHGGEGEDGRV 82 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 Q +L + P+ GS LA MDK +TKR G+ +++ ++ +E Sbjct: 83 QALLEMFGKPYTGSSPLACGLAMDKVLTKRFWNGIGIPTPAYLSFVDHANADL----IEE 138 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 ++ P+ VKP+ +GS++G++K + + A+ A E+D ++VE+ I G E V+ + Sbjct: 139 QMSYPVIVKPSREGSTIGINKAMNRAELDDALIKALEYDSDILVEEFIDGPEFTVTVIDD 198 Query: 237 DNPQASTCG--EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 A + Y Y+ KYI +D + ++P + + ++++ +A+ AY++LG Sbjct: 199 ---VAYPPIGLKPAPDHKLYDYEAKYIADD-TEYLLPCGLDEDDENELQMLALDAYRSLG 254 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 C G RVDV + E+NT PG T+ S+ P + G+ Y L+ ++ + A ++ Sbjct: 255 CFGWGRVDVMRDQAGVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASLVEKIAQNAWDKV 314 Query: 355 AAD 357 + Sbjct: 315 GRN 317 >UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacteria RepID=DDL_PSYWF Length = 332 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 156/349 (44%), Gaps = 55/349 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V +VFGG S E VSL S ++ A+ D Sbjct: 37 KVAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFD---------------------- 74 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 Q+ L D +F ++HG GEDG LQG+L Sbjct: 75 -----------------------PKDQDVTELKNYDRVFNVLHGRGGEDGQLQGLLDWLG 111 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP GS VLASA MDK TK+L GL+ APF L + + ++ + LGLPL V Sbjct: 112 LPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVL----GADTDWQQIVNTLGLPLIV 167 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP ++GSS+G+SKV + ++ A ++A V+ E+ I GRE ++ ++ A Sbjct: 168 KPVHEGSSIGMSKVNTLDELPKAYEVAAGCGDVVMAEKWITGREFTIVIIDDE---AYPV 224 Query: 245 GEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 + +FY Y+ KY D + +P ++ E ++A+++ A++ + G R+D Sbjct: 225 IRLQPADISNFYDYEAKYNRND-TQYHIPCGLSAEEEAHLQALSLAAFKAVDAKGWGRID 283 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 E + EINT+PG T+ S+ P +A G+ + L ++ L Sbjct: 284 AMQDEEGNFWLLEINTVPGMTSHSLVPMAAKARGMNFEQLCWHILAQTL 332 >UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales RepID=DDL_ANASK Length = 308 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 114/347 (32%), Positives = 165/347 (47%), Gaps = 49/347 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 RV +++GG+S+E EVSL++ DA+ + DVVLL +D + + Sbjct: 7 KRVAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLEVAARLRA---------- 56 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 V+V F +HG GEDGS+QG+L Sbjct: 57 ---------------------------------ERVEVAFVALHGRFGEDGSIQGLLESM 83 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS VLASA MDK V+K + R GL +A + RA+ +I ++ GLP Sbjct: 84 AIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGSIGVGDLP--FGLPCV 141 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKPA +GSSVGV V + A A VIVE+ +KG E++ AVL + +A Sbjct: 142 VKPAGEGSSVGVHLVNEAAELGPACRDAASHAGDVIVERYVKGTEVDVAVL---DGKALG 198 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 EIV + FY Y KY K PA + + A A++ +GC+G+ RVD Sbjct: 199 AIEIVPANAFYDYAAKYT-AGTTKYFYPARLPEAHVRAVMEAAEAAHRGIGCSGVTRVDF 257 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + I E+NTLPG T S+ PK+ GL + DL R+++ A Sbjct: 258 IVAGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304 >UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ellin514 RepID=B9XIG4_9BACT Length = 304 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 100/354 (28%), Positives = 161/354 (45%), Gaps = 56/354 (15%) Query: 1 MEK-LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M K L++ ++ GG SAE EVSL++ + A+ V L K+ +W + + Sbjct: 6 MSKILKITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELDP-KEKKWSLPAGTE--- 61 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 V+F +HGT GEDG++Q Sbjct: 62 -----------------------------------------VVFLALHGTYGEDGTVQRE 80 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +P+ G D AS DK +TK+ +AG+ A F+ + A Sbjct: 81 LDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRS------AVWPMGWQ 134 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+ +KP QGSSVG+ V ++ + A +D +V++E+ I GRE +LGN Sbjct: 135 PPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEALRYDTQVLMEERILGRETTVGILGN--- 191 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + E+ + Y Y KY + + PA + +I+ A+ A++ +G + Sbjct: 192 RPLPIVEVRPKAGNYDYQNKYT-AGATEYLCPAPFDEAVTARIQEAALGAFKAIGGRDYS 250 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 RVDV + P E V+ E+NTLPG T S+ PK A+G+GY +L ++++LAL+R Sbjct: 251 RVDVMVRPNGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVDLALKR 304 >UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AC0 Length = 357 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 117/358 (32%), Positives = 196/358 (54%), Gaps = 5/358 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++ ++FGG S EH++SL SA ++ I + +++V+ +GI ++G+W + Sbjct: 1 MAKIKAAVIFGGTSREHKLSLASAAEVIRNIPEDKYEVICIGITRKGRWLYFPGDVEDIP 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + ++ ++ P LI+ + +DV+FP+V G G DG++QG+L Sbjct: 61 TGEWEQ-DPDCTSAIISPDPLHRGIILIE-NGEAVVRKIDVVFPVVMGKHGADGTIQGLL 118 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS--FAEVESKL 178 ++ +P+VG VLA+A+CMDK ++ D + A + +T+ I E+ +L Sbjct: 119 DLSGIPYVGCGVLAAASCMDKSHIHMVMDDYDIATADWRIITQREISEIDKRCHEIAGEL 178 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G PL VKPA G+S G K Q AV +AF D+KV+VE+ + GR++E AV G D Sbjct: 179 GFPLIVKPAKSGTSAGTGKADDLAQLIAAVKVAFSNDNKVVVEKYVSGRKMEAAVFGYDT 238 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P ++ GEI+ Y G + +PA I+ E+ IR AV+AY+ +GC G+ Sbjct: 239 PFSTYIGEILDPDRVYDPTE-VNQSTGDGLKIPADISDELQASIRETAVKAYKAMGCKGL 297 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 AR+D FLT + +++N+I T PG S++PKL + G+ + D + L+E A++ Sbjct: 298 ARLDFFLTDDGRLLLNKIGTSPGLRKNSVFPKLMEHMGISHEDFVDMLLEQAIDNAER 355 >UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YDR1_DICT6 Length = 311 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 180/353 (50%), Gaps = 48/353 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++G++ G KS+E E++ ++A+NIV+A+ +D + + ID+ Sbjct: 1 MKIGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDEN----------------- 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 ++V HG GEDG++QG+L + Sbjct: 44 --------------------------VVENIKKANINVAIISAHGKYGEDGTIQGLLELL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES---KLGL 180 +P+VGS VLASA +DK + K++ + +I L++ + KL Sbjct: 78 GIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELETKDLNNIVKNVSKLKK 137 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P +KPA QGS++G+S ++EE+ ++LAF++D +I+E+ IKG+EI + +NP Sbjct: 138 PWIIKPATQGSTIGLSLASTEEELLKGIELAFKYDENIIIEEYIKGKEITAGIYDINNPV 197 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI+ + FY Y+TKY + ++PA + E+ +K + + + A+Q LGC ++R Sbjct: 198 CLPLIEIIPKTGFYDYETKYT-PGLSDHIIPARLPKEVYEKAQGLGILAHQALGCRHLSR 256 Query: 301 VDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 VD+ + N + + E+NT+PG T S+YP+ +A G+ + +LI I+ L+ Sbjct: 257 VDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFPELIDSFIKATLK 309 >UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteobacteria RepID=DDL_BURPP Length = 313 Score = 323 bits (828), Expect = 8e-87, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 156/349 (44%), Gaps = 48/349 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ + + D Sbjct: 11 KVAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDP--------------------- 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 F +HG GE+G +QG L Sbjct: 50 ----------------------AERPLAALKEEGFVRAFNALHGGYGENGQIQGALDFYG 87 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 + + GS VL SA +DK TK + + G+ PF + R + + E+ +KLGLPLFV Sbjct: 88 IKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYEARSKEIVAKLGLPLFV 147 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQAST 243 KPA++GSSV V KV S + A+ A ++D V+VE+ ++ G E + GN + Sbjct: 148 KPASEGSSVAVIKVKSADALPAALIEAVKYDKIVVVEKSVEGGGEYTACIAGNLD---LP 204 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 IV +FY Y KYI D + ++P +A + +++ +A +A+ LGC R D Sbjct: 205 VIRIVPAGEFYDYHAKYIAND-TQYLIPCGLAADEEARLKVLARRAFDVLGCTDWGRADF 263 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L + E+NT PG T+ S+ PK +A G+ Y +L+ ++ L L+ Sbjct: 264 MLDADGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVGVLALTLQ 312 >UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXY6_HALNC Length = 324 Score = 322 bits (827), Expect = 9e-87, Method: Composition-based stats. Identities = 95/347 (27%), Positives = 160/347 (46%), Gaps = 48/347 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG S+E +SL+S + ++ A+ ++ DV + + + Sbjct: 9 RVLLLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRRD------------------ 50 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 L + D F I+HG GEDG +Q +L + Sbjct: 51 ---------------------FLPELLAAHQAKPFDRAFIILHGRGGEDGQIQAVLELLG 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G+ + SA MDK KR+ R GL P+ + I LGLP+ V Sbjct: 90 IPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVV----ATEIEAHRALDSLGLPVMV 145 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP +GSSVGV+KV +Q A A A + V++E+ I+G E ++LG +A Sbjct: 146 KPVAEGSSVGVAKVDQPDQLAAAFREAARYGQ-VMMERYIRGGEYTVSLLG---GRALPV 201 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + DFY +D KY+ D + +P+ ++ E ++AIA++A++ +G +G RVD Sbjct: 202 IRLSTPHDFYDFDAKYLAND-TEYTIPSGLSAEEESAMQAIALKAFEQIGGSGWGRVDFM 260 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + + E+NT+PG T+ S+ P +A G+ +L ++ L Sbjct: 261 RDEHGQNWLIEVNTVPGMTDHSLVPMAARAVGIEIEELCLGILAQTL 307 >UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteriaceae RepID=C6X2F8_FLAB3 Length = 339 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 101/354 (28%), Positives = 162/354 (45%), Gaps = 28/354 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K V +V GG S E+ VSL+S + I D++D+ ++V + + K +W+ D + Sbjct: 12 MNKKNVAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKD-EWYFLDDREQKVP 70 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + S + DV F I+HG GE+G LQ Sbjct: 71 VNKADFSVNLDSGFDV---------------------KFDVCFNIIHGKPGENGELQAYW 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + G SA +K T +L G+ A + + + + + L L Sbjct: 110 DTIGQKYTGCGFYQSALTFNKKDTLAVLSKYGIPAAKSVYIRKGEAIDED--GIIEDLKL 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNP 239 PLFVKP GSS+G+SKV + ++ A+D AFE D +V++E + G E+ V+ N Sbjct: 168 PLFVKPNQSGSSLGISKVKDKSEFQKAIDFAFEQDDEVLIESFLDGMEVSVGVVDFNGES 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EIV +F+ Y+ KY E ++ + PA I E K+ IA +AY +LG +G + Sbjct: 228 IVLGITEIVSHKEFFDYEAKY--EGASEEITPARIDDETRQKVEEIAKKAYNSLGMSGFS 285 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 R + + + E+NT PGF+ S+ P+ + G+ DL +E AL + Sbjct: 286 RSEFIIMG-GTPYMLEMNTNPGFSPASILPQQAKIYGISIKDLCGNEVEKALAK 338 >UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0A6_ERYRH Length = 338 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 109/350 (31%), Positives = 188/350 (53%), Gaps = 15/350 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL+V +VFG ++EH++S+ SA ++++ K +FD V L I K G+W+ + + ++ Sbjct: 1 MNKLQVALVFGSINSEHDISVASAASVLEHFPKEKFDCVPLYIGKDGKWYTGNYTLDMMQ 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ PG VDV F ++HG +GE G +QG+L Sbjct: 61 SNKLEGHR-ELYLQFNYDRPGFIYADDQSLL------PVDVAFLMLHGRMGEGGQVQGLL 113 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + AN+PF G DVL+SA CMDK T + AG+++A + +T N + K+ Sbjct: 114 KCANIPFTGCDVLSSALCMDKGFTHIICEAAGIDMAAYQLITHINDID------FEKVEY 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNP 239 P VKP+ +GSS GVS V + ++ A AFEFD +V++E IKG E+ +L + Sbjct: 168 PCIVKPSREGSSFGVSYVRNYDELLNACLFAFEFDSRVLIEAYIKGTEVGLGILKTDQEL 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 S ++ ++ + + + KY + + + + +++ + A+ L CA + Sbjct: 228 IVSEVDQVNVSGEVFDFQEKYHPH-ATETLPVSTFPESVRKEVQRLGELAFNVLDCAQFS 286 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 R+D F+T ++ + +NE+NT+PGFT+ S YP + +G+ Y +LIT++IE Sbjct: 287 RLDFFVTEDHRIFLNEVNTIPGFTSSSRYPGMLDRAGVSYPELITKMIED 336 >UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia magna RepID=DDL_FINM2 Length = 350 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 118/363 (32%), Positives = 207/363 (57%), Gaps = 18/363 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + +++GG S EHEVS+ SA+ +++ + K +++V + + + ++ + + + Sbjct: 1 MQK-NIYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIK 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D+ L + + + P VIFP +HG+ GEDG++QG + Sbjct: 60 SDEE-----------LILDTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFI 108 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +V +LPFVG +VL SA CMDK T + + A ++ L + + +N E+ K Sbjct: 109 KVLDLPFVGCNVLGSALCMDKGYTNDIFELNKIPQAKYVVLCKNDDYN--LKEIFEKTSK 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 ++VKP N GSSVGV + +EE+ A+ AF++D +++VE+ I G E++ AV+GNDNP Sbjct: 167 AVYVKPCNAGSSVGVMRAETEEELEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPV 226 Query: 241 ASTCGEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 AS G + +F+ YD KY D +++ P + ++ K R +A + Y+ + +G + Sbjct: 227 ASRPGVYQIHDVEFFDYDAKYND-SKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFS 285 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASG-LGYTDLITRLIELALERHAADN 358 RVD+F+ +NE+ +NEINT+PG T SM+P LW+ + + +++ LI LA+E + + Sbjct: 286 RVDMFV-KDNELWVNEINTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLAVEEYKKNK 344 Query: 359 ALK 361 A K Sbjct: 345 AYK 347 >UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MT57_9BACT Length = 331 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 171/354 (48%), Gaps = 27/354 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M++L + ++ GG S+E E++LQSA I A+D +++D+ L+ + WH + Sbjct: 1 MKRLNIALMAGGDSSEREIALQSAAQIASALDPAKYDITLIDLH-GRDWHYTSPDGRQWQ 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D D ++HGT GE+G LQG L Sbjct: 60 VDKN----------------------DFSITIDGEHKAFDYALILIHGTPGENGRLQGYL 97 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ + +S DK TKR + + G+ +A R +R I E+ LGL Sbjct: 98 DMMGIPYSSCSMTSSVVTFDKITTKRTVAEFGIPLARGFFFGRDSR--IDPKEIVRTLGL 155 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA-VLGNDNP 239 P+FVKP GSS GV+KV SE AV AF ++++E+ I+GRE+ C ++ Sbjct: 156 PVFVKPNASGSSFGVTKVKSEADILPAVAEAFTESDEILIEECIQGREMGCGMLIAKGRE 215 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EIV +F+ Y+ KY + + PA IAPEI ++ + AY+ C G+ Sbjct: 216 YIFPITEIVSKKEFFDYEAKYT-AGCSDEITPADIAPEIKAELNRLTALAYKACRCRGVV 274 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 RVD +TPE + + EIN++PG + S+ PK + +G+ +L +IE +R Sbjct: 275 RVDFIVTPEGKPYLIEINSIPGMSGGSIVPKQVREAGMTLGELYDLIIEDTYDR 328 >UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidiphilum infernorum V4 RepID=DDL_METI4 Length = 303 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 152/353 (43%), Gaps = 58/353 (16%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 + ++ GG S E E+SL++AK + DA+ +++ + + + DA Sbjct: 8 HIAVLKGGPSEEREISLRTAKAVEDALSSLGYEISSIDVTTEKFEIPRDAE--------- 58 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + F +HG+ GEDG +Q +L Sbjct: 59 ------------------------------------ICFLCIHGSFGEDGQIQRLLMRRG 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +PF GSD +S DK +K L G+ PF + + P + Sbjct: 83 IPFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPFCVVGDGKKIP---------FDPPYVI 133 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP+ QGSS+G+ V ++ A+ + ++DH V+ E I G+E+ +L + +A Sbjct: 134 KPSRQGSSIGIEFVYDIKELDQAIKKSTQYDHVVLAEALITGKELTVGIL---DGKALPV 190 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EI FY Y KY + + PA + + ++ A+ A+ LGC+ RVD+ Sbjct: 191 VEIKPKEGFYDYHHKYT-KGASTYFCPAPLTVDQTSAVQKTALDAFNVLGCSVYGRVDII 249 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 L+ + EINT+PG T S++P +ASG+ + L +++E++ R A Sbjct: 250 LSDNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKILEISYLRWKAH 302 >UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira RepID=DDL_LEPBJ Length = 351 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 108/359 (30%), Positives = 172/359 (47%), Gaps = 19/359 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + + FGG S EH +S+++ I + V + + + G W V + Sbjct: 1 MAK--IAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVVPLQYRISIP 58 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + L K + D++F +HG GEDGS+QG L Sbjct: 59 YEAVNSSDLFEEEFQKTNGVSKMDFISN--------LDADIVFLGLHGGKGEDGSIQGFL 110 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES--KL 178 RV +P+ GS V ASA MDK ++ +G +APF + + N V L Sbjct: 111 RVLGVPYTGSGVAASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTNSPEETVIKLMSL 170 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL---- 234 G P F+KP GSSV K+T++EQ + + L FE D KV+ + + G E+ C VL Sbjct: 171 GFPQFLKPVEGGSSVSTYKITNQEQLSRQLALIFESDSKVMSQSFLAGTEVSCGVLERYR 230 Query: 235 -GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 G A EIV +F+ +++KY + G++ + PA I+ + +++ +A+ A+ +L Sbjct: 231 NGKLERIALPATEIVPGGEFFDFESKY-KQGGSREITPARISKQEMTRVQELAIDAHTSL 289 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 GC G +R D + E I E NTLPG T S+ P+ +A+G+ ++ LIE+ L+ Sbjct: 290 GCRGYSRSDFIIVG-GEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIEIGLK 347 >UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M663_9BACT Length = 321 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 100/358 (27%), Positives = 161/358 (44%), Gaps = 49/358 (13%) Query: 1 MEKL-RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M +L ++ +++GG S E EVSL S + + A+ + ++ L+ + Sbjct: 1 MSELQKIVVLYGGNSPEREVSLVSGQAVEKALKSAGYETELIDLT--------------- 45 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + D+ FP++HG+ GEDG LQ Sbjct: 46 ---------------------------GPEKVFEALKTPCDLFFPVLHGSWGEDGRLQAA 78 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR--HNISFAEVESK 177 L ++ P+VGS LAS CMDK +K L AGL+ + + + + + Sbjct: 79 LDLSGRPYVGSGPLASGLCMDKWASKALFDRAGLHTPKGVLVRQKDGTGDLPGLLRALER 138 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAF-EFDHKVIVEQGIKGREIECAVLGN 236 G L VKP GS+V S V+ E+ A++ A+ + +VE+ I GRE+ A+ + Sbjct: 139 YG-KLIVKPNCGGSTVATSVVSCSEELLPALNAAWEQKSGGALVEEFIPGRELTVAMWDS 197 Query: 237 D-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 P+A EI+ S FY Y KY D ++ PA ++ E + AV A++ +G Sbjct: 198 GSGPEALPAVEILPASGFYDYQAKYTD-GASRYESPARLSGEEARALSEAAVAAWRAVGL 256 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 R D L P+ E V+ EINT PG T+ S+ P +++G+ D ++RL A R Sbjct: 257 RDYGRADFRLPPDGEPVLLEINTAPGMTSHSLVPMAAKSAGMELPDFLSRLARRAWSR 314 >UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VIQ4_9BACT Length = 314 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 94/356 (26%), Positives = 158/356 (44%), Gaps = 49/356 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEK + ++ GG S E EVSL S I A+ + V + Sbjct: 1 MEK--IVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEID------------------ 40 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +L D ++F +HG GE+G LQ L Sbjct: 41 --------------------PADYPKLSDLLTAVQNEQPLLVFNGLHGGSGENGELQAAL 80 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN----ISFAEVES 176 +A + F GS AS MDK ++K + G+ + +I + + ++ + Sbjct: 81 SLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILMREDLLEDYQDVEDYSGFSN 140 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 +LGLP+ VKP + GSSVG+S+V E AV A ++ H V++E+ I GRE+ ++ + Sbjct: 141 QLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSHSVLLEEYIPGRELTVTIIDS 200 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 + A EI +Y Y KY K PA I + ++ A++ ++ G + Sbjct: 201 E---AYPVVEIKPLEGWYDYTNKYTH-GKTKYEAPAQIDDTVAKLLQLYALRLWKAFGLS 256 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G AR+D + E+NTLPG T++S+ P +A+G+ + +L+ ++I +A + Sbjct: 257 GYARIDFRYDGL-KPYFLEVNTLPGMTSLSLTPMAAKAAGMSFQELLQKIIYIAAK 311 >UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6C5_9BACT Length = 334 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 158/367 (43%), Gaps = 64/367 (17%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M + ++ GG S E E+SL+S + A+ + +V+ + + Sbjct: 1 MRTRNIAVLMGGVSPEREISLRSGNAVAKALKDAGNNVICIDVK---------------- 44 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + +DV F +HG GEDG +Q +L Sbjct: 45 ---------------------------DEDIKELDHKEIDVAFIALHGYFGEDGRVQQLL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 V +P+ GS V AS MDK +KR DAGL + L + + + GL Sbjct: 78 EVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEYFLLKKPVNL-ADIEQEIQEFGL 136 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ +KP N GSS+GVS + + V A + + VE+ + GRE +L + + Sbjct: 137 PVVIKPTNGGSSIGVSIIKEGNNFHYHVGEALKCGDEAFVERYVSGREFTIGIL---DSR 193 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAA-----------------IAPEINDKIR 283 + EI + DF+ Y+ KY V+ + + DK + Sbjct: 194 SLPIIEICVADDFFDYNAKYNSGKTRYFVINKTFENKTNILNTPCCDVGFLDAALYDKAQ 253 Query: 284 AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 +A++A+ +GC G +RVD+ L +N+ I E+NT+PGFT S+ P +A+ + +T L Sbjct: 254 ELAIEAHNAIGCRGFSRVDILLDNKNDFYILEVNTIPGFTEKSLLPMAARAADISFTSLC 313 Query: 344 TRLIELA 350 ++++LA Sbjct: 314 EKIVDLA 320 >UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermaceae RepID=Q2S0H9_SALRD Length = 434 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 188/386 (48%), Gaps = 41/386 (10%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 E L+VGIV GG + EHEVS+ +A A+D+ R+ V + + K G W+ DA + Sbjct: 20 EPLQVGIVLGGVAPEHEVSVITALQAAAALDRDRYTPVPIYVAKDGTWYTGDALLEVEAY 79 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLID--------AQNGQPLPTVDVIFPIVHGTLGED 113 D + +LA P H L D Q +DV+ +HG GE+ Sbjct: 80 RDLDALREDALPVALAPTPYGHLELLEDRAPGILKRLQRPALRRRIDVMLLGLHGGPGEN 139 Query: 114 GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNIS 170 G +QG+ N+P+ + V SA MDK ++KR+ R AG+ + F+ L + Sbjct: 140 GGVQGLCETFNVPYTSAGVFGSALGMDKVMSKRVCRQAGIPVVDFVALREGEWAGREAAA 199 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REI 229 E E+ L PL VKPA GSS+G+++V + + A++ A +D KV+VE+ ++ REI Sbjct: 200 LDECEATLDYPLVVKPARCGSSIGIAQVNTRAELDAAIEDALRYDDKVVVEKAVEALREI 259 Query: 230 ECAVLGNDN-PQASTCGEIVLTSD--FYAYDTKYIDEDGA-------------------- 266 C+VLG+ + S E V + D + KY+ EDG Sbjct: 260 NCSVLGDGHEATPSVLEEPVPSDDDAVLTFQDKYMREDGEAAKAEGGTKSAESSPEGMAA 319 Query: 267 -KVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTN 324 +VPA ++ E + I+ +AV+ + CAG+ R+D + V NEINT+PG Sbjct: 320 QDRIVPANLSDERTETIQDLAVRIFHQFECAGVVRIDFMIDESTGRVYFNEINTIPG--- 376 Query: 325 ISMYPKLWQASGLGYTDLITRLIELA 350 S LW+ SG+ + L+ RL+ +A Sbjct: 377 -SFSFYLWEPSGVSFDALVDRLVTIA 401 >UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacteriales RepID=C7PEF5_CHIPD Length = 329 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 171/354 (48%), Gaps = 29/354 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +V GG S E+ +S+QSA I +D S+++V + + + G W+ + + L+ D Sbjct: 2 KKNIALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDG-WNYTGSDGQLIAVD 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + D +F +HGT GEDG LQG + Sbjct: 61 RNDFTLTINGNKVI----------------------FDAVFIGIHGTPGEDGRLQGYFEM 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGL-NIAPFITLTRANRHNISFAEVESKLGLP 181 +PF ++ SA +K +++ G+ N++ + + + + +L LP Sbjct: 99 LGIPFTSCGMVTSALTFNKSYCNKVVASLGVVNVSKSVHIFKDQ--PFDIQAILQELKLP 156 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQ 240 +FVKPA GSS+G+SKV + E+ A A++ AF D ++++E+ +KGREI C + N Sbjct: 157 VFVKPAEGGSSIGMSKVNTAEELAPAIEKAFNEDVQILIEEFVKGREITCGLYRSNGAFT 216 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI+ + +F+ Y+ KY ++ V PA EI ++I+ A + Y L C G+ R Sbjct: 217 VLPVTEIISSKEFFDYEAKYT-PGVSREVTPAEAPNEIVNQIQETAKKLYNKLNCRGIVR 275 Query: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +D N + E+NT+PG + S+ P+ +A+G + LIE L + Sbjct: 276 MDFIWEEASNRLFFLEVNTMPGQSENSIVPQQVRAAGKTLQEFYGTLIEECLRK 329 >UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular organisms RepID=DDL_RHOFD Length = 346 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 109/354 (30%), Positives = 163/354 (46%), Gaps = 50/354 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ A+ D Sbjct: 28 KVAVLMGGASAEREVSLMSGQGVLQALISQGVDAHAFD---------------------- 65 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P+ LA++ + F +HG GEDG++QG L + Sbjct: 66 ------PAERDLAELKVEGFSH---------------CFIALHGRFGEDGTVQGALELLG 104 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS V+AS+ +DK +TKR+ R GL + + A + +E + LG P+ V Sbjct: 105 IPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEWRQVDSA----AATSEAFAALGSPMIV 160 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP-QAST 243 KP +GS++G++KVT EQ A LA D V+ EQ +KG E+ +LG+ A Sbjct: 161 KPDREGSTIGLTKVTQIEQCGAAYALAARHDAMVLCEQFVKGDEVTIPLLGSGAGAHALP 220 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 IV Y Y KY D + +VPA + I+ +A++AYQ LGC G ARVDV Sbjct: 221 VIRIVAPDGNYDYQNKYFT-DTTQYLVPANLPAGEEAHIQQLALKAYQVLGCRGWARVDV 279 Query: 304 FLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + + EINT PG T S+ P +A+G+ Y L ++ A +AA Sbjct: 280 MIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALCLEVLRHATLDYAA 333 >UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteobacterium KB13 RepID=B6BWF0_9PROT Length = 299 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 164/350 (46%), Gaps = 54/350 (15%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLG-IDKQGQWHVSDASNYLL 59 M ++ ++ GG S E ++S++S + A+ ++V L+ I+ Sbjct: 1 MLIKKIALLSGGDSEERDISIKSGLAVYQALKNLNYEVSLIDPINTD------------- 47 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 L D F +HG GEDG +Q + Sbjct: 48 ---------------------------------LCSLVNYDAAFICLHGKNGEDGKIQSL 74 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L + +PF GS AS M+K +K + + L F+ L + N+ + ++ + L Sbjct: 75 LELLKVPFTGSASTASMLAMNKYYSKLVWNNHALITPKFLILNK---TNLDYKKIITHLS 131 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P VKP++ GSS G++ V +++ +A A ++D VI E+ I+GRE ++LGN Sbjct: 132 DPFIVKPSSSGSSFGINLVKNKDDLILAFTDASKYDPTVIAEEFIEGREFTVSILGN--- 188 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 ++ EI ++FY Y+ KY+ + P + PE+ +K+ IA+ A+ ++GC+G Sbjct: 189 KSLGVLEITTKNEFYDYNAKYVS-NETIFSKPTDLNPEVLEKMENIALSAFISIGCSGWG 247 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 RVD + + + E+NT+PG T+ S++P + +GL + + +++L Sbjct: 248 RVDFMMDKKFNFYLIEVNTVPGMTDHSLFPLAARNAGLNFEQTVQHIVDL 297 >UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular organisms RepID=DDL_BACAA Length = 304 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 172/354 (48%), Gaps = 52/354 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+G++ GG S+E +VS+ + ++ +DK+++++V + Sbjct: 1 MRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPI---------------------- 38 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + +D +HG GEDG++QG L Sbjct: 39 ---------------------TLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLESL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS++L+S CMDK+++K++LR G+ +I LT+ N KLG PL Sbjct: 78 GIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNFD---ELDKLGFPLV 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP + GSSVGV V +++ ++ FE+D +V++E+ IKG EI C++ Sbjct: 135 VKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIKGEEITCSIFDGKQ---LP 191 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 I ++F+ Y+ KY D + V+ + E+ +++ ++ Y+ L C+ ARVD+ Sbjct: 192 IISIRHAAEFFDYNAKYDDASTIEEVIE--LPAELKERVNKASLACYKALKCSVYARVDM 249 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 + + + E+NTLPG T S+ PK A+G+ Y+ L+ +IE +L + Sbjct: 250 MV-KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRVRKEE 302 >UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BAK0_9FIRM Length = 320 Score = 316 bits (811), Expect = 8e-85, Method: Composition-based stats. Identities = 115/336 (34%), Positives = 187/336 (55%), Gaps = 32/336 (9%) Query: 28 VDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQL 87 + +DK ++++ L+GI K G+W++ + L+ D A Sbjct: 1 MKHLDKDKYEITLVGIAKDGKWYILKQEDNDLSKDTWLDGAEVVEGVF------------ 48 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 L + DV FP++HG GEDG++QG+ +A LP+VG V AS+ACMDK K++ Sbjct: 49 ------NLLRSQDVAFPVLHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKV 102 Query: 148 LRDAGLNIAPFITLTRANRHNISFAE------------VESKLGLPLFVKPANQGSSVGV 195 AG+ + + + N + E + +LG+P F+K + GSSVG Sbjct: 103 FESAGIPQVKSVYVKKRNDGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGC 162 Query: 196 SKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + EE ++ A ++D ++VE+ + E+E AVLGND+ S G+I+ +FY Sbjct: 163 YRCDKEEDLMAKLEEAAKYDTHIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYT 222 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVIN 314 +++KY D + +K +PA + EI ++IR AV+A++ + G++RVD FL + N V +N Sbjct: 223 FESKYEDAE-SKTCIPAKVDEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLN 281 Query: 315 EINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 EINTLPGFT+ISMYP+L + G Y++L+ +LIE+A Sbjct: 282 EINTLPGFTSISMYPQLMEDYGYSYSELLDKLIEIA 317 >UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIX2_HALO1 Length = 330 Score = 316 bits (810), Expect = 8e-85, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 165/344 (47%), Gaps = 48/344 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RVG+++GG S+E EVSL+S ++ A+ + ++ V + W + LL Sbjct: 25 RVGVLYGGPSSEREVSLESGAGVLAALQERGYECVGVD------WTPGSSLPALL----- 73 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 V+V++ +HGT GEDG++QG+ Sbjct: 74 ------------------------------VEHRVEVVWNALHGTYGEDGAVQGLCACMG 103 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP G+ + ASA MDK ++KRL G+ + L A V ++ LPL + Sbjct: 104 LPCTGASIAASAVAMDKILSKRLFESVGVPTPQWRVLRP---DEGDTAAVFAEWALPLVI 160 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSSVG+S V ++ A+ A V+VE+ I+G E+ +L + + Sbjct: 161 KPAYEGSSVGLSLVRERDEIGPALKRARAGQGPVLVERYIEGVELSVGILAD---RVLGA 217 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EI TS Y Y+ KY+ +D A +VP + D A+ ++AY LGC G AR D+ Sbjct: 218 VEIRPTSGLYDYEAKYVRDDTA-FLVPPELERGHIDTCEALGLRAYHALGCTGYARADLR 276 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + + I E+NTLPG T+ S+ PK+ +G+ Y L R++E Sbjct: 277 VQADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCERILE 320 >UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteobacteria RepID=B3PCL8_CELJU Length = 328 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 165/353 (46%), Gaps = 57/353 (16%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RVG+++GG SAE E+SLQS ++ A++ + D Sbjct: 18 RVGVLYGGLSAEREISLQSGAAVIAALEDAGID--------------------------- 50 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 H+A+ +A + +D F ++HG GEDG +Q +L + Sbjct: 51 -HVAIDVGDNVIADI---------------QAANIDRAFLMLHGPGGEDGRIQALLEFLH 94 Query: 125 LPFVGSDVLASAACMDKDVTKRLL------RDAGLNIAPFITLTRANRHNISFAEVESKL 178 +P+ GSDV +SA MDK TK L L F LTR F +L Sbjct: 95 IPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVLTR----ESDFVAELKRL 150 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G + VKPAN+GSS+G+S+V + E A A ++ V+ E+ I G E A+L + Sbjct: 151 GGEVMVKPANEGSSIGMSRVKTAEDLQAAFVKATDYQGSVLAERLIVGAEYTVAIL---D 207 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +A + FY ++ KYI ED + + P ++ E +++ +A+ A+ LGC G Sbjct: 208 GEALPPIRLETDHSFYDFNAKYIAED-TRYICPCGLSAEKEQELKQLALTAFNVLGCRGW 266 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 RVDV + + E+NT PG T+ S+ P +A GL +T+L+ ++ +L Sbjct: 267 GRVDVMADAQQNFYLLEVNTAPGMTSHSLVPMAAKAVGLSFTELVVTILRASL 319 >UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacteria RepID=DDL_MARAV Length = 325 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 107/348 (30%), Positives = 164/348 (47%), Gaps = 51/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV + GG SAE EVSL+S K ++ A+ + D V I Sbjct: 24 RVAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAVGRDIQGC------------------ 65 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P D +F +HG GEDG+LQ +L A Sbjct: 66 -------------------------LLRTVDEPDFDRVFIALHGRGGEDGTLQAILGQAG 100 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS+VLASA MDK TK + GL F +T + + LG PL V Sbjct: 101 IPYTGSEVLASALAMDKLRTKYVFEGCGLPTPAFRAMTSVGEAEG----IVAALGTPLSV 156 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA++GSS+G+ KV S + A A + A D V+VEQ I+G E ++L + +A Sbjct: 157 KPAHEGSSIGIRKVNSAAELAEAYEAAARLDDLVLVEQWIEGPEFTVSLLQD---KALPA 213 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + FY YD KY+ +D + +P +AP+ +++ +A+ A++ LGC RVD+ Sbjct: 214 IGLSTDHAFYDYDAKYLADD-TRYRIPCGLAPDDELRLQHLALDAFRVLGCRTWGRVDIM 272 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 E + E+NT+PG T+ S+ P +A+G+ + +L+ R++ L Sbjct: 273 QDRAGEFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILRDTLA 320 >UniRef50_D2MND8 D-ala D-ala ligase N-terminal domain protein n=2 Tax=Erysipelotrichaceae RepID=D2MND8_9FIRM Length = 394 Score = 313 bits (802), Expect = 8e-84, Method: Composition-based stats. Identities = 117/379 (30%), Positives = 188/379 (49%), Gaps = 21/379 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KLRVG+ FGG+S EHEVS+ SA+ + A+DK +++V+ L + K + + + + + Sbjct: 2 KLRVGVFFGGESVEHEVSIISAQQAIHALDKDKYEVIPLYVAKDRKIYYNPEKFFSVENF 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQL---IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 L+ S G I + L T+D+ P++HGT GEDG++QG+ Sbjct: 62 TNLPALLKESIQVTLVNLGNECAIRPVHIGLFQKKTLGTIDLAIPVMHGTNGEDGTIQGL 121 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH--NISFAEVESK 177 + +PF G D+ + DK K +L D L I P+ + + E + Sbjct: 122 FEMLKIPFAGCDIYGAVIGQDKVFQKHILHDNHLPITPWFWVYGQDIETYQTQILEKVNS 181 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 LG P+ +KPA GSS+G+S E+Y A +D K+I E+ IK REI C+V+G+ Sbjct: 182 LGYPVILKPARTGSSIGISIAHDNEEYLDCFKDAMRYDEKIITEKVIKPMREINCSVIGD 241 Query: 237 DNPQASTCGEIVL--TSDFYAYDTKYIDE--------DGAKVVVPAAIAPEINDKIRAIA 286 ++ E V + +D KY VPA ++ E I+ +A Sbjct: 242 HTGSRASVLEEVTQQEKELLDFDKKYGSGGSKGKSGMAATSRQVPAPLSHEETKYIQQLA 301 Query: 287 VQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 ++ LG AG+ R+D + E ++ INEINT+PG S+ LW+ G+ ++ L+ + Sbjct: 302 KDTFRVLGSAGVCRIDFIMDAETKKIYINEINTIPG----SLAFYLWKEEGVDFSKLMNQ 357 Query: 346 LIELALERHAADNALKTTM 364 LI LAL+R N + T+ Sbjct: 358 LITLALDRERRRNQITTSF 376 >UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidetes RepID=DDL_FLAPJ Length = 328 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 162/351 (46%), Gaps = 30/351 (8%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + V +V GG S E +SL+S + I++ +DKS++++ + Sbjct: 1 MNVAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEV---------------------- 38 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 HI L+ + + + DV VHGT GEDG LQ + Sbjct: 39 --HILLKDWSVVIEGEKYPINKADFSFTKNGVITKFDVAINTVHGTPGEDGHLQSYWELI 96 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+ G + SA +K T +L + A I L + + + E++ LGLP F Sbjct: 97 DIPYTGCNFYQSALTFNKRDTLSVLTKFNIPKAKSIYLRKGDVIDG--NEIKKALGLPFF 154 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQAS 242 VKP GSS+GVSKV + +Q A++ AF D+++++E + G E+ VL + Sbjct: 155 VKPNQSGSSLGVSKVDALDQLEKALEFAFAEDNEILIESYLNGTEVSVGVLNYKGQTKVL 214 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ +DF+ Y+ KY+ ++ + PA I+ E + A + Y +LG +G +R D Sbjct: 215 GITEILSQNDFFDYEAKYL--GKSEEITPARISKEEEILVAESAKKIYNSLGMSGFSRTD 272 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + EINT PG + S++P+ + + ++ I LAL R Sbjct: 273 FIIM-NGIPHFIEINTNPGLSPQSIFPQQAMFAKMDMPQMLDNEITLALSR 322 >UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacillaceae RepID=DDL_LACC3 Length = 357 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 83/355 (23%), Positives = 156/355 (43%), Gaps = 12/355 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ ++ GG+S E VS+ S I +A+ + + + +A+ Sbjct: 1 MKIVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANT 60 Query: 64 PAHIALRPS---ATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + + + ++ QL D++F +HG GE+G +Q + Sbjct: 61 SKDLNISDAILTDEDINKLRPDGSTQLFGPNVMAICKAADIVFLALHGGDGENGKVQAVF 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + + GS LAS M+K +K ++ G+ + F R + Sbjct: 121 DINGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGFKEFKRDQGPKQTV-----PFDF 175 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP + GSSVG + ++E+ ++ F FD+ IVE+ GRE V+ N Sbjct: 176 PVVVKPTSGGSSVGTHIIHNQEELESGLEDVFRFDNSAIVEEFTPGREFSLGVV---NGH 232 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A + EI + S +Y + K+ + P + +++ ++ +AVQ LG R Sbjct: 233 AYSAIEIKVRSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQTMDVLGLQNYGR 292 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +D F + V + E N LPG T +S+ P+ +A G+ Y DL+ ++ L+ +A Sbjct: 293 IDFFANEKG-VWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIVNGKLKLYA 346 >UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Tax=Photobacterium RepID=Q6LQQ8_PHOPR Length = 308 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 170/350 (48%), Gaps = 55/350 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+G++ GG+S+E VSL+S + +V AI+ + + + D Sbjct: 5 MRIGVLLGGESSERSVSLKSGECVVKAIESLGHEAISI---------------------D 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P HI + +D +F +HG +GE G +Q +L + Sbjct: 44 PKHIDVTLMGFF----------------------KLDKVFIALHGGIGESGHVQALLDLL 81 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL--- 180 +P+ GS LASA ++K +K + + L A ++TL + +++++L Sbjct: 82 KIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKH----APIEDIKAQLSSVVC 137 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP +QG S+GVSKV + AV AFE+D +++E I GRE CAVL N + Sbjct: 138 PVVVKPISQGCSIGVSKVDNNADLLEAVITAFEYDDDILIESFIAGREYTCAVL---NGK 194 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 +I + F+ YD K+ + P+ + E ++A+A+ AY LGC G R Sbjct: 195 PLPIVQIR-SEQFFDYDAKFGSQSAT-YHCPSDLTSEQERDMQALALNAYNALGCRGWGR 252 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 VD L +V + E+NT+PG T S++P + +GL + +I+ L++ A Sbjct: 253 VDTILDESGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSLLDSA 302 >UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomonadales RepID=DDL_ERYLH Length = 323 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 105/364 (28%), Positives = 169/364 (46%), Gaps = 60/364 (16%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KL V ++ GG + E EVSL S + + A++K V + +D+Q +++A+ Sbjct: 6 KLHVVVLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAP------ 59 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 DV+F +HG GEDG++QGML + Sbjct: 60 -------------------------------------DVVFNALHGVPGEDGTVQGMLDL 82 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ S + S +DK++TK+ L G+ + + + + L P Sbjct: 83 MGVPYTHSGLATSVIAIDKELTKQQLVPRGIPMPGGRIVQSEDLYQQD------PLARPY 136 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLA----FEFDHKVIVEQGIKGREIECAVLGNDN 238 +KP N+GSSVGV+ VT E Y + ++ +++ E I+GRE+ AV+G Sbjct: 137 VLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFRELLAEPFIRGRELTTAVVG--- 193 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 QA E+ S FY +D KY D + V PA I PEI + A++A++ LGC G Sbjct: 194 GQALAVTELKPKSGFYDFDAKYTD-GMTEHVCPADIPPEIEALCKKYALEAHRILGCRGT 252 Query: 299 ARVDVFLTP---ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +R D ++ + + E NT PG T +S+ P+ +G+ Y DL+ ++E ALE A Sbjct: 253 SRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSYEDLVEAIVEAALEHFA 312 Query: 356 ADNA 359 A Sbjct: 313 AKTG 316 >UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYM6_UNCTG Length = 306 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 173/351 (49%), Gaps = 54/351 (15%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 + ++G+++GG S+E E+S++S K +++ K + +V + +++ Sbjct: 10 LSNKKIGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNR--------------- 54 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +DV + +HG +GEDG++QGML Sbjct: 55 ----------------------------SIAEEIKKEKIDVAYIALHGPMGEDGTIQGML 86 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS + ASAA +DKDV+K++ + A + + L + F V Sbjct: 87 EILGIPYTGSGIFASAASIDKDVSKKIFKYADILTPEWKMLKK-------FGTVPEIKKY 139 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP +QGS++GV+ V ++A AV F++ + ++EQ I+G+E+ VL N + Sbjct: 140 PVVVKPVSQGSTIGVAIVKRPSEFAAAVKEVFKYGDEALIEQFIEGKEVTVGVL---NGK 196 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EIV FY + KY + G++ ++PA I+ E + ++ A + Y+ C + R Sbjct: 197 ALPVVEIVPKGKFYDFKAKYQ-KGGSQHIIPAGISEEAYETVQNYAEKVYEIFKCRAICR 255 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 VD+ + ++ V + E NT+PG T S+ P +A G + L+ ++ E AL Sbjct: 256 VDMIVDRKDRVWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKITESAL 306 >UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogaceae RepID=DDL_FERNB Length = 316 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 94/359 (26%), Positives = 160/359 (44%), Gaps = 53/359 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + +G++ GG S E E+S++S K I A+ V + +D + +S+ Sbjct: 1 MYLGVLLGGISREREISIRSGKRIAQALRNMGHVVDEIDVDDNFIYKLSE---------- 50 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L D +F I+HGT GEDG +Q +L Sbjct: 51 --------------------------------LKKYDALFNILHGTFGEDGKMQAILDSI 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRD--------AGLNIAPFITLTRANRHNISFAEVE 175 +P+ GS V S DK + + + + + I F+ ++ +E Sbjct: 79 GIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFLLISSEEFEESKIYMIE 138 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 K+GLP VKP +GSS+G S+E+ A+ F+ ++IV++ IKG+EI +V+ Sbjct: 139 EKIGLPCVVKPRKEGSSIGTHICFSKEELLDALKNEFKNYDEMIVQEYIKGKEITVSVID 198 Query: 236 -NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 N P E+ FY Y+ KY D + ++PA + E +KI ++ Y++LG Sbjct: 199 INGTPTVLPILELRPKKLFYDYEAKYTD-GMTEFIIPAELDGETTEKINHAVLKIYKSLG 257 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C +R+D + + E+NTLPG T +S P A G+ + +L+ +I+ A + Sbjct: 258 CKHFSRIDGIV-KDGVFYFLEVNTLPGMTELSDLPMSANAFGISFDELVDLIIKEACRK 315 >UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATM1_RUBXD Length = 318 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 165/360 (45%), Gaps = 51/360 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R+ ++ GG S E +VSL + + + A+++ +V + +++ + + Sbjct: 3 RLAVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVEETTTERLIELEP-------- 54 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG++Q +L Sbjct: 55 -----------------------------------AAVFVCLHGPGGEDGTVQALLETLG 79 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI----SFAEVESKLGL 180 +P+ GS L+S CMDKD KR L AGL F T R + + + LG Sbjct: 80 IPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMNEMGAAAALNVAADSLGY 139 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDN 238 PL VKPA +GSS G+S+V E+ AV AF +D K+++E+ ++GRE+ +L + Sbjct: 140 PLVVKPAREGSSFGLSRVERPEELLDAVYEAFGYDAKILLERWVEGREVSVPILEPAGEA 199 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P+A EI Y + KY +PA + P ++ A+ Y+TLGC+G Sbjct: 200 PRALGLVEIRPREGAYNFQAKYT-PGMTDFAIPAELPPGTASRLEETALAVYRTLGCSGF 258 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 ARVD + E + ++ T+PGFT S +P +A+GL + L+ +++ AL AA Sbjct: 259 ARVDTIVEGE-TPQVLDVKTIPGFTETSTFPLAAEAAGLSFERLVEIILDSALRTEAAPK 317 >UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae RepID=DDL_AQUAE Length = 291 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 163/345 (47%), Gaps = 56/345 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG+S+E E+SL++ K + A+ + +V L +DK+ + + Sbjct: 1 MRVVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLEI--------- 51 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 D +F +HG GEDG++QG+L + Sbjct: 52 ----------------------------------KPDKVFIALHGRYGEDGTVQGLLEIL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKLGLPL 182 ++P+ GSD +ASA +DKD TKR+++ G+N + T + + N + + P Sbjct: 78 DIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVLNTEWNK------FPA 131 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 VKP +GSSVG+ V S E+ + +V+VE+ ++GR++ +L +A Sbjct: 132 VVKPVREGSSVGLKIVESLEELKEYALDLLKKTERVMVEEFVEGRDMTVGIL---KGEAL 188 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ Y Y+ KY ++ +++ K++ I+++ + L AR+D Sbjct: 189 PVVEIIPKKGVYDYECKYTKGMSEYRILK---DEKLSKKLQEISLKISKFLSLKDFARID 245 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 +T E ++ E+NT+PG T +S+ P + G+ + LI+ +I Sbjct: 246 FRVTKEGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290 >UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium RepID=DDL_CLOK1 Length = 297 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 101/349 (28%), Positives = 172/349 (49%), Gaps = 53/349 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++VGI+ GG S+E EVSL S K+I++ +DK+++++V + IDK+ Sbjct: 1 MKVGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVF------------- 47 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + +D F +HG GEDG +Q + + Sbjct: 48 ------------------------------EKVKDIDFAFIALHGKFGEDGIIQSVFQTM 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+ G L S CMDKD++K+LL A +N A +I + + + E K+G P+ Sbjct: 78 DIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICIKSIENIDYDYLE---KMGYPVV 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP + GSSV + + E A LAF +D +V++E+ I+G EI C +L + A Sbjct: 135 VKPNSGGSSVATTIIEKSEDIEEAARLAFNYDEEVMIEKYIEGDEITCCIL---DGTALP 191 Query: 244 CGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 I F+ Y +KY D ++VV + KI I+++ ++ C G RVD Sbjct: 192 ILAIKPNKGSFFDYTSKYADGGSEEIVVEFEKP--LQSKIEEISLKCWELFKCKGYVRVD 249 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + L + + E+NTLPG T S++PK + +T+L+ ++I+ ++ Sbjct: 250 MIL-KDKVPYVLELNTLPGLTKNSLFPKSANGVNISFTELLDKIIQCSM 297 >UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD72_PLALI Length = 338 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 141/348 (40%), Gaps = 48/348 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 + ++ GG S E +SL+S + + A+ + ++ + Sbjct: 17 NIALLAGGDSDERSISLRSGQAVCQALQERGHFILPIDP--------------------- 55 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 I + G D +F +HG GEDG +Q +L + Sbjct: 56 ----------------------AIVSLKGMDWNGFDAVFIALHGRFGEDGGVQTLLEESG 93 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS AS DK + K+ + + L+ + + +LG P+ + Sbjct: 94 IPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWCELSPHESFDSLLMK-AKELGWPVVI 152 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA+QGSS+GVS V EQ A + A +D +I+E I G E + ++ Sbjct: 153 KPASQGSSLGVSIVRQPEQLQSAYERARHYDEALIMEAAIVGSEWTVGLHDDE---ILPP 209 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I +F+ + KY D D + + + K+ A LG G++RVD+ Sbjct: 210 ICIETDREFFDWVAKYED-DHTRYIFDKPLPATCRQKLETACRGAVHALGVTGISRVDLM 268 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L E + EINT+PG T+ S+ PK Q +G +L I A++ Sbjct: 269 LDSEGNPWVLEINTIPGLTDHSLVPKAAQQAGWSLGELCEESIHRAIQ 316 >UniRef50_Q821S4 D-alanine--D-alanine ligase n=15 Tax=Chlamydiaceae RepID=MUDD_CHLCV Length = 811 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 104/371 (28%), Positives = 174/371 (46%), Gaps = 27/371 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL VG+V GG+S EH+VSL SA+N+V + +DV I++QG W + + Sbjct: 450 KKLSVGVVCGGQSCEHDVSLLSARNVVQYLSPQHYDVQYFVINRQGLWSQVANLDAGSDY 509 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + ++ ++ + L +D + PI+HG GEDG+LQG L Sbjct: 510 -------------------NSKNYHVLSSKIAEALANLDFVLPILHGPFGEDGTLQGFLE 550 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKL 178 +AN P+ G +L SA MDK +TKRL G+ + P+ LT + + Sbjct: 551 IANKPYGGPSLLFSAISMDKIMTKRLAASVGVPVVPYQPLTLPTWKRTPELCMRRILETF 610 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK A+ GSS+GV +V +E + + AF +D V +E+ G REIE + LG+ Sbjct: 611 TFPMFVKTAHLGSSIGVFEVHNETELKAKISEAFLYDTDVFIEESRLGSREIEVSCLGDA 670 Query: 238 N--PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAI--APEINDKIRAIAVQAYQTL 293 S E + F Y+ KY + + + + E +++ + + Y+ + Sbjct: 671 CSCYYISEPHERRGSKGFIGYEEKYGFNGKSSATIQYDLNLSEESKTRVKELTERVYRVI 730 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D FL E ++E+N +PG T S + + G + ++ +LI L + Sbjct: 731 QGKGSCRIDFFLDREGNFWLSEMNPIPGMTKSSPFLHDFARLGWTFEQIVHQLIIAGLHK 790 Query: 354 HAADNALKTTM 364 + +T Sbjct: 791 FDQKKKVSSTF 801 >UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFZ2_9BACT Length = 298 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 96/355 (27%), Positives = 163/355 (45%), Gaps = 63/355 (17%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ +V +++GG SAE EVSL+S + D++ + + VL+ +D+ +S+ Sbjct: 1 MKDKKVAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISE------- 53 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F +HGT GEDG +QGML Sbjct: 54 ------------------------------------AGADVCFIALHGTYGEDGRVQGML 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ GS A+ DK ++K G+ +I L K G+ Sbjct: 78 DIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELN------------APKKGM 125 Query: 181 P---LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 P +KPA QGSSVG+ V +EE+Y ++ AF++D KVIVE+ IKG E+ ++L Sbjct: 126 PFECCVIKPARQGSSVGIHIVQNEEEYFSKLEDAFKYDSKVIVEECIKGVELTVSIL--- 182 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + + I Y Y++KY + + V ++ + + A++A+ LGC+G Sbjct: 183 DGETLPVICIRPKKGVYDYESKYT-KGMTEYVFDTGLSASETECVENAAMKAFDVLGCSG 241 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R D+ + E+NTLPG T S+ PK +G+ + +++ +++ A + Sbjct: 242 YGRADIMYDGR-TPYVLEVNTLPGMTETSLLPKAANKAGMSFDNMVEKMLLGAFK 295 >UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=DDL_DICNV Length = 310 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 159/350 (45%), Gaps = 53/350 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGI-DKQGQWHVSDASNYLLNADD 63 +V +++GG S+E E+SL + + A+ + D LL D W + D Sbjct: 9 KVAVLYGGNSSEREISLIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKD---------- 58 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 F ++HG GEDG +Q +L+ Sbjct: 59 ---------------------------------EHFSRAFVMLHGRGGEDGEIQAILQWL 85 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS VLA A MDK V K++ + AGL + + +T +R ++ + Sbjct: 86 GIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPESRFETLVEQLHCQ---DFV 142 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KPA +GSSVGVS+V ++EQ A A+ A K++ E I GRE+ ++ + Sbjct: 143 IKPALEGSSVGVSRVKNQEQLAAAIPFAGGARAKIMAEPWIVGRELTYGIVND---TVLP 199 Query: 244 CGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EIV DFY YD KY + + + PA I ++ + R IA A+Q +G G RV Sbjct: 200 AIEIVAGNDHDFYDYDAKYHAAN-TQYLCPAPIDAALDARCREIAFAAFQAIGARGWGRV 258 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 D+ + +N + EIN +PG T S+ P Q G+ ++ L+ ++ L Sbjct: 259 DMIVDAQNRPYLLEINLVPGMTTHSLVPMAAQQIGMDFSALVQSILAQTL 308 >UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacteria RepID=DDL_PSEA6 Length = 318 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 98/346 (28%), Positives = 167/346 (48%), Gaps = 47/346 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++FGG+SAE EVSL+S + ++ A+ + + Sbjct: 19 KVAVMFGGRSAEREVSLRSGQAVLSALISAGVNAHGFD---------------------- 56 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P + E D + ++HG GEDGSLQG L+ N Sbjct: 57 ---------------PAESELH------QLVEQKFDRVLIMLHGRGGEDGSLQGALQQMN 95 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G+ VL SA CMDK +K++ + GL A + + + + + +++ S+LG + V Sbjct: 96 MPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNAANCSDIMSRLGDLVMV 155 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSS+G++KV++ +Q A A+ AFE+D KV++EQ I+G E ++L N +A Sbjct: 156 KPAQEGSSIGMAKVSNAQQLAAAIQQAFEYDDKVLLEQFIQGSEYTVSLL---NGEAMPS 212 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + DFY Y+ KY + + P+ + E + +A+ A+ + +G RVD Sbjct: 213 ISMSTPRDFYDYEAKYQS-NTTEYFCPSGLPAEQEGLLARLALDAFDAVAGSGWGRVDFM 271 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + E NT+PG T S+ P + +GL + L ++ A Sbjct: 272 QDMLGQFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQLSLAVLATA 317 >UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia muciniphila RepID=D2N2G7_9BACT Length = 316 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 157/354 (44%), Gaps = 59/354 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRF-DVVLLGIDKQGQWHVSDASNYLLNAD 62 L++ ++ GG AE EVSL S ++ DA+ ++ F DV + + + + + + Sbjct: 13 LKIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVH-GPDFRLPEGTE------ 65 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + I+HGT GEDG+LQ +L Sbjct: 66 --------------------------------------LAYNIIHGTFGEDGTLQAILEE 87 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ G+ +SA C +K +K++ +AG+ A + S V L LP Sbjct: 88 RGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTP------HAEILDCSNGIVMPSLPLPF 141 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP +GSSVGV V +E A++ A V+VE+ I+G+E+ +L + +A Sbjct: 142 VIKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEEFIQGKELTVGIL---DGKAL 198 Query: 243 TCGEIVLTSDFYAYDTKY---IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 I S FY KY G + PA + E ++ A++AY+ G Sbjct: 199 PVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAYKAAGVEVYG 258 Query: 300 RVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVDV L + + EINT+PG T S+ PK ASG Y DL ++ EL+L Sbjct: 259 RVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAELSLA 312 >UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrobiaceae RepID=B2UPW3_AKKM8 Length = 311 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 157/354 (44%), Gaps = 59/354 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRF-DVVLLGIDKQGQWHVSDASNYLLNAD 62 L++ ++ GG AE EVSL S ++ DA+ ++ F DV + + + + + + Sbjct: 8 LKIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVH-GPDFRLPEGTE------ 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + I+HGT GEDG+LQ +L Sbjct: 61 --------------------------------------LAYNIIHGTFGEDGTLQAILEE 82 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ G+ +SA C +K +K++ +AG+ A + S V L LP Sbjct: 83 RGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTP------HAEILDCSNGIVMPSLPLPF 136 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP +GSSVGV V +E A++ A V+VE+ I+G+E+ +L + +A Sbjct: 137 VIKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEEFIQGKELTVGIL---DGKAL 193 Query: 243 TCGEIVLTSDFYAYDTKY---IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 I S FY KY G + PA + E ++ A++AY+ G Sbjct: 194 PVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAYKAAGVEVYG 253 Query: 300 RVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVDV L + + EINT+PG T S+ PK ASG Y DL ++ EL+L Sbjct: 254 RVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAELSLA 307 >UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcus sp. MC-1 RepID=DDL_MAGSM Length = 310 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 156/350 (44%), Gaps = 47/350 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++ ++G+++GG S E EVSL+S + + A+ + VV + +D+ Sbjct: 4 KQKKIGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDRH--------------- 48 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++V +HG +GEDG++QG+L Sbjct: 49 ----------------------------ITKVLEREGIEVAVLALHGPMGEDGTIQGLLE 80 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR-ANRHNISFAEVESKLGL 180 +P+ G +V ASA CMDK ++KRL GL +I L + Sbjct: 81 FMGIPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIELAGDHEEADELVDHFLGDFHG 140 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 FVKP + GSSVG+S+ +++ V A H+ +VE+ I+GRE+ ++L + + Sbjct: 141 AAFVKPLDSGSSVGISRAVGKDELIRGVAKALSVSHRCMVERAIEGRELTLSIL---DGE 197 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EIV FY YD KY +V + + + + I + AY GC G+ R Sbjct: 198 AFPLIEIVPIDGFYDYDHKYTAGRTNYLVPAPNLDDKSLEAVVKIGLAAYHITGCRGLVR 257 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 D L E + E+NT+PG T +S+ PK A G+ L R+++ A Sbjct: 258 ADFILDGEGTPWLLELNTIPGMTELSLAPKAAHAVGIEMPQLAERILQGA 307 >UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B4D1Z2_9BACT Length = 315 Score = 307 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 100/359 (27%), Positives = 155/359 (43%), Gaps = 62/359 (17%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 ++ ++ ++ GG +E +VSL S + +A+ DV + + G + Sbjct: 12 LKNKKIAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDV--NGSDFIVP------- 62 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F ++HGT GEDG +Q +L Sbjct: 63 ------------------------------------AGTDVAFNVIHGTFGEDGQIQRIL 86 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + G V S +DK TK+ + + A F L L L Sbjct: 87 ESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFEILRDGANP---------TLPL 137 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P VK +GSSVGV V E + A + A+ + +++VE I GRE+ VLG+ Q Sbjct: 138 PYVVKAPKEGSSVGVFIVREEAKVADTMREAWSYGKELLVEDFINGRELTVGVLGD---Q 194 Query: 241 ASTCGEIVLTSDFYAYDTKYI-----DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A EI DFY +D KY A+ PA I+ E+ +++ +A+ A + + Sbjct: 195 ALPIIEIKPAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALAAARAIHL 254 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 RVDV LT E + EINT+PG T +S+ P+ A+G+ Y +L R+IEL+L R Sbjct: 255 ETYCRVDVLLTGAGEPYVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVIELSLARR 313 >UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteriales RepID=A4CP91_9FLAO Length = 329 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 154/353 (43%), Gaps = 29/353 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++ ++ GG S+E+E+SL+S + + +D+ ++D + I + + D+ + Sbjct: 3 STKKIAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGREYPVS 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + L D +F +HGT GE+G +Q Sbjct: 63 RHDFSVELEDG-----------------------TLRFDCVFNAIHGTPGENGLMQAYFE 99 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P +A +K +L+ AG+ A L R N + +GLP Sbjct: 100 LIGMPQTSCGFYQAAVTFNKRDLLGILKSAGVPAARSYHLDRGQELNQQA--ILDAVGLP 157 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP-Q 240 FVK GSS GVS V AV+ A + D ++++E ++G E+ V+ + Sbjct: 158 CFVKANRAGSSFGVSLVREASGLQAAVENALKEDDEILIEAALQGTEVSVGVIRYQGATR 217 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EIV +DF+ Y KY E ++ + PA I + +K+R +A + Y L G +R Sbjct: 218 VLPITEIVSENDFFDYQAKY--EGKSREITPARIPEDTAEKVRELAARIYDRLRMTGYSR 275 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + L + E + E+NT PG T S+ P+ +G+ T+L I AL++ Sbjct: 276 SEFILV-DGEPHLLEVNTTPGLTEASILPQQAACAGISLTELFGSAIADALDK 327 >UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacteria RepID=DDL_XYLFT Length = 304 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 162/350 (46%), Gaps = 52/350 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG SAE EVSL S +N+++ + D + Sbjct: 4 RVAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVD---------------------- 41 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHG--TLGEDGSLQGMLRV 122 + D +F ++HG GEDG +QG+++ Sbjct: 42 ---------------------GVPALAQALVERRFDRVFNVLHGHNGGGEDGVVQGLMQA 80 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ GSDVL SA MDK TK++ GL + +L+ + + LG P+ Sbjct: 81 FGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLS-VCATAVEVRKAVEMLGFPV 139 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KPA +GSSVGVS+V + E AV LA ++ ++++EQ I+G E+ ++L + A Sbjct: 140 IIKPAKEGSSVGVSRVFALEHLEEAVALAARYEGELLMEQLIEGDELTVSIL---DEMAL 196 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 IV +Y Y+ KY+ ED + V P + +I +A+ A+ ++GC G RVD Sbjct: 197 PSIRIVPQGQWYDYNAKYLAED-TQYVCP-GLDDVAEAEIAQLALAAFHSVGCRGWGRVD 254 Query: 303 VFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 V + E+NT PG T S+ PK G+G+ DL+ R++E L Sbjct: 255 VMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRILEQTL 304 >UniRef50_A6CDT2 D-alanine--D-alanine ligase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CDT2_9PLAN Length = 320 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 148/349 (42%), Gaps = 48/349 (13%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 + ++ GG+SAE E+SL+S + + A+ V ++ S L+ D Sbjct: 13 NIVVLSGGESAESEISLKSGETVARALSSRGHQVKIVD-----------PSLVDLDRFDW 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 DV+F +HGT GEDG++Q L Sbjct: 62 --------------------------------TGCDVVFLALHGTYGEDGTIQSTLDRLG 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ G D S K +K +N ++ + ++ + +G PL V Sbjct: 90 IPYSGCDAATSKLAFSKSASKERFIQHNVNTPSYVLIHESD-DAGRIEQHARSMGYPLVV 148 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP QGSS+GV+ V S E+ A+ F +D I+E IKG E V+ + Q Sbjct: 149 KPDAQGSSLGVTIVKSPEELPQALARCFHYDSFGILESAIKGTEWTVTVVDD---QVLPL 205 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 +I +F+ Y+ KY ED + + + + I V A LG G+ RVD+ Sbjct: 206 IQIQTPHEFFDYEAKYT-EDSTQYLFEFDLPTNVIQAIIKTGVNACTALGTTGIVRVDLL 264 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + E+NT+PGFT+ S+ PK +G+ + +L + + L++ Sbjct: 265 VDRFQQPWVLEVNTIPGFTDHSLVPKAAAKAGIDFGELCEQALTNCLKK 313 >UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9PTP4_9BACT Length = 392 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 105/357 (29%), Positives = 174/357 (48%), Gaps = 34/357 (9%) Query: 1 ME--KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDK-QGQWHVSDASNY 57 M+ K + IV GG S+EHEVSL+SA+ + DK +++V ++ I++ + + + Sbjct: 60 MKDLKRNIAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERMNWKVDLGNGERA 119 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 +++ +D + + D + +HGT GE+G +Q Sbjct: 120 IIDKNDFSFVHEGEQVF------------------------FDYAYITIHGTPGENGIMQ 155 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G + ++P+ S VL A DK V LR G+N+A I + R I VE++ Sbjct: 156 GYFELIDMPYSTSGVLVEALTFDKYVLNNYLRGFGVNVANSILVRRGEEFGIDERAVEAQ 215 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-N 236 LG+P FVKPA GSS GVSKV + +Q A A+ A D ++E + G EI Sbjct: 216 LGMPCFVKPAADGSSFGVSKVKNIDQLAPALRKALMEDDSAVIESFLDGTEISVGCYRVK 275 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 + E+V ++F+ YD KY + + PA IA E ++ + Y+ L C Sbjct: 276 GETKVLPATEVVSHNEFFDYDAKY--NGQVEEITPARIADETARRVAEETARIYEILNCN 333 Query: 297 GMARVDVFLTPE----NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 G+ R+D LT E +++ + E+NT PG T S P+ +A+G+ D+++ ++E Sbjct: 334 GIIRIDYILTKEPDGTDKINLIEVNTTPGMTPTSFIPQQVRAAGMEMKDVLSEIVEN 390 >UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9U3_BLASP Length = 331 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 171/360 (47%), Gaps = 30/360 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + IV GG + E +SL+S + + + K F+V + + + +W + D +N Sbjct: 1 MKK--IAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIE-KWILKDKNNKEYP 57 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + D +F +HGT GEDG LQ Sbjct: 58 VNKQ---------------------DFTVRITNDQILKFDCVFNAIHGTPGEDGVLQAYF 96 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ G ++ +K L++ G+ AP L + + ++ K+GL Sbjct: 97 HLLKIPYTGCHFHHASVTFNKKYCLTFLKEFGIKTAPSFFLNKNQ--SFCEKKILKKVGL 154 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNP 239 P FVKP GSS+G+SKV E + A A++ AF D ++IVE +KG E+ V+ N + Sbjct: 155 PCFVKPNRSGSSLGISKVYQERELAKAIEHAFRKDQEIIVESFLKGTEVSVGVISWNQDI 214 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + EI+ +DF+ +++KY ++ + PA + P + KI+ +A Y+ L +G++ Sbjct: 215 KVLPITEIISRNDFFDFESKYS--GKSQEITPARLLPSLEKKIKKLAKNVYEILNLSGIS 272 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 R + L + EINT+PG + S+ PK + +G+ ++L + I ++E N+ Sbjct: 273 RSEYILV-NGDPFFLEINTIPGLSEESILPKQLKIAGISLSELFKKNIYDSIEIFKKKNS 331 >UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RepID=B5FI74_SALDC Length = 285 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 94/349 (26%), Positives = 158/349 (45%), Gaps = 71/349 (20%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVD---------------------- 41 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P +AQ+ + +F +HG Sbjct: 42 ------PQEVDVAQLKAMGFQK---------------VFIALHGR--------------- 65 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 V+ASA MDK +K L + AGL +AP++ LTRA E +++ LGLP Sbjct: 66 ------GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 119 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 120 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 176 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 177 LPSIRIQPAGTFYDYEAKYLS-DETQYFCPAGLDASQEAALQSLVLQAWKALGCTGWGRI 235 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 236 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 284 >UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFD6_KOSOT Length = 305 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 90/351 (25%), Positives = 163/351 (46%), Gaps = 53/351 (15%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + R+ +++GG S E +SL+S N+++A++K + V + Sbjct: 5 RRRITVLYGGLSKERPISLKSGSNVINALEKLGYIVDAFDLRADN--------------- 49 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 L D++F +HG GEDG +Q +L + Sbjct: 50 ---------------------------ITELAKLRDTDLVFIALHGKFGEDGKIQSLLEL 82 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 + ++GSD L SA C +K++T +LL + + + + T+T P Sbjct: 83 FGIEYIGSDSLVSAICFNKNLTYKLLSNT-ITMPRWKTITSEEELEGWKH-------FPA 134 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQA 241 +KPAN+GSS+GV + E+ + +I+E+ IKGRE+ +++ P Sbjct: 135 VIKPANEGSSIGVYICDTFEELQNKTTKVLKEYKTLILEEYIKGRELTISIIEKGGQPVV 194 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 E+ FY Y+ KY + +VPA I ++ ++I+ ++ + + LGC AR+ Sbjct: 195 LPILELKPKRRFYDYEAKYT-AGLTEFIVPAPIDDKLKEEIKKLSKRIFTALGCRHFARI 253 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 D L EN+ E+NT+PG T++S P +A+G+G+ +LI +++ AL+ Sbjct: 254 DGIL-KENQFYFLEVNTIPGLTDLSDLPVSARAAGMGFEELIDLIVKEALK 303 >UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_RUTMC Length = 293 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 150/344 (43%), Gaps = 53/344 (15%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 + ++ GG SAE VSL+S + + A+ + WH + S Sbjct: 2 IAVLMGGNSAERAVSLKSGEAVYQALINQNINCFEFD------WHGYNLSELW------- 48 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 D F ++HG GEDG +Q L + Sbjct: 49 ------------------------------QQEFDQAFIVLHGRGGEDGYIQKQLENRCI 78 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 + GSD AS +DK TK + + L +AP I + LP VK Sbjct: 79 RYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSIVASIHKPIE------PIDFPLPWMVK 132 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 P +GSS+G+SKV S+ Q A+ LA++++ ++EQ I+G E A+LG+ +A Sbjct: 133 PTLEGSSIGISKVDSQIQLNNALMLAWQYNSHALIEQWIEGDEYTVAILGD---KALPVV 189 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 +I+ FY Y++KY + + + P ++ ++ IA++A+ + G RVD + Sbjct: 190 KIITDQGFYDYESKY-HSNKIQYLCPCGLSSSQEQVLQVIALKAFFAINAKGWGRVDFII 248 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 N+ + EINT+PG T+ S+ P +A G+ + L+ +I Sbjct: 249 NQHNKPYLLEINTVPGMTSHSLVPMAAKAMGMSFNKLVVAIINE 292 >UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aphidicola RepID=B6CM19_9ENTR Length = 310 Score = 302 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 164/349 (46%), Gaps = 50/349 (14%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V ++ GG S E ++S+ S ++ ++ +S Sbjct: 2 KKKVAVLLGGNSTERKISISSGHAVLKSLMRSGIKAYPFDTR------------------ 43 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + +HG GEDGS+QG+L Sbjct: 44 -------------------------DFPIMQLKKQKFDTAYIALHGKGGEDGSIQGVLEY 78 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES---KLG 179 +P+ GS ++AS+ +DK TK L + AGL + P + + + + + ++ KL Sbjct: 79 LKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDVYIQKKDILKNLSSLLKKRFFKLD 138 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 PL VKP NQGSS+G++ V + Q A+++AF + + ++VEQ IKG E ++L + Sbjct: 139 FPLLVKPNNQGSSIGITLVYLKNQLKNAIEVAFNYSNTILVEQFIKGTEYTVSIL---DE 195 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + +I+ ++FY + +KY + + P+ + + K++ IA +A+ TLGC G Sbjct: 196 KILPSIQIITKNNFYDFASKYQL-SSTQYLCPSGLNLKQEKKLKKIAKKAWDTLGCNGCG 254 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 R+DV L N+ + EINT+PG TN S+ P A G+ + +L+ ++ Sbjct: 255 RIDVILDSNNKFWLLEINTIPGMTNRSLLPISANAIGMSFDELVLNILN 303 >UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibrionales RepID=DDL_DESDG Length = 308 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 97/356 (27%), Positives = 152/356 (42%), Gaps = 52/356 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+ ++ GG S E +VSL A+ I A+++ V L Sbjct: 1 MRILLIAGGWSEERDVSLSGARGIHAALERLGHQVTLFD--------------------- 39 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 A + D F +HG GEDG +Q +L A Sbjct: 40 ---------------------PCRTLAGLLEAAQAHDFAFLNLHGQPGEDGLVQALLETA 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS S ++K K + GL ++ L + E P F Sbjct: 79 GVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHPGADW-----EPPFAFPAF 133 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +K N GSS+ + +V+ + A A+D F + I+E ++G E+ C VLG++ A Sbjct: 134 IKSNNGGSSLALHRVSCPGELARALDELFTRGGEAIIEPAVEGVEVTCGVLGDE---ALP 190 Query: 244 CGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 I + F+ Y +KY A+ + PA + E+ K+R A++A++ LG G +R D Sbjct: 191 PILIRPLGAGFFDYASKYT-PGQAEELCPAPLPGEVTAKVREYALRAHRALGLRGYSRSD 249 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 LTP + + E+NTLPG T S+ P+ A G+ + LI RLIEL L H Sbjct: 250 FILTPAGALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLIGRLIELGLAAHGKQQ 305 >UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4ECT1_9ACTN Length = 321 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 112/356 (31%), Positives = 167/356 (46%), Gaps = 48/356 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +E + V ++ GG SAE E+SL S KN+V A+ ++ + V L ID Sbjct: 6 LENMHVAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVEL-IDTA-------------- 50 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D DV F +HG GEDG++QG + Sbjct: 51 --------------------------ADDFMVTMATGGFDVAFIAMHGAGGEDGAMQGAM 84 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA DK+V+K L AG+ IAP + L + + + G Sbjct: 85 ETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLALEVGD--EVDIDHIVEVCGE 142 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 FVKPA GSS G+S V + A+ AF + KV+VE+ I+G EI V G D+ + Sbjct: 143 RCFVKPAVNGSSYGISLVHEPSELPAAIAKAFAYGDKVLVEKCIEGTEITVGVYGEDDVR 202 Query: 241 ASTCGEIVLT--SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A EI +FY D KY+D +PA I+PE + + +A A++ LGC G+ Sbjct: 203 ALPIVEIRKPEDCEFYDLDVKYVDPTDI-HRIPAQISPENYARAQELACAAHKALGCLGI 261 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQAS-GLGYTDLITRLIELALER 353 +R D ++ + VI E NT+PG T+ S+YP + + + + + LI + L R Sbjct: 262 SRSDFIVSEDG-PVILETNTIPGMTDTSLYPDEIRHTDDMTFPQVCDSLIRMGLRR 316 >UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH51_9BACT Length = 1029 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 165/352 (46%), Gaps = 56/352 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L++ ++ GG S+E +SLQSA+ + A+ +V + I Sbjct: 730 LKIAVLKGGPSSERPISLQSAEAVAKALRDGGHEVTEIDIT------------------- 770 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 D +D++FP++HG GEDG +Q ++ Sbjct: 771 -------------------------DFSLPAISKDIDLVFPVLHGEFGEDGQVQKLIEGQ 805 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 P+VG D+ +S C+DKD LR++GL + + L + E+ + LP Sbjct: 806 GFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRSKDE------EISQNITLPCV 859 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP QGSS+ +S V E A+DLAFE D V+VE KG E ++ + +A + Sbjct: 860 VKPNRQGSSISLSLVEKEGDLRKAIDLAFENDDTVLVESFFKGIECTVGLI---DGKALS 916 Query: 244 CGEIVLTSDFYAYDTKYI-DEDGAKVVVPA-AIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI+ F+ YD KY + + P I +++++++ ++++ L + RV Sbjct: 917 VVEIIPPEGFFDYDAKYTYSKGKTQYNCPPKEIPEDVSERLKKCGEESFKVLKGRHLMRV 976 Query: 302 DVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 D+ P+ ++ +I E NT+PGFT+ S+ PK + G+ +T+L L + A+E Sbjct: 977 DMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFTELCCGLAKKAIE 1028 >UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C25 Length = 302 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 164/346 (47%), Gaps = 53/346 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG+S E E+SLQS + ++ ++ +S+ + L Sbjct: 8 KVAVLLGGESNEREISLQSGQAVLTSLLQSKVNAFGLD---------------------- 45 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + L +F +HG GEDG +Q L Sbjct: 46 -----------------------PKFEPLSKLAECSRVFICLHGKDGEDGKIQSYLDDIK 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS AS MDK ++K + + +N F+ L +++ EV LG F+ Sbjct: 83 IPYTGSGFHASKLGMDKLLSKNIWKKLKINTPNFVRLEEG----MTYDEVCKNLGSSFFI 138 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 K AN GSS+G+SKVT +QY A + A++ D+ VI E I G E +L + + Sbjct: 139 KAANSGSSIGISKVTKPQQYQAAFESAYKVDNTVIAEMMIFGEEFTLPILDSSP---LSI 195 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 EI +DFY Y+ KY D + + PA + + DKI + ++A+ LGC+G RVD Sbjct: 196 VEIRPKTDFYDYEAKY-HRDDTEFICPAKLDKVLVDKINQLGMKAFNALGCSGWGRVDFM 254 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + +NEV I E+NT+PG T+ S+ P + SGL + L+ ++++ A Sbjct: 255 INNQNEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLDTA 300 >UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified Gammaproteobacteria RepID=A4A5G2_9GAMM Length = 315 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 91/335 (27%), Positives = 151/335 (45%), Gaps = 53/335 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 LR+ ++FGG S E +VSL SA ++ + ++ + L + W Sbjct: 10 LRIAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALDTGEPRWW-------------- 55 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + L D+ F I HG GEDG QG+L Sbjct: 56 ------------------------------ERLEDADIAFNIQHGVGGEDGVTQGLLASM 85 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + GSDVL SA MDK +K+L R GL A F + +E + F Sbjct: 86 GVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANFAMVDAHTDAAALLSEWGAA-----F 140 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP+ +GSS+G+S+V S + + A + A + ++ E+ I G E A+LG+ +A Sbjct: 141 IKPSAEGSSLGMSRVDSVDGFKAACEAAAVYGEGILAEEFIDGPEYTVAILGD---RALP 197 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 I + +FY Y+ KY + + +P ++ + + +A++A+ LGC+ RVD+ Sbjct: 198 PIRIEASREFYDYEAKY-KGNSTRYHIPCGLSDGEEETLCRLALEAFAALGCSIWGRVDL 256 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLG 338 E + E+NT+PG T+ S+ P +A+G+ Sbjct: 257 MRNRRGEFQLLEVNTVPGMTDHSLVPMAAKAAGMS 291 >UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SQZ6_PSYIN Length = 380 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 111/370 (30%), Positives = 187/370 (50%), Gaps = 11/370 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +++V +VFGGKS EH+VS+ SA +I+ ID ++ V + K G + L Sbjct: 4 SRMKVAVVFGGKSTEHDVSIISAGHILANIDMEKYFVEPFYVKKDGTFADHQELTLCLEN 63 Query: 62 DDPAHIALRPSATSLAQVPGKH---EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 H A ++ K + D G D++FP++HG GEDG++QG Sbjct: 64 LLNEHRDKIFPAMKEGEIELKKWIAKGTSSDFLGGIAGKKFDIVFPVLHGLNGEDGTIQG 123 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVE 175 ML +P+VG V ASA C+DK+ TK + + + + + + + N + +++ Sbjct: 124 MLEFMGVPYVGCGVSASAFCIDKEATKVICQVNDIPVMDYTAVKKYEWENSTENIINDIQ 183 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVL 234 K+ P +VKPA GSS+G+S+ + + ++ AF++D KV+VEQG++ RE+ V+ Sbjct: 184 KKMNYPFYVKPARLGSSIGISRAENTVELKTSLKDAFKYDCKVVVEQGVESPRELTVGVM 243 Query: 235 G-NDNPQASTCGEIVLTSDFY-AYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 G +D S GE S+ Y +D+KY K +VPA + I + I + ++ Sbjct: 244 GIDDQVSLSAIGEFSRGSNLYFNFDSKYGKTG-HKGLVPAPLEENIQEIIEKYSHLIFKK 302 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +G AR+D FL + +V +NEINT+PGF + ++WQ G+ I + IE + Sbjct: 303 FELSGFARIDYFLCGD-KVYLNEINTMPGFETGDTFMRIWQNKGVDMQKFIDKAIEYGVL 361 Query: 353 RHAADNALKT 362 + + Sbjct: 362 SFHSKSTRLY 371 >UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aphidicola RepID=DDL_BUCBP Length = 309 Score = 300 bits (768), Expect = 7e-80, Method: Composition-based stats. Identities = 91/349 (26%), Positives = 158/349 (45%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG S E +SL S NI++++ KS V + K Sbjct: 7 KIAVLLGGTSQERNISLISGYNILNSLLKSGIHAVAID-TKD------------------ 47 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P F +HG GEDG++Q +L+ N Sbjct: 48 ------------------------FPITQLPHQKFTKAFIALHGRDGEDGTIQSVLKYLN 83 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 +PF GS L SA ++K TK L + L + P++ + + + + + LGLP Sbjct: 84 IPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHINKHEFNKKFLQKFKKNISLLGLP 143 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP +GSS+G++ V S E A AF FD+ +++E+ I G E ++LG + Sbjct: 144 IIVKPNQEGSSIGITIVYSYETLYKACKTAFIFDNSILIEKFIYGEEYTISILGK---KI 200 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y++KY+ + P+ + +++ I + A+ + G RV Sbjct: 201 LPIIRICPENTFYNYNSKYLS-NRTTYFCPSGLNKLKELELKKITLTAWNIIDGTGWGRV 259 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV + +N+ + E NT PG T+ S++P + +G+ Y L+ +++ELA Sbjct: 260 DVIMDYKNKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQKILELA 308 >UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=DDL_GRAFK Length = 326 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 154/350 (44%), Gaps = 29/350 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ I GG S+E+ +S+ S + +D ++ + I K G+W V + Sbjct: 2 KKKIAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILK-GEWFVVADDD------ 54 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 P + + D +F +HGT GE+G LQ L + Sbjct: 55 ----------------TPYPINKSNFTVKINDKVIQFDCVFNTIHGTPGENGLLQAYLEL 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P D SA +K +LR G+ A L + N E+ K+GLP Sbjct: 99 IGIPQTSCDYYQSALTFNKRDLISVLRPYGIKAATNYFLNKDQEINT--KEIVDKVGLPC 156 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQA 241 FVK GSS GV+KV +E++ A AF D + I+E + G E+ V+ A Sbjct: 157 FVKANRAGSSFGVTKVKTEDEIISAAKTAFTEDDEAIIESFLDGTEVSVGVITYKGKVLA 216 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI+ +F+ Y+ KY+ ++ + PA I+ E K++ IA+ Y+ L G++R Sbjct: 217 LPVTEIIPDGEFFDYEAKYL--GKSQEITPARISEEDTKKVQDIAIMIYKKLKMKGLSRS 274 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + E E E+NT PG + S+ P+ + +G+ DL IE AL Sbjct: 275 EFIF-HEGEPHFIEMNTNPGISQASILPQQAEKAGISLKDLFGSTIEAAL 323 >UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FB14_9ACTN Length = 325 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 116/357 (32%), Positives = 179/357 (50%), Gaps = 50/357 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRF-DVVLLGIDKQGQWHVSDASNYLLNAD 62 ++V ++ GG S E E+SL S KN A+ ++ + V ++ ++G + NY Sbjct: 15 MKVAVLAGGISDEREISLASGKNAAAALTEAGYGTVEMVDPGERGFLSRLENGNY----- 69 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 DV F +HG GEDG Q +L Sbjct: 70 -------------------------------------DVAFIALHGFGGEDGMTQHILEF 92 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ GS+ LAS MDKD++K L R AGL +AP +T TRA+ S E+ +G Sbjct: 93 LGIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRADMP--SIDEIVEIVGPQS 150 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP-QA 241 FVKP GSS G+S V + A++LAFE KV+VE + G E A LG+ +A Sbjct: 151 FVKPVVNGSSYGISLVKDPSELTAAIELAFEHGDKVMVEHRVFGVECSVAALGDGETLRA 210 Query: 242 STCGEIVLT--SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EI++ S+FY + KY D + +PA + ++ +++ IA +A++ LG G++ Sbjct: 211 LPVVEIMMPQQSEFYDLEVKYADPNDI-HRIPAQLPEDVYAQVQDIACRAHEALGLFGIS 269 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 R DV +T + +I E N +PG T+ S+ P + +G+ ++DL L+ELALER A Sbjct: 270 RTDVIVTEDG-PIILETNNIPGMTSESLVPDEARHAGIAFSDLCAELVELALERAAR 325 >UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobacteria RepID=DDL_CAUSK Length = 322 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 152/356 (42%), Gaps = 54/356 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 + ++ GG SAE EVSL + A+++ V + K ++ + Sbjct: 13 HIAVLLGGPSAEREVSLVTGAAYAAALERLGARVSRVDPGKDVAQVLTALAP-------- 64 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 D++F +HG GEDG +QG+L Sbjct: 65 -----------------------------------DLVFNGLHGRWGEDGCVQGVLETLG 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 L + S VLASA MDK +K +L AG+ + R + + P V Sbjct: 90 LAYTHSGVLASALAMDKAKSKAVLAAAGIPVPGGGLFDRHDVAQGHV------MPPPYVV 143 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGIKGREIECAVLGNDN-PQA 241 KP +GSSVGVS V A + F +V+VE I G E+ AV+G N P+A Sbjct: 144 KPNAEGSSVGVSLVFEGANGPPRQLAAPDWAFGEQVMVEPYIPGLELAVAVVGESNGPRA 203 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI ++ FY YD KY + G+ V+PA I + D+ +A + LGC G+ R Sbjct: 204 LAVTEIRSSTGFYDYDAKYS-QGGSIHVLPAPIPDAVRDRALHLAKLGHTALGCQGVTRS 262 Query: 302 DVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 D + +V+ E+NT PG T S+ P+ +G+ + L+ ++E A R A Sbjct: 263 DFRYDDINDLLVLLEVNTQPGMTPTSLVPEQADHAGVSFDRLVFWIVEDAYARRFA 318 >UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N436_9BACT Length = 702 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 155/353 (43%), Gaps = 55/353 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG S E E+SL+S + A+ FDV + + + Sbjct: 316 KINLLLGGASNEREISLKSGSAVAQALRNGGFDVTVTDVTECR----------------- 358 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + DV++P++HG GEDG +Q ++ A Sbjct: 359 ---------------------------LLPEMREADVVYPVLHGGFGEDGRIQKVMEEAG 391 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 L FVGS AS MDK TKRLL G+ A + +TR E+ L LPL + Sbjct: 392 LRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTR------DRRELPQNLKLPLIL 445 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 K +GS+ G+ KV E++ A++ F +++VE+ I G EI ++ N + Sbjct: 446 KVPMEGSTFGIVKVERAEEWDAALEKEFAMAGELLVEEYIDGIEITVPIV---NGEVLPA 502 Query: 245 GEIVLTSDFYAYDTKYIDEDGA-KVVVPAA-IAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI FY YD KY+ +DG + PA ++ E AV+ Y GC + RVD Sbjct: 503 IEIKSPHGFYDYDAKYVYKDGHTEYFCPARSLSAEQVADASRQAVKFYLGAGCRDILRVD 562 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + + + E N++PG T S+ PK + SG+ + + L+ A+ RH Sbjct: 563 FIVGKDGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEKMTATLVYAAMRRHE 615 >UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9D0_9PORP Length = 329 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 112/354 (31%), Positives = 165/354 (46%), Gaps = 29/354 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K + I+ GG S E EVS +SA+ I+ ID+S F L+ I W V+DA+ Sbjct: 1 MDKPNIAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITAD-AWSVTDATGREGT 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D A+ G T V + +HGT GE+G LQG L Sbjct: 60 IDRALV-----------------------ARFGAEEVTFAVAYITIHGTPGENGLLQGYL 96 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA--NRHNISFAEVESKL 178 + +P+ VL A +K+ L GL IA L ++ES L Sbjct: 97 DMLGIPYTTGGVLCEALTFNKEACNAYLAHHGLRIARSQRLHNQTKELSPEEQQQIESTL 156 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA-VLGND 237 LPLFVKP GSS+ +++ +Q A AV A+ V+VE+ I G E+ C V+ D Sbjct: 157 RLPLFVKPNTGGSSIATTRIEQWDQLATAVVDAYTAAPDVLVEECIVGTEVTCGCVILPD 216 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 A E+V F+ YD KY + + PA I+PE+ +++ ++ L C G Sbjct: 217 EAFALPVTEVVAHDTFFDYDAKY--YGKSDEITPARISPELTQRVQETSLTIAHLLDCYG 274 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 R+D + + + E+NT PG T S P+ +A+GL +DLITR+I+ L Sbjct: 275 FVRIDFIIEADGIPTLLEVNTTPGMTEASFIPQQVRAAGLQLSDLITRIIKSKL 328 >UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma whipplei RepID=DDL_TROWT Length = 347 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 110/353 (31%), Positives = 181/353 (51%), Gaps = 21/353 (5%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R+ ++FGG+S EH VS SA+ +++ I + V+ +GI K G + + D Sbjct: 3 RLLLLFGGRSQEHSVSYASARALLEHICDE-WTVIPVGITKHGDFVYCSTVSEQ----DY 57 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + + G + +++ A+ D++FP++HG GEDG++QGML + + Sbjct: 58 GEVIDNGNRVVWPSRAGCKKIEVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDLLD 117 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKLGLP 181 +P+VGS V ASAA MDK TK L AG+ + P+ + H + ++ + P Sbjct: 118 IPYVGSGVFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDSFLKQISDRFTFP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 LFVKP + GSS G + V EQ +A++ A + IVE + E+ C+++ N+ Sbjct: 178 LFVKPVDAGSSFGCTFVDFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSLIENNG--V 235 Query: 242 STCGEIVL----TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 C E+V S FY Y KY+ + + V+PA D IA + + LGC Sbjct: 236 LQCSELVFVKHSGSKFYDYSAKYL--NPVEFVIPAQFDN--TDGYAEIASKVFFELGCRH 291 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 AR+D F+T +V+NEINT PG T S++P +++ + Y+ +I ++ A Sbjct: 292 YARIDFFVTESG-LVLNEINTSPGLTQKSIFPSSFKS--MQYSQVIETILASA 341 >UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W8_9ZZZZ Length = 301 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 161/353 (45%), Gaps = 54/353 (15%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K +V ++ GG SAE EVSL + K + A+ K+ ++VV Sbjct: 1 MAK-KVLVLMGGFSAEREVSLTTGKCVCAALKKAGYEVV--------------------- 38 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + DV+F +HG GEDG +QG L Sbjct: 39 --------------------SHDLQNGFELVETLKKEKPDVVFNALHGNWGEDGEIQGFL 78 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 V +P+ S + AS MDK +TK L + G+ + +T F + L + Sbjct: 79 DVLQVPYTHSGLKASVLGMDKSLTKELASENGIKVPQGEKMT-----FRKFKAEGTFLKM 133 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P VKP + GSSVGV + +E +E D ++++E+ I G+E+ C VLG+ Q Sbjct: 134 PYVVKPVSDGSSVGVYIIRKKEDAEAVR---YEDDREILIEEFIDGKELTCMVLGS---Q 187 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A E+ + +FY Y KY + ++PA I E ++ + A + LGC ++R Sbjct: 188 AHVVTELRASDEFYDYHAKYT-AGATQHILPAEIPEEAANRCKLYAEHMHNILGCRSVSR 246 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 D PE+ VV+ EINT PG T++S+ P+ + G+GY L + L+E A R Sbjct: 247 CDFRYNPEDGVVLLEINTAPGMTDLSLVPEQAKYIGIGYERLCSYLVENASCR 299 >UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=DDL_COPPD Length = 304 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 161/349 (46%), Gaps = 46/349 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + + ++FGG S E E+SL+S +NI + V L Sbjct: 1 MNIVVLFGGTSPEREISLKSGENIAATLRARGHQVETLD--------------------- 39 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + D +FP +HG GEDG +QG+L + Sbjct: 40 ---------------------TAVPNFVEQLMQLKPDCVFPALHGADGEDGKIQGLLSIL 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+VGSDV AS MDK +TK + +G+ FI + + +VE KLG P Sbjct: 79 HIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVYDP-HLVPDYWDVERKLGSPFI 137 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQAS 242 VKP + GS++G+S V S +Y +A++ AF F ++++E+ I G E+ + + Sbjct: 138 VKPCDVGSTIGLSLVRSASEYEVALEEAFRFSDRLLLEEFIDGFEVTVGLFRLGGDFLVL 197 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 +V + YDTKY GAK V I+ E +++ + + + + +G G+AR+D Sbjct: 198 PPIYVVKPDRIFDYDTKY-KPGGAKHVYDLPISVEARERLTSYSKRICKIVGIGGVARLD 256 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + + + EIN++PG T S+ P + +G + + + LI+ AL Sbjct: 257 YIV-KDETPYLLEINSIPGMTAESLVPDEVRHAGRDFGEFLEDLIKDAL 304 >UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TN08_9BACT Length = 308 Score = 297 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 97/352 (27%), Positives = 160/352 (45%), Gaps = 47/352 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+ ++ GG S E VSL S K + + + V L+ + +A L D Sbjct: 1 MRISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLS------SPEALFSFLAGDR 54 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P + F +HG GEDG LQ +L +A Sbjct: 55 PE-----------------------------------LCFVALHGGWGEDGRLQAVLDMA 79 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ GS A MDK ++K AGL++ + + + + SK G L Sbjct: 80 GVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDVPWGVAVHPGEGSSP--MKALSKWGT-LV 136 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-PQAS 242 VKP GS+V V+ E++ A+ A+E +++ +VE + GRE+ V+ + P+A Sbjct: 137 VKPCCGGSTVATYIVSEEDELRKALSSAWELENRALVEAYVAGRELTVTVVEDRGIPRAF 196 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ +FY Y KY G++ V PA + P + + + A A++ GC+ +RVD Sbjct: 197 PIVEILPDGEFYDYRAKY--GGGSRYVSPADLEPSVVEVVSRSAEIAHRVSGCSIYSRVD 254 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + L +N + EINT+PG T+ S+ PK A G + DL+ ++E ++ Sbjct: 255 IRLDGKNRPFVLEINTVPGMTSNSLVPKAAMAGGFSFPDLLDHIVEESMASF 306 >UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteobacteria RepID=DDL_RHOP5 Length = 308 Score = 297 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 99/359 (27%), Positives = 165/359 (45%), Gaps = 60/359 (16%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++ V ++ GG S+E EVSL+S DA+++ F+V + + + Sbjct: 3 KRKHVAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVARD--------------- 47 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D ++HG GEDGS+QG+L Sbjct: 48 ----------------------------IATVLDQLRPDSALMMLHGHPGEDGSIQGVLE 79 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 +P+ S VLASA M KD+ K +++ AG+ +A +TL+R E P Sbjct: 80 TLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLSRDEIARGHVME------PP 133 Query: 182 LFVKPANQGSSVGVSKVTSEEQY--AIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 +KP GSSVGV +T + Q+ + + K++VE+ + G+E+ CAV+ + Sbjct: 134 YVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDKLLVEKYVAGKELTCAVVKGEPT 193 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EIV FY Y+ KY +K V+PA++ P + ++R + + A+ LGC G++ Sbjct: 194 DV---IEIVPMVRFYDYEAKYS-PGASKHVLPASLLPFVYQEVRRLTLAAHVALGCRGVS 249 Query: 300 RVDVFLTPE----NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA-LER 353 R D +V E+NT PG T S+ P+L +G+ + +L+ ++E A L+R Sbjct: 250 RADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGITFDELVQWMVEDASLDR 308 >UniRef50_Q60GK8 D-alanyl-D-alanine ligase n=2 Tax=Streptomyces RepID=Q60GK8_STRLA Length = 345 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 145/349 (41%), Gaps = 8/349 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+ I+ GG+S E +VSL S ++ A+ + +V+L+ G+ ++ + D Sbjct: 1 MRIVILCGGESPERDVSLASGSSVARALLERGHEVLLVDP-AAGEPVLAGPLHPGDVVDG 59 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P+ + + L D++F +HG GEDG +Q L A Sbjct: 60 FEVGKEPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEAA 119 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + F G+ A AA +K+ + +L AG+ + A G P+ Sbjct: 120 GVRFTGAGSTACAAAWNKERAQAVLAAAGVPVTERALWPAAADEVPKEVRPLVAAG-PVV 178 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 KP GSSV V + S + ++VE + GRE V+G Q Sbjct: 179 AKPVADGSSVSVHRADSLAELERLAPQMRADGGDLLVEPFLSGREFTVGVVG---GQVLP 235 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC--AGMARV 301 EI L++ + Y KY V PA I E +++ +A++A++ LG +R Sbjct: 236 VIEIELSTPLFDYAAKYQ-PGAVSEVCPARIPEEFASRLQQLALRAHEALGFGPHTYSRA 294 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 D E + E+N LPG T S+ P +G Y DL R++ LA Sbjct: 295 DFRCDAAGEPMCLEVNALPGLTATSLLPLGASGAGWTYADLAERIVSLA 343 >UniRef50_C0BG03 D-alanine--D-alanine ligase n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BG03_9BACT Length = 328 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 171/354 (48%), Gaps = 29/354 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K ++G+V GG ++E ++SL S K + D +D+S ++V L+ I+ ++ ++ N Sbjct: 2 MGKKKLGVVCGGFTSEFQISLLSGKTVFDNLDRSLWEVFLITIN---------SNEWVAN 52 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D+ H ++ Q G + +DVIF +HG GE+G L + Sbjct: 53 DDNGNHYSV--------------SKGDFTLQIGNDIVFLDVIFNSIHGAPGENGQLAALW 98 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + N+PF D SA +K +LR+ + A ++ R + I ++E +G Sbjct: 99 ELLNIPFSSCDSYTSALTYNKRDCLSVLREINIPTAKHFSIDRND--KIDLEKIEKAVGF 156 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNP 239 P FVK GSS GV KV + A+ AF+ D +VI+E ++GRE+ V + Sbjct: 157 PCFVKANRAGSSFGVFKVKKKSNLEQALQKAFQEDSQVIIESALEGREVSVGVAKLRGDI 216 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + EI+ ++F+ Y KY E ++ + PA I E +++ + + Y LG G+ Sbjct: 217 KVLPVTEIITENEFFDYAAKY--EGKSQEITPAQIPIEWKEEVEKRSKEIYHKLGLKGVV 274 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 R + + + EINT+PGFT S+ P+ A G+ ++ L+ L++ Sbjct: 275 RSEFIFV-DGVPHLLEINTVPGFTQKSIIPQQALAMGIELSEFFNLLLLEVLDK 327 >UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B634_THEAS Length = 316 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 167/351 (47%), Gaps = 46/351 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++V + +GG S E EVSL+S + + +A+ + V L+AD Sbjct: 1 MKVLVAYGGDSPEREVSLRSGEAVKEALSSLGWTV------------------EGLDADS 42 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 P + R D++F +HG GEDG+LQ +L Sbjct: 43 PLRVVER-----------------------ALSGAFDLVFVALHGGWGEDGTLQCLLDTH 79 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 +P+ G A ACMDK++T+ +L G+ + I + E+ + G L Sbjct: 80 RIPYTGPRWGACMACMDKEITRGVLLARGVRVPEGIPFD-GSMDQGVLLELLRRWGR-LV 137 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQAS 242 VKP GS+VG+ V + A+D AF +D +++VE+ I+GRE+ AV + P+A Sbjct: 138 VKPCRCGSTVGIGIVDHPSRLDRALDEAFRYDRRLVVERFIEGRELTVAVFDTPEGPKAL 197 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI S FY Y +KY + + + PA ++ + + + AV+AY+ +GC+ +RVD Sbjct: 198 PTVEIRPRSGFYDYSSKYT-KGMTEYLCPAPLSEQEAEAVARAAVEAYRAMGCSVYSRVD 256 Query: 303 VFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 V L E + E+NT PG T+ S+ PK A G + +++ R+ E +L Sbjct: 257 VRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDFPEMLRRICEASLA 307 >UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteobacteria RepID=DDL_VIBC3 Length = 329 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 175/353 (49%), Gaps = 29/353 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K + ++ GG S+EHE+SL SA I ++ + F V+ + + K+G + A YL Sbjct: 1 MTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLD 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + + +D + P +HG GE G +Q M Sbjct: 61 TN-------------------------SATLNSDKASYPIDFVVPCIHGFPGETGDIQSM 95 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +A +P++G ASA +K +K + P++ LT+ +I A+ Sbjct: 96 LELAGIPYLGCGPEASANSFNKITSKLWYDALDIPNTPYLFLTQNTPSSIDKAKQAFGHW 155 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 +FVK A QGSSVG KVT+E+Q A A++ AF F +V+VEQ +K RE+E + N Sbjct: 156 GSIFVKAARQGSSVGCYKVTTEDQIAPAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGK 215 Query: 239 PQASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAA-IAPEINDKIRAIAVQAYQTLGCA 296 S GE++ FY+Y+ KY A+ V+ A + + + I+ A + + + Sbjct: 216 LYISKPGEVIAPEGTFYSYEEKYSANSHARTVLEAENLTEKHKELIQTYAERVFIHMKLR 275 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 ++R+D FLT E ++ +NE+NT PG T ISM+PK+ + +G +++ + + + Sbjct: 276 HLSRIDFFLTQEGQIYLNEVNTFPGMTPISMFPKMLEHNGHRFSEFLAQCVTN 328 >UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsieae RepID=DDL_RICCK Length = 354 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 169/351 (48%), Gaps = 56/351 (15%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 K + +V GG SAE EVSL S+K + A+ + V + + + + + Sbjct: 54 GKKHIALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFKLQEI------- 106 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D++F +HGT GEDG L G+L Sbjct: 107 ------------------------------------KPDIVFNCLHGTYGEDGCLSGLLN 130 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P+ S VL+SA DK ++ +N+A I + +++ I + P Sbjct: 131 IMRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSDNIKI------EPMKRP 184 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +KP QGSS+G+ + E+ + A + F + +VI+E+ IKGRE++ AVL N +A Sbjct: 185 YVIKPITQGSSIGIEVIFEEDDFNFA-NYDFPYGDQVIIEKYIKGRELQVAVL---NGKA 240 Query: 242 STCGEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI +L + FY Y+TKY E A+ + PA I + DK+ + + Y+T+ C G AR Sbjct: 241 LGVLEIKLLKNRFYDYETKYT-EGFAEHLCPAPIPTNLYDKLLIESEKIYKTMNCKGPAR 299 Query: 301 VDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 V+ L N++ EINT PG T +S+ P++ +G+ +T+LI +I+ A Sbjct: 300 VEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKAA 350 >UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus Pelagibacter RepID=DDL_PELUB Length = 304 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 50/350 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K ++ I+ GG S E +SL + K + + K+ + V++ DK Sbjct: 1 MTK-KILILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKN-------------- 45 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DVIF +HG GEDG +Q +L Sbjct: 46 -----------------------------LSKNITSFKPDVIFNALHGQFGEDGYIQAIL 76 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S V+AS+ MDK+++K++ + +I +E L Sbjct: 77 ETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYIKFNHKKNKLNIIKLIEKNLKF 136 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP N+GSSV V + + + +++++E+ I GREI+ A++ N + Sbjct: 137 PVVVKPINEGSSVHVYICDKTNILKN-LKVLKSY-NEILIEEFIPGREIQVAIMNN---K 191 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + E+ FY Y+ KY K ++P ++ KI IA A++ +GC G+ R Sbjct: 192 SLGAIELEPRRKFYDYEAKYNSSAKTKHLIPVDLSKNNLAKITGIARAAHKIIGCKGVTR 251 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 D + + EINT PG T +S+ P++ + G+ + LI +++ A Sbjct: 252 SDFKFF-NGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWILKDA 300 >UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteobacteria RepID=DDL_ROSDO Length = 319 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 147/349 (42%), Gaps = 59/349 (16%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S E EVSL S + A+ +DVV + + D Sbjct: 23 KVAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLID----------- 71 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 D + +HG GEDG +QG+L Sbjct: 72 --------------------------------AGPDAVLNCLHGRWGEDGCVQGLLEWMG 99 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ S VLASA MDK +K AGL + P + A+ + + P V Sbjct: 100 VPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAAD------VRMGHVMQPPYVV 153 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP N+GSSVGV V + + +V+VE GRE+ V+G+ +A T Sbjct: 154 KPNNEGSSVGVYLVHEAANGPPQLSE--DMPQEVMVEAFAPGRELTTTVVGD---RALTV 208 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 +IV T +Y YD KY G+ VVPA I +I D A++A+ LGC G++R D Sbjct: 209 TDIV-TDGWYDYDAKY-KPGGSHHVVPADIPADIFDLCMDYALRAHHALGCRGVSRTDFR 266 Query: 305 LTPEN---EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +++ E NT PG T S+ P+ +G+ + L ++E A Sbjct: 267 WDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDA 315 >UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriaceae RepID=C7NBV7_LEPBD Length = 308 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 165/353 (46%), Gaps = 49/353 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVG++ GG S E EVSL++ IV +++ +++V + ID + + Sbjct: 1 MSKLRVGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEKEVF---------- 50 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 +D ++ +HG GEDG +Q +L Sbjct: 51 -------------------------------EKVKELNLDFVYIALHGVFGEDGRIQAIL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + + G V++SA CMDK+ +KR++ G+ IA + ++ + F ++ +LG Sbjct: 80 QSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGE--TVDFETIKKELGN 137 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 + VKP + GSS+GVS V ++E+ ++L F D + ++E+ + G EI V+ + + Sbjct: 138 RVVVKPNSGGSSIGVSFVENQEELEKGLELVFGMDKEALIEEVLHGVEISVPVI---DGK 194 Query: 241 ASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 I L D++ Y++KY + V E+ +I A +Y L C G A Sbjct: 195 VFPTIRIEALAGDYFDYESKYAKGGANEYVFE--FPEEVQAEINKFAKDSYYGLKCEGFA 252 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R+D + E E+NT PG T+ S+ PK + G Y + LIE +++ Sbjct: 253 RIDFMVVNEETPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTLDLLIESSIK 305 >UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LL63_9FIRM Length = 311 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 148/345 (42%), Gaps = 46/345 (13%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 V ++ GG S E ++S ++ I+ A+ + V + Sbjct: 8 VAVLMGGVSREADISRKTGTAILQALLSLGYHAVKV------------------------ 43 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 E+ +V+F +HG GEDG++Q +L ++ + Sbjct: 44 ------------------EYNPSCVLKQLKAVGAEVVFIALHGKYGEDGTIQSILELSKI 85 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 P+ GS V +SA MDK ++ R+ +DAG+ +A N + +E P+ +K Sbjct: 86 PYTGSGVSSSAITMDKIISSRVFKDAGVRMAFSKPYYLKNGIDTVAESIEKNFKFPVVLK 145 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 PA +GS++G+ V +E+ A+ F + +++ E + G+E AVL N +A Sbjct: 146 PACEGSTIGLEIVYEKEKLKEALKRVFAIESRILAEAYLDGKEFTIAVL---NGKALPII 202 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 +I S Y + +KY +VPA + D++ +A+ Y+ C+G+ R D Sbjct: 203 QICPHSGQYDFHSKYTS-GATDYIVPAPLPGAAADEMTRMAILGYEAAECSGVVRFDFRT 261 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + E N++PG T S+ PK A G+ + L ++ A Sbjct: 262 DKRGTPFLLEANSIPGMTETSLVPKAAAAIGMDFPSLCENILLKA 306 >UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FWP4_9CLOT Length = 293 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 156/343 (45%), Gaps = 50/343 (14%) Query: 10 FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL 69 GG S+E E+SL+S + +++D+ +++ + + ID Sbjct: 1 MGGISSEREISLKSGAGVFESLDREKYEPIKVVID------------------------- 35 Query: 70 RPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVG 129 + ++P VD F +HG GEDG +Q +L ++P+ G Sbjct: 36 -EKTDIITKIPDD----------------VDFAFLALHGKFGEDGCVQSVLETRDIPYSG 78 Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQ 189 L+SA CMDK+++K++ + +G+ A +IT+ + E ++G P+FVKP + Sbjct: 79 CGPLSSAMCMDKNISKKICKASGIPTADWITVKSIEEIDYDRIE---EMGYPVFVKPNSG 135 Query: 190 GSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVL 249 GSSV + + AV E D +V++EQ + G E +L + + I Sbjct: 136 GSSVATFMIKEKAGIEDAVRQGLEVDTEVMIEQYLPGEECTSFIL---DGEVFPTVSIKS 192 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 +F+ ++ KY ++GA V + + +K+ + + C RVD + Sbjct: 193 EQEFFDFEAKYSSDNGAVEEV-VYLEESLQNKLNGYSRMCWDAFNCRAYVRVDFII-SNG 250 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + E+NTLPG T S+ P+ A G+ Y+ L+ +LI +L+ Sbjct: 251 VPYVLELNTLPGLTATSLIPRSAAARGISYSQLLDKLISCSLK 293 >UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q872P6_NEUCR Length = 346 Score = 289 bits (741), Expect = 9e-77, Method: Composition-based stats. Identities = 99/358 (27%), Positives = 166/358 (46%), Gaps = 29/358 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + IV GG S E++VS+ + I +D++R+++ + I + + Sbjct: 6 KKNIAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAG------------ 53 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 H+ Q+P + G+ + D+ + +HG GE+G LQG + Sbjct: 54 -WYHLTDNDK-----QIPVDRNDFSVTLSTGEKI-QFDLAYISIHGNPGENGVLQGYFDM 106 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAG-LNIAPFITLTRANRHNISFAEVESKLGLP 181 LP+ SA +K ++R G + +A L R + + + LP Sbjct: 107 LGLPYTSCGFYTSALTANKGHCNPVVRSFGVVEVAKSRLLHRNQISALDPEALLFEFDLP 166 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD--HKVIVEQGIKGREIECAVLGNDNP 239 +FVKPA+ GSSV +KV S EQ AV+ A D +V+VE+ I+GRE C V+ + Sbjct: 167 VFVKPASGGSSVATTKVKSIEQVVQAVEDAMREDGNGQVLVEEFIEGREFNCGVIRDAEG 226 Query: 240 --QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 E++ S+++ Y+ KY + V PA + +++D+I+ + Y L C Sbjct: 227 WLHVFPITEVIPHGDSEYFDYNAKY--NGSSSKVTPAEVETQVSDRIKDTSTMLYDLLDC 284 Query: 296 AGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ R D PE + E+NT+PG T S+ P+ +A+G+ DL +IE AL Sbjct: 285 RGVVRFDYRYNPELYALYFLEVNTIPGQTPESIVPQQARAAGISTADLYHMVIECALA 342 >UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteobacteria RepID=C6XGZ9_LIBAP Length = 300 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 159/348 (45%), Gaps = 57/348 (16%) Query: 7 GIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAH 66 ++ GG S+E EVSL S K A++ + F V + +D+ Sbjct: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40 Query: 67 IALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 D+ F ++HG GEDG +Q +L + +P Sbjct: 41 ----------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKP 186 + S +LASA MDK +K+++ G+ + P I + R + + P +KP Sbjct: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKP 132 Query: 187 ANQGSSVGVSKVTSEEQ--YAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 GSS+G+ + ++ + ++ ++++EQ + G E+ C V+G+ + Sbjct: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDV 189 Query: 245 GEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 EI V SDFY+Y+ KY + V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 190 TEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Query: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 >UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYH7_9PROT Length = 307 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 157/352 (44%), Gaps = 61/352 (17%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R G++ GG SAE EVSL+S ++DA+ + D +GID Q W Sbjct: 13 RTGVLMGGTSAEREVSLRSGAAVLDALRAAGVD--AVGIDLQQNW--------------- 55 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + +D F +HGTLGEDG +QG+L + Sbjct: 56 --------------------------ADQIAKAAIDTAFIALHGTLGEDGCVQGLLEIMG 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS V+ASA CM+K + K++L AGL+ I + EV P+FV Sbjct: 90 IPYTGSHVMASALCMNKRLCKQVLGQAGLSTPMDIRI-----------EVTGPERYPVFV 138 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP +GSSVG+ +++S++++ L + + E + G EI +VL A Sbjct: 139 KPVAEGSSVGLHRISSQQEWQA---LNIQSPAAWMAEMPVNGVEIAVSVLA---GVALMP 192 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E+ S Y Y +KY + PA + E A +A GC G RVD+ Sbjct: 193 VEVAPKSGVYDYASKYTV-GATEYFCPARLPMETVRYCMDCAEKAVAACGCTGAPRVDMI 251 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + E VI EINTLPG T S+ PK +G+ + L R++E A + Sbjct: 252 VGSGGEAVILEINTLPGMTATSLLPKAAAVAGIDFQTLCLRILETASLEYGQ 303 >UniRef50_UPI0001AF4ABE D-alanine--D-alanine ligase n=1 Tax=Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191 RepID=UPI0001AF4ABE Length = 301 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 148/353 (41%), Gaps = 60/353 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K V ++ GG S E ++S+ + + A+ + +D ++ +D+ Sbjct: 1 MKK--VLVLCGGFSKERDISMVTGRACAAALKDAGYDAYIIDVDR--------------- 43 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F +HG GEDGS+QG+L Sbjct: 44 ----------------------------TLPEKLRQINPDVCFNALHGPYGEDGSVQGLL 75 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + +P+ S V AS+ MDK TK + G++IA + A ++ ++ Sbjct: 76 NIMGIPYTHSGVGASSIAMDKIKTKAIACQHGIHIAEDQLIDYATYKSM-------EIPF 128 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P +KP N GSS+ + + A+ ++ ++E+ IKGRE+ V N Sbjct: 129 PYVLKPVNDGSSIATYIFNTP-DAEKLSEQAWIYNTHAMMERYIKGRELTVTVFMNKPVT 187 Query: 241 ASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 EI+ FY + KY D G+ +PA I + + A+ + LGC G+ Sbjct: 188 V---TEIIPSTDHQFYNFHAKY-DTGGSLHSLPADIPDKAFNICMENALAMHILLGCRGI 243 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +R D L + EINT PG T S+ P+ +G+ +T L++ L++ A Sbjct: 244 SRSDFILEENTGNIFFLEINTQPGMTPTSLVPEQLAWAGISFTQLVSLLVDEA 296 >UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=2 Tax=Streptococcus pneumoniae RepID=C1C760_STRP7 Length = 321 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 165/349 (47%), Gaps = 36/349 (10%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ +++GG S E EVS SAK I ++ +DV+ + + + + + + Sbjct: 5 KKIVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGE---------- 54 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + S L + + +ID VD++F HG +GE+G LQ + V Sbjct: 55 -----IEKSERGLNKQKVEIGSGIIDVCR-----KVDIVFLATHGGIGENGKLQAIFDVE 104 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + + G+ L++A MDK ++K + G+ A + + R ++ P+ Sbjct: 105 KIDYTGNSFLSTAISMDKKLSKIVASSVGIKCASNLMVDRIQAND-----------FPIV 153 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G+ + +++Q+ I E VE+ IKGRE +LG Sbjct: 154 IKPIRSGSSKGIKILQNKKQFDIYYKEHPELGSF-FVEKYIKGREFSVGILGE---TVLP 209 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 EI + + FY Y+ KY A+ VVPA I+ ++ ++ A + ++ LG +R D Sbjct: 210 VIEIKVKNGFYDYNNKYTV-GAAEEVVPAKISEKLTHTLQKSAYKIHKALGFNVYSRTDF 268 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + + +V E N+LPG T S+ P+ +A+G+ + +L R+IEL+ E Sbjct: 269 IVDEKGDVYFIESNSLPGMTKTSLLPQEAKAAGIDFPNLCERIIELSRE 317 >UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=DDL_BACFN Length = 324 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 104/348 (29%), Positives = 166/348 (47%), Gaps = 28/348 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + IV GG ++E VSL+SA+ I IDK ++++ ++ + + +W V D Sbjct: 2 KRNIAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEM-EGRRWEVQLQDGSKTPVD 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 NG D + +HGT GEDG LQG + Sbjct: 61 RN----------------------DFSFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDM 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ VLA+A DK V + L+ G+ I+ + L + +S +V K+GLP Sbjct: 99 IRIPYSCCGVLAAAITYDKFVCNQYLKAFGVRISESLLLRQGQ--AVSDEDVVEKIGLPC 156 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP-QA 241 F+KP GSS GV+KV + EQ A+ AF +V++E + G E+ C Sbjct: 157 FIKPNLGGSSFGVTKVKTREQIQPAIAKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVV 216 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 E+V ++F+ YD KY + PA I+ E+ +++ + Y LGC+G+ RV Sbjct: 217 FPLTEVVTHNEFFDYDAKY--NGQVDEITPARISEELTRRVQTLTSAIYDILGCSGIIRV 274 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 D +T ++ + E+NT PG T S P+ +A+GL D++T +IE Sbjct: 275 DYIITEGEKINLLEVNTTPGMTATSFIPQQVRAAGLDIKDVMTDIIEN 322 >UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira RepID=C0QV33_BRAHW Length = 328 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 88/352 (25%), Positives = 165/352 (46%), Gaps = 49/352 (13%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAI---DKSRFDVVLLGIDKQGQWHVSDASNYL 58 + ++ ++ GG S+E EVSL+S +N+ A+ D+ + + +L+ + Sbjct: 16 KNKKIAVLHGGLSSEREVSLRSGQNVYKALTSFDEIKDNCILIDVK-------------- 61 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + I+HGT GEDG++QG Sbjct: 62 ---------------------------DSYELVKKLKENNIEYCYNILHGTSGEDGTVQG 94 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR-ANRHNISFAEVESK 177 +L N+ + G ++L SA CM+K TKR+ + + ++ A F+ L ++ Sbjct: 95 LLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFMLLKDVKEINDSGIKGSALT 154 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--G 235 PL +KP + GSSVGV + ++ ++ V + +E IKG+EI ++ Sbjct: 155 FNFPLILKPISDGSSVGVHLIKTKTEFESVVSSI-KDSENYFLEPYIKGKEITVGLVKQD 213 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ++N I ++ Y Y+ KY ++ +PA ++ EI +K+ +AY+ LGC Sbjct: 214 DENIYVFPILGINSKNEIYDYEAKYT-PGKTEMEMPAKLSKEIENKVIETCKKAYKVLGC 272 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 +G++R+D + +NEV + E+NT G TN S P + + L + DL+ ++ Sbjct: 273 SGLSRIDAIVGNDNEVYLMEVNTQGGMTNTSDIPAMAKHINLDFNDLVLYIL 324 >UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=A9WQG6_RENSM Length = 365 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 117/363 (32%), Positives = 179/363 (49%), Gaps = 46/363 (12%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + ++ GG S+EH+VSL S++ A V ID G+W V Sbjct: 34 KTIAVIGGGVSSEHDVSLASSEGTRAAAAALGHRVHFFLIDSDGEWSVDGVPG------- 86 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + L + D+ P+VHG GEDG LQG L Sbjct: 87 -------------------------TTAAWEKLRSCDLAIPMVHGAGGEDGVLQGFLETV 121 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR--ANRHNISFAEVE-----S 176 + + GS VL+SA +DK VTK + G+ AP +T+ ++ + + E + Sbjct: 122 GVSYFGSGVLSSAVGLDKQVTKLVAHTVGVRTAPGLTIDATLRDQLAETPDQAENLLKSA 181 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE--FDHKVIVEQGIKGREIECAVL 234 K+ LP+FVKP GSS G+SKVT + A AV LA + V++E ++G+E++ VL Sbjct: 182 KIELPVFVKPLRGGSSFGISKVTEQLNLADAVKLAAHGPVEQDVLIEPEVRGKEVDVGVL 241 Query: 235 G--NDNPQASTCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 + + C +++ S +F++ + KY + + +VPA I E + IRA A + Sbjct: 242 ELPDCSVIVGPCLQVLADSKEEFFSTEAKYSSTE-TRFLVPAPIGDEASAAIRAQAKAVF 300 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 LGC G+ARVD F+ + +NEINTLPGFT+ S P++W A+G+ Y L+ +IE A Sbjct: 301 TALGCRGLARVDFFVDDDGTATLNEINTLPGFTSHSQVPRIWAAAGVNYEGLVAIIIETA 360 Query: 351 LER 353 L R Sbjct: 361 LAR 363 >UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella RepID=DDL_FRAP2 Length = 297 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 55/350 (15%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K ++ +++GG S E EVSL+S K ++D++ +D V L Sbjct: 1 MQKEKIVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLD------------------ 42 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D D F +HG GE+G + +L Sbjct: 43 ------------------------ASSKDLVVKLLELNPDKCFIALHGEDGENGRVAALL 78 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + GS + + MDK ++K +L + LT ++ Sbjct: 79 ELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLT-------DRLVEADEISF 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP++ GSS+ KV S E+ A A + +V++EQ + G+EI A++ ND Sbjct: 132 PVAVKPSSGGSSIATFKVKSLEELENAYQQASKHG-EVMIEQWVTGKEITVAIVNND--- 187 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + I ++FY Y++KY + P+ + + ++R +A +AY LGC G AR Sbjct: 188 VYSSVWIEPLNEFYDYESKYS--GKSIYHAPSGLCEQKELEVRQLAKKAYDLLGCKGHAR 245 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 VD + + I EIN+ PG T S+ PK A G+ + + ++E A Sbjct: 246 VDFIYDDKGDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQA 295 >UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMF6_9DELT Length = 300 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 156/349 (44%), Gaps = 56/349 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG S E +VSL A I +A+ +V+ L + Q V Sbjct: 1 MRVLLIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELV------------ 48 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 D +HG GEDGS+QG+L Sbjct: 49 ------------------------------NKAREADAAIINLHGAPGEDGSIQGVLEDV 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 LP+ GS V S ++K ++K+ + GL R + P+ Sbjct: 79 GLPYQGSGVRGSFLALNKALSKQFYANHGLRTPKGGLYFPQGR--------LHHVPPPVI 130 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 KP GSS+ + ++E+ ++ H+++VE+ I G E+ CAVL N+ Sbjct: 131 CKPNQGGSSLDMQIFYNQEEMYSFLNQVDSE-HEILVEELINGHEVSCAVLDNEP---LP 186 Query: 244 CGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 I DF+ Y++KY D DGA + PA I+ E + I+ +++QA++ LG +R D Sbjct: 187 PILIQPVKGDFFDYNSKY-DPDGAVEICPAPISQEASRSIQEMSLQAHRILGLRHYSRSD 245 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L ++ + I E NTLPG T S+ PK Q +G+G+T+LI RL+ LAL Sbjct: 246 FMLDQQDNIYILETNTLPGMTRTSLVPKAAQQAGIGFTELIARLLSLAL 294 >UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp enzyme n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7C3_9GAMM Length = 309 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 162/352 (46%), Gaps = 54/352 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 R ++ GG +AE E+SLQS +N+ ++ + V + + Sbjct: 10 RFAVLMGGAAAEREISLQSGENVASVLEAAGCPVTRIDPAVEQW---------------- 53 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 L +D +F ++HG GEDG LQG+ V N Sbjct: 54 ----------------------------ADQLSDIDFVFNLLHGPGGEDGVLQGLFDVMN 85 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP+ GS VL SA MDK TK+L GL F LT + ++++ + G LFV Sbjct: 86 LPYSGSGVLGSALTMDKARTKQLWSGMGLPTPDFTLLT----ADTDWSDLIERHGT-LFV 140 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSS+G+SK ++ EQ A A + +I E + G E ++LG+ +A Sbjct: 141 KPALEGSSIGMSKASTPEQLEAAWKRARAYKGGIIAECFVAGEEYTVSILGD---RALPA 197 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I S+FY +D KY+ ++ P+ + ++ A+A++A+ + A RVDV Sbjct: 198 IRIEPASEFYDFDAKYVSDN-TGFFCPSGLTASDEAELSALALRAFYAVDAAVWGRVDVM 256 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE-RHA 355 + E+NT+PG T+ S+ P +A + D ++ + L++E R+A Sbjct: 257 RDISGAWQLLEVNTIPGMTSHSLVPMAARADSMTLIDFLSEIYRLSMEARYA 308 >UniRef50_C3WFS8 D-alanine-D-alanine ligase n=6 Tax=Fusobacterium RepID=C3WFS8_FUSMR Length = 288 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 86/346 (24%), Positives = 145/346 (41%), Gaps = 61/346 (17%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ + GG S+E EVSL+S I++++ +D + + + Sbjct: 1 MKIAVFMGGISSEREVSLRSGAAILESLQAQGYDAYGVDVTE------------------ 42 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + D+ + HG GE+G+ QG+L + Sbjct: 43 ------------------------KNLVSAFTENEYDLAYIAFHGGYGENGTFQGLLDML 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 P+ GS + SA MDK TK + G+ A ++ VE P+ Sbjct: 79 GKPYTGSGAMESAITMDKAYTKAVANSVGIKTAK------------TYNCVEEIKDFPVV 126 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 VKP+ GSSVG+ ++E+ A+ K ++E+ I+G E+ VL N + Sbjct: 127 VKPSRDGSSVGIYFCNTQEEVREALRAL--EGRKPLIEEMIQGEELTVGVL---NGEGLG 181 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 I+ + FY Y++KY G+ PA I DK AV+ + +G G++R D Sbjct: 182 VLRIIPKNKFYDYESKY-AAGGSIHEYPAKIDKAAYDKAMENAVKIHNVIGLKGISRSDF 240 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 L + EV E+NT PG T S+ P L G + DL+ +++ Sbjct: 241 ML-KDGEVYFLEVNTCPGMTKTSLIPDLGTLKGYTFDDLVKIMVDT 285 >UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae RepID=DDL_VIBVY Length = 331 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 103/355 (29%), Positives = 168/355 (47%), Gaps = 28/355 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-SRFDVVLLGIDKQGQWHVSDASNYLL 59 M + V ++ GG S+EHE+SL S++ + + +V+ + I +G + + YL Sbjct: 1 MMR-NVLLLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLD 59 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + + D I P +HG GE G +Q + Sbjct: 60 IHTKSVKSDEFNESIDI-----------------------DFIVPCIHGFPGETGDIQSL 96 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 +A +P++G AS+ +K +K G+ P++ LT N + + Sbjct: 97 FELAGIPYLGCGPEASSNSFNKITSKLWYDAIGIPNTPYLFLTENNEESHQLSREAFDKW 156 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 LFVK A QGSSVG VT+ EQ + A+D AF F H+V+VE+ +K RE+E + N Sbjct: 157 GKLFVKAARQGSSVGCYSVTNIEQLSDAIDKAFGFSHQVLVEKAVKPRELEVSAYEMNGQ 216 Query: 239 PQASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPA-AIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY+YD KY + V A + + I+ + + ++ + Sbjct: 217 LHISKPGEIIAPDGAFYSYDEKYSAGSHSITEVEAKNLTEQQLATIQLCSEKVFRQMNLR 276 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 ++R+D FLT E E+ +NE+NT PG T ISM+PK+ Q +G + + + IE +L Sbjct: 277 HLSRIDFFLTSEGEIYLNEVNTFPGMTKISMFPKMLQHNGHKFHEFLADCIERSL 331 >UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=DDL_PORG3 Length = 330 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 156/353 (44%), Gaps = 29/353 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+K V ++ GG S EH VSL+SA I+ + F L+ I++ + Sbjct: 1 MKKPIVAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERDRWSVRVSEQREVPL 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + L D + +HGT GE+G LQG L Sbjct: 61 DKNDFSFDLDDE-----------------------RIRFDYAYITIHGTPGENGLLQGYL 97 Query: 121 RVANLPF-VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 + +P+ G D L + +K V R L G+ IA + LT + A++ +++G Sbjct: 98 DMIGIPYNTG-DTLVESLTFNKYVCNRFLSGFGIRIADSMRLTGRD-TQPDVADLTARMG 155 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA-VLGNDN 238 LPLFVKP GSS+ +KV Q A+ AF +V++E+ I G E+ C L Sbjct: 156 LPLFVKPNVGGSSIATTKVVEAAQLLPAIGQAFSEGEEVMIERLICGTEVTCGAFLRKKE 215 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A E+V ++F+ +D KY + + PA I+ E I+ + + Y+ L G+ Sbjct: 216 VVALPVTEVVAHNEFFDFDAKY--NGAVEEITPARISDEATRLIQTMTARIYELLNARGI 273 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 RVD + + + E+NT PG T S P+ +A+ + +++ +I L Sbjct: 274 IRVDYIIEADGIPTLLEVNTTPGMTPTSFIPQQVRAAEMDMKEVLCTIIRDGL 326 >UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirillum sp. Group II RepID=A3ERR6_9BACT Length = 303 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 155/343 (45%), Gaps = 53/343 (15%) Query: 10 FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL 69 GG S E VS S K +++A+ ++ + + D H L Sbjct: 1 MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPV-----------------EAGPDLFHTLL 43 Query: 70 RPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVG 129 + DV F HG GE+G+LQG L V +P+ G Sbjct: 44 --------------------------RTSPDVCFLATHGGHGENGALQGCLEVLGIPYTG 77 Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQ 189 S VL SA M K ++ L R GL++ + + R + LP VKP + Sbjct: 78 SGVLGSALGMSKSASRALFRQGGLDVPETVAIESGERLTPD----KIPFPLPFMVKPESA 133 Query: 190 GSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVL 249 GSS+GV++V A+ A + +++VE + GRE++ A+L + + EIV Sbjct: 134 GSSIGVTRVDHFPDLPQALLEAEKHSSRILVEPFLPGREVQSAIL---DGRYLGAIEIVP 190 Query: 250 TS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP 307 S FY Y +KY + ++ + PA + ++ ++ ++A+ L G+AR+D + P Sbjct: 191 DSSEPFYTYASKYQ-KGKSRHIFPAPLTSDVASRLEEATLRAFGLLELRGVARMDTLVLP 249 Query: 308 ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + VV+ E+NTLPG T S+ P++ + GL + DL+ ++ A Sbjct: 250 DGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSA 292 >UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HX62_9BACT Length = 323 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 113/348 (32%), Positives = 157/348 (45%), Gaps = 53/348 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG S E E+S S K + +A+ K+ F+V Sbjct: 13 RVAVLAGGDSDEAEISRVSGKAVAEALRKAGFEV-------------------------- 46 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + DV F HG GE+G+LQG L Sbjct: 47 -----------------GEFEADRSLAKTLTDFSPDVAFLATHGGGGENGTLQGFLETMK 89 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA M K ++ L R+ GL + LT A+R SF P V Sbjct: 90 IPYTGSGVLASAIGMSKMRSRALFRERGLAVP----LTYAHRTEESFNPGYISFDPPYMV 145 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KP GSS+GV +V E A AV A + H V+VEQ I GREI+ A+L + Sbjct: 146 KPEAAGSSIGVKRVLRREDLADAVSEAGRYSHWVLVEQLIPGREIQSAILS---GRYLGA 202 Query: 245 GEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ FY Y +KY+ G++ + PA + P+ + ++ I ++A + L G R+D Sbjct: 203 IEIIPDKAEPFYTYASKYV-PGGSRHISPAPLTPDESSELSRITIEACRVLDVRGACRLD 261 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L E VI EINTLPG T S+ P++ GL +TDLI LI A Sbjct: 262 TILNDEGVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLIIELIATA 309 >UniRef50_C0VTV5 D-alanyl-alanine synthetase A n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VTV5_9CORY Length = 315 Score = 277 bits (708), Expect = 6e-73, Method: Composition-based stats. Identities = 129/331 (38%), Positives = 188/331 (56%), Gaps = 26/331 (7%) Query: 28 VDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQL 87 +D +D DV +GI + G W DP H+ ++ + H++++ Sbjct: 1 MDHLDD--VDVFPVGITRDGTW----------TTGDPRHMTETLPEVTVEREVFLHKNEI 48 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + L TVDVIFP++HG GEDG++QG+ ++ +P+VG+ VLASA MDK TK+L Sbjct: 49 RLLETSEVLATVDVIFPVLHGLNGEDGTIQGLFELSGVPYVGNGVLASACGMDKQYTKKL 108 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AGL I + L + L P++VKPA GSS+G+S+V A Sbjct: 109 CKLAGLPIGKDLVLEGGEE------FIPGTLNFPVYVKPARGGSSIGISRVEDVSGIDEA 162 Query: 208 VDLAFEFDHKVIVEQGIKGREIECAVLG--NDNPQASTCGEIVLTSD----FYAYDTKYI 261 + LA E D KVI+E+ IKG E+EC VL + A+ E++ T D FY + KY+ Sbjct: 163 IRLARESDPKVIIEEEIKGIEVECGVLEYPDGRVVAAAPAELIGTEDGEAGFYDFSAKYL 222 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 D + +PA ++ E +++ IAVQ ++ L C G+ARVD F+T VINEINTLPG Sbjct: 223 DGQVSAH-IPARLSEEETARVKEIAVQTFKALNCNGLARVDFFVTEHG-PVINEINTLPG 280 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALE 352 FT ISMYP+++QA G+ Y DL+ LIE AL Sbjct: 281 FTPISMYPQVFQAEGISYGDLLHILIEQALA 311 >UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomycetales RepID=A0LWW5_ACIC1 Length = 333 Score = 277 bits (708), Expect = 6e-73, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 153/355 (43%), Gaps = 50/355 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V ++ GG S E EVSL SA+ +++A+ + Sbjct: 6 HVLVLAGGVSFEREVSLASARRVIEALRRLG----------------------------- 36 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 V + D +F +HG+ GEDG+L+ +L +A Sbjct: 37 --------------VDVDLVDVDASVLDRLTADPPDAVFIAMHGSEGEDGALRELLDLAG 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS----FAEVESKLGL 180 +P+VG+ + DK V K +L+ AG+ I ++ ++ +LGL Sbjct: 83 VPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFSQTAIRDLGGHQLLDRCVRRLGL 142 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-- 238 PL VKPA GS++GV+ V +A A+ F +D +VEQ + G E+ +V+ +D+ Sbjct: 143 PLVVKPARGGSALGVTIVREATAFAHALVTCFAYDTVALVEQYVVGTELAISVVEDDDGT 202 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P+A EI + Y +Y + VPA I D+ +A++A+Q LG + Sbjct: 203 PRALPPVEIRPVDGMFDYAARYT-AGMTEYHVPARITETARDRAVDVALRAHQALGLRDL 261 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +R DV +T ++EV+ E N PG T S+ P G+ L L+ A R Sbjct: 262 SRTDVIVTADDEVLYLETNVAPGMTPTSLLPMAAAEVGIDLGTLCRDLLVRAATR 316 >UniRef50_A4Y6E2 D-alanine--D-alanine ligase n=18 Tax=Shewanella RepID=DDL_SHEPC Length = 337 Score = 276 bits (707), Expect = 9e-73, Method: Composition-based stats. Identities = 112/355 (31%), Positives = 180/355 (50%), Gaps = 26/355 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAI-DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 M ++ + ++ GG SAEH++SL SA ++ +F V+ + +DK GQ+ + + L Sbjct: 1 MSRINLLLLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCEL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + A VD + P +HG GE G +Q Sbjct: 61 TNNREIRFRDETKAP----------------------WPVDYVIPCIHGYPGETGDIQSY 98 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 + LP+ G + AS+ C +K K G+ P+I L + + IS A+ Sbjct: 99 FNLIQLPYFGCESEASSNCFNKITAKMWFSALGIPNTPYIFLHQYDDEAISQAQTALANW 158 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 +F+K A+QGSSVG KV + A + AF + V+VE+ IK RE+E AV N Sbjct: 159 GSIFIKAASQGSSVGCYKVDDSSKVAQVLKDAFGYAPYVVVEKTIKARELEVAVYEYNGE 218 Query: 239 PQASTCGEIVLT-SDFYAYDTKYIDEDGAKVVVPA-AIAPEINDKIRAIAVQAYQTLGCA 296 A+ GEI+ + FY +D KY A+ V A ++ E++++IRA A++A++ + Sbjct: 219 IVATLPGEIICDTNTFYTFDEKYAKSSKARTDVVAKDVSVELSEQIRAYAIKAFKGMKLR 278 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 ++R+D FLT ENE+++NEINT PG T ISM+PK+ Q G +T+ ++ +I L Sbjct: 279 HLSRIDFFLTAENEILLNEINTFPGSTPISMFPKMLQNHGHDFTEYLSLVINSQL 333 >UniRef50_B8DLD4 D-alanine--D-alanine ligase n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLD4_DESVM Length = 408 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 105/390 (26%), Positives = 166/390 (42%), Gaps = 40/390 (10%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 K+RV + FGG+S EH+VS+ + ++ A+D ++++ V + +D+ G W + Sbjct: 4 GKIRVAVFFGGRSPEHDVSIVTGLQVIQALDAAQYEPVPVYVDRCGVWRTGEKLLDRATY 63 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT---VDVIFPIVHGTLGEDGSLQG 118 PA A A SL PGK + P DV P HG GEDG +QG Sbjct: 64 I-PARDADGLPAVSLEIAPGKGGMLVEQTSKLFGKPRRIPFDVAIPAFHGPYGEDGDMQG 122 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN----RHNISFAEV 174 + +P+ G VLASA MDK TK+ L G+ + P L + Sbjct: 123 LFEAVGIPYTGMRVLASAIFMDKAATKQALAGTGIPMLPCAVLRKPVGGLLPPRADIEAA 182 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAV 233 + + LP +KPA+ GSS+GV+KV S E + F D IVE + G E +V Sbjct: 183 LAGITLPGCLKPAHLGSSIGVAKVDSIEDIEAVLPGLFRNDTVAIVEPYLDGCVEYNISV 242 Query: 234 LGNDNPQASTCGEI-VLTSDFYAYDTKYIDEDGA-------------------------K 267 + A++ E S+ + KY+ G Sbjct: 243 RRDGEGHATSAIERPKRDSELLDFRQKYLSSGGKTGSKTGGMGGTKSAGDSGSAGMLSLT 302 Query: 268 VVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNIS 326 + + + +IR AV+ Y G G R+D +EV +NE+N +PG + + Sbjct: 303 REINPDLPESLEGRIRDFAVRTYAAFGGTGAPRMDFMYDATRDEVWLNEVNPIPG--SFA 360 Query: 327 MYPKLWQASGLGYTDLITRLIEL--ALERH 354 + S + +T L++ +I+ A+ RH Sbjct: 361 FFLWEAAESPIRFTRLLSLMIDEARAMARH 390 >UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT Length = 332 Score = 273 bits (699), Expect = 7e-72, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 164/353 (46%), Gaps = 32/353 (9%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 K + IV GG S+EH+VS++S + + DK R+++ ++ + K W+V L Sbjct: 4 SKRTIAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDV-KGIDWNVELPDGSLAPI 62 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D D + +HG GE+G +QG Sbjct: 63 DKN----------------------DFSFVMNGERVEFDYAYITIHGQPGENGVMQGYFD 100 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + +P+ VL A DK V LR G+ +A I L R ++ AE+E +LG+P Sbjct: 101 LIQIPYSTGGVLVEALTFDKYVLNNYLRGFGIKVADSILLRRGEEYDE--AEIEKRLGMP 158 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQ 240 FVKPA GSS GVSKV + +Q A A+ +AF +V++E + G EI V D Sbjct: 159 CFVKPAADGSSFGVSKVKNIDQLAPALRVAFMQSDEVMIEAFMDGMEISQGVYKTKDKAV 218 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 E+V +++F+ Y+ KY + + PA ++ E ++ A Y L G+ R Sbjct: 219 VFPATEVVTSNEFFDYNAKY--NGQVEEITPARMSDETAKRVAAETSCIYDILHANGIIR 276 Query: 301 VDVFL--TPENE--VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +D + + + + + EINT PG T S P+ +A+GL ++++ ++E Sbjct: 277 IDYIISKDKDGKDVINMLEINTTPGMTVTSFIPQQVRAAGLDIKNVLSDIVEN 329 >UniRef50_A1SMF1 D-alanine--D-alanine ligase n=1 Tax=Nocardioides sp. JS614 RepID=A1SMF1_NOCSJ Length = 311 Score = 273 bits (699), Expect = 7e-72, Method: Composition-based stats. Identities = 119/350 (34%), Positives = 164/350 (46%), Gaps = 44/350 (12%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV +V GG+S EH+VSL SA + +D R+DVV L I + G W D L A Sbjct: 2 RTRVAVVGGGRSCEHDVSLASAAAVAAGLDPHRYDVVRLTIGRDGAWRDGDRPVGLAAA- 60 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + L DV+FP+ HG GEDG+L + + Sbjct: 61 ------------------------------VEVLRRCDVVFPVAHGPHGEDGTLAALCEL 90 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A +P+VGS V A A MDK TK + T A R + + P+ Sbjct: 91 AGVPYVGSGVRAGALAMDKWATKLVAAAL-------GIATAAGRLVTAATATQETWTGPV 143 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNPQ 240 VKP GSS+GV+ V+ A+ A D + +VE+ + GREI+ AVL + Sbjct: 144 VVKPVAAGSSIGVAFVSEPASLPPALATALALDDRALVEELVTGREIDVAVLRRADGAVV 203 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 AS EIV + +D KY A VPA + + AV Y LGC+G+AR Sbjct: 204 ASPPLEIV-ADGLFDFDAKY--GGRADFRVPAVLDEVDAKALEGAAVATYDALGCSGVAR 260 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 VD FLT V+NE+NT+PG T S P+++ A+GL Y DL+ L+ A Sbjct: 261 VDFFLTDTG-PVLNEVNTVPGMTEHSQVPRMFAAAGLPYPDLLDELVCGA 309 >UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B1ZUU9_OPITP Length = 311 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 107/359 (29%), Positives = 163/359 (45%), Gaps = 52/359 (14%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ + + GG S+E EVSL S + A++KS F V ID Sbjct: 1 MDSPVIAVFSGGTSSEREVSLGSGQACAAALEKS-FRVERFQIDAD-------------- 45 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 A P +H V+F +HGT GEDG +Q +L Sbjct: 46 ------------ALPAGLDPQRH-----------------VVFSTLHGTFGEDGGMQRLL 76 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 A + + G D ++SA MDK +TK G+ + P +T A + +V + G Sbjct: 77 DAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKKPRP--EQVIEQFGE 134 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 + VKP +GSSVG++ V S E+ +D+ + + I+E+ I GRE+ VL N + Sbjct: 135 RVVVKPNAEGSSVGLNLVGSREELTRVLDVIQ--NGRWIIERRIFGRELAVGVL---NGR 189 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 A EI S Y Y +KY + + PA + + KI+A A A+ GC AR Sbjct: 190 AMGVVEIRPKSGVYDYASKYT-KGMTNYLAPAPLDAALTQKIQAAAQTAFAACGCRDYAR 248 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 VD L ++E+ + EINTLPG S+ P + G+ +T L+ ++ A++R A A Sbjct: 249 VDFILGDDHELYLLEINTLPGMKETSLLPMSARCEGIDFTALVKAMVTPAVQRFHAARA 307 >UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GNT9_STRCL Length = 312 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 151/354 (42%), Gaps = 49/354 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV I+ GG S E + S SA A+ + + ++ I W Sbjct: 3 MRVAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFW-------------- 48 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + LP + F HG EDG LQG+L V Sbjct: 49 ------------------------------KRLPDFEAAFIAGHGWYAEDGKLQGLLEVM 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 LP+ GS VLAS+ M K K L+ G+ P+ ++R + V + +GLPLF Sbjct: 79 GLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGA-TAAQISRVTAGIGLPLF 137 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEF-DHKVIVEQGIKGREIECAVLG-NDNPQA 241 KPA+ G S V S++ + E+ + I E + G VL + +A Sbjct: 138 AKPASNGESFEAGIVRSDKDLRELLAEEGEYSSDEFIAEPFLTGNTFTVGVLDIDGKIEA 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 E V +FY + K D + PA I + D+++ +AV+ + GC G+ARV Sbjct: 198 LPVLEAVSLREFYDSEAK-QDPSLHEYRCPAPIPDSLRDRMQELAVRVFTVCGCRGVARV 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D L+ + V+ E+NT+PG T + +ASGLGY ++ +++ A +R A Sbjct: 257 DFMLSED-RPVVLEVNTVPGLTLQGNLAAMAKASGLGYRRVVEIMLQSAFDRPA 309 >UniRef50_Q6A5C1 D-alanine--D-alanine ligase B n=4 Tax=Propionibacterium acnes RepID=Q6A5C1_PROAC Length = 327 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 142/355 (40%), Gaps = 49/355 (13%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 V ++ GG S + ++SL+S + + A+ + +VV ID Sbjct: 17 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSA------------------- 57 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 V+FP++HG LGE+G+L +L++ + Sbjct: 58 ------------------------LIETLRANDGAVVFPMLHGGLGENGALLEVLQLMGI 93 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF----AEVESKLGLP 181 P+VGS DK + R + AG+ + L + + K GLP Sbjct: 94 PYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRELGAQTVMRSIAEKFGLP 153 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP-Q 240 + VKPA GSS+GV+KV + AV A+ +D V+VE+ I G E+ ++ + Sbjct: 154 VIVKPARGGSSLGVTKVDGVDDLPQAVANAYAYDDMVVVEEFIVGTELAIGMITTSEGTR 213 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI Y Y Y ++ PA I+ A+A + L +G++R Sbjct: 214 VLPAVEIRPVGGVYDYSAMYT-GGETRLTAPADISDTAAQTATAMARVVQKELDFSGISR 272 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 VD + V E PG T S+ P +A+GL ++ +RL++ H Sbjct: 273 VDAIVDESGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDDVARNHG 327 >UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia RepID=DDL_WOLTR Length = 339 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 91/367 (24%), Positives = 159/367 (43%), Gaps = 70/367 (19%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L + I+ GG S E ++SL S K + A+D ++ + + ++ Sbjct: 17 LTITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSN----------------- 59 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 D+ F +HG GEDG +QG+L + Sbjct: 60 --------------------------TAEKLKKINPDLAFIALHGPYGEDGCIQGLLEIL 93 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + + S V+ASA M+K ++K + R G++ ++R + + K+ P Sbjct: 94 GIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRGDILKNNI-----KIDYPYV 148 Query: 184 VKPANQGSSVGVSKVTSEEQ---YAIAVDLAFEFD-------------HKVIVEQGIKGR 227 +KP N+GSS+GV S E + D +I+E+ I G Sbjct: 149 LKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGIEEEEPVWITRDLMIIEEYIPGI 208 Query: 228 EIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAV 287 E+ AVL ++ A+ EI + FY Y KY A+ + PA I I + A+ Sbjct: 209 ELHTAVLLDE---AAGTMEIRPKNKFYDYKAKYT-NGFAEHIFPAEIPDNIYEMTLEHAL 264 Query: 288 QAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQAS-GLGYTDLITR 345 + ++ LGC ++R D P +N + + EINT PGFT +S+ P++ + + G+ + +L+ Sbjct: 265 KVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLVPEIAKLTKGIDFNELVKI 324 Query: 346 LIELALE 352 +IE +L+ Sbjct: 325 IIEDSLQ 331 >UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31F0A Length = 309 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 154/349 (44%), Gaps = 52/349 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ + +GG+S E EVS +S + A+ + V L+ + Sbjct: 1 MKALVAYGGRSLEREVSARSGQQAAKALRQLGHAVELIDVGAD----------------- 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + D +F +HG GEDG++Q +L + Sbjct: 44 --------------------------FVDVVQRAEPDFVFIALHGVGGEDGTVQDLLEIL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES----KLG 179 +P+ GSD LASA C+DK K + G+ P+ + T+ + + + Sbjct: 78 QVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQAFADYGAGKTLDALWQQFD 137 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 VKPA QGSS G+S V Q AV A +D +V++E+ + GRE+ VLG +D Sbjct: 138 GRAVVKPARQGSSFGLSVVQERAQLGGAVLGAMSYDDRVLLERYVPGRELAVTVLGRSDA 197 Query: 239 PQASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+ EIV+ + ++Y++ Y + A + ++ +RAIA +AY GC Sbjct: 198 PEPLPVVEIVMASEEYYSFQAHYEIGQSEVRL--AGLPDAVDAHVRAIAAEAYSAAGCRD 255 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 ARVD+ L + E + EINT+PG T P + +GL + LI R+ Sbjct: 256 FARVDIRLEGD-EPWVLEINTIPGLTETGPTPLAAEHAGLTFAQLIERI 303 >UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomycetales RepID=D1BRV4_XYLCX Length = 349 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 98/355 (27%), Positives = 168/355 (47%), Gaps = 50/355 (14%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 LRV ++ GG S E +VSL+S + + +A+ DV + +D Q ++ + Sbjct: 37 LRVVVLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQLLRYLDE---------- 86 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 DV++P++HG GEDGSL+ +L +A Sbjct: 87 ---------------------------------HRPDVVWPLLHGAGGEDGSLRDVLELA 113 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA----EVESKLG 179 +P+VG+ AS DK + K L+ AGL ++TL + ++ V + G Sbjct: 114 GVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQELFRDLGAQGVLSIVAERFG 173 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDN 238 LP+ VKP GS++GV++VTS++ A A+ F + ++E+ + G EI +V+ G D Sbjct: 174 LPVVVKPTRGGSALGVTRVTSKDGLARAMVDCFAYGDSALIERAVDGVEIAVSVIDGMDG 233 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P A EI++ Y +D +Y + + PA ++P+ + +AV A+Q L + Sbjct: 234 PVALPAVEIIVDGP-YDFDARY-NPGRVEYFAPARLSPDQAAHVAGVAVAAHQALDLRHL 291 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +R D+ L + + E+N PG T S+ P+ A+G L +++E A R Sbjct: 292 SRTDLILQTDGTAQVLEVNVAPGMTETSLLPQAAVAAGHDLGTLYRQVVEHAALR 346 >UniRef50_Q96RQ3 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial n=92 Tax=cellular organisms RepID=MCCA_HUMAN Length = 725 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 56/340 (16%), Positives = 126/340 (37%), Gaps = 31/340 (9%) Query: 22 QSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG 81 + +NI + +R ++ + + V + Y + H+ + A S+ P Sbjct: 44 ATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAYSIGPAPS 103 Query: 82 KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDK 141 + + ++ + G L E+ + + + F+G A K Sbjct: 104 QQSYLSMEKIIQVAKTSAAQAIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIK 163 Query: 142 DVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSE 201 +K ++ AG+ + ++ + E ++G P+ +K G G+ V SE Sbjct: 164 STSKSIMAAAGVPVVEGY--HGEDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSE 221 Query: 202 EQYAIAVDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFY 254 +++ ++ A D +++E+ + R +E V G+ + A Y Sbjct: 222 QEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNA-----------VY 270 Query: 255 AYDTKYIDEDGAKVVVPAAIAP----EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 ++ + + ++ A AP E+ K+ AV+A + + G V+ + ++ Sbjct: 271 LFERDCSVQRRHQKIIEEAPAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN 330 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +G TDL+ + +A Sbjct: 331 FCFMEMNTRLQVEH----PVTEMITG---TDLVEWQLRIA 363 >UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Streptomyces roseosporus NRRL 15998 RepID=UPI0001AECDB6 Length = 320 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 159/350 (45%), Gaps = 47/350 (13%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 VG+++GG S E SL S K DA+ F+ +L+ Sbjct: 11 VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLID----------------------- 47 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 + Q + + +DV +HG GEDG +QG+L + + Sbjct: 48 ---------------------TAEPQAIESIQKIDVALIALHGPGGEDGKIQGLLEILGV 86 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 P+ GS VLASA M K K+L+ GL+ +ITL + + VES +G P+F+K Sbjct: 87 PYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITLDPSLTSDEMSKVVESHVGWPVFIK 146 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH-KVIVEQGIKGREIECAVLG-NDNPQAST 243 P+ G S+G S +A + D+ + +VE+ + GR V+ + P+A Sbjct: 147 PSAGGGSLGAGIGRSPSDFAHMLADLNRQDYLEYLVEEYVPGRPCSVGVIETSGRPEALP 206 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 ++ +FY Y K+ + P+ + ++ ++++ AV+ + G G++RVD Sbjct: 207 VHDVETDREFYDYAAKHDPSKRIEN-CPSILPKDVTERLQEEAVRIHMLTGAHGVSRVDF 265 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + VI EINT+PG +++ + +A+G+ Y L+T +++ A R Sbjct: 266 IVDDNGRSVILEINTVPGLSDMGNLATMAKAAGMSYPALVTAVLKTAFNR 315 >UniRef50_Q6ME77 Putative D-alanine--D-alanine ligase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6ME77_PARUW Length = 798 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 143/359 (39%), Gaps = 19/359 (5%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG S E +SL SA++++D + +++ + +D Q +++ + N Sbjct: 3 KIALICGGPSLERGISLNSARSVLDHLASEFIEIIPIYVDYQNFFYLISTAQLYSNTPAD 62 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 L+ SA + + + L +D++FP++HG GEDG LQ +L + Sbjct: 63 FDFKLKKSAQ-----------AMNREEFKKILRNIDLVFPVIHGIFGEDGELQKILEEID 111 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP-LF 183 +PFVG+ A A K ++L + + + L Sbjct: 112 VPFVGTGSQACAEMFCKYHASQILHQNRFPAFMKLEVCPETNDLAPIKSFFEQHQLKRAI 171 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD--HKVIVEQGIKGREIECAVLGNDN--P 239 VKP GSS+GV+ V + E + + + + ++E +G E VL N P Sbjct: 172 VKPTMGGSSIGVTSVQTPEDAFEKIKMLCQQGIAKRALIEPFCEGTEFTVVVLQNQQSKP 231 Query: 240 QASTCGEIVLT---SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A EI ++ + Y KY+ + PA I IR A + Sbjct: 232 VALIPTEIEMSYQNHQIFDYRKKYLPTNQTTYHTPARFDETIIQGIRQKAEAIFTLFHMR 291 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 AR+D +L + + ++N + G S + GL + D+ +I A R Sbjct: 292 DFARLDGWLLNDGTIYFTDLNPISGMEQNSFLFRQASLLGLTHRDVFRLIITSACLRWK 350 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 84/427 (19%), Positives = 147/427 (34%), Gaps = 75/427 (17%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNI-VDAIDKSRFDVVLLGIDK-QGQWHVSDASNYL 58 +EK +V ++FGGK+AE +VSL S N+ + + S++ + K W + A Sbjct: 362 LEKKKVHVLFGGKNAERQVSLMSGTNVWLKLLRSSKYHPIPFFYGKNDLIWQLPYAYTLD 421 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTV----------------DVI 102 ++ H L A++ + T + Sbjct: 422 HTVEEILHRCLAREASNKKLPNYFNSICEQLGIPYNFQETPSSMCLQDFYQLSASNQAFV 481 Query: 103 FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDA---GLNIAPFI 159 F +HG GE+G LQ L L + GS S+ CMDK +T +++ + P Sbjct: 482 FIAMHGGEGENGILQKELEKNQLYYNGSCAKTSSICMDKFLTGQVIEQLKHPNIFSLPKE 541 Query: 160 TLTRANRHNISFAEVESKL--------GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA 211 + AN S K L +KP G S G+ + S Sbjct: 542 CVEAANLFGQSTKYFLEKWNKICISLRSNRLIIKPRQDGCSAGIVLLESGADLEKYFAFI 601 Query: 212 F---------EFDH-------------KVIVEQGIK--------GR----------EIEC 231 F + ++E I+ G E+ Sbjct: 602 QNNVSLIPKGSFSQQKDVIEMPSSTCVEYLLEPYIETDRIILDQGELIHEIKEGWVELTV 661 Query: 232 AVLGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAA--IAPEINDKIRAIAVQ 288 VL ++ ++ + + + K+ G + P +A E +I+ + + Sbjct: 662 GVLEHNQIYRSLNPSITLAEGAVLSLEEKFQGGTGVNLTPPPEKILASEDVSQIKFLIEK 721 Query: 289 AYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKL--WQASGLGYTDLITR 345 L AR+D+F E ++V+ E NTLPG T +++ + + L L+ Sbjct: 722 TADALQIQNYARLDIFYHRETKKMVVIEANTLPGLTPSTVFYQQGLAEKKPLNPLSLLEI 781 Query: 346 LIELALE 352 +I LE Sbjct: 782 IISSKLE 788 >UniRef50_B0MM64 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM64_9FIRM Length = 354 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 180/350 (51%), Gaps = 6/350 (1%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K R+ ++FGG SA+H SL +A +++ ++ K + + +GI + G+W S + Sbjct: 1 MAKKRIAVLFGGASADHAASLHTAYSVLSSLPKE-IEPLAIGITRAGRWLFYPGSYENIK 59 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + S ++ I + + +D +FP++HG GEDG +QG+ Sbjct: 60 DGSWEQDSDCCSCV-ISPDMTNKGVIKIISDGESTIHRIDAVFPVLHGKYGEDGRVQGLC 118 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA--EVESKL 178 ++A LP +G+D A+A C D+ + +L D+ + + +TL R+ ++++ A ++ KL Sbjct: 119 KLAGLPVIGNDFAAAALCNDRRIMDLVLSDSNIKVIENVTLHRSEMNDMTAAIKKITGKL 178 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-ND 237 P++ P + +SVG + +E++ A+ +F +I E +KGRE+ CAVLG Sbjct: 179 SFPIYTAPTSCSTSVGACRAENEKELEEAIKASFSHHPYIIAESAVKGRELTCAVLGAKH 238 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + + GE+V T D ++YI +++ VPA + +KI+ A AY L C Sbjct: 239 HDERVAIGELVRTDDSIDKLSEYI-ASTSELKVPAKLDGLTQNKIKQTARAAYDALSCKC 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 ARVD+ L + EV + + +PG S++ +L S Y +++ LI Sbjct: 298 FARVDMVLDNDGEVYVRRVRGIPGLDRQSIFTRLVTESTYSYEEMLRMLI 347 >UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriaceae RepID=D1AUY0_STRM9 Length = 299 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 159/351 (45%), Gaps = 54/351 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+G+++GG S E EVS+ + K I+ +DKS+++VV + I K Sbjct: 1 MRIGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISK------------------ 42 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + +D + +HG GE G +Q +L A Sbjct: 43 ------------------------KEDIFKVVDLNLDFAYIALHGEFGESGDVQAILETA 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + + GS +L+SA CMDKD+TK L +++G+ I + + + LG + Sbjct: 79 GIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKGEN----IKFSDLNLGEKII 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD-HKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP GSS+GV T++E+ ++ F+ ++V++E+ G EI ++ + Sbjct: 135 LKPNRGGSSIGVYFATNDEELEYGLNEIFKLGENEVLIEEMKSGIEISVPIIA---GKVF 191 Query: 243 TCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I F+ Y +KY + + V + ++I ++AY + C G AR+ Sbjct: 192 PTLLIEPLKDTFFDYTSKYENGGAKEYV--YFFEESLQNEINDFTIKAYNAVKCKGFARI 249 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 D L +N+ E+NTLPG T S+ PK G Y++ + LI+ +++ Sbjct: 250 DYILV-DNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSETLDLLIKESIK 299 >UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma centrale str. Israel RepID=D1ASV0_ANACI Length = 336 Score = 266 bits (681), Expect = 8e-70, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 153/350 (43%), Gaps = 54/350 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L + ++ GG S E EVSL K I DA+ + ++ ++++ + + Sbjct: 13 LSIAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAP------- 65 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 D+++ +HG GEDG G+L + Sbjct: 66 ------------------------------------DLVYNALHGGQGEDGCASGLLDIL 89 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 L + S V AS+ MDK +TK +L+ G++ F LT+ + + P Sbjct: 90 GLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEE-----VLSAKEVMPYPFV 144 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GS++GV + S +Y A + +++VE+ I G+E+ AV +A Sbjct: 145 IKPICGGSTIGVHAIFSRSEYLDLSVHADALEGRMLVEEYIPGQEVHTAVF---LGRAIG 201 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 E + Y YD KY+ E + V PA ++ ++ AV+ YQ LGC ++RVD Sbjct: 202 TMEFLFEGRVYGYDAKYV-EGLCRHVFPANLSDDVYSLTMEWAVKLYQCLGCRTVSRVDF 260 Query: 304 FLTPENEVV-INEINTLPGFTNISMYPKL-WQASGLGYTDLITRLIELAL 351 N+ + + EINT PG T S P++ W GL + ++ +++ AL Sbjct: 261 RYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIVKDAL 310 >UniRef50_A9KRE2 D-alanine--D-alanine ligase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRE2_CLOPH Length = 347 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 138/335 (41%), Gaps = 19/335 (5%) Query: 32 DKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALR-PSATSLAQVPGKHEHQLIDA 90 + + + +GI + + D L +A + D Sbjct: 12 EADPYSKLRVGITYNLKKGIRTEVIDAEAEYDSIDTVLAIKNALECDNCHIELMEADTDL 71 Query: 91 QNGQPLPTVDVIFPIVHG--TLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 VD++F I G G + + +L + N+PF GSD +DK + KR+L Sbjct: 72 PKRLKETPVDIVFNIAEGLKGRGREAEVPAVLNMFNIPFTGSDETTLCLALDKALCKRVL 131 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS---KVTSEEQYA 205 + + T+ + + + P VKP +GSS G+S T++E+ Sbjct: 132 STYRIRTPKYRVFTKDDN------RLNTNFSFPCIVKPNAEGSSKGISDICIATNKEELK 185 Query: 206 IAV-DLAFEFDHKVIVEQGIKGREIECAVLGNDN-PQASTCGEIVL----TSDFYAYDTK 259 V D + ++VE+ I GRE VLGN + + EI+ + Y+++ K Sbjct: 186 TLVTDNIKAYGQDMLVEEYIDGREFTVGVLGNGDDVHVFSPMEIIYLKKNKFNIYSFNVK 245 Query: 260 YIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 + + P+ + P+I +++ +A + ++ L C +R+D L E + EIN L Sbjct: 246 QDYKKLIRYECPSKLDPDIEEEMVFMAKKIFKVLSCHDFSRIDFRLNSEGKPYFIEINPL 305 Query: 320 PGFTN-ISMYPKLWQASGLGYTDLITRLIELALER 353 PG S +P L + G+ Y L+ ++ AL R Sbjct: 306 PGLAPGYSDFPMLAEFCGMDYVTLVRSILRNALHR 340 >UniRef50_Q8RDQ4 D-alanine--D-alanine ligase n=10 Tax=Fusobacterium RepID=DDL_FUSNN Length = 287 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 151/350 (43%), Gaps = 64/350 (18%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +R+ + GG S+E E+SL+S + +++++ K +D + +D+ Sbjct: 1 MRIAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDE------------------ 42 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + D+ + ++HG GE+G +Q +L + Sbjct: 43 ------------------------RNQVSAFVDNDYDLAYLVLHGGNGENGKIQAVLDIL 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + GS VLASA MDKD TK++ + G+ VE P+ Sbjct: 79 GKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKSY------------RPVEEIERFPVI 126 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP ++GSS G+ ++E+ AV K I+E I G E+ VL N +A Sbjct: 127 IKPVDEGSSKGLFLCNNKEEAEEAVKKLA----KPIIEDYIIGEELTVGVL---NGEALG 179 Query: 244 CGEIVLTSDF-YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 +I+ +D Y YD+KY + G+ PA I + + IA + + G G++R D Sbjct: 180 VLKIIPQADVLYDYDSKY-AKGGSVHEFPAKIENKSYKEAMKIAEKIHSEFGMKGISRSD 238 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L E E+ E+N+ PG T S+ P L G + D++ +E LE Sbjct: 239 FIL-SEGELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVETFLE 287 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.162 0.479 Lambda K H 0.267 0.0498 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,545,036,114 Number of Sequences: 3077464 Number of extensions: 125992596 Number of successful extensions: 334044 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2158 Number of HSP's successfully gapped in prelim test: 2986 Number of HSP's that attempted gapping in prelim test: 319876 Number of HSP's gapped (non-prelim): 6553 length of query: 364 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 234 effective length of database: 640,326,036 effective search space: 149836292424 effective search space used: 149836292424 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 94 (40.5 bits)