Phyre 2 Results for Q47688

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | Q47688
Date | Thu Jan 5 12:37:02 GMT 2012
Unique Job ID | 977151d8ec013e8f

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3du6A_
Top template information
PDB header:transferase Chain: A: PDB Molecule:telomerase reverse transcriptase; PDBTitle: structure of the catalytic subunit of telomerase, tert
Confidence and coverage
Confidence: | 99.9% | Coverage: | 61%
230 residues ( 61% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | Q | R | K | L | A | T | W | A | A | T | D | P | S | L | R | I | Q | R | L | L | R | L | I | T | Q | P | E | W | L | A | E | A | A | R | I | T | L | S | S | K | G | A | H | T | P | G | V | D | G | V | N | K | T | M | L | Q | A | R | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | V | E | L | Q | I | L | R | D | E | L | L | S | G | H | Y | Q | P | L | P | A | R | R | V | Y | I | P | K | S | N | G | K | L | R | P | L | G | I | P | A | L | R | D | R | I | V | Q | R | A | M | L | M | A | M | E | P | I | W | E | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | D | F | H | T | L | S | Y | G | F | R | P | E | R | S | V | H | H | A | I | R | T | V | K | L | Q | L | T | D | C | G | E | T | R | G | R | W | V | I | E | G | D | L | S | S | Y | F | D | T | V | H | H | R | L | L | M | K | A | V | R | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | R | I | S | D | A | R | F | M | T | L | L | W | K | T | I | K | A | G | H | I | D | V | G | L | F | R | A | A | S | E | G | V | P | Q | G | G | V | I | S | P | L | L | S | N | I | M | L | N | E | F | D | Q | Y | L | H | E | R | Y | L | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | G | K | A | R | K | D | R | W | Y | W | N | N | S | I | Q | R | G | R | S | T | A | V | R | E | N | W | Q | W | K | P | A | V | A | Y | C | R | Y | A | D | D | F | V | L | I | V | K | G | T | K | A | Q | V | E | A | I | R | E | E | C | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | G | V | L | E | G | S | L | K | L | R | L | N | M | D | K | T | K | I | P | H | V | N | D | G | F | I | F | L | G | H | R | L | I | R | K | R | S | R | Y | G | E | M | R | V | V | S | T | I | P | Q | E | K | A | R | N | F | A | A | S | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  | ? | ? | ? | ? |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | .
Sequence |  | T | A | L | L | W | K | V | R | I | S | G | E | I | L | L | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3du6A_ |

### PDB 3du6 chain A

Region: 53 - 333
Aligned: 230
Modelled: 243
Confidence: 99.9%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:telomerase reverse transcriptase;
PDBTitle: structure of the catalytic subunit of telomerase, tert

Phyre2
2 |
| c1rthA_ |

### PDB 1rth chain A

Region: 57 - 336
Aligned: 204
Modelled: 208
Confidence: 99.5%
Identity: 20%
PDB header:nucleotidyltransferase
Chain: A: PDB Molecule:hiv-1 reverse transcriptase;
PDBTitle: high resolution structures of hiv-1 rt from four rt-2 inhibitor complexes

Phyre2
3 |
| c1mu2A_ |

### PDB 1mu2 chain A

Region: 153 - 332
Aligned: 124
Modelled: 128
Confidence: 99.2%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:hiv-2 rt;
PDBTitle: crystal structure of hiv-2 reverse transcriptase

Phyre2
4 |
| c2opqA_ |

### PDB 2opq chain A

Region: 153 - 338
Aligned: 139
Modelled: 155
Confidence: 98.9%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:reverse transcriptase/ribonuclease h;
PDBTitle: crystal structure of l100i mutant hiv-1 reverse2 transcriptase in complex with gw420867x.

Phyre2
5 |
| d1xr7a_ |

### PDB 1xr7 chain A

Region: 91 - 350
Aligned: 222
Modelled: 235
Confidence: 98.7%
Identity: 16%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: RNA-dependent RNA-polymerase

Phyre2
6 |
| d2zd1b1 |

### PDB 2zd1 chain B domain 1

Region: 57 - 338
Aligned: 194
Modelled: 195
Confidence: 98.7%
Identity: 21%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: Reverse transcriptase

Phyre2
7 |
| d1u09a_ |

### PDB 1u09 chain A

Region: 91 - 336
Aligned: 209
Modelled: 221
Confidence: 98.7%
Identity: 16%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: RNA-dependent RNA-polymerase

Phyre2
8 |
| c3n6mA_ |

### PDB 3n6m chain A

Region: 91 - 350
Aligned: 221
Modelled: 235
Confidence: 98.7%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of ev71 rdrp in complex with gtp

Phyre2
9 |
| d1mu2a2 |

### PDB 1mu2 chain A domain 2

Region: 152 - 338
Aligned: 131
Modelled: 135
Confidence: 98.7%
Identity: 18%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: Reverse transcriptase

Phyre2
10 |
| d1xr6a_ |

### PDB 1xr6 chain A

Region: 91 - 350
Aligned: 222
Modelled: 235
Confidence: 98.6%
Identity: 15%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: RNA-dependent RNA-polymerase

Phyre2
11 |
| d1ra6a_ |

### PDB 1ra6 chain A

Region: 91 - 350
Aligned: 217
Modelled: 236
Confidence: 98.5%
Identity: 13%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: RNA-dependent RNA-polymerase

Phyre2
12 |
| d1ztwa1 |

### PDB 1ztw chain A domain 1

Region: 212 - 337
Aligned: 91
Modelled: 95
Confidence: 98.5%
Identity: 24%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: Reverse transcriptase

Phyre2
13 |
| d1khva_ |

### PDB 1khv chain A

Region: 30 - 336
Aligned: 276
Modelled: 288
Confidence: 98.5%
Identity: 16%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: RNA-dependent RNA-polymerase

Phyre2
14 |
| c2ijd1_ |

### PDB 2ijd chain 1

Region: 91 - 350
Aligned: 220
Modelled: 235
Confidence: 98.3%
Identity: 13%
PDB header:hydrolase, transferase
Chain: 1: PDB Molecule:picornain 3c, rna-directed rna polymerase;
PDBTitle: crystal structure of the poliovirus precursor protein 3cd

Phyre2
15 |
| c3kk1B_ |

### PDB 3kk1 chain B

Region: 57 - 329
Aligned: 194
Modelled: 201
Confidence: 98.3%
Identity: 18%
PDB header:transferase/dna
Chain: B: PDB Molecule:reverse transcriptase p51 subunit;
PDBTitle: hiv-1 reverse transcriptase-dna complex with nuceotide inhibitor gs-2 9148-diphosphate bound in nucleotide site

Phyre2
16 |
| d1xr5a_ |

### PDB 1xr5 chain A

Region: 91 - 350
Aligned: 219
Modelled: 235
Confidence: 98.3%
Identity: 15%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: RNA-dependent RNA-polymerase

Phyre2
17 |
| c2uutA_ |

### PDB 2uut chain A

Region: 91 - 336
Aligned: 209
Modelled: 228
Confidence: 98.1%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:rna-directed rna polymerase;
PDBTitle: the 2.4 angstrom resolution structure of the d346g mutant2 of the sapporo virus rdrp polymerase

Phyre2
18 |
| c3nahC_ |

### PDB 3nah chain C

Region: 91 - 336
Aligned: 211
Modelled: 224
Confidence: 98.1%
Identity: 16%
PDB header:transferase
Chain: C: PDB Molecule:rna dependent rna polymerase;
PDBTitle: crystal structures and functional analysis of murine norovirus rna-2 dependent rna polymerase

Phyre2
19 |
| d1sh0a_ |

### PDB 1sh0 chain A

Region: 60 - 336
Aligned: 242
Modelled: 255
Confidence: 97.9%
Identity: 17%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: RNA-dependent RNA-polymerase

Phyre2
20 |
| c2b43D_ |

### PDB 2b43 chain D

Region: 60 - 336
Aligned: 240
Modelled: 255
Confidence: 97.9%
Identity: 15%
PDB header:viral protein
Chain: D: PDB Molecule:non-structural polyprotein;
PDBTitle: crystal structure of the norwalk virus rna dependent rna polymerase2 from strain hu/nlv/dresden174/1997/ge

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3du6A_ |
|  | 99.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:telomerase reverse transcriptase; PDBTitle: structure of the catalytic subunit of telomerase, tert
2 | c1rthA_ |
|  | 99.5 | 20 | PDB header:nucleotidyltransferase Chain: A: PDB Molecule:hiv-1 reverse transcriptase; PDBTitle: high resolution structures of hiv-1 rt from four rt-2 inhibitor complexes
3 | c1mu2A_ |
|  | 99.2 | 19 | PDB header:transferase Chain: A: PDB Molecule:hiv-2 rt; PDBTitle: crystal structure of hiv-2 reverse transcriptase
4 | c2opqA_ |
|  | 98.9 | 20 | PDB header:transferase Chain: A: PDB Molecule:reverse transcriptase/ribonuclease h; PDBTitle: crystal structure of l100i mutant hiv-1 reverse2 transcriptase in complex with gw420867x.
5 | d1xr7a_ |
|  | 98.7 | 16 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
6 | d2zd1b1 |
|  | 98.7 | 21 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase
7 | d1u09a_ |
|  | 98.7 | 16 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
8 | c3n6mA_ |
|  | 98.7 | 15 | PDB header:transferase Chain: A: PDB Molecule:rna-dependent rna polymerase; PDBTitle: crystal structure of ev71 rdrp in complex with gtp
9 | d1mu2a2 |
|  | 98.7 | 18 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase
10 | d1xr6a_ |
|  | 98.6 | 15 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
11 | d1ra6a_ |
|  | 98.5 | 13 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
12 | d1ztwa1 |
|  | 98.5 | 24 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase
13 | d1khva_ |
|  | 98.5 | 16 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
14 | c2ijd1_ |
|  | 98.3 | 13 | PDB header:hydrolase, transferase Chain: 1: PDB Molecule:picornain 3c, rna-directed rna polymerase; PDBTitle: crystal structure of the poliovirus precursor protein 3cd
15 | c3kk1B_ |
|  | 98.3 | 18 | PDB header:transferase/dna Chain: B: PDB Molecule:reverse transcriptase p51 subunit; PDBTitle: hiv-1 reverse transcriptase-dna complex with nuceotide inhibitor gs-2 9148-diphosphate bound in nucleotide site
16 | d1xr5a_ |
|  | 98.3 | 15 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
17 | c2uutA_ |
|  | 98.1 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:rna-directed rna polymerase; PDBTitle: the 2.4 angstrom resolution structure of the d346g mutant2 of the sapporo virus rdrp polymerase
18 | c3nahC_ |
|  | 98.1 | 16 | PDB header:transferase Chain: C: PDB Molecule:rna dependent rna polymerase; PDBTitle: crystal structures and functional analysis of murine norovirus rna-2 dependent rna polymerase
19 | d1sh0a_ |
|  | 97.9 | 17 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
20 | c2b43D_ |
|  | 97.9 | 15 | PDB header:viral protein Chain: D: PDB Molecule:non-structural polyprotein; PDBTitle: crystal structure of the norwalk virus rna dependent rna polymerase2 from strain hu/nlv/dresden174/1997/ge
21 | d1rw3a_ |
| not modelled | 97.3 | 19 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase
22 | d1hara_ |
| not modelled | 96.5 | 23 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase
23 | d1raja_ |
| not modelled | 93.9 | 14 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
24 | c3mmpG_ |
| not modelled | 88.7 | 16 | PDB header:transferase Chain: G: PDB Molecule:rna-directed rna polymerase beta chain; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
25 | c3agqA_ |
| not modelled | 72.6 | 17 | PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii
26 | d1nb4a_ |
| not modelled | 71.3 | 15 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
27 | d1gx5a_ |
| not modelled | 41.9 | 17 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase
28 | c1nh2D_ |
| not modelled | 35.3 | 23 | PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia small chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex
29 | c1nvpD_ |
| not modelled | 33.2 | 19 | PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia gamma chain; PDBTitle: human tfiia/tbp/dna complex
30 | d1c0aa2 |
| not modelled | 15.8 | 19 | Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain
31 | d1l0wa2 |
| not modelled | 14.3 | 22 | Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain
32 | d1nh2d1 |
| not modelled | 11.2 | 26 | Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain
33 | d1nvpd1 |
| not modelled | 9.5 | 25 | Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain
34 | d1p9ya_ |
| not modelled | 7.3 | 14 | Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain
35 | d1w26a2 |
| not modelled | 6.3 | 21 | Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0