Phyre 2 alignment of P09373 with d1p9ka_

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Job Description | P09373
Confidence | 11.89% | Date | Thu Jan 5 11:02:15 GMT 2012
Rank | 68 | Aligned Residues | 29
% Identity | 14% | Template | d1p9ka_
SCOP info | Alpha-L RNA-binding motif | Alpha-L RNA-binding motif | YbcJ-like
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 279 | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . |  | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | T | S | T | F | L | D | V | Y | I | E | R | D | L | K | A | G | K | I | . | T | E | Q | E | A | Q | E | M | V | D | H | L | V | M | K | L | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | L | C | D | L | L | K | . | . | . | . | . | . | . | L | E | G | W | S | E | S | G | A | Q | A | K | I | A | I | A | E | G | Q | V | K | V | D
Template Known Secondary structure |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  | T | S |  | S | S | S | S | T | T | S |  |  |  |  |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 22 | . | . | . | . | . | . |  |  |  |  |  |  |  | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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