Phyre 2 alignment of P09373 with c2zcyM_

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Job Description | P09373
Confidence | 13.07% | Date | Thu Jan 5 11:02:15 GMT 2012
Rank | 52 | Aligned Residues | 40
% Identity | 28% | Template | c2zcyM_
PDB info | PDB header:hydrolase | Chain: M: PDB Molecule:proteasome component pre4; | PDBTitle: yeast 20s proteasome:syringolin a-complex
Resolution | 2.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 267 | . | . | 270 | . | . | . | . | . | . | . | . | . |  |  | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | V | K | S | Q | N | G | A | A | M | S | F | G | R | . | . | T | S | T | F | L | D | V | Y | I | E | R | D | L | K | A | G | K | I | T | E | Q | E | A | Q | E | M | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | Y | S | S | P | T | L | A | T | G | F | G | A | H | M | A | N | P | L | L | R | K | V | V | D | R | E | S | D | I | P | K | T | T | V | Q | V | A | E | E | A | I
Template Known Secondary structure |  |  |  |  |  | S |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  | S | G | G | G | T | T | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 119 | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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