Phyre 2 Results for P09373

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Email | l.a.kelley@imperial.ac.uk
Description | P09373
Date | Thu Jan 5 11:02:15 GMT 2012
Unique Job ID | 973cbb7f09cb6b84

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1h16a_
Top template information
Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 100%
759 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | E | L | N | E | K | L | A | T | A | W | E | G | F | T | K | G | D | W | Q | N | E | V | N | V | R | D | F | I | Q | K | N | Y | T | P | Y | E | G | D | E | S | F | L | A | G | A | T | E | A | T | T | T | L | W | D | K | V | M | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  | ? | ? |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | G | V | K | L | E | N | R | T | H | A | P | V | D | F | D | T | A | V | A | S | T | I | T | S | H | D | A | G | Y | I | N | K | Q | L | E | K | I | V | G | L | Q | T | E | A | P | L | K | R | A | L | I | P | F | G | G | I | K | M | I | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? | ? |  | ? | ? | ? |  | ? |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | G | S | C | K | A | Y | N | R | E | L | D | P | M | I | K | K | I | F | T | E | Y | R | K | T | H | N | Q | G | V | F | D | V | Y | T | P | D | I | L | R | C | R | K | S | G | V | L | T | G | L | P | D | A | Y | G | R | G | R | I | I | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | D | Y | R | R | V | A | L | Y | G | I | D | Y | L | M | K | D | K | L | A | Q | F | T | S | L | Q | A | D | L | E | N | G | V | N | L | E | Q | T | I | R | L | R | E | E | I | A | E | Q | H | R | A | L | G | Q | M | K | E | M | A | A | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | Y | G | Y | D | I | S | G | P | A | T | N | A | Q | E | A | I | Q | W | T | Y | F | G | Y | L | A | A | V | K | S | Q | N | G | A | A | M | S | F | G | R | T | S | T | F | L | D | V | Y | I | E | R | D | L | K | A | G | K | I | T | E | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | E | A | Q | E | M | V | D | H | L | V | M | K | L | R | M | V | R | F | L | R | T | P | E | Y | D | E | L | F | S | G | D | P | I | W | A | T | E | S | I | G | G | M | G | L | D | G | R | T | L | V | T | K | N | S | F | R | F | L | N | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | L | Y | T | M | G | P | S | P | E | P | N | M | T | I | L | W | S | E | K | L | P | L | N | F | K | K | F | A | A | K | V | S | I | D | T | S | S | L | Q | Y | E | N | D | D | L | M | R | P | D | F | N | N | D | D | Y | A | I | A | C | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | V | S | P | M | I | V | G | K | Q | M | Q | F | F | G | A | R | A | N | L | A | K | T | M | L | Y | A | I | N | G | G | V | D | E | K | L | K | M | Q | V | G | P | K | S | E | P | I | K | G | D | V | L | N | Y | D | E | V | M | E | R | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  | ? |  | ? |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | D | H | F | M | D | W | L | A | K | Q | Y | I | T | A | L | N | I | I | H | Y | M | H | D | K | Y | S | Y | E | A | S | L | M | A | L | H | D | R | D | V | I | R | T | M | A | C | G | I | A | G | L | S | V | A | A | D | S | L | S | A | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600
Sequence |  | K | Y | A | K | V | K | P | I | R | D | E | D | G | L | A | I | D | F | E | I | E | G | E | Y | P | Q | F | G | N | N | D | P | R | V | D | D | L | A | V | D | L | V | E | R | F | M | K | K | I | Q | K | L | H | T | Y | R | D | A | I | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660
Sequence |  | T | Q | S | V | L | T | I | T | S | N | V | V | Y | G | K | K | T | G | N | T | P | D | G | R | R | A | G | A | P | F | G | P | G | A | N | P | M | H | G | R | D | Q | K | G | A | V | A | S | L | T | S | V | A | K | L | P | F | A | Y | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720
Sequence |  | K | D | G | I | S | Y | T | F | S | I | V | P | N | A | L | G | K | D | D | E | V | R | K | T | N | L | A | G | L | M | D | G | Y | F | H | H | E | A | S | I | E | G | G | Q | H | L | N | V | N | V | M | N | R | E | M | L | L | D | A | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760
Sequence |  | E | N | P | E | K | Y | P | Q | L | T | I | R | V | S | G | Y | A | V | R | F | N | S | L | T | K | E | Q | Q | Q | D | V | I | T | R | T | F | T | Q | S | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1h16a_ |

### PDB 1h16 chain A

Region: 2 - 760
Aligned: 759
Modelled: 759
Confidence: 100.0%
Identity: 100%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: PFL-like

Phyre2
2 |
| d1qhma_ |

### PDB 1qhm chain A

Region: 5 - 615
Aligned: 611
Modelled: 611
Confidence: 100.0%
Identity: 100%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: PFL-like

Phyre2
3 |
| d1r9da_ |

### PDB 1r9d chain A

Region: 47 - 758
Aligned: 697
Modelled: 710
Confidence: 100.0%
Identity: 28%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: PFL-like

Phyre2
4 |
| c2y8nC_ |

### PDB 2y8n chain C

Region: 82 - 758
Aligned: 664
Modelled: 677
Confidence: 100.0%
Identity: 21%
PDB header:lyase
Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit;
PDBTitle: crystal structure of glycyl radical enzyme

Phyre2
5 |
| c2f3oB_ |

### PDB 2f3o chain B

Region: 82 - 758
Aligned: 661
Modelled: 677
Confidence: 100.0%
Identity: 21%
PDB header:unknown function
Chain: B: PDB Molecule:pyruvate formate-lyase 2;
PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus

Phyre2
6 |
| d1hk8a_ |

### PDB 1hk8 chain A

Region: 152 - 709
Aligned: 412
Modelled: 442
Confidence: 99.5%
Identity: 16%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: Class III anaerobic ribonucleotide reductase NRDD subunit

Phyre2
7 |
| c1hk8A_ |

### PDB 1hk8 chain A

Region: 152 - 709
Aligned: 412
Modelled: 454
Confidence: 99.5%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp

Phyre2
8 |
| c2cvuA_ |

### PDB 2cvu chain A

Region: 381 - 610
Aligned: 173
Modelled: 173
Confidence: 90.9%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain
PDBTitle: structures of yeast ribonucleotide reductase i

Phyre2
9 |
| c2wghA_ |

### PDB 2wgh chain A

Region: 382 - 607
Aligned: 164
Modelled: 164
Confidence: 89.1%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large
PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg.

Phyre2
10 |
| c3hnfA_ |

### PDB 3hnf chain A

Region: 382 - 607
Aligned: 164
Modelled: 176
Confidence: 88.4%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit;
PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp

Phyre2
11 |
| c1xjeA_ |

### PDB 1xje chain A

Region: 382 - 588
Aligned: 143
Modelled: 156
Confidence: 87.0%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent;
PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex

Phyre2
12 |
| c3r1rB_ |

### PDB 3r1r chain B

Region: 382 - 621
Aligned: 172
Modelled: 172
Confidence: 84.4%
Identity: 17%
PDB header:complex (oxidoreductase/peptide)
Chain: B: PDB Molecule:ribonucleotide reductase r1 protein;
PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli

Phyre2
13 |
| c3gr1A_ |

### PDB 3gr1 chain A

Region: 661 - 710
Aligned: 40
Modelled: 50
Confidence: 71.8%
Identity: 23%
PDB header:membrane protein
Chain: A: PDB Molecule:protein prgh;
PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392)

Phyre2
14 |
| c1pemA_ |

### PDB 1pem chain A

Region: 382 - 588
Aligned: 140
Modelled: 151
Confidence: 69.8%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha
PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium

Phyre2
15 |
| d1rlra2 |

### PDB 1rlr chain A domain 2

Region: 382 - 621
Aligned: 182
Modelled: 182
Confidence: 66.9%
Identity: 18%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: R1 subunit of ribonucleotide reductase, C-terminal domain

Phyre2
16 |
| d2bgxa1 |

### PDB 2bgx chain A domain 1

Region: 116 - 160
Aligned: 45
Modelled: 45
Confidence: 56.3%
Identity: 20%
Fold: PGBD-like
Superfamily: PGBD-like
Family: Peptidoglycan binding domain, PGBD

Phyre2
17 |
| d1u5tb1 |

### PDB 1u5t chain B domain 1

Region: 566 - 602
Aligned: 37
Modelled: 37
Confidence: 50.3%
Identity: 16%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Vacuolar sorting protein domain

Phyre2
18 |
| c3gr0D_ |

### PDB 3gr0 chain D

Region: 661 - 710
Aligned: 40
Modelled: 50
Confidence: 48.9%
Identity: 23%
PDB header:membrane protein
Chain: D: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362)

Phyre2
19 |
| d1dq3a4 |

### PDB 1dq3 chain A domain 4

Region: 670 - 721
Aligned: 48
Modelled: 52
Confidence: 46.9%
Identity: 19%
Fold: Homing endonuclease-like
Superfamily: Homing endonucleases
Family: Intein endonuclease

Phyre2
20 |
| c2jobA_ |

### PDB 2job chain A

Region: 287 - 307
Aligned: 21
Modelled: 21
Confidence: 40.5%
Identity: 24%
PDB header:lipid binding protein
Chain: A: PDB Molecule:antilipopolysaccharide factor;
PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
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46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
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71 |
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73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1h16a_ |
|  | 100.0 | 100 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
2 | d1qhma_ |
|  | 100.0 | 100 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
3 | d1r9da_ |
|  | 100.0 | 28 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
4 | c2y8nC_ |
|  | 100.0 | 21 | PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme
5 | c2f3oB_ |
|  | 100.0 | 21 | PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus
6 | d1hk8a_ |
|  | 99.5 | 16 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit
7 | c1hk8A_ |
|  | 99.5 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp
8 | c2cvuA_ |
|  | 90.9 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i
9 | c2wghA_ |
|  | 89.1 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg.
10 | c3hnfA_ |
|  | 88.4 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp
11 | c1xjeA_ |
|  | 87.0 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent; PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex
12 | c3r1rB_ |
|  | 84.4 | 17 | PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli
13 | c3gr1A_ |
|  | 71.8 | 23 | PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392)
14 | c1pemA_ |
|  | 69.8 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium
15 | d1rlra2 |
|  | 66.9 | 18 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain
16 | d2bgxa1 |
|  | 56.3 | 20 | Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD
17 | d1u5tb1 |
|  | 50.3 | 16 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain
18 | c3gr0D_ |
|  | 48.9 | 23 | PDB header:membrane protein Chain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362)
19 | d1dq3a4 |
|  | 46.9 | 19 | Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease
20 | c2jobA_ |
|  | 40.5 | 24 | PDB header:lipid binding protein Chain: A: PDB Molecule:antilipopolysaccharide factor; PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site
21 | d1jvaa3 |
| not modelled | 36.3 | 10 | Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease
22 | d2i15a1 |
| not modelled | 34.0 | 28 | Fold:MG296-like Superfamily:MG296-like Family:MG296-like
23 | c2vkjA_ |
| not modelled | 28.9 | 24 | PDB header:membrane protein Chain: A: PDB Molecule:tm1634; PDBTitle: structure of the soluble domain of the membrane protein2 tm1634 from thermotoga maritima
24 | d2di0a1 |
| not modelled | 24.5 | 22 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain
25 | c3gebC_ |
| not modelled | 23.3 | 24 | PDB header:hydrolase Chain: C: PDB Molecule:eyes absent homolog 2; PDBTitle: crystal structure of edeya2
26 | d1ztda1 |
| not modelled | 21.7 | 25 | Fold:RNase III domain-like Superfamily:RNase III domain-like Family:PF0609-like
27 | c3uo9B_ |
| not modelled | 21.4 | 20 | PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial; PDBTitle: crystal structure of human gac in complex with glutamate and bptes
28 | d1nh2a2 |
| not modelled | 20.3 | 36 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
29 | d1aisa1 |
| not modelled | 19.9 | 36 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
30 | d1nh2a1 |
| not modelled | 19.7 | 25 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
31 | c1r8jB_ |
| not modelled | 19.7 | 24 | PDB header:circadian clock protein Chain: B: PDB Molecule:kaia; PDBTitle: crystal structure of circadian clock protein kaia from2 synechococcus elongatus
32 | d1qnaa2 |
| not modelled | 19.1 | 36 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
33 | d1mp9a1 |
| not modelled | 19.0 | 29 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
34 | d1aisa2 |
| not modelled | 18.8 | 36 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
35 | c2khvA_ |
| not modelled | 18.3 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of protein nmul_a0922 from2 nitrosospira multiformis. northeast structural genomics3 consortium target nmr38b.
36 | d1v5ra1 |
| not modelled | 17.8 | 33 | Fold:N domain of copper amine oxidase-like Superfamily:GAS2 domain-like Family:GAS2 domain
37 | d1rpya_ |
| not modelled | 17.7 | 17 | Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain
38 | d1qnaa1 |
| not modelled | 17.6 | 25 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
39 | d1jwoa_ |
| not modelled | 17.4 | 39 | Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain
40 | d1mp9a2 |
| not modelled | 17.3 | 42 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
41 | d1w7pd1 |
| not modelled | 16.4 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain
42 | c2q01A_ |
| not modelled | 16.4 | 19 | PDB header:isomerase Chain: A: PDB Molecule:uronate isomerase; PDBTitle: crystal structure of glucuronate isomerase from caulobacter crescentus
43 | c2hjhB_ |
| not modelled | 16.1 | 44 | PDB header:hydrolase Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2; PDBTitle: crystal structure of the sir2 deacetylase
44 | d1uj8a1 |
| not modelled | 15.8 | 22 | Fold:Another 3-helical bundle Superfamily:IscX-like Family:IscX-like
45 | d1vioa2 |
| not modelled | 15.5 | 17 | Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain
46 | d1cdwa1 |
| not modelled | 15.5 | 25 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
47 | c3knyA_ |
| not modelled | 14.9 | 14 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein bt_3535; PDBTitle: crystal structure of a two domain protein with unknown function2 (bt_3535) from bacteroides thetaiotaomicron vpi-5482 at 2.60 a3 resolution
48 | d1k9aa2 |
| not modelled | 14.6 | 29 | Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain
49 | c2a7oA_ |
| not modelled | 14.2 | 29 | PDB header:transcription Chain: A: PDB Molecule:huntingtin interacting protein b; PDBTitle: solution structure of the hset2/hypb sri domain
50 | d1bf5a3 |
| not modelled | 13.9 | 12 | Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain
51 | c2k5eA_ |
| not modelled | 13.6 | 8 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195
52 | c2zcyM_ |
| not modelled | 13.1 | 28 | PDB header:hydrolase Chain: M: PDB Molecule:proteasome component pre4; PDBTitle: yeast 20s proteasome:syringolin a-complex
53 | d1i3za_ |
| not modelled | 13.0 | 25 | Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain
54 | c3vjjA_ |
| not modelled | 12.9 | 23 | PDB header:viral protein Chain: A: PDB Molecule:p9-1; PDBTitle: crystal structure analysis of the p9-1
55 | d1xlya_ |
| not modelled | 12.9 | 22 | Fold:RNA-binding protein She2p Superfamily:RNA-binding protein She2p Family:RNA-binding protein She2p
56 | d1fs7a_ |
| not modelled | 12.8 | 13 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
57 | c1fs9A_ |
| not modelled | 12.8 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex
58 | d2nlua1 |
| not modelled | 12.4 | 44 | Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:PWWP domain
59 | d1dwka2 |
| not modelled | 12.3 | 21 | Fold:Cyanase C-terminal domain Superfamily:Cyanase C-terminal domain Family:Cyanase C-terminal domain
60 | d1cdwa2 |
| not modelled | 12.3 | 25 | Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain
61 | c3pkiF_ |
| not modelled | 12.3 | 32 | PDB header:hydrolase Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: human sirt6 crystal structure in complex with adp ribose
62 | c3gd5D_ |
| not modelled | 12.2 | 19 | PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from gloeobacter2 violaceus
63 | c2ci8A_ |
| not modelled | 12.2 | 24 | PDB header:translation Chain: A: PDB Molecule:cytoplasmic protein nck1; PDBTitle: sh2 domain of human nck1 adaptor protein - uncomplexed
64 | c3k35D_ |
| not modelled | 12.1 | 32 | PDB header:hydrolase Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: crystal structure of human sirt6
65 | c2q82A_ |
| not modelled | 11.9 | 35 | PDB header:structural protein Chain: A: PDB Molecule:core protein p7; PDBTitle: crystal structure of core protein p7 from pseudomonas phage2 phi12. northeast structural genomics target oc1
66 | d1u8sa1 |
| not modelled | 11.9 | 13 | Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor
67 | c2hx6A_ |
| not modelled | 11.9 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb
68 | d1p9ka_ |
| not modelled | 11.9 | 14 | Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like
69 | c2ksgA_ |
| not modelled | 11.8 | 28 | PDB header:antibiotic Chain: A: PDB Molecule:dermcidin; PDBTitle: solution structure of dermcidin-1l, a human antibiotic2 peptide
70 | c3d36B_ |
| not modelled | 11.7 | 13 | PDB header:transferase/transferase inhibitor Chain: B: PDB Molecule:sporulation kinase b; PDBTitle: how to switch off a histidine kinase: crystal structure of2 geobacillus stearothermophilus kinb with the inhibitor sda
71 | c2pmzV_ |
| not modelled | 11.7 | 12 | PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
72 | c3df1R_ |
| not modelled | 11.6 | 19 | PDB header:ribosome Chain: R: PDB Molecule:30s ribosomal protein s18; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with hygromycin b. this file contains the3 30s subunit of the first 70s ribosome, with hygromycin b4 bound. the entire crystal structure contains two 70s5 ribosomes.
73 | c3d2rB_ |
| not modelled | 11.4 | 9 | PDB header:transferase Chain: B: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 4; PDBTitle: crystal structure of pyruvate dehydrogenase kinase isoform 4 in2 complex with adp
74 | c2vpmB_ |
| not modelled | 11.4 | 11 | PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase
75 | d1hmja_ |
| not modelled | 11.3 | 9 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
76 | c3pcsB_ |
| not modelled | 11.2 | 18 | PDB header:protein transport/transferase Chain: B: PDB Molecule:espg; PDBTitle: structure of espg-pak2 autoinhibitory ialpha3 helix complex
77 | d1yuaa2 |
| not modelled | 11.1 | 11 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment
78 | d1dzfa2 |
| not modelled | 11.0 | 14 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
79 | d1etea_ |
| not modelled | 10.9 | 10 | Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines
80 | d1qada_ |
| not modelled | 10.8 | 12 | Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain
81 | c2i6lB_ |
| not modelled | 10.8 | 14 | PDB header:transferase Chain: B: PDB Molecule:mitogen-activated protein kinase 6; PDBTitle: crystal structure of human mitogen activated protein kinase2 6 (mapk6)
82 | d1a81e1 |
| not modelled | 10.6 | 29 | Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain
83 | c3sohB_ |
| not modelled | 10.6 | 29 | PDB header:motor protein Chain: B: PDB Molecule:flagellar motor switch protein flig; PDBTitle: architecture of the flagellar rotor
84 | c2uvaI_ |
| not modelled | 10.6 | 12 | PDB header:transferase Chain: I: PDB Molecule:fatty acid synthase beta subunits; PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400
85 | c2kj8A_ |
| not modelled | 10.4 | 13 | PDB header:dna binding protein Chain: A: PDB Molecule:putative prophage cps-53 integrase; PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2
86 | d2uubr1 |
| not modelled | 10.4 | 26 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Ribosomal protein S18 Family:Ribosomal protein S18
87 | d1eika_ |
| not modelled | 10.3 | 16 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
88 | c3t4aG_ |
| not modelled | 10.1 | 33 | PDB header:immune system Chain: G: PDB Molecule:fibrinogen-binding protein; PDBTitle: structure of a truncated form of staphylococcal complement inhibitor b2 bound to human c3c at 3.4 angstrom resolution
89 | d2b4ya1 |
| not modelled | 10.1 | 22 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators
90 | d1jyra_ |
| not modelled | 10.1 | 38 | Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain
91 | c3ol0C_ |
| not modelled | 10.1 | 50 | PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly
92 | c3hp7A_ |
| not modelled | 10.0 | 24 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus.
93 | c1mqrA_ |
| not modelled | 10.0 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:alpha-d-glucuronidase; PDBTitle: the crystal structure of alpha-d-glucuronidase (e386q) from bacillus2 stearothermophilus t-6
94 | c3dxnA_ |
| not modelled | 9.9 | 19 | PDB header:transferase Chain: A: PDB Molecule:calmodulin-like domain protein kinase isoform 3; PDBTitle: crystal structure of the calcium-dependent kinase from toxoplasma2 gondii, 541.m00134, kinase domain.
95 | d1yc5a1 |
| not modelled | 9.8 | 32 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators
96 | c3cekA_ |
| not modelled | 9.7 | 10 | PDB header:transferase Chain: A: PDB Molecule:dual specificity protein kinase ttk; PDBTitle: crystal structure of human dual specificity protein kinase (ttk)
97 | c3nzqB_ |
| not modelled | 9.6 | 13 | PDB header:lyase Chain: B: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600
98 | c3gxxB_ |
| not modelled | 9.5 | 13 | PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b
99 | c2vkzH_ |
| not modelled | 9.4 | 13 | PDB header:transferase Chain: H: PDB Molecule:fatty acid synthase subunit beta; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0