213 d2hoxa1 Probab=99.86   E-value=6.6e-19  Score=132.91  Aligned_columns=282  Identities=14%

Q ss_pred             HHHHHHHHHHC--------CCCEEEEECCHHHHHHHHHHHCCCCCCCE--------EEECCCCCHHHHHHHHHCCCCEEE
Q ss_conf             99999999970--------89879998998999999999722797478--------998188734899999972993599
Q batch____        34 RRCQQWLEQRF--------GSAKVLLTPSCTASLEMAALLLDIQPGDE--------VIMPSYTFVSTANAFVLRGAKIVF   97 (376)
Q Consensus        34 ~~l~~~la~~~--------g~~~~i~~~sgt~al~~~l~~l~~~~Gd~--------Viv~~~~~~~~~~~~~~~g~~~~~   97 (376)
                      .+|++.++++.        ...++++++|++++++++++++ .+|||.        |++..+.|+.+...+...|...+.
T Consensus       103 ~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL-~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~  181 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISL-SPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV  181 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHH-SCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHH-CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCC
T ss_conf             89999999998850886788776999468899999999986-48886123567743573002377899999855997444


Q ss_pred             EECCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             51454311267788761036650110111358872679999987741036158851233575348852565411899964
Q batch____        98 VDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSF  177 (376)
Q Consensus        98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~  177 (376)
                      ++.|    ...+.......+....+.+++|++|.+.+       +.++++++|+|+++......   +.....+.++...
T Consensus       182 ~~~d----~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y~~~~~~---~~~~~~~~~i~~~  247 (425)
T d2hoxa1         182 WAGN----AANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYT---PIKYKADEDILLF  247 (425)
T ss_dssp             EEEE----GGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTS---CCCSCBCCSEEEE
T ss_pred             CCCC----HHHHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEECCCCCCCCC---CCCCCCCCEEEEE
T ss_conf             2479----88999724888579998178888560654-------23239689971432343323---3334568549998


Q ss_pred             CCCCCCC-CCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHH--------
Q ss_conf             7885666-7777179983898999877988725875543222210001222103336878899999873220--------
Q batch____       178 HETKNYT-AGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLE--------  248 (376)
Q Consensus       178 ~~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------  248 (376)
                      +++|.++ ++.+.|++++.++.+.+.+..++..                     ....++......+...++        
T Consensus       248 S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~---------------------~~~~~s~~~Q~aA~~~L~~~~~~~~~  306 (425)
T d2hoxa1         248 TMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK---------------------NTEGTPRETQLRSLKVLKEVVAMVKT  306 (425)
T ss_dssp             EHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHH---------------------HTSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHC---------------------CCCCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf             155101233231018996898999999986410---------------------57773689999999996020134565


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCC------CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf             -------0799999987889999999822657756414677------766666651267862885798999999998797
Q batch____       249 -------AADRINQQRLALWQNYYDALAPLAKAGRIELPSI------PDGCVQNAHMFYIKLRDIDDRSALINFLKEAEI  315 (376)
Q Consensus       249 -------~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI  315 (376)
                             ......+..+++.+.+.+.|...........+..      ......+....|+.++.. ..+.+.+.|.++||
T Consensus       307 ~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~-~~~~~~~lL~e~GI  385 (425)
T d2hoxa1         307 QKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE-EDKDCYQTFQNGRI  385 (425)
T ss_dssp             HTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG-GGCSHHHHHHHTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC-CHHHHHHHHHHCCE
T ss_conf             55548999999999999999999999863576300345655432210013778761699867898-08999999996694


Q ss_pred             EEEECCCCHHHCHHHHHHCCCCCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             788725201108213553025654421579838859995488799999999999998770
Q batch____       316 MAVFHYIPLHGCPAGEHFGEFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYF  375 (376)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irL~~~~~~t~edi~~~v~~l~~~f  375 (376)
                      .+++|                     ..-...++.|||++-.  ++|+++.++++|+++.
T Consensus       386 ~v~pG---------------------s~FG~~~~~vRiSl~~--~~e~ld~~l~rL~~~v  422 (425)
T d2hoxa1         386 NTQNG---------------------VGFEASSRYVRLSLIK--TQDDFDQLMYYLKDMV  422 (425)
T ss_dssp             ECEEG---------------------GGGTSCTTEEEEECSS--CHHHHHHHHHHHHHHH
T ss_pred             EEECC---------------------CCCCCCCCEEEEEECC--CHHHHHHHHHHHHHHH
T ss_conf             99717---------------------0238988659999139--9899999999999987


