Phyre 2 Results for P0ACG6

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Email | l.a.kelley@imperial.ac.uk
Description | P0ACG6
Date | Thu Jan 5 11:18:08 GMT 2012
Unique Job ID | 96191fd9454e4148

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c3arcl_
Top template information
PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
Confidence and coverage
Confidence: | 16.3% | Coverage: | 29%
15 residues ( 29% of your sequence) have been modelled with 16.3% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | .
Sequence |  | M | K | Q | Q | K | A | M | L | I | A | L | I | V | I | C | L | T | V | I | V | T | A | L | V | T | R | K | D | L | C | E | V | R | I | R | T | G | Q | T | E | V | A | V | F | T | A | Y | E | P | E | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3arcl_ |

### PDB 3arc chain L

Region: 7 - 21
Aligned: 15
Modelled: 15
Confidence: 16.3%
Identity: 13%
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution

Phyre2
2 |
| c2wj8N_ |

### PDB 2wj8 chain N

Region: 9 - 22
Aligned: 14
Modelled: 14
Confidence: 16.2%
Identity: 21%
PDB header:rna binding protein/rna
Chain: N: PDB Molecule:nucleoprotein;
PDBTitle: respiratory syncitial virus ribonucleoprotein

Phyre2
3 |
| c1zllE_ |

### PDB 1zll chain E

Region: 3 - 24
Aligned: 22
Modelled: 22
Confidence: 15.6%
Identity: 32%
PDB header:membrane protein/signaling protein
Chain: E: PDB Molecule:cardiac phospholamban;
PDBTitle: nmr structure of unphosphorylated human phospholamban2 pentamer

Phyre2
4 |
| d1xmec1 |

### PDB 1xme chain C domain 1

Region: 2 - 21
Aligned: 20
Modelled: 20
Confidence: 12.8%
Identity: 30%
Fold: Single transmembrane helix
Superfamily: Bacterial ba3 type cytochrome c oxidase subunit IIa
Family: Bacterial ba3 type cytochrome c oxidase subunit IIa

Phyre2
5 |
| d1prtc1 |

### PDB 1prt chain C domain 1

Region: 28 - 51
Aligned: 24
Modelled: 24
Confidence: 10.5%
Identity: 25%
Fold: OB-fold
Superfamily: Bacterial enterotoxins
Family: Bacterial AB5 toxins, B-subunits

Phyre2
6 |
| d1h9ma2 |

### PDB 1h9m chain A domain 2

Region: 25 - 48
Aligned: 24
Modelled: 24
Confidence: 9.9%
Identity: 25%
Fold: OB-fold
Superfamily: MOP-like
Family: BiMOP, duplicated molybdate-binding domain

Phyre2
7 |
| d1h9ra1 |

### PDB 1h9r chain A domain 1

Region: 25 - 46
Aligned: 22
Modelled: 22
Confidence: 9.0%
Identity: 14%
Fold: OB-fold
Superfamily: MOP-like
Family: BiMOP, duplicated molybdate-binding domain

Phyre2
8 |
| d1prtb1 |

### PDB 1prt chain B domain 1

Region: 28 - 51
Aligned: 24
Modelled: 24
Confidence: 8.9%
Identity: 29%
Fold: OB-fold
Superfamily: Bacterial enterotoxins
Family: Bacterial AB5 toxins, B-subunits

Phyre2
9 |
| d1y4oa1 |

### PDB 1y4o chain A domain 1

Region: 3 - 41
Aligned: 39
Modelled: 39
Confidence: 8.8%
Identity: 26%
Fold: Profilin-like
Superfamily: Roadblock/LC7 domain
Family: Roadblock/LC7 domain

Phyre2
10 |
| c2krxA_ |

### PDB 2krx chain A

Region: 26 - 37
Aligned: 12
Modelled: 12
Confidence: 8.1%
Identity: 25%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asl3597 protein;
PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244.

Phyre2
11 |
| d1h9ma1 |

### PDB 1h9m chain A domain 1

Region: 25 - 46
Aligned: 22
Modelled: 22
Confidence: 7.2%
Identity: 27%
Fold: OB-fold
Superfamily: MOP-like
Family: BiMOP, duplicated molybdate-binding domain

Phyre2
12 |
| d1fr3a_ |

### PDB 1fr3 chain A

Region: 25 - 46
Aligned: 22
Modelled: 22
Confidence: 6.9%
Identity: 18%
Fold: OB-fold
Superfamily: MOP-like
Family: Molybdate/tungstate binding protein MOP

Phyre2

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3arcl_ |
|  | 16.3 | 13 | PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
2 | c2wj8N_ |
|  | 16.2 | 21 | PDB header:rna binding protein/rna Chain: N: PDB Molecule:nucleoprotein; PDBTitle: respiratory syncitial virus ribonucleoprotein
3 | c1zllE_ |
|  | 15.6 | 32 | PDB header:membrane protein/signaling protein Chain: E: PDB Molecule:cardiac phospholamban; PDBTitle: nmr structure of unphosphorylated human phospholamban2 pentamer
4 | d1xmec1 |
|  | 12.8 | 30 | Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa
5 | d1prtc1 |
|  | 10.5 | 25 | Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits
6 | d1h9ma2 |
|  | 9.9 | 25 | Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain
7 | d1h9ra1 |
|  | 9.0 | 14 | Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain
8 | d1prtb1 |
|  | 8.9 | 29 | Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits
9 | d1y4oa1 |
|  | 8.8 | 26 | Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain
10 | c2krxA_ |
|  | 8.1 | 25 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asl3597 protein; PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244.
11 | d1h9ma1 |
|  | 7.2 | 27 | Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain
12 | d1fr3a_ |
|  | 6.9 | 18 | Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0