BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (51 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX              69   4e-11
UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root R...    65   1e-09
UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9...    63   2e-09
UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID...    63   3e-09
UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI        62   5e-09
UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero...    60   3e-08
UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax...    57   2e-07
UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOK...    56   5e-07
UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumo...    48   9e-05
UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronoba...    46   4e-04
UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp...    45   7e-04
UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammapr...    45   0.001
UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX           44   0.001
UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterob...    43   0.003
UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella ba...    41   0.012
UniRef50_Q1RBZ5 Putative uncharacterized protein hok n=1 Tax=Esc...    40   0.018
UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=...    40   0.018
UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio ...    39   0.063

>UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX
          Length = 52

 Score = 69.2 bits (168), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 33/48 (68%)

Query: 4  QKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          + +++  ++++CLT+++   +TRK LCE+R R G  EVA F AYE  +
Sbjct: 5  RSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK 52


>UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root RepID=C8TT42_ECO26
          Length = 70

 Score = 64.6 bits (156), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/51 (92%), Positives = 48/51 (94%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF  YE E+
Sbjct: 20 MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESEK 70


>UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX
          Length = 53

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 1  MKQQK-AMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEP 49
          MKQ K A+   L+++C T+++   +TR  LCEVR++ G  EV    AYE 
Sbjct: 1  MKQPKNALTWCLLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYES 50


>UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID=C9Y3Z0_CROTZ
          Length = 52

 Score = 63.0 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 4  QKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          +  +   +++IC+T+++   +TR  LCE+R++ GQ E A F AYE  +
Sbjct: 5  RSTLFWCVLMICITLLMFTFLTRHSLCELRLKDGQREFAAFLAYESGK 52


>UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI
          Length = 50

 Score = 62.3 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/50 (82%), Positives = 45/50 (90%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          MKQ KAM++ALIVIC+T +V ALVTRKDLCEV IRTGQTEVAVFTAYE E
Sbjct: 1  MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 50


>UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae
          RepID=D2TJU7_CITRO
          Length = 50

 Score = 59.6 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 4  QKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          QK +L +LIVICLT+++   + R  LCE+ IR G  E+A F A E ++
Sbjct: 3  QKCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACEVKQ 50


>UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001C3405D
          Length = 50

 Score = 56.9 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 4  QKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          ++A+L+ L +IC T+++   + R  LCE+  R  +TE+A   AYE + 
Sbjct: 3  KRALLLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAKR 50


>UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOKB_ECOLI
          Length = 49

 Score = 55.7 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          +   +++ L++IC+T++   L+TR+ L E+R R G  EVA   A    
Sbjct: 2  KHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALMACTSR 49


>UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumoniae 342
          RepID=B5RJZ0_KLEP3
          Length = 55

 Score = 48.0 bits (113), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 4  QKAMLIALIVICLTVIVTALVTRKDLCEVRI 34
             +L  ++++CLT++    +TRK LCE+R 
Sbjct: 5  PSNLLWCVLIVCLTLLAFTYLTRKSLCEIRY 35


>UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronobacter
          RepID=A7MPJ9_ENTS8
          Length = 56

 Score = 46.1 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          MK    +L  L ++C+T+++ AL+ +  LCE+ IR+G  EVA   A   +
Sbjct: 7  MKPLHYLLACLFMVCITILIFALMNQGTLCELTIRSGSQEVAAKLACTGK 56


>UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449
           RepID=A4SUJ6_AERS4
          Length = 120

 Score = 45.3 bits (106), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 29/47 (61%)

Query: 5   KAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
           K  +++L+++C+T +    + R  LCE+ +  G+TE+ +  AYE + 
Sbjct: 74  KTAVVSLLIVCITALGVISLVRDSLCELEVHQGETEIRLNLAYEAKR 120


>UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria
          RepID=A7MEL1_ENTS8
          Length = 52

 Score = 44.5 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          +    +  +I++C+TVI+   ++R+ LCE+R+R    E+    A +P E
Sbjct: 4  KDNTFIWCIIIVCVTVIMFTTLSRETLCELRLRGAGMEIVASLACKPRE 52


>UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX
          Length = 50

 Score = 44.2 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 4  QKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          Q+  L+ LIVIC+T++    + R  LC +R++ G T +    AYE + 
Sbjct: 3  QRTFLMMLIVICVTILCFVWMVRDSLCGLRLQQGNTVLVATLAYEVKR 50


>UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=C9Y1C5_CROTZ
          Length = 50

 Score = 42.6 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAY 47
          MK  K +    +V C+T+++ AL+    LCE+ I+ G  EVA   + 
Sbjct: 1  MKPLKYLFACFVVFCVTILIFALINHGTLCELTIKQGNKEVAARLSC 47


>UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella baltica OS223
          RepID=B8EG05_SHEB2
          Length = 68

 Score = 41.1 bits (95), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          M ++K   ++L ++C T++    + R DLC+V  R G   + V  AYE  
Sbjct: 18 MPKRKTTTLSLAIVCFTLLAALALIRDDLCKVEYRNGAMLLNVVLAYEVR 67


>UniRef50_Q1RBZ5 Putative uncharacterized protein hok n=1 Tax=Escherichia coli UTI89
           RepID=Q1RBZ5_ECOUT
          Length = 163

 Score = 40.3 bits (93), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 17  TVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
           T++    +TR+ L E+R R G  EVA   A    
Sbjct: 131 TILTFT-LTRQSLYELRFRDGDKEVAALMACTSR 163


>UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=HOKE_ECO57
          Length = 50

 Score = 40.3 bits (93), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 8  LIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          L+A+IV+CLTV+   L+    LCE  ++    E     AYEP++
Sbjct: 7  LVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK 50


>UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus
          RepID=Q8D675_VIBVU
          Length = 65

 Score = 38.8 bits (89), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 4  QKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          +K  L AL+V+C+T ++   +    LC++R +  Q ++++  AYE  
Sbjct: 19 KKTALAALVVVCITAVILTALYTGSLCDIRYKDQQNDLSIKLAYEVR 65


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX              61   1e-08
UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9...    58   1e-07
UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID...    56   2e-07
UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root R...    56   3e-07
UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero...    56   4e-07
UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI        54   1e-06
UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax...    54   1e-06
UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronoba...    54   2e-06
UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp...    53   3e-06
UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOK...    51   1e-05
UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammapr...    50   2e-05
UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX           50   2e-05
UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumo...    44   0.001

Sequences not found previously or not previously below threshold:

UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterob...    47   2e-04
UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=...    41   0.011
UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=S...    41   0.012
UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella ba...    41   0.013
UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24       40   0.018
UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio ...    40   0.029

>UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX
          Length = 52

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
           + +++  ++++CLT+++   +TRK LCE+R R G  EVA F AYE  +
Sbjct: 4  PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK 52


>UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX
          Length = 53

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 2  KQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEP 49
          + + A+   L+++C T+++   +TR  LCEVR++ G  EV    AYE 
Sbjct: 3  QPKNALTWCLLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYES 50


>UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID=C9Y3Z0_CROTZ
          Length = 52

 Score = 56.4 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 4  QKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          +  +   +++IC+T+++   +TR  LCE+R++ GQ E A F AYE  +
Sbjct: 5  RSTLFWCVLMICITLLMFTFLTRHSLCELRLKDGQREFAAFLAYESGK 52


>UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root RepID=C8TT42_ECO26
          Length = 70

 Score = 56.4 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/51 (92%), Positives = 48/51 (94%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF  YE E+
Sbjct: 20 MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESEK 70


>UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae
          RepID=D2TJU7_CITRO
          Length = 50

 Score = 55.7 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
           QK +L +LIVICLT+++   + R  LCE+ IR G  E+A F A E ++
Sbjct: 2  PQKCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACEVKQ 50


>UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI
          Length = 50

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/50 (82%), Positives = 45/50 (90%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          MKQ KAM++ALIVIC+T +V ALVTRKDLCEV IRTGQTEVAVFTAYE E
Sbjct: 1  MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 50


>UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001C3405D
          Length = 50

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
           ++A+L+ L +IC T+++   + R  LCE+  R  +TE+A   AYE + 
Sbjct: 2  PKRALLLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAKR 50


>UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronobacter
          RepID=A7MPJ9_ENTS8
          Length = 56

 Score = 53.7 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          MK    +L  L ++C+T+++ AL+ +  LCE+ IR+G  EVA   A   +
Sbjct: 7  MKPLHYLLACLFMVCITILIFALMNQGTLCELTIRSGSQEVAAKLACTGK 56


>UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449
           RepID=A4SUJ6_AERS4
          Length = 120

 Score = 53.4 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 29/47 (61%)

Query: 5   KAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
           K  +++L+++C+T +    + R  LCE+ +  G+TE+ +  AYE + 
Sbjct: 74  KTAVVSLLIVCITALGVISLVRDSLCELEVHQGETEIRLNLAYEAKR 120


>UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOKB_ECOLI
          Length = 49

 Score = 50.7 bits (120), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          +   +++ L++IC+T++   L+TR+ L E+R R G  EVA   A    
Sbjct: 2  KHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALMACTSR 49


>UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria
          RepID=A7MEL1_ENTS8
          Length = 52

 Score = 50.3 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          +    +  +I++C+TVI+   ++R+ LCE+R+R    E+    A +P E
Sbjct: 4  KDNTFIWCIIIVCVTVIMFTTLSRETLCELRLRGAGMEIVASLACKPRE 52


>UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX
          Length = 50

 Score = 49.9 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
           Q+  L+ LIVIC+T++    + R  LC +R++ G T +    AYE + 
Sbjct: 2  PQRTFLMMLIVICVTILCFVWMVRDSLCGLRLQQGNTVLVATLAYEVKR 50


>UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=C9Y1C5_CROTZ
          Length = 50

 Score = 46.8 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          MK  K +    +V C+T+++ AL+    LCE+ I+ G  EVA   +    
Sbjct: 1  MKPLKYLFACFVVFCVTILIFALINHGTLCELTIKQGNKEVAARLSCSDR 50


>UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumoniae 342
          RepID=B5RJZ0_KLEP3
          Length = 55

 Score = 44.5 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRI 34
              +L  ++++CLT++    +TRK LCE+R 
Sbjct: 4  PPSNLLWCVLIVCLTLLAFTYLTRKSLCEIRY 35


>UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=HOKE_ECO57
          Length = 50

 Score = 41.0 bits (95), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 5  KAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          K  L+A+IV+CLTV+   L+    LCE  ++    E     AYEP++
Sbjct: 4  KYALVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK 50


>UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=SRNB_ECOLI
          Length = 68

 Score = 41.0 bits (95), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 5  KAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          K  LI L+ +C TV+  +L+ R+ LCE+ I  G T V V  AYE  +
Sbjct: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68


>UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella baltica OS223
          RepID=B8EG05_SHEB2
          Length = 68

 Score = 40.6 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          M ++K   ++L ++C T++    + R DLC+V  R G   + V  AYE  
Sbjct: 18 MPKRKTTTLSLAIVCFTLLAALALIRDDLCKVEYRNGAMLLNVVLAYEVR 67


>UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24
          Length = 65

 Score = 40.3 bits (93), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 11 LIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          +  +C TV+  +L+ R+ LCE+ I  G T V V  AYE  +
Sbjct: 1  MFAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARQ 41


>UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus
          RepID=Q8D675_VIBVU
          Length = 65

 Score = 39.9 bits (92), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
           +K  L AL+V+C+T ++   +    LC++R +  Q ++++  AYE  
Sbjct: 18 PKKTALAALVVVCITAVILTALYTGSLCDIRYKDQQNDLSIKLAYEVR 65


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX              63   3e-09
UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9...    60   2e-08
UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero...    58   1e-07
UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID...    58   1e-07
UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronoba...    57   2e-07
UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterob...    57   2e-07
UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root R...    57   2e-07
UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax...    56   4e-07
UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI        55   9e-07
UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp...    54   2e-06
UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX           52   6e-06
UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOK...    52   6e-06
UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammapr...    51   1e-05
UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumo...    45   8e-04

Sequences not found previously or not previously below threshold:

UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=...    43   0.004
UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=S...    43   0.004
UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio ...    42   0.005
UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24       41   0.009
UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella ba...    40   0.018


CONVERGED!
>UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX
          Length = 52

 Score = 63.0 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
           + +++  ++++CLT+++   +TRK LCE+R R G  EVA F AYE  +
Sbjct: 4  PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK 52


>UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX
          Length = 53

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 2  KQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEP 49
          + + A+   L+++C T+++   +TR  LCEVR++ G  EV    AYE 
Sbjct: 3  QPKNALTWCLLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYES 50


>UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae
          RepID=D2TJU7_CITRO
          Length = 50

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
           QK +L +LIVICLT+++   + R  LCE+ IR G  E+A F A E ++
Sbjct: 2  PQKCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACEVKQ 50


>UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID=C9Y3Z0_CROTZ
          Length = 52

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 4  QKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          +  +   +++IC+T+++   +TR  LCE+R++ GQ E A F AYE  +
Sbjct: 5  RSTLFWCVLMICITLLMFTFLTRHSLCELRLKDGQREFAAFLAYESGK 52


>UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronobacter
          RepID=A7MPJ9_ENTS8
          Length = 56

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          MK    +L  L ++C+T+++ AL+ +  LCE+ IR+G  EVA   A   +
Sbjct: 7  MKPLHYLLACLFMVCITILIFALMNQGTLCELTIRSGSQEVAAKLACTGK 56


>UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=C9Y1C5_CROTZ
          Length = 50

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          MK  K +    +V C+T+++ AL+    LCE+ I+ G  EVA   +    
Sbjct: 1  MKPLKYLFACFVVFCVTILIFALINHGTLCELTIKQGNKEVAARLSCSDR 50


>UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root RepID=C8TT42_ECO26
          Length = 70

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/51 (92%), Positives = 48/51 (94%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF  YE E+
Sbjct: 20 MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESEK 70


>UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001C3405D
          Length = 50

 Score = 56.1 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
           ++A+L+ L +IC T+++   + R  LCE+  R  +TE+A   AYE + 
Sbjct: 2  PKRALLLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAKR 50


>UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI
          Length = 50

 Score = 54.9 bits (131), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/50 (82%), Positives = 45/50 (90%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          MKQ KAM++ALIVIC+T +V ALVTRKDLCEV IRTGQTEVAVFTAYE E
Sbjct: 1  MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 50


>UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449
           RepID=A4SUJ6_AERS4
          Length = 120

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 29/47 (61%)

Query: 5   KAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
           K  +++L+++C+T +    + R  LCE+ +  G+TE+ +  AYE + 
Sbjct: 74  KTAVVSLLIVCITALGVISLVRDSLCELEVHQGETEIRLNLAYEAKR 120


>UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX
          Length = 50

 Score = 52.2 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
           Q+  L+ LIVIC+T++    + R  LC +R++ G T +    AYE + 
Sbjct: 2  PQRTFLMMLIVICVTILCFVWMVRDSLCGLRLQQGNTVLVATLAYEVKR 50


>UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOKB_ECOLI
          Length = 49

 Score = 51.8 bits (123), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          +   +++ L++IC+T++   L+TR+ L E+R R G  EVA   A    
Sbjct: 2  KHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALMACTSR 49


>UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria
          RepID=A7MEL1_ENTS8
          Length = 52

 Score = 51.1 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          +    +  +I++C+TVI+   ++R+ LCE+R+R    E+    A +P E
Sbjct: 4  KDNTFIWCIIIVCVTVIMFTTLSRETLCELRLRGAGMEIVASLACKPRE 52


>UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumoniae 342
          RepID=B5RJZ0_KLEP3
          Length = 55

 Score = 44.9 bits (105), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRI 34
              +L  ++++CLT++    +TRK LCE+R 
Sbjct: 4  PPSNLLWCVLIVCLTLLAFTYLTRKSLCEIRY 35


>UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=HOKE_ECO57
          Length = 50

 Score = 42.6 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 5  KAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          K  L+A+IV+CLTV+   L+    LCE  ++    E     AYEP++
Sbjct: 4  KYALVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK 50


>UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=SRNB_ECOLI
          Length = 68

 Score = 42.6 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 5  KAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          K  LI L+ +C TV+  +L+ R+ LCE+ I  G T V V  AYE  +
Sbjct: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68


>UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus
          RepID=Q8D675_VIBVU
          Length = 65

 Score = 42.2 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 3  QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
           +K  L AL+V+C+T ++   +    LC++R +  Q ++++  AYE  
Sbjct: 18 PKKTALAALVVVCITAVILTALYTGSLCDIRYKDQQNDLSIKLAYEVR 65


>UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24
          Length = 65

 Score = 41.4 bits (96), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 11 LIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE 51
          +  +C TV+  +L+ R+ LCE+ I  G T V V  AYE  +
Sbjct: 1  MFAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARQ 41


>UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella baltica OS223
          RepID=B8EG05_SHEB2
          Length = 68

 Score = 40.3 bits (93), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 1  MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50
          M ++K   ++L ++C T++    + R DLC+V  R G   + V  AYE  
Sbjct: 18 MPKRKTTTLSLAIVCFTLLAALALIRDDLCKVEYRNGAMLLNVVLAYEVR 67


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.326    0.150    0.422 

Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,763,450
Number of Sequences: 3077464
Number of extensions: 8279848
Number of successful extensions: 41332
Number of sequences better than 1.0e-01: 23
Number of HSP's better than  0.1 without gapping: 65
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 41266
Number of HSP's gapped (non-prelim): 67
length of query: 51
length of database: 1,040,396,356
effective HSP length: 24
effective length of query: 27
effective length of database: 966,537,220
effective search space: 26096504940
effective search space used: 26096504940
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 87 (38.0 bits)
