HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/95e6609017803224/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/95e6609017803224/query.hhm DATE Sun Jan 15 07:09:52 2012 LENG 90 match states, 90 columns in multiple alignment FILT 104 out of 586 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.5 EVD 0.3727 -2.1943 SEQ >ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEEECCCEEECCCCCCEEEECCCCEEEECCCHHHHHHCC >ss_conf 998999999999719998999999999999999998539928965842588873077601268998789944754035325989997419 >Consensus MtkxelixxiaxxxxxsxxxvxxvixxlxxxixxxLxxgxxVxlxgfGxFxxxxxxxrxxxnpxtgexxxixxxxxvxFxpxkxlkxxiN >batch____ MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN >UniRef50_UPI0001B5322B(17-102:117) hypothetical protein PrD11_02876 n=1 Tax=Fusobacterium sp. D11 RepID=UPI0001B5322B E=0.0004 s/c=0.53 id=21% cov=86% -------------SNTSEKRARILIENFGEAIKETLLTEEIIRIKKFGSFLLTERKEWIGTLPGSGgkKRVKFSATKTLRFKFPRDVRKKL- >UniRef50_C0ESF2(6-92:118) Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ESF2_9FIRM E=0.0007 s/c=0.52 id=20% cov=96% --RQEFIDMVAAKSNnrYPKIDLYYIIRDAFWCLEDILRDGNRFEVKGILGIYPEYIEERQYNNFNKGKA-TVPPHYKPVIKPYSRLKRA-- >UniRef50_B7AMJ2(28-112:131) Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7AMJ2_9BACE E=1e-06 s/c=0.64 id=21% cov=84% -NTQDLGEAISRRCTVTPADVHAVIRSLPEVMSFFMENGNSVHLDGLGSFYYKLSCAGNGVD--TPEEVSREQVKAVR------------ >UniRef50_P75249(11-98:109) Uncharacterized protein MG353 homolog n=2 Tax=Mycoplasma RepID=Y529_MYCPN E=4e-06 s/c=0.60 id=17% cov=98% LSRSEINKIIAVATGVKEAKIKEIFKYLNTLLLNELVSRSVCILPeNLGKLRITIRNARIQKDMKTGEMKHIPPKPLVRYSPSKTIKE--- >UniRef50_Q2GIK3(13-102:106) Integration host factor, alpha subunit n=9 Tax=Anaplasmataceae RepID=Q2GIK3_ANAPZ E=5e-13 s/c=0.84 id=21% cov=101% LTKARIASMINREIGLSREDSLAIVGEILDEMSSSLVRCGSLKISSFGIFKVIRKKERVGRNPKTLEKFVVEEHNTVTFCPSVTVKRFIN >UniRef50_A6LAQ5(50-118:161) Putative uncharacterized protein n=4 Tax=Bacteroidales RepID=A6LAQ5_PARD8 E=0.0007 s/c=0.65 id=20% cov=78% -------------------EMEASLELLAKFVPQQLQQGHTVKIPGLGTFRLTFKSDGVEDINSFRANSMIKNVRIV-FTPSKELRESV- >UniRef50_Q6TFE9(33-121:183) Putative integration host factor alpha subunit n=1 Tax=Caedibacter taeniospiralis RepID=Q6TFE9_CAETA E=6e-09 s/c=0.69 id=19% cov=100% MSRNELIKHLSLKTKFSREDCNHFFYELMNLLREQLLNNRIILLEGLGRFETRVSFRKNAHNPRTMEKIKPREKRVVLFKFANEFKALI- >UniRef50_C9L0E1(36-118:205) Putative DNA-binding protein n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9L0E1_9BACE E=3e-08 s/c=0.72 id=21% cov=91% ----EFLDRVHKFTGISRSLLSGAMQSFQNELRDLLANGWNVELGDIGYFSVSLQGPPIMK----KEEVRAQSIklKNINFRPSAQFKKEV- >UniRef50_UPI0001BC5408(16-106:121) hypothetical protein FulcA4_07747 n=2 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC5408 E=0.0009 s/c=0.49 id=15% cov=101% MTEAEFLELYkKKRKLKNIKEAKEKLELFWEVIFAGIATERKVIVKDFGTFEAKKLKPRKIYDIHKNSLYMTKERTALKFRVKNGFMEIVN # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 5945 * 2017 441 * * * * * * * * * 1 0 * * * * * * 6835 0 0 N 2 * * 4331 * * * * 6204 3788 5899 * 1966 * * 4862 3478 1097 * * * 2 19 * 6264 * * * * 7249 0 0 K 3 6255 * * 4231 * * * 6623 950 * 4667 5294 * 5169 2406 6083 3596 * * 5216 3 35 6541 6232 0 * * 0 7347 1000 1000 S 4 3463 * 4479 3902 * 6191 5268 5147 2096 * * 4324 5069 3977 3557 2207 6307 5154 * 6599 4 42 6088 6178 1000 1000 1000 1000 7379 1000 1567 Q 5 6293 * 1882 1079 * 6424 * * 4499 * 5394 6208 * 3179 5068 6745 * * * * 5 15 6626 * 2000 415 0 * 7570 1000 1587 L 6 6312 * * * 2359 * * 2327 * 1150 3468 * * * * * * 4558 * 6665 6 0 * * * * * * 7582 0 0 I 7 2725 4145 * 6387 * 5644 * 1477 6535 2952 6342 6312 * * 6553 6578 6340 2606 * 4705 7 0 * * * * * * 7582 0 0 D 8 3798 * 2684 2734 6837 * 6424 6535 2042 * * 4228 * 6563 2523 3693 6180 6560 * 6852 8 0 * * * * * * 7582 0 0 K 9 3723 6881 5755 2551 6543 5666 5600 3717 5049 3143 4538 5000 * 3446 2571 5346 4247 6411 * 4928 9 30 5598 * 2322 322 * * 7582 1749 0 I 10 5693 * * * 6584 * * 1408 * 2170 5510 * * * * * 6387 1877 * 3941 10 26 5785 * 0 * * * 7582 1778 0 A 11 1130 6643 6651 6581 5171 5795 4545 * 4902 6424 5680 4666 * 4321 5025 2406 7103 5335 * 5748 11 17 6437 * 2322 322 * * 7582 1000 0 A 12 3014 * 3292 2245 * 5103 * * 2724 6418 * 4187 7217 3939 3084 3799 5458 4984 * * 12 18 6370 * 0 * * * 7582 1000 0 G 13 5327 5632 4942 3546 5916 5370 4566 4256 2362 5457 6794 3106 * 5873 2048 3974 6895 6880 * 5671 13 31 5578 * 0 * * * 7582 1633 0 A 14 4654 4071 * * 5886 5621 5977 5757 5709 3116 6320 4921 4954 4804 4217 2006 1976 6166 * 6597 14 28 5678 * 1155 860 * * 7593 1646 0 D 15 6890 6257 3994 3758 * 1524 6415 6423 4155 6475 * 2904 * 4347 6930 3321 3154 * * * 15 55 4732 * 607 1543 * * 7593 2626 0 I 16 6589 4997 * * 3416 * 6202 2676 4375 1698 3713 * * * * * 5204 2657 * 3715 16 46 5008 * 0 * * * 7601 2022 0 S 17 6797 * 5277 4947 * 5365 5028 * 3759 7073 * 3807 3280 6380 * 1449 2116 7771 6858 * 17 0 * * * * * * 7601 0 0 K 18 5697 * * 2704 6739 * 6808 4052 2154 5466 5639 6732 3686 3142 2955 3883 * 4226 6638 5597 18 12 6940 * 1000 1000 * * 7601 1000 0 A 19 2379 6797 5044 3364 * 3202 * 5297 2001 * 7771 4575 5511 5760 5623 3263 5199 4727 * 6498 19 17 6430 * 0 * * * 7601 1000 0 A 20 5029 * 1492 2443 * * * 5503 5174 4150 5448 5907 * 3506 4986 4702 5408 3449 * 6474 20 0 * * * * * * 7624 0 0 A 21 1979 4882 * * * 6874 * 2693 * 4398 6419 * * * * 4728 3371 1491 * * 21 0 * * * * * * 7624 0 0 G 22 4151 6845 3984 2572 5651 4874 6687 7186 1894 3863 6315 5782 * 6502 2928 4422 4680 6644 * 5246 22 0 * * * * * * 7643 0 0 R 23 2457 5777 6427 2522 * 3295 4476 5151 4360 4493 5788 3889 5630 3732 4326 5344 4270 5272 * 6309 23 12 6880 * 0 * * * 7643 1000 0 A 24 3489 6561 5059 * 3384 * 6401 2715 5051 3590 6502 6502 * 6497 * 5489 4049 1391 * * 24 0 * * * * * * 7643 0 0 L 25 5911 * * * 3451 * 6857 1879 * 1928 3921 * * * * * 5581 2156 * 4743 25 0 * * * * * * 7643 0 0 D 26 4333 6602 1898 2309 * 5904 * * 3170 * 5292 3754 * 3929 4297 5957 3616 6880 * 5655 26 0 * * * * * * 7643 0 0 A 27 2023 6315 3865 3147 * 4648 5660 5148 6388 3906 5070 4299 * 5363 5260 3098 3874 4153 * 5568 27 0 * * * * * * 7643 0 0 I 28 4100 * * * 2132 * * 2914 * 1445 4087 * * 6331 * * 6925 2997 * 6841 28 0 * * * * * * 7643 0 0 I 29 3865 * * 4639 2678 4133 * 3828 5874 2528 4555 4485 5293 3739 * 4274 5051 3240 5051 6404 29 0 * * * * * * 7643 0 0 A 30 4237 * 1705 2703 * 5470 6532 6388 2954 5483 * 4828 * 4217 4324 4807 3944 6386 5475 5972 30 0 * * * * * * 7643 0 0 S 31 3341 5578 6865 2531 4944 5639 7186 4691 5598 2723 4253 6871 * 6023 * 3947 3925 2380 * 5094 31 0 * * * * * * 7643 0 0 V 32 5373 6315 * * 5729 6470 * 1560 * 1828 3036 * * * 6261 5350 6793 2797 * * 32 0 * * * * * * 7643 0 0 T 33 3177 * 6663 4067 4946 3340 * 4350 3131 3810 5713 5571 5623 4309 4794 3328 3619 3256 * 5527 33 0 * * * * * * 7643 0 0 E 34 3743 * 2561 1894 6687 * 5820 7232 2924 5749 6401 3623 * 4368 4437 3591 5808 * * 6156 34 12 * 6871 * * * * 7643 0 0 S 35 2268 3773 * 2761 5669 4109 4038 6291 * 4232 6381 4313 * 3174 * 3519 4370 4876 * 5353 35 0 * * * * 0 * 7642 0 1000 L 36 6608 * * * 5050 * * 3551 * 440 4027 * * * * * * 3719 * * 36 33 5466 * 2795 224 * * 7643 1714 0 K 37 2741 6453 5796 3664 * 3972 6343 4103 2982 3476 5687 5537 * 4017 3743 2829 5263 4401 * * 37 12 6965 * 0 * * * 7643 1000 0 E 38 4017 * 2962 2374 * 6608 5359 * 3328 * 5394 2960 6839 4072 3352 3781 4051 * * 4995 38 0 * * * * * * 7643 0 0 G 39 5157 5584 3389 3712 * 936 6620 * 4997 * * 3546 * * 4642 4389 5519 6470 * 6831 39 13 6839 * 1000 1000 * * 7643 1000 0 D 40 * * 3654 2174 5051 2910 3986 * 4194 * * 3016 6358 4469 3564 4309 * 6404 5988 3746 40 41 5154 * 1403 686 * * 7643 2151 0 D 41 6587 5454 7145 2700 6502 6404 5412 3957 3240 6567 * 4256 4378 5667 2455 2597 3982 4630 * 7103 41 18 6331 * 1000 1000 * * 7643 1000 0 V 42 7067 6328 * * 3232 * * 2175 * 3310 * * * * * * * 859 * * 42 0 * * * * * * 7643 0 0 A 43 5687 7076 4935 2235 * * 3808 4200 2777 5564 * 4721 6506 4244 3301 3669 4050 3903 * 5257 43 27 5758 * 0 * * * 7624 1092 0 L 44 * 6137 * * 3157 * * 1908 * 966 * * * * * * * 3393 * * 44 12 6926 * 0 * * * 7624 1000 0 V 45 4083 * 3957 3710 5515 2958 4273 6506 3306 6899 6296 5950 2516 5634 2613 3821 * 5687 * * 45 36 5333 * 1029 971 * * 7624 1701 0 G 46 * 6612 3418 3072 * 1105 6433 * 3605 5761 * 3239 6110 * 5056 4764 * * * 6275 46 0 * * * * * * 7624 0 0 F 47 * * * * 1201 * * 3166 6448 1609 6332 6415 * * * * * 4247 4732 * 47 0 * * * * * * 7624 0 0 G 48 5134 6367 * * * 175 * 6220 6296 5330 * 6604 * * * * 6312 * * * 48 0 * * * * * * 7624 0 0 T 49 * * 5610 * 5111 5460 6783 3883 2815 4986 * 5028 * 5541 4097 2563 2070 3722 * 3579 49 0 * * * * * * 7624 0 0 F 50 * * * * 425 * * 4064 * 2949 4594 * * * * * * 6312 6387 * 50 56 5682 5752 2080 389 * * 7624 1751 0 A 51 4568 * 5894 2584 * 5632 5214 4142 2678 5806 7345 * * 4600 2956 2842 3559 6356 5559 4002 51 17 6395 * 2000 415 * 0 7607 1000 1613 V 52 4540 * * * 4911 5889 * 3679 4860 2456 4777 4982 2731 * 4883 5453 3808 1971 * 6632 52 0 * * * * * 0 7607 0 1613 K 53 4883 6395 7020 4049 * * 5504 3558 1843 6382 * 5188 * * 3345 3000 3094 3514 5609 6336 53 24 5934 * 570 1615 1143 870 7601 1671 1613 E 54 4501 * 4656 3225 3898 * 4075 4055 3497 2603 4665 5610 4806 4377 6706 4907 3721 4053 * 4420 54 34 * 5424 * * 0 * 7597 0 1000 R 55 * 6531 * 4441 6229 4376 * 6237 1993 5633 6628 5693 6649 4161 1721 5011 4014 3580 * 5512 55 15 6618 * 0 * 0 * 7592 1000 1656 A 56 3145 4487 5224 4388 6418 3353 6348 * 2060 5402 * 4393 2789 6937 * 2977 4780 5745 * * 56 50 6853 5283 1000 1000 * * 7612 1000 0 A 57 2257 * 5660 1987 6380 4492 * * 4872 5292 * 5047 2843 6983 4918 2772 4452 * * * 57 33 6439 6539 0 * 1502 628 7594 1000 2101 R 58 5101 6183 6722 5485 6293 3378 4619 6560 2416 5707 6616 * 4704 5292 1346 6553 4028 * 5714 * 58 46 6616 5568 0 * 585 1585 7596 1000 2091 T 59 5734 * 6531 3853 6437 5518 * 3868 2687 4023 4898 4563 3739 3972 3795 4831 3097 2795 * * 59 81 4952 5496 1621 567 * 0 7525 2225 2364 G 60 2637 6720 5534 4023 6582 1808 * 3727 6316 6545 4222 6600 6334 5402 5353 4735 4903 3216 * 4354 60 65 6782 4840 2000 415 307 2384 7496 1000 3178 R 61 5483 * 6372 4281 * 6723 4730 3255 3521 6318 5022 5518 * 5365 1640 4921 3476 3303 * 4624 61 75 5303 5285 1806 486 902 1105 7504 1639 2675 N 62 * * 3077 6703 * 6071 4882 6387 5553 4851 * 699 * 5465 6262 4303 4246 * * * 62 56 * 4703 * * 2142 371 7539 0 3038 P 63 5304 * 6654 4521 4091 * 6475 4211 4624 3815 4847 6349 919 6460 5463 5336 * 4680 * 6390 63 16 * 6475 * * 936 1067 7523 0 4099 Q 64 4724 * 4230 4737 4450 5748 4186 * 1723 4862 * 4369 6592 3425 2679 3816 6247 5469 * * 64 47 6222 5725 1000 1000 1365 709 7537 1000 3014 T 65 5710 * 4334 6727 6386 6328 * 6619 3323 6221 * 4226 5237 * 5056 5922 701 5550 * 6496 65 0 * * * * 289 2460 7537 0 3053 G 66 4266 6483 6661 5584 4530 1114 5076 5688 2435 5530 6402 4237 6686 5336 4441 * * * * * 66 13 6855 * 1000 1000 0 * 7609 1000 1000 K 67 4729 * * 887 * * * * 2304 6492 6382 4719 * 5105 4546 4941 4807 5805 * * 67 11 7009 * 0 * * * 7560 1000 0 E 68 4004 * 4790 3652 * 4927 6309 3962 3383 4308 4653 5539 2529 5212 4406 4132 3431 3374 * 6477 68 94 5761 4491 2039 402 * * 7560 1746 0 I 69 * 4427 6555 4236 4433 * 5608 2071 4513 3822 3542 5466 * 6636 6716 4209 4479 2411 6189 4579 69 0 * * * * 1606 574 7539 0 2379 T 70 5703 * 4496 4141 6398 * 5504 4020 2861 3848 4259 5682 6837 4286 3953 4257 2410 3348 * 4562 70 27 * 5771 * * * 0 7570 0 1823 I 71 4169 6287 * 6259 4209 * 6957 1619 4247 3517 6039 * 6358 * 4594 5184 4463 2056 * 6818 71 51 5276 6765 1585 585 2626 255 7554 1640 2811 A 72 4335 * 5595 2570 * 5586 6651 * 2953 6380 * 6564 1551 3837 3949 4820 5734 5418 6259 6361 72 95 6862 4179 1000 1000 283 2491 7567 1000 3073 A 73 1952 * 6412 2527 * 3482 * * * * 6045 6291 2045 4834 5316 3280 5384 6724 * * 73 67 4825 6617 808 1222 628 1502 7546 2130 3205 A 74 5846 6369 * * 5774 5130 2832 4932 1669 4976 * * 6360 6651 2066 6329 4844 3595 * 6247 74 132 4117 5062 1378 700 * 0 7531 3243 2189 K 75 6267 * 4374 * 6812 * 4639 6138 1709 4337 * 3120 6256 5843 2627 5463 3415 5186 * 3858 75 37 * 5322 * * 2501 280 7510 0 3172 V 76 3701 * 6282 6437 * 4654 * 3396 2477 5008 6833 4832 * * 3664 3450 2717 2583 * 5631 76 0 * * * * 0 * 7490 0 3377 P 77 6459 * * * 5516 * * 1929 * 3672 6260 * 2762 * * * 6429 1141 * * 77 28 7006 6414 1000 1000 * * 7555 1000 0 S 78 7016 6428 6375 * 5634 6819 4286 6100 1756 5418 * 3144 * * 2355 3616 4371 3613 * 4878 78 0 * * * * 0 * 7533 0 1000 F 79 5451 * * * 329 * * 4833 * 4661 * * * * * * 6179 4909 6564 4363 79 15 * 6633 * * * * 7549 0 0 R 80 6485 6689 * 6998 * * * * 1684 4232 * 6266 * 6443 1592 4714 2869 3977 * 6338 80 0 * * * * 0 * 7521 0 1000 A 81 2594 5150 * 7012 3659 * * 4411 * 6321 4574 * 978 6626 * 4626 5222 4941 * * 81 0 * * * * * * 7531 0 0 G 82 3195 6214 3818 4758 * 2203 * * 6321 4031 * * 6819 * 6093 1364 5920 5616 * 5073 82 0 * * * * * * 7497 0 0 K 83 3718 * 6906 4789 * 5597 * 6570 959 6282 6580 4211 4291 5678 4610 3486 5913 4675 * * 83 0 * * * * * * 7508 0 0 A 84 2906 6354 4651 2527 6350 4507 5765 5630 3079 4640 * 4950 5451 4634 3766 3460 3550 4940 * 6645 84 17 6417 * 2000 415 * * 7508 1000 0 L 85 5435 * * * 2635 * * 2950 * 1001 4176 * * * * * 6243 3594 6200 5512 85 16 6530 * 1585 585 * * 7508 1000 0 K 86 * * * 4349 6163 * 6124 4391 786 4614 6256 6416 * * 2518 5401 6455 5663 * * 86 15 * 6631 * * * * 7488 0 0 D 87 3945 * 2703 1848 * 6151 * * 2277 6403 * 4011 * 4491 3224 4847 6548 * * 6322 87 0 * * * * 0 * 7412 0 1000 A 88 2064 * * 2897 6414 5345 6120 4262 3146 3449 4195 * * 4231 2863 4313 * 5398 * * 88 0 * * * * * * 7379 0 0 V 89 6012 * * * 6165 * * 2389 * 1580 3186 * * * * * * 1577 * * 89 0 * * * * * * 7304 0 0 N 90 * * 3842 * * * * * * * * 104 * * * * * * * * 90 0 * * 0 * * * 6097 0 0 //