BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (90 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re...   129   3e-29
UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ...   127   9e-29
UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH   125   6e-28
UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi...   121   5e-27
UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ...   117   1e-25
UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D...   114   7e-25
UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D...   114   1e-24
UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID...   110   2e-23
UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID...   108   5e-23
UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ...   107   8e-23
UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep...   107   1e-22
UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH...   107   1e-22
UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A...   107   2e-22
UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter...   105   4e-22
UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ...   105   5e-22
UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T...   104   8e-22
UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T...   103   1e-21
UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa...   100   1e-20
UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID...   100   2e-20
UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha...   100   3e-20
UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ...    99   4e-20
UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0...    99   6e-20
UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=D...    98   8e-20
UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B...    97   1e-19
UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C...    97   1e-19
UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D...    96   2e-19
UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter...    96   3e-19
UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R...    96   3e-19
UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T...    96   4e-19
UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D...    96   4e-19
UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ...    94   1e-18
UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re...    94   1e-18
UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T...    94   1e-18
UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l...    92   5e-18
UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria Re...    91   1e-17
UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT        91   1e-17
UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a...    91   1e-17
UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R...    90   2e-17
UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ...    90   3e-17
UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil...    89   3e-17
UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso...    89   5e-17
UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI...    87   1e-16
UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia...    87   2e-16
UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri...    86   3e-16
UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ...    86   3e-16
UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria...    86   3e-16
UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T...    86   4e-16
UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact...    85   5e-16
UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ...    84   1e-15
UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ...    84   1e-15
UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein...    83   2e-15
UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p...    83   3e-15
UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S...    83   3e-15
UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri...    82   4e-15
UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin...    82   4e-15
UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace...    82   4e-15
UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga...    82   5e-15
UniRef50_B1ZRV0 Histone family protein DNA-binding protein n=2 T...    82   5e-15
UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet...    82   7e-15
UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc...    81   1e-14
UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=ro...    80   1e-14
UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T...    80   2e-14
UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ...    79   4e-14
UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T...    79   4e-14
UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr...    79   5e-14
UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta...    79   5e-14
UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand...    79   6e-14
UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D...    79   6e-14
UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par...    78   7e-14
UniRef50_Q2NQ11 DNA-binding protein n=2 Tax=Sodalis glossinidius...    78   8e-14
UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytop...    78   9e-14
UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteob...    78   1e-13
UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_...    78   1e-13
UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie...    78   1e-13
UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T...    77   1e-13
UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T...    77   2e-13
UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria Re...    77   2e-13
UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T...    77   2e-13
UniRef50_C4K5I4 DNA-binding protein HU-beta, NS1 (HU-1), plays a...    77   2e-13
UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH    76   3e-13
UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr...    76   3e-13
UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 ...    76   4e-13
UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr...    76   4e-13
UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba...    75   5e-13
UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale...    75   6e-13
UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteri...    75   9e-13
UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T...    74   1e-12
UniRef50_C3CT70 DNA-binding protein HU n=1 Tax=Bacillus thuringi...    74   1e-12
UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone...    74   1e-12
UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr...    74   1e-12
UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 T...    74   2e-12
UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 ...    74   2e-12
UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel...    74   2e-12
UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al...    73   2e-12
UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 ...    73   2e-12
UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=...    73   2e-12
UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 T...    73   3e-12
UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi...    73   3e-12
UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=...    73   4e-12
UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobact...    72   4e-12
UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr...    72   4e-12
UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae Re...    72   4e-12
UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 T...    72   4e-12
UniRef50_Q6ANC3 Related to integration host factor, alpha subuni...    72   5e-12
UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T...    72   5e-12
UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell...    72   6e-12
UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T...    72   7e-12
UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G...    72   8e-12
UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr...    71   8e-12
UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al...    71   1e-11
UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph...    71   1e-11
UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga...    71   1e-11
UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu...    71   1e-11
UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen...    70   2e-11
UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti...    70   2e-11
UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr...    70   2e-11
UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete...    70   2e-11
UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2...    70   2e-11
UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube...    70   3e-11
UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus...    70   3e-11
UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus...    70   3e-11
UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=...    69   3e-11
UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R...    69   3e-11
UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T...    69   3e-11
UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto...    69   4e-11
UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr...    69   4e-11
UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T...    69   4e-11
UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T...    69   5e-11
UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ...    69   6e-11
UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ...    69   7e-11
UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios...    69   7e-11
UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al...    68   8e-11
UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellul...    68   8e-11
UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=C...    68   1e-10
UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 ...    68   1e-10
UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bactero...    68   1e-10
UniRef50_C6JJT3 Predicted protein n=4 Tax=Fusobacterium RepID=C6...    68   1e-10
UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ...    67   1e-10
UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba...    67   1e-10
UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium Rep...    67   1e-10
UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaprote...    67   2e-10
UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T...    67   2e-10
UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr...    67   2e-10
UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 ...    67   2e-10
UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ...    67   2e-10
UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 T...    67   2e-10
UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr...    67   2e-10
UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce...    66   3e-10
UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G...    66   3e-10
UniRef50_Q3M1G4 Histone-like DNA-binding protein n=1 Tax=Anabaen...    66   3e-10
UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide...    66   3e-10
UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=...    66   3e-10
UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P...    66   3e-10
UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep...    66   4e-10
UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re...    66   4e-10
UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergen...    66   4e-10
UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G...    65   4e-10
UniRef50_C6HZV1 Putative integration host factor, alpha subunit ...    65   5e-10
UniRef50_B3DZP2 Bacterial nucleoid DNA-binding protein n=2 Tax=V...    65   5e-10
UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A...    65   6e-10
UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T...    65   6e-10
UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ...    65   7e-10
UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales Rep...    65   7e-10
UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=M...    65   8e-10
UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T...    65   8e-10
UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium Re...    65   9e-10
UniRef50_B5JL43 DNA-binding protein HU n=1 Tax=Verrucomicrobiae ...    65   9e-10
UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla...    64   1e-09
UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. S...    64   1e-09
UniRef50_A3VSB6 DNA-binding protein HU n=1 Tax=Parvularcula berm...    64   1e-09
UniRef50_A3RUQ6 DNA-binding protein HU n=4 Tax=Betaproteobacteri...    64   1e-09
UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 ...    64   1e-09
UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T...    64   1e-09
UniRef50_Q3EPN6 DNA-binding protein HU n=1 Tax=Bacillus thuringi...    64   1e-09
UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepI...    64   2e-09
UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T...    64   2e-09
UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B...    64   2e-09
UniRef50_C1EA69 Predicted protein n=2 Tax=Micromonas RepID=C1EA6...    64   2e-09
UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T...    64   2e-09
UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr...    64   2e-09
UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 T...    64   2e-09
UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T...    63   3e-09
UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 T...    63   3e-09
UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A...    63   4e-09
UniRef50_C1DT75 DNA-binding protein HU 1 (DNA-binding protein II...    62   4e-09
UniRef50_Q12P41 Histone-like DNA-binding protein n=9 Tax=Shewane...    62   4e-09
UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 T...    62   4e-09
UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr...    62   4e-09
UniRef50_C7LVH5 Histone family protein DNA-binding protein n=1 T...    62   4e-09
UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba...    62   4e-09
UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacterida...    62   5e-09
UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabac...    62   5e-09
UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P...    62   5e-09
UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr...    62   5e-09
UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus...    62   5e-09
UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi...    62   7e-09
UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T...    62   7e-09
UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D...    61   1e-08
UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Des...    61   1e-08
UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 T...    61   1e-08
UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bactero...    61   1e-08
UniRef50_A3EV93 Putative integration host factor, alpha subunit ...    61   1e-08
UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T...    61   1e-08
UniRef50_D0RNW1 Integration host factor subunit alpha (IHF-alpha...    60   2e-08
UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 T...    60   2e-08
UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Ta...    60   2e-08
UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th...    60   2e-08
UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidale...    60   2e-08
UniRef50_D0LVE2 Histone family protein DNA-binding protein n=1 T...    60   2e-08
UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T...    60   2e-08
UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=...    60   2e-08
UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1...    60   3e-08
UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 T...    60   3e-08
UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacte...    60   3e-08
UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax...    60   3e-08
UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID...    60   3e-08
UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R...    60   3e-08
UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding p...    59   3e-08
UniRef50_UPI0001BC8A49 single-stranded binding protein n=2 Tax=P...    59   3e-08
UniRef50_Q9ZL08 DNA-binding protein HU n=24 Tax=Epsilonproteobac...    59   4e-08
UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T...    59   4e-08
UniRef50_Q02AB3 Histone family protein DNA-binding protein n=3 T...    59   4e-08
UniRef50_B2UQF2 Histone family protein DNA-binding protein n=1 T...    59   4e-08
UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium...    59   4e-08
UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 T...    59   4e-08
UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A...    59   4e-08
UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo...    59   4e-08
UniRef50_Q2NJP6 DNA-binding protein HU n=12 Tax=Candidatus Phyto...    59   5e-08
UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 T...    59   5e-08
UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T...    59   6e-08
UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=...    58   7e-08
UniRef50_A0L712 Histone family protein DNA-binding protein n=5 T...    58   8e-08
UniRef50_B7J8S4 DNA-binding protein HU family protein n=1 Tax=Ac...    58   1e-07
UniRef50_UPI0000382BC5 COG0776: Bacterial nucleoid DNA-binding p...    58   1e-07
UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=A...    58   1e-07
UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=M...    57   1e-07
UniRef50_Q0BUC1 DNA-binding protein HU n=16 Tax=Acetobacteraceae...    57   1e-07
UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylo...    57   1e-07
UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria...    57   1e-07
UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabac...    57   1e-07
UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s...    57   1e-07
UniRef50_Q2SSG4 DNA-binding protein, HU n=1 Tax=Mycoplasma capri...    57   2e-07
UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=K...    57   2e-07
UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T...    57   2e-07
UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T...    57   2e-07
UniRef50_B1A4K2 Integration host factor subunit A-like protein n...    57   2e-07
UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 T...    57   2e-07
UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida...    57   3e-07
UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidu...    57   3e-07
UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 ...    56   3e-07

>UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5
          Length = 90

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/90 (73%), Positives = 75/90 (83%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID IAA AD+ KAAAGRALDA+I SVT +LK GD V LVGFGTF+V +R AR G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTGK + IAAAK P F+AGKALK+AVN
Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90


>UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms
          RepID=DBHA_AERHY
          Length = 90

 Score =  127 bits (320), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 72/89 (80%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+QL+D IAA AD+SKA A  AL+ II  +T+SLKEGD V LVGFGTF V  RA RTG
Sbjct: 1  MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTGKEI IAAA VPSF AGKALKDAV
Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAV 89


>UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH
          Length = 89

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 74/89 (83%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID IAA AD+ KAAAG+ALD +I ++TE+LK+GD V LVGFG+F V ERA R G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+EITI +AK P FR GKALKDA+
Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALKDAL 89


>UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms
          RepID=DBH_XYLFT
          Length = 94

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 73/89 (82%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LID +AA A++SK  AGRA+DA++  +TE+LKEGD V LVGFGTF V++RA R G
Sbjct: 1  MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ I IAA+  PSF+ GKALKDAV
Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAV 89


>UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria
          RepID=Q0AI99_NITEC
          Length = 90

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 71/90 (78%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI+ IA  ADI+KA AG ALD  ++++ ++L + D V LVGFGTF V ERAARTG
Sbjct: 1  MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG EI I AAKVP F AGKALKDAVN
Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90


>UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC
          Length = 90

 Score =  114 bits (286), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 70/89 (78%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ LI+ +A  AD++K  AG A+DA+  S+  SL +G+ V L+GFG F V+ERAAR G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTGKEI I A+KVP+F+AGKALKDAV
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAV 89


>UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN
          Length = 90

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 71/89 (79%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ LID IA  A+++K  A  AL+A + ++T SLKEG+ V L+GFGTF V ERAARTG
Sbjct: 1  MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG EI IAA+KVP+F +GKALKDA+
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAI 89


>UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD
          Length = 90

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ LI+ +A  A++SK  A +A+DA+  S+T +LKEG  V LVGFG+F V+ER+AR G
Sbjct: 1  MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+EI I A K P+F+ GK LKDAVN
Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAVN 90


>UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU
          Length = 92

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 71/89 (79%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+ +A  +++SK  A +A+D++  ++ ++LK GD + L+GFG F V+ER+AR G
Sbjct: 1  MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI I A+KVP+F+ GKALKDAV
Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAV 89


>UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA
          Length = 91

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI  IA  A++SK AA   ++A ++ VT+ LK+G+DV LVGFGTF   + A R G
Sbjct: 1  MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ +TIAA K P FR+GKALKDAVN
Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAVN 90


>UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH
          Length = 91

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 72/90 (80%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS L+  I+  ++++KA + RALDA+  ++T +L  GD+VA+ GFG+F V++RAARTG
Sbjct: 1  MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ I I A+KVP+F+AGK LK++VN
Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESVN 90


>UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD
          Length = 90

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 65/89 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI ++A    +SK  AG  ++ +   + ESL +GD V L+GFG F V+ERAAR G
Sbjct: 1  MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI IAA K P+F+AGK LKDAV
Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAV 89


>UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria
           RepID=Q2W5P8_MAGSA
          Length = 117

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           MNK  L++K+A  + +SKAAA   +DA  A++T +LK GDDV LVGFG+F+V +RAA+ G
Sbjct: 27  MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG  I IAA+K P F AGK LKDAVN
Sbjct: 87  RNPRTGATIKIAASKAPKFTAGKGLKDAVN 116


>UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria
          RepID=Q5ZUE2_LEGPH
          Length = 100

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 69/89 (77%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+L+D IA+G+ ++KA A R L+  +A+VT+ LK+GD V + GFG+F+   R+ARTG
Sbjct: 9  MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 68

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTGK I I A++V  F+AGK LK+AV
Sbjct: 69 RNPQTGKTIQIKASRVAKFKAGKNLKEAV 97


>UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria
          RepID=B1I182_DESAP
          Length = 91

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 67/89 (75%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI  +A   +++K  A +AL A++ S+ E+L  GD V LVGFGTF  +ERAAR G
Sbjct: 1  MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI IAA KVP F+AGK L+++V
Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89


>UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria
          RepID=A1AW42_RUTMC
          Length = 91

 Score =  104 bits (260), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 67/90 (74%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID IA  A++SK  A RAL+A   ++T ++   D V L GFG+F V+ RAARTG
Sbjct: 1  MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG  I I A+KV +F+AGKALK+AVN
Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAVN 90


>UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria
           RepID=B1Y0T8_LEPCP
          Length = 116

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 74/90 (82%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           +NKS+LI+ IA  ADISKAAA RAL+A+I  V  +LK+GD V+LVGFGTFAV +RAAR+G
Sbjct: 27  VNKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARSG 86

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG  I I ++KVP FR GKALKD++N
Sbjct: 87  RNPRTGAVIKIKSSKVPKFRPGKALKDSLN 116


>UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544
          RepID=C9KMW2_9FIRM
          Length = 91

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 68/90 (75%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+  +A  A ++K  A +A+ AI  S+ ++L EGD V ++GFGTF VKER+AR G
Sbjct: 1  MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T + I I A+K P+F+AGKALKDAVN
Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALKDAVN 90


>UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO
          Length = 91

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 65/88 (73%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NK  LI K+A   +++K  +  A+D + +S+   L +G+ V L+GFG F V+ERAAR GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NPQTG EI IAA+KVP+F+AGKALKDAV
Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAV 90


>UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1
          Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum) RepID=C4K6F1_HAMD5
          Length = 114

 Score = 99.8 bits (247), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+QLID+IA  A I+K  A   L+ I+  +TESLK+ + V LVGFGTF VK R AR  
Sbjct: 1  MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+ I + A  VPS    KALKDA+
Sbjct: 61 RNPQTGEPIELPACYVPSLNFAKALKDAL 89


>UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root
          RepID=DBH2_BACSU
          Length = 92

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 65/89 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI K+A    +SK     +++ +  +++E+LK G+ V++ GFGTF V+ERAAR G
Sbjct: 1  MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI I A K P+F+  KALKDAV
Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAV 89


>UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2
          Length = 96

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+L+  IA  +++SK  + RAL+A I +V E+L +G+ V LVGFGTF  +ER AR G
Sbjct: 1  MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60

Query: 61 RNPQTGKE-ITIAAAKVPSFRAGKALKDAVN 90
          RNP+  +E I I A+  P F+AGK+LK+AVN
Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAVN 91


>UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=DBH_STRGN
          Length = 91

 Score = 98.2 bits (243), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NK  LI K+AA  +++K  +  A+DA+ A+VTE L +G+ V L+GFG F V+ERAAR GR
Sbjct: 3  NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NPQTGKE  IAA+KVP+F+AGKALKDAV
Sbjct: 63 NPQTGKETKIAASKVPAFKAGKALKDAV 90


>UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria
           RepID=Q2W3I2_MAGSA
          Length = 136

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/89 (52%), Positives = 66/89 (74%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           +NK+ L+  +A  A +SKA A +A+D +  ++T +LK GD+V LVGFGTFAV  RAA  G
Sbjct: 47  VNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 106

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG++I+I A+K P F+AGK LKD +
Sbjct: 107 RNPRTGEKISIPASKQPKFKAGKGLKDGI 135


>UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6
          Length = 93

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 63/90 (70%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI  +A  + ++K  A  AL A I SV E+L+ G+ V LVGFGTF  +ERA R G
Sbjct: 1  MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T +EITI A+  P F+AGK LK+ VN
Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKVN 90


>UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA
          Length = 91

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 63/90 (70%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI  +A  + ++K  A  AL A+I SV E+L++G+ V LVGFGTF  +ERAAR G
Sbjct: 1  MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T + I I A  VP F+AGK  KD VN
Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKVN 90


>UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria
          RepID=Q121G1_POLSJ
          Length = 103

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 65/90 (72%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++LID IAA  D+SKAA GR L+ ++ ++ +++K+GD V LVGFGTF   +RAARTG
Sbjct: 1  MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +NP+TG+ + I A  VP F AG   K  V+
Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVVD 90


>UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS
          Length = 92

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 62/90 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LID +AA    SKA  G  LD ++  + +++ +GD V L+GFG+F   +RAARTG
Sbjct: 1  MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I I AAK   F AGKA KDAVN
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVN 90


>UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria
          RepID=A4JQB1_BURVG
          Length = 92

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LID +AAGA +SK+ A + + A++ ++T+++   + V L+GFG F+  +R+ARTG
Sbjct: 1  MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+EI IAAA    F AGKA KDAVN
Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAVN 90


>UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP
          Length = 92

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 61/89 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI+ I+  +++SK      L+  + ++ +SLK+G+ V LVGFGTF V  RAAR G
Sbjct: 1  MNKSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+ I I+A K P F +GK  K A+
Sbjct: 61 RNPQTGQTIHISATKTPVFISGKTFKTAI 89


>UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria
           RepID=B1XSK3_POLNS
          Length = 106

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 67/90 (74%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           +NK++LI  IA  A+ISKA A  AL++ I ++ +++ +GD V L+GFGTFA  +RAAR G
Sbjct: 13  LNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ + IAAAK   F AGKA KD+VN
Sbjct: 73  RNPKTGEPLKIAAAKTVKFSAGKAFKDSVN 102


>UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE
          Length = 92

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 60/90 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK + ++ +A   D+S+A A RAL  ++  + E +  G+ VA  GFG+F V ERA RTG
Sbjct: 1  MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG  I IAA++VP F AG  LK A+N
Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAIN 90


>UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter
          propionicus DSM 2379 RepID=A1AQ83_PELPD
          Length = 126

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 60/87 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+ KIA GA+++K  A + LD  IAS T +LK GD VA++GFG F+   R ARTG
Sbjct: 1  MNKTELVAKIAEGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKD 87
          RNPQTGK + IA      F  GKALKD
Sbjct: 61 RNPQTGKALQIAEKTNGKFTPGKALKD 87


>UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968
          RepID=D1RMX6_LEGLO
          Length = 92

 Score = 92.0 bits (227), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 63/90 (70%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  I+  + +SK  +  AL+A+I+ +TE L +GD + L GF + +VKE  ARTG
Sbjct: 1  MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+ I IAA+KV SF+ G  LK+A+N
Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAIN 90


>UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q2LW81_SYNAS
          Length = 91

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 62/92 (67%), Gaps = 7/92 (7%)

Query: 1  MNKSQLID---KIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAA 57
          MNK  L++   K+     +++   G  LD    ++TE+LK+G+ V L+GFGTF V +R+A
Sbjct: 1  MNKGDLVEAVTKVVGKKKLAQETVGCVLD----TMTEALKKGESVTLIGFGTFKVMKRSA 56

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RTGRNPQTGK I I A KVP F AGK LK+AV
Sbjct: 57 RTGRNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88


>UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT
          Length = 98

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 65/90 (72%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L++ ++  + +SK      LD  +A++ +SLK+G+ VALVGFGTF   ++ ARTG
Sbjct: 1  MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ + I A  VP F AGK+L++A++
Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAID 90


>UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation n=34 Tax=root
          RepID=B3R809_CUPTR
          Length = 92

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K++LID IAAG D ++KA A +AL+  ++++ +++ +GD ++L+GFGTF+  ER  R 
Sbjct: 1  MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+EI + AAK   F+AG+  KDAVN
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91


>UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE
          Length = 90

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 60/90 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +L   IA  AD++K  A R L+A++  +T +L   D V LVGFGTF  + R ARTG
Sbjct: 1  MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +NPQTG+ + I A+   +F+ GKAL+DAVN
Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAVN 90


>UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales
          RepID=A6TJN4_ALKMQ
          Length = 92

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ L+ K+A  ++++K  A  AL++ + SV E+L +GD V LVGFGTF V+ER  R G
Sbjct: 1  MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60

Query: 61 RNPQTGKE-ITIAAAKVPSFRAGKALKDAVN 90
          RNP+  ++ I I A+K P F+AGK LK+ +N
Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKIN 91


>UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae
           BRL-230010 RepID=UPI0001693F3B
          Length = 114

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 61/90 (67%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           MNK QL++ +A  +  SK  A +A+  ++ S+ E+LK+G +V LVGFG F V+ R AR G
Sbjct: 23  MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RN +TG+E+ + A KVP F AG  LK A+N
Sbjct: 83  RNRKTGEEVELPAGKVPVFTAGITLKKALN 112


>UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani
          RepID=Q3J6Y8_NITOC
          Length = 94

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 65/89 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L++ +   A++S+A A RA++A+  ++T  L E   V LVGFG+F+V++RAAR+G
Sbjct: 1  MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R+PQ+G+ I I A   P+F+  KALK+ V
Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKEIV 89


>UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM
          Length = 91

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 66/90 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN  +L   +A    +S+A AGRA+ A + +++ESL +   V+L+GFGTF+V ERAAR G
Sbjct: 1  MNLGELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG++I I+A++   F+AG++L++ VN
Sbjct: 61 RNPQTGEKINISASRTIRFKAGQSLREKVN 90


>UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia
          RepID=Q2J6X1_FRASC
          Length = 94

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 61/90 (67%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKSQL+D+IA   +  ++ A +A+DA+  ++ E++  G+ V + GFG F   ERAARTG
Sbjct: 1  MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+ + +AA+ VP FR G   K +V+
Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSVS 90


>UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria
          RepID=DBH5_RHILE
          Length = 91

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+  +A  A ++K+ A  A+DA+   V   LK   D+ L GFG+F V  RAA  G
Sbjct: 1  MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG E+ I A  VP F  GK LKDAVN
Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVN 90


>UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2
          Tax=Burkholderiaceae RepID=B2AK36_CUPTR
          Length = 92

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LID IAAG D ++KA A +AL+  ++++ +++  GD + LVGFG+F+  ER  R 
Sbjct: 1  MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG++IT+ AAK   FR G+  KDA N
Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDAAN 91


>UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria
          RepID=Q0AZ79_SYNWW
          Length = 110

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 61/85 (71%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+L+  +A  A+I++  A + LDA++ S+ ++L  GD V ++GFG+F V++R  R  
Sbjct: 1  MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           +P TGKEIT+ A KVP+F+ GK+L
Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85


>UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio
          vulgaris RepID=A1VFK7_DESVV
          Length = 91

 Score = 85.9 bits (211), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 62/91 (68%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADI-SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K++L++KI A A + +KA A  ALDA IA + +++  G+ V   GFG+F V +RAAR 
Sbjct: 1  MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+EI I A KV  F  GK LKDAV 
Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 91


>UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria
           RepID=Q7WX14_RALEH
          Length = 114

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1   MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
           M K++LI+ IAAG D ++KA A  AL+  + ++ +++ +GD ++LVGFGTF+  ERA R 
Sbjct: 22  MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81

Query: 60  GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
            RNP+TG+EI + AA+   F+AG+  ++AVN
Sbjct: 82  ARNPRTGEEIKVEAARTVKFKAGQRFREAVN 112


>UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14
          Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG
          Length = 101

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 61/90 (67%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +L   IA  AD++K  A + L+AI+ S+T +L + D V LVGFGTF  + R ARTG
Sbjct: 1  MRKPELAAVIAEKADLTKEKANQVLNAILDSITGAL-DKDTVTLVGFGTFEKRHRGARTG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +NPQTG+ + I A+   +F+ GK LKD+VN
Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLKDSVN 89


>UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms
          RepID=DBH_GUITH
          Length = 93

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKSQLI KIA     SK    + + +++  + +++  G+ V LVGFG+F  +ER AR G
Sbjct: 1  MNKSQLISKIAYYTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+++ + A+++P+F  G   ++ VN
Sbjct: 61 RNPRTGEKLFLPASRIPTFSVGNFFRNKVN 90


>UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp.
          D2 RepID=UPI0001BC7A84
          Length = 88

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 57/86 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI ++A    +S   AG ALD II ++TE++++G+++ LVGFG+F ++ER  R G
Sbjct: 1  MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALK 86
           NP TG  + I A +   FR G  ++
Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGSKMR 86


>UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA
          replication and in rpo translation n=3
          Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT
          Length = 89

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 58/89 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+QL+  +A  ++++K  A  AL ++   +T+SL EGD V + GFGTFA+    ARTG
Sbjct: 1  MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG  I I  A    F+A KALKD +
Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALKDVL 89


>UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S3Z3_OSTLU
          Length = 115

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 57/89 (64%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           +NK+ LID +A     +KA+ GR L+A + +++ +++ GD VAL  FGTFA K+R AR G
Sbjct: 23  LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP TG  + I AA  PSF A    KD V
Sbjct: 83  RNPLTGAALKIPAANYPSFSASSTFKDLV 111


>UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae
          RepID=C6X423_FLAB3
          Length = 96

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 62/90 (68%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGD-DVALVGFGTFAVKERAART 59
          MNKS+LID +A  A I+K AA  AL++ I++VT +L + D  V+LVGFGTF+V ERAAR 
Sbjct: 1  MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          G NP T K I IAA  V  F+AG  L  +V
Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSV 90


>UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis
          RepID=B2RHA9_PORG3
          Length = 88

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 58/86 (67%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+  I  +A  A+++KA A RA++A    VTE +  G+ +AL+GFGTF+V ERAAR G
Sbjct: 1  MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALK 86
           NP+T K I+I A KV  F+ G  L+
Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTLE 86


>UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae
          RepID=DBH_CAMJR
          Length = 98

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 59/89 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+  I  +A  A ++K  A  A DA+I+++T+ L +GD ++ +GFGTF+ +ERAAR  
Sbjct: 1  MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R P TGK I + A +V  F+ GK LK+AV
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89


>UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms
          RepID=DBH1_RHILE
          Length = 91

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+  +A  A ++KA A  A+DA+  +V   LK G D+ L GFG+F+V  R A  G
Sbjct: 1  MNKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG E+ I A  VP F AGK LKDAVN
Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90


>UniRef50_B1ZRV0 Histone family protein DNA-binding protein n=2
          Tax=Verrucomicrobia RepID=B1ZRV0_OPITP
          Length = 91

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 2/88 (2%)

Query: 1  MNKSQLIDKI--AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAAR 58
          MNK++L+D++    GA+ S AAA RA+DA++A+VT  L    +V LVGFG FAV  RAAR
Sbjct: 1  MNKAELVDEVRKLLGAETSTAAAERAVDAVLAAVTRGLHRDKEVQLVGFGAFAVATRAAR 60

Query: 59 TGRNPQTGKEITIAAAKVPSFRAGKALK 86
           G NP T + + I A K   F+AG+AL+
Sbjct: 61 RGFNPHTQQPMKIRAMKTIRFKAGQALR 88


>UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1
          RepID=Q0BW86_GRABC
          Length = 101

 Score = 81.6 bits (200), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 60/90 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN + LIDKIA   D +KA     + A I +++ +LK G++V + G G F V ERAAR G
Sbjct: 1  MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG  I IAA +   FRAGKALKDAVN
Sbjct: 61 RNPQTGATIEIAATRAARFRAGKALKDAVN 90


>UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC
          29149 RepID=A7AXT3_RUMGN
          Length = 92

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M +S LI  IA   D +++  A   +   + S+ ++L  GD V  VGFG+F V+ERA RT
Sbjct: 1  MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNPQ G EI I  +K   F+AGK LKD VN
Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKVN 91


>UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=root
          RepID=Q1V2L3_PELUB
          Length = 91

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 58/90 (64%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK QLI +++   ++SKA A R  D I  ++ ++LK  D V + GFGT+ V +R AR G
Sbjct: 1  MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG++I I A++   F   KALK+  N
Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKEIFN 90


>UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus
          Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE
          Length = 112

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 57/90 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ LI++++   ++++  +   ++AI  S+  SL+ GD + + GFG+F  ++R  R G
Sbjct: 1  MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG  + + A K+P F+  K LKD VN
Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELKDVVN 90


>UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN
          Length = 92

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 58/88 (65%)

Query: 3  KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
          K++L+  IA  A I+K  A  AL+A I +VT+SLK G DV LVGFGTF    RAA T RN
Sbjct: 4  KAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTARN 63

Query: 63 PQTGKEITIAAAKVPSFRAGKALKDAVN 90
          P+TG+ +   A+K   F+ G+ LK ++N
Sbjct: 64 PRTGETVNRPASKTARFQVGEGLKSSLN 91


>UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi
          (class) RepID=A9AXB4_HERA2
          Length = 95

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 54/86 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K + I ++A    ISK  A R +DA++  V+E L+ G+ V L GFGTF V+ER AR G
Sbjct: 1  MQKIEFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALK 86
           NP+T + +TI A K P F A  +LK
Sbjct: 61 VNPKTRERMTIEATKTPGFSASNSLK 86


>UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group
          RepID=DBH_RICCN
          Length = 99

 Score = 79.0 bits (193), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 9/99 (9%)

Query: 1  MNKSQLI---------DKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFA 51
          MNK++ I          K A+   ++KA A +AL+ ++ SV  ++K   ++ + GFG+F 
Sbjct: 1  MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60

Query: 52 VKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +  R AR GRNP+TG ++ I A   P+FRAG+ +K+A N
Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 99


>UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum
          sp. Group II RepID=A3EUM1_9BACT
          Length = 102

 Score = 79.0 bits (193), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          + KS+LID + A    ++K A    +D + +++T+ + +G  V +VGFG F   +RAART
Sbjct: 9  LTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAART 68

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GRNP TG  I IAA   P F AGKA KD+V
Sbjct: 69 GRNPATGAVIKIAATTTPRFAAGKAFKDSV 98


>UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)
          RepID=C4K4H0_HAMD5
          Length = 119

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 62/90 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+++   + ++KA +  A+ A+ +S+ E+L + + V ++ FGTF V+ R  R  
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG++I   A +V  F AGK+LKD+V+
Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSVH 90


>UniRef50_Q1D6D8 Integration host factor subunit alpha n=24
          Tax=Deltaproteobacteria RepID=IHFA_MYXXD
          Length = 129

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 57/90 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ +I+ +      SK  +   ++ +  ++ E+L+ GD + + GFG F V+++ AR G
Sbjct: 1  MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTGKEI I+A +V +FR  + LK A+N
Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSALN 90


>UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula
          bermudensis HTCC2503 RepID=A3VQA5_9PROT
          Length = 113

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ ++AA    +      + + AI   ++ +L++GD V L GFGTF+VK R ART
Sbjct: 1  MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+AGK +++ +N
Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERLN 91


>UniRef50_Q2NQ11 DNA-binding protein n=2 Tax=Sodalis glossinidius
          RepID=Q2NQ11_SODGM
          Length = 78

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 48/66 (72%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS LI+ +   +DI++  AG  + A +A++TE+L  G+ VAL GFG F VKERA R+G
Sbjct: 1  MNKSDLINAVIEKSDITQVKAGYVVSAFVAAITEALAAGESVALSGFGVFGVKERAERSG 60

Query: 61 RNPQTG 66
          RNPQTG
Sbjct: 61 RNPQTG 66


>UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytoplasma
          RepID=Q2NIZ7_AYWBP
          Length = 106

 Score = 77.8 bits (190), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDD---VALVGFGTFAVKERAA 57
          MNK + + K+A    I+K  A + L+  I  + ++ +E ++   V L GFGTF  K R A
Sbjct: 1  MNKLKFLRKLAEKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNA 60

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKALK 86
          R G+NP+TGK I I A KVP+F+  K LK
Sbjct: 61 REGKNPRTGKTIYIPAKKVPTFKFSKLLK 89


>UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteobacteria
          RepID=Q1GXQ0_METFK
          Length = 90

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS+L+  I   A+ S A     LDA+ + V E L  G +V L G G  +V ERAAR G
Sbjct: 1  MKKSELVALIKP-ANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARAG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I I A K P F A KALKDAVN
Sbjct: 60 RNPRTGEIIPIEAKKTPKFSAAKALKDAVN 89


>UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8
          Length = 96

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ L+D++A    + K      +DA++A V E+L  G  V L GFGTF V++R ARTG
Sbjct: 6  VTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKARTG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
            P T ++I I A + P+F+ GKALKD V 
Sbjct: 66 VKPGTKEKIKIPATQYPAFKPGKALKDKVK 95


>UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi
           RepID=A5CCR4_ORITB
          Length = 125

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1   MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
           +NK++ ++ I     +++KA   RAL+ I+  V ++++ G D+ +VGFG+F V+ RAAR 
Sbjct: 34  LNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAARD 93

Query: 60  GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           G NP+TG +I I  +    F+ GK LKDA N
Sbjct: 94  GHNPKTGAKIIIPESYQVVFKPGKTLKDACN 124


>UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular
          organisms RepID=B1Y4B9_LEPCP
          Length = 131

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 57/90 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+ +A    +SKA A R L  ++ +V  ++K+G  V L GFG+F    RAAR G
Sbjct: 1  MNKAELIEVLAKQHTLSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARNG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP TG +I IAA K+P F  G A K AV+
Sbjct: 61 VNPGTGDKIKIAAVKLPKFTPGTAFKAAVD 90


>UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1
          Tax=Thermomonospora curvata DSM 43183
          RepID=D1A9C1_THECD
          Length = 159

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 55/89 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++LI+ +AA A    A A R +DA+  ++ + +  G+ V + GFGTF    R ART 
Sbjct: 1  MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + +   + P FRAG+  KD V
Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRV 89


>UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria RepID=DBH_SYNY3
          Length = 100

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 1  MNKSQLID------KIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKE 54
          MNK +L+       K   G  I+K      + A I  + E + EG+ V LVGFG+F  +E
Sbjct: 1  MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60

Query: 55 RAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R  R GRNP+TG ++ I A KVP+F AGK  KD V
Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 95


>UniRef50_C8QX16 Histone family protein DNA-binding protein n=1
          Tax=Desulfurivibrio alkaliphilus AHT2
          RepID=C8QX16_9DELT
          Length = 95

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ LI ++    ++SK+ A   ++  ++   +SL+EG+D+ L GFG F+VK++ +R G
Sbjct: 3  LTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRRG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+E+ +A  +V +F+    L+  VN
Sbjct: 63 RNPQTGEELMLAPRRVITFKPSGLLRQRVN 92


>UniRef50_C4K5I4 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation n=1 Tax=Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)
          RepID=C4K5I4_HAMD5
          Length = 75

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 48/64 (75%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++LI K+A  A+ISKA A   ++++I SVTE LK G  VAL GFGTF VKERAARTG
Sbjct: 1  MKKNELITKVAVDAEISKAKAEAEVNSLINSVTEELKAGGAVALTGFGTFQVKERAARTG 60

Query: 61 RNPQ 64
          R P+
Sbjct: 61 RTPK 64


>UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH
          Length = 91

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  +   AD++K  A   ++    S+TE+L   + V + G  +F +KE  + TG
Sbjct: 1  MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG ++TI A K+P F+ GK LK+ V+
Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERVD 90


>UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria
          RepID=Q39VS3_GEOMG
          Length = 91

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ ++++I      SK  +   ++ +   + E+L+ G+ + + GFG F VKE+A R G
Sbjct: 1  MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG EI I+A ++ +F+  + LK ++N
Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSIN 90


>UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12
          Tax=Proteobacteria RepID=A1WDL1_ACISJ
          Length = 91

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+  LID IA   + SKAA  R LD++I  V   + +G  V L GFGTF     AARTG
Sbjct: 1  MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG  I I +   P F  G   KD V
Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLV 89


>UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium
          tumefaciens RepID=IHFB_AGRT9
          Length = 102

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+D +AA    + +  A  A+DA++  +T +L+ G+ V +  FGTF V+ R AR+
Sbjct: 1  MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP  G  + I    VP FRAGK ++D +N
Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLN 91


>UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria
          RepID=Q3A4K6_PELCD
          Length = 92

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 58/90 (64%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID +A    ++   A   ++ ++ +++++L EG  + + GFG+  VK+  A  G
Sbjct: 1  MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+EI +   K+P F+ GK L++ +N
Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERIN 90


>UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales
          RepID=A6LB49_PARD8
          Length = 94

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+ +A    + K  A + LDA I  VTE + E +++ LVGFGT   + +  R  
Sbjct: 1  MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG  + I A     F+ GK L +A+N
Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFLLEAMN 90


>UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteria
          RepID=Q3SRD9_NITWN
          Length = 99

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 54/80 (67%)

Query: 10 IAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEI 69
          +A   ++SK AA   L  ++  +T+ LK+GD + +VG G   V++RAAR GRNP TG+EI
Sbjct: 20 LAEDHELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARKGRNPATGEEI 79

Query: 70 TIAAAKVPSFRAGKALKDAV 89
           I A+K  +FRA K LK+A+
Sbjct: 80 QIKASKKVAFRAAKELKEAI 99


>UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum
          terrenum ATCC BAA-798 RepID=D1CFB6_THET1
          Length = 84

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 54/81 (66%)

Query: 3  KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
          K++LI+++A    ++K+   +  + +++ +  SL++G+DV + GFGTF V ER+ R GRN
Sbjct: 4  KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63

Query: 63 PQTGKEITIAAAKVPSFRAGK 83
          P+TG+EI I   K  +FR  K
Sbjct: 64 PRTGEEIEIPGGKRVTFRMSK 84


>UniRef50_C3CT70 DNA-binding protein HU n=1 Tax=Bacillus thuringiensis Bt407
          RepID=C3CT70_BACTU
          Length = 94

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 55/89 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L++K+     +SK+    A+D  I  + E+L+ G+ V+L GFG F  KER +R  
Sbjct: 1  MNKNELLEKMKERNRLSKSENQLAVDTFINIIYEALQNGEKVSLKGFGQFVTKERKSRNI 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R P + KE+ + A ++P+F  G+  K+ V
Sbjct: 61 RIPSSEKEVRVPAKEIPAFEPGEEFKNKV 89


>UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5
          Length = 113

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 60/90 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+++   + ++KA +  A+ A+ +S+ +SL + + V ++ F TF V  R+ R  
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          R+P+TG++I   A +VP F AGK LK +V+
Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLKASVH 90


>UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria
          RepID=IHFB_PSEPK
          Length = 100

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADI-SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI++I     + S      A+  ++  +++ L  GD + + GFG+F++  RA R 
Sbjct: 1  MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ +++    VP F+ GK L+D VN
Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVN 91


>UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1
          Tax=Methylobacterium nodulans ORS 2060
          RepID=B8IKW1_METNO
          Length = 90

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 50/90 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK  L+  IAA A +S+A   + L A     T+SLK GDDV L G G      + AR G
Sbjct: 1  MNKPDLLKAIAAKAGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+TG+ + I A  VP  RA   L DA+N
Sbjct: 61 HNPRTGQPLQIPARLVPKLRASTTLHDALN 90


>UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 Tax=cellular
           organisms RepID=B9LTH2_HALLT
          Length = 206

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 7/81 (8%)

Query: 16  ISKAAAGRALDAIIASVTESLKEGDDVAL-------VGFGTFAVKERAARTGRNPQTGKE 68
           +S+  A  AL+A I + T++LK+GD ++L        GFGTF++ +R+ARTGRNPQTGKE
Sbjct: 125 LSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNPQTGKE 184

Query: 69  ITIAAAKVPSFRAGKALKDAV 89
           I IAA  V  F+AG  L  AV
Sbjct: 185 IQIAAKNVVKFKAGAELSKAV 205



 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 50/65 (76%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+ +A+ + +SK+ A RALD    + T++L++GD   LVGFG+F++ +R+ARTG
Sbjct: 1  MNKAELIESMASESGLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSARTG 60

Query: 61 RNPQT 65
          RNP +
Sbjct: 61 RNPSS 65


>UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms
          RepID=IHFB_HALHL
          Length = 102

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+ IA+    ++      A+  ++  ++E+L  G  + + GFG+F++  R AR 
Sbjct: 1  MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + + A  VP F+ GK L++ VN
Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERVN 91


>UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria
          RepID=IHFB_OLICO
          Length = 106

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ +IA     + +      ++AI+  +  +L  GD V L GFG F+VK R AR 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+ GK +++ +N
Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLN 91


>UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 Tax=Bacteria
          RepID=A0LVA1_ACIC1
          Length = 163

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI  +AA     K  A  A++A+I ++T ++  G+ VA+ GFG F   ERAAR  
Sbjct: 1  MNKAELITAVAARIG-DKKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARMA 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+ + +    VP FRAG  LK  V+
Sbjct: 60 RNPATGERVRVKKTSVPKFRAGTRLKGVVS 89


>UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio
          magneticus RS-1 RepID=C4XHM4_DESMR
          Length = 92

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  +    ++    A   +++   S+ ++L  GD V + GFG+FAVKE    TG
Sbjct: 1  MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG ++ +   K+P F+ G+  K+ +N
Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKNYLN 90


>UniRef50_A5VG36 Histone family protein DNA-binding protein n=2
          Tax=Alphaproteobacteria RepID=A5VG36_SPHWW
          Length = 92

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN S L D +A     +KA A +A+D + A++ ++  +G++V+L GFG F VK+  AR G
Sbjct: 2  MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+ I IAA+K  SF   KA+KD +N
Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRLN 91


>UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii
          DSM 11347 RepID=B5YH73_THEYD
          Length = 92

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADI-SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI++++   DI +K      +D I   + E+L  G+ + + GF  F VK+R  R 
Sbjct: 1  MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG++I +   +  +F+  KALK+A+N
Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEALN 91


>UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR
          Length = 101

 Score = 72.8 bits (177), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 9/99 (9%)

Query: 1  MNKSQLI---------DKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFA 51
          MNK++ I          K       +KA A +AL+ ++ S+  + K    V + GFG+F 
Sbjct: 1  MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60

Query: 52 VKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          ++ R +R GRNP+TG ++TI A K P F+AG  LK+A N
Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACN 99


>UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobacteria
          RepID=A6Q378_NITSB
          Length = 91

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 56/89 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++ +  +A  A +SK    + +DA +  +T++LK GD+VA +GFGTF   +RAAR  
Sbjct: 1  MKKAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          + P T + + + A +V  F+ GK LK+AV
Sbjct: 61 KVPGTDRVVKVPATRVVKFKVGKKLKEAV 89


>UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria
          RepID=IHFB_PARL1
          Length = 110

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ ++A A   + +    R +  I   ++ +L  GD V L GFG F+VK R ART
Sbjct: 1  MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+ GK L++ +N
Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERLN 91


>UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae RepID=C9M6K0_9BACT
          Length = 131

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + K++L++ +   A + ++ A  A++A++A ++ +L +G  V LVGFGTF V++R+ARTG
Sbjct: 21  VTKTELVEFVRENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSARTG 80

Query: 61  RNPQ-TGKEITIAAAKVPSFRAGKALKDAVN 90
           RNPQ   K + I A KVP F+AGK L+ AV+
Sbjct: 81  RNPQDPTKTVHIPAKKVPVFKAGKLLRSAVD 111


>UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 Tax=Ralstonia
          pickettii 12D RepID=C6BPZ9_RALP1
          Length = 94

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+  L   IA  ++ S A   R LDA    VT+++  GD V ++GFGTF+   R AR G
Sbjct: 1  MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP TG+EI + A     F AG  L+ AVN
Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAVN 90


>UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2
           Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS
          Length = 103

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 55/90 (61%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + + ++ +++      S+      +D+ +  + ++L EG+ + LV FGTF V+++A RTG
Sbjct: 13  LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ ITI   +  SFR  K L++ VN
Sbjct: 73  RNPRTGEPITITKRQAVSFRPSKKLREQVN 102


>UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas
          auensis DSM 9187 RepID=C4LBB5_TOLAT
          Length = 91

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++LI+ +A   + +K  A  AL A+   +   L  G+ + + G GTF++  +AAR G
Sbjct: 1  MKKAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ + IAA K   F+A KAL DAVN
Sbjct: 61 RNPQTGETVEIAAKKTVKFKAAKALADAVN 90


>UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella
          RepID=A1S612_SHEAM
          Length = 91

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 53/89 (59%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ L   IA    +S+  A R L+ I+AS+ ++L+EG+ + L  FGTF ++    R  
Sbjct: 1  MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + +A    PSF+   ALK  +
Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLI 89


>UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus
          radiotolerans SRS30216 RepID=A6W7Q9_KINRD
          Length = 179

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++++D + A     K A   A++A++  +  ++ +GD VA+ GFGTF  + R ARTG
Sbjct: 1  MNKAEMVDALEARLGGRKQAVS-AVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ + I    VP FR G A K+ V+
Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVS 89


>UniRef50_Q12ND8 Integration host factor subunit beta n=185
          Tax=Gammaproteobacteria RepID=IHFB_SHEDO
          Length = 95

 Score = 71.6 bits (174), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+K+A   + +S      A+  ++  +  +L+ GD + + GFG+F++  RA RT
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALK---DAVN 90
          GRNP+TG  + +    VP F+ GK L+   DAVN
Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERVDAVN 94


>UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria
          RepID=IHFB_MANSM
          Length = 94

 Score = 71.2 bits (173), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+ +      IS  +   A+  I+  ++++L+ GD + + GFG+F++  R  R 
Sbjct: 1  MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG ++ + A  VP F+AGK L++ V+
Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERVD 91


>UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria
          RepID=IHFB_BRUMB
          Length = 94

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+  IA+    + +      + A+   +T +L EG+ V L GFG F+VK R AR+
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+ GK L+D +N
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLN 91


>UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3
          RepID=C8XUL7_9CAUD
          Length = 92

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++ +  IA+  +I+K  A + + + I  V  ++  G  V LVGFG F VK + AR G
Sbjct: 1  MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP  G+ I I A  V  F+ G+ LK+A N
Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLKNAAN 90


>UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria
          RepID=IHFB_AERS4
          Length = 94

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS LI+++AA    +       A+  I+  +  +L+ GD + + GFG+F++  RA R 
Sbjct: 1  MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG ++ +    VP F+ GK L++ VN
Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91


>UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901
          RepID=C5BJS4_TERTT
          Length = 93

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 54/87 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ L+ ++    ++++  A   ++AI+  VT +L  G+ V L G G+F+V+ R A TG
Sbjct: 1  MRKTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKD 87
           NPQTG+ + IAA     F+AGK L+D
Sbjct: 61 INPQTGEALRIAAKNQIFFKAGKRLRD 87


>UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3
          RepID=C2M9J7_9PORP
          Length = 90

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 53/85 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+  I  +A  A +++       +AI+ ++ E +K+G+ + LVGFG+F V +RAAR G
Sbjct: 1  MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           NP++GK I I A+K   F+   AL
Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85


>UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27
          RepID=C1A906_GEMAT
          Length = 110

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 6/92 (6%)

Query: 1  MNKSQLIDKIAA------GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKE 54
          M K+ L++ + A      G  ISK    R +DA + ++ E+L+E  ++ + GFGTF +++
Sbjct: 1  MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60

Query: 55 RAARTGRNPQTGKEITIAAAKVPSFRAGKALK 86
          R  R  RNP+TG  + ++A  VP F+  K L+
Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELR 92


>UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria
          RepID=IHFB_RHOCS
          Length = 93

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI ++A     + +    + +  I   +T++L  GD V L GFG F+VK+R AR 
Sbjct: 1  MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    +P F+ GK L++ +N
Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLN 91


>UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella
          bronchiseptica RepID=Q7WDC5_BORBR
          Length = 93

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 52/90 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K  LI  ++     S+      +D + ++++E L  G++  L G G F+  +RAARTG
Sbjct: 3  LTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAARTG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ + IAA+    F A K LKD VN
Sbjct: 63 RNPQTGEPVEIAASVAVKFSASKTLKDQVN 92


>UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2
          RepID=C0QI67_DESAH
          Length = 108

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 55/90 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+++ ++     DIS+  +   ++  +  + E+L++G+DV + GFG F V E+ AR G
Sbjct: 3  LTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARKG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP T +E+ + A +V +F+    L++ +N
Sbjct: 63 RNPATSEEMILPARRVITFKCSGKLRNLIN 92


>UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855
          RepID=Q2S2T0_SALRD
          Length = 100

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ LID+IA G  ++K      ++  + +V  ++KEG  + L  FG F V+ RA RTG
Sbjct: 3  MTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRTG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQT + + I     P FR    L +AV+
Sbjct: 63 RNPQTNEPVEIEDRYKPVFRPSDKLSEAVD 92


>UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus lactis
          RepID=Q02VJ4_LACLS
          Length = 103

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 45/67 (67%)

Query: 23 RALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAG 82
          + +DAI AS+TE L +   + ++ FGTF  K RA+R G NPQ G+ I I    VP+F+AG
Sbjct: 31 KVVDAITASITELLVQDGKIQMIDFGTFEKKTRASRGGFNPQVGERIQIPEKTVPTFKAG 90

Query: 83 KALKDAV 89
          K LK+AV
Sbjct: 91 KGLKEAV 97


>UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus lactis
          RepID=Q02ZW9_LACLS
          Length = 120

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 52/84 (61%)

Query: 3  KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
          K +LID +A   ++SK  A +A++A + ++T  + EG  V +  FGTF V++ AAR   +
Sbjct: 4  KQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISHD 63

Query: 63 PQTGKEITIAAAKVPSFRAGKALK 86
            + ++I +    +P FRAGKALK
Sbjct: 64 VHSREKILVGEQNIPVFRAGKALK 87


>UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=Proteobacteria
          RepID=Q602W2_METCA
          Length = 95

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 1  MNKSQLIDKIA--AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAAR 58
          MN+SQLI+ I   A   ++K    R L A+     E+L  GD+V + G     VKERAAR
Sbjct: 1  MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60

Query: 59 TGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          TGRNPQTG+ + I A +V      KALK+ V
Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERV 91


>UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA
          Length = 88

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 53/87 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +L   +AA + +S++ AG+A+DA+  +V  + K    VA+ GFGTF+ K R AR G
Sbjct: 1  MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKD 87
          RNP T + I I      +F+   ALKD
Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALKD 87


>UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3
          Tax=Desulfuromonadales RepID=B3EBV2_GEOLS
          Length = 93

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K++LI  +A    I+   A   ++ +I  +  +L+ G+ + +  FG F VKE+ AR G
Sbjct: 3  LTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARRG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ ITI   KV SF+    L+ A+N
Sbjct: 63 RNPQTGEAITIEPRKVISFKPSVLLRQAIN 92


>UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum
          DSM 43021 RepID=D2BF20_STRRD
          Length = 106

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI+K AA A +S+     AL+AI+ ++  ++   D VA+ GFG+F +  + ARTG
Sbjct: 12 MNKRELIEKAAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPARTG 71

Query: 61 RNPQTGKEITIAAAKVPSFR 80
          RNPQTG+ + IA      F+
Sbjct: 72 RNPQTGEPLEIAETWTAKFK 91


>UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria
          RepID=Q1D6M8_MYXXD
          Length = 127

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 7/94 (7%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKE----GDDVALVGFGTFAVKERA 56
          M +S+LI++I   A        R ++AI+ +V E + +    G  + L GFG F V+ R 
Sbjct: 1  MTRSELIERIVERAT---HVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRR 57

Query: 57 ARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          ARTGRNP+TG+ +++ A +  SF AGK L++ +N
Sbjct: 58 ARTGRNPKTGQRVSVPARRTLSFAAGKDLRERLN 91


>UniRef50_A0LI64 Histone family protein DNA-binding protein n=6
          Tax=Deltaproteobacteria RepID=A0LI64_SYNFM
          Length = 96

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS+LI+ +A    I+  AA  A++    S+  +L   D + + GFG+F VK      G
Sbjct: 1  MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I + + K+P F+ GK LK+ VN
Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERVN 90


>UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3
          Tax=Anaeromyxobacter RepID=B4UEN5_ANASK
          Length = 90

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K+ LI+K+ A   D+SK      +D++   + + +++     + GFGTF VK RA R 
Sbjct: 1  MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GRNPQTG EI IA  K   F+    LK A+
Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90


>UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1
          Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS
          Length = 94

 Score = 68.6 bits (166), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          + K+ LI ++    + ++KA A  +++A +    ++L  G D+ L GFG F VK++++R 
Sbjct: 3  LTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSRR 62

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNPQTG E+T+ A +V +F+    L+D +N
Sbjct: 63 GRNPQTGDELTLEARRVVTFKPSGILRDKIN 93


>UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales
           RepID=A4X4D0_SALTO
          Length = 237

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           +NK++LI+ +A      K A+  ALDA++  V  ++ +G+ V++ GFG F  + R ART 
Sbjct: 18  VNKAELIETLAVRLGDRKTASA-ALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTA 76

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG+ + +    VP+FR G   K+ V
Sbjct: 77  RNPRTGEAVKVKKTSVPTFRPGTGFKEMV 105


>UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae
          RepID=Q8SME4_CYAME
          Length = 112

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M+K++LI  +A    +SK      ++ I++ + + L  G  V LVGFGTF+ + RAAR G
Sbjct: 1  MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ + I    V  F  G  LK  V 
Sbjct: 61 RNPRTGERLIIPERHVVVFSPGSDLKQQVQ 90


>UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria
          RepID=IHFB_SINMW
          Length = 103

 Score = 68.2 bits (165), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+  +AA    +        ++A++  +T++L  G+ V L GFG F+VK R +R+
Sbjct: 1  MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG  + +    VP F+ GK L++ +N
Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLN 91


>UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellular organisms
           RepID=A5EU64_BRASB
          Length = 130

 Score = 68.2 bits (165), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 57/87 (65%)

Query: 4   SQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNP 63
           +++ +KIAA  D++KA A   +D++  ++ ++   G + +L GFG F VK+  AR GRNP
Sbjct: 34  NEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAREGRNP 93

Query: 64  QTGKEITIAAAKVPSFRAGKALKDAVN 90
            TG  I IAA++  +F   KA+KD++N
Sbjct: 94  STGATIAIAASRKLTFTPAKAIKDSLN 120


>UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=Candidatus
          Phytoplasma mali AT RepID=B3R0E2_PHYMT
          Length = 96

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK + I +++   + ++    + ++A+I  +  +L + + + + GFGTF VK R+ R G
Sbjct: 1  MNKIEFIKQLSDKLETTEKEGKKIINAVIDVIRINLLQNEKILITGFGTFCVKTRSEREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDA 88
          ++P+T + I I A K+PSF+  K  KD 
Sbjct: 61 KHPKTREIIKIPAKKIPSFKMSKRFKDV 88


>UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14
          Tax=Fusobacteriaceae RepID=C7N8X2_LEPBD
          Length = 93

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M+K + +D  A     +K  A   ++  + +V ESL +GD V  VG+GTF VKERAARTG
Sbjct: 1  MSKKEFVDAYAKATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAARTG 60

Query: 61 RNPQTGKEITI 71
           NPQT +EI I
Sbjct: 61 INPQTKEEIQI 71


>UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris
          ATCC 43183 RepID=B0NU55_BACSE
          Length = 101

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 49/85 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +L+D IA    ++K  + + L+ II  V E +K+   + L+GFGTF VK++ AR G
Sbjct: 1  MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           NP T   I I A +V  FR    L
Sbjct: 61 MNPSTFVPIEIPAKRVVYFRPSAYL 85


>UniRef50_C6JJT3 Predicted protein n=4 Tax=Fusobacterium RepID=C6JJT3_FUSVA
          Length = 111

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADI-SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K + ++     A I +K  A +   A I ++ E L +G++V+ +GFG F   ERAART
Sbjct: 6  MTKKEFVELFGTKAGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAART 65

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
            NPQT K + + A KV  FRAGK L + +N
Sbjct: 66 CVNPQTKKPMKVEAKKVAKFRAGKNLLEKMN 96


>UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1
          Tax=Candidatus Cloacamonas acidaminovorans
          RepID=B0VJA9_9BACT
          Length = 95

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 54/89 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ L+  I+    I +      +DA++ ++ +S+ +G+ + + GFGTF +K R  R G
Sbjct: 1  MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+T +++ + A  VP+F+  +  K+AV
Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAV 89


>UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria
          RepID=IHFB_THISH
          Length = 96

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+ +A   + ++      ++  ++  ++++L  GD + + GFG+F++  R  R 
Sbjct: 1  MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ +++    VP F+ GK L++ VN
Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERVN 91


>UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium RepID=C3WAE9_FUSMR
          Length = 106

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADI-SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K + ++   A A++ +K  A +   A + ++ E L +GD VA +GFG F   +RA RT
Sbjct: 1  MTKKEFVELFGAKAELKTKVEAEKLTKAFLETLEEVLVKGDSVAFIGFGKFEAAKRAERT 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
            NPQT K + IAA KV  F+ GK L + +N
Sbjct: 61 CINPQTKKPMKIAARKVAKFKPGKNLLEKMN 91


>UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaproteobacteria
          RepID=B9K3N0_AGRVS
          Length = 92

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 55/87 (63%)

Query: 4  SQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNP 63
          +++ DKIAA  ++ KA A   ++++   +TE+   G + ++  FG F +K+   R GRNP
Sbjct: 5  NEIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGRNP 64

Query: 64 QTGKEITIAAAKVPSFRAGKALKDAVN 90
           TG  I IAA+K  +F  GKA+KDA+N
Sbjct: 65 ATGATIKIAASKKLTFTPGKAVKDALN 91


>UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio
          RepID=B8DML6_DESVM
          Length = 95

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 47/75 (62%)

Query: 16 ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAK 75
          ++K +A +A DA  + + + +  G  V L G G F+V ERAARTGRNPQTG+ I+I A K
Sbjct: 20 VTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAARTGRNPQTGQSISIPARK 79

Query: 76 VPSFRAGKALKDAVN 90
             F A K L D +N
Sbjct: 80 AVKFMAAKTLVDGLN 94


>UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria
          RepID=IHFB_RALEJ
          Length = 137

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 15/98 (15%)

Query: 1  MNKSQLIDKIAA--------GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAV 52
          M KS+L++K+AA         ADIS       +  I+ +++++L +G  + + GFG+F +
Sbjct: 1  MTKSELVEKLAARFPQLLLRDADIS-------VKTILDAMSDALADGHRIEIRGFGSFGL 53

Query: 53 KERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
            R  R GRNP++G+ + +   +VP F+AGK L++ V+
Sbjct: 54 NRRPPRVGRNPKSGERVLVPEKRVPHFKAGKELRERVD 91


>UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 Tax=cellular
          organisms RepID=Q4ZXI2_PSEU2
          Length = 93

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K QLI  IA   D  K  A  AL+ +   V + L++G ++ L   G   V ER ARTG
Sbjct: 3  LTKDQLIADIAEAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPARTG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG  I IAA KV  F   K L D++N
Sbjct: 63 RNPSTGAAIEIAAKKVIKFVPAKVLTDSIN 92


>UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae
          RepID=B4S407_PROA2
          Length = 103

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 52/87 (59%)

Query: 3  KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
          K+ L++ I+    ++K      +D +  S+ +SLK G  + + GFG+F ++ +  R  RN
Sbjct: 7  KADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERLARN 66

Query: 63 PQTGKEITIAAAKVPSFRAGKALKDAV 89
          P+TG+++++ A  VP+F+  K  K AV
Sbjct: 67 PRTGEKVSVEAKNVPTFKISKEFKHAV 93


>UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 Tax=Rhodomicrobium
           vannielii ATCC 17100 RepID=D2LFF2_RHOVA
          Length = 126

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 53/85 (62%)

Query: 5   QLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQ 64
           QL  ++A    +S+  A   L   ++S+ + LK+G  + + G GT  V++RAARTGRNP 
Sbjct: 42  QLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTGRNPA 101

Query: 65  TGKEITIAAAKVPSFRAGKALKDAV 89
           TG+ I I A+K  +FRA K L +++
Sbjct: 102 TGEAIEIKASKKVAFRAAKDLSESI 126


>UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria
          RepID=IHFB_BORPD
          Length = 119

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI  +AA    ++      A+  ++ ++T++L  G  + + GFG+F++ +R+ R 
Sbjct: 1  MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G+++ +   +VP F+AGK L++ V+
Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVD 91


>UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms
          RepID=IHFB_CAUCN
          Length = 96

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI ++A     +++    R +  I+  +  +L++G  V L GFG  +V+ R ART
Sbjct: 1  MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + + A  VP F++GK L+  +N
Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLN 91


>UniRef50_Q4FQ67 Integration host factor subunit alpha n=10
          Tax=Gammaproteobacteria RepID=IHFA_PSYA2
          Length = 99

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + KS +I+ + +  ++++      ++     ++ESL +G +V L GFG F +K++ +R G
Sbjct: 4  LTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRPG 63

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ + ++A +V +F+ G+  +  V+
Sbjct: 64 RNPKTGEPVAVSARRVVTFKTGQKFRQQVD 93


>UniRef50_Q3M1G4 Histone-like DNA-binding protein n=1 Tax=Anabaena variabilis ATCC
          29413 RepID=Q3M1G4_ANAVT
          Length = 80

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 7/69 (10%)

Query: 28 IIASVTESLKEGDDVALVGFGTFAVKE-------RAARTGRNPQTGKEITIAAAKVPSFR 80
          I  +VTE++  GD V LVGFG+F  ++       R+ R GRNPQT ++ITI A K+P+F 
Sbjct: 10 ITTTVTEAVANGDKVTLVGFGSFERRDHEVCRRYRSEREGRNPQTNEKITIPATKIPAFS 69

Query: 81 AGKALKDAV 89
          AGK  ++ V
Sbjct: 70 AGKQFREKV 78


>UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides
          RepID=C6IB23_9BACE
          Length = 96

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 48/82 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K  LI  IA  +++ K      ++ ++ ++ E+L +G+ V LVGFGTF VKER AR G
Sbjct: 1  MKKIDLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAG 82
           N  TG+ +TI   K   F+ G
Sbjct: 61 YNLSTGEIMTIPGKKTVRFKPG 82


>UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=1 Tax=Fusobacterium
          periodonticum ATCC 33693 RepID=UPI0001BCAEAF
          Length = 90

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 51/85 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +L++ ++    I K    + LD +   +TE LK+G+D  L   GTF VK+RA + G
Sbjct: 1  MLKKELLNVLSEKLGIKKIETEKFLDTLEEVITEELKKGEDFNLGKLGTFKVKDRAEKNG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           NP+TG++I I A K  +F+A K L
Sbjct: 61 VNPKTGEKIVIPARKAVTFKASKNL 85


>UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria
           RepID=IHFA_BORA1
          Length = 116

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + K++L + +     ++K  A   +D     + E+L  GD V L GFG F V+++  R G
Sbjct: 12  LTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRPG 71

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG+ I IAA +V +F A + LK  V
Sbjct: 72  RNPKTGETIPIAARRVVTFHASQKLKSTV 100


>UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH
          Length = 90

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 52/89 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +LI ++A  A++ K      +DA+   + E L  G ++ L   G F ++E+AAR G
Sbjct: 1  MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + I A +   F   KALKDAV
Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALKDAV 89


>UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI
          Length = 105

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          +N+ QL+ ++A+  D +++  AG ALDA +  + ++L +G  V L GFG+F V+ R ART
Sbjct: 7  LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKD 87
            +P+TG+ + + AA    F   +AL++
Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRE 94


>UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergensis DSM 17361
          RepID=D1PUX5_9BACT
          Length = 94

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGD-DVALVGFGTFAVKERAART 59
          MNK+QLI  +A+  +ISKA A   ++ ++  + ++L EGD +VA+  FG F +K+ A R 
Sbjct: 1  MNKTQLIAALASKTEISKANAATYVNTLLGIIADNLCEGDREVAIPDFGRFFIKQLAERQ 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKAL 85
          G NP TG+ ITIAA +  +F A   L
Sbjct: 61 GVNPATGERITIAAREKVAFNASDNL 86


>UniRef50_Q12NT8 Integration host factor subunit alpha n=35
          Tax=Gammaproteobacteria RepID=IHFA_SHEDO
          Length = 99

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 55/89 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+++ + +     ++K  A   +++    + E+L+ G+ V L GFG F ++++  R G
Sbjct: 3  LTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRPG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG++I I+A +V +FR G+ LK  V
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARV 91


>UniRef50_C6HZV1 Putative integration host factor, alpha subunit HimA like protein
          n=1 Tax=Leptospirillum ferrodiazotrophum
          RepID=C6HZV1_9BACT
          Length = 104

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 1  MNKSQLIDKI---AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAA 57
          MN++ +++       G  + + A   ALD +I  +T S+  G+ V L GFGTF V++R  
Sbjct: 1  MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKAL 85
          R GRNP+TG+ + I + KV  FR  +  
Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRPTRHF 88


>UniRef50_B3DZP2 Bacterial nucleoid DNA-binding protein n=2 Tax=Verrucomicrobia
          RepID=B3DZP2_METI4
          Length = 99

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 1  MNKSQLIDKIA--AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAAR 58
           NK+ L++ +    G D +KA A +++DA+I  +   + +   V L+GFGTF V  R AR
Sbjct: 9  FNKASLVEVVQKNMGKDTTKALAEKSVDAVINGLKTGVLKNGIVQLIGFGTFRVITRKAR 68

Query: 59 TGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           G NP+TG++I I A+K   F  GK LK+ +
Sbjct: 69 MGVNPKTGEKIKIKASKTVRFSPGKELKEKL 99


>UniRef50_A8LLT5 Integration host factor subunit alpha n=28
          Tax=Alphaproteobacteria RepID=IHFA_DINSH
          Length = 101

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 56/89 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + +  L D +     +S+  + + +++I+  ++++L  G+ V +  FGTF+V++++AR G
Sbjct: 6  LTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARIG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+E+ I   +V +FR    +K+ V
Sbjct: 66 RNPKTGEEVPIHPRRVLTFRPSHLMKERV 94


>UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter
          sphaeroides ATCC 17025 RepID=A4WS11_RHOS5
          Length = 90

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +NKS L+  +A    +S+ A    LD  +  +  +++ GD + L GFG+F  + R ARTG
Sbjct: 4  LNKSDLVSTVAEKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPARTG 63

Query: 61 RNPQTGKEITIAAAK----VPSFRAG 82
          RNP+TG+ + I A+      PS R G
Sbjct: 64 RNPRTGEAVAIPASTSIGFTPSRRGG 89


>UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae
          RepID=Q1DCD2_MYXXD
          Length = 89

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 57/89 (64%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++L++ +AA   ++K +A + LD +  ++ +++K+    +  GFGT++V+ R AR  
Sbjct: 1  MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQT + + + A+K   FR  K LK+++
Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89


>UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales RepID=A6L5T8_BACV8
          Length = 94

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++L  KI+A            +++++  V ESL++G++V L GFG+F VK+RA +T 
Sbjct: 1  MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN      I I A  +P+F+  K L   VN
Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKELVKLVN 90


>UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=Magnetospirillum
          RepID=Q2WAF5_MAGSA
          Length = 89

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 54/89 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M+KS +   I   A  + A A  A++A++A++ E +K     +L+GFG+F+  ER AR G
Sbjct: 1  MSKSAMSKAIRQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TGK I IAA+    F    ALK ++
Sbjct: 61 RNPRTGKTIDIAASTSIKFSTSAALKKSL 89


>UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3
          Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC
          Length = 101

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ LI  ++  +D+SK  A  A++ I+  +T+ +  G  + + GFG F  K R  R G
Sbjct: 10 MKKTDLILNLSDSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQG 69

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+T +   +    VP F+ GK LK+ VN
Sbjct: 70 INPKTSERTQVGEKFVPFFKPGKLLKEIVN 99


>UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium RepID=C3WGU4_9FUSO
          Length = 92

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%)

Query: 13 GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIA 72
          G   ++  A + +D I  ++ ++L +G+D++++ +G   V ERA R GRNP+TG+E+ I 
Sbjct: 14 GVFTTRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRLGRNPKTGEEVNIG 73

Query: 73 AAKVPSFRAGKALKDAVN 90
            K   FR GKA  + +N
Sbjct: 74 ERKSVKFRPGKAFLEKLN 91


>UniRef50_B5JL43 DNA-binding protein HU n=1 Tax=Verrucomicrobiae bacterium DG1235
           RepID=B5JL43_9BACT
          Length = 104

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 17/105 (16%)

Query: 1   MNKSQLIDKIAA--GADISKAAAGRALDAIIASVTESLKEG------------DDVA--L 44
           MNKS+LI +I +  GA  SKA A +AL A+++S+  ++K+             D VA  L
Sbjct: 1   MNKSELIAEIQSNLGAS-SKAEAEKALSAVLSSIKTAVKKAGKEVKLRDKDSKDAVAIQL 59

Query: 45  VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           VGFGTF+V +R+ARTG NP T + + I A+K   F+AG  LKD +
Sbjct: 60  VGFGTFSVGKRSARTGINPLTKEPLKIKASKNVKFKAGAGLKDQL 104


>UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii
           RepID=B6KEZ7_TOXGO
          Length = 235

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + +  L+  +AA   + +A   + + A +  ++ SL++G  V+L  FG+  ++ R  R  
Sbjct: 121 VTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERVA 180

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG+++T+ A   P+F   K LKD V
Sbjct: 181 RNPRTGEQLTVPATTFPTFSFSKVLKDKV 209


>UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. SK209-2-6
          RepID=A4EV14_9RHOB
          Length = 94

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +N S LI  IA     S+ A    L A+   + ++ + G D  + G G F   ERAAR G
Sbjct: 4  LNYSGLIRAIAEETSQSQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERAARKG 63

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG EI IAA+   SF+  KA KD +N
Sbjct: 64 RNPSTGVEIEIAASSSLSFKPAKAAKDRLN 93


>UniRef50_A3VSB6 DNA-binding protein HU n=1 Tax=Parvularcula bermudensis HTCC2503
          RepID=A3VSB6_9PROT
          Length = 95

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 3/91 (3%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEG--DDVALVG-FGTFAVKERAA 57
          M+K++ I  +AA  D+S A A R ++ +   +   LK    D    +G FGTF + +R A
Sbjct: 1  MSKAEFISNVAAAGDMSNAEAKRMVELVFGEIEAGLKRAKKDGKYTIGTFGTFTITKRPA 60

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKALKDA 88
          R GRNP+TG+EI I A+K   FR    LK A
Sbjct: 61 RKGRNPRTGEEIKIKASKSLRFRPSSNLKAA 91


>UniRef50_A3RUQ6 DNA-binding protein HU n=4 Tax=Betaproteobacteria
          RepID=A3RUQ6_RALSO
          Length = 91

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 50/79 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +LI  +A  A+++K  A   L+A+  ++ ++++ G+++ +   G F   ERAA+TG
Sbjct: 1  MTKQELIKHLADKAEVTKGKAEDLLNALTETILDTVRAGNELTITDLGKFGSVERAAKTG 60

Query: 61 RNPQTGKEITIAAAKVPSF 79
          RNP+TG  I IAA + P F
Sbjct: 61 RNPKTGDVIAIAAKRAPKF 79


>UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 Tax=Bacteria
          RepID=D2Q2Y1_9ACTO
          Length = 97

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++L+  +AA A I +  A + LDA+   VTE++ +GD V+L G  +     RA RTG
Sbjct: 1  MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDA 88
          RNPQTG+ ++I A        G  LK A
Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAA 88


>UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria
           RepID=Q01W44_SOLUE
          Length = 108

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query: 3   KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
           K  +I+++     I+K  A  A++ +  S+ ++L++GD + L GFG F VK R    GRN
Sbjct: 22  KLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIGRN 81

Query: 63  PQTGKEITIAAAKVPSFRAGKALK 86
           P+TG E++I   K   F+ GK L+
Sbjct: 82  PRTGAEVSIPPGKAVRFKPGKELQ 105


>UniRef50_Q3EPN6 DNA-binding protein HU n=1 Tax=Bacillus thuringiensis serovar
          israelensis ATCC 35646 RepID=Q3EPN6_BACTI
          Length = 76

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          MNK++LI  +A  A+IS+  A   +  ++ S+T +L  G+ V L+GFGTF V+ERAART
Sbjct: 4  MNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAART 62


>UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepID=Q2SRR9_MYCCT
          Length = 90

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 58/89 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +LI++I    +ISK  A + ++ I  ++++ L EG +V++ GFG F + ER++R G
Sbjct: 1  MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP TG++I I A++   F+  K LK+++
Sbjct: 61 VNPSTGEKIIIPASRSARFKPAKQLKESL 89


>UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6
          Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA
          Length = 97

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+Q++++I     +        ++ ++  +  SL+ GDDV + GFG F V++++ R G
Sbjct: 3  LTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRRG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG  I + A KV +F     L+D +N
Sbjct: 63 RNPATGDSIILDARKVVTFTCSGVLRDRIN 92


>UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales
           RepID=IHFA_POLNA
          Length = 123

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + K+ L + +     ++K  +   +DA    +++ L EG DV + GFG F ++ +A R G
Sbjct: 13  LTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRPG 72

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ I I + +V +F A   LK+ + 
Sbjct: 73  RNPRTGEAIPIESRRVVTFHASHKLKEQIQ 102


>UniRef50_C1EA69 Predicted protein n=2 Tax=Micromonas RepID=C1EA69_9CHLO
          Length = 118

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 3   KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
           K+  +D +A+ A ISK  A  AL +++A +  ++  G+ V   GFG+F    RAARTG N
Sbjct: 29  KAWAVDLMASEAGISKKQAEIALKSLLAGIEGAVVAGERVTFQGFGSFESVARAARTGVN 88

Query: 63  PQT-GKEITIAAAKVPSFRAGKALKDAVN 90
           PQ   ++I I A+  P F+AG A K AVN
Sbjct: 89  PQNPTQKIKIPASMAPKFKAGSAFKSAVN 117


>UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4
          Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT
          Length = 93

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K  LI+ +A       K    +A+D ++ S+ E+L+E   V + GFG+F+V+ER ART
Sbjct: 1  MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           +NP+TGK + I   K   F   K+LKD +
Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGL 90


>UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria
          RepID=IHFB_HERAR
          Length = 101

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI ++A     +    A  A+  I+ +++++L  G  + + GFG+FA+  R  R 
Sbjct: 1  MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G ++ +   +VP F+ GK L++ V+
Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERVD 91


>UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2
          Tax=Acidithiobacillus ferrooxidans RepID=B5ERD0_ACIF5
          Length = 91

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 45/90 (50%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK + +  +A    +SK  A +       ++   L     +   GF TF V E+ AR G
Sbjct: 1  MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+EI I A K   F+AGK   D VN
Sbjct: 61 RNPATGQEIDIPAKKSIKFKAGKEFADKVN 90


>UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio
          aespoeensis Aspo-2 RepID=D1UA57_9DELT
          Length = 92

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 1  MNKSQLIDKIAA--GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAAR 58
          MNKS+L+D +        SK    +A++  +  + E L + D V + GFG+F     A R
Sbjct: 1  MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60

Query: 59 TGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           GRNP  G+ + I A K   F+ GKALK+AV
Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAV 91


>UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans
          lithotrophicus ES-1 RepID=C6P6T8_9PROT
          Length = 100

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          MN+S LI K+A    ++        +  I+  +  ++ +G+ V + GFG+F +  R  R 
Sbjct: 6  MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 65

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKD 87
          GRNP+TG +I +AA   P F+ GKALK+
Sbjct: 66 GRNPKTGAKIEVAAKYHPRFKPGKALKE 93


>UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14
          Tax=Alphaproteobacteria RepID=IHFA_SILPO
          Length = 100

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 51/74 (68%)

Query: 16 ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAK 75
          +S+  + + +++++  ++++L  G+ V +  FGTF+V++++AR GRNP+TG+E+ I   +
Sbjct: 21 LSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARVGRNPKTGEEVPIQPRR 80

Query: 76 VPSFRAGKALKDAV 89
          V +FR    +K+ V
Sbjct: 81 VLTFRPSHLMKERV 94


>UniRef50_C1DT75 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=3
          Tax=Sulfurihydrogenibium RepID=C1DT75_SULAA
          Length = 100

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 8/98 (8%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRAL--------DAIIASVTESLKEGDDVALVGFGTFAV 52
          M ++ +++ I    D++ +   R +        D I   +T  +KEG  V + GFGTF +
Sbjct: 1  MKRADIVNMIHKDKDLNLSLDKREIHKIVNDTFDMISEYLTTDIKEGKKVMISGFGTFII 60

Query: 53 KERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          K R  + GRNP+TG+E  I      SF+AGK LK  +N
Sbjct: 61 KRRKGKVGRNPKTGEEKLIPDRLGISFKAGKELKKKIN 98


>UniRef50_Q12P41 Histone-like DNA-binding protein n=9 Tax=Shewanella
          RepID=Q12P41_SHEDO
          Length = 94

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK QLI  ++     S+      L+ ++AS+ ++L EG+ V L  FGTF +  R  +  
Sbjct: 1  MNKQQLIASMSRQLQQSQRQTKMELEQVLASIKQALIEGEKVFLPQFGTFELSYRLPQIA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          R+PQTG  I +    VP  +    LK A+N
Sbjct: 61 RHPQTGASIEVEGQNVPRIKFSPNLKAALN 90


>UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3
          Tax=Methylobacterium sp. 4-46 RepID=B0UCA4_METS4
          Length = 102

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M ++QLI ++AA    +    A   + A++  +TE+L EGD + L GFG      R AR 
Sbjct: 1  MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ + + A +  +FRA + + + +N
Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERLN 91


>UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria
          RepID=IHFB_BURTA
          Length = 107

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ ++A+    +    A  A+  ++ +++++L +G  + + GFG+F +  R AR 
Sbjct: 1  MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G+++ +    VP F+ GK L++ V+
Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERVD 91


>UniRef50_C7LVH5 Histone family protein DNA-binding protein n=1
          Tax=Desulfomicrobium baculatum DSM 4028
          RepID=C7LVH5_DESBD
          Length = 101

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 8/90 (8%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ LI ++ A    S+  A R +DA++ S+TESL +GD + L G GT AV ER+ R G
Sbjct: 10 VEKADLIARLKAEMGYSEEEAERVVDAMMESITESLSKGDKINLPGIGTMAVVERSLRKG 69

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           +  TG++I         F  GK LKDA+ 
Sbjct: 70 EDHSTGRDI--------KFSPGKRLKDALT 91


>UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria
          RepID=IHFA_NITOC
          Length = 99

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ + + +     ++K  A   ++     +  +L++G+ V L GFG F ++++  R G
Sbjct: 3  LTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERPG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+EI I A +V +FR G+ LK  V 
Sbjct: 63 RNPKTGEEIPITARRVVTFRPGQKLKARVE 92


>UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacteridae
          RepID=DBH1_BIFLO
          Length = 93

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 54/89 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           NKS L+ KIA  ++++KA A  A++A      E++K G+ + L G  +    +RAARTG
Sbjct: 3  YNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG++I I A+      AG  LK AV
Sbjct: 63 RNPRTGEQIDIPASYGVRISAGSLLKKAV 91


>UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabacteroides
          johnsonii DSM 18315 RepID=B7BF96_9PORP
          Length = 99

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++++ +IA      K      ++A + SV  ++ EG++V L GFG+F +K RA +  
Sbjct: 1  MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN      I I A  +P+F+  KA  D VN
Sbjct: 61 RNISQNTTIVIPAHSIPAFKPSKAFADMVN 90


>UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum
          thermopropionicum SI RepID=A5CZA3_PELTS
          Length = 92

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKI-AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K   ++ + AAG   + A A RALDA+  ++T +    + V L GFG F +++R+ R 
Sbjct: 1  MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GR+ +TG+ I+I A KV  F+ GKAL+ AV
Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAV 90


>UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria
          RepID=IHFB_NITEC
          Length = 105

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI K+A     +    A   +  I+ ++ +SL  G+ + + GFG+F +  R +R 
Sbjct: 1  MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G+++ +    VP F+AGK +++ ++
Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELID 91


>UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus Pelagibacter
          RepID=Q4FLU7_PELUB
          Length = 102

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K  LI+ I      SK  +   +D  + ++ ++LK    + L  FGTF+++ + +R G
Sbjct: 8  LTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 67

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T ++ TI+   V  F+A K  KD VN
Sbjct: 68 RNPKTKEQTTISNRDVVLFKASKEFKDLVN 97


>UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi
          RepID=Q5LM20_SILPO
          Length = 91

 Score = 61.6 bits (148), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 47/90 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+QL+  +A      K  A  ALDA+ A +T  +  G  V L G G    +ER  R  
Sbjct: 1  MTKTQLVAALAEDMGSDKKTASAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERQV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+  T AA KV      KALKD+VN
Sbjct: 61 RNPATGETFTKAADKVVKMTIAKALKDSVN 90


>UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter
          succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS
          Length = 124

 Score = 61.6 bits (148), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K  LI +IA      +      ++  +  + E L EG+ + + GFGTFA K R AR  
Sbjct: 4  ITKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARPA 63

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ + I    VP+F+    +KD +N
Sbjct: 64 RNPRTGETVLIDERLVPTFKFSNDIKDKIN 93


>UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio
          acetiphilus DSM 12809 RepID=C1SGM2_9BACT
          Length = 91

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ +++ I     ++K    + +D +   V + +   ++V + GFG F VK+R  R G
Sbjct: 1  MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG E  I    V  FR  +  KD VN
Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEVN 90


>UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Desulfovibrio
          vulgaris RepID=Q72CZ7_DESVH
          Length = 95

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 1  MNKSQLIDKIA-----AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKER 55
          MN+ +L+  +       G  I++    R LD         L EG DV L   G     ER
Sbjct: 1  MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60

Query: 56 AARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          AAR GRNP+TG+ I I A +V +F+AGK L++A+
Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94


>UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1
          Tax=Alicyclobacillus acidocaldarius subsp.
          acidocaldarius DSM 446 RepID=C8WVU7_ALIAD
          Length = 90

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +L+ ++ A   + K+   + L+      TE L+ G++V+L   G F    R+AR  
Sbjct: 1  MNKGELVAEVQARVGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARRQ 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ I +       FR   ALK  VN
Sbjct: 61 RNPQTGEMIDVPEKATVRFRPSGALKGRVN 90


>UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii
          DSM 20697 RepID=B7AFK0_9BACE
          Length = 106

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  +AA + +    A + + A    + + +  G+ ++  G G F V+E  AR G
Sbjct: 1  MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP TG  + I   KV  F  GK+L++AV
Sbjct: 61 RNPFTGLGMRIPTRKVVKFSPGKSLREAV 89


>UniRef50_A3EV93 Putative integration host factor, alpha subunit HimA like n=2
          Tax=Leptospirillum sp. Group II RepID=A3EV93_9BACT
          Length = 98

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 1  MNKSQLIDKIAAGADISKAAA---GRALDAIIASVTESLKEGDDVALVGFGTFAVKERAA 57
          M +  ++ +I    + S+  A   G+  D I+  ++ +L+ G+DV + GFGTF V++   
Sbjct: 1  MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKAL 85
          R GRNP+TG+ + I A     F   ++L
Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSL 88


>UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora
          acidiphila DSM 44928 RepID=C7Q397_CATAD
          Length = 167

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +NK+ L  ++A     ++  A + +DA+   +   +  G+ V ++GFGTF   +RAAR G
Sbjct: 2  VNKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLG 61

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG  I + A   P F AG+  +  V
Sbjct: 62 RNPQTGAAIQVPAGTSPRFHAGQTFRTRV 90


>UniRef50_D0RNW1 Integration host factor subunit alpha (IHF-alpha) n=1 Tax=alpha
          proteobacterium HIMB114 RepID=D0RNW1_9RICK
          Length = 95

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%)

Query: 3  KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
          +  L D       ISK    + +D +  S+ ++ +EG+ V +  FG+F VK++ AR GRN
Sbjct: 7  RQDLYDLTYKELGISKNECIKFVDLVFESILKNFEEGNKVKVSLFGSFDVKDKKARIGRN 66

Query: 63 PQTGKEITIAAAKVPSFRAGKALKDAVN 90
          P+T +E  I++ +V +F+  K L   +N
Sbjct: 67 PKTKEEKEISSRRVVTFKPSKFLSKKIN 94


>UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 Tax=Persephonella
          marina EX-H1 RepID=C0QR54_PERMH
          Length = 96

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 5/95 (5%)

Query: 1  MNKSQLIDKIAAG--ADISKAAAGRALDAIIASVTESLKEGDD---VALVGFGTFAVKER 55
          M K+++++ I      ++SK      ++AI   + + L  G+D   V + GFGTF VK+R
Sbjct: 1  MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60

Query: 56 AARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          A + GRNP+T +E  I      SF+AGK LK++++
Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKESLS 95


>UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Tax=Bacteria
           RepID=Q6KHG3_MYCMO
          Length = 108

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + K  LI  IA   + SK      ++A +  ++  L     + L  FG F + ERAAR+G
Sbjct: 18  ITKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARSG 77

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
            NP+T + I I A K   F+  K+LKD VN
Sbjct: 78  INPKTSEIIQIKATKSVKFKVSKSLKDQVN 107


>UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio
          yellowstonii DSM 11347 RepID=B5YLD8_THEYD
          Length = 94

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ L++ I     + +    + ++ +  ++ E+L+E + V + GFG F V+ + +R G
Sbjct: 1  MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T + + I   KV +FR  + LK ++ 
Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSIQ 90


>UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidales
          RepID=A6LHR2_PARD8
          Length = 95

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+ +L+  +A    +++A A R + A   + TE+L+    + L+GFGT +  E+  R G
Sbjct: 1  MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+ G    I A K   F+ GK L   +N
Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLLLKQLN 90


>UniRef50_D0LVE2 Histone family protein DNA-binding protein n=1 Tax=Haliangium
           ochraceum DSM 14365 RepID=D0LVE2_HALO1
          Length = 105

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 11/101 (10%)

Query: 1   MNKSQLIDKIAA----GADISKAAAGRALDAIIASVTESL-------KEGDDVALVGFGT 49
           M K +LID++ A     A+++K A G  +  +   +++         K        GFGT
Sbjct: 1   MTKQELIDRVYAKYGKPANLTKKAVGDIIGGVFEELSDYFVKEKVTKKLTPRFTFPGFGT 60

Query: 50  FAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           F  K R AR GR+PQTG EITI A    +F  G  LK  +N
Sbjct: 61  FTKKHREARKGRHPQTGAEITIGATDTLTFSIGSDLKATMN 101


>UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter
          alkaliphilus AHT 1 RepID=C0GE87_9FIRM
          Length = 84

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ +   IA   +I    A   ++ +I ++TESL  G+ V L GFGTF ++    R  
Sbjct: 1  MIKTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAA 60

Query: 61 RNPQTGKEITIAAAKVPSFRA 81
          RNP+TG+ + + A   P+FRA
Sbjct: 61 RNPKTGETVQVPATHYPTFRA 81


>UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular
          organisms RepID=IHFA_TOLAT
          Length = 106

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ + + +     ISK  A   ++     +  +L+ G+ V + GFG F ++ +  R G
Sbjct: 3  LTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERPG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG++I I A +V +FR G+ LK  V
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1 Tax=Bacteroides
          fragilis 3_1_12 RepID=UPI0001B4AA8F
          Length = 97

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 46/90 (51%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +LI+ IA  A+I+K     A++       E++  GD + + GFGT + K R A+  
Sbjct: 1  MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN   G  + +    VP F+  KA K  VN
Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQVN 90


>UniRef50_B2IE05 Histone family protein DNA-binding protein n=2
           Tax=Alphaproteobacteria RepID=B2IE05_BEII9
          Length = 171

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 16  ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAK 75
           IS+  A R +  +++ +TE+L  G++V L  FG F ++ +  R GRNP+TG    I   +
Sbjct: 87  ISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRIGRNPRTGVAAVIPPRR 146

Query: 76  VPSFRAGKALKDAVN 90
           V  F+A K L D +N
Sbjct: 147 VLKFKASKVLLDRLN 161


>UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
          3989 RepID=B7CAU3_9FIRM
          Length = 95

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 47/89 (52%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NK  L   ++   ++SK  A  A+D I   ++++L     V +  FG F + +R +R G 
Sbjct: 6  NKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRMGI 65

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP T + + I A K+P FR  + LK+  N
Sbjct: 66 NPVTKERMMIQATKLPKFRPSQTLKNKCN 94


>UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax=Deinococcus
           RepID=Q1J3J9_DEIGD
          Length = 149

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%)

Query: 3   KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
           K+QL+D +A    ++K  +  A+ A++  V +++K+G  V L G GT +VK  AARTG  
Sbjct: 53  KTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGVR 112

Query: 63  PQTGKEITIAAAKVPSFRAGKALKDAV 89
           P T + I I A K  +F+    LK ++
Sbjct: 113 PGTSERIQIPAGKKVAFKVASTLKSSL 139


>UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID=DBH_DEIRA
          Length = 122

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 3   KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
           K+QL++ +A    ++K  +  A+ +++  V  +L+ G  V L G GT +VKE AARTG  
Sbjct: 36  KTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGVR 95

Query: 63  PQTGKEITIAAAKVPSFRAGKALK 86
           P T ++I I A K  +F+    LK
Sbjct: 96  PGTSEKIQIPAGKKVAFKVASTLK 119


>UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales
          RepID=IHFA_RHOP2
          Length = 123

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 49/85 (57%)

Query: 6  LIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQT 65
          L + +     +S+  +   ++ ++  +T+ L++G+ V L  FG+F V+++  R GRNP+T
Sbjct: 13 LCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIGRNPKT 72

Query: 66 GKEITIAAAKVPSFRAGKALKDAVN 90
          G E+ I+  +V  F+    LK  +N
Sbjct: 73 GTEVPISPRRVMVFKPSAILKQRIN 97


>UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding protein n=8
           Tax=Rhizobiales RepID=C5B6T6_METEA
          Length = 163

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 1   MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
           M +S+L+ ++AA    + +      + A++A + ++L  GD V + GFG F+ K+  AR 
Sbjct: 59  MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118

Query: 60  GRNPQTGKEITIAAAKVPSFRAGKALKD 87
           GRNP+TG+ + +A  K   FR GK ++ 
Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQ 146


>UniRef50_UPI0001BC8A49 single-stranded binding protein n=2 Tax=Pseudomonas syringae
          group RepID=UPI0001BC8A49
          Length = 104

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K QL+  IA   D  K  A +AL+ +   V + L+ G ++ L G G   V ER ARTG
Sbjct: 3  LTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPARTG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG  I IAA K   F   K L D++N
Sbjct: 63 RNPSTGAAIEIAAKKAIKFVPAKVLNDSIN 92


>UniRef50_Q9ZL08 DNA-binding protein HU n=24 Tax=Epsilonproteobacteria
          RepID=DBH_HELPJ
          Length = 94

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          MNK++ ID +  AG   SK  A  A++A   +V  +L +G+ V LVGFG F   E+  + 
Sbjct: 1  MNKAEFIDLVKKAGKYNSKREAEEAINAFTLAVETALSKGESVELVGFGKFETAEQKGKE 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          G+ P + K       +VP F+ GK LK  V
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90


>UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter
          succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS
          Length = 116

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K +++D+IA+    ++      ++ +I +++  + EG+++ L GFG F  K+R  R  
Sbjct: 8  ITKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRT 67

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ + I A   P F   K L + +N
Sbjct: 68 RNPKTGELVNIPAKVRPVFEPSKDLIEKIN 97


>UniRef50_Q02AB3 Histone family protein DNA-binding protein n=3 Tax=Bacteria
          RepID=Q02AB3_SOLUE
          Length = 100

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + ++QL+ ++A  A+++   A   LD + A+    +K+     L G G     +R AR G
Sbjct: 6  LTQTQLVRQLAEKAEVNNKVARALLDNLAATAISEVKKNGVFVLPGIGRLVRVDRKARMG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP TG+ I IAA KV  FR  K+ KDA+
Sbjct: 66 RNPATGEAIKIAAKKVVKFRVAKSAKDAI 94


>UniRef50_B2UQF2 Histone family protein DNA-binding protein n=1 Tax=Akkermansia
          muciniphila ATCC BAA-835 RepID=B2UQF2_AKKM8
          Length = 90

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 1  MNKSQLIDKIA--AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAAR 58
          MNK+Q I ++    G D++   A  AL+A++ ++  +++    V   GFGTF VK R AR
Sbjct: 1  MNKTQFIRELQRELGNDVTSRQAEHALNAVLETIARAVRRRSLVKFRGFGTFRVKRRRAR 60

Query: 59 TGRNPQTGKEITIAAAKVPSFRAGKAL 85
            R+P+ G  + +  +K   FR    L
Sbjct: 61 IVRHPENGGRLLVHESKTMKFRPSSLL 87


>UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium roseum DSM 5159
          RepID=B9KZB7_THERP
          Length = 92

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 56/89 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS LI  +A   +  ++     ++A+  ++ E+L +G++V++ GFGTF V ERA R G
Sbjct: 1  MRKSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+T + I I A + PSFR G  LK AV
Sbjct: 61 RNPRTNEPIEIPARRSPSFRPGTQLKRAV 89


>UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 Tax=Hirschia
          baltica ATCC 49814 RepID=C6XIY2_HIRBI
          Length = 103

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + ++ ++DK+ +   +++  +   L+ ++  V E L   + V L  FG F V+ + AR G
Sbjct: 6  ITRADIVDKLVSEVGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNARVG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TGKE  I A +V +F+    ++  V
Sbjct: 66 RNPKTGKEAPITARRVVTFKPSPLMRRRV 94


>UniRef50_A4YW83 Integration host factor subunit alpha n=41
          Tax=Alphaproteobacteria RepID=IHFA_BRASO
          Length = 119

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 48/85 (56%)

Query: 6  LIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQT 65
          L + +     +S+  +   ++ ++  +T+ L+ G+ V L  FG+F V+++  R GRNP+T
Sbjct: 13 LCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIGRNPKT 72

Query: 66 GKEITIAAAKVPSFRAGKALKDAVN 90
          G E+ I+  +V  F+    LK  +N
Sbjct: 73 GTEVPISPRRVMVFKPSAILKQRIN 97


>UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio
          desulfuricans subsp. desulfuricans str. G20
          RepID=Q30VZ6_DESDG
          Length = 95

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 42/78 (53%)

Query: 13 GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIA 72
          G   +  A    + A +  +T  L  GD V L GFG F V  R AR GRNP+TG+ + I 
Sbjct: 18 GIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRRTARIGRNPKTGEPVEIP 77

Query: 73 AAKVPSFRAGKALKDAVN 90
          A+    F  GK LK+A+N
Sbjct: 78 ASTGVKFSPGKTLKEALN 95


>UniRef50_Q2NJP6 DNA-binding protein HU n=12 Tax=Candidatus Phytoplasma
          RepID=Q2NJP6_AYWBP
          Length = 96

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVG-FGTFAVKERAART 59
          M K +LI  IA     S +       +   ++ ES+   ++V L    G F +K R A T
Sbjct: 1  MTKKELIKNIAEANKTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAYT 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GRNPQTGK++ I A  + +F+  K +KD V
Sbjct: 61 GRNPQTGKKLKIPAKTIVTFKLSKTIKDKV 90


>UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 Tax=Akkermansia
          muciniphila ATCC BAA-835 RepID=B2UMR7_AKKM8
          Length = 101

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K  L++KI+A  + ++      +   +  ++ +L EGD V +  FGTF VKE   + G
Sbjct: 5  LTKRDLVNKISAETNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVKPKVG 64

Query: 61 RNPQT-GKEITIAAAKVPSFRAGKALKDAV 89
          RNP+   +++ I A  V  F+ GK LKD V
Sbjct: 65 RNPKNPDQDVPIPARSVVKFKVGKELKDQV 94


>UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6
          Tax=Cystobacterineae RepID=A7H8A7_ANADF
          Length = 126

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS LI+ +     +++  A   ++ I  S+ ++L  G+++ + G G F VK      G
Sbjct: 1  MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I +   +   FR GK L+D VN
Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRVN 90


>UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=1
          Tax=Agrobacterium radiobacter K84 RepID=B9JPN0_AGRRK
          Length = 117

 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + ++ +   I     +S+  +   +D I+  +  +L  G++V L  F  F V+E++ R G
Sbjct: 6  LTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRRPG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG++  IAA +V SF A  A+K  + 
Sbjct: 66 RNPKTGEDYQIAARRVISFTASDAVKTQIQ 95


>UniRef50_A0L712 Histone family protein DNA-binding protein n=5 Tax=Magnetococcus
          sp. MC-1 RepID=A0L712_MAGSM
          Length = 91

 Score = 58.2 bits (139), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS+LI  IAA   ++K  A   +D + + + ++L +G+ V L GFG F  + R  R  
Sbjct: 1  MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+++ + +     F+ G  ++  V+
Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRVD 90


>UniRef50_B7J8S4 DNA-binding protein HU family protein n=1 Tax=Acidithiobacillus
          ferrooxidans ATCC 23270 RepID=B7J8S4_ACIF2
          Length = 91

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%)

Query: 25 LDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKA 84
          +  ++ S+ E + EG  V +  FGTF    RAAR GRNPQTG E+ I   KV +F+A K+
Sbjct: 30 VQHLVESIVELVSEGHKVRIHQFGTFQQIHRAARMGRNPQTGGELEIPERKVLTFKASKS 89


>UniRef50_UPI0000382BC5 COG0776: Bacterial nucleoid DNA-binding protein n=1
          Tax=Magnetospirillum magnetotacticum MS-1
          RepID=UPI0000382BC5
          Length = 74

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 36/52 (69%)

Query: 39 GDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GD V L GFG F+VK R AR GRNP+TG+ ++++   +P F+ GK ++  +N
Sbjct: 12 GDRVELRGFGAFSVKRREARRGRNPRTGESVSVSEKAIPVFKTGKEMRLRLN 63


>UniRef50_Q8UG61 Integration host factor subunit alpha n=29
          Tax=Alphaproteobacteria RepID=IHFA_AGRT5
          Length = 112

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + ++ L + +     +S+  +   ++ II  +  ++  G+ V L  F TF ++E+  R G
Sbjct: 6  VTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+E+ I+  +V +F+A   LK  +
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKQRI 94


>UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=Mycoplasma
          synoviae 53 RepID=Q4A5S4_MYCS5
          Length = 91

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 44/90 (48%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++ I  ++    ++     R  D  +  + E L  G+ V L   G F V  RA RT 
Sbjct: 1  MTKTEFIKAVSDKTGLTVGELNRVFDGFVYVLQEQLVAGEKVQLSNLGIFDVATRAERTI 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +N  TGKE  +AA KV  ++  K L D VN
Sbjct: 61 KNHFTGKEQVVAAKKVVKYKPSKYLTDVVN 90


>UniRef50_Q0BUC1 DNA-binding protein HU n=16 Tax=Acetobacteraceae RepID=Q0BUC1_GRABC
          Length = 100

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           M+K+ +   I   A+++  AA R  + +I ++ + +K+     L  FGTF V++  AR G
Sbjct: 12  MSKAFIAQVIQDSAELTGVAANRTANDLITAIVKEMKKNGKFTLPSFGTFTVRKTKARKG 71

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
            NP+TG++I + A K   F+A   LK +V
Sbjct: 72  LNPRTGEQIKVKAGKTVRFKASPNLKKSV 100


>UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylobacterium
           extorquens AM1 RepID=C5B569_METEA
          Length = 140

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           M  ++L   +A    +      R + A ++ V E L  G+DV L GFG F V++R AR  
Sbjct: 45  MTLAELESVLAGRLGLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARRR 104

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           ++P+ G+E+ + A +   FR  + L++A+N
Sbjct: 105 KDPRDGRELEVPARRGAVFRPSRLLREALN 134


>UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria (class)
          RepID=DBH1_STRCO
          Length = 93

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDD-VALVGFGTFAVKERAART 59
          MN+S+L+  +A  A++++  A   L A    V + + +GD+ V + GF TF    RAART
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDA 88
           RNPQTG+ I I A       AG  LK+A
Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89


>UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabacteroides
          RepID=A7AIP7_9PORP
          Length = 91

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+SQLI+ +A    ++K    R +D +   + + +KEG  + L GFG+F  + +++R  
Sbjct: 1  MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN + G  + ++   +  F+    L + +N
Sbjct: 61 RNLKNGTAVQLSPRTIIHFKCAPHLLEQMN 90


>UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing
          symbionts RepID=A5CWF3_VESOH
          Length = 109

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K  + + +    DI+   A          + ++L  G+ V L  FG F ++E+++R G
Sbjct: 3  ITKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRVG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDA 88
          RNP+TG+ + I+A +V  F++G  LK A
Sbjct: 63 RNPKTGEMVEISARRVVVFKSGPKLKLA 90


>UniRef50_Q2SSG4 DNA-binding protein, HU n=1 Tax=Mycoplasma capricolum subsp.
          capricolum ATCC 27343 RepID=Q2SSG4_MYCCT
          Length = 92

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +LI+KIA   ++SK      +  +   ++++L +  +V +  FG F + ++ +R G
Sbjct: 1  MTKKELINKIALETEVSKKEVNLIVKKVFELISKNLLDKKEVLISDFGKFTILQKVSRKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP T +++ I A+K   F+  K LK+ +
Sbjct: 61 VNPITRQKMVIPASKTVKFKPSKQLKELL 89


>UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=Kytococcus
          sedentarius DSM 20547 RepID=C7NGK9_KYTSD
          Length = 106

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 1  MNKSQL---IDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAA 57
          MNK+ L   ++ I  G    +  A + +D ++ ++   +  G  V L GFGTF   ERA 
Sbjct: 1  MNKADLARILEPIVGG----QGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAP 56

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RTGRNP+TG+ + I     P FR     +  V
Sbjct: 57 RTGRNPRTGEVVRIPGTAGPRFRPSPMFRGFV 88


>UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum
          ferrodiazotrophum RepID=C6HU01_9BACT
          Length = 99

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS L  ++A     I+   A   +D  + ++ E L  GD V +  FG   V E+A R 
Sbjct: 1  MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDA 88
          GRNP+TG  + I A K   F+ G+ALK+A
Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNA 89


>UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2QWH5_9PLAN
          Length = 180

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + K +++  I+    +++      +     ++ E+L E   + L  FG F VKERAAR  
Sbjct: 57  VTKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARKA 116

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG+ + +A   V +F+ GK +++ V
Sbjct: 117 RNPRTGQPVYVAEKFVVTFKPGKEMEEKV 145


>UniRef50_B1A4K2 Integration host factor subunit A-like protein n=2
          Tax=Gammaproteobacteria RepID=B1A4K2_9GAMM
          Length = 112

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query: 25 LDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKA 84
          +D     + ++L +G++V L GFG F ++++ AR GRNP+T   + I A +V +F A ++
Sbjct: 27 VDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARPGRNPKTKVPVEITARRVVTFHASQS 86

Query: 85 LKDAVN 90
          LK   N
Sbjct: 87 LKGHCN 92


>UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 Tax=Beijerinckiaceae
           RepID=B2ICU5_BEII9
          Length = 122

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 2   NKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
            ++ L+D I      +S+A      +  +  ++E+L  G+ V L  FG F+V+ +  R G
Sbjct: 21  TRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG 80

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG E+ I   +V +F+A   L  +VN
Sbjct: 81  RNPRTGVEVPIKPRRVLTFKASPVLAASVN 110


>UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia
          stuttgartiensis RepID=Q1Q201_9BACT
          Length = 103

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%)

Query: 3  KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
          K  L +KIA   D +     + +   +  +   L +G+ + L  FG F +++RAAR  RN
Sbjct: 6  KRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARKARN 65

Query: 63 PQTGKEITIAAAKVPSFRAGKALKDAV 89
          P+TG+   + +  V  F+ GK +++ V
Sbjct: 66 PRTGEVAFVPSKNVVVFKVGKLMREKV 92


>UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidum RepID=DBH_TREPA
          Length = 105

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +S ++D +    D+S+    R +D+ ++ VT +L+ G+ V L  FG F  + R A  G+
Sbjct: 7  TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          + +TG+ ++I +  V  FR  K LK AV 
Sbjct: 67 SIKTGEVVSIPSHCVVVFRPSKRLKSAVR 95


>UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 Tax=cellular
          organisms RepID=C7M6F9_CAPOD
          Length = 104

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++++ KI+    + K      ++  +  V  +L+ G +V L GFG+F +K RA +TG
Sbjct: 1  MTKAEIVSKISDKLGLDKNDVQLTVENFMNEVINTLESGQNVYLRGFGSFIIKTRAEKTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RN      + I A  +P+F+  K   + V
Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAKVFVEGV 89


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID...   135   5e-31
UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID...   132   4e-30
UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi...   128   6e-29
UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH...   128   6e-29
UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D...   128   7e-29
UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel...   125   3e-28
UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ...   125   3e-28
UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep...   125   5e-28
UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa...   125   5e-28
UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B...   124   6e-28
UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri...   123   1e-27
UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH   123   2e-27
UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re...   123   2e-27
UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT       122   3e-27
UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A...   122   3e-27
UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D...   120   1e-26
UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter...   120   1e-26
UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ...   120   1e-26
UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ...   120   1e-26
UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T...   120   2e-26
UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al...   119   3e-26
UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ...   119   3e-26
UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T...   118   4e-26
UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba...   118   4e-26
UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr...   118   7e-26
UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr...   118   7e-26
UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D...   118   7e-26
UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr...   118   8e-26
UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ...   117   9e-26
UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par...   117   1e-25
UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R...   117   1e-25
UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al...   117   1e-25
UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ...   117   2e-25
UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T...   117   2e-25
UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P...   116   2e-25
UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D...   115   3e-25
UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia...   115   3e-25
UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l...   115   4e-25
UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T...   115   5e-25
UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios...   115   5e-25
UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba...   115   5e-25
UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R...   115   6e-25
UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga...   115   6e-25
UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr...   114   7e-25
UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID...   114   7e-25
UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C...   114   8e-25
UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha...   114   1e-24
UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr...   114   1e-24
UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re...   113   1e-24
UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete...   113   1e-24
UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie...   113   1e-24
UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T...   113   1e-24
UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr...   113   2e-24
UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr...   113   2e-24
UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce...   113   2e-24
UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba...   112   3e-24
UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr...   112   3e-24
UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al...   112   3e-24
UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact...   112   4e-24
UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T...   112   4e-24
UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=...   111   8e-24
UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube...   110   1e-23
UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr...   110   1e-23
UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil...   110   1e-23
UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G...   110   1e-23
UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH   110   1e-23
UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin...   110   2e-23
UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale...   110   2e-23
UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria...   110   2e-23
UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ...   109   2e-23
UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr...   109   3e-23
UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso...   109   3e-23
UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ...   109   3e-23
UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 T...   109   3e-23
UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr...   109   3e-23
UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 T...   109   3e-23
UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc...   109   3e-23
UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga...   108   4e-23
UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI...   108   4e-23
UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0...   108   4e-23
UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter...   108   4e-23
UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a...   108   5e-23
UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ...   108   6e-23
UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p...   108   7e-23
UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr...   108   7e-23
UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ...   108   8e-23
UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G...   107   9e-23
UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=ro...   107   1e-22
UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto...   107   1e-22
UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=P...   107   1e-22
UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopi...   107   2e-22
UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B...   106   2e-22
UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand...   106   2e-22
UniRef50_Q6ANC3 Related to integration host factor, alpha subuni...   106   2e-22
UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T...   106   2e-22
UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T...   106   3e-22
UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T...   106   3e-22
UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D...   106   3e-22
UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 T...   105   3e-22
UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep...   105   3e-22
UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu...   105   4e-22
UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ...   105   4e-22
UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti...   105   4e-22
UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ...   105   4e-22
UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T...   105   4e-22
UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T...   105   5e-22
UniRef50_A0L712 Histone family protein DNA-binding protein n=5 T...   105   5e-22
UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T...   105   5e-22
UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D...   105   6e-22
UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G...   105   6e-22
UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bactero...   105   7e-22
UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T...   104   8e-22
UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ...   104   8e-22
UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacterida...   104   8e-22
UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R...   104   8e-22
UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A...   104   8e-22
UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 T...   104   9e-22
UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T...   104   9e-22
UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T...   104   1e-21
UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding p...   104   1e-21
UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A...   103   1e-21
UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein...   103   1e-21
UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctom...   103   1e-21
UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T...   103   2e-21
UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 ...   103   2e-21
UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A...   103   2e-21
UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re...   103   2e-21
UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone...   103   2e-21
UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T...   103   2e-21
UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo...   103   2e-21
UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 ...   102   3e-21
UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T...   102   3e-21
UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria...   102   3e-21
UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T...   102   3e-21
UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace...   102   3e-21
UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ...   102   3e-21
UniRef50_B1A4K2 Integration host factor subunit A-like protein n...   102   4e-21
UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla...   102   4e-21
UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen...   102   4e-21
UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi...   102   5e-21
UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr...   102   5e-21
UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R...   102   5e-21
UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=...   101   6e-21
UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T...   101   7e-21
UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteob...   101   7e-21
UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellul...   101   7e-21
UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_...   101   7e-21
UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria Re...   101   8e-21
UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Ta...   101   8e-21
UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ...   101   8e-21
UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 T...   101   9e-21
UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph...   101   9e-21
UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T...   100   1e-20
UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidale...   100   1e-20
UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 T...   100   1e-20
UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T...   100   1e-20
UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th...   100   1e-20
UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=B...   100   1e-20
UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Des...   100   2e-20
UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T...   100   2e-20
UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T...   100   2e-20
UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T...   100   3e-20
UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabac...   100   3e-20
UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet...    99   3e-20
UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 T...    99   3e-20
UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=D...    99   3e-20
UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=A...    99   3e-20
UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T...    99   4e-20
UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta...    99   4e-20
UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=R...    99   6e-20
UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacte...    98   7e-20
UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria Re...    98   7e-20
UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bactero...    98   7e-20
UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobact...    98   7e-20
UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 ...    98   8e-20
UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T...    98   9e-20
UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida...    98   9e-20
UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S...    98   1e-19
UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 T...    97   1e-19
UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell...    97   1e-19
UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=...    97   1e-19
UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi...    97   1e-19
UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s...    97   2e-19
UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1...    97   2e-19
UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabac...    97   2e-19
UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T...    97   2e-19
UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 T...    97   2e-19
UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2...    96   2e-19
UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=...    96   3e-19
UniRef50_C8X523 Histone family protein DNA-binding protein n=2 T...    96   3e-19
UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri...    96   3e-19
UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfo...    96   4e-19
UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide...    96   4e-19
UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytop...    95   5e-19
UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T...    95   5e-19
UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=K...    95   5e-19
UniRef50_B7JAF9 Integration host factor, alpha subunit, putative...    95   7e-19
UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Ca...    95   8e-19
UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax...    95   8e-19
UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 T...    95   8e-19
UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=...    95   8e-19
UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium Re...    95   9e-19
UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaprote...    94   1e-18
UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteri...    94   1e-18
UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P...    94   1e-18
UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T...    94   1e-18
UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 ...    94   2e-18
UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepI...    94   2e-18
UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. S...    94   2e-18
UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 T...    94   2e-18
UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 T...    94   2e-18
UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=M...    93   2e-18
UniRef50_A7HII4 Histone family protein DNA-binding protein n=4 T...    93   3e-18
UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=C...    93   3e-18
UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 ...    93   3e-18
UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergen...    93   3e-18
UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ...    93   3e-18
UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus...    93   3e-18
UniRef50_A3EV93 Putative integration host factor, alpha subunit ...    93   3e-18
UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II...    93   3e-18
UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=A...    93   3e-18
UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 ...    92   4e-18
UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus...    92   4e-18
UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=...    92   4e-18
UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabac...    92   4e-18
UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 T...    92   4e-18
UniRef50_B3DWZ9 Bacterial nucleoid DNA-binding protein n=1 Tax=M...    92   4e-18
UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptun...    92   4e-18
UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylo...    92   5e-18
UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteri...    92   5e-18
UniRef50_B7B9I2 Putative uncharacterized protein n=3 Tax=Parabac...    92   5e-18
UniRef50_A3VSB6 DNA-binding protein HU n=1 Tax=Parvularcula berm...    92   6e-18
UniRef50_C6HZV1 Putative integration host factor, alpha subunit ...    92   7e-18
UniRef50_A3ER44 Putative integration host factor, beta-subunit n...    92   7e-18
UniRef50_Q98RC2 DNA-BINDING PROTEIN HU n=2 Tax=Mycoplasma RepID=...    92   7e-18
UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID...    92   7e-18
UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 T...    92   8e-18
UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales Rep...    91   8e-18
UniRef50_C6ZBE9 DNA binding protein HU n=7 Tax=Bacteroides RepID...    91   9e-18
UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=M...    91   1e-17
UniRef50_B8II37 Histone family protein DNA-binding protein n=1 T...    91   1e-17
UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus...    91   1e-17
UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 ...    91   1e-17
UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=...    91   1e-17
UniRef50_D0RNW1 Integration host factor subunit alpha (IHF-alpha...    91   1e-17
UniRef50_C5VHN4 HimA protein n=9 Tax=Prevotella RepID=C5VHN4_9BACT     90   2e-17
UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium Rep...    90   2e-17
UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium...    90   2e-17
UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidu...    90   2e-17

Sequences not found previously or not previously below threshold:

UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabac...    93   2e-18

>UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD
          Length = 90

 Score =  135 bits (340), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ LI+ +A  A++SK  A +A+DA+  S+T +LKEG  V LVGFG+F V+ER+AR G
Sbjct: 1  MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+EI I A K P+F+ GK LKDAVN
Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAVN 90


>UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU
          Length = 92

 Score =  132 bits (332), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 71/89 (79%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+ +A  +++SK  A +A+D++  ++ ++LK GD + L+GFG F V+ER+AR G
Sbjct: 1  MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI I A+KVP+F+ GKALKDAV
Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAV 89


>UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms
          RepID=DBH_XYLFT
          Length = 94

 Score =  128 bits (322), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 73/89 (82%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LID +AA A++SK  AGRA+DA++  +TE+LKEGD V LVGFGTF V++RA R G
Sbjct: 1  MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ I IAA+  PSF+ GKALKDAV
Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAV 89


>UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD
          Length = 90

 Score =  128 bits (322), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 65/89 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI ++A    +SK  AG  ++ +   + ESL +GD V L+GFG F V+ERAAR G
Sbjct: 1  MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI IAA K P+F+AGK LKDAV
Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAV 89


>UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC
          Length = 90

 Score =  128 bits (322), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/89 (61%), Positives = 70/89 (78%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ LI+ +A  AD++K  AG A+DA+  S+  SL +G+ V L+GFG F V+ERAAR G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTGKEI I A+KVP+F+AGKALKDAV
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAV 89


>UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms
          RepID=IHFB_HALHL
          Length = 102

 Score =  125 bits (316), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+ IA+    ++      A+  ++  ++E+L  G  + + GFG+F++  R AR 
Sbjct: 1  MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + + A  VP F+ GK L++ VN
Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERVN 91


>UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria
          RepID=B1I182_DESAP
          Length = 91

 Score =  125 bits (316), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 67/89 (75%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI  +A   +++K  A +AL A++ S+ E+L  GD V LVGFGTF  +ERAAR G
Sbjct: 1  MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI IAA KVP F+AGK L+++V
Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89


>UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH
          Length = 91

 Score =  125 bits (315), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/90 (55%), Positives = 72/90 (80%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS L+  I+  ++++KA + RALDA+  ++T +L  GD+VA+ GFG+F V++RAARTG
Sbjct: 1  MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ I I A+KVP+F+AGK LK++VN
Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESVN 90


>UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544
          RepID=C9KMW2_9FIRM
          Length = 91

 Score =  125 bits (314), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 68/90 (75%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+  +A  A ++K  A +A+ AI  S+ ++L EGD V ++GFGTF VKER+AR G
Sbjct: 1  MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T + I I A+K P+F+AGKALKDAVN
Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALKDAVN 90


>UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria
           RepID=Q2W3I2_MAGSA
          Length = 136

 Score =  124 bits (313), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 65/88 (73%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           NK+ L+  +A  A +SKA A +A+D +  ++T +LK GD+V LVGFGTFAV  RAA  GR
Sbjct: 48  NKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEGR 107

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+TG++I+I A+K P F+AGK LKD +
Sbjct: 108 NPRTGEKISIPASKQPKFKAGKGLKDGI 135


>UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria
          RepID=DBH5_RHILE
          Length = 91

 Score =  123 bits (311), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+  +A  A ++K+ A  A+DA+   V   LK   D+ L GFG+F V  RAA  G
Sbjct: 1  MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG E+ I A  VP F  GK LKDAVN
Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVN 90


>UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH
          Length = 89

 Score =  123 bits (310), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/89 (68%), Positives = 74/89 (83%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID IAA AD+ KAAAG+ALD +I ++TE+LK+GD V LVGFG+F V ERA R G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+EITI +AK P FR GKALKDA+
Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALKDAL 89


>UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5
          Length = 90

 Score =  123 bits (309), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/90 (73%), Positives = 75/90 (83%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID IAA AD+ KAAAGRALDA+I SVT +LK GD V LVGFGTF+V +R AR G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTGK + IAAAK P F+AGKALK+AVN
Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90


>UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT
          Length = 98

 Score =  122 bits (308), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 65/90 (72%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L++ ++  + +SK      LD  +A++ +SLK+G+ VALVGFGTF   ++ ARTG
Sbjct: 1  MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ + I A  VP F AGK+L++A++
Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAID 90


>UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria
           RepID=Q2W5P8_MAGSA
          Length = 117

 Score =  122 bits (308), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           MNK  L++K+A  + +SKAAA   +DA  A++T +LK GDDV LVGFG+F+V +RAA+ G
Sbjct: 27  MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG  I IAA+K P F AGK LKDAVN
Sbjct: 87  RNPRTGATIKIAASKAPKFTAGKGLKDAVN 116


>UniRef50_Q1D6D8 Integration host factor subunit alpha n=24
          Tax=Deltaproteobacteria RepID=IHFA_MYXXD
          Length = 129

 Score =  120 bits (303), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 57/90 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ +I+ +      SK  +   ++ +  ++ E+L+ GD + + GFG F V+++ AR G
Sbjct: 1  MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTGKEI I+A +V +FR  + LK A+N
Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSALN 90


>UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria
          RepID=Q5ZUE2_LEGPH
          Length = 100

 Score =  120 bits (303), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 69/89 (77%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+L+D IA+G+ ++KA A R L+  +A+VT+ LK+GD V + GFG+F+   R+ARTG
Sbjct: 9  MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 68

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTGK I I A++V  F+AGK LK+AV
Sbjct: 69 RNPQTGKTIQIKASRVAKFKAGKNLKEAV 97


>UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA
          Length = 91

 Score =  120 bits (302), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI  IA  A++SK AA   ++A ++ VT+ LK+G+DV LVGFGTF   + A R G
Sbjct: 1  MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ +TIAA K P FR+GKALKDAVN
Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAVN 90


>UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root
          RepID=DBH2_BACSU
          Length = 92

 Score =  120 bits (302), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/89 (51%), Positives = 65/89 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI K+A    +SK     +++ +  +++E+LK G+ V++ GFGTF V+ERAAR G
Sbjct: 1  MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI I A K P+F+  KALKDAV
Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAV 89


>UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria
          RepID=A1AW42_RUTMC
          Length = 91

 Score =  120 bits (302), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 67/90 (74%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID IA  A++SK  A RAL+A   ++T ++   D V L GFG+F V+ RAARTG
Sbjct: 1  MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG  I I A+KV +F+AGKALK+AVN
Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAVN 90


>UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria
          RepID=IHFB_OLICO
          Length = 106

 Score =  119 bits (300), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ +IA     + +      ++AI+  +  +L  GD V L GFG F+VK R AR 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+ GK +++ +N
Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLN 91


>UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria
          RepID=Q0AI99_NITEC
          Length = 90

 Score =  119 bits (299), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/90 (66%), Positives = 71/90 (78%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI+ IA  ADI+KA AG ALD  ++++ ++L + D V LVGFGTF V ERAARTG
Sbjct: 1  MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG EI I AAKVP F AGKALKDAVN
Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90


>UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria
          RepID=A4JQB1_BURVG
          Length = 92

 Score =  118 bits (298), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LID +AAGA +SK+ A + + A++ ++T+++   + V L+GFG F+  +R+ARTG
Sbjct: 1  MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+EI IAAA    F AGKA KDAVN
Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAVN 90


>UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria
          RepID=IHFB_THISH
          Length = 96

 Score =  118 bits (298), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+ +A   + ++      ++  ++  ++++L  GD + + GFG+F++  R  R 
Sbjct: 1  MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ +++    VP F+ GK L++ VN
Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERVN 91


>UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria
          RepID=IHFB_PSEPK
          Length = 100

 Score =  118 bits (296), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADI-SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI++I     + S      A+  ++  +++ L  GD + + GFG+F++  RA R 
Sbjct: 1  MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ +++    VP F+ GK L+D VN
Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVN 91


>UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria
          RepID=IHFB_PARL1
          Length = 110

 Score =  118 bits (296), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ ++A     + +    R +  I   ++ +L  GD V L GFG F+VK R ART
Sbjct: 1  MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+ GK L++ +N
Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERLN 91


>UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN
          Length = 90

 Score =  118 bits (296), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 71/89 (79%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ LID IA  A+++K  A  AL+A + ++T SLKEG+ V L+GFGTF V ERAARTG
Sbjct: 1  MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG EI IAA+KVP+F +GKALKDA+
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAI 89


>UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria
          RepID=IHFB_BORPD
          Length = 119

 Score =  118 bits (296), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI  +AA    ++      A+  ++ ++T++L  G  + + GFG+F++ +R+ R 
Sbjct: 1  MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G+++ +   +VP F+AGK L++ V+
Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVD 91


>UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms
          RepID=DBHA_AERHY
          Length = 90

 Score =  117 bits (295), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/89 (74%), Positives = 72/89 (80%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+QL+D IAA AD+SKA A  AL+ II  +T+SLKEGD V LVGFGTF V  RA RTG
Sbjct: 1  MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTGKEI IAAA VPSF AGKALKDAV
Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAV 89


>UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula
          bermudensis HTCC2503 RepID=A3VQA5_9PROT
          Length = 113

 Score =  117 bits (294), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ ++A     +      + + AI   ++ +L++GD V L GFGTF+VK R ART
Sbjct: 1  MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+AGK +++ +N
Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERLN 91


>UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS
          Length = 92

 Score =  117 bits (294), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/90 (53%), Positives = 62/90 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LID +AA    SKA  G  LD ++  + +++ +GD V L+GFG+F   +RAARTG
Sbjct: 1  MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I I AAK   F AGKA KDAVN
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVN 90


>UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria
          RepID=IHFB_SINMW
          Length = 103

 Score =  117 bits (293), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+  +AA    +        ++A++  +T++L  G+ V L GFG F+VK R +R+
Sbjct: 1  MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG  + +    VP F+ GK L++ +N
Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLN 91


>UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales
          RepID=A6TJN4_ALKMQ
          Length = 92

 Score =  117 bits (293), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ L+ K+A  ++++K  A  AL++ + SV E+L +GD V LVGFGTF V+ER  R G
Sbjct: 1  MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60

Query: 61 RNPQTGKE-ITIAAAKVPSFRAGKALKDAVN 90
          RNP+  ++ I I A+K P F+AGK LK+ +N
Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKIN 91


>UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus
          Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE
          Length = 112

 Score =  117 bits (293), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 57/90 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ LI++++   ++++  +   ++AI  S+  SL+ GD + + GFG+F  ++R  R G
Sbjct: 1  MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG  + + A K+P F+  K LKD VN
Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELKDVVN 90


>UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria
           RepID=IHFA_BORA1
          Length = 116

 Score =  116 bits (292), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 51/89 (57%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + K++L + +     ++K  A   +D     + E+L  GD V L GFG F V+++  R G
Sbjct: 12  LTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRPG 71

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG+ I IAA +V +F A + LK  V
Sbjct: 72  RNPKTGETIPIAARRVVTFHASQKLKSTV 100


>UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA
          Length = 91

 Score =  115 bits (290), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/90 (53%), Positives = 63/90 (70%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI  +A  + ++K  A  AL A+I SV E+L++G+ V LVGFGTF  +ERAAR G
Sbjct: 1  MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T + I I A  VP F+AGK  KD VN
Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKVN 90


>UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia
          RepID=Q2J6X1_FRASC
          Length = 94

 Score =  115 bits (290), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 60/89 (67%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKSQL+D+IA   +  ++ A +A+DA+  ++ E++  G+ V + GFG F   ERAARTG
Sbjct: 1  MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP TG+ + +AA+ VP FR G   K +V
Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSV 89


>UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968
          RepID=D1RMX6_LEGLO
          Length = 92

 Score =  115 bits (290), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 63/90 (70%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  I+  + +SK  +  AL+A+I+ +TE L +GD + L GF + +VKE  ARTG
Sbjct: 1  MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+ I IAA+KV SF+ G  LK+A+N
Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAIN 90


>UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio
          vulgaris RepID=A1VFK7_DESVV
          Length = 91

 Score =  115 bits (289), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/90 (52%), Positives = 62/90 (68%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADI-SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K++L++KI A A + +KA A  ALDA IA + +++  G+ V   GFG+F V +RAAR 
Sbjct: 1  MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GRNP+TG+EI I A KV  F  GK LKDAV
Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAV 90


>UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae
          RepID=Q8SME4_CYAME
          Length = 112

 Score =  115 bits (289), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 51/89 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M+K++LI  +A    +SK      ++ I++ + + L  G  V LVGFGTF+ + RAAR G
Sbjct: 1  MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + I    V  F  G  LK  V
Sbjct: 61 RNPRTGERLIIPERHVVVFSPGSDLKQQV 89


>UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria
          RepID=Q3A4K6_PELCD
          Length = 92

 Score =  115 bits (289), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 58/90 (64%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID +A    ++   A   ++ ++ +++++L EG  + + GFG+  VK+  A  G
Sbjct: 1  MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+EI +   K+P F+ GK L++ +N
Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERIN 90


>UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE
          Length = 90

 Score =  115 bits (288), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 60/90 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +L   IA  AD++K  A R L+A++  +T +L   D V LVGFGTF  + R ARTG
Sbjct: 1  MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +NPQTG+ + I A+   +F+ GKAL+DAVN
Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAVN 90


>UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria
          RepID=IHFB_AERS4
          Length = 94

 Score =  115 bits (288), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS LI+++AA    +       A+  I+  +  +L+ GD + + GFG+F++  RA R 
Sbjct: 1  MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG ++ +    VP F+ GK L++ VN
Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91


>UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria
          RepID=Q1D6M8_MYXXD
          Length = 127

 Score =  114 bits (287), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M +S+LI++I      + +      + A+   ++++L  G  + L GFG F V+ R ART
Sbjct: 1  MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ +++ A +  SF AGK L++ +N
Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERLN 91


>UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO
          Length = 91

 Score =  114 bits (287), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/88 (55%), Positives = 65/88 (73%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NK  LI K+A   +++K  +  A+D + +S+   L +G+ V L+GFG F V+ERAAR GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NPQTG EI IAA+KVP+F+AGKALKDAV
Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAV 90


>UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6
          Length = 93

 Score =  114 bits (287), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 63/90 (70%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI  +A  + ++K  A  AL A I SV E+L+ G+ V LVGFGTF  +ERA R G
Sbjct: 1  MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T +EITI A+  P F+AGK LK+ VN
Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKVN 90


>UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1
          Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum) RepID=C4K6F1_HAMD5
          Length = 114

 Score =  114 bits (286), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+QLID+IA  A I+K  A   L+ I+  +TESLK+ + V LVGFGTF VK R AR  
Sbjct: 1  MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+ I + A  VPS    KALKDA+
Sbjct: 61 RNPQTGEPIELPACYVPSLNFAKALKDAL 89


>UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria
          RepID=IHFB_RALEJ
          Length = 137

 Score =  114 bits (286), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L++K+AA    +    A  ++  I+ +++++L +G  + + GFG+F +  R  R 
Sbjct: 1  MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G+ + +   +VP F+AGK L++ V+
Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVD 91


>UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE
          Length = 92

 Score =  113 bits (285), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 60/90 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK + ++ +A   D+S+A A RAL  ++  + E +  G+ VA  GFG+F V ERA RTG
Sbjct: 1  MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG  I IAA++VP F AG  LK A+N
Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAIN 90


>UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella
          bronchiseptica RepID=Q7WDC5_BORBR
          Length = 93

 Score =  113 bits (285), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 52/90 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K  LI  ++     S+      +D + ++++E L  G++  L G G F+  +RAARTG
Sbjct: 3  LTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAARTG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ + IAA+    F A K LKD VN
Sbjct: 63 RNPQTGEPVEIAASVAVKFSASKTLKDQVN 92


>UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi
           RepID=A5CCR4_ORITB
          Length = 125

 Score =  113 bits (285), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1   MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
           +NK++ ++ I     +++KA   RAL+ I+  V ++++ G D+ +VGFG+F V+ RAAR 
Sbjct: 34  LNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAARD 93

Query: 60  GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           G NP+TG +I I  +    F+ GK LKDA N
Sbjct: 94  GHNPKTGAKIIIPESYQVVFKPGKTLKDACN 124


>UniRef50_C8QX16 Histone family protein DNA-binding protein n=1
          Tax=Desulfurivibrio alkaliphilus AHT2
          RepID=C8QX16_9DELT
          Length = 95

 Score =  113 bits (285), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ LI ++    ++SK+ A   ++  ++   +SL+EG+D+ L GFG F+VK++ +R G
Sbjct: 3  LTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRRG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+E+ +A  +V +F+    L+  VN
Sbjct: 63 RNPQTGEELMLAPRRVITFKPSGLLRQRVN 92


>UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria
          RepID=IHFB_BURTA
          Length = 107

 Score =  113 bits (284), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ ++A+    +    A  A+  ++ +++++L +G  + + GFG+F +  R AR 
Sbjct: 1  MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G+++ +    VP F+ GK L++ V+
Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERVD 91


>UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria
          RepID=IHFB_RHOCS
          Length = 93

 Score =  113 bits (283), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI ++A     + +    + +  I   +T++L  GD V L GFG F+VK+R AR 
Sbjct: 1  MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    +P F+ GK L++ +N
Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLN 91


>UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms
          RepID=IHFB_CAUCN
          Length = 96

 Score =  113 bits (283), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI ++A     +++    R +  I+  +  +L++G  V L GFG  +V+ R ART
Sbjct: 1  MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + + A  VP F++GK L+  +N
Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLN 91


>UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria
          RepID=IHFA_NITOC
          Length = 99

 Score =  112 bits (282), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 52/89 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ + + +     ++K  A   ++     +  +L++G+ V L GFG F ++++  R G
Sbjct: 3  LTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERPG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+EI I A +V +FR G+ LK  V
Sbjct: 63 RNPKTGEEIPITARRVVTFRPGQKLKARV 91


>UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria
          RepID=IHFB_HERAR
          Length = 101

 Score =  112 bits (282), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI ++A     +    A  A+  I+ +++++L  G  + + GFG+FA+  R  R 
Sbjct: 1  MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G ++ +   +VP F+ GK L++ V+
Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERVD 91


>UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria
          RepID=IHFB_BRUMB
          Length = 94

 Score =  112 bits (282), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+  IA+    + +      + A+   +T +L EG+ V L GFG F+VK R AR+
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+ GK L+D +N
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLN 91


>UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria
           RepID=Q7WX14_RALEH
          Length = 114

 Score =  112 bits (281), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/91 (45%), Positives = 65/91 (71%), Gaps = 1/91 (1%)

Query: 1   MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
           M K++LI+ IAAG   ++KA A  AL+  + ++ +++ +GD ++LVGFGTF+  ERA R 
Sbjct: 22  MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81

Query: 60  GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
            RNP+TG+EI + AA+   F+AG+  ++AVN
Sbjct: 82  ARNPRTGEEIKVEAARTVKFKAGQRFREAVN 112


>UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1
          Tax=Thermomonospora curvata DSM 43183
          RepID=D1A9C1_THECD
          Length = 159

 Score =  112 bits (281), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 55/89 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++LI+ +AA A    A A R +DA+  ++ + +  G+ V + GFGTF    R ART 
Sbjct: 1  MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + +   + P FRAG+  KD V
Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRV 89


>UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular
          organisms RepID=IHFA_TOLAT
          Length = 106

 Score =  111 bits (278), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ + + +     ISK  A   ++     +  +L+ G+ V + GFG F ++ +  R G
Sbjct: 3  LTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERPG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG++I I A +V +FR G+ LK  V
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855
          RepID=Q2S2T0_SALRD
          Length = 100

 Score =  110 bits (277), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ LID+IA G  ++K      ++  + +V  ++KEG  + L  FG F V+ RA RTG
Sbjct: 3  MTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRTG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQT + + I     P FR    L +AV+
Sbjct: 63 RNPQTNEPVEIEDRYKPVFRPSDKLSEAVD 92


>UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium
          tumefaciens RepID=IHFB_AGRT9
          Length = 102

 Score =  110 bits (277), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+D +AA    + +  A  A+DA++  +T +L+ G+ V +  FGTF V+ R AR+
Sbjct: 1  MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP  G  + I    VP FRAGK ++D +N
Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLN 91


>UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae
           BRL-230010 RepID=UPI0001693F3B
          Length = 114

 Score =  110 bits (277), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 61/90 (67%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           MNK QL++ +A  +  SK  A +A+  ++ S+ E+LK+G +V LVGFG F V+ R AR G
Sbjct: 23  MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RN +TG+E+ + A KVP F AG  LK A+N
Sbjct: 83  RNRKTGEEVELPAGKVPVFTAGITLKKALN 112


>UniRef50_Q12ND8 Integration host factor subunit beta n=185
          Tax=Gammaproteobacteria RepID=IHFB_SHEDO
          Length = 95

 Score =  110 bits (276), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+K+A   + +S      A+  ++  +  +L+ GD + + GFG+F++  RA RT
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG  + +    VP F+ GK L++ V+
Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERVD 91


>UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH
          Length = 91

 Score =  110 bits (276), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  +   AD++K  A   ++    S+TE+L   + V + G  +F +KE  + TG
Sbjct: 1  MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG ++TI A K+P F+ GK LK+ V+
Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERVD 90


>UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis
          RepID=B2RHA9_PORG3
          Length = 88

 Score =  110 bits (275), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 57/85 (67%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+  I  +A  A+++KA A RA++A    VTE +  G+ +AL+GFGTF+V ERAAR G
Sbjct: 1  MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           NP+T K I+I A KV  F+ G  L
Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTL 85


>UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales
          RepID=A6LB49_PARD8
          Length = 94

 Score =  110 bits (275), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+ +A    + K  A + LDA I  VTE + E +++ LVGFGT   + +  R  
Sbjct: 1  MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG  + I A     F+ GK L +A+N
Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFLLEAMN 90


>UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria
          RepID=Q0AZ79_SYNWW
          Length = 110

 Score =  110 bits (275), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 61/85 (71%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+L+  +A  A+I++  A + LDA++ S+ ++L  GD V ++GFG+F V++R  R  
Sbjct: 1  MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           +P TGKEIT+ A KVP+F+ GK+L
Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85


>UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14
          Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG
          Length = 101

 Score =  109 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 61/90 (67%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +L   IA  AD++K  A + L+AI+ S+T +L + D V LVGFGTF  + R ARTG
Sbjct: 1  MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +NPQTG+ + I A+   +F+ GK LKD+VN
Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLKDSVN 89


>UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria
          RepID=IHFB_NITEC
          Length = 105

 Score =  109 bits (274), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI K+A     +    A   +  I+ ++ +SL  G+ + + GFG+F +  R +R 
Sbjct: 1  MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G+++ +    VP F+AGK +++ ++
Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELID 91


>UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani
          RepID=Q3J6Y8_NITOC
          Length = 94

 Score =  109 bits (273), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 65/89 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L++ +   A++S+A A RA++A+  ++T  L E   V LVGFG+F+V++RAAR+G
Sbjct: 1  MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R+PQ+G+ I I A   P+F+  KALK+ V
Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKEIV 89


>UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria
           RepID=B1XSK3_POLNS
          Length = 106

 Score =  109 bits (273), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 67/90 (74%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           +NK++LI  IA  A+ISKA A  AL++ I ++ +++ +GD V L+GFGTFA  +RAAR G
Sbjct: 13  LNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ + IAAAK   F AGKA KD+VN
Sbjct: 73  RNPKTGEPLKIAAAKTVKFSAGKAFKDSVN 102


>UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1
          Tax=Alicyclobacillus acidocaldarius subsp.
          acidocaldarius DSM 446 RepID=C8WVU7_ALIAD
          Length = 90

 Score =  109 bits (273), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 47/90 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +L+ ++ A   + K+   + L+      TE L+ G++V+L   G F    R+AR  
Sbjct: 1  MNKGELVAEVQARVGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARRQ 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ I +       FR   ALK  VN
Sbjct: 61 RNPQTGEMIDVPEKATVRFRPSGALKGRVN 90


>UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria
          RepID=Q39VS3_GEOMG
          Length = 91

 Score =  109 bits (273), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ ++++I      SK  +   ++ +   + E+L+ G+ + + GFG F VKE+A R G
Sbjct: 1  MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG EI I+A ++ +F+  + LK ++N
Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSIN 90


>UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 Tax=Ralstonia
          pickettii 12D RepID=C6BPZ9_RALP1
          Length = 94

 Score =  109 bits (273), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+  L   IA  ++ S A   R LDA    VT+++  GD V ++GFGTF+   R AR G
Sbjct: 1  MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP TG+EI + A     F AG  L+ AVN
Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAVN 90


>UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC
          29149 RepID=A7AXT3_RUMGN
          Length = 92

 Score =  109 bits (273), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M +S LI  IA     +++  A   +   + S+ ++L  GD V  VGFG+F V+ERA RT
Sbjct: 1  MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNPQ G EI I  +K   F+AGK LKD VN
Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKVN 91


>UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms
          RepID=DBH1_RHILE
          Length = 91

 Score =  108 bits (272), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+  +A  A ++KA A  A+DA+  +V   LK G D+ L GFG+F+V  R A  G
Sbjct: 1  MNKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG E+ I A  VP F AGK LKDAVN
Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90


>UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM
          Length = 91

 Score =  108 bits (272), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 66/90 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN  +L   +A    +S+A AGRA+ A + +++ESL +   V+L+GFGTF+V ERAAR G
Sbjct: 1  MNLGELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG++I I+A++   F+AG++L++ VN
Sbjct: 61 RNPQTGEKINISASRTIRFKAGQSLREKVN 90


>UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2
          Length = 96

 Score =  108 bits (272), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/91 (52%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+L+  IA  +++SK  + RAL+A I +V E+L +G+ V LVGFGTF  +ER AR G
Sbjct: 1  MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60

Query: 61 RNPQTGKE-ITIAAAKVPSFRAGKALKDAVN 90
          RNP+  +E I I A+  P F+AGK+LK+AVN
Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAVN 91


>UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria
          RepID=Q121G1_POLSJ
          Length = 103

 Score =  108 bits (272), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 65/90 (72%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++LID IAA  D+SKAA GR L+ ++ ++ +++K+GD V LVGFGTF   +RAARTG
Sbjct: 1  MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +NP+TG+ + I A  VP F AG   K  V+
Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVVD 90


>UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation n=34 Tax=root
          RepID=B3R809_CUPTR
          Length = 92

 Score =  108 bits (272), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K++LID IAAG   ++KA A +AL+  ++++ +++ +GD ++L+GFGTF+  ER  R 
Sbjct: 1  MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+EI + AAK   F+AG+  KDAVN
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91


>UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae
          RepID=B4S407_PROA2
          Length = 103

 Score =  108 bits (270), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 52/88 (59%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K+ L++ I+    ++K      +D +  S+ +SLK G  + + GFG+F ++ +  R  R
Sbjct: 6  TKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERLAR 65

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NP+TG+++++ A  VP+F+  K  K AV
Sbjct: 66 NPRTGEKVSVEAKNVPTFKISKEFKHAV 93


>UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA
          replication and in rpo translation n=3
          Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT
          Length = 89

 Score =  108 bits (270), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 58/89 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+QL+  +A  ++++K  A  AL ++   +T+SL EGD V + GFGTFA+    ARTG
Sbjct: 1  MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG  I I  A    F+A KALKD +
Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALKDVL 89


>UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria
          RepID=IHFB_MANSM
          Length = 94

 Score =  108 bits (270), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+ +      IS  +   A+  I+  ++++L+ GD + + GFG+F++  R  R 
Sbjct: 1  MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG ++ + A  VP F+AGK L++ V+
Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERVD 91


>UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms
          RepID=DBH_GUITH
          Length = 93

 Score =  108 bits (270), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKSQLI KIA     SK    + + +++  + +++  G+ V LVGFG+F  +ER AR G
Sbjct: 1  MNKSQLISKIAYYTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+++ + A+++P+F  G   ++ VN
Sbjct: 61 RNPRTGEKLFLPASRIPTFSVGNFFRNKVN 90


>UniRef50_Q12NT8 Integration host factor subunit alpha n=35
          Tax=Gammaproteobacteria RepID=IHFA_SHEDO
          Length = 99

 Score =  107 bits (269), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 55/89 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+++ + +     ++K  A   +++    + E+L+ G+ V L GFG F ++++  R G
Sbjct: 3  LTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRPG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG++I I+A +V +FR G+ LK  V
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARV 91


>UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=root
          RepID=Q1V2L3_PELUB
          Length = 91

 Score =  107 bits (269), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 58/90 (64%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK QLI +++   ++SKA A R  D I  ++ ++LK  D V + GFGT+ V +R AR G
Sbjct: 1  MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG++I I A++   F   KALK+  N
Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKEIFN 90


>UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum
          DSM 43021 RepID=D2BF20_STRRD
          Length = 106

 Score =  107 bits (268), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 51/85 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI+K AA A +S+     AL+AI+ ++  ++   D VA+ GFG+F +  + ARTG
Sbjct: 12 MNKRELIEKAAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPARTG 71

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
          RNPQTG+ + IA      F+     
Sbjct: 72 RNPQTGEPLEIAETWTAKFKPSPGF 96


>UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=Planctomycetaceae
          RepID=C1ZKD3_PLALI
          Length = 171

 Score =  107 bits (268), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +++  I+    +++      +     ++ E+L     + L  FG F VK+RAAR  
Sbjct: 1  MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG ++ +    V +F+ GK +++ V
Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKV 89


>UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopirellula marina DSM
           3645 RepID=A4A2Z0_9PLAN
          Length = 159

 Score =  107 bits (267), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 49/88 (55%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            K +++  I+    +++      +     ++ ++L E   + L  FG F VK+RAAR  R
Sbjct: 21  TKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARKAR 80

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+TG+++ + +  V +F+ GK +++ V
Sbjct: 81  NPRTGEKVYVPSKFVVTFKPGKEMEERV 108


>UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales
           RepID=IHFA_POLNA
          Length = 123

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 51/89 (57%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + K+ L + +     ++K  +   +DA    +++ L EG DV + GFG F ++ +A R G
Sbjct: 13  LTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRPG 72

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG+ I I + +V +F A   LK+ +
Sbjct: 73  RNPRTGEAIPIESRRVVTFHASHKLKEQI 101


>UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)
          RepID=C4K4H0_HAMD5
          Length = 119

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 61/89 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+++   + ++KA +  A+ A+ +S+ E+L + + V ++ FGTF V+ R  R  
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG++I   A +V  F AGK+LKD+V
Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSV 89


>UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2
           Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS
          Length = 103

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 55/90 (61%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + + ++ +++      S+      +D+ +  + ++L EG+ + LV FGTF V+++A RTG
Sbjct: 13  LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ ITI   +  SFR  K L++ VN
Sbjct: 73  RNPRTGEPITITKRQAVSFRPSKKLREQVN 102


>UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria
           RepID=B1Y0T8_LEPCP
          Length = 116

 Score =  106 bits (265), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           NKS+LI+ IA  ADISKAAA RAL+A+I  V  +LK+GD V+LVGFGTFAV +RAAR+GR
Sbjct: 28  NKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARSGR 87

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+TG  I I ++KVP FR GKALKD++N
Sbjct: 88  NPRTGAVIKIKSSKVPKFRPGKALKDSLN 116


>UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6
          Tax=Cystobacterineae RepID=A7H8A7_ANADF
          Length = 126

 Score =  106 bits (265), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS LI+ +     +++  A   ++ I  S+ ++L  G+++ + G G F VK      G
Sbjct: 1  MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I +   +   FR GK L+D VN
Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRVN 90


>UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2QWH5_9PLAN
          Length = 180

 Score =  106 bits (265), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 48/88 (54%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            K +++  I+    +++      +     ++ E+L E   + L  FG F VKERAAR  R
Sbjct: 58  TKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARKAR 117

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+TG+ + +A   V +F+ GK +++ V
Sbjct: 118 NPRTGQPVYVAEKFVVTFKPGKEMEEKV 145


>UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio
          acetiphilus DSM 12809 RepID=C1SGM2_9BACT
          Length = 91

 Score =  106 bits (265), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ +++ I     ++K    + +D +   V + +   ++V + GFG F VK+R  R G
Sbjct: 1  MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG E  I    V  FR  +  KD VN
Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEVN 90


>UniRef50_B2IE05 Histone family protein DNA-binding protein n=2
           Tax=Alphaproteobacteria RepID=B2IE05_BEII9
          Length = 171

 Score =  105 bits (264), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 47/89 (52%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            +  L   +     IS+  A R +  +++ +TE+L  G++V L  FG F ++ +  R GR
Sbjct: 73  TRKDLASSVYDCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRIGR 132

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+TG    I   +V  F+A K L D +N
Sbjct: 133 NPRTGVAAVIPPRRVLKFKASKVLLDRLN 161


>UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH
          Length = 90

 Score =  105 bits (264), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 52/89 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +LI ++A  A++ K      +DA+   + E L  G ++ L   G F ++E+AAR G
Sbjct: 1  MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + I A +   F   KALKDAV
Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALKDAV 89


>UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901
          RepID=C5BJS4_TERTT
          Length = 93

 Score =  105 bits (264), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 54/87 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ L+ ++    ++++  A   ++AI+  VT +L  G+ V L G G+F+V+ R A TG
Sbjct: 1  MRKTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKD 87
           NPQTG+ + IAA     F+AGK L+D
Sbjct: 61 INPQTGEALRIAAKNQIFFKAGKRLRD 87


>UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1
          Tax=Candidatus Cloacamonas acidaminovorans
          RepID=B0VJA9_9BACT
          Length = 95

 Score =  105 bits (264), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 54/89 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ L+  I+    I +      +DA++ ++ +S+ +G+ + + GFGTF +K R  R G
Sbjct: 1  MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+T +++ + A  VP+F+  +  K+AV
Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAV 89


>UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27
          RepID=C1A906_GEMAT
          Length = 110

 Score =  105 bits (264), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 6/95 (6%)

Query: 1  MNKSQLID----KIAAGAD--ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKE 54
          M K+ L++    +IA  A   ISK    R +DA + ++ E+L+E  ++ + GFGTF +++
Sbjct: 1  MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60

Query: 55 RAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R  R  RNP+TG  + ++A  VP F+  K L+  V
Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMV 95


>UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2
          Tax=Burkholderiaceae RepID=B2AK36_CUPTR
          Length = 92

 Score =  105 bits (264), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 63/91 (69%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LID IAAG   ++KA A +AL+  ++++ +++  GD + LVGFG+F+  ER  R 
Sbjct: 1  MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG++IT+ AAK   FR G+  KDA N
Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDAAN 91


>UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3
          Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC
          Length = 101

 Score =  105 bits (264), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ LI  ++  +D+SK  A  A++ I+  +T+ +  G  + + GFG F  K R  R G
Sbjct: 10 MKKTDLILNLSDSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQG 69

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+T +   +    VP F+ GK LK+ VN
Sbjct: 70 INPKTSERTQVGEKFVPFFKPGKLLKEIVN 99


>UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi
          (class) RepID=A9AXB4_HERA2
          Length = 95

 Score =  105 bits (263), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 54/86 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K + I ++A    ISK  A R +DA++  V+E L+ G+ V L GFGTF V+ER AR G
Sbjct: 1  MQKIEFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALK 86
           NP+T + +TI A K P F A  +LK
Sbjct: 61 VNPKTRERMTIEATKTPGFSASNSLK 86


>UniRef50_A0L712 Histone family protein DNA-binding protein n=5 Tax=Magnetococcus
          sp. MC-1 RepID=A0L712_MAGSM
          Length = 91

 Score =  105 bits (263), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS+LI  IAA   ++K  A   +D + + + ++L +G+ V L GFG F  + R  R  
Sbjct: 1  MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+++ + +     F+ G  ++  V+
Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRVD 90


>UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter
          sphaeroides ATCC 17025 RepID=A4WS11_RHOS5
          Length = 90

 Score =  105 bits (262), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 47/84 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +NKS L+  +A    +S+ A    LD  +  +  +++ GD + L GFG+F  + R ARTG
Sbjct: 4  LNKSDLVSTVAEKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPARTG 63

Query: 61 RNPQTGKEITIAAAKVPSFRAGKA 84
          RNP+TG+ + I A+    F   + 
Sbjct: 64 RNPRTGEAVAIPASTSIGFTPSRR 87


>UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP
          Length = 92

 Score =  105 bits (262), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/89 (49%), Positives = 61/89 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI+ I+  +++SK      L+  + ++ +SLK+G+ V LVGFGTF V  RAAR G
Sbjct: 1  MNKSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+ I I+A K P F +GK  K A+
Sbjct: 61 RNPQTGQTIHISATKTPVFISGKTFKTAI 89


>UniRef50_Q4FQ67 Integration host factor subunit alpha n=10
          Tax=Gammaproteobacteria RepID=IHFA_PSYA2
          Length = 99

 Score =  105 bits (262), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + KS +I+ + +  ++++      ++     ++ESL +G +V L GFG F +K++ +R G
Sbjct: 4  LTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRPG 63

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ + ++A +V +F+ G+  +  V+
Sbjct: 64 RNPKTGEPVAVSARRVVTFKTGQKFRQQVD 93


>UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii
          DSM 20697 RepID=B7AFK0_9BACE
          Length = 106

 Score =  105 bits (262), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 49/89 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  +AA + +    A + + A    + + +  G+ ++  G G F V+E  AR G
Sbjct: 1  MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP TG  + I   KV  F  GK+L++AV
Sbjct: 61 RNPFTGLGMRIPTRKVVKFSPGKSLREAV 89


>UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum
          terrenum ATCC BAA-798 RepID=D1CFB6_THET1
          Length = 84

 Score =  104 bits (261), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 54/81 (66%)

Query: 3  KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
          K++LI+++A    ++K+   +  + +++ +  SL++G+DV + GFGTF V ER+ R GRN
Sbjct: 4  KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63

Query: 63 PQTGKEITIAAAKVPSFRAGK 83
          P+TG+EI I   K  +FR  K
Sbjct: 64 PRTGEEIEIPGGKRVTFRMSK 84


>UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1
          Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS
          Length = 94

 Score =  104 bits (261), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          + K+ LI ++      ++KA A  +++A +    ++L  G D+ L GFG F VK++++R 
Sbjct: 3  LTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSRR 62

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNPQTG E+T+ A +V +F+    L+D +N
Sbjct: 63 GRNPQTGDELTLEARRVVTFKPSGILRDKIN 93


>UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacteridae
          RepID=DBH1_BIFLO
          Length = 93

 Score =  104 bits (261), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 54/88 (61%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NKS L+ KIA  ++++KA A  A++A      E++K G+ + L G  +    +RAARTGR
Sbjct: 4  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 63

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NP+TG++I I A+      AG  LK AV
Sbjct: 64 NPRTGEQIDIPASYGVRISAGSLLKKAV 91


>UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales
          RepID=IHFA_RHOP2
          Length = 123

 Score =  104 bits (261), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +  L + +     +S+  +   ++ ++  +T+ L++G+ V L  FG+F V+++  R GR
Sbjct: 9  TRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIGR 68

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG E+ I+  +V  F+    LK  +N
Sbjct: 69 NPKTGTEVPISPRRVMVFKPSAILKQRIN 97


>UniRef50_A8LLT5 Integration host factor subunit alpha n=28
          Tax=Alphaproteobacteria RepID=IHFA_DINSH
          Length = 101

 Score =  104 bits (261), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 56/89 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + +  L D +     +S+  + + +++I+  ++++L  G+ V +  FGTF+V++++AR G
Sbjct: 6  LTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARIG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+E+ I   +V +FR    +K+ V
Sbjct: 66 RNPKTGEEVPIHPRRVLTFRPSHLMKERV 94


>UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2
          Tax=Acidithiobacillus ferrooxidans RepID=B5ERD0_ACIF5
          Length = 91

 Score =  104 bits (261), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 45/90 (50%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK + +  +A    +SK  A +       ++   L     +   GF TF V E+ AR G
Sbjct: 1  MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+EI I A K   F+AGK   D VN
Sbjct: 61 RNPATGQEIDIPAKKSIKFKAGKEFADKVN 90


>UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6
          Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA
          Length = 97

 Score =  104 bits (260), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+Q++++I     +        ++ ++  +  SL+ GDDV + GFG F V++++ R G
Sbjct: 3  LTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRRG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG  I + A KV +F     L+D +N
Sbjct: 63 RNPATGDSIILDARKVVTFTCSGVLRDRIN 92


>UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter
          succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS
          Length = 124

 Score =  104 bits (260), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 47/89 (52%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K  LI +IA      +      ++  +  + E L EG+ + + GFGTFA K R AR  R
Sbjct: 5  TKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARPAR 64

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG+ + I    VP+F+    +KD +N
Sbjct: 65 NPRTGETVLIDERLVPTFKFSNDIKDKIN 93


>UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding protein n=8
           Tax=Rhizobiales RepID=C5B6T6_METEA
          Length = 163

 Score =  104 bits (260), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 1   MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
           M +S+L+ ++AA    + +      + A++A + ++L  GD V + GFG F+ K+  AR 
Sbjct: 59  MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118

Query: 60  GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           GRNP+TG+ + +A  K   FR GK ++  +
Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQRL 148


>UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14
          Tax=Alphaproteobacteria RepID=IHFA_SILPO
          Length = 100

 Score =  103 bits (259), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 56/89 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + +  L + +     +S+  + + +++++  ++++L  G+ V +  FGTF+V++++AR G
Sbjct: 6  LTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARVG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+E+ I   +V +FR    +K+ V
Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKERV 94


>UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp.
          D2 RepID=UPI0001BC7A84
          Length = 88

 Score =  103 bits (259), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 57/86 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI ++A    +S   AG ALD II ++TE++++G+++ LVGFG+F ++ER  R G
Sbjct: 1  MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALK 86
           NP TG  + I A +   FR G  ++
Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGSKMR 86


>UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctomycetaceae
          RepID=A6CAS4_9PLAN
          Length = 148

 Score =  103 bits (259), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +++  I+    +++      +     ++ ++L     + L  FG F VK+RAAR  
Sbjct: 1  MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG  + +    V +F+ GK ++  V
Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRV 89


>UniRef50_A0LI64 Histone family protein DNA-binding protein n=6
          Tax=Deltaproteobacteria RepID=A0LI64_SYNFM
          Length = 96

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS+LI+ +A    I+  AA  A++    S+  +L   D + + GFG+F VK      G
Sbjct: 1  MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I + + K+P F+ GK LK+ VN
Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERVN 90


>UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 Tax=Bacteria
          RepID=D2Q2Y1_9ACTO
          Length = 97

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 52/88 (59%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++L+  +AA A I +  A + LDA+   VTE++ +GD V+L G  +     RA RTG
Sbjct: 1  MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDA 88
          RNPQTG+ ++I A        G  LK A
Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAA 88


>UniRef50_A4YW83 Integration host factor subunit alpha n=41
          Tax=Alphaproteobacteria RepID=IHFA_BRASO
          Length = 119

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +  L + +     +S+  +   ++ ++  +T+ L+ G+ V L  FG+F V+++  R GR
Sbjct: 9  TRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIGR 68

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG E+ I+  +V  F+    LK  +N
Sbjct: 69 NPKTGTEVPISPRRVMVFKPSAILKQRIN 97


>UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI
          Length = 105

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          +N+ QL+ ++A+    +++  AG ALDA +  + ++L +G  V L GFG+F V+ R ART
Sbjct: 7  LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
            +P+TG+ + + AA    F   +AL++ +
Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERL 96


>UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5
          Length = 113

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 59/89 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+++   + ++KA +  A+ A+ +S+ +SL + + V ++ F TF V  R+ R  
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R+P+TG++I   A +VP F AGK LK +V
Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLKASV 89


>UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular
          organisms RepID=B1Y4B9_LEPCP
          Length = 131

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/90 (46%), Positives = 57/90 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+ +A    +SKA A R L  ++ +V  ++K+G  V L GFG+F    RAAR G
Sbjct: 1  MNKAELIEVLAKQHTLSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARNG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP TG +I IAA K+P F  G A K AV+
Sbjct: 61 VNPGTGDKIKIAAVKLPKFTPGTAFKAAVD 90


>UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio
          desulfuricans subsp. desulfuricans str. G20
          RepID=Q30VZ6_DESDG
          Length = 95

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 1  MNKSQL----IDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKER 55
          M K++L    ++ +A  G   +  A    + A +  +T  L  GD V L GFG F V  R
Sbjct: 1  MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60

Query: 56 AARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           AR GRNP+TG+ + I A+    F  GK LK+A+N
Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN 95


>UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12
          Tax=Proteobacteria RepID=A1WDL1_ACISJ
          Length = 91

 Score =  102 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+  LID IA   + SKAA  R LD++I  V   + +G  V L GFGTF     AARTG
Sbjct: 1  MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG  I I +   P F  G   KD V
Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLV 89


>UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3
          Tax=Anaeromyxobacter RepID=B4UEN5_ANASK
          Length = 90

 Score =  102 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKI-AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K+ LI+K+ A   D+SK      +D++   + + +++     + GFGTF VK RA R 
Sbjct: 1  MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GRNPQTG EI IA  K   F+    LK A+
Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90


>UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria (class)
          RepID=DBH1_STRCO
          Length = 93

 Score =  102 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEG-DDVALVGFGTFAVKERAART 59
          MN+S+L+  +A  A++++  A   L A    V + + +G + V + GF TF    RAART
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDA 88
           RNPQTG+ I I A       AG  LK+A
Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89


>UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio
          aespoeensis Aspo-2 RepID=D1UA57_9DELT
          Length = 92

 Score =  102 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 1  MNKSQLIDKIAAG--ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAAR 58
          MNKS+L+D +        SK    +A++  +  + E L + D V + GFG+F     A R
Sbjct: 1  MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60

Query: 59 TGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           GRNP  G+ + I A K   F+ GKALK+AV
Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAV 91


>UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae
          RepID=DBH_CAMJR
          Length = 98

 Score =  102 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/89 (44%), Positives = 59/89 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+  I  +A  A ++K  A  A DA+I+++T+ L +GD ++ +GFGTF+ +ERAAR  
Sbjct: 1  MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R P TGK I + A +V  F+ GK LK+AV
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89


>UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN
          Length = 92

 Score =  102 bits (255), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 58/89 (65%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K++L+  IA  A I+K  A  AL+A I +VT+SLK G DV LVGFGTF    RAA T R
Sbjct: 3  TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG+ +   A+K   F+ G+ LK ++N
Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSLN 91


>UniRef50_B1A4K2 Integration host factor subunit A-like protein n=2
          Tax=Gammaproteobacteria RepID=B1A4K2_9GAMM
          Length = 112

 Score =  102 bits (255), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +  L   +A     +   A   +D     + ++L +G++V L GFG F ++++ AR GR
Sbjct: 4  TRKDLAYYLADTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARPGR 63

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+T   + I A +V +F A ++LK   N
Sbjct: 64 NPKTKVPVEITARRVVTFHASQSLKGHCN 92


>UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii
           RepID=B6KEZ7_TOXGO
          Length = 235

 Score =  102 bits (255), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 50/88 (56%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            +  L+  +AA   + +A   + + A +  ++ SL++G  V+L  FG+  ++ R  R  R
Sbjct: 122 TRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERVAR 181

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+TG+++T+ A   P+F   K LKD V
Sbjct: 182 NPRTGEQLTVPATTFPTFSFSKVLKDKV 209


>UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3
          RepID=C2M9J7_9PORP
          Length = 90

 Score =  102 bits (255), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 53/85 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+  I  +A  A +++       +AI+ ++ E +K+G+ + LVGFG+F V +RAAR G
Sbjct: 1  MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           NP++GK I I A+K   F+   AL
Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85


>UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii
          DSM 11347 RepID=B5YH73_THEYD
          Length = 92

 Score =  102 bits (254), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI++++   D ++K      +D I   + E+L  G+ + + GF  F VK+R  R 
Sbjct: 1  MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG++I +   +  +F+  KALK+A+N
Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEALN 91


>UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group
          RepID=DBH_RICCN
          Length = 99

 Score =  102 bits (254), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 9/99 (9%)

Query: 1  MNKSQLIDKI---------AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFA 51
          MNK++ I  +         A+   ++KA A +AL+ ++ SV  ++K   ++ + GFG+F 
Sbjct: 1  MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60

Query: 52 VKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +  R AR GRNP+TG ++ I A   P+FRAG+ +K+A N
Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 99


>UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA
          Length = 88

 Score =  102 bits (254), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 53/87 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +L   +AA + +S++ AG+A+DA+  +V  + K    VA+ GFGTF+ K R AR G
Sbjct: 1  MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKD 87
          RNP T + I I      +F+   ALKD
Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALKD 87


>UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio
          magneticus RS-1 RepID=C4XHM4_DESMR
          Length = 92

 Score =  101 bits (253), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  +    ++    A   +++   S+ ++L  GD V + GFG+FAVKE    TG
Sbjct: 1  MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG ++ +   K+P F+ G+  K+ +N
Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKNYLN 90


>UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4
          Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT
          Length = 93

 Score =  101 bits (253), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K  LI+ +A       K    +A+D ++ S+ E+L+E   V + GFG+F+V+ER ART
Sbjct: 1  MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           +NP+TGK + I   K   F   K+LKD +
Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGL 90


>UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteobacteria
          RepID=Q1GXQ0_METFK
          Length = 90

 Score =  101 bits (253), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS+L+  I   A+ S A     LDA+ + V E L  G +V L G G  +V ERAAR G
Sbjct: 1  MKKSELVALI-KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARAG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I I A K P F A KALKDAVN
Sbjct: 60 RNPRTGEIIPIEAKKTPKFSAAKALKDAVN 89


>UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellular organisms
           RepID=A5EU64_BRASB
          Length = 130

 Score =  101 bits (253), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 57/89 (64%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
             +++ +KIAA  D++KA A   +D++  ++ ++   G + +L GFG F VK+  AR GR
Sbjct: 32  TANEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAREGR 91

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP TG  I IAA++  +F   KA+KD++N
Sbjct: 92  NPSTGATIAIAASRKLTFTPAKAIKDSLN 120


>UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8
          Length = 96

 Score =  101 bits (253), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 55/88 (62%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K+ L+D++A    + K      +DA++A V E+L  G  V L GFGTF V++R ARTG 
Sbjct: 7  TKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKARTGV 66

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           P T ++I I A + P+F+ GKALKD V
Sbjct: 67 KPGTKEKIKIPATQYPAFKPGKALKDKV 94


>UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria RepID=DBH_SYNY3
          Length = 100

 Score =  101 bits (252), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 1  MNKSQLIDKIAAGA------DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKE 54
          MNK +L+  +   A       I+K      + A I  + E + EG+ V LVGFG+F  +E
Sbjct: 1  MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60

Query: 55 RAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R  R GRNP+TG ++ I A KVP+F AGK  KD V
Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 95


>UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Tax=Bacteria
           RepID=Q6KHG3_MYCMO
          Length = 108

 Score =  101 bits (252), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 46/89 (51%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            K  LI  IA   + SK      ++A +  ++  L     + L  FG F + ERAAR+G 
Sbjct: 19  TKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARSGI 78

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+T + I I A K   F+  K+LKD VN
Sbjct: 79  NPKTSEIIQIKATKSVKFKVSKSLKDQVN 107


>UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae
          RepID=Q1DCD2_MYXXD
          Length = 89

 Score =  101 bits (252), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 57/89 (64%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++L++ +AA   ++K +A + LD +  ++ +++K+    +  GFGT++V+ R AR  
Sbjct: 1  MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQT + + + A+K   FR  K LK+++
Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89


>UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1
          Tax=Methylobacterium nodulans ORS 2060
          RepID=B8IKW1_METNO
          Length = 90

 Score =  101 bits (252), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 50/90 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK  L+  IAA A +S+A   + L A     T+SLK GDDV L G G      + AR G
Sbjct: 1  MNKPDLLKAIAAKAGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+TG+ + I A  VP  RA   L DA+N
Sbjct: 61 HNPRTGQPLQIPARLVPKLRASTTLHDALN 90


>UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3
          RepID=C8XUL7_9CAUD
          Length = 92

 Score =  101 bits (252), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++ +  IA+  +I+K  A + + + I  V  ++  G  V LVGFG F VK + AR G
Sbjct: 1  MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP  G+ I I A  V  F+ G+ LK+A N
Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLKNAAN 90


>UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria
           RepID=Q01W44_SOLUE
          Length = 108

 Score =  100 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 50/85 (58%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + K  +I+++     I+K  A  A++ +  S+ ++L++GD + L GFG F VK R    G
Sbjct: 20  LIKLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIG 79

Query: 61  RNPQTGKEITIAAAKVPSFRAGKAL 85
           RNP+TG E++I   K   F+ GK L
Sbjct: 80  RNPRTGAEVSIPPGKAVRFKPGKEL 104


>UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidales
          RepID=A6LHR2_PARD8
          Length = 95

 Score =  100 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+ +L+  +A    +++A A R + A   + TE+L+    + L+GFGT +  E+  R G
Sbjct: 1  MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+ G    I A K   F+ GK L   +N
Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLLLKQLN 90


>UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3
          Tax=Methylobacterium sp. 4-46 RepID=B0UCA4_METS4
          Length = 102

 Score =  100 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M ++QLI ++AA    +    A   + A++  +TE+L EGD + L GFG      R AR 
Sbjct: 1  MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ + + A +  +FRA + + + +N
Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERLN 91


>UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora
          acidiphila DSM 44928 RepID=C7Q397_CATAD
          Length = 167

 Score =  100 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 49/88 (55%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NK+ L  ++A     ++  A + +DA+   +   +  G+ V ++GFGTF   +RAAR GR
Sbjct: 3  NKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLGR 62

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NPQTG  I + A   P F AG+  +  V
Sbjct: 63 NPQTGAAIQVPAGTSPRFHAGQTFRTRV 90


>UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio
          yellowstonii DSM 11347 RepID=B5YLD8_THEYD
          Length = 94

 Score =  100 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ L++ I     + +    + ++ +  ++ E+L+E + V + GFG F V+ + +R G
Sbjct: 1  MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+T + + I   KV +FR  + LK ++
Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSI 89


>UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=Bacteroidales
          RepID=C7XFY9_9PORP
          Length = 98

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+ +L+  +     + K      ++A+   V + ++EG+ +++ GFG+F   +++ R  
Sbjct: 8  MNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERLA 67

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+E+ I       F+AG  L   +N
Sbjct: 68 RNPKTGEEVMITPRVSVKFKAGSDLLKELN 97


>UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Desulfovibrio
          vulgaris RepID=Q72CZ7_DESVH
          Length = 95

 Score =  100 bits (250), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 1  MNKSQLIDKIAAGAD-----ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKER 55
          MN+ +L+  +    +     I++    R LD         L EG DV L   G     ER
Sbjct: 1  MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60

Query: 56 AARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          AAR GRNP+TG+ I I A +V +F+AGK L++A+
Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94


>UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter
          propionicus DSM 2379 RepID=A1AQ83_PELPD
          Length = 126

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/87 (55%), Positives = 60/87 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+ KIA GA+++K  A + LD  IAS T +LK GD VA++GFG F+   R ARTG
Sbjct: 1  MNKTELVAKIAEGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKD 87
          RNPQTGK + IA      F  GKALKD
Sbjct: 61 RNPQTGKALQIAEKTNGKFTPGKALKD 87


>UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas
          auensis DSM 9187 RepID=C4LBB5_TOLAT
          Length = 91

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++LI+ +A   + +K  A  AL A+   +   L  G+ + + G GTF++  +AAR G
Sbjct: 1  MKKAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ + IAA K   F+A KAL DAVN
Sbjct: 61 RNPQTGETVEIAAKKTVKFKAAKALADAVN 90


>UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3
          Tax=Desulfuromonadales RepID=B3EBV2_GEOLS
          Length = 93

 Score = 99.7 bits (248), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K++LI  +A    I+   A   ++ +I  +  +L+ G+ + +  FG F VKE+ AR G
Sbjct: 3  LTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARRG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ ITI   KV SF+    L+ A+N
Sbjct: 63 RNPQTGEAITIEPRKVISFKPSVLLRQAIN 92


>UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabacteroides
          johnsonii DSM 18315 RepID=B7B856_9PORP
          Length = 101

 Score = 99.7 bits (248), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK  L++ I+   ++        ++ +   + +SL E + V +  FG+F +  +A+R  
Sbjct: 1  MNKHSLVEIISDRLNMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRPV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ +         F  GK L D +N
Sbjct: 61 RNPKTGEPMIFQPRNSVKFVPGKHLVDLLN 90


>UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1
          RepID=Q0BW86_GRABC
          Length = 101

 Score = 99.3 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 60/90 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN + LIDKIA   D +KA     + A I +++ +LK G++V + G G F V ERAAR G
Sbjct: 1  MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG  I IAA +   FRAGKALKDAVN
Sbjct: 61 RNPQTGATIEIAATRAARFRAGKALKDAVN 90


>UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans
          lithotrophicus ES-1 RepID=C6P6T8_9PROT
          Length = 100

 Score = 99.3 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          MN+S LI K+A    ++        +  I+  +  ++ +G+ V + GFG+F +  R  R 
Sbjct: 6  MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 65

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKD 87
          GRNP+TG +I +AA   P F+ GKALK+
Sbjct: 66 GRNPKTGAKIEVAAKYHPRFKPGKALKE 93


>UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=DBH_STRGN
          Length = 91

 Score = 99.3 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NK  LI K+AA  +++K  +  A+DA+ A+VTE L +G+ V L+GFG F V+ERAAR GR
Sbjct: 3  NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NPQTGKE  IAA+KVP+F+AGKALKDAV
Sbjct: 63 NPQTGKETKIAASKVPAFKAGKALKDAV 90


>UniRef50_B2S525 Integration host factor subunit alpha n=48
          Tax=Alphaproteobacteria RepID=IHFA_BRUA1
          Length = 107

 Score = 99.3 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 49/88 (55%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           ++ L + +     +S+  +   ++ I+  V +++  G+ V L  F TF V+++  R GR
Sbjct: 7  TRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGR 66

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NP+TG+E+ I   +V +F+A   LK  +
Sbjct: 67 NPKTGEEVPILPRRVMTFKASNVLKQRI 94


>UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio
          RepID=B8DML6_DESVM
          Length = 95

 Score = 98.9 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 1  MNKSQLIDKIAAGA---DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAA 57
          + K++ +  +        ++K +A +A DA  + + + +  G  V L G G F+V ERAA
Sbjct: 2  LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RTGRNPQTG+ I+I A K   F A K L D +N
Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTLVDGLN 94


>UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum
          sp. Group II RepID=A3EUM1_9BACT
          Length = 102

 Score = 98.9 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          + KS+LID + A    ++K A    +D + +++T+ + +G  V +VGFG F   +RAART
Sbjct: 9  LTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAART 68

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GRNP TG  I IAA   P F AGKA KD+V
Sbjct: 69 GRNPATGAVIKIAATTTPRFAAGKAFKDSV 98


>UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=Rhodomicrobium
           vannielii ATCC 17100 RepID=D2LEN1_RHOVA
          Length = 245

 Score = 98.5 bits (245), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 51/90 (56%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + ++ L + +     + +  A   ++ ++  +  +L+ G+ + L  FG+F +++++ R G
Sbjct: 20  LTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERVG 79

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ + I   +V  F+A   +KD +N
Sbjct: 80  RNPKTGEIVPITPRRVIVFKASNIMKDRIN 109


>UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
          3989 RepID=B7CAU3_9FIRM
          Length = 95

 Score = 98.2 bits (244), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 47/89 (52%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NK  L   ++   ++SK  A  A+D I   ++++L     V +  FG F + +R +R G 
Sbjct: 6  NKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRMGI 65

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP T + + I A K+P FR  + LK+  N
Sbjct: 66 NPVTKERMMIQATKLPKFRPSQTLKNKCN 94


>UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q2LW81_SYNAS
          Length = 91

 Score = 98.2 bits (244), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK  L++ +       K  A   +  ++ ++TE+LK+G+ V L+GFGTF V +R+ARTG
Sbjct: 1  MNKGDLVEAVTKVVGK-KKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSARTG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTGK I I A KVP F AGK LK+AV
Sbjct: 60 RNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88


>UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris
          ATCC 43183 RepID=B0NU55_BACSE
          Length = 101

 Score = 98.2 bits (244), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 49/85 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +L+D IA    ++K  + + L+ II  V E +K+   + L+GFGTF VK++ AR G
Sbjct: 1  MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           NP T   I I A +V  FR    L
Sbjct: 61 MNPSTFVPIEIPAKRVVYFRPSAYL 85


>UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobacteria
          RepID=A6Q378_NITSB
          Length = 91

 Score = 98.2 bits (244), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 56/89 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++ +  +A  A +SK    + +DA +  +T++LK GD+VA +GFGTF   +RAAR  
Sbjct: 1  MKKAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          + P T + + + A +V  F+ GK LK+AV
Sbjct: 61 KVPGTDRVVKVPATRVVKFKVGKKLKEAV 89


>UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11
          Tax=Desulfovibrionales RepID=B8DRW9_DESVM
          Length = 97

 Score = 97.8 bits (243), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K++++D I    D ++A     +++++  + +++K+   + + GFG F   ++ AR G
Sbjct: 6  LTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARKG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQT + IT+   KV  FR  +  +  +N
Sbjct: 66 RNPQTDETITLPPRKVVVFRLSRKFRAELN 95


>UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter
          succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS
          Length = 116

 Score = 97.8 bits (243), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K +++D+IA+    ++      ++ +I +++  + EG+++ L GFG F  K+R  R  R
Sbjct: 9  TKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRTR 68

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG+ + I A   P F   K L + +N
Sbjct: 69 NPKTGELVNIPAKVRPVFEPSKDLIEKIN 97


>UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia
          stuttgartiensis RepID=Q1Q201_9BACT
          Length = 103

 Score = 97.8 bits (243), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K  L +KIA   D +     + +   +  +   L +G+ + L  FG F +++RAAR  R
Sbjct: 5  TKRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARKAR 64

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NP+TG+   + +  V  F+ GK +++ V
Sbjct: 65 NPRTGEVAFVPSKNVVVFKVGKLMREKV 92


>UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S3Z3_OSTLU
          Length = 115

 Score = 97.8 bits (243), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 57/89 (64%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           +NK+ LID +A     +KA+ GR L+A + +++ +++ GD VAL  FGTFA K+R AR G
Sbjct: 23  LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP TG  + I AA  PSF A    KD V
Sbjct: 83  RNPLTGAALKIPAANYPSFSASSTFKDLV 111


>UniRef50_A5VG36 Histone family protein DNA-binding protein n=2
          Tax=Alphaproteobacteria RepID=A5VG36_SPHWW
          Length = 92

 Score = 97.4 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN S L D +A     +KA A +A+D + A++ ++  +G++V+L GFG F VK+  AR G
Sbjct: 2  MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+ I IAA+K  SF   KA+KD +N
Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRLN 91


>UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella
          RepID=A1S612_SHEAM
          Length = 91

 Score = 97.4 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 53/89 (59%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ L   IA    +S+  A R L+ I+AS+ ++L+EG+ + L  FGTF ++    R  
Sbjct: 1  MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + +A    PSF+   ALK  +
Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLI 89


>UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR
          Length = 101

 Score = 97.4 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 9/99 (9%)

Query: 1  MNKSQLIDKIAAGA---------DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFA 51
          MNK++ I  +               +KA A +AL+ ++ S+  + K    V + GFG+F 
Sbjct: 1  MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60

Query: 52 VKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          ++ R +R GRNP+TG ++TI A K P F+AG  LK+A N
Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACN 99


>UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi
          RepID=Q5LM20_SILPO
          Length = 91

 Score = 97.0 bits (241), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 47/90 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+QL+  +A      K  A  ALDA+ A +T  +  G  V L G G    +ER  R  
Sbjct: 1  MTKTQLVAALAEDMGSDKKTASAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERQV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+  T AA KV      KALKD+VN
Sbjct: 61 RNPATGETFTKAADKVVKMTIAKALKDSVN 90


>UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing
          symbionts RepID=A5CWF3_VESOH
          Length = 109

 Score = 97.0 bits (241), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 46/85 (54%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K  + + +    DI+   A          + ++L  G+ V L  FG F ++E+++R GR
Sbjct: 4  TKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRVGR 63

Query: 62 NPQTGKEITIAAAKVPSFRAGKALK 86
          NP+TG+ + I+A +V  F++G  LK
Sbjct: 64 NPKTGEMVEISARRVVVFKSGPKLK 88


>UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1 Tax=Bacteroides
          fragilis 3_1_12 RepID=UPI0001B4AA8F
          Length = 97

 Score = 96.6 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +LI+ IA  A+I+K     A++       E++  GD + + GFGT + K R A+  
Sbjct: 1  MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN   G  + +    VP F+  KA K  VN
Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQVN 90


>UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabacteroides
          RepID=A7AIP7_9PORP
          Length = 91

 Score = 96.6 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+SQLI+ +A    ++K    R +D +   + + +KEG  + L GFG+F  + +++R  
Sbjct: 1  MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN + G  + ++   +  F+    L + +N
Sbjct: 61 RNLKNGTAVQLSPRTIIHFKCAPHLLEQMN 90


>UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter
          alkaliphilus AHT 1 RepID=C0GE87_9FIRM
          Length = 84

 Score = 96.6 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 46/81 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ +   IA   +I    A   ++ +I ++TESL  G+ V L GFGTF ++    R  
Sbjct: 1  MIKTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAA 60

Query: 61 RNPQTGKEITIAAAKVPSFRA 81
          RNP+TG+ + + A   P+FRA
Sbjct: 61 RNPKTGETVQVPATHYPTFRA 81


>UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 Tax=Magnetococcus
          sp. MC-1 RepID=A0L9H9_MAGSM
          Length = 109

 Score = 96.6 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M+   LI +IA   ++S A     +  ++  V + L   + V L  FG FAVK+     G
Sbjct: 1  MDAKGLIQQIARKRNLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWLG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          R+PQTG+ + +    VP F++   L+  +N
Sbjct: 61 RHPQTGEMMKLPGKNVPFFKSDSELRKRLN 90


>UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2
          RepID=C0QI67_DESAH
          Length = 108

 Score = 96.2 bits (239), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 55/90 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+++ ++     DIS+  +   ++  +  + E+L++G+DV + GFG F V E+ AR G
Sbjct: 3  LTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARKG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP T +E+ + A +V +F+    L++ +N
Sbjct: 63 RNPATSEEMILPARRVITFKCSGKLRNLIN 92


>UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=Desulfovibrio
          RepID=C4XGD8_DESMR
          Length = 100

 Score = 96.2 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ ++D I    + ++A     +D ++  + +S+K  + + + GFG F   ++ AR G
Sbjct: 6  LTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKARKG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQT   I +   KV  FR  +  +  +N
Sbjct: 66 RNPQTNASIMLPPRKVVVFRLSRKFRAELN 95


>UniRef50_C8X523 Histone family protein DNA-binding protein n=2
          Tax=Desulfovibrionales RepID=C8X523_DESRD
          Length = 98

 Score = 96.2 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ ++D I      S+A     ++ ++  + +S+K+   + + GFG F   ++  R G
Sbjct: 6  LTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRKG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQT + IT+    V  FR  +  +  +N
Sbjct: 66 RNPQTEEAITLPGRTVVVFRLSRRFRAELN 95


>UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae
          RepID=C6X423_FLAB3
          Length = 96

 Score = 96.2 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/90 (53%), Positives = 61/90 (67%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLK-EGDDVALVGFGTFAVKERAART 59
          MNKS+LID +A  A I+K AA  AL++ I++VT +L  +   V+LVGFGTF+V ERAAR 
Sbjct: 1  MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          G NP T K I IAA  V  F+AG  L  +V
Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSV 90


>UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC
          29098 RepID=B6WST8_9DELT
          Length = 97

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 1  MNKSQLIDKIAAGA------DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKE 54
          M K  L+  +   +       + +A     L A+     + L  G +V L G G    K+
Sbjct: 1  MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60

Query: 55 RAARTGRNPQTGKEITIAAAKVPSFRAGKAL 85
          RAAR GRNP+TG+ +TI A +V  F   + L
Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKL 91


>UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides
          RepID=C6IB23_9BACE
          Length = 96

 Score = 95.8 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 49/85 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K  LI  IA  +++ K      ++ ++ ++ E+L +G+ V LVGFGTF VKER AR G
Sbjct: 1  MKKIDLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           N  TG+ +TI   K   F+ G  +
Sbjct: 61 YNLSTGEIMTIPGKKTVRFKPGAKM 85


>UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytoplasma
          RepID=Q2NIZ7_AYWBP
          Length = 106

 Score = 95.5 bits (237), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGD---DVALVGFGTFAVKERAA 57
          MNK + + K+A    I+K  A + L+  I  + ++ +E +    V L GFGTF  K R A
Sbjct: 1  MNKLKFLRKLAEKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNA 60

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKALK 86
          R G+NP+TGK I I A KVP+F+  K LK
Sbjct: 61 REGKNPRTGKTIYIPAKKVPTFKFSKLLK 89


>UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum
          ferrodiazotrophum RepID=C6HU01_9BACT
          Length = 99

 Score = 95.5 bits (237), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS L  ++A     I+   A   +D  + ++ E L  GD V +  FG   V E+A R 
Sbjct: 1  MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDA 88
          GRNP+TG  + I A K   F+ G+ALK+A
Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNA 89


>UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=Kytococcus
          sedentarius DSM 20547 RepID=C7NGK9_KYTSD
          Length = 106

 Score = 95.1 bits (236), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ L   +       +  A + +D ++ ++   +  G  V L GFGTF   ERA RTG
Sbjct: 1  MNKADLARILEPIVG-GQGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRTG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + I     P FR     +  V
Sbjct: 60 RNPRTGEVVRIPGTAGPRFRPSPMFRGFV 88


>UniRef50_B7JAF9 Integration host factor, alpha subunit, putative n=2
          Tax=Acidithiobacillus ferrooxidans RepID=B7JAF9_ACIF2
          Length = 107

 Score = 94.7 bits (235), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K  + + +      +   A + +DA    +  ++    ++ L GFG F V+ +++R GR
Sbjct: 4  TKKDVANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRPGR 63

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG+   I A +V +F A   L+   N
Sbjct: 64 NPKTGQPYEIKARRVVTFSASALLRAKSN 92


>UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Candidatus
          Liberibacter asiaticus str. psy62 RepID=C6XF17_LIBAP
          Length = 114

 Score = 94.7 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 46/88 (52%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R GR
Sbjct: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          N QT +E+ I   +V  F+A   LK  +
Sbjct: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93


>UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax=Deinococcus
           RepID=Q1J3J9_DEIGD
          Length = 149

 Score = 94.7 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 51/87 (58%)

Query: 3   KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
           K+QL+D +A    ++K  +  A+ A++  V +++K+G  V L G GT +VK  AARTG  
Sbjct: 53  KTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGVR 112

Query: 63  PQTGKEITIAAAKVPSFRAGKALKDAV 89
           P T + I I A K  +F+    LK ++
Sbjct: 113 PGTSERIQIPAGKKVAFKVASTLKSSL 139


>UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 Tax=Beijerinckiaceae
           RepID=B2ICU5_BEII9
          Length = 122

 Score = 94.7 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 2   NKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
            ++ L+D I      +S+A      +  +  ++E+L  G+ V L  FG F+V+ +  R G
Sbjct: 21  TRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG 80

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG E+ I   +V +F+A   L  +VN
Sbjct: 81  RNPRTGVEVPIKPRRVLTFKASPVLAASVN 110


>UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=Proteobacteria
          RepID=Q602W2_METCA
          Length = 95

 Score = 94.7 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 1  MNKSQLIDKIAAGAD--ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAAR 58
          MN+SQLI+ I   A+  ++K    R L A+     E+L  GD+V + G     VKERAAR
Sbjct: 1  MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60

Query: 59 TGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          TGRNPQTG+ + I A +V      KALK+ V
Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERV 91


>UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium RepID=C3WGU4_9FUSO
          Length = 92

 Score = 94.7 bits (235), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K +    +       ++  A + +D I  ++ ++L +G+D++++ +G   V ERA R 
Sbjct: 1  MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRL 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+E+ I   K   FR GKA  + +N
Sbjct: 61 GRNPKTGEEVNIGERKSVKFRPGKAFLEKLN 91


>UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaproteobacteria
          RepID=B9K3N0_AGRVS
          Length = 92

 Score = 94.3 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 54/86 (62%)

Query: 5  QLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQ 64
          ++ DKIAA  ++ KA A   ++++   +TE+   G + ++  FG F +K+   R GRNP 
Sbjct: 6  EIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGRNPA 65

Query: 65 TGKEITIAAAKVPSFRAGKALKDAVN 90
          TG  I IAA+K  +F  GKA+KDA+N
Sbjct: 66 TGATIKIAASKKLTFTPGKAVKDALN 91


>UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteria
          RepID=B0SI26_LEPBA
          Length = 101

 Score = 94.3 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS+++ ++A    ++K      LD+ +    +  K+     + G G    + R  R G
Sbjct: 8  MKKSEMLSELAETTGMTKKNVAAFLDSFVELAYKETKKNGAFVIPGLGKLVKRNRPKRKG 67

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP TG+ I I A  V  F   K  KDAV
Sbjct: 68 RNPATGEAIVIPAKTVVKFTLSKTCKDAV 96


>UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum
          thermopropionicum SI RepID=A5CZA3_PELTS
          Length = 92

 Score = 93.9 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKI-AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K   ++ + AAG   + A A RALDA+  ++T +    + V L GFG F +++R+ R 
Sbjct: 1  MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GR+ +TG+ I+I A KV  F+ GKAL+ AV
Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAV 90


>UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus
          radiotolerans SRS30216 RepID=A6W7Q9_KINRD
          Length = 179

 Score = 93.9 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++++D + A     +  A  A++A++  +  ++ +GD VA+ GFGTF  + R ARTG
Sbjct: 1  MNKAEMVDALEARLG-GRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + I    VP FR G A K+ V
Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIV 88


>UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 Tax=cellular
          organisms RepID=Q4ZXI2_PSEU2
          Length = 93

 Score = 93.9 bits (233), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K QLI  IA   D  K  A  AL+ +   V + L++G ++ L   G   V ER ARTG
Sbjct: 3  LTKDQLIADIAEAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPARTG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG  I IAA KV  F   K L D++N
Sbjct: 63 RNPSTGAAIEIAAKKVIKFVPAKVLTDSIN 92


>UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepID=Q2SRR9_MYCCT
          Length = 90

 Score = 93.5 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 58/89 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +LI++I    +ISK  A + ++ I  ++++ L EG +V++ GFG F + ER++R G
Sbjct: 1  MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP TG++I I A++   F+  K LK+++
Sbjct: 61 VNPSTGEKIIIPASRSARFKPAKQLKESL 89


>UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. SK209-2-6
          RepID=A4EV14_9RHOB
          Length = 94

 Score = 93.5 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +N S LI  IA     S+ A    L A+   + ++ + G D  + G G F   ERAAR G
Sbjct: 4  LNYSGLIRAIAEETSQSQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERAARKG 63

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG EI IAA+   SF+  KA KD +N
Sbjct: 64 RNPSTGVEIEIAASSSLSFKPAKAAKDRLN 93


>UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1
          Tax=Desulfurivibrio alkaliphilus AHT2
          RepID=C8QYJ3_9DELT
          Length = 97

 Score = 93.5 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + +  L   I      S+ +A   +D +   +  +L   + + LV FGTF V+ ++ R G
Sbjct: 6  LTRKDLAKAINEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG  + I+   + SFR  K++++ +N
Sbjct: 66 RNPRTGDPMEISKRSMISFRPSKSVRERIN 95


>UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 Tax=Persephonella
          marina EX-H1 RepID=C0QR54_PERMH
          Length = 96

 Score = 93.5 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 5/94 (5%)

Query: 1  MNKSQLIDKIAAGAD--ISKAAAGRALDAIIASVTESLKEGD---DVALVGFGTFAVKER 55
          M K+++++ I    +  +SK      ++AI   + + L  G+    V + GFGTF VK+R
Sbjct: 1  MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60

Query: 56 AARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          A + GRNP+T +E  I      SF+AGK LK+++
Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKESL 94


>UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=Magnetospirillum
          RepID=Q2WAF5_MAGSA
          Length = 89

 Score = 93.1 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 54/89 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M+KS +   I   A  + A A  A++A++A++ E +K     +L+GFG+F+  ER AR G
Sbjct: 1  MSKSAMSKAIRQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TGK I IAA+    F    ALK ++
Sbjct: 61 RNPRTGKTIDIAASTSIKFSTSAALKKSL 89


>UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabacteroides
          johnsonii DSM 18315 RepID=B7B7U9_9PORP
          Length = 99

 Score = 93.1 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 41/90 (45%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+  +    AA   +        + A + +V++ L  G  V +  FG+F   E+ +R  
Sbjct: 1  MNRKDIEKITAARLGVPVTTVEPFVQAFLETVSDCLMYGHHVTIQRFGSFRRWEQTSRPV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+   +       F  GK L + +N
Sbjct: 61 RNPRTGEPCMLEPRTSVKFNPGKTLFEKMN 90


>UniRef50_A7HII4 Histone family protein DNA-binding protein n=4 Tax=Anaeromyxobacter
           RepID=A7HII4_ANADF
          Length = 123

 Score = 93.1 bits (231), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 45/90 (50%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           M ++Q    +A GA +SKA   +   A+   VT+ LK    + L G G   + +R AR G
Sbjct: 29  MTQAQFFQAVAEGAQLSKAQVRQVFQAVEDVVTKKLKGEGKIPLGGLGAVKLVDRKARIG 88

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP TG++I I A         K LKD  N
Sbjct: 89  RNPATGEQIKIPARTAIKITPAKGLKDIFN 118


>UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=Candidatus
          Phytoplasma mali AT RepID=B3R0E2_PHYMT
          Length = 96

 Score = 92.8 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 53/87 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK + I +++   + ++    + ++A+I  +  +L + + + + GFGTF VK R+ R G
Sbjct: 1  MNKIEFIKQLSDKLETTEKEGKKIINAVIDVIRINLLQNEKILITGFGTFCVKTRSEREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKD 87
          ++P+T + I I A K+PSF+  K  KD
Sbjct: 61 KHPKTREIIKIPAKKIPSFKMSKRFKD 87


>UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 Tax=Bacteria
          RepID=A0LVA1_ACIC1
          Length = 163

 Score = 92.8 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI  +AA     K  A  A++A+I ++T ++  G+ VA+ GFG F   ERAAR  
Sbjct: 1  MNKAELITAVAARIG-DKKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARMA 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP TG+ + +    VP FRAG  LK  V
Sbjct: 60 RNPATGERVRVKKTSVPKFRAGTRLKGVV 88


>UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergensis DSM 17361
          RepID=D1PUX5_9BACT
          Length = 94

 Score = 92.8 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDD-VALVGFGTFAVKERAART 59
          MNK+QLI  +A+  +ISKA A   ++ ++  + ++L EGD  VA+  FG F +K+ A R 
Sbjct: 1  MNKTQLIAALASKTEISKANAATYVNTLLGIIADNLCEGDREVAIPDFGRFFIKQLAERQ 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKAL 85
          G NP TG+ ITIAA +  +F A   L
Sbjct: 61 GVNPATGERITIAAREKVAFNASDNL 86


>UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales
           RepID=A4X4D0_SALTO
          Length = 237

 Score = 92.8 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           NK++LI+ +A      +  A  ALDA++  V  ++ +G+ V++ GFG F  + R ART R
Sbjct: 19  NKAELIETLAVRLG-DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTAR 77

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+TG+ + +    VP+FR G   K+ V
Sbjct: 78  NPRTGEAVKVKKTSVPTFRPGTGFKEMV 105


>UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus Pelagibacter
          RepID=Q4FLU7_PELUB
          Length = 102

 Score = 92.8 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K  LI+ I      SK  +   +D  + ++ ++LK    + L  FGTF+++ + +R G
Sbjct: 8  LTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 67

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T ++ TI+   V  F+A K  KD VN
Sbjct: 68 RNPKTKEQTTISNRDVVLFKASKEFKDLVN 97


>UniRef50_A3EV93 Putative integration host factor, alpha subunit HimA like n=2
          Tax=Leptospirillum sp. Group II RepID=A3EV93_9BACT
          Length = 98

 Score = 92.8 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 1  MNKSQLIDKIAAGADISKAAAG---RALDAIIASVTESLKEGDDVALVGFGTFAVKERAA 57
          M +  ++ +I    + S+  A    +  D I+  ++ +L+ G+DV + GFGTF V++   
Sbjct: 1  MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKALKDA 88
          R GRNP+TG+ + I A     F   ++L  A
Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSLLKA 91


>UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=1
          Tax=Persephonella marina EX-H1 RepID=C0QP77_PERMH
          Length = 95

 Score = 92.8 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS L++ +      + K      L+    ++T++L +GD V + G G+F VK + +R 
Sbjct: 1  MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG  + +   +V  F+ GK LK  +
Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKKL 90


>UniRef50_Q8UG61 Integration host factor subunit alpha n=29
          Tax=Alphaproteobacteria RepID=IHFA_AGRT5
          Length = 112

 Score = 92.8 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 49/88 (55%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           ++ L + +     +S+  +   ++ II  +  ++  G+ V L  F TF ++E+  R GR
Sbjct: 7  TRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIGR 66

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NP+TG+E+ I+  +V +F+A   LK  +
Sbjct: 67 NPKTGEEVPISPRRVMTFKASNVLKQRI 94


>UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14
          Tax=Fusobacteriaceae RepID=C7N8X2_LEPBD
          Length = 93

 Score = 92.4 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 45/73 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M+K + +D  A     +K  A   ++  + +V ESL +GD V  VG+GTF VKERAARTG
Sbjct: 1  MSKKEFVDAYAKATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAARTG 60

Query: 61 RNPQTGKEITIAA 73
           NPQT +EI I  
Sbjct: 61 INPQTKEEIQIPE 73


>UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus lactis
          RepID=Q02VJ4_LACLS
          Length = 103

 Score = 92.4 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 7/95 (7%)

Query: 2  NKSQLIDKIAAGAD-------ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKE 54
          NK +L   I+  +        ++   + + +DAI AS+TE L +   + ++ FGTF  K 
Sbjct: 3  NKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKKT 62

Query: 55 RAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RA+R G NPQ G+ I I    VP+F+AGK LK+AV
Sbjct: 63 RASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97


>UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=1 Tax=Fusobacterium
          periodonticum ATCC 33693 RepID=UPI0001BCAEAF
          Length = 90

 Score = 92.4 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 51/85 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +L++ ++    I K    + LD +   +TE LK+G+D  L   GTF VK+RA + G
Sbjct: 1  MLKKELLNVLSEKLGIKKIETEKFLDTLEEVITEELKKGEDFNLGKLGTFKVKDRAEKNG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           NP+TG++I I A K  +F+A K L
Sbjct: 61 VNPKTGEKIVIPARKAVTFKASKNL 85


>UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabacteroides
          johnsonii DSM 18315 RepID=B7BF96_9PORP
          Length = 99

 Score = 92.4 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++++ +IA      K      ++A + SV  ++ EG++V L GFG+F +K RA +  
Sbjct: 1  MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN      I I A  +P+F+  KA  D VN
Sbjct: 61 RNISQNTTIVIPAHSIPAFKPSKAFADMVN 90


>UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 Tax=Rhodomicrobium
           vannielii ATCC 17100 RepID=D2LFF2_RHOVA
          Length = 126

 Score = 92.4 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 53/88 (60%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
              QL  ++A    +S+  A   L   ++S+ + LK+G  + + G GT  V++RAARTGR
Sbjct: 39  TLRQLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTGR 98

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP TG+ I I A+K  +FRA K L +++
Sbjct: 99  NPATGEAIEIKASKKVAFRAAKDLSESI 126


>UniRef50_B3DWZ9 Bacterial nucleoid DNA-binding protein n=1 Tax=Methylacidiphilum
          infernorum V4 RepID=B3DWZ9_METI4
          Length = 109

 Score = 92.4 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M +  L+ K++    + +    +  + I+    E  K+ + + L  FG F V  R AR G
Sbjct: 1  MTRRDLVVKVSTKTGLPQQEVAKIFEEILDVFMEVFKKKETIELRNFGVFEVTLRKARIG 60

Query: 61 RNPQTGKE-ITIAAAKVPSFRAGKALKDAVN 90
          RNP+  ++ I I    V  F+ GK +K  +N
Sbjct: 61 RNPRNPEKDILIPPRAVIRFKPGKEVKGILN 91


>UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptunium ATCC 15444
          RepID=Q0BZC9_HYPNA
          Length = 91

 Score = 92.4 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 46/89 (51%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +    L  +++   ++ K  A   +   I  +   LK+G  + + G G   V++  AR G
Sbjct: 2  LTLKHLAAELSEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKG 61

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP TG+EI I A+K  +FR  K LK+ V
Sbjct: 62 RNPATGEEIKIKASKKVAFRPSKDLKERV 90


>UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylobacterium
           extorquens AM1 RepID=C5B569_METEA
          Length = 140

 Score = 92.0 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           M  ++L   +A    +      R + A ++ V E L  G+DV L GFG F V++R AR  
Sbjct: 45  MTLAELESVLAGRLGLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARRR 104

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           ++P+ G+E+ + A +   FR  + L++A+N
Sbjct: 105 KDPRDGRELEVPARRGAVFRPSRLLREALN 134


>UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteria
          RepID=Q3SRD9_NITWN
          Length = 99

 Score = 92.0 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 55/84 (65%)

Query: 6  LIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQT 65
          L   +A   ++SK AA   L  ++  +T+ LK+GD + +VG G   V++RAAR GRNP T
Sbjct: 16 LAAALAEDHELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARKGRNPAT 75

Query: 66 GKEITIAAAKVPSFRAGKALKDAV 89
          G+EI I A+K  +FRA K LK+A+
Sbjct: 76 GEEIQIKASKKVAFRAAKELKEAI 99


>UniRef50_B7B9I2 Putative uncharacterized protein n=3 Tax=Parabacteroides
           RepID=B7B9I2_9PORP
          Length = 136

 Score = 92.0 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 46/89 (51%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            K  LI ++A   + +  AA + L++ I  +TE L EG+ V++  FG      +  R GR
Sbjct: 45  TKRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPGR 104

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           N +TG+E  I A     F+A + L   +N
Sbjct: 105 NLRTGEECKIRARTSVKFKASEILIQKLN 133


>UniRef50_A3VSB6 DNA-binding protein HU n=1 Tax=Parvularcula bermudensis HTCC2503
          RepID=A3VSB6_9PROT
          Length = 95

 Score = 91.6 bits (227), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLK---EGDDVALVGFGTFAVKERAA 57
          M+K++ I  +AA  D+S A A R ++ +   +   LK   +     +  FGTF + +R A
Sbjct: 1  MSKAEFISNVAAAGDMSNAEAKRMVELVFGEIEAGLKRAKKDGKYTIGTFGTFTITKRPA 60

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKALKDA 88
          R GRNP+TG+EI I A+K   FR    LK A
Sbjct: 61 RKGRNPRTGEEIKIKASKSLRFRPSSNLKAA 91


>UniRef50_C6HZV1 Putative integration host factor, alpha subunit HimA like protein
          n=1 Tax=Leptospirillum ferrodiazotrophum
          RepID=C6HZV1_9BACT
          Length = 104

 Score = 91.6 bits (227), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 1  MNKSQLIDKIAAG---ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAA 57
          MN++ +++          + + A   ALD +I  +T S+  G+ V L GFGTF V++R  
Sbjct: 1  MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKAL 85
          R GRNP+TG+ + I + KV  FR  +  
Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRPTRHF 88


>UniRef50_A3ER44 Putative integration host factor, beta-subunit n=2
          Tax=Leptospirillum sp. Group II RepID=A3ER44_9BACT
          Length = 98

 Score = 91.6 bits (227), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M +  LI +IA   A IS + +   +  +  S+   + EG+ + +  FG F +  R  R 
Sbjct: 1  MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG+++++   K   FR GK LK  +
Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRM 90


>UniRef50_Q98RC2 DNA-BINDING PROTEIN HU n=2 Tax=Mycoplasma RepID=Q98RC2_MYCPU
          Length = 126

 Score = 91.6 bits (227), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           M K + + KI+  + IS+      +++++  + ESL   + V +   GTF  K +AAR G
Sbjct: 36  MTKKEFMQKISEHSFISQRDVEAIINSMVFVIKESLISEEKVTIPMLGTFETKIKAAREG 95

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
               TG++I I   +V  F+  K +K+ VN
Sbjct: 96  IKFTTGEKILIPEKRVVKFKPTKYIKEVVN 125


>UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID=DBH_DEIRA
          Length = 122

 Score = 91.6 bits (227), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 3   KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
           K+QL++ +A    ++K  +  A+ +++  V  +L+ G  V L G GT +VKE AARTG  
Sbjct: 36  KTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGVR 95

Query: 63  PQTGKEITIAAAKVPSFRAGKALK 86
           P T ++I I A K  +F+    LK
Sbjct: 96  PGTSEKIQIPAGKKVAFKVASTLK 119


>UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 Tax=Akkermansia
          muciniphila ATCC BAA-835 RepID=B2UMR7_AKKM8
          Length = 101

 Score = 91.6 bits (227), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K  L++KI+A  + ++      +   +  ++ +L EGD V +  FGTF VKE   + G
Sbjct: 5  LTKRDLVNKISAETNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVKPKVG 64

Query: 61 RNPQT-GKEITIAAAKVPSFRAGKALKDAV 89
          RNP+   +++ I A  V  F+ GK LKD V
Sbjct: 65 RNPKNPDQDVPIPARSVVKFKVGKELKDQV 94


>UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales RepID=A6L5T8_BACV8
          Length = 94

 Score = 91.2 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++L  KI+A            +++++  V ESL++G++V L GFG+F VK+RA +T 
Sbjct: 1  MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN      I I A  +P+F+  K L   VN
Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKELVKLVN 90


>UniRef50_C6ZBE9 DNA binding protein HU n=7 Tax=Bacteroides RepID=C6ZBE9_9BACE
          Length = 90

 Score = 91.2 bits (226), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ LI  +A  A+         +D+    ++++L+E D V++  FGTF    + AR  
Sbjct: 1  MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
          RNP TG+ + +   +V  F+  K +
Sbjct: 60 RNPATGEPVEVPEKEVVKFKPSKNI 84


>UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=Mycoplasma
          synoviae 53 RepID=Q4A5S4_MYCS5
          Length = 91

 Score = 91.2 bits (226), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 44/90 (48%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++ I  ++    ++     R  D  +  + E L  G+ V L   G F V  RA RT 
Sbjct: 1  MTKTEFIKAVSDKTGLTVGELNRVFDGFVYVLQEQLVAGEKVQLSNLGIFDVATRAERTI 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +N  TGKE  +AA KV  ++  K L D VN
Sbjct: 61 KNHFTGKEQVVAAKKVVKYKPSKYLTDVVN 90


>UniRef50_B8II37 Histone family protein DNA-binding protein n=1
          Tax=Methylobacterium nodulans ORS 2060
          RepID=B8II37_METNO
          Length = 113

 Score = 91.2 bits (226), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M ++QLI +IA     +    A   +  I+  + E+L + + +AL GFGTF    R AR 
Sbjct: 1  MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          G NP+TG+ + + A +   FRA   +   +N
Sbjct: 60 GHNPRTGEAVAVPARRDVRFRASTEMLHRLN 90


>UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus lactis
          RepID=Q02ZW9_LACLS
          Length = 120

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 52/84 (61%)

Query: 3  KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
          K +LID +A   ++SK  A +A++A + ++T  + EG  V +  FGTF V++ AAR   +
Sbjct: 4  KQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISHD 63

Query: 63 PQTGKEITIAAAKVPSFRAGKALK 86
            + ++I +    +P FRAGKALK
Sbjct: 64 VHSREKILVGEQNIPVFRAGKALK 87


>UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 Tax=cellular
           organisms RepID=B9LTH2_HALLT
          Length = 206

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 7/82 (8%)

Query: 15  DISKAAAGRALDAIIASVTESLKEGDDVAL-------VGFGTFAVKERAARTGRNPQTGK 67
            +S+  A  AL+A I + T++LK+GD ++L        GFGTF++ +R+ARTGRNPQTGK
Sbjct: 124 GLSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNPQTGK 183

Query: 68  EITIAAAKVPSFRAGKALKDAV 89
           EI IAA  V  F+AG  L  AV
Sbjct: 184 EIQIAAKNVVKFKAGAELSKAV 205



 Score = 84.7 bits (209), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 49/64 (76%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+ +A+ + +SK+ A RALD    + T++L++GD   LVGFG+F++ +R+ARTG
Sbjct: 1  MNKAELIESMASESGLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSARTG 60

Query: 61 RNPQ 64
          RNP 
Sbjct: 61 RNPS 64


>UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=1
          Tax=Agrobacterium radiobacter K84 RepID=B9JPN0_AGRRK
          Length = 117

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + ++ +   I     +S+  +   +D I+  +  +L  G++V L  F  F V+E++ R G
Sbjct: 6  LTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRRPG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG++  IAA +V SF A  A+K  +
Sbjct: 66 RNPKTGEDYQIAARRVISFTASDAVKTQI 94


>UniRef50_D0RNW1 Integration host factor subunit alpha (IHF-alpha) n=1 Tax=alpha
          proteobacterium HIMB114 RepID=D0RNW1_9RICK
          Length = 95

 Score = 90.8 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 50/89 (56%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +  L D       ISK    + +D +  S+ ++ +EG+ V +  FG+F VK++ AR GR
Sbjct: 6  TRQDLYDLTYKELGISKNECIKFVDLVFESILKNFEEGNKVKVSLFGSFDVKDKKARIGR 65

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+T +E  I++ +V +F+  K L   +N
Sbjct: 66 NPKTKEEKEISSRRVVTFKPSKFLSKKIN 94


>UniRef50_C5VHN4 HimA protein n=9 Tax=Prevotella RepID=C5VHN4_9BACT
          Length = 97

 Score = 90.5 bits (224), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (51%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN  + I  +AA    ++  + + +  ++  + +S + GD V ++GFGTF VK+R  R  
Sbjct: 1  MNNKEFIAALAARTGYTQDESQKMVKTVVDMMGKSFETGDPVPVIGFGTFEVKKRLERVM 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP TG  + +    V +F+    +K  V
Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAATIKGHV 89


>UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium RepID=C3WAE9_FUSMR
          Length = 106

 Score = 90.1 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADI-SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K + ++   A A++ +K  A +   A + ++ E L +GD VA +GFG F   +RA RT
Sbjct: 1  MTKKEFVELFGAKAELKTKVEAEKLTKAFLETLEEVLVKGDSVAFIGFGKFEAAKRAERT 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
            NPQT K + IAA KV  F+ GK L + +N
Sbjct: 61 CINPQTKKPMKIAARKVAKFKPGKNLLEKMN 91


>UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium roseum DSM 5159
          RepID=B9KZB7_THERP
          Length = 92

 Score = 90.1 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 56/89 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS LI  +A   +  ++     ++A+  ++ E+L +G++V++ GFGTF V ERA R G
Sbjct: 1  MRKSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+T + I I A + PSFR G  LK AV
Sbjct: 61 RNPRTNEPIEIPARRSPSFRPGTQLKRAV 89


>UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidum RepID=DBH_TREPA
          Length = 105

 Score = 90.1 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 50/88 (56%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +S ++D +    D+S+    R +D+ ++ VT +L+ G+ V L  FG F  + R A  G+
Sbjct: 7  TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          + +TG+ ++I +  V  FR  K LK AV
Sbjct: 67 SIKTGEVVSIPSHCVVVFRPSKRLKSAV 94


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID...   118   5e-26
UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri...   115   5e-25
UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID...   114   7e-25
UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel...   114   1e-24
UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B...   114   1e-24
UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi...   112   2e-24
UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH...   112   4e-24
UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ...   111   7e-24
UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A...   110   9e-24
UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep...   110   1e-23
UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr...   110   1e-23
UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa...   110   1e-23
UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT       109   2e-23
UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D...   109   2e-23
UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba...   109   3e-23
UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al...   109   4e-23
UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D...   109   4e-23
UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr...   108   6e-23
UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH   108   6e-23
UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T...   108   6e-23
UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re...   108   6e-23
UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al...   107   1e-22
UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter...   107   1e-22
UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr...   107   1e-22
UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ...   107   1e-22
UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr...   107   1e-22
UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr...   106   2e-22
UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P...   106   2e-22
UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R...   105   4e-22
UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce...   105   4e-22
UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l...   105   6e-22
UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ...   104   7e-22
UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ...   104   7e-22
UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr...   104   8e-22
UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T...   104   8e-22
UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T...   104   1e-21
UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par...   104   1e-21
UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R...   104   1e-21
UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete...   104   1e-21
UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr...   103   1e-21
UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba...   103   2e-21
UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 T...   103   2e-21
UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga...   103   2e-21
UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ...   103   2e-21
UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=...   103   2e-21
UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D...   103   2e-21
UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia...   103   2e-21
UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 T...   103   2e-21
UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios...   103   2e-21
UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T...   102   3e-21
UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al...   102   3e-21
UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr...   102   3e-21
UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T...   102   4e-21
UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr...   102   5e-21
UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba...   101   6e-21
UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie...   101   6e-21
UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T...   101   7e-21
UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ...   101   8e-21
UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D...   100   1e-20
UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI...   100   1e-20
UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube...   100   1e-20
UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C...   100   2e-20
UniRef50_Q6ANC3 Related to integration host factor, alpha subuni...   100   2e-20
UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T...   100   2e-20
UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale...   100   2e-20
UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc...    99   3e-20
UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha...    99   3e-20
UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G...    99   3e-20
UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact...    99   3e-20
UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G...    99   3e-20
UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil...    99   3e-20
UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re...    99   4e-20
UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=P...    99   4e-20
UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr...    99   5e-20
UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga...    99   6e-20
UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso...    99   6e-20
UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti...    98   6e-20
UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding p...    98   7e-20
UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B...    98   8e-20
UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopi...    98   8e-20
UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=ro...    98   9e-20
UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ...    98   1e-19
UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 T...    98   1e-19
UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria...    98   1e-19
UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr...    98   1e-19
UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID...    97   1e-19
UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T...    97   2e-19
UniRef50_B1A4K2 Integration host factor subunit A-like protein n...    97   2e-19
UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH    97   2e-19
UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 T...    97   2e-19
UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p...    97   2e-19
UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T...    97   2e-19
UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep...    96   2e-19
UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin...    96   3e-19
UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D...    96   3e-19
UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ...    96   3e-19
UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter...    96   3e-19
UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr...    96   4e-19
UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T...    96   4e-19
UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand...    96   4e-19
UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R...    96   5e-19
UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a...    96   5e-19
UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T...    95   5e-19
UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A...    95   5e-19
UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu...    95   5e-19
UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctom...    95   5e-19
UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla...    95   6e-19
UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto...    95   6e-19
UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T...    95   7e-19
UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T...    95   7e-19
UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re...    95   7e-19
UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G...    95   7e-19
UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ...    95   7e-19
UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A...    95   8e-19
UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 ...    95   8e-19
UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 T...    95   8e-19
UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ...    94   9e-19
UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabac...    94   9e-19
UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellul...    94   1e-18
UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0...    94   1e-18
UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Des...    94   1e-18
UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ...    94   1e-18
UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteob...    94   1e-18
UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T...    94   1e-18
UniRef50_A0L712 Histone family protein DNA-binding protein n=5 T...    94   1e-18
UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A...    94   2e-18
UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T...    94   2e-18
UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ...    94   2e-18
UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 T...    94   2e-18
UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T...    94   2e-18
UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R...    93   2e-18
UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ...    93   2e-18
UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo...    93   3e-18
UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th...    93   3e-18
UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D...    93   3e-18
UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 ...    93   3e-18
UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria...    92   3e-18
UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ...    92   4e-18
UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein...    92   4e-18
UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T...    92   4e-18
UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidale...    92   4e-18
UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ...    92   4e-18
UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph...    92   4e-18
UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T...    92   4e-18
UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bactero...    92   5e-18
UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone...    92   5e-18
UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi...    92   5e-18
UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T...    92   5e-18
UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bactero...    92   5e-18
UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacterida...    92   5e-18
UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace...    92   6e-18
UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabac...    91   7e-18
UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfo...    91   8e-18
UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=R...    91   8e-18
UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 T...    91   8e-18
UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_...    91   9e-18
UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T...    91   1e-17
UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1...    91   1e-17
UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=...    91   1e-17
UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=B...    91   1e-17
UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T...    91   1e-17
UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobact...    91   1e-17
UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T...    91   1e-17
UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bactero...    90   2e-17
UniRef50_C9LHL9 Putative integration host factor IHF alpha subun...    90   2e-17
UniRef50_B7JAF9 Integration host factor, alpha subunit, putative...    90   2e-17
UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylo...    90   2e-17
UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T...    90   3e-17
UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=K...    89   3e-17
UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax...    89   3e-17
UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T...    89   4e-17
UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium...    89   4e-17
UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Ta...    89   5e-17
UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T...    89   5e-17
UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 T...    89   5e-17
UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen...    89   6e-17
UniRef50_C8X523 Histone family protein DNA-binding protein n=2 T...    88   6e-17
UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta...    88   7e-17
UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=A...    88   7e-17
UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bactero...    88   8e-17
UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 ...    88   9e-17
UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 T...    88   9e-17
UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabac...    88   9e-17
UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T...    88   1e-16
UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr...    87   1e-16
UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi...    87   1e-16
UniRef50_B8II37 Histone family protein DNA-binding protein n=1 T...    87   1e-16
UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacte...    87   1e-16
UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell...    87   1e-16
UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida...    87   2e-16
UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide...    87   2e-16
UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteri...    87   2e-16
UniRef50_A7HII4 Histone family protein DNA-binding protein n=4 T...    87   2e-16
UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 ...    87   2e-16
UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidu...    87   2e-16
UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s...    87   2e-16
UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet...    87   2e-16
UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Ta...    86   2e-16
UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T...    86   2e-16
UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=M...    86   2e-16
UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T...    86   2e-16
UniRef50_A5CZB4 Bacterial nucleoid DNA-binding protein n=1 Tax=P...    86   2e-16
UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 T...    86   3e-16
UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S...    86   4e-16
UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=...    86   4e-16
UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 T...    86   4e-16
UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaprote...    86   4e-16
UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=...    86   5e-16
UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptun...    85   5e-16
UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Ca...    85   5e-16
UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=...    85   5e-16
UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bactero...    85   6e-16
UniRef50_A6L5E9 Putative integration host factor IHF alpha subun...    85   6e-16
UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P...    85   7e-16
UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Cur...    85   7e-16
UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2...    85   8e-16
UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales Rep...    85   9e-16
UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 T...    85   9e-16
UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria...    84   9e-16
UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T...    84   9e-16
UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID...    84   1e-15
UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium Re...    84   1e-15
UniRef50_B7B9I2 Putative uncharacterized protein n=3 Tax=Parabac...    84   1e-15
UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomy...    84   1e-15
UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria Re...    84   1e-15
UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bactero...    84   1e-15
UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri...    84   1e-15
UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. S...    84   1e-15
UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergen...    84   1e-15
UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria Re...    84   1e-15
UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus...    84   1e-15
UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococc...    84   2e-15
UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabac...    84   2e-15
UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus...    84   2e-15
UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytop...    83   2e-15
UniRef50_C7H232 DNA binding protein HU n=3 Tax=Ruminococcaceae R...    83   2e-15
UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteri...    83   3e-15
UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=M...    83   3e-15
UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepI...    83   3e-15
UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 ...    83   3e-15
UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=A...    83   3e-15
UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus...    83   3e-15
UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ...    83   3e-15
UniRef50_Q98RC2 DNA-BINDING PROTEIN HU n=2 Tax=Mycoplasma RepID=...    83   3e-15
UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 T...    82   4e-15
UniRef50_A3EV93 Putative integration host factor, alpha subunit ...    82   4e-15
UniRef50_D1XWL2 DNA-binding protein HU n=1 Tax=Prevotella bivia ...    82   4e-15
UniRef50_Q3BZX6 Histone-like family DNA-binding protein n=1 Tax=...    82   4e-15
UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=D...    82   5e-15
UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T...    82   5e-15

Sequences not found previously or not previously below threshold:

>UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD
          Length = 90

 Score =  118 bits (297), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ LI+ +A  A++SK  A +A+DA+  S+T +LKEG  V LVGFG+F V+ER+AR G
Sbjct: 1  MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+EI I A K P+F+ GK LKDAVN
Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAVN 90


>UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria
          RepID=DBH5_RHILE
          Length = 91

 Score =  115 bits (288), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+  +A  A ++K+ A  A+DA+   V   LK   D+ L GFG+F V  RAA  G
Sbjct: 1  MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG E+ I A  VP F  GK LKDAVN
Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVN 90


>UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU
          Length = 92

 Score =  114 bits (287), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 71/89 (79%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+ +A  +++SK  A +A+D++  ++ ++LK GD + L+GFG F V+ER+AR G
Sbjct: 1  MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI I A+KVP+F+ GKALKDAV
Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAV 89


>UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms
          RepID=IHFB_HALHL
          Length = 102

 Score =  114 bits (285), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+ IA     ++      A+  ++  ++E+L  G  + + GFG+F++  R AR 
Sbjct: 1  MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + + A  VP F+ GK L++ VN
Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERVN 91


>UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria
           RepID=Q2W3I2_MAGSA
          Length = 136

 Score =  114 bits (285), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 65/88 (73%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           NK+ L+  +A  A +SKA A +A+D +  ++T +LK GD+V LVGFGTFAV  RAA  GR
Sbjct: 48  NKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEGR 107

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+TG++I+I A+K P F+AGK LKD +
Sbjct: 108 NPRTGEKISIPASKQPKFKAGKGLKDGI 135


>UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms
          RepID=DBH_XYLFT
          Length = 94

 Score =  112 bits (282), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 73/89 (82%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LID +AA A++SK  AGRA+DA++  +TE+LKEGD V LVGFGTF V++RA R G
Sbjct: 1  MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ I IAA+  PSF+ GKALKDAV
Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAV 89


>UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD
          Length = 90

 Score =  112 bits (280), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 65/89 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI ++A    +SK  AG  ++ +   + ESL +GD V L+GFG F V+ERAAR G
Sbjct: 1  MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI IAA K P+F+AGK LKDAV
Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAV 89


>UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA
          Length = 91

 Score =  111 bits (279), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI  IA  A++SK AA   ++A ++ VT+ LK+G+DV LVGFGTF   + A R G
Sbjct: 1  MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ +TIAA K P FR+GKALKDAVN
Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAVN 90


>UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria
           RepID=Q2W5P8_MAGSA
          Length = 117

 Score =  110 bits (277), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           MNK  L++K+A  + +SKAAA   +DA  A++T +LK GDDV LVGFG+F+V +RAA+ G
Sbjct: 27  MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG  I IAA+K P F AGK LKDAVN
Sbjct: 87  RNPRTGATIKIAASKAPKFTAGKGLKDAVN 116


>UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH
          Length = 91

 Score =  110 bits (277), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/90 (55%), Positives = 72/90 (80%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS L+  I+  ++++KA + RALDA+  ++T +L  GD+VA+ GFG+F V++RAARTG
Sbjct: 1  MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ I I A+KVP+F+AGK LK++VN
Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESVN 90


>UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria
          RepID=Q1D6M8_MYXXD
          Length = 127

 Score =  110 bits (276), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M +S+LI++I      + +      + A+   ++++L  G  + L GFG F V+ R ART
Sbjct: 1  MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ +++ A +  SF AGK L++ +N
Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERLN 91


>UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544
          RepID=C9KMW2_9FIRM
          Length = 91

 Score =  110 bits (276), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 68/90 (75%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+  +A  A ++K  A +A+ AI  S+ ++L EGD V ++GFGTF VKER+AR G
Sbjct: 1  MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T + I I A+K P+F+AGKALKDAVN
Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALKDAVN 90


>UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT
          Length = 98

 Score =  109 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 65/90 (72%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L++ ++  + +SK      LD  +A++ +SLK+G+ VALVGFGTF   ++ ARTG
Sbjct: 1  MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ + I A  VP F AGK+L++A++
Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAID 90


>UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC
          Length = 90

 Score =  109 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/89 (61%), Positives = 70/89 (78%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ LI+ +A  AD++K  AG A+DA+  S+  SL +G+ V L+GFG F V+ERAAR G
Sbjct: 1  MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTGKEI I A+KVP+F+AGKALKDAV
Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAV 89


>UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria
          RepID=IHFB_THISH
          Length = 96

 Score =  109 bits (273), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+ +A   + ++      ++  ++  ++++L  GD + + GFG+F++  R  R 
Sbjct: 1  MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ +++    VP F+ GK L++ VN
Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERVN 91


>UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria
          RepID=IHFB_OLICO
          Length = 106

 Score =  109 bits (272), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ +IA     + +      ++AI+  +  +L  GD V L GFG F+VK R AR 
Sbjct: 1  MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+ GK +++ +N
Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLN 91


>UniRef50_Q1D6D8 Integration host factor subunit alpha n=24
          Tax=Deltaproteobacteria RepID=IHFA_MYXXD
          Length = 129

 Score =  109 bits (272), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 57/90 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ +I+ +      SK  +   ++ +  ++ E+L+ GD + + GFG F V+++ AR G
Sbjct: 1  MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTGKEI I+A +V +FR  + LK A+N
Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSALN 90


>UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria
          RepID=IHFB_BORPD
          Length = 119

 Score =  108 bits (270), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI  +AA    ++      A+  ++ ++T++L  G  + + GFG+F++ +R+ R 
Sbjct: 1  MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G+++ +   +VP F+AGK L++ V+
Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVD 91


>UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH
          Length = 89

 Score =  108 bits (270), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/89 (68%), Positives = 74/89 (83%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID IAA AD+ KAAAG+ALD +I ++TE+LK+GD V LVGFG+F V ERA R G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+EITI +AK P FR GKALKDA+
Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALKDAL 89


>UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria
          RepID=A4JQB1_BURVG
          Length = 92

 Score =  108 bits (270), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LID +AAGA +SK+ A + + A++ ++T+++   + V L+GFG F+  +R+ARTG
Sbjct: 1  MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+EI IAAA    F AGKA KDAVN
Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAVN 90


>UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5
          Length = 90

 Score =  108 bits (270), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 66/90 (73%), Positives = 75/90 (83%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID IAA AD+ KAAAGRALDA+I SVT +LK GD V LVGFGTF+V +R AR G
Sbjct: 1  MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTGK + IAAAK P F+AGKALK+AVN
Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90


>UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria
          RepID=IHFB_SINMW
          Length = 103

 Score =  107 bits (268), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+  +AA    +        ++A++  +T++L  G+ V L GFG F+VK R +R+
Sbjct: 1  MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG  + +    VP F+ GK L++ +N
Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLN 91


>UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria
          RepID=Q5ZUE2_LEGPH
          Length = 100

 Score =  107 bits (268), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 69/89 (77%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+L+D IA+G+ ++KA A R L+  +A+VT+ LK+GD V + GFG+F+   R+ARTG
Sbjct: 9  MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 68

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTGK I I A++V  F+AGK LK+AV
Sbjct: 69 RNPQTGKTIQIKASRVAKFKAGKNLKEAV 97


>UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria
          RepID=IHFB_RALEJ
          Length = 137

 Score =  107 bits (267), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L++K+AA    +    A  ++  I+ +++++L +G  + + GFG+F +  R  R 
Sbjct: 1  MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G+ + +   +VP F+AGK L++ V+
Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVD 91


>UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria
          RepID=B1I182_DESAP
          Length = 91

 Score =  107 bits (267), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 67/89 (75%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI  +A   +++K  A +AL A++ S+ E+L  GD V LVGFGTF  +ERAAR G
Sbjct: 1  MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI IAA KVP F+AGK L+++V
Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89


>UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria
          RepID=IHFB_PSEPK
          Length = 100

 Score =  107 bits (267), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADI-SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI++I     + S      A+  ++  +++ L  GD + + GFG+F++  RA R 
Sbjct: 1  MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ +++    VP F+ GK L+D VN
Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVN 91


>UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria
          RepID=IHFB_PARL1
          Length = 110

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ ++A     + +    R +  I   ++ +L  GD V L GFG F+VK R ART
Sbjct: 1  MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+ GK L++ +N
Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERLN 91


>UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria
           RepID=IHFA_BORA1
          Length = 116

 Score =  106 bits (265), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 51/89 (57%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + K++L + +     ++K  A   +D     + E+L  GD V L GFG F V+++  R G
Sbjct: 12  LTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRPG 71

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG+ I IAA +V +F A + LK  V
Sbjct: 72  RNPKTGETIPIAARRVVTFHASQKLKSTV 100


>UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE
          Length = 90

 Score =  105 bits (263), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 60/90 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +L   IA  AD++K  A R L+A++  +T +L   D V LVGFGTF  + R ARTG
Sbjct: 1  MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +NPQTG+ + I A+   +F+ GKAL+DAVN
Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAVN 90


>UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms
          RepID=IHFB_CAUCN
          Length = 96

 Score =  105 bits (263), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI ++A     +++    R +  I+  +  +L++G  V L GFG  +V+ R ART
Sbjct: 1  MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + + A  VP F++GK L+  +N
Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLN 91


>UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968
          RepID=D1RMX6_LEGLO
          Length = 92

 Score =  105 bits (262), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 63/90 (70%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  I+  + +SK  +  AL+A+I+ +TE L +GD + L GF + +VKE  ARTG
Sbjct: 1  MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+ I IAA+KV SF+ G  LK+A+N
Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAIN 90


>UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria
          RepID=Q0AI99_NITEC
          Length = 90

 Score =  104 bits (261), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 60/90 (66%), Positives = 71/90 (78%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI+ IA  ADI+KA AG ALD  ++++ ++L + D V LVGFGTF V ERAARTG
Sbjct: 1  MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG EI I AAKVP F AGKALKDAVN
Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90


>UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root
          RepID=DBH2_BACSU
          Length = 92

 Score =  104 bits (261), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/89 (51%), Positives = 65/89 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI K+A    +SK     +++ +  +++E+LK G+ V++ GFGTF V+ERAAR G
Sbjct: 1  MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+EI I A K P+F+  KALKDAV
Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAV 89


>UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria
          RepID=IHFB_BURTA
          Length = 107

 Score =  104 bits (261), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ ++A+    +    A  A+  ++ +++++L +G  + + GFG+F +  R AR 
Sbjct: 1  MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G+++ +    VP F+ GK L++ V+
Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERVD 91


>UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus
          Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE
          Length = 112

 Score =  104 bits (261), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 57/90 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ LI++++   ++++  +   ++AI  S+  SL+ GD + + GFG+F  ++R  R G
Sbjct: 1  MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG  + + A K+P F+  K LKD VN
Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELKDVVN 90


>UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria
          RepID=A1AW42_RUTMC
          Length = 91

 Score =  104 bits (260), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 67/90 (74%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID IA  A++SK  A RAL+A   ++T ++   D V L GFG+F V+ RAARTG
Sbjct: 1  MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG  I I A+KV +F+AGKALK+AVN
Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAVN 90


>UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula
          bermudensis HTCC2503 RepID=A3VQA5_9PROT
          Length = 113

 Score =  104 bits (260), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+ ++A     +      + + AI   ++ +L++GD V L GFGTF+VK R ART
Sbjct: 1  MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+AGK +++ +N
Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERLN 91


>UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS
          Length = 92

 Score =  104 bits (260), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/90 (53%), Positives = 62/90 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LID +AA    SKA  G  LD ++  + +++ +GD V L+GFG+F   +RAARTG
Sbjct: 1  MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I I AAK   F AGKA KDAVN
Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVN 90


>UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella
          bronchiseptica RepID=Q7WDC5_BORBR
          Length = 93

 Score =  104 bits (260), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 52/90 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K  LI  ++     S+      +D + ++++E L  G++  L G G F+  +RAARTG
Sbjct: 3  LTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAARTG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ + IAA+    F A K LKD VN
Sbjct: 63 RNPQTGEPVEIAASVAVKFSASKTLKDQVN 92


>UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria
          RepID=IHFB_HERAR
          Length = 101

 Score =  103 bits (258), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI ++A     +    A  A+  I+ +++++L  G  + + GFG+FA+  R  R 
Sbjct: 1  MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G ++ +   +VP F+ GK L++ V+
Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERVD 91


>UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria
          RepID=Q3A4K6_PELCD
          Length = 92

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 58/90 (64%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LID +A    ++   A   ++ ++ +++++L EG  + + GFG+  VK+  A  G
Sbjct: 1  MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+EI +   K+P F+ GK L++ +N
Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERIN 90


>UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 Tax=Ralstonia
          pickettii 12D RepID=C6BPZ9_RALP1
          Length = 94

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+  L   IA  ++ S A   R LDA    VT+++  GD V ++GFGTF+   R AR G
Sbjct: 1  MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP TG+EI + A     F AG  L+ AVN
Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAVN 90


>UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria
          RepID=IHFB_AERS4
          Length = 94

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS LI+++AA    +       A+  I+  +  +L+ GD + + GFG+F++  RA R 
Sbjct: 1  MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG ++ +    VP F+ GK L++ VN
Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91


>UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms
          RepID=DBHA_AERHY
          Length = 90

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/89 (74%), Positives = 72/89 (80%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+QL+D IAA AD+SKA A  AL+ II  +T+SLKEGD V LVGFGTF V  RA RTG
Sbjct: 1  MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTGKEI IAAA VPSF AGKALKDAV
Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAV 89


>UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular
          organisms RepID=IHFA_TOLAT
          Length = 106

 Score =  103 bits (258), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ + + +     ISK  A   ++     +  +L+ G+ V + GFG F ++ +  R G
Sbjct: 3  LTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERPG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG++I I A +V +FR G+ LK  V
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91


>UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN
          Length = 90

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 71/89 (79%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ LID IA  A+++K  A  AL+A + ++T SLKEG+ V L+GFGTF V ERAARTG
Sbjct: 1  MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG EI IAA+KVP+F +GKALKDA+
Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAI 89


>UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia
          RepID=Q2J6X1_FRASC
          Length = 94

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 60/89 (67%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKSQL+D+IA   +  ++ A +A+DA+  ++ E++  G+ V + GFG F   ERAARTG
Sbjct: 1  MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP TG+ + +AA+ VP FR G   K +V
Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSV 89


>UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1
          Tax=Alicyclobacillus acidocaldarius subsp.
          acidocaldarius DSM 446 RepID=C8WVU7_ALIAD
          Length = 90

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 47/90 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +L+ ++ A   + K+   + L+      TE L+ G++V+L   G F    R+AR  
Sbjct: 1  MNKGELVAEVQARVGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARRQ 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ I +       FR   ALK  VN
Sbjct: 61 RNPQTGEMIDVPEKATVRFRPSGALKGRVN 90


>UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae
          RepID=Q8SME4_CYAME
          Length = 112

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 51/89 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M+K++LI  +A    +SK      ++ I++ + + L  G  V LVGFGTF+ + RAAR G
Sbjct: 1  MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + I    V  F  G  LK  V
Sbjct: 61 RNPRTGERLIIPERHVVVFSPGSDLKQQV 89


>UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1
          Tax=Thermomonospora curvata DSM 43183
          RepID=D1A9C1_THECD
          Length = 159

 Score =  102 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 55/89 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++LI+ +AA A    A A R +DA+  ++ + +  G+ V + GFGTF    R ART 
Sbjct: 1  MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + +   + P FRAG+  KD V
Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRV 89


>UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria
          RepID=IHFB_BRUMB
          Length = 94

 Score =  102 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+  IA+    + +      + A+   +T +L EG+ V L GFG F+VK R AR+
Sbjct: 1  MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    VP F+ GK L+D +N
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLN 91


>UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria
          RepID=IHFB_RHOCS
          Length = 93

 Score =  102 bits (255), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI ++A     + +    + +  I   +T++L  GD V L GFG F+VK+R AR 
Sbjct: 1  MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+ + +    +P F+ GK L++ +N
Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLN 91


>UniRef50_C8QX16 Histone family protein DNA-binding protein n=1
          Tax=Desulfurivibrio alkaliphilus AHT2
          RepID=C8QX16_9DELT
          Length = 95

 Score =  102 bits (255), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ LI ++    ++SK+ A   ++  ++   +SL+EG+D+ L GFG F+VK++ +R G
Sbjct: 3  LTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRRG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+E+ +A  +V +F+    L+  VN
Sbjct: 63 RNPQTGEELMLAPRRVITFKPSGLLRQRVN 92


>UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium
          tumefaciens RepID=IHFB_AGRT9
          Length = 102

 Score =  102 bits (254), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+L+D +AA    + +  A  A+DA++  +T +L+ G+ V +  FGTF V+ R AR+
Sbjct: 1  MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP  G  + I    VP FRAGK ++D +N
Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLN 91


>UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria
          RepID=IHFA_NITOC
          Length = 99

 Score =  101 bits (253), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 52/89 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ + + +     ++K  A   ++     +  +L++G+ V L GFG F ++++  R G
Sbjct: 3  LTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERPG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+EI I A +V +FR G+ LK  V
Sbjct: 63 RNPKTGEEIPITARRVVTFRPGQKLKARV 91


>UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi
           RepID=A5CCR4_ORITB
          Length = 125

 Score =  101 bits (253), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1   MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
           +NK++ ++ I     +++KA   RAL+ I+  V ++++ G D+ +VGFG+F V+ RAAR 
Sbjct: 34  LNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAARD 93

Query: 60  GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           G NP+TG +I I  +    F+ GK LKDA N
Sbjct: 94  GHNPKTGAKIIIPESYQVVFKPGKTLKDACN 124


>UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio
          vulgaris RepID=A1VFK7_DESVV
          Length = 91

 Score =  101 bits (252), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/90 (52%), Positives = 62/90 (68%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADI-SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K++L++KI A A + +KA A  ALDA IA + +++  G+ V   GFG+F V +RAAR 
Sbjct: 1  MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GRNP+TG+EI I A KV  F  GK LKDAV
Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAV 90


>UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales
          RepID=A6TJN4_ALKMQ
          Length = 92

 Score =  101 bits (252), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ L+ K+A  ++++K  A  AL++ + SV E+L +GD V LVGFGTF V+ER  R G
Sbjct: 1  MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60

Query: 61 RNPQTGKE-ITIAAAKVPSFRAGKALKDAVN 90
          RNP+  ++ I I A+K P F+AGK LK+ +N
Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKIN 91


>UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA
          Length = 91

 Score =  100 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/90 (53%), Positives = 63/90 (70%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI  +A  + ++K  A  AL A+I SV E+L++G+ V LVGFGTF  +ERAAR G
Sbjct: 1  MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T + I I A  VP F+AGK  KD VN
Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKVN 90


>UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM
          Length = 91

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 66/90 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN  +L   +A    +S+A AGRA+ A + +++ESL +   V+L+GFGTF+V ERAAR G
Sbjct: 1  MNLGELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG++I I+A++   F+AG++L++ VN
Sbjct: 61 RNPQTGEKINISASRTIRFKAGQSLREKVN 90


>UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855
          RepID=Q2S2T0_SALRD
          Length = 100

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ LID+IA G  ++K      ++  + +V  ++KEG  + L  FG F V+ RA RTG
Sbjct: 3  MTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRTG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQT + + I     P FR    L +AV+
Sbjct: 63 RNPQTNEPVEIEDRYKPVFRPSDKLSEAVD 92


>UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6
          Length = 93

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 63/90 (70%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI  +A  + ++K  A  AL A I SV E+L+ G+ V LVGFGTF  +ERA R G
Sbjct: 1  MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T +EITI A+  P F+AGK LK+ VN
Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKVN 90


>UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2
           Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS
          Length = 103

 Score = 99.8 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 55/90 (61%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + + ++ +++      S+      +D+ +  + ++L EG+ + LV FGTF V+++A RTG
Sbjct: 13  LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ ITI   +  SFR  K L++ VN
Sbjct: 73  RNPRTGEPITITKRQAVSFRPSKKLREQVN 102


>UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6
          Tax=Cystobacterineae RepID=A7H8A7_ANADF
          Length = 126

 Score = 99.8 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS LI+ +     +++  A   ++ I  S+ ++L  G+++ + G G F VK      G
Sbjct: 1  MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I +   +   FR GK L+D VN
Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRVN 90


>UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales
          RepID=A6LB49_PARD8
          Length = 94

 Score = 99.8 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+ +A    + K  A + LDA I  VTE + E +++ LVGFGT   + +  R  
Sbjct: 1  MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG  + I A     F+ GK L +A+N
Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFLLEAMN 90


>UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC
          29149 RepID=A7AXT3_RUMGN
          Length = 92

 Score = 99.4 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M +S LI  IA     +++  A   +   + S+ ++L  GD V  VGFG+F V+ERA RT
Sbjct: 1  MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNPQ G EI I  +K   F+AGK LKD VN
Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKVN 91


>UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1
          Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
          pisum) RepID=C4K6F1_HAMD5
          Length = 114

 Score = 99.4 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+QLID+IA  A I+K  A   L+ I+  +TESLK+ + V LVGFGTF VK R AR  
Sbjct: 1  MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+ I + A  VPS    KALKDA+
Sbjct: 61 RNPQTGEPIELPACYVPSLNFAKALKDAL 89


>UniRef50_Q12NT8 Integration host factor subunit alpha n=35
          Tax=Gammaproteobacteria RepID=IHFA_SHEDO
          Length = 99

 Score = 99.4 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 55/89 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+++ + +     ++K  A   +++    + E+L+ G+ V L GFG F ++++  R G
Sbjct: 3  LTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRPG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG++I I+A +V +FR G+ LK  V
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARV 91


>UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria
           RepID=Q7WX14_RALEH
          Length = 114

 Score = 99.4 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/91 (45%), Positives = 65/91 (71%), Gaps = 1/91 (1%)

Query: 1   MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
           M K++LI+ IAAG   ++KA A  AL+  + ++ +++ +GD ++LVGFGTF+  ERA R 
Sbjct: 22  MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81

Query: 60  GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
            RNP+TG+EI + AA+   F+AG+  ++AVN
Sbjct: 82  ARNPRTGEEIKVEAARTVKFKAGQRFREAVN 112


>UniRef50_Q12ND8 Integration host factor subunit beta n=185
          Tax=Gammaproteobacteria RepID=IHFB_SHEDO
          Length = 95

 Score = 99.4 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+K+A   + +S      A+  ++  +  +L+ GD + + GFG+F++  RA RT
Sbjct: 1  MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG  + +    VP F+ GK L++ V+
Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERVD 91


>UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae
           BRL-230010 RepID=UPI0001693F3B
          Length = 114

 Score = 99.0 bits (246), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 61/90 (67%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           MNK QL++ +A  +  SK  A +A+  ++ S+ E+LK+G +V LVGFG F V+ R AR G
Sbjct: 23  MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RN +TG+E+ + A KVP F AG  LK A+N
Sbjct: 83  RNRKTGEEVELPAGKVPVFTAGITLKKALN 112


>UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE
          Length = 92

 Score = 99.0 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 60/90 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK + ++ +A   D+S+A A RAL  ++  + E +  G+ VA  GFG+F V ERA RTG
Sbjct: 1  MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG  I IAA++VP F AG  LK A+N
Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAIN 90


>UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=Planctomycetaceae
          RepID=C1ZKD3_PLALI
          Length = 171

 Score = 99.0 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 47/89 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +++  I+    +++      +     ++ E+L     + L  FG F VK+RAAR  
Sbjct: 1  MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG ++ +    V +F+ GK +++ V
Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKV 89


>UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria
          RepID=IHFB_NITEC
          Length = 105

 Score = 98.7 bits (245), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI K+A     +    A   +  I+ ++ +SL  G+ + + GFG+F +  R +R 
Sbjct: 1  MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP++G+++ +    VP F+AGK +++ ++
Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELID 91


>UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms
          RepID=DBH1_RHILE
          Length = 91

 Score = 98.7 bits (245), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+  +A  A ++KA A  A+DA+  +V   LK G D+ L GFG+F+V  R A  G
Sbjct: 1  MNKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG E+ I A  VP F AGK LKDAVN
Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90


>UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani
          RepID=Q3J6Y8_NITOC
          Length = 94

 Score = 98.7 bits (245), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 65/89 (73%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L++ +   A++S+A A RA++A+  ++T  L E   V LVGFG+F+V++RAAR+G
Sbjct: 1  MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R+PQ+G+ I I A   P+F+  KALK+ V
Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKEIV 89


>UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27
          RepID=C1A906_GEMAT
          Length = 110

 Score = 98.3 bits (244), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 6/95 (6%)

Query: 1  MNKSQLID----KIAAGAD--ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKE 54
          M K+ L++    +IA  A   ISK    R +DA + ++ E+L+E  ++ + GFGTF +++
Sbjct: 1  MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60

Query: 55 RAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R  R  RNP+TG  + ++A  VP F+  K L+  V
Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMV 95


>UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding protein n=8
           Tax=Rhizobiales RepID=C5B6T6_METEA
          Length = 163

 Score = 98.3 bits (244), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 1   MNKSQLIDKIA-AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
           M +S+L+ ++A     + +      + A++A + ++L  GD V + GFG F+ K+  AR 
Sbjct: 59  MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118

Query: 60  GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           GRNP+TG+ + +A  K   FR GK ++  +
Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQRL 148


>UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales
           RepID=IHFA_POLNA
          Length = 123

 Score = 98.3 bits (244), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 51/89 (57%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + K+ L + +     ++K  +   +DA    +++ L EG DV + GFG F ++ +A R G
Sbjct: 13  LTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRPG 72

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG+ I I + +V +F A   LK+ +
Sbjct: 73  RNPRTGEAIPIESRRVVTFHASHKLKEQI 101


>UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopirellula marina DSM
           3645 RepID=A4A2Z0_9PLAN
          Length = 159

 Score = 97.9 bits (243), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 49/88 (55%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            K +++  I+    +++      +     ++ ++L E   + L  FG F VK+RAAR  R
Sbjct: 21  TKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARKAR 80

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+TG+++ + +  V +F+ GK +++ V
Sbjct: 81  NPRTGEKVYVPSKFVVTFKPGKEMEERV 108


>UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=root
          RepID=Q1V2L3_PELUB
          Length = 91

 Score = 97.9 bits (243), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 58/90 (64%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK QLI +++   ++SKA A R  D I  ++ ++LK  D V + GFGT+ V +R AR G
Sbjct: 1  MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG++I I A++   F   KALK+  N
Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKEIFN 90


>UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14
          Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG
          Length = 101

 Score = 97.9 bits (243), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +L   IA  AD++K  A + L+AI+ S+T +L +   V LVGFGTF  + R ARTG
Sbjct: 1  MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDKD-TVTLVGFGTFEKRHRGARTG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +NPQTG+ + I A+   +F+ GK LKD+VN
Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLKDSVN 89


>UniRef50_B2IE05 Histone family protein DNA-binding protein n=2
           Tax=Alphaproteobacteria RepID=B2IE05_BEII9
          Length = 171

 Score = 97.9 bits (243), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 47/89 (52%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            +  L   +     IS+  A R +  +++ +TE+L  G++V L  FG F ++ +  R GR
Sbjct: 73  TRKDLASSVYDCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRIGR 132

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+TG    I   +V  F+A K L D +N
Sbjct: 133 NPRTGVAAVIPPRRVLKFKASKVLLDRLN 161


>UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria
          RepID=Q0AZ79_SYNWW
          Length = 110

 Score = 97.5 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 61/85 (71%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+L+  +A  A+I++  A + LDA++ S+ ++L  GD V ++GFG+F V++R  R  
Sbjct: 1  MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           +P TGKEIT+ A KVP+F+ GK+L
Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85


>UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria
          RepID=Q39VS3_GEOMG
          Length = 91

 Score = 97.5 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ ++++I      SK  +   ++ +   + E+L+ G+ + + GFG F VKE+A R G
Sbjct: 1  MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG EI I+A ++ +F+  + LK ++N
Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSIN 90


>UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO
          Length = 91

 Score = 97.1 bits (241), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/88 (55%), Positives = 65/88 (73%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NK  LI K+A   +++K  +  A+D + +S+   L +G+ V L+GFG F V+ERAAR GR
Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NPQTG EI IAA+KVP+F+AGKALKDAV
Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAV 90


>UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2QWH5_9PLAN
          Length = 180

 Score = 97.1 bits (241), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 48/88 (54%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            K +++  I+    +++      +     ++ E+L E   + L  FG F VKERAAR  R
Sbjct: 58  TKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARKAR 117

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+TG+ + +A   V +F+ GK +++ V
Sbjct: 118 NPRTGQPVYVAEKFVVTFKPGKEMEEKV 145


>UniRef50_B1A4K2 Integration host factor subunit A-like protein n=2
          Tax=Gammaproteobacteria RepID=B1A4K2_9GAMM
          Length = 112

 Score = 97.1 bits (241), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +  L   +A     +   A   +D     + ++L +G++V L GFG F ++++ AR GR
Sbjct: 4  TRKDLAYYLADTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARPGR 63

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+T   + I A +V +F A ++LK   N
Sbjct: 64 NPKTKVPVEITARRVVTFHASQSLKGHCN 92


>UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH
          Length = 91

 Score = 97.1 bits (241), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  +   AD++K  A   ++    S+TE+L   + V + G  +F +KE  + TG
Sbjct: 1  MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG ++TI A K+P F+ GK LK+ V+
Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERVD 90


>UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3
          Tax=Methylobacterium sp. 4-46 RepID=B0UCA4_METS4
          Length = 102

 Score = 97.1 bits (241), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M ++QLI ++AA    +    A   + A++  +TE+L EGD + L GFG      R AR 
Sbjct: 1  MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ + + A +  +FRA + + + +N
Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERLN 91


>UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA
          replication and in rpo translation n=3
          Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT
          Length = 89

 Score = 96.7 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 58/89 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+QL+  +A  ++++K  A  AL ++   +T+SL EGD V + GFGTFA+    ARTG
Sbjct: 1  MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG  I I  A    F+A KALKD +
Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALKDVL 89


>UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter
          succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS
          Length = 124

 Score = 96.7 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 47/89 (52%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K  LI +IA      +      ++  +  + E L EG+ + + GFGTFA K R AR  R
Sbjct: 5  TKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARPAR 64

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG+ + I    VP+F+    +KD +N
Sbjct: 65 NPRTGETVLIDERLVPTFKFSNDIKDKIN 93


>UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH
          Length = 90

 Score = 96.4 bits (239), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 52/89 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +LI ++A  A++ K      +DA+   + E L  G ++ L   G F ++E+AAR G
Sbjct: 1  MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + I A +   F   KALKDAV
Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALKDAV 89


>UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis
          RepID=B2RHA9_PORG3
          Length = 88

 Score = 96.4 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 57/85 (67%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+  I  +A  A+++KA A RA++A    VTE +  G+ +AL+GFGTF+V ERAAR G
Sbjct: 1  MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           NP+T K I+I A KV  F+ G  L
Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTL 85


>UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio
          acetiphilus DSM 12809 RepID=C1SGM2_9BACT
          Length = 91

 Score = 96.4 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 47/90 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ +++ I     ++K    + +D +   V + +   ++V + GFG F VK+R  R G
Sbjct: 1  MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG E  I    V  FR  +  KD VN
Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEVN 90


>UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae
          RepID=B4S407_PROA2
          Length = 103

 Score = 96.4 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 52/88 (59%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K+ L++ I+    ++K      +D +  S+ +SLK G  + + GFG+F ++ +  R  R
Sbjct: 6  TKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERLAR 65

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NP+TG+++++ A  VP+F+  K  K AV
Sbjct: 66 NPRTGEKVSVEAKNVPTFKISKEFKHAV 93


>UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria
          RepID=Q121G1_POLSJ
          Length = 103

 Score = 96.0 bits (238), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 65/90 (72%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++LID IAA  D+SKAA GR L+ ++ ++ +++K+GD V LVGFGTF   +RAARTG
Sbjct: 1  MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +NP+TG+ + I A  VP F AG   K  V+
Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVVD 90


>UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria
          RepID=IHFB_MANSM
          Length = 94

 Score = 96.0 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI+ +      IS  +   A+  I+  ++++L+ GD + + GFG+F++  R  R 
Sbjct: 1  MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG ++ + A  VP F+AGK L++ V+
Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERVD 91


>UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi
          (class) RepID=A9AXB4_HERA2
          Length = 95

 Score = 96.0 bits (238), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 55/89 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K + I ++A    ISK  A R +DA++  V+E L+ G+ V L GFGTF V+ER AR G
Sbjct: 1  MQKIEFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+T + +TI A K P F A  +LK  V
Sbjct: 61 VNPKTRERMTIEATKTPGFSASNSLKLLV 89


>UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)
          RepID=C4K4H0_HAMD5
          Length = 119

 Score = 95.6 bits (237), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 61/89 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+++   + ++KA +  A+ A+ +S+ E+L + + V ++ FGTF V+ R  R  
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG++I   A +V  F AGK+LKD+V
Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSV 89


>UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales
          RepID=IHFA_RHOP2
          Length = 123

 Score = 95.6 bits (237), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +  L + +     +S+  +   ++ ++  +T+ L++G+ V L  FG+F V+++  R GR
Sbjct: 9  TRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIGR 68

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG E+ I+  +V  F+    LK  +N
Sbjct: 69 NPKTGTEVPISPRRVMVFKPSAILKQRIN 97


>UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
          replication and in rpo translation n=34 Tax=root
          RepID=B3R809_CUPTR
          Length = 92

 Score = 95.6 bits (237), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K++LID IAAG   ++KA A +AL+  ++++ +++ +GD ++L+GFGTF+  ER  R 
Sbjct: 1  MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+EI + AAK   F+AG+  KDAVN
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91


>UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter
          sphaeroides ATCC 17025 RepID=A4WS11_RHOS5
          Length = 90

 Score = 95.2 bits (236), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 46/82 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +NKS L+  +A    +S+ A    LD  +  +  +++ GD + L GFG+F  + R ARTG
Sbjct: 4  LNKSDLVSTVAEKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPARTG 63

Query: 61 RNPQTGKEITIAAAKVPSFRAG 82
          RNP+TG+ + I A+    F   
Sbjct: 64 RNPRTGEAVAIPASTSIGFTPS 85


>UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14
          Tax=Alphaproteobacteria RepID=IHFA_SILPO
          Length = 100

 Score = 95.2 bits (236), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 56/89 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + +  L + +     +S+  + + +++++  ++++L  G+ V +  FGTF+V++++AR G
Sbjct: 6  LTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARVG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+E+ I   +V +FR    +K+ V
Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKERV 94


>UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901
          RepID=C5BJS4_TERTT
          Length = 93

 Score = 95.2 bits (236), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 54/87 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ L+ ++    ++++  A   ++AI+  VT +L  G+ V L G G+F+V+ R A TG
Sbjct: 1  MRKTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKD 87
           NPQTG+ + IAA     F+AGK L+D
Sbjct: 61 INPQTGEALRIAAKNQIFFKAGKRLRD 87


>UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctomycetaceae
          RepID=A6CAS4_9PLAN
          Length = 148

 Score = 95.2 bits (236), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 45/89 (50%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +++  I+    +++      +     ++ ++L     + L  FG F VK+RAAR  
Sbjct: 1  MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG  + +    V +F+ GK ++  V
Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRV 89


>UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii
           RepID=B6KEZ7_TOXGO
          Length = 235

 Score = 95.2 bits (236), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 50/88 (56%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            +  L+  +AA   + +A   + + A +  ++ SL++G  V+L  FG+  ++ R  R  R
Sbjct: 122 TRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERVAR 181

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+TG+++T+ A   P+F   K LKD V
Sbjct: 182 NPRTGEQLTVPATTFPTFSFSKVLKDKV 209


>UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum
           DSM 43021 RepID=D2BF20_STRRD
          Length = 106

 Score = 95.2 bits (236), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 52/89 (58%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           MNK +LI+K AA A +S+     AL+AI+ ++  ++   D VA+ GFG+F +  + ARTG
Sbjct: 12  MNKRELIEKAAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPARTG 71

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNPQTG+ + IA      F+        +
Sbjct: 72  RNPQTGEPLEIAETWTAKFKPSPGFMGLI 100


>UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6
          Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA
          Length = 97

 Score = 94.8 bits (235), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+Q++++I     +        ++ ++  +  SL+ GDDV + GFG F V++++ R G
Sbjct: 3  LTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRRG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG  I + A KV +F     L+D +N
Sbjct: 63 RNPATGDSIILDARKVVTFTCSGVLRDRIN 92


>UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular
          organisms RepID=B1Y4B9_LEPCP
          Length = 131

 Score = 94.8 bits (235), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/90 (46%), Positives = 57/90 (63%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+ +A    +SKA A R L  ++ +V  ++K+G  V L GFG+F    RAAR G
Sbjct: 1  MNKAELIEVLAKQHTLSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARNG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP TG +I IAA K+P F  G A K AV+
Sbjct: 61 VNPGTGDKIKIAAVKLPKFTPGTAFKAAVD 90


>UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI
          Length = 105

 Score = 94.8 bits (235), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          +N+ QL+ ++A+    +++  AG ALDA +  + ++L +G  V L GFG+F V+ R ART
Sbjct: 7  LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
            +P+TG+ + + AA    F   +AL++ +
Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERL 96


>UniRef50_Q4FQ67 Integration host factor subunit alpha n=10
          Tax=Gammaproteobacteria RepID=IHFA_PSYA2
          Length = 99

 Score = 94.8 bits (235), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + KS +I+ + +  ++++      ++     ++ESL +G +V L GFG F +K++ +R G
Sbjct: 4  LTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRPG 63

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ + ++A +V +F+ G+  +  V+
Sbjct: 64 RNPKTGEPVAVSARRVVTFKTGQKFRQQVD 93


>UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1
          Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS
          Length = 94

 Score = 94.8 bits (235), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          + K+ LI ++      ++KA A  +++A +    ++L  G D+ L GFG F VK++++R 
Sbjct: 3  LTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSRR 62

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNPQTG E+T+ A +V +F+    L+D +N
Sbjct: 63 GRNPQTGDELTLEARRVVTFKPSGILRDKIN 93


>UniRef50_A8LLT5 Integration host factor subunit alpha n=28
          Tax=Alphaproteobacteria RepID=IHFA_DINSH
          Length = 101

 Score = 94.8 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 56/89 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + +  L D +     +S+  + + +++I+  ++++L  G+ V +  FGTF+V++++AR G
Sbjct: 6  LTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARIG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+E+ I   +V +FR    +K+ V
Sbjct: 66 RNPKTGEEVPIHPRRVLTFRPSHLMKERV 94


>UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12
          Tax=Proteobacteria RepID=A1WDL1_ACISJ
          Length = 91

 Score = 94.8 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+  LID IA   + SKAA  R LD++I  V   + +G  V L GFGTF     AARTG
Sbjct: 1  MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG  I I +   P F  G   KD V
Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLV 89


>UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1
          Tax=Methylobacterium nodulans ORS 2060
          RepID=B8IKW1_METNO
          Length = 90

 Score = 94.8 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 50/90 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK  L+  IAA A +S+A   + L A     T+SLK GDDV L G G      + AR G
Sbjct: 1  MNKPDLLKAIAAKAGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+TG+ + I A  VP  RA   L DA+N
Sbjct: 61 HNPRTGQPLQIPARLVPKLRASTTLHDALN 90


>UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN
          Length = 92

 Score = 94.4 bits (234), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 58/89 (65%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K++L+  IA  A I+K  A  AL+A I +VT+SLK G DV LVGFGTF    RAA T R
Sbjct: 3  TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG+ +   A+K   F+ G+ LK ++N
Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSLN 91


>UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabacteroides
          johnsonii DSM 18315 RepID=B7B856_9PORP
          Length = 101

 Score = 94.4 bits (234), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK  L++ I+   ++        ++ +   + +SL E + V +  FG+F +  +A+R  
Sbjct: 1  MNKHSLVEIISDRLNMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRPV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ +         F  GK L D +N
Sbjct: 61 RNPKTGEPMIFQPRNSVKFVPGKHLVDLLN 90


>UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellular organisms
           RepID=A5EU64_BRASB
          Length = 130

 Score = 94.4 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 1   MNKS-QLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
           M  + ++ +KIAA  D++KA A   +D++  ++ ++   G + +L GFG F VK+  AR 
Sbjct: 30  MTTANEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPARE 89

Query: 60  GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           GRNP TG  I IAA++  +F   KA+KD++N
Sbjct: 90  GRNPSTGATIAIAASRKLTFTPAKAIKDSLN 120


>UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2
          Length = 96

 Score = 94.4 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/91 (52%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+L+  IA  +++SK  + RAL+A I +V E+L +G+ V LVGFGTF  +ER AR G
Sbjct: 1  MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60

Query: 61 RNPQTGKE-ITIAAAKVPSFRAGKALKDAVN 90
          RNP+  +E I I A+  P F+AGK+LK+AVN
Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAVN 91


>UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Desulfovibrio
          vulgaris RepID=Q72CZ7_DESVH
          Length = 95

 Score = 94.0 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 1  MNKSQLIDKIA---AGAD--ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKER 55
          MN+ +L+  +          I++    R LD         L EG DV L   G     ER
Sbjct: 1  MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60

Query: 56 AARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          AAR GRNP+TG+ I I A +V +F+AGK L++A+
Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94


>UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2
          Tax=Burkholderiaceae RepID=B2AK36_CUPTR
          Length = 92

 Score = 94.0 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 63/91 (69%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LID IAAG   ++KA A +AL+  ++++ +++  GD + LVGFG+F+  ER  R 
Sbjct: 1  MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG++IT+ AAK   FR G+  KDA N
Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDAAN 91


>UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteobacteria
          RepID=Q1GXQ0_METFK
          Length = 90

 Score = 94.0 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS+L+  I   A+ S A     LDA+ + V E L  G +V L G G  +V ERAAR G
Sbjct: 1  MKKSELVALI-KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARAG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I I A K P F A KALKDAVN
Sbjct: 60 RNPRTGEIIPIEAKKTPKFSAAKALKDAVN 89


>UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio
          aespoeensis Aspo-2 RepID=D1UA57_9DELT
          Length = 92

 Score = 94.0 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 1  MNKSQLIDKIAAG--ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAAR 58
          MNKS+L+D +        SK    +A++  +  + E L + D V + GFG+F     A R
Sbjct: 1  MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60

Query: 59 TGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           GRNP  G+ + I A K   F+ GKALK+AV
Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAV 91


>UniRef50_A0L712 Histone family protein DNA-binding protein n=5 Tax=Magnetococcus
          sp. MC-1 RepID=A0L712_MAGSM
          Length = 91

 Score = 93.7 bits (232), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS+LI  IAA   ++K  A   +D + + + ++L +G+ V L GFG F  + R  R  
Sbjct: 1  MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+++ + +     F+ G  ++  V+
Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRVD 90


>UniRef50_A4YW83 Integration host factor subunit alpha n=41
          Tax=Alphaproteobacteria RepID=IHFA_BRASO
          Length = 119

 Score = 93.7 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 49/89 (55%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +  L + +     +S+  +   ++ ++  +T+ L+ G+ V L  FG+F V+++  R GR
Sbjct: 9  TRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIGR 68

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG E+ I+  +V  F+    LK  +N
Sbjct: 69 NPKTGTEVPISPRRVMVFKPSAILKQRIN 97


>UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3
          Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC
          Length = 101

 Score = 93.7 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ LI  ++  +D+SK  A  A++ I+  +T+ +  G  + + GFG F  K R  R G
Sbjct: 10 MKKTDLILNLSDSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQG 69

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+T +   +    VP F+ GK LK+ VN
Sbjct: 70 INPKTSERTQVGEKFVPFFKPGKLLKEIVN 99


>UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1
          Tax=Candidatus Cloacamonas acidaminovorans
          RepID=B0VJA9_9BACT
          Length = 95

 Score = 93.7 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 54/89 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ L+  I+    I +      +DA++ ++ +S+ +G+ + + GFGTF +K R  R G
Sbjct: 1  MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+T +++ + A  VP+F+  +  K+AV
Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAV 89


>UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 Tax=Magnetococcus
          sp. MC-1 RepID=A0L9H9_MAGSM
          Length = 109

 Score = 93.7 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M+   LI +IA   ++S A     +  ++  V + L   + V L  FG FAVK+     G
Sbjct: 1  MDAKGLIQQIARKRNLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWLG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          R+PQTG+ + +    VP F++   L+  +N
Sbjct: 61 RHPQTGEMMKLPGKNVPFFKSDSELRKRLN 90


>UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum
          terrenum ATCC BAA-798 RepID=D1CFB6_THET1
          Length = 84

 Score = 93.7 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 54/81 (66%)

Query: 3  KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
          K++LI+++A    ++K+   +  + +++ +  SL++G+DV + GFGTF V ER+ R GRN
Sbjct: 4  KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63

Query: 63 PQTGKEITIAAAKVPSFRAGK 83
          P+TG+EI I   K  +FR  K
Sbjct: 64 PRTGEEIEIPGGKRVTFRMSK 84


>UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA
          Length = 88

 Score = 93.3 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 53/87 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +L   +AA + +S++ AG+A+DA+  +V  + K    VA+ GFGTF+ K R AR G
Sbjct: 1  MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKD 87
          RNP T + I I      +F+   ALKD
Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALKD 87


>UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria
           RepID=B1XSK3_POLNS
          Length = 106

 Score = 93.3 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 67/90 (74%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           +NK++LI  IA  A+ISKA A  AL++ I ++ +++ +GD V L+GFGTFA  +RAAR G
Sbjct: 13  LNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ + IAAAK   F AGKA KD+VN
Sbjct: 73  RNPKTGEPLKIAAAKTVKFSAGKAFKDSVN 102


>UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio
          desulfuricans subsp. desulfuricans str. G20
          RepID=Q30VZ6_DESDG
          Length = 95

 Score = 92.9 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1  MNKSQLIDKIAAGADI-----SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKER 55
          M K++L   +     +     +  A    + A +  +T  L  GD V L GFG F V  R
Sbjct: 1  MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60

Query: 56 AARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           AR GRNP+TG+ + I A+    F  GK LK+A+N
Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN 95


>UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio
          yellowstonii DSM 11347 RepID=B5YLD8_THEYD
          Length = 94

 Score = 92.9 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 51/89 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ L++ I     + +    + ++ +  ++ E+L+E + V + GFG F V+ + +R G
Sbjct: 1  MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+T + + I   KV +FR  + LK ++
Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSI 89


>UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP
          Length = 92

 Score = 92.9 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/89 (49%), Positives = 61/89 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS+LI+ I+  +++SK      L+  + ++ +SLK+G+ V LVGFGTF V  RAAR G
Sbjct: 1  MNKSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTG+ I I+A K P F +GK  K A+
Sbjct: 61 RNPQTGQTIHISATKTPVFISGKTFKTAI 89


>UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 Tax=Bacteria
          RepID=D2Q2Y1_9ACTO
          Length = 97

 Score = 92.9 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 52/88 (59%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++L+  +AA A I +  A + LDA+   VTE++ +GD V+L G  +     RA RTG
Sbjct: 1  MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDA 88
          RNPQTG+ ++I A        G  LK A
Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAA 88


>UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria (class)
          RepID=DBH1_STRCO
          Length = 93

 Score = 92.5 bits (229), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEG-DDVALVGFGTFAVKERAART 59
          MN+S+L+  +A  A++++  A   L A    V + + +G + V + GF TF    RAART
Sbjct: 1  MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDA 88
           RNPQTG+ I I A       AG  LK+A
Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89


>UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae
          RepID=Q1DCD2_MYXXD
          Length = 89

 Score = 92.5 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 57/89 (64%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++L++ +AA   ++K +A + LD +  ++ +++K+    +  GFGT++V+ R AR  
Sbjct: 1  MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQT + + + A+K   FR  K LK+++
Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89


>UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp.
          D2 RepID=UPI0001BC7A84
          Length = 88

 Score = 92.5 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 57/86 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI ++A    +S   AG ALD II ++TE++++G+++ LVGFG+F ++ER  R G
Sbjct: 1  MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALK 86
           NP TG  + I A +   FR G  ++
Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGSKMR 86


>UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria
           RepID=Q01W44_SOLUE
          Length = 108

 Score = 92.5 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 50/85 (58%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + K  +I+++     I+K  A  A++ +  S+ ++L++GD + L GFG F VK R    G
Sbjct: 20  LIKLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIG 79

Query: 61  RNPQTGKEITIAAAKVPSFRAGKAL 85
           RNP+TG E++I   K   F+ GK L
Sbjct: 80  RNPRTGAEVSIPPGKAVRFKPGKEL 104


>UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidales
          RepID=A6LHR2_PARD8
          Length = 95

 Score = 92.1 bits (228), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+ +L+  +A    +++A A R + A   + TE+L+    + L+GFGT +  E+  R G
Sbjct: 1  MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+ G    I A K   F+ GK L   +N
Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLLLKQLN 90


>UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms
          RepID=DBH_GUITH
          Length = 93

 Score = 92.1 bits (228), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKSQLI KIA     SK    + + +++  + +++  G+ V LVGFG+F  +ER AR G
Sbjct: 1  MNKSQLISKIAYYTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+++ + A+++P+F  G   ++ VN
Sbjct: 61 RNPRTGEKLFLPASRIPTFSVGNFFRNKVN 90


>UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3
          RepID=C8XUL7_9CAUD
          Length = 92

 Score = 92.1 bits (228), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+++ +  IA+  +I+K  A + + + I  V  ++  G  V LVGFG F VK + AR G
Sbjct: 1  MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP  G+ I I A  V  F+ G+ LK+A N
Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLKNAAN 90


>UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria
           RepID=B1Y0T8_LEPCP
          Length = 116

 Score = 92.1 bits (228), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           NKS+LI+ IA  ADISKAAA RAL+A+I  V  +LK+GD V+LVGFGTFAV +RAAR+GR
Sbjct: 28  NKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARSGR 87

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+TG  I I ++KVP FR GKALKD++N
Sbjct: 88  NPRTGAVIKIKSSKVPKFRPGKALKDSLN 116


>UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bacteroides
          RepID=A7V341_BACUN
          Length = 404

 Score = 92.1 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 41/90 (45%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +N   LID +A    +SK  A   +      + ESL++   V + G GTF + +  +R  
Sbjct: 5  LNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVGSRES 64

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           N  TG+   I      SF    ALKD +N
Sbjct: 65 VNVNTGERFEIQGHTKVSFTPEPALKDIIN 94


>UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT
          (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5
          Length = 113

 Score = 92.1 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 59/89 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LI+++   + ++KA +  A+ A+ +S+ +SL + + V ++ F TF V  R+ R  
Sbjct: 1  MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R+P+TG++I   A +VP F AGK LK +V
Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLKASV 89


>UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi
          RepID=Q5LM20_SILPO
          Length = 91

 Score = 92.1 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 47/90 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+QL+  +A      K  A  ALDA+ A +T  +  G  V L G G    +ER  R  
Sbjct: 1  MTKTQLVAALAEDMGSDKKTASAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERQV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+  T AA KV      KALKD+VN
Sbjct: 61 RNPATGETFTKAADKVVKMTIAKALKDSVN 90


>UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4
          Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT
          Length = 93

 Score = 92.1 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K  LI+ +A       K    +A+D ++ S+ E+L+E   V + GFG+F+V+ER ART
Sbjct: 1  MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           +NP+TGK + I   K   F   K+LKD +
Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGL 90


>UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii
          DSM 20697 RepID=B7AFK0_9BACE
          Length = 106

 Score = 92.1 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 49/89 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  +AA + +    A + + A    + + +  G+ ++  G G F V+E  AR G
Sbjct: 1  MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP TG  + I   KV  F  GK+L++AV
Sbjct: 61 RNPFTGLGMRIPTRKVVKFSPGKSLREAV 89


>UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacteridae
          RepID=DBH1_BIFLO
          Length = 93

 Score = 92.1 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 54/88 (61%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NKS L+ KIA  ++++KA A  A++A      E++K G+ + L G  +    +RAARTGR
Sbjct: 4  NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 63

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NP+TG++I I A+      AG  LK AV
Sbjct: 64 NPRTGEQIDIPASYGVRISAGSLLKKAV 91


>UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae
          RepID=DBH_CAMJR
          Length = 98

 Score = 91.7 bits (227), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/89 (44%), Positives = 59/89 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+  I  +A  A ++K  A  A DA+I+++T+ L +GD ++ +GFGTF+ +ERAAR  
Sbjct: 1  MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R P TGK I + A +V  F+ GK LK+AV
Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89


>UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabacteroides
          johnsonii DSM 18315 RepID=B7B7U9_9PORP
          Length = 99

 Score = 91.3 bits (226), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 41/90 (45%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+  +    AA   +        + A + +V++ L  G  V +  FG+F   E+ +R  
Sbjct: 1  MNRKDIEKITAARLGVPVTTVEPFVQAFLETVSDCLMYGHHVTIQRFGSFRRWEQTSRPV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+   +       F  GK L + +N
Sbjct: 61 RNPRTGEPCMLEPRTSVKFNPGKTLFEKMN 90


>UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC
          29098 RepID=B6WST8_9DELT
          Length = 97

 Score = 91.3 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 1  MNKSQLIDKIAAGA------DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKE 54
          M K  L+  +   +       + +A     L A+     + L  G +V L G G    K+
Sbjct: 1  MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60

Query: 55 RAARTGRNPQTGKEITIAAAKVPSFRAGKAL 85
          RAAR GRNP+TG+ +TI A +V  F   + L
Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKL 91


>UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=Rhodomicrobium
           vannielii ATCC 17100 RepID=D2LEN1_RHOVA
          Length = 245

 Score = 91.3 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 51/90 (56%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           + ++ L + +     + +  A   ++ ++  +  +L+ G+ + L  FG+F +++++ R G
Sbjct: 20  LTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERVG 79

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG+ + I   +V  F+A   +KD +N
Sbjct: 80  RNPKTGEIVPITPRRVIVFKASNIMKDRIN 109


>UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2
          Tax=Acidithiobacillus ferrooxidans RepID=B5ERD0_ACIF5
          Length = 91

 Score = 91.3 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 45/90 (50%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK + +  +A    +SK  A +       ++   L     +   GF TF V E+ AR G
Sbjct: 1  MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+EI I A K   F+AGK   D VN
Sbjct: 61 RNPATGQEIDIPAKKSIKFKAGKEFADKVN 90


>UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8
          Length = 96

 Score = 91.3 bits (226), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 55/88 (62%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K+ L+D++A    + K      +DA++A V E+L  G  V L GFGTF V++R ARTG 
Sbjct: 7  TKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKARTGV 66

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           P T ++I I A + P+F+ GKALKD V
Sbjct: 67 KPGTKEKIKIPATQYPAFKPGKALKDKV 94


>UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3
          Tax=Anaeromyxobacter RepID=B4UEN5_ANASK
          Length = 90

 Score = 91.0 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKI-AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K+ LI+K+ A   D+SK      +D++   + + +++     + GFGTF VK RA R 
Sbjct: 1  MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GRNPQTG EI IA  K   F+    LK A+
Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90


>UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1 Tax=Bacteroides
          fragilis 3_1_12 RepID=UPI0001B4AA8F
          Length = 97

 Score = 91.0 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 46/90 (51%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +LI+ IA  A+I+K     A++       E++  GD + + GFGT + K R A+  
Sbjct: 1  MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN   G  + +    VP F+  KA K  VN
Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQVN 90


>UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio
          magneticus RS-1 RepID=C4XHM4_DESMR
          Length = 92

 Score = 90.6 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +LI  +    ++    A   +++   S+ ++L  GD V + GFG+FAVKE    TG
Sbjct: 1  MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG ++ +   K+P F+ G+  K+ +N
Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKNYLN 90


>UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=Bacteroidales
          RepID=C7XFY9_9PORP
          Length = 98

 Score = 90.6 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+ +L+  +     + K      ++A+   V + ++EG+ +++ GFG+F   +++ R  
Sbjct: 8  MNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERLA 67

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+E+ I       F+AG  L   +N
Sbjct: 68 RNPKTGEEVMITPRVSVKFKAGSDLLKELN 97


>UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter
          succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS
          Length = 116

 Score = 90.6 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 50/89 (56%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K +++D+IA+    ++      ++ +I +++  + EG+++ L GFG F  K+R  R  R
Sbjct: 9  TKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRTR 68

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG+ + I A   P F   K L + +N
Sbjct: 69 NPKTGELVNIPAKVRPVFEPSKDLIEKIN 97


>UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobacteria
          RepID=A6Q378_NITSB
          Length = 91

 Score = 90.6 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 56/89 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++ +  +A  A +SK    + +DA +  +T++LK GD+VA +GFGTF   +RAAR  
Sbjct: 1  MKKAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          + P T + + + A +V  F+ GK LK+AV
Sbjct: 61 KVPGTDRVVKVPATRVVKFKVGKKLKEAV 89


>UniRef50_A0LI64 Histone family protein DNA-binding protein n=6
          Tax=Deltaproteobacteria RepID=A0LI64_SYNFM
          Length = 96

 Score = 90.6 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS+LI+ +A    I+  AA  A++    S+  +L   D + + GFG+F VK      G
Sbjct: 1  MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG+ I + + K+P F+ GK LK+ VN
Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERVN 90


>UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bacteroides
          RepID=C6IG13_9BACE
          Length = 487

 Score = 90.2 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +    LID +AA   ++K  A   +      + ++L+    V + G GTF + +  +R  
Sbjct: 5  LTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRES 64

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           N  TG+   I      SF     L+D +N
Sbjct: 65 VNVNTGERFQIKGHTKVSFTPDTNLRDTIN 94


>UniRef50_C9LHL9 Putative integration host factor IHF alpha subunit n=1
          Tax=Prevotella tannerae ATCC 51259 RepID=C9LHL9_9BACT
          Length = 423

 Score = 90.2 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 1  MNKS----QLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERA 56
          MN+     ++ D  A  A+ISK  A     A    + E L     V + GFGTF V    
Sbjct: 1  MNRKLLLQEVADAFAQRANISKKKAEAFCRAFFDLIEEELTHESFVKIKGFGTFKVITVN 60

Query: 57 ARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           R   N  TG+ I I +    SF     LKD +N
Sbjct: 61 ERESININTGERIRIDSHAKLSFVPDSQLKDLIN 94


>UniRef50_B7JAF9 Integration host factor, alpha subunit, putative n=2
          Tax=Acidithiobacillus ferrooxidans RepID=B7JAF9_ACIF2
          Length = 107

 Score = 89.8 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K  + + +      +   A + +DA    +  ++    ++ L GFG F V+ +++R GR
Sbjct: 4  TKKDVANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRPGR 63

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP+TG+   I A +V +F A   L+   N
Sbjct: 64 NPKTGQPYEIKARRVVTFSASALLRAKSN 92


>UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylobacterium
           extorquens AM1 RepID=C5B569_METEA
          Length = 140

 Score = 89.8 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           M  ++L   +A    +      R + A ++ V E L  G+DV L GFG F V++R AR  
Sbjct: 45  MTLAELESVLAGRLGLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARRR 104

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           ++P+ G+E+ + A +   FR  + L++A+N
Sbjct: 105 KDPRDGRELEVPARRGAVFRPSRLLREALN 134


>UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3
          Tax=Desulfuromonadales RepID=B3EBV2_GEOLS
          Length = 93

 Score = 89.8 bits (222), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 53/90 (58%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K++LI  +A    I+   A   ++ +I  +  +L+ G+ + +  FG F VKE+ AR G
Sbjct: 3  LTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARRG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ ITI   KV SF+    L+ A+N
Sbjct: 63 RNPQTGEAITIEPRKVISFKPSVLLRQAIN 92


>UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=Kytococcus
          sedentarius DSM 20547 RepID=C7NGK9_KYTSD
          Length = 106

 Score = 89.4 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ L   +       +  A + +D ++ ++   +  G  V L GFGTF   ERA RTG
Sbjct: 1  MNKADLARILEPIVG-GQGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRTG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + I     P FR     +  V
Sbjct: 60 RNPRTGEVVRIPGTAGPRFRPSPMFRGFV 88


>UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax=Deinococcus
           RepID=Q1J3J9_DEIGD
          Length = 149

 Score = 89.4 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 51/87 (58%)

Query: 3   KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
           K+QL+D +A    ++K  +  A+ A++  V +++K+G  V L G GT +VK  AARTG  
Sbjct: 53  KTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGVR 112

Query: 63  PQTGKEITIAAAKVPSFRAGKALKDAV 89
           P T + I I A K  +F+    LK ++
Sbjct: 113 PGTSERIQIPAGKKVAFKVASTLKSSL 139


>UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter
          alkaliphilus AHT 1 RepID=C0GE87_9FIRM
          Length = 84

 Score = 89.0 bits (220), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 46/81 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K+ +   IA   +I    A   ++ +I ++TESL  G+ V L GFGTF ++    R  
Sbjct: 1  MIKTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAA 60

Query: 61 RNPQTGKEITIAAAKVPSFRA 81
          RNP+TG+ + + A   P+FRA
Sbjct: 61 RNPKTGETVQVPATHYPTFRA 81


>UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium roseum DSM 5159
          RepID=B9KZB7_THERP
          Length = 92

 Score = 89.0 bits (220), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 56/89 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS LI  +A   +  ++     ++A+  ++ E+L +G++V++ GFGTF V ERA R G
Sbjct: 1  MRKSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+T + I I A + PSFR G  LK AV
Sbjct: 61 RNPRTNEPIEIPARRSPSFRPGTQLKRAV 89


>UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Tax=Bacteria
           RepID=Q6KHG3_MYCMO
          Length = 108

 Score = 88.6 bits (219), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 46/89 (51%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            K  LI  IA   + SK      ++A +  ++  L     + L  FG F + ERAAR+G 
Sbjct: 19  TKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARSGI 78

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           NP+T + I I A K   F+  K+LKD VN
Sbjct: 79  NPKTSEIIQIKATKSVKFKVSKSLKDQVN 107


>UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora
          acidiphila DSM 44928 RepID=C7Q397_CATAD
          Length = 167

 Score = 88.6 bits (219), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 49/88 (55%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NK+ L  ++A     ++  A + +DA+   +   +  G+ V ++GFGTF   +RAAR GR
Sbjct: 3  NKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLGR 62

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NPQTG  I + A   P F AG+  +  V
Sbjct: 63 NPQTGAAIQVPAGTSPRFHAGQTFRTRV 90


>UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1
          Tax=Desulfurivibrio alkaliphilus AHT2
          RepID=C8QYJ3_9DELT
          Length = 97

 Score = 88.6 bits (219), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + +  L   I      S+ +A   +D +   +  +L   + + LV FGTF V+ ++ R G
Sbjct: 6  LTRKDLAKAINEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+TG  + I+   + SFR  K++++ +N
Sbjct: 66 RNPRTGDPMEISKRSMISFRPSKSVRERIN 95


>UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3
          RepID=C2M9J7_9PORP
          Length = 90

 Score = 88.6 bits (219), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 53/85 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+  I  +A  A +++       +AI+ ++ E +K+G+ + LVGFG+F V +RAAR G
Sbjct: 1  MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           NP++GK I I A+K   F+   AL
Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85


>UniRef50_C8X523 Histone family protein DNA-binding protein n=2
          Tax=Desulfovibrionales RepID=C8X523_DESRD
          Length = 98

 Score = 88.3 bits (218), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ ++D I      S+A     ++ ++  + +S+K+   + + GFG F   ++  R G
Sbjct: 6  LTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRKG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQT + IT+    V  FR  +  +  +N
Sbjct: 66 RNPQTEEAITLPGRTVVVFRLSRRFRAELN 95


>UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum
          sp. Group II RepID=A3EUM1_9BACT
          Length = 102

 Score = 88.3 bits (218), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          + KS+LID + A    ++K A    +D + +++T+ + +G  V +VGFG F   +RAART
Sbjct: 9  LTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAART 68

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GRNP TG  I IAA   P F AGKA KD+V
Sbjct: 69 GRNPATGAVIKIAATTTPRFAAGKAFKDSV 98


>UniRef50_B2S525 Integration host factor subunit alpha n=48
          Tax=Alphaproteobacteria RepID=IHFA_BRUA1
          Length = 107

 Score = 88.3 bits (218), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 49/88 (55%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           ++ L + +     +S+  +   ++ I+  V +++  G+ V L  F TF V+++  R GR
Sbjct: 7  TRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGR 66

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NP+TG+E+ I   +V +F+A   LK  +
Sbjct: 67 NPKTGEEVPILPRRVMTFKASNVLKQRI 94


>UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris
          ATCC 43183 RepID=B0NU55_BACSE
          Length = 101

 Score = 88.3 bits (218), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK +L+D IA    ++K  + + L+ II  V E +K+   + L+GFGTF VK++ AR G
Sbjct: 1  MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP T   I I A +V  FR    L   +
Sbjct: 61 MNPSTFVPIEIPAKRVVYFRPSAYLNSLL 89


>UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11
          Tax=Desulfovibrionales RepID=B8DRW9_DESVM
          Length = 97

 Score = 87.9 bits (217), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K++++D I    D ++A     +++++  + +++K+   + + GFG F   ++ AR G
Sbjct: 6  LTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARKG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQT + IT+   KV  FR  +  +  +N
Sbjct: 66 RNPQTDETITLPPRKVVVFRLSRKFRAELN 95


>UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans
          lithotrophicus ES-1 RepID=C6P6T8_9PROT
          Length = 100

 Score = 87.9 bits (217), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          MN+S LI K+A    ++        +  I+  +  ++ +G+ V + GFG+F +  R  R 
Sbjct: 6  MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 65

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDA 88
          GRNP+TG +I +AA   P F+ GKALK+ 
Sbjct: 66 GRNPKTGAKIEVAAKYHPRFKPGKALKEM 94


>UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabacteroides
          RepID=A7AIP7_9PORP
          Length = 91

 Score = 87.9 bits (217), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN+SQLI+ +A    ++K    R +D +   + + +KEG  + L GFG+F  + +++R  
Sbjct: 1  MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN + G  + ++   +  F+    L + +N
Sbjct: 61 RNLKNGTAVQLSPRTIIHFKCAPHLLEQMN 90


>UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum
          ferrodiazotrophum RepID=C6HU01_9BACT
          Length = 99

 Score = 87.9 bits (217), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS L  ++A     I+   A   +D  + ++ E L  GD V +  FG   V E+A R 
Sbjct: 1  MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDA 88
          GRNP+TG  + I A K   F+ G+ALK+A
Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNA 89


>UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group
          RepID=DBH_RICCN
          Length = 99

 Score = 87.5 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 9/99 (9%)

Query: 1  MNKSQLIDKIAAGAD---------ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFA 51
          MNK++ I  +              ++KA A +AL+ ++ SV  ++K   ++ + GFG+F 
Sbjct: 1  MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60

Query: 52 VKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +  R AR GRNP+TG ++ I A   P+FRAG+ +K+A N
Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 99


>UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii
          DSM 11347 RepID=B5YH73_THEYD
          Length = 92

 Score = 87.5 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M KS+LI++++   D ++K      +D I   + E+L  G+ + + GF  F VK+R  R 
Sbjct: 1  MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG++I +   +  +F+  KALK+A+N
Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEALN 91


>UniRef50_B8II37 Histone family protein DNA-binding protein n=1
          Tax=Methylobacterium nodulans ORS 2060
          RepID=B8II37_METNO
          Length = 113

 Score = 87.5 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 1  MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M ++QLI +IA     +    A   +  I+  + E+L + + +AL GFGTF    R AR 
Sbjct: 1  MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          G NP+TG+ + + A +   FRA   +   +N
Sbjct: 60 GHNPRTGEAVAVPARRDVRFRASTEMLHRLN 90


>UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
          3989 RepID=B7CAU3_9FIRM
          Length = 95

 Score = 87.1 bits (215), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 47/89 (52%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NK  L   ++   ++SK  A  A+D I   ++++L     V +  FG F + +R +R G 
Sbjct: 6  NKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRMGI 65

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP T + + I A K+P FR  + LK+  N
Sbjct: 66 NPVTKERMMIQATKLPKFRPSQTLKNKCN 94


>UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella
          RepID=A1S612_SHEAM
          Length = 91

 Score = 87.1 bits (215), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 53/89 (59%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK+ L   IA    +S+  A R L+ I+AS+ ++L+EG+ + L  FGTF ++    R  
Sbjct: 1  MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + +A    PSF+   ALK  +
Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLI 89


>UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia
          stuttgartiensis RepID=Q1Q201_9BACT
          Length = 103

 Score = 87.1 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K  L +KIA   D +     + +   +  +   L +G+ + L  FG F +++RAAR  R
Sbjct: 5  TKRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARKAR 64

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NP+TG+   + +  V  F+ GK +++ V
Sbjct: 65 NPRTGEVAFVPSKNVVVFKVGKLMREKV 92


>UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides
          RepID=C6IB23_9BACE
          Length = 96

 Score = 87.1 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 49/85 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K  LI  IA  +++ K      ++ ++ ++ E+L +G+ V LVGFGTF VKER AR G
Sbjct: 1  MKKIDLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKAL 85
           N  TG+ +TI   K   F+ G  +
Sbjct: 61 YNLSTGEIMTIPGKKTVRFKPGAKM 85


>UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteria
          RepID=B0SI26_LEPBA
          Length = 101

 Score = 87.1 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M KS+++ ++A    ++K      LD+ +    +  K+     + G G    + R  R G
Sbjct: 8  MKKSEMLSELAETTGMTKKNVAAFLDSFVELAYKETKKNGAFVIPGLGKLVKRNRPKRKG 67

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP TG+ I I A  V  F   K  KDAV
Sbjct: 68 RNPATGEAIVIPAKTVVKFTLSKTCKDAV 96


>UniRef50_A7HII4 Histone family protein DNA-binding protein n=4 Tax=Anaeromyxobacter
           RepID=A7HII4_ANADF
          Length = 123

 Score = 86.7 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 45/90 (50%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           M ++Q    +A GA +SKA   +   A+   VT+ LK    + L G G   + +R AR G
Sbjct: 29  MTQAQFFQAVAEGAQLSKAQVRQVFQAVEDVVTKKLKGEGKIPLGGLGAVKLVDRKARIG 88

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP TG++I I A         K LKD  N
Sbjct: 89  RNPATGEQIKIPARTAIKITPAKGLKDIFN 118


>UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 Tax=cellular
          organisms RepID=Q4ZXI2_PSEU2
          Length = 93

 Score = 86.7 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K QLI  IA   D  K  A  AL+ +   V + L++G ++ L   G   V ER ARTG
Sbjct: 3  LTKDQLIADIAEAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPARTG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG  I IAA KV  F   K L D++N
Sbjct: 63 RNPSTGAAIEIAAKKVIKFVPAKVLTDSIN 92


>UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidum RepID=DBH_TREPA
          Length = 105

 Score = 86.7 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 50/88 (56%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +S ++D +    D+S+    R +D+ ++ VT +L+ G+ V L  FG F  + R A  G+
Sbjct: 7  TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          + +TG+ ++I +  V  FR  K LK AV
Sbjct: 67 SIKTGEVVSIPSHCVVVFRPSKRLKSAV 94


>UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing
          symbionts RepID=A5CWF3_VESOH
          Length = 109

 Score = 86.7 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 46/85 (54%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           K  + + +    DI+   A          + ++L  G+ V L  FG F ++E+++R GR
Sbjct: 4  TKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRVGR 63

Query: 62 NPQTGKEITIAAAKVPSFRAGKALK 86
          NP+TG+ + I+A +V  F++G  LK
Sbjct: 64 NPKTGEMVEISARRVVVFKSGPKLK 88


>UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1
          RepID=Q0BW86_GRABC
          Length = 101

 Score = 86.7 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 60/90 (66%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN + LIDKIA   D +KA     + A I +++ +LK G++V + G G F V ERAAR G
Sbjct: 1  MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG  I IAA +   FRAGKALKDAVN
Sbjct: 61 RNPQTGATIEIAATRAARFRAGKALKDAVN 90


>UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Tax=Bacteroides
          cellulosilyticus DSM 14838 RepID=UPI0001969776
          Length = 471

 Score = 86.3 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +N   LI+ +A    + KA A   +      + ESL+    V + G GTF + +  +R  
Sbjct: 5  LNIQNLIELLAEKHGMDKADAESFVKEFFQLIEESLENDKYVKIRGLGTFKLIDVESRES 64

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           N  TG+   I      SF    ALKD +N
Sbjct: 65 VNINTGERFEIQGHTKVSFAPEPALKDLIN 94


>UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio
          RepID=B8DML6_DESVM
          Length = 95

 Score = 86.3 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 1  MNKSQLIDKIAAGA---DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAA 57
          + K++ +  +        ++K +A +A DA  + + + +  G  V L G G F+V ERAA
Sbjct: 2  LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RTGRNPQTG+ I+I A K   F A K L D +N
Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTLVDGLN 94


>UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=Mycoplasma
          synoviae 53 RepID=Q4A5S4_MYCS5
          Length = 91

 Score = 86.3 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 44/90 (48%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++ I  ++    ++     R  D  +  + E L  G+ V L   G F V  RA RT 
Sbjct: 1  MTKTEFIKAVSDKTGLTVGELNRVFDGFVYVLQEQLVAGEKVQLSNLGIFDVATRAERTI 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          +N  TGKE  +AA KV  ++  K L D VN
Sbjct: 61 KNHFTGKEQVVAAKKVVKYKPSKYLTDVVN 90


>UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas
          auensis DSM 9187 RepID=C4LBB5_TOLAT
          Length = 91

 Score = 86.3 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 56/90 (62%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++LI+ +A   + +K  A  AL A+   +   L  G+ + + G GTF++  +AAR G
Sbjct: 1  MKKAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQTG+ + IAA K   F+A KAL DAVN
Sbjct: 61 RNPQTGETVEIAAKKTVKFKAAKALADAVN 90


>UniRef50_A5CZB4 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum
          thermopropionicum SI RepID=A5CZB4_PELTS
          Length = 89

 Score = 86.3 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 45/89 (50%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +L+  +AA   +++  A   LDA+   V   ++ G  V   G GTF    R  R  
Sbjct: 1  MRKYELVRLLAAETGVTQGQAKAVLDALPDVVLSLVQAGHPVRFAGLGTFQAVTRQPRKA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RN QTG+ + + A ++ SFRA +  +  V
Sbjct: 61 RNLQTGEPVMVPARRMLSFRAERKYRKGV 89


>UniRef50_A5VG36 Histone family protein DNA-binding protein n=2
          Tax=Alphaproteobacteria RepID=A5VG36_SPHWW
          Length = 92

 Score = 86.3 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 59/90 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MN S L D +A     +KA A +A+D + A++ ++  +G++V+L GFG F VK+  AR G
Sbjct: 2  MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG+ I IAA+K  SF   KA+KD +N
Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRLN 91


>UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S3Z3_OSTLU
          Length = 115

 Score = 86.0 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 57/89 (64%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           +NK+ LID +A     +KA+ GR L+A + +++ +++ GD VAL  FGTFA K+R AR G
Sbjct: 23  LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP TG  + I AA  PSF A    KD V
Sbjct: 83  RNPLTGAALKIPAANYPSFSASSTFKDLV 111


>UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR
          Length = 101

 Score = 85.6 bits (211), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 9/99 (9%)

Query: 1  MNKSQLIDKIAAGA---------DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFA 51
          MNK++ I  +               +KA A +AL+ ++ S+  + K    V + GFG+F 
Sbjct: 1  MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60

Query: 52 VKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          ++ R +R GRNP+TG ++TI A K P F+AG  LK+A N
Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACN 99


>UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 Tax=Rhodomicrobium
           vannielii ATCC 17100 RepID=D2LFF2_RHOVA
          Length = 126

 Score = 85.6 bits (211), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 53/88 (60%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
              QL  ++A    +S+  A   L   ++S+ + LK+G  + + G GT  V++RAARTGR
Sbjct: 39  TLRQLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTGR 98

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP TG+ I I A+K  +FRA K L +++
Sbjct: 99  NPATGEAIEIKASKKVAFRAAKDLSESI 126


>UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaproteobacteria
          RepID=B9K3N0_AGRVS
          Length = 92

 Score = 85.6 bits (211), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 55/89 (61%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            +++ DKIAA  ++ KA A   ++++   +TE+   G + ++  FG F +K+   R GR
Sbjct: 3  TTNEIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGR 62

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          NP TG  I IAA+K  +F  GKA+KDA+N
Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVKDALN 91


>UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=Proteobacteria
          RepID=Q602W2_METCA
          Length = 95

 Score = 85.6 bits (211), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 1  MNKSQLIDKIAAGAD--ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAAR 58
          MN+SQLI+ I   A+  ++K    R L A+     E+L  GD+V + G     VKERAAR
Sbjct: 1  MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60

Query: 59 TGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          TGRNPQTG+ + I A +V      KALK+ V
Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERV 91


>UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptunium ATCC 15444
          RepID=Q0BZC9_HYPNA
          Length = 91

 Score = 85.2 bits (210), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 46/89 (51%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +    L  +++   ++ K  A   +   I  +   LK+G  + + G G   V++  AR G
Sbjct: 2  LTLKHLAAELSEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKG 61

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP TG+EI I A+K  +FR  K LK+ V
Sbjct: 62 RNPATGEEIKIKASKKVAFRPSKDLKERV 90


>UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Candidatus
          Liberibacter asiaticus str. psy62 RepID=C6XF17_LIBAP
          Length = 114

 Score = 85.2 bits (210), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 46/88 (52%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           +S L+  I+    +S+  + R +  +   + +S   G+ + +  F TF VK++ +R GR
Sbjct: 6  TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          N QT +E+ I   +V  F+A   LK  +
Sbjct: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93


>UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=Desulfovibrio
          RepID=C4XGD8_DESMR
          Length = 100

 Score = 85.2 bits (210), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+ ++D I    + ++A     +D ++  + +S+K  + + + GFG F   ++ AR G
Sbjct: 6  LTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKARKG 65

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNPQT   I +   KV  FR  +  +  +N
Sbjct: 66 RNPQTNASIMLPPRKVVVFRLSRKFRAELN 95


>UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis
          DSM 17393 RepID=B3C8S3_9BACE
          Length = 433

 Score = 85.2 bits (210), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 38/90 (42%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +N   LI+ +A    + K  A   +      + ESL+    V + G GTF + +  +R  
Sbjct: 5  LNIQNLIELLAEKHGMDKTDAESFVKEFFQLIEESLESDKYVKIKGLGTFKLIDVDSRES 64

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           N  TG+   I      SF     LKD +N
Sbjct: 65 VNINTGERFEIQGHTKVSFTPEPTLKDLIN 94


>UniRef50_A6L5E9 Putative integration host factor IHF alpha subunit n=6
          Tax=Bacteroides RepID=A6L5E9_BACV8
          Length = 476

 Score = 85.2 bits (210), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
              +I+ +A    ++K  A   +  +   + E+L     V + G GTF + E  +R   
Sbjct: 6  TIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVESRESV 65

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          N  TG+ I I      SF    ++KD +N
Sbjct: 66 NVNTGERIEIQGHTKISFTPDSSMKDLIN 94


>UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum
          thermopropionicum SI RepID=A5CZA3_PELTS
          Length = 92

 Score = 85.2 bits (210), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADI-SKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K   ++ + A  +  + A A RALDA+  ++T +    + V L GFG F +++R+ R 
Sbjct: 1  MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          GR+ +TG+ I+I A KV  F+ GKAL+ AV
Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAV 90


>UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Curvibacter putative
          symbiont of Hydra magnipapillata RepID=C9YFH2_9BURK
          Length = 103

 Score = 84.8 bits (209), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          MN+S LI+++A   + I K     A+  I   +  +L +G  + +  FG    + R + T
Sbjct: 1  MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           RNP+TG+++   + +   F+ GK L+  +
Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSRM 90


>UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2
          RepID=C0QI67_DESAH
          Length = 108

 Score = 84.8 bits (209), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 55/90 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K+++ ++     DIS+  +   ++  +  + E+L++G+DV + GFG F V E+ AR G
Sbjct: 3  LTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARKG 62

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP T +E+ + A +V +F+    L++ +N
Sbjct: 63 RNPATSEEMILPARRVITFKCSGKLRNLIN 92


>UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales RepID=A6L5T8_BACV8
          Length = 94

 Score = 84.8 bits (209), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 51/90 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++L  KI+A            +++++  V ESL++G++V L GFG+F VK+RA +T 
Sbjct: 1  MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN      I I A  +P+F+  K L   VN
Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKELVKLVN 90


>UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 Tax=Beijerinckiaceae
           RepID=B2ICU5_BEII9
          Length = 122

 Score = 84.8 bits (209), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 2   NKSQLIDKIAAGAD-ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
            ++ L+D I      +S+A      +  +  ++E+L  G+ V L  FG F+V+ +  R G
Sbjct: 21  TRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG 80

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           RNP+TG E+ I   +V +F+A   L  +VN
Sbjct: 81  RNPRTGVEVPIKPRRVLTFKASPVLAASVN 110


>UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria RepID=DBH_MYCS2
          Length = 208

 Score = 84.4 bits (208), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LID +       +  A  A++ ++ ++  ++ +GD V + GFG F  + RAAR  
Sbjct: 1  MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + +    VP+FR G   K  +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89


>UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter
          propionicus DSM 2379 RepID=A1AQ83_PELPD
          Length = 126

 Score = 84.4 bits (208), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/88 (54%), Positives = 60/88 (68%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++L+ KIA GA+++K  A + LD  IAS T +LK GD VA++GFG F+   R ARTG
Sbjct: 1  MNKTELVAKIAEGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKARTG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDA 88
          RNPQTGK + IA      F  GKALKD 
Sbjct: 61 RNPQTGKALQIAEKTNGKFTPGKALKDL 88


>UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID=DBH_DEIRA
          Length = 122

 Score = 84.4 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 3   KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
           K+QL++ +A    ++K  +  A+ +++  V  +L+ G  V L G GT +VKE AARTG  
Sbjct: 36  KTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGVR 95

Query: 63  PQTGKEITIAAAKVPSFRAGKALK 86
           P T ++I I A K  +F+    LK
Sbjct: 96  PGTSEKIQIPAGKKVAFKVASTLK 119


>UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium RepID=C3WGU4_9FUSO
          Length = 92

 Score = 84.4 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 1  MNKSQLIDKIAAGADIS-KAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
          M K +    +      + +  A + +D I  ++ ++L +G+D++++ +G   V ERA R 
Sbjct: 1  MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRL 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          GRNP+TG+E+ I   K   FR GKA  + +N
Sbjct: 61 GRNPKTGEEVNIGERKSVKFRPGKAFLEKLN 91


>UniRef50_B7B9I2 Putative uncharacterized protein n=3 Tax=Parabacteroides
           RepID=B7B9I2_9PORP
          Length = 136

 Score = 84.4 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 46/89 (51%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
            K  LI ++A   + +  AA + L++ I  +TE L EG+ V++  FG      +  R GR
Sbjct: 45  TKRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPGR 104

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           N +TG+E  I A     F+A + L   +N
Sbjct: 105 NLRTGEECKIRARTSVKFKASEILIQKLN 133


>UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomycetales
          RepID=DBH_MYCBO
          Length = 214

 Score = 84.4 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 51/89 (57%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LID +       +  A  A++ ++ ++  ++ +GD V + GFG F  + RAAR  
Sbjct: 1  MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + +    VP+FR G   K  V
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVV 89


>UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria RepID=DBH_SYNY3
          Length = 100

 Score = 84.4 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 1  MNKSQLIDKIAAGA------DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKE 54
          MNK +L+  +   A       I+K      + A I  + E + EG+ V LVGFG+F  +E
Sbjct: 1  MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60

Query: 55 RAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          R  R GRNP+TG ++ I A KVP+F AGK  KD V
Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 95


>UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bacteroides
          RepID=A5ZCF1_9BACE
          Length = 435

 Score = 84.4 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +    L D +AA   ++K  A   +      + ++L+    V + G GTF + +  +R  
Sbjct: 5  LTIQDLTDLLAAKHSMTKKDAEVFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRES 64

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
           N  TG+   I      SF     L+D +N
Sbjct: 65 VNVNTGERFQIKGHTKVSFSPDANLRDTIN 94


>UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae
          RepID=C6X423_FLAB3
          Length = 96

 Score = 84.0 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/90 (53%), Positives = 62/90 (68%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESL-KEGDDVALVGFGTFAVKERAART 59
          MNKS+LID +A  A I+K AA  AL++ I++VT +L ++   V+LVGFGTF+V ERAAR 
Sbjct: 1  MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          G NP T K I IAA  V  F+AG  L  +V
Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSV 90


>UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. SK209-2-6
          RepID=A4EV14_9RHOB
          Length = 94

 Score = 84.0 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          +N S LI  IA     S+ A    L A+   + ++ + G D  + G G F   ERAAR G
Sbjct: 4  LNYSGLIRAIAEETSQSQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERAARKG 63

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP TG EI IAA+   SF+  KA KD +N
Sbjct: 64 RNPSTGVEIEIAASSSLSFKPAKAAKDRLN 93


>UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergensis DSM 17361
          RepID=D1PUX5_9BACT
          Length = 94

 Score = 84.0 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGD-DVALVGFGTFAVKERAART 59
          MNK+QLI  +A+  +ISKA A   ++ ++  + ++L EGD +VA+  FG F +K+ A R 
Sbjct: 1  MNKTQLIAALASKTEISKANAATYVNTLLGIIADNLCEGDREVAIPDFGRFFIKQLAERQ 60

Query: 60 GRNPQTGKEITIAAAKVPSFRAGKAL 85
          G NP TG+ ITIAA +  +F A   L
Sbjct: 61 GVNPATGERITIAAREKVAFNASDNL 86


>UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q2LW81_SYNAS
          Length = 91

 Score = 84.0 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK  L++ +       K  A   +  ++ ++TE+LK+G+ V L+GFGTF V +R+ARTG
Sbjct: 1  MNKGDLVEAVTKVVG-KKKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSARTG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNPQTGK I I A KVP F AGK LK+AV
Sbjct: 60 RNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88


>UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus lactis
          RepID=Q02ZW9_LACLS
          Length = 120

 Score = 84.0 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 52/84 (61%)

Query: 3  KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRN 62
          K +LID +A   ++SK  A +A++A + ++T  + EG  V +  FGTF V++ AAR   +
Sbjct: 4  KQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISHD 63

Query: 63 PQTGKEITIAAAKVPSFRAGKALK 86
            + ++I +    +P FRAGKALK
Sbjct: 64 VHSREKILVGEQNIPVFRAGKALK 87


>UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococcus erythropolis
          SK121 RepID=C3JSK6_RHOER
          Length = 183

 Score = 83.6 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 50/89 (56%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++LID +       +  A  A++ ++ ++  ++  G+ V + GFG F  + RAAR  
Sbjct: 1  MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + +    VP+FR G   K  +
Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89


>UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabacteroides
          johnsonii DSM 18315 RepID=B7BF96_9PORP
          Length = 99

 Score = 83.6 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K++++ +IA      K      ++A + SV  ++ EG++V L GFG+F +K RA +  
Sbjct: 1  MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RN      I I A  +P+F+  KA  D VN
Sbjct: 61 RNISQNTTIVIPAHSIPAFKPSKAFADMVN 90


>UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus lactis
          RepID=Q02VJ4_LACLS
          Length = 103

 Score = 83.6 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 7/95 (7%)

Query: 2  NKSQLIDKIAAGAD-------ISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKE 54
          NK +L   I+  +        ++   + + +DAI AS+TE L +   + ++ FGTF  K 
Sbjct: 3  NKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKKT 62

Query: 55 RAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RA+R G NPQ G+ I I    VP+F+AGK LK+AV
Sbjct: 63 RASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97


>UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytoplasma
          RepID=Q2NIZ7_AYWBP
          Length = 106

 Score = 83.3 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDD---VALVGFGTFAVKERAA 57
          MNK + + K+A    I+K  A + L+  I  + ++ +E ++   V L GFGTF  K R A
Sbjct: 1  MNKLKFLRKLAEKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNA 60

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKALK 86
          R G+NP+TGK I I A KVP+F+  K LK
Sbjct: 61 REGKNPRTGKTIYIPAKKVPTFKFSKLLK 89


>UniRef50_C7H232 DNA binding protein HU n=3 Tax=Ruminococcaceae RepID=C7H232_9FIRM
          Length = 103

 Score = 83.3 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 44/89 (49%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M +SQ+I+ +A     ++A     +DA+   + + L+  + V + GFG F ++ R  +  
Sbjct: 1  MTRSQMIETVARKTGFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+T     + +  +P F+A    K  +
Sbjct: 61 TNPKTKVSSRLESTSIPGFKASGRFKQKL 89


>UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteria
          RepID=Q3SRD9_NITWN
          Length = 99

 Score = 83.3 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 55/88 (62%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
              L   +A   ++SK AA   L  ++  +T+ LK+GD + +VG G   V++RAAR GR
Sbjct: 12 TLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARKGR 71

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NP TG+EI I A+K  +FRA K LK+A+
Sbjct: 72 NPATGEEIQIKASKKVAFRAAKELKEAI 99


>UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=Magnetospirillum
          RepID=Q2WAF5_MAGSA
          Length = 89

 Score = 83.3 bits (205), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 54/89 (60%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M+KS +   I   A  + A A  A++A++A++ E +K     +L+GFG+F+  ER AR G
Sbjct: 1  MSKSAMSKAIRQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TGK I IAA+    F    ALK ++
Sbjct: 61 RNPRTGKTIDIAASTSIKFSTSAALKKSL 89


>UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepID=Q2SRR9_MYCCT
          Length = 90

 Score = 82.9 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 58/89 (65%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M K +LI++I    +ISK  A + ++ I  ++++ L EG +V++ GFG F + ER++R G
Sbjct: 1  MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREG 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP TG++I I A++   F+  K LK+++
Sbjct: 61 VNPSTGEKIIIPASRSARFKPAKQLKESL 89


>UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14
          Tax=Fusobacteriaceae RepID=C7N8X2_LEPBD
          Length = 93

 Score = 82.9 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 45/73 (61%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          M+K + +D  A     +K  A   ++  + +V ESL +GD V  VG+GTF VKERAARTG
Sbjct: 1  MSKKEFVDAYAKATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAARTG 60

Query: 61 RNPQTGKEITIAA 73
           NPQT +EI I  
Sbjct: 61 INPQTKEEIQIPE 73


>UniRef50_Q8UG61 Integration host factor subunit alpha n=29
          Tax=Alphaproteobacteria RepID=IHFA_AGRT5
          Length = 112

 Score = 82.9 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 49/88 (55%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           ++ L + +     +S+  +   ++ II  +  ++  G+ V L  F TF ++E+  R GR
Sbjct: 7  TRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIGR 66

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NP+TG+E+ I+  +V +F+A   LK  +
Sbjct: 67 NPKTGEEVPISPRRVMTFKASNVLKQRI 94


>UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus Pelagibacter
          RepID=Q4FLU7_PELUB
          Length = 102

 Score = 82.9 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K  LI+ I      SK  +   +D  + ++ ++LK    + L  FGTF+++ + +R G
Sbjct: 8  LTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 67

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
          RNP+T ++ TI+   V  F+A K  KD VN
Sbjct: 68 RNPKTKEQTTISNRDVVLFKASKEFKDLVN 97


>UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales
           RepID=A4X4D0_SALTO
          Length = 237

 Score = 82.9 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 2   NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
           NK++LI+ +A      +  A  ALDA++  V  ++ +G+ V++ GFG F  + R ART R
Sbjct: 19  NKAELIETLAVRLG-DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTAR 77

Query: 62  NPQTGKEITIAAAKVPSFRAGKALKDAV 89
           NP+TG+ + +    VP+FR G   K+ V
Sbjct: 78  NPRTGEAVKVKKTSVPTFRPGTGFKEMV 105


>UniRef50_Q98RC2 DNA-BINDING PROTEIN HU n=2 Tax=Mycoplasma RepID=Q98RC2_MYCPU
          Length = 126

 Score = 82.9 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%)

Query: 1   MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
           M K + + KI+  + IS+      +++++  + ESL   + V +   GTF  K +AAR G
Sbjct: 36  MTKKEFMQKISEHSFISQRDVEAIINSMVFVIKESLISEEKVTIPMLGTFETKIKAAREG 95

Query: 61  RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
               TG++I I   +V  F+  K +K+ VN
Sbjct: 96  IKFTTGEKILIPEKRVVKFKPTKYIKEVVN 125


>UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 Tax=Akkermansia
          muciniphila ATCC BAA-835 RepID=B2UMR7_AKKM8
          Length = 101

 Score = 82.5 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          + K  L++KI+A  + ++      +   +  ++ +L EGD V +  FGTF VKE   + G
Sbjct: 5  LTKRDLVNKISAETNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVKPKVG 64

Query: 61 RNPQTG-KEITIAAAKVPSFRAGKALKDAV 89
          RNP+   +++ I A  V  F+ GK LKD V
Sbjct: 65 RNPKNPDQDVPIPARSVVKFKVGKELKDQV 94


>UniRef50_A3EV93 Putative integration host factor, alpha subunit HimA like n=2
          Tax=Leptospirillum sp. Group II RepID=A3EV93_9BACT
          Length = 98

 Score = 82.5 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 1  MNKSQLIDKIAAGADISKAAAG---RALDAIIASVTESLKEGDDVALVGFGTFAVKERAA 57
          M +  ++ +I    + S+  A    +  D I+  ++ +L+ G+DV + GFGTF V++   
Sbjct: 1  MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60

Query: 58 RTGRNPQTGKEITIAAAKVPSFRAGKALKDA 88
          R GRNP+TG+ + I A     F   ++L  A
Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSLLKA 91


>UniRef50_D1XWL2 DNA-binding protein HU n=1 Tax=Prevotella bivia JCVIHMP010
          RepID=D1XWL2_9BACT
          Length = 443

 Score = 82.5 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 38/85 (44%)

Query: 6  LIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQT 65
          L   IA    +S   A + ++AI   VTE LK    V + G GTF V+    R   N  T
Sbjct: 9  LAIAIAKKYKLSNVDATKFVEAIFDIVTEELKNNGQVKIKGLGTFKVQSVKPRESVNVNT 68

Query: 66 GKEITIAAAKVPSFRAGKALKDAVN 90
          G+ + I      SF     +K+ VN
Sbjct: 69 GERVLIEGHDKISFTPDATMKELVN 93


>UniRef50_Q3BZX6 Histone-like family DNA-binding protein n=1 Tax=Xanthomonas
          campestris pv. vesicatoria str. 85-10
          RepID=Q3BZX6_XANC5
          Length = 99

 Score = 82.1 bits (202), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 40/88 (45%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNKS L   IA    +++A A   +D +   V   L E   V +  FG F ++ +  R  
Sbjct: 1  MNKSALASAIAHRHAMTQAEASSIVDTVTEVVALMLLEHGRVNINRFGRFRLQHKPPRQA 60

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDA 88
          RNP+TG+ + +       F A   LK  
Sbjct: 61 RNPKTGETVQVGERVAVQFTAADELKRR 88


>UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=DBH_STRGN
          Length = 91

 Score = 82.1 bits (202), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
          NK  LI K+AA  +++K  +  A+DA+ A+VTE L +G+ V L+GFG F V+ERAAR GR
Sbjct: 3  NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62

Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
          NPQTGKE  IAA+KVP+F+AGKALKDAV
Sbjct: 63 NPQTGKETKIAASKVPAFKAGKALKDAV 90


>UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus
          radiotolerans SRS30216 RepID=A6W7Q9_KINRD
          Length = 179

 Score = 82.1 bits (202), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 1  MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60
          MNK++++D + A     +  A  A++A++  +  ++ +GD VA+ GFGTF  + R ARTG
Sbjct: 1  MNKAEMVDALEARLG-GRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59

Query: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89
          RNP+TG+ + I    VP FR G A K+ V
Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIV 88


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.311    0.167    0.476 

Lambda     K      H
   0.267   0.0512    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 633,725,927
Number of Sequences: 3077464
Number of extensions: 25525052
Number of successful extensions: 75350
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 73559
Number of HSP's gapped (non-prelim): 1530
length of query: 90
length of database: 1,040,396,356
effective HSP length: 60
effective length of query: 30
effective length of database: 855,748,516
effective search space: 25672455480
effective search space used: 25672455480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.4 bits)
S2: 88 (38.2 bits)