19/01/2012 04:03:14 : INFO  : Run start: Thu Jan 19 04:03:11 GMT 2012
19/01/2012 04:03:25 : INFO  : Initialised job
19/01/2012 04:03:28 : INFO  : Renaming log file 'phyre2_20120119_040310.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/954c2fb326ce9783/phyre_20120119_040310.log'
19/01/2012 04:03:30 : INFO  : Initialised job:
Sequence
>batch____
MNIQALLSEKVRQAMIAAGAPADCEPQVRQSAKVQFGDYQANGMMAVAKKLGMAPRQLAE
QVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALASDRLGVATPEKQTIVVDYS
APNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQEN
AGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQ
ITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPM
GVIIQKKDGGYLYTTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYVPE
SVPLEHHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDMPADELEKL
ANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEEQ
LAAAPVIIREDREAQLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFSGFYEHCPIL
SAENEEVRNSRLKLAQLTAKTLKLGLDTLGIETVERM

19/01/2012 04:03:33 : INFO  : Checked sequence
19/01/2012 04:03:39 : INFO  : Finding homologues with PSI-BLAST
19/01/2012 04:03:42 : INFO  : PSI-BLAST 3 iterations
19/01/2012 04:06:47 : INFO  : PSI-BLAST 5 iterations
19/01/2012 04:10:14 : INFO  : Finished PSI-BLAST
19/01/2012 04:10:19 : INFO  : Running Buildali to generate a3m file
19/01/2012 04:27:40 : INFO  : Converting to HMM
19/01/2012 04:27:55 : INFO  : Calibrating HMM
19/01/2012 04:28:27 : INFO  : Searching HMM database
19/01/2012 04:40:26 : INFO  : Finished buildali
19/01/2012 04:40:29 : INFO  : Predicting secondary structure
19/01/2012 04:40:45 : INFO  : Predicted secondary structure (PSI-Pred)
19/01/2012 04:40:48 : INFO  : Predicting Disordered regions
19/01/2012 04:40:56 : INFO  : Predicted Disorder (Disopred)
19/01/2012 04:40:59 : INFO  : Running memsat_svm check
19/01/2012 04:48:46 : INFO  : Running memsat_svm full
19/01/2012 04:54:26 : INFO  : Predicted Transmembrane (memsat_svm) ID '954c2fb326ce9783'
19/01/2012 04:54:29 : INFO  : Initialising fold library search
19/01/2012 04:54:37 : INFO  : Initialised search input
19/01/2012 04:54:42 : INFO  : Building Ensemble models
19/01/2012 04:54:49 : INFO  : Building hh.c1f7uA_.model.1.pdb
19/01/2012 04:55:20 : INFO  : Building hh.c2zufA_.model.2.pdb
19/01/2012 04:55:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/954c2fb326ce9783/hh.c2zufA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/954c2fb326ce9783/c2zufA_.2.pdb
19/01/2012 04:55:54 : INFO  : Building hh.c1iq0A_.model.3.pdb
19/01/2012 04:56:19 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/954c2fb326ce9783/hh.c1iq0A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/954c2fb326ce9783/c1iq0A_.3.pdb
19/01/2012 04:56:27 : INFO  : Building c1f7uA_.1.pdb
19/01/2012 04:56:58 : INFO  : Building c2zufA_.2.pdb
19/01/2012 04:57:28 : INFO  : Building c1iq0A_.3.pdb
19/01/2012 04:57:59 : INFO  : Building c3fnrA_.4.pdb
19/01/2012 04:58:30 : INFO  : Building d1f7ua2.5.pdb
19/01/2012 04:58:58 : INFO  : Building d1iq0a2.6.pdb
19/01/2012 04:59:28 : INFO  : Building c2x1lC_.7.pdb
19/01/2012 04:59:57 : INFO  : Building c2ct8A_.8.pdb
19/01/2012 05:00:25 : INFO  : Building c1woyA_.9.pdb
19/01/2012 05:00:54 : INFO  : Building c3tqoA_.10.pdb
19/01/2012 05:01:25 : INFO  : Building c1pfuA_.11.pdb
19/01/2012 05:01:54 : INFO  : Building c3kflA_.12.pdb
19/01/2012 05:02:22 : INFO  : Building c1rqgA_.13.pdb
19/01/2012 05:02:48 : INFO  : Building c1u0bB_.14.pdb
19/01/2012 05:03:16 : INFO  : Building d1li5a2.15.pdb
19/01/2012 05:03:43 : INFO  : Building d1pfva2.16.pdb
19/01/2012 05:04:12 : INFO  : Building d2d5ba2.17.pdb
19/01/2012 05:04:37 : INFO  : Building d1ivsa4.18.pdb
19/01/2012 05:05:09 : INFO  : Building d1rqga2.19.pdb
19/01/2012 05:05:39 : INFO  : Building c3sp1B_.20.pdb
19/01/2012 05:07:37 : INFO  : Finished HH model building
19/01/2012 05:07:39 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
19/01/2012 05:08:54 : INFO  : html domain output complete ID '954c2fb326ce9783'
19/01/2012 08:57:10 : INFO  : Run end  : Thu Jan 19 08:57:08 GMT 2012
