BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (261 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P77339 Uncharacterized lipoprotein yafT n=53 Tax=Entero... 543 e-153 UniRef50_Q0F2N2 Putative aminopeptidase n=1 Tax=Mariprofundus fe... 115 1e-24 UniRef50_B9XLE7 Putative uncharacterized protein n=1 Tax=bacteri... 83 1e-14 UniRef50_B1HY59 Ferrichrome ABC transporter ferrichrome-binding ... 43 0.010 >UniRef50_P77339 Uncharacterized lipoprotein yafT n=53 Tax=Enterobacteriaceae RepID=YAFT_ECOLI Length = 261 Score = 543 bits (1399), Expect = e-153, Method: Compositional matrix adjust. Identities = 261/261 (100%), Positives = 261/261 (100%) Query: 1 MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLA 60 MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLA Sbjct: 1 MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLA 60 Query: 61 VSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKPL 120 VSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKPL Sbjct: 61 VSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKPL 120 Query: 121 TCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVWS 180 TCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVWS Sbjct: 121 TCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVWS 180 Query: 181 DYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTEQQ 240 DYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTEQQ Sbjct: 181 DYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTEQQ 240 Query: 241 IMQLKQKTYKAMVKDLVNRYQ 261 IMQLKQKTYKAMVKDLVNRYQ Sbjct: 241 IMQLKQKTYKAMVKDLVNRYQ 261 >UniRef50_Q0F2N2 Putative aminopeptidase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2N2_9PROT Length = 248 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/271 (30%), Positives = 136/271 (50%), Gaps = 42/271 (15%) Query: 3 SKKLCCICVL-FSLLAGCASES---SIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETT 58 SK + C+C+L +LAGC++ S S E++ + + N +L++ DL G + T Sbjct: 5 SKTVFCVCLLAMVILAGCSTRSISNSGYEERSIFGLKHAPDNPFYKGELSEFDLIGIDPT 64 Query: 59 LAVSEEDIQAALDGDEFRVPLNSP--------VILVQSGNRAPETIMQEEMRKYYTVSTF 110 +SE DIQ A+ V N P V+L+QSG P++ M + M +Y+TVS F Sbjct: 65 AEISESDIQQAM------VNANPPLTLKKGEAVMLIQSGAMIPDSGMVDSMNRYFTVSVF 118 Query: 111 SGIPDRQKPLTCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKY 170 SG+P R K E + ++ + LR AA+G II Y +L+T + Sbjct: 119 SGVPQR-----------KIEGKS-------SYSRLLRLAAARGGYGKIICYWGLLETAQK 160 Query: 171 DSALKSTVWSDYKNDKLTDA-ISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKN 229 D + K+ W + + D +R ++ +VDV TG W +SP ++E + +N Sbjct: 161 DLSSKTVSWVPFLGSVIPDEDQQMRIRLKVAVVDVKTGRWEMFSPKSFEGE---ERSSRN 217 Query: 230 EASTTDMTEQQIMQLKQKTYKAMVKDLVNRY 260 +D +QQ+ LK+K+Y A V+ LV+RY Sbjct: 218 SRGASD--QQQVQALKEKSYAAAVEALVSRY 246 >UniRef50_B9XLE7 Putative uncharacterized protein n=1 Tax=bacterium Ellin514 RepID=B9XLE7_9BACT Length = 247 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 120/261 (45%), Gaps = 31/261 (11%) Query: 4 KKLCCICVLFSLLAGCASESSI-DEKKKKAQVTQSNINKNTPQ--QLTDKDLFGNETTLA 60 K +C V+ +L++ C++ SI D + V N PQ +L++ D+ G E + Sbjct: 10 KWICSAAVVMALVSSCSTTRSISDTAYAPSPVNARNCFPPHPQTRELSEFDVLGIEPNQS 69 Query: 61 VSEEDI-QAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKP 119 +SEE+I +A+ + + ++LVQSG + P+ M ++ K + V F+G Sbjct: 70 ISEEEIVRASARAQRVALTRGNSILLVQSGAQYPDGPMISDLEKSFRVVPFTG------- 122 Query: 120 LTCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVW 179 VA+ ++ + LR AAK ++ Y +L++ +A K+ W Sbjct: 123 --------------VATQTGESYSKVLRLAAAKAGADHVVCYWGILESASEGAATKTISW 168 Query: 180 SDYKNDKLTDAI-SLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTE 238 N + D +R V+ +VDV TG W +SP E + P + + + Sbjct: 169 VPVVNWVIPDEKQHMRIRVKMAVVDVLTGSWTVFSPEPVESQAWSTSPRREV-----VDQ 223 Query: 239 QQIMQLKQKTYKAMVKDLVNR 259 +Q+ +LK K Y+A + L+++ Sbjct: 224 KQVEKLKAKAYEASARGLLSQ 244 >UniRef50_B1HY59 Ferrichrome ABC transporter ferrichrome-binding protein n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HY59_LYSSC Length = 330 Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 1/109 (0%) Query: 6 LCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLAVSEED 65 L + LL+ C ++SS +EKK Q NI + + LT KD GN+ TL Sbjct: 17 LATFMLAIGLLSACNAQSSSNEKKVDTQANPDNIKEQSAYPLTIKDEVGNDVTLPAKPSK 76 Query: 66 IQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIP 114 I A + D P + +G + P+ +Q++++ +S SG P Sbjct: 77 IFAPVLEDSLLALGIKPTMQWSNGVK-PQLYLQKQLQGVPEISFASGPP 124 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77339 Uncharacterized lipoprotein yafT n=53 Tax=Entero... 388 e-106 UniRef50_Q0F2N2 Putative aminopeptidase n=1 Tax=Mariprofundus fe... 305 9e-82 UniRef50_B9XLE7 Putative uncharacterized protein n=1 Tax=bacteri... 301 2e-80 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P77339 Uncharacterized lipoprotein yafT n=53 Tax=Enterobacteriaceae RepID=YAFT_ECOLI Length = 261 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 261/261 (100%), Positives = 261/261 (100%) Query: 1 MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLA 60 MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLA Sbjct: 1 MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETTLA 60 Query: 61 VSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKPL 120 VSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKPL Sbjct: 61 VSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKPL 120 Query: 121 TCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVWS 180 TCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVWS Sbjct: 121 TCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVWS 180 Query: 181 DYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTEQQ 240 DYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTEQQ Sbjct: 181 DYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTEQQ 240 Query: 241 IMQLKQKTYKAMVKDLVNRYQ 261 IMQLKQKTYKAMVKDLVNRYQ Sbjct: 241 IMQLKQKTYKAMVKDLVNRYQ 261 >UniRef50_Q0F2N2 Putative aminopeptidase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2N2_9PROT Length = 248 Score = 305 bits (781), Expect = 9e-82, Method: Composition-based stats. Identities = 82/265 (30%), Positives = 135/265 (50%), Gaps = 30/265 (11%) Query: 3 SKKLCCICVL-FSLLAGCASES---SIDEKKKKAQVTQSNINKNTPQQLTDKDLFGNETT 58 SK + C+C+L +LAGC++ S S E++ + + N +L++ DL G + T Sbjct: 5 SKTVFCVCLLAMVILAGCSTRSISNSGYEERSIFGLKHAPDNPFYKGELSEFDLIGIDPT 64 Query: 59 LAVSEEDIQAALDGDEFRVPL--NSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDR 116 +SE DIQ A+ + L V+L+QSG P++ M + M +Y+TVS FSG+P R Sbjct: 65 AEISESDIQQAMVNANPPLTLKKGEAVMLIQSGAMIPDSGMVDSMNRYFTVSVFSGVPQR 124 Query: 117 QKPLTCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKS 176 K E + ++ + LR AA+G II Y +L+T + D + K+ Sbjct: 125 -----------KIEGKS-------SYSRLLRLAAARGGYGKIICYWGLLETAQKDLSSKT 166 Query: 177 TVWSDYKNDKLTDA-ISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTD 235 W + + D +R ++ +VDV TG W +SP ++E + +N +D Sbjct: 167 VSWVPFLGSVIPDEDQQMRIRLKVAVVDVKTGRWEMFSPKSFEGE---ERSSRNSRGASD 223 Query: 236 MTEQQIMQLKQKTYKAMVKDLVNRY 260 +QQ+ LK+K+Y A V+ LV+RY Sbjct: 224 --QQQVQALKEKSYAAAVEALVSRY 246 >UniRef50_B9XLE7 Putative uncharacterized protein n=1 Tax=bacterium Ellin514 RepID=B9XLE7_9BACT Length = 247 Score = 301 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 120/261 (45%), Gaps = 31/261 (11%) Query: 4 KKLCCICVLFSLLAGCASESSI-DEKKKKAQVTQSNINKNTPQ--QLTDKDLFGNETTLA 60 K +C V+ +L++ C++ SI D + V N PQ +L++ D+ G E + Sbjct: 10 KWICSAAVVMALVSSCSTTRSISDTAYAPSPVNARNCFPPHPQTRELSEFDVLGIEPNQS 69 Query: 61 VSEEDI-QAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMRKYYTVSTFSGIPDRQKP 119 +SEE+I +A+ + + ++LVQSG + P+ M ++ K + V F+G Sbjct: 70 ISEEEIVRASARAQRVALTRGNSILLVQSGAQYPDGPMISDLEKSFRVVPFTG------- 122 Query: 120 LTCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIVYQDMLQTGKYDSALKSTVW 179 VA+ ++ + LR AAK ++ Y +L++ +A K+ W Sbjct: 123 --------------VATQTGESYSKVLRLAAAKAGADHVVCYWGILESASEGAATKTISW 168 Query: 180 SDYKNDKLTDA-ISLRYLVRFTLVDVATGEWATWSPVNYEYKVLPPLPDKNEASTTDMTE 238 N + D +R V+ +VDV TG W +SP E + P + + + Sbjct: 169 VPVVNWVIPDEKQHMRIRVKMAVVDVLTGSWTVFSPEPVESQAWSTSPRREV-----VDQ 223 Query: 239 QQIMQLKQKTYKAMVKDLVNR 259 +Q+ +LK K Y+A + L+++ Sbjct: 224 KQVEKLKAKAYEASARGLLSQ 244 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.116 0.294 Lambda K H 0.267 0.0345 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 791,045,664 Number of Sequences: 3077464 Number of extensions: 27510644 Number of successful extensions: 76466 Number of sequences better than 1.0e-01: 3 Number of HSP's better than 0.1 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 76443 Number of HSP's gapped (non-prelim): 7 length of query: 261 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 135 effective length of database: 652,635,892 effective search space: 88105845420 effective search space used: 88105845420 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 91 (39.9 bits)