Phyre 2 Results for P0AAR3

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Email | l.a.kelley@imperial.ac.uk
Description | P0AAR3
Date | Thu Jan 5 11:13:33 GMT 2012
Unique Job ID | 94ed0c89ef5a7a40

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2dxaA_
Top template information
PDB header:translation Chain: A: PDB Molecule:protein ybak; PDBTitle: crystal structure of trans editing enzyme prox from e.coli
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
158 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | T | P | A | V | K | L | L | E | K | N | K | I | S | F | Q | I | H | T | Y | E | H | D | P | A | E | T | N | F | G | D | E | V | V | K | K | L | G | L | N | P | D | Q | V | Y | K | T | L | L | V | A | V | N | G | D | M | K | H | L | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | A | V | T | P | V | A | G | Q | L | D | L | K | K | V | A | K | A | L | G | A | K | K | V | E | M | A | D | P | M | V | A | Q | R | S | T | G | Y | L | V | G | G | I | S | P | L | G | Q | K | K | R | L | P | T | I | I | D | A | P | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | .
Sequence |  | Q | E | F | A | T | I | Y | V | S | G | G | K | R | G | L | D | I | E | L | A | A | G | D | L | A | K | I | L | D | A | K | F | A | D | I | A | R | R | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2dxaA_ |

### PDB 2dxa chain A

Region: 1 - 158
Aligned: 158
Modelled: 157
Confidence: 100.0%
Identity: 97%
PDB header:translation
Chain: A: PDB Molecule:protein ybak;
PDBTitle: crystal structure of trans editing enzyme prox from e.coli

Phyre2
2 |
| d1dbxa_ |

### PDB 1dbx chain A

Region: 2 - 158
Aligned: 152
Modelled: 157
Confidence: 100.0%
Identity: 62%
Fold: YbaK/ProRS associated domain
Superfamily: YbaK/ProRS associated domain
Family: YbaK/ProRS associated domain

Phyre2
3 |
| d1vjfa_ |

### PDB 1vjf chain A

Region: 2 - 159
Aligned: 152
Modelled: 156
Confidence: 100.0%
Identity: 14%
Fold: YbaK/ProRS associated domain
Superfamily: YbaK/ProRS associated domain
Family: YbaK/ProRS associated domain

Phyre2
4 |
| d1wdva_ |

### PDB 1wdv chain A

Region: 3 - 157
Aligned: 149
Modelled: 155
Confidence: 100.0%
Identity: 21%
Fold: YbaK/ProRS associated domain
Superfamily: YbaK/ProRS associated domain
Family: YbaK/ProRS associated domain

Phyre2
5 |
| d1vkia_ |

### PDB 1vki chain A

Region: 2 - 157
Aligned: 150
Modelled: 156
Confidence: 100.0%
Identity: 21%
Fold: YbaK/ProRS associated domain
Superfamily: YbaK/ProRS associated domain
Family: YbaK/ProRS associated domain

Phyre2
6 |
| c2cx5B_ |

### PDB 2cx5 chain B

Region: 3 - 158
Aligned: 149
Modelled: 156
Confidence: 100.0%
Identity: 23%
PDB header:translation
Chain: B: PDB Molecule:a putative trans-editing enzyme;
PDBTitle: crystal structure of a putative trans-editing enzyme for2 prolyl trna synthetase

Phyre2
7 |
| c3op6B_ |

### PDB 3op6 chain B

Region: 1 - 155
Aligned: 138
Modelled: 155
Confidence: 100.0%
Identity: 18%
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an oligo-nucleotide binding protein (lpg1207)2 from legionella pneumophila subsp. pneumophila str. philadelphia 1 at3 2.00 a resolution

Phyre2
8 |
| c3memA_ |

### PDB 3mem chain A

Region: 29 - 156
Aligned: 125
Modelled: 128
Confidence: 100.0%
Identity: 18%
PDB header:signaling protein
Chain: A: PDB Molecule:putative signal transduction protein;
PDBTitle: crystal structure of a putative signal transduction protein2 (maqu_0641) from marinobacter aquaeolei vt8 at 2.25 a resolution

Phyre2
9 |
| c2j3mA_ |

### PDB 2j3m chain A

Region: 4 - 138
Aligned: 132
Modelled: 135
Confidence: 98.5%
Identity: 23%
PDB header:ligase
Chain: A: PDB Molecule:prolyl-trna synthetase;
PDBTitle: prolyl-trna synthetase from enterococcus faecalis complexed2 with atp, manganese and prolinol

Phyre2
10 |
| d1j9ba_ |

### PDB 1j9b chain A

Region: 3 - 47
Aligned: 45
Modelled: 45
Confidence: 86.2%
Identity: 9%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: ArsC-like

Phyre2
11 |
| c3gkxB_ |

### PDB 3gkx chain B

Region: 4 - 45
Aligned: 42
Modelled: 42
Confidence: 83.9%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative arsc family related protein;
PDBTitle: crystal structure of putative arsc family related protein from2 bacteroides fragilis

Phyre2
12 |
| d1z3ea1 |

### PDB 1z3e chain A domain 1

Region: 4 - 45
Aligned: 42
Modelled: 42
Confidence: 82.2%
Identity: 17%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: ArsC-like

Phyre2
13 |
| c3fz4A_ |

### PDB 3fz4 chain A

Region: 4 - 45
Aligned: 42
Modelled: 42
Confidence: 81.5%
Identity: 12%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative arsenate reductase;
PDBTitle: the crystal structure of a possible arsenate reductase from2 streptococcus mutans ua159

Phyre2
14 |
| c3l78A_ |

### PDB 3l78 chain A

Region: 4 - 45
Aligned: 42
Modelled: 42
Confidence: 81.3%
Identity: 14%
PDB header:transcription
Chain: A: PDB Molecule:regulatory protein spx;
PDBTitle: the crystal structure of smu.1142c from streptococcus mutans ua159

Phyre2
15 |
| c3rdwB_ |

### PDB 3rdw chain B

Region: 3 - 41
Aligned: 39
Modelled: 39
Confidence: 69.1%
Identity: 23%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative arsenate reductase;
PDBTitle: putative arsenate reductase from yersinia pestis

Phyre2
16 |
| c2kokA_ |

### PDB 2kok chain A

Region: 4 - 39
Aligned: 36
Modelled: 36
Confidence: 66.6%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: solution structure of an arsenate reductase (arsc) related protein2 from brucella melitensis. seattle structural genomics center for3 infectious disease target braba.00007.a.

Phyre2
17 |
| c3f0iA_ |

### PDB 3f0i chain A

Region: 4 - 41
Aligned: 38
Modelled: 38
Confidence: 64.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: arsenate reductase from vibrio cholerae.

Phyre2
18 |
| d1rw1a_ |

### PDB 1rw1 chain A

Region: 4 - 38
Aligned: 35
Modelled: 35
Confidence: 60.5%
Identity: 17%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: ArsC-like

Phyre2
19 |
| c3lgcA_ |

### PDB 3lgc chain A

Region: 4 - 37
Aligned: 34
Modelled: 34
Confidence: 46.9%
Identity: 24%
PDB header:unknown function
Chain: A: PDB Molecule:glutaredoxin 1;
PDBTitle: crystal structure of glutaredoxin 1 from francisella2 tularensis

Phyre2
20 |
| d1fova_ |

### PDB 1fov chain A

Region: 4 - 40
Aligned: 37
Modelled: 37
Confidence: 41.8%
Identity: 19%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Thioltransferase

Phyre2
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22 |
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24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
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45 |
46 |
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48 |
49 |
50 |
51 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2dxaA_ |
|  | 100.0 | 97 | PDB header:translation Chain: A: PDB Molecule:protein ybak; PDBTitle: crystal structure of trans editing enzyme prox from e.coli
2 | d1dbxa_ |
|  | 100.0 | 62 | Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain
3 | d1vjfa_ |
|  | 100.0 | 14 | Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain
4 | d1wdva_ |
|  | 100.0 | 21 | Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain
5 | d1vkia_ |
|  | 100.0 | 21 | Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain
6 | c2cx5B_ |
|  | 100.0 | 23 | PDB header:translation Chain: B: PDB Molecule:a putative trans-editing enzyme; PDBTitle: crystal structure of a putative trans-editing enzyme for2 prolyl trna synthetase
7 | c3op6B_ |
|  | 100.0 | 18 | PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an oligo-nucleotide binding protein (lpg1207)2 from legionella pneumophila subsp. pneumophila str. philadelphia 1 at3 2.00 a resolution
8 | c3memA_ |
|  | 100.0 | 18 | PDB header:signaling protein Chain: A: PDB Molecule:putative signal transduction protein; PDBTitle: crystal structure of a putative signal transduction protein2 (maqu_0641) from marinobacter aquaeolei vt8 at 2.25 a resolution
9 | c2j3mA_ |
|  | 98.5 | 23 | PDB header:ligase Chain: A: PDB Molecule:prolyl-trna synthetase; PDBTitle: prolyl-trna synthetase from enterococcus faecalis complexed2 with atp, manganese and prolinol
10 | d1j9ba_ |
|  | 86.2 | 9 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like
11 | c3gkxB_ |
|  | 83.9 | 19 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative arsc family related protein; PDBTitle: crystal structure of putative arsc family related protein from2 bacteroides fragilis
12 | d1z3ea1 |
|  | 82.2 | 17 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like
13 | c3fz4A_ |
|  | 81.5 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative arsenate reductase; PDBTitle: the crystal structure of a possible arsenate reductase from2 streptococcus mutans ua159
14 | c3l78A_ |
|  | 81.3 | 14 | PDB header:transcription Chain: A: PDB Molecule:regulatory protein spx; PDBTitle: the crystal structure of smu.1142c from streptococcus mutans ua159
15 | c3rdwB_ |
|  | 69.1 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative arsenate reductase; PDBTitle: putative arsenate reductase from yersinia pestis
16 | c2kokA_ |
|  | 66.6 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: solution structure of an arsenate reductase (arsc) related protein2 from brucella melitensis. seattle structural genomics center for3 infectious disease target braba.00007.a.
17 | c3f0iA_ |
|  | 64.0 | 26 | PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: arsenate reductase from vibrio cholerae.
18 | d1rw1a_ |
|  | 60.5 | 17 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like
19 | c3lgcA_ |
|  | 46.9 | 24 | PDB header:unknown function Chain: A: PDB Molecule:glutaredoxin 1; PDBTitle: crystal structure of glutaredoxin 1 from francisella2 tularensis
20 | d1fova_ |
|  | 41.8 | 19 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
21 | c3nznA_ |
| not modelled | 34.5 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1
22 | d1t1va_ |
| not modelled | 34.3 | 17 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:SH3BGR (SH3-binding, glutamic acid-rich protein-like)
23 | c2khpA_ |
| not modelled | 29.7 | 16 | PDB header:electron transport Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from brucella melitensis
24 | c3ic4A_ |
| not modelled | 24.8 | 10 | PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin (grx-1); PDBTitle: the crystal structure of the glutaredoxin(grx-1) from archaeoglobus2 fulgidus
25 | d1nm3a1 |
| not modelled | 23.1 | 30 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
26 | d1h75a_ |
| not modelled | 23.1 | 15 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
27 | c3h8qB_ |
| not modelled | 22.5 | 3 | PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 3; PDBTitle: crystal structure of glutaredoxin domain of human thioredoxin2 reductase 3
28 | c2ct6A_ |
| not modelled | 21.5 | 33 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like PDBTitle: solution structure of the sh3 domain-binding glutamic acid-2 rich-like protein 2
29 | c2e7pC_ |
| not modelled | 21.2 | 11 | PDB header:electron transport Chain: C: PDB Molecule:glutaredoxin; PDBTitle: crystal structure of the holo form of glutaredoxin c1 from populus2 tremula x tremuloides
30 | c1nm3B_ |
| not modelled | 20.9 | 22 | PDB header:electron transport Chain: B: PDB Molecule:protein hi0572; PDBTitle: crystal structure of heamophilus influenza hybrid-prx5
31 | c1u6tA_ |
| not modelled | 18.7 | 29 | PDB header:protein binding, signaling protein Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like PDBTitle: crystal structure of the human sh3 binding glutamic-rich2 protein like
32 | d1wika_ |
| not modelled | 16.0 | 5 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
33 | d1r7ha_ |
| not modelled | 15.8 | 15 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
34 | d1abaa_ |
| not modelled | 14.1 | 15 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
35 | c2ht9A_ |
| not modelled | 11.6 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin-2; PDBTitle: the structure of dimeric human glutaredoxin 2
36 | c1ykaA_ |
| not modelled | 11.4 | 13 | PDB header:electron transport Chain: A: PDB Molecule:monothiol glutaredoxin ydhd; PDBTitle: solution structure of grx4, a monothiol glutaredoxin from2 e. coli.
37 | d2obba1 |
| not modelled | 9.2 | 13 | Fold:HAD-like Superfamily:HAD-like Family:BT0820-like
38 | c3qmxA_ |
| not modelled | 8.9 | 29 | PDB header:electron transport Chain: A: PDB Molecule:glutaredoxin a; PDBTitle: x-ray crystal structure of synechocystis sp. pcc 6803 glutaredoxin a
39 | d1gmua2 |
| not modelled | 7.5 | 8 | Fold:Ferredoxin-like Superfamily:Urease metallochaperone UreE, C-terminal domain Family:Urease metallochaperone UreE, C-terminal domain
40 | d1jqga2 |
| not modelled | 7.0 | 5 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain
41 | c3kc2A_ |
| not modelled | 6.9 | 30 | PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae
42 | c2klxA_ |
| not modelled | 6.6 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston
43 | d2v94a1 |
| not modelled | 6.4 | 30 | Fold:Ribosomal proteins S24e, L23 and L15e Superfamily:Ribosomal proteins S24e, L23 and L15e Family:Ribosomal protein S24e
44 | d1pz4a_ |
| not modelled | 5.8 | 7 | Fold:SCP-like Superfamily:SCP-like Family:Sterol carrier protein, SCP
45 | d1ayea2 |
| not modelled | 5.5 | 22 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain
46 | d2boaa2 |
| not modelled | 5.5 | 6 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain
47 | d1pyta_ |
| not modelled | 5.4 | 22 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain
48 | d1nsaa2 |
| not modelled | 5.4 | 17 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain
49 | d1kwma2 |
| not modelled | 5.3 | 11 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain
50 | c1yj7A_ |
| not modelled | 5.3 | 21 | PDB header:protein transport Chain: A: PDB Molecule:escj; PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj
51 | d1pcaa1 |
| not modelled | 5.1 | 22 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0